Query 020636
Match_columns 323
No_of_seqs 276 out of 1873
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 03:58:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020636.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020636hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0538 Glycolate oxidase [Ene 100.0 9.1E-84 2E-88 579.3 27.9 312 4-315 1-313 (363)
2 PLN02493 probable peroxisomal 100.0 1.2E-78 2.6E-83 575.3 31.8 313 2-314 1-313 (367)
3 PLN02535 glycolate oxidase 100.0 1.6E-75 3.5E-80 554.7 31.4 312 2-316 3-314 (364)
4 PRK11197 lldD L-lactate dehydr 100.0 1.6E-75 3.5E-80 557.0 30.8 311 3-314 2-334 (381)
5 cd04736 MDH_FMN Mandelate dehy 100.0 3.9E-75 8.5E-80 550.9 30.5 304 8-314 1-323 (361)
6 TIGR02708 L_lactate_ox L-lacta 100.0 1.2E-73 2.5E-78 541.9 30.9 306 3-315 12-318 (367)
7 cd03332 LMO_FMN L-Lactate 2-mo 100.0 1.7E-73 3.8E-78 544.0 31.7 310 4-314 18-342 (383)
8 cd04737 LOX_like_FMN L-Lactate 100.0 1.2E-72 2.6E-77 534.3 30.4 307 3-315 4-311 (351)
9 PF01070 FMN_dh: FMN-dependent 100.0 3.1E-70 6.8E-75 520.9 27.8 301 14-314 1-314 (356)
10 cd02922 FCB2_FMN Flavocytochro 100.0 1.7E-69 3.6E-74 513.0 31.6 303 8-317 1-308 (344)
11 PLN02979 glycolate oxidase 100.0 1.2E-63 2.6E-68 469.3 27.5 270 45-314 43-312 (366)
12 COG1304 idi Isopentenyl diphos 100.0 3E-57 6.5E-62 429.3 19.7 303 7-314 1-307 (360)
13 cd02809 alpha_hydroxyacid_oxid 100.0 7.1E-53 1.5E-57 394.9 30.0 262 8-315 1-262 (299)
14 cd02811 IDI-2_FMN Isopentenyl- 100.0 1.6E-31 3.4E-36 253.1 19.6 233 39-315 18-290 (326)
15 PRK05437 isopentenyl pyrophosp 100.0 3.8E-31 8.3E-36 252.5 19.7 234 41-315 28-296 (352)
16 TIGR02151 IPP_isom_2 isopenten 100.0 6.2E-30 1.3E-34 242.9 19.0 229 42-314 22-288 (333)
17 TIGR01306 GMP_reduct_2 guanosi 100.0 2E-27 4.4E-32 222.1 20.3 215 42-316 3-234 (321)
18 PRK05458 guanosine 5'-monophos 99.9 3.7E-26 8.1E-31 214.4 20.9 216 42-317 6-238 (326)
19 TIGR01305 GMP_reduct_1 guanosi 99.9 4.4E-26 9.5E-31 211.6 18.8 218 42-316 9-248 (343)
20 PRK08649 inosine 5-monophospha 99.9 8.7E-23 1.9E-27 195.3 20.5 249 42-317 17-293 (368)
21 cd00381 IMPDH IMPDH: The catal 99.9 8.5E-23 1.8E-27 193.3 19.9 218 42-317 3-234 (325)
22 PRK10415 tRNA-dihydrouridine s 99.9 1.9E-22 4.2E-27 190.7 19.3 214 64-319 2-234 (321)
23 TIGR01304 IMP_DH_rel_2 IMP deh 99.9 6.6E-23 1.4E-27 195.7 15.8 252 40-317 12-292 (369)
24 TIGR00737 nifR3_yhdG putative 99.9 5.5E-22 1.2E-26 187.7 18.7 212 65-318 1-231 (319)
25 PRK06843 inosine 5-monophospha 99.9 1.7E-21 3.6E-26 187.4 21.7 219 41-316 10-292 (404)
26 PRK10550 tRNA-dihydrouridine s 99.9 1.2E-21 2.7E-26 184.2 19.4 206 72-319 1-234 (312)
27 PF00478 IMPDH: IMP dehydrogen 99.9 9.6E-22 2.1E-26 185.7 18.2 219 42-317 4-248 (352)
28 COG0042 tRNA-dihydrouridine sy 99.9 2.5E-21 5.4E-26 182.9 18.1 214 64-318 3-237 (323)
29 cd02940 DHPD_FMN Dihydropyrimi 99.9 3E-20 6.5E-25 174.3 21.1 215 60-314 1-286 (299)
30 PRK05096 guanosine 5'-monophos 99.9 1.4E-20 3E-25 175.0 18.3 217 42-317 10-250 (346)
31 TIGR00742 yjbN tRNA dihydrouri 99.9 1.2E-20 2.5E-25 178.0 17.2 204 73-318 2-232 (318)
32 TIGR01037 pyrD_sub1_fam dihydr 99.9 4.1E-20 8.9E-25 173.5 19.4 212 61-318 1-272 (300)
33 PRK07259 dihydroorotate dehydr 99.8 1.8E-19 3.8E-24 169.3 20.3 213 60-318 1-272 (301)
34 PRK11815 tRNA-dihydrouridine s 99.8 1E-19 2.2E-24 173.0 18.6 210 68-319 7-243 (333)
35 PF01207 Dus: Dihydrouridine s 99.8 2.9E-20 6.2E-25 175.1 14.3 202 75-318 1-222 (309)
36 cd02808 GltS_FMN Glutamate syn 99.8 2.1E-18 4.7E-23 167.2 23.6 230 59-315 60-320 (392)
37 cd04740 DHOD_1B_like Dihydroor 99.8 2.3E-18 5E-23 161.3 20.5 211 62-318 1-269 (296)
38 cd04739 DHOD_like Dihydroorota 99.8 4.9E-18 1.1E-22 161.0 21.9 209 60-315 1-272 (325)
39 cd02801 DUS_like_FMN Dihydrour 99.8 1.3E-18 2.9E-23 156.8 16.4 205 73-319 1-223 (231)
40 PLN02274 inosine-5'-monophosph 99.8 1.9E-18 4E-23 172.1 18.7 107 209-317 272-388 (505)
41 PRK07107 inosine 5-monophospha 99.8 2.7E-18 5.8E-23 170.7 19.0 105 212-316 269-388 (502)
42 PTZ00314 inosine-5'-monophosph 99.8 1.8E-17 3.8E-22 165.0 23.2 110 208-317 264-381 (495)
43 cd02810 DHOD_DHPD_FMN Dihydroo 99.8 1.1E-17 2.3E-22 156.1 19.8 211 63-318 1-282 (289)
44 TIGR01302 IMP_dehydrog inosine 99.8 1.6E-17 3.4E-22 164.0 21.4 108 210-317 249-364 (450)
45 cd04741 DHOD_1A_like Dihydroor 99.8 1.2E-17 2.7E-22 156.2 19.1 214 63-322 1-287 (294)
46 PRK07565 dihydroorotate dehydr 99.8 1.4E-17 3E-22 158.6 19.7 209 60-315 2-274 (334)
47 cd04738 DHOD_2_like Dihydrooro 99.8 2.2E-17 4.8E-22 156.7 20.9 244 32-322 9-324 (327)
48 PRK05286 dihydroorotate dehydr 99.8 2.7E-17 5.9E-22 157.1 19.9 241 33-322 16-333 (344)
49 cd02911 arch_FMN Archeal FMN-b 99.8 1.2E-17 2.6E-22 151.2 16.5 194 73-318 1-227 (233)
50 PRK05567 inosine 5'-monophosph 99.8 3E-17 6.5E-22 163.5 20.0 104 213-316 256-367 (486)
51 PLN02495 oxidoreductase, actin 99.8 3.6E-17 7.8E-22 157.2 19.8 220 56-315 6-305 (385)
52 PRK08318 dihydropyrimidine deh 99.8 3.7E-17 8E-22 160.3 20.0 215 59-314 2-287 (420)
53 TIGR01303 IMP_DH_rel_1 IMP deh 99.8 5.2E-17 1.1E-21 160.5 19.8 110 208-317 248-365 (475)
54 PLN02826 dihydroorotate dehydr 99.8 1.8E-16 3.8E-21 153.8 22.2 92 224-315 261-376 (409)
55 TIGR03151 enACPred_II putative 99.7 2.3E-16 4.9E-21 148.4 20.4 184 64-317 6-198 (307)
56 COG0167 PyrD Dihydroorotate de 99.7 3.5E-16 7.7E-21 145.7 20.9 113 209-321 145-284 (310)
57 PF03060 NMO: Nitronate monoox 99.7 3.5E-16 7.7E-21 148.7 19.9 203 64-317 6-227 (330)
58 KOG2335 tRNA-dihydrouridine sy 99.7 2.4E-16 5.2E-21 147.0 16.5 211 66-318 12-242 (358)
59 PRK07807 inosine 5-monophospha 99.7 1.1E-15 2.4E-20 151.2 20.4 107 211-317 253-367 (479)
60 TIGR01036 pyrD_sub2 dihydrooro 99.7 2.3E-15 4.9E-20 143.2 20.3 113 210-322 188-332 (335)
61 PRK02506 dihydroorotate dehydr 99.7 1.4E-15 3E-20 143.4 15.9 218 60-322 1-285 (310)
62 KOG2550 IMP dehydrogenase/GMP 99.7 7.9E-16 1.7E-20 144.6 11.6 112 206-317 272-391 (503)
63 PF01645 Glu_synthase: Conserv 99.6 1E-14 2.2E-19 139.0 17.5 222 68-314 62-308 (368)
64 TIGR00736 nifR3_rel_arch TIM-b 99.6 1.5E-14 3.3E-19 130.2 15.7 154 122-315 67-226 (231)
65 PF01180 DHO_dh: Dihydroorotat 99.6 5.6E-15 1.2E-19 138.4 10.9 111 212-322 149-288 (295)
66 cd04743 NPD_PKS 2-Nitropropane 99.6 3E-13 6.5E-18 126.8 19.1 184 71-318 2-211 (320)
67 COG2070 Dioxygenases related t 99.6 1E-13 2.2E-18 131.7 16.0 99 214-316 117-220 (336)
68 cd04742 NPD_FabD 2-Nitropropan 99.5 6.3E-13 1.4E-17 128.7 20.5 221 64-317 8-256 (418)
69 PRK13523 NADPH dehydrogenase N 99.5 3.3E-13 7.2E-18 128.5 16.3 232 62-319 6-315 (337)
70 cd04730 NPD_like 2-Nitropropan 99.5 2.5E-12 5.4E-17 116.3 19.7 184 71-318 2-194 (236)
71 cd02803 OYE_like_FMN_family Ol 99.5 1.1E-12 2.4E-17 124.4 16.5 109 210-320 191-322 (327)
72 TIGR02814 pfaD_fam PfaD family 99.4 9.3E-12 2E-16 121.3 20.2 221 64-317 13-261 (444)
73 cd04734 OYE_like_3_FMN Old yel 99.4 1.1E-11 2.5E-16 118.4 19.1 232 62-320 4-326 (343)
74 cd02932 OYE_YqiM_FMN Old yello 99.4 2.7E-11 5.8E-16 115.6 18.9 108 209-318 203-329 (336)
75 PRK01130 N-acetylmannosamine-6 99.4 3.1E-11 6.8E-16 108.4 17.9 177 91-318 26-211 (221)
76 cd02931 ER_like_FMN Enoate red 99.4 2.1E-11 4.7E-16 118.1 17.4 109 209-319 200-345 (382)
77 cd04722 TIM_phosphate_binding 99.4 4.3E-11 9.4E-16 103.6 17.4 185 74-310 1-200 (200)
78 KOG1436 Dihydroorotate dehydro 99.4 1.6E-11 3.4E-16 112.6 14.0 269 32-322 57-375 (398)
79 cd04729 NanE N-acetylmannosami 99.4 6.3E-11 1.4E-15 106.3 18.0 104 214-320 112-217 (219)
80 cd04747 OYE_like_5_FMN Old yel 99.3 7.6E-11 1.6E-15 113.2 18.2 108 210-319 194-338 (361)
81 cd04735 OYE_like_4_FMN Old yel 99.3 3E-11 6.5E-16 116.0 15.5 111 210-320 194-324 (353)
82 PF04131 NanE: Putative N-acet 99.3 4.9E-11 1.1E-15 103.0 14.1 93 214-312 82-176 (192)
83 COG0069 GltB Glutamate synthas 99.3 3.5E-11 7.7E-16 117.5 14.2 220 68-313 163-407 (485)
84 cd02930 DCR_FMN 2,4-dienoyl-Co 99.3 1.5E-10 3.3E-15 111.2 17.6 233 62-320 4-317 (353)
85 PRK11750 gltB glutamate syntha 99.3 1.5E-10 3.3E-15 125.0 18.3 217 72-313 859-1100(1485)
86 PRK08255 salicylyl-CoA 5-hydro 99.2 9.2E-10 2E-14 115.7 21.7 107 210-318 601-726 (765)
87 cd04733 OYE_like_2_FMN Old yel 99.2 2.4E-10 5.2E-15 109.1 13.8 110 209-320 198-333 (338)
88 cd02933 OYE_like_FMN Old yello 99.2 3.5E-10 7.6E-15 107.9 14.5 107 210-320 202-325 (338)
89 cd02929 TMADH_HD_FMN Trimethyl 99.2 1.6E-09 3.4E-14 104.7 18.4 108 209-319 199-329 (370)
90 KOG2333 Uncharacterized conser 99.1 1.6E-09 3.4E-14 104.4 15.1 210 69-318 262-494 (614)
91 PRK04180 pyridoxal biosynthesi 99.1 5.1E-10 1.1E-14 102.6 10.3 105 214-321 110-246 (293)
92 COG3010 NanE Putative N-acetyl 99.1 1.6E-08 3.5E-13 87.9 18.9 86 224-312 125-212 (229)
93 cd04727 pdxS PdxS is a subunit 99.1 6.9E-09 1.5E-13 94.9 17.4 104 214-320 101-236 (283)
94 cd00331 IGPS Indole-3-glycerol 99.1 3.4E-09 7.4E-14 94.9 15.2 84 233-319 128-211 (217)
95 COG1902 NemA NADH:flavin oxido 99.1 7.9E-09 1.7E-13 99.2 17.9 108 211-320 200-329 (363)
96 PRK00278 trpC indole-3-glycero 99.1 3.6E-09 7.7E-14 97.5 15.0 167 139-321 73-252 (260)
97 PRK10605 N-ethylmaleimide redu 99.0 5.7E-08 1.2E-12 93.6 22.3 104 211-319 210-331 (362)
98 cd04732 HisA HisA. Phosphorib 99.0 1.4E-08 3.1E-13 91.7 15.6 104 212-317 60-227 (234)
99 TIGR00007 phosphoribosylformim 99.0 1.7E-08 3.7E-13 91.1 15.0 102 213-316 60-225 (230)
100 PRK00507 deoxyribose-phosphate 98.9 2.8E-08 6.1E-13 89.2 14.9 170 130-311 16-210 (221)
101 TIGR00343 pyridoxal 5'-phospha 98.9 7.2E-09 1.6E-13 94.8 11.0 105 214-321 103-240 (287)
102 PRK14024 phosphoribosyl isomer 98.9 4.7E-08 1E-12 89.1 15.0 102 213-316 63-229 (241)
103 PRK00748 1-(5-phosphoribosyl)- 98.9 8.4E-08 1.8E-12 86.6 14.9 101 213-315 62-226 (233)
104 PF00724 Oxidored_FMN: NADH:fl 98.9 6.9E-08 1.5E-12 92.4 15.1 107 212-320 201-332 (341)
105 PRK13585 1-(5-phosphoribosyl)- 98.8 4.5E-08 9.9E-13 88.9 11.9 104 212-317 63-230 (241)
106 PRK13587 1-(5-phosphoribosyl)- 98.8 6.3E-08 1.4E-12 87.8 11.2 102 212-315 63-227 (234)
107 TIGR00262 trpA tryptophan synt 98.8 3.8E-07 8.2E-12 83.9 16.0 154 132-314 20-232 (256)
108 COG0274 DeoC Deoxyribose-phosp 98.7 9.3E-08 2E-12 84.8 10.8 171 131-311 19-214 (228)
109 cd04728 ThiG Thiazole synthase 98.7 9.3E-08 2E-12 86.0 10.2 85 232-321 130-216 (248)
110 COG0106 HisA Phosphoribosylfor 98.7 1.5E-07 3.2E-12 84.6 11.4 100 213-314 63-226 (241)
111 TIGR00735 hisF imidazoleglycer 98.7 3.4E-07 7.3E-12 84.1 13.8 100 213-314 62-234 (254)
112 PRK00208 thiG thiazole synthas 98.7 1.7E-07 3.7E-12 84.4 11.4 85 232-321 130-216 (250)
113 PRK02083 imidazole glycerol ph 98.7 3.7E-07 8E-12 83.7 13.8 101 212-314 61-232 (253)
114 cd00452 KDPG_aldolase KDPG and 98.7 1E-06 2.3E-11 77.3 15.7 163 129-313 9-175 (190)
115 PF00218 IGPS: Indole-3-glycer 98.7 3.1E-07 6.7E-12 84.0 11.9 86 232-320 164-249 (254)
116 PF00977 His_biosynth: Histidi 98.6 1.1E-07 2.4E-12 86.0 8.9 100 213-314 61-225 (229)
117 PRK13957 indole-3-glycerol-pho 98.6 1.1E-06 2.3E-11 80.0 15.2 85 232-320 157-241 (247)
118 cd04731 HisF The cyclase subun 98.6 2.3E-07 5E-12 84.5 10.9 77 235-314 151-228 (243)
119 PRK09140 2-dehydro-3-deoxy-6-p 98.6 1.6E-06 3.4E-11 77.2 15.8 165 131-315 17-185 (206)
120 TIGR00126 deoC deoxyribose-pho 98.6 2.2E-07 4.8E-12 82.8 10.1 167 131-309 13-204 (211)
121 COG0107 HisF Imidazoleglycerol 98.6 4.4E-07 9.5E-12 80.5 11.3 101 212-314 61-234 (256)
122 COG0134 TrpC Indole-3-glycerol 98.6 1.9E-06 4.2E-11 78.2 15.3 167 141-320 71-247 (254)
123 cd04723 HisA_HisF Phosphoribos 98.6 6.5E-07 1.4E-11 81.2 12.2 102 212-315 65-224 (233)
124 PRK07695 transcriptional regul 98.6 9.1E-07 2E-11 78.3 11.9 97 217-317 86-185 (201)
125 TIGR03572 WbuZ glycosyl amidat 98.6 7.9E-07 1.7E-11 80.4 11.7 75 236-313 156-231 (232)
126 TIGR01182 eda Entner-Doudoroff 98.5 5.9E-06 1.3E-10 73.3 16.5 170 126-316 10-183 (204)
127 CHL00200 trpA tryptophan synth 98.5 3.3E-06 7.2E-11 77.9 15.5 153 132-313 25-235 (263)
128 TIGR01163 rpe ribulose-phospha 98.5 5.4E-06 1.2E-10 73.4 15.9 86 235-321 115-205 (210)
129 PRK01033 imidazole glycerol ph 98.5 1.2E-06 2.6E-11 80.7 12.0 77 236-315 155-232 (258)
130 PRK14114 1-(5-phosphoribosyl)- 98.5 8.3E-07 1.8E-11 80.9 10.8 99 213-314 62-228 (241)
131 PRK13802 bifunctional indole-3 98.5 3.8E-06 8.3E-11 86.8 15.8 167 140-320 74-251 (695)
132 TIGR03128 RuMP_HxlA 3-hexulose 98.5 1.9E-05 4.2E-10 69.9 18.5 178 86-320 10-197 (206)
133 KOG1799 Dihydropyrimidine dehy 98.5 9E-08 1.9E-12 89.1 3.5 222 49-314 91-390 (471)
134 TIGR01919 hisA-trpF 1-(5-phosp 98.5 1.3E-06 2.8E-11 79.7 10.9 100 213-314 62-230 (243)
135 PRK04128 1-(5-phosphoribosyl)- 98.5 1.5E-06 3.3E-11 78.5 11.0 102 213-315 61-217 (228)
136 PLN02591 tryptophan synthase 98.4 8E-06 1.7E-10 74.7 15.5 154 132-314 12-223 (250)
137 cd04731 HisF The cyclase subun 98.4 9.8E-07 2.1E-11 80.3 9.4 80 236-318 30-109 (243)
138 TIGR00735 hisF imidazoleglycer 98.4 1.3E-06 2.7E-11 80.3 9.5 80 236-318 33-112 (254)
139 PRK07455 keto-hydroxyglutarate 98.4 1.6E-05 3.5E-10 69.7 16.0 93 212-314 93-185 (187)
140 cd04724 Tryptophan_synthase_al 98.4 1.2E-05 2.6E-10 73.4 15.8 152 133-314 11-220 (242)
141 PLN02460 indole-3-glycerol-pho 98.4 8.7E-06 1.9E-10 77.0 15.1 191 114-320 122-328 (338)
142 PRK02083 imidazole glycerol ph 98.4 1.3E-06 2.9E-11 80.0 9.3 79 236-317 33-111 (253)
143 PRK06552 keto-hydroxyglutarate 98.4 4E-05 8.7E-10 68.5 18.5 171 126-315 15-189 (213)
144 TIGR00734 hisAF_rel hisA/hisF 98.4 3E-06 6.5E-11 76.3 11.2 98 213-314 67-218 (221)
145 cd04726 KGPDC_HPS 3-Keto-L-gul 98.4 1.1E-05 2.4E-10 71.1 14.6 100 216-320 95-197 (202)
146 cd00945 Aldolase_Class_I Class 98.4 4E-05 8.7E-10 66.7 17.5 174 87-309 12-201 (201)
147 PLN02411 12-oxophytodienoate r 98.4 5E-06 1.1E-10 81.0 12.7 106 211-319 216-352 (391)
148 PRK07114 keto-hydroxyglutarate 98.4 2.4E-05 5.1E-10 70.3 16.0 171 127-316 18-195 (222)
149 PRK13125 trpA tryptophan synth 98.4 1.6E-05 3.5E-10 72.6 15.2 97 216-314 121-219 (244)
150 PRK00043 thiE thiamine-phospha 98.3 5.6E-06 1.2E-10 73.4 11.6 85 233-319 111-198 (212)
151 CHL00162 thiG thiamin biosynth 98.3 4.5E-06 9.9E-11 75.3 10.6 86 232-321 144-230 (267)
152 TIGR01304 IMP_DH_rel_2 IMP deh 98.3 3.4E-06 7.3E-11 81.2 10.3 97 209-311 117-218 (369)
153 cd00959 DeoC 2-deoxyribose-5-p 98.3 1.1E-05 2.3E-10 71.7 12.7 90 213-307 103-201 (203)
154 PRK07028 bifunctional hexulose 98.3 3.8E-05 8.1E-10 75.9 17.8 101 216-321 99-202 (430)
155 cd00564 TMP_TenI Thiamine mono 98.3 8.1E-06 1.7E-10 71.0 11.5 84 233-319 102-188 (196)
156 PRK07226 fructose-bisphosphate 98.3 1.6E-05 3.4E-10 73.6 14.0 93 217-320 131-242 (267)
157 COG0214 SNZ1 Pyridoxine biosyn 98.3 1E-05 2.2E-10 71.9 11.8 107 213-321 65-249 (296)
158 PRK13111 trpA tryptophan synth 98.3 3.1E-05 6.7E-10 71.3 15.5 46 267-315 189-234 (258)
159 KOG2334 tRNA-dihydrouridine sy 98.3 9.3E-06 2E-10 77.7 12.1 207 68-316 7-249 (477)
160 PF05690 ThiG: Thiazole biosyn 98.3 5E-06 1.1E-10 74.2 9.5 82 232-317 130-212 (247)
161 PRK05848 nicotinate-nucleotide 98.3 1.2E-05 2.6E-10 74.4 12.1 90 214-314 169-262 (273)
162 cd04732 HisA HisA. Phosphorib 98.2 5.6E-06 1.2E-10 74.7 9.5 81 235-318 31-111 (234)
163 cd00958 DhnA Class I fructose- 98.2 1.8E-05 3.9E-10 71.6 12.7 88 222-320 119-225 (235)
164 PRK04302 triosephosphate isome 98.2 5.3E-05 1.2E-09 68.2 15.4 103 217-322 107-215 (223)
165 PRK08649 inosine 5-monophospha 98.2 6.3E-06 1.4E-10 79.5 9.8 99 209-311 116-217 (368)
166 PLN02446 (5-phosphoribosyl)-5- 98.2 1.1E-05 2.4E-10 73.9 10.8 97 213-312 72-241 (262)
167 PRK13586 1-(5-phosphoribosyl)- 98.2 1.6E-05 3.4E-10 72.1 11.6 98 213-313 61-222 (232)
168 PF01081 Aldolase: KDPG and KH 98.2 2.8E-05 6.1E-10 68.5 12.5 171 131-322 15-194 (196)
169 PRK09427 bifunctional indole-3 98.2 5.2E-05 1.1E-09 75.0 15.6 185 114-319 53-248 (454)
170 PRK00748 1-(5-phosphoribosyl)- 98.2 9E-06 1.9E-10 73.4 9.1 79 236-317 33-111 (233)
171 PRK08883 ribulose-phosphate 3- 98.2 0.00013 2.9E-09 65.5 16.5 144 132-320 8-206 (220)
172 PRK14024 phosphoribosyl isomer 98.1 1.6E-05 3.5E-10 72.4 9.3 78 236-317 35-112 (241)
173 TIGR00693 thiE thiamine-phosph 98.1 5.3E-05 1.1E-09 66.5 12.2 89 228-318 98-189 (196)
174 PRK05283 deoxyribose-phosphate 98.1 3.6E-05 7.7E-10 70.4 10.8 166 130-305 20-220 (257)
175 cd00429 RPE Ribulose-5-phospha 98.0 0.00031 6.8E-09 62.0 16.3 83 236-320 118-205 (211)
176 COG0159 TrpA Tryptophan syntha 98.0 0.00022 4.8E-09 65.3 15.5 153 132-314 27-238 (265)
177 COG0107 HisF Imidazoleglycerol 98.0 2.6E-05 5.6E-10 69.4 9.0 81 235-318 32-112 (256)
178 PRK06015 keto-hydroxyglutarate 98.0 0.00055 1.2E-08 60.6 17.5 166 129-315 9-178 (201)
179 KOG1606 Stationary phase-induc 98.0 5.3E-05 1.1E-09 66.4 10.7 42 279-320 206-249 (296)
180 cd00405 PRAI Phosphoribosylant 98.0 0.00058 1.3E-08 60.4 17.5 101 214-319 85-191 (203)
181 PF01791 DeoC: DeoC/LacD famil 98.0 4.5E-05 9.8E-10 69.2 10.4 96 214-313 111-234 (236)
182 PF00290 Trp_syntA: Tryptophan 98.0 0.0001 2.3E-09 67.7 12.7 153 132-314 20-231 (259)
183 TIGR02129 hisA_euk phosphoribo 98.0 5.7E-05 1.2E-09 69.0 10.7 99 213-313 64-236 (253)
184 PRK04128 1-(5-phosphoribosyl)- 98.0 3.1E-05 6.8E-10 70.0 8.9 77 237-318 34-110 (228)
185 cd01573 modD_like ModD; Quinol 98.0 0.00072 1.6E-08 62.8 17.8 92 214-316 171-265 (272)
186 PRK02615 thiamine-phosphate py 98.0 9.4E-05 2E-09 70.8 11.8 98 218-318 231-331 (347)
187 PRK06512 thiamine-phosphate py 97.9 0.00012 2.5E-09 66.0 11.8 99 217-318 100-201 (221)
188 PRK05742 nicotinate-nucleotide 97.9 0.00011 2.4E-09 68.1 11.9 90 216-316 179-268 (277)
189 PRK13585 1-(5-phosphoribosyl)- 97.9 3.8E-05 8.3E-10 69.7 8.7 79 236-317 35-113 (241)
190 TIGR03572 WbuZ glycosyl amidat 97.9 5.4E-05 1.2E-09 68.4 9.4 79 236-317 33-111 (232)
191 PLN02617 imidazole glycerol ph 97.9 7.2E-05 1.6E-09 75.5 11.1 48 265-314 469-517 (538)
192 PRK07428 nicotinate-nucleotide 97.9 0.00014 3.1E-09 67.8 12.2 92 214-316 183-278 (288)
193 TIGR00078 nadC nicotinate-nucl 97.9 0.00014 3E-09 67.2 12.1 87 216-313 167-254 (265)
194 PRK13587 1-(5-phosphoribosyl)- 97.9 5.8E-05 1.3E-09 68.5 9.1 78 237-317 35-113 (234)
195 PRK11840 bifunctional sulfur c 97.9 9.6E-05 2.1E-09 69.4 10.5 86 231-321 203-290 (326)
196 cd01572 QPRTase Quinolinate ph 97.9 0.00019 4.2E-09 66.4 12.2 87 216-313 171-258 (268)
197 PRK05718 keto-hydroxyglutarate 97.9 0.001 2.2E-08 59.5 16.1 170 126-316 17-190 (212)
198 PRK06806 fructose-bisphosphate 97.8 0.0017 3.7E-08 60.6 18.0 78 233-314 152-235 (281)
199 PRK05581 ribulose-phosphate 3- 97.8 0.0014 3E-08 58.4 17.0 102 217-320 102-209 (220)
200 PLN02334 ribulose-phosphate 3- 97.8 0.00063 1.4E-08 61.4 14.2 83 236-320 128-213 (229)
201 PRK01033 imidazole glycerol ph 97.8 0.00011 2.3E-09 67.7 9.2 79 236-317 33-111 (258)
202 TIGR01949 AroFGH_arch predicte 97.8 0.00017 3.7E-09 66.3 10.2 93 217-320 128-238 (258)
203 TIGR00007 phosphoribosylformim 97.8 0.00013 2.8E-09 65.8 9.2 78 236-316 31-108 (230)
204 TIGR00875 fsa_talC_mipB fructo 97.8 0.0027 5.9E-08 56.7 17.5 167 89-311 8-187 (213)
205 PRK08005 epimerase; Validated 97.8 0.0023 5E-08 57.1 16.9 143 132-320 9-202 (210)
206 COG0352 ThiE Thiamine monophos 97.8 0.00031 6.8E-09 62.6 11.2 102 217-321 94-198 (211)
207 PF04481 DUF561: Protein of un 97.7 0.00058 1.2E-08 60.4 11.9 73 237-312 136-217 (242)
208 PRK08745 ribulose-phosphate 3- 97.7 0.0035 7.7E-08 56.5 17.3 144 132-320 12-210 (223)
209 PRK08072 nicotinate-nucleotide 97.7 0.00059 1.3E-08 63.4 12.4 88 215-313 176-264 (277)
210 PRK04169 geranylgeranylglycery 97.7 0.00017 3.7E-09 65.2 8.6 69 244-317 152-221 (232)
211 TIGR02129 hisA_euk phosphoribo 97.7 0.00011 2.3E-09 67.2 7.3 71 236-316 41-111 (253)
212 PTZ00170 D-ribulose-5-phosphat 97.7 0.0021 4.5E-08 58.2 15.6 143 132-320 15-212 (228)
213 cd01568 QPRTase_NadC Quinolina 97.7 0.00057 1.2E-08 63.4 12.0 90 215-315 169-261 (269)
214 COG2022 ThiG Uncharacterized e 97.7 0.00029 6.3E-09 62.8 9.4 79 233-315 138-217 (262)
215 PF00977 His_biosynth: Histidi 97.7 7.5E-05 1.6E-09 67.5 5.8 80 236-318 32-111 (229)
216 cd04723 HisA_HisF Phosphoribos 97.7 0.00024 5.3E-09 64.4 9.0 77 235-315 37-113 (233)
217 cd02812 PcrB_like PcrB_like pr 97.7 0.00023 4.9E-09 63.8 8.6 73 239-318 141-213 (219)
218 PF02581 TMP-TENI: Thiamine mo 97.6 0.00043 9.3E-09 60.2 10.0 77 232-311 101-179 (180)
219 COG0036 Rpe Pentose-5-phosphat 97.6 0.0047 1E-07 55.1 16.5 145 132-321 12-209 (220)
220 PRK13586 1-(5-phosphoribosyl)- 97.6 0.00032 6.9E-09 63.6 9.3 79 236-318 33-111 (232)
221 PRK14114 1-(5-phosphoribosyl)- 97.6 0.00032 6.9E-09 64.0 9.3 78 236-317 33-110 (241)
222 PRK08385 nicotinate-nucleotide 97.6 0.00075 1.6E-08 62.7 11.9 88 215-313 171-263 (278)
223 cd00956 Transaldolase_FSA Tran 97.6 0.004 8.6E-08 55.7 16.1 93 215-311 92-187 (211)
224 PF04131 NanE: Putative N-acet 97.6 0.00059 1.3E-08 59.3 9.8 93 213-315 20-123 (192)
225 TIGR01919 hisA-trpF 1-(5-phosp 97.5 0.00054 1.2E-08 62.6 9.2 76 239-318 37-112 (243)
226 PRK06801 hypothetical protein; 97.5 0.0064 1.4E-07 56.8 16.2 77 234-313 156-237 (286)
227 PRK13307 bifunctional formalde 97.5 0.0045 9.8E-08 60.2 15.6 191 70-320 170-369 (391)
228 TIGR01859 fruc_bis_ald_ fructo 97.5 0.015 3.2E-07 54.4 18.5 77 233-313 152-234 (282)
229 TIGR00259 thylakoid_BtpA membr 97.5 0.015 3.3E-07 53.3 18.2 77 236-319 160-237 (257)
230 TIGR01334 modD putative molybd 97.5 0.0099 2.1E-07 55.2 17.0 93 215-318 177-272 (277)
231 PRK12656 fructose-6-phosphate 97.5 0.015 3.3E-07 52.3 17.6 93 216-312 97-192 (222)
232 cd04727 pdxS PdxS is a subunit 97.5 0.0041 8.8E-08 57.4 14.1 85 212-307 52-137 (283)
233 PF03437 BtpA: BtpA family; I 97.4 0.015 3.3E-07 53.3 17.7 75 237-319 162-237 (254)
234 TIGR00343 pyridoxal 5'-phospha 97.4 0.0044 9.5E-08 57.2 14.2 85 213-308 55-140 (287)
235 PF01729 QRPTase_C: Quinolinat 97.4 0.0012 2.6E-08 56.9 9.9 91 215-316 68-162 (169)
236 PRK13397 3-deoxy-7-phosphohept 97.4 0.022 4.8E-07 52.1 18.5 204 60-312 3-222 (250)
237 PRK12595 bifunctional 3-deoxy- 97.4 0.039 8.5E-07 53.3 20.9 210 54-312 98-325 (360)
238 TIGR01768 GGGP-family geranylg 97.4 0.00081 1.8E-08 60.4 8.7 70 245-318 148-217 (223)
239 PRK01362 putative translaldola 97.4 0.019 4.1E-07 51.4 17.4 91 216-310 93-186 (214)
240 PF01884 PcrB: PcrB family; I 97.4 0.00049 1.1E-08 62.0 7.0 75 243-322 150-224 (230)
241 PRK08227 autoinducer 2 aldolas 97.4 0.0045 9.7E-08 57.1 13.4 92 217-321 132-238 (264)
242 PLN02446 (5-phosphoribosyl)-5- 97.4 0.00064 1.4E-08 62.4 7.8 73 235-315 45-117 (262)
243 TIGR01769 GGGP geranylgeranylg 97.4 0.0013 2.9E-08 58.3 9.5 66 239-309 140-205 (205)
244 PRK03512 thiamine-phosphate py 97.4 0.0032 6.9E-08 56.3 11.9 87 232-320 108-197 (211)
245 PRK07315 fructose-bisphosphate 97.3 0.013 2.9E-07 54.9 16.5 79 234-314 154-237 (293)
246 PRK06559 nicotinate-nucleotide 97.3 0.0035 7.6E-08 58.4 12.4 88 215-313 185-273 (290)
247 PRK06096 molybdenum transport 97.3 0.016 3.5E-07 54.0 16.6 89 215-314 178-269 (284)
248 PRK06106 nicotinate-nucleotide 97.3 0.0033 7.1E-08 58.5 12.0 88 215-313 182-270 (281)
249 KOG4201 Anthranilate synthase 97.3 0.0019 4.2E-08 57.0 9.6 103 213-320 174-277 (289)
250 TIGR01182 eda Entner-Doudoroff 97.3 0.0021 4.5E-08 57.1 9.8 81 213-308 46-127 (204)
251 cd04728 ThiG Thiazole synthase 97.3 0.002 4.3E-08 58.4 9.7 107 123-253 90-204 (248)
252 COG1646 Predicted phosphate-bi 97.3 0.011 2.3E-07 53.0 14.2 66 244-316 162-227 (240)
253 COG0269 SgbH 3-hexulose-6-phos 97.3 0.011 2.3E-07 52.6 14.0 95 222-319 103-202 (217)
254 PRK09016 quinolinate phosphori 97.3 0.0038 8.3E-08 58.4 11.7 90 215-316 197-287 (296)
255 COG0800 Eda 2-keto-3-deoxy-6-p 97.3 0.009 1.9E-07 53.0 13.4 162 132-314 21-186 (211)
256 PRK08999 hypothetical protein; 97.2 0.0028 6.1E-08 59.7 10.8 78 232-312 232-311 (312)
257 COG0106 HisA Phosphoribosylfor 97.2 0.002 4.4E-08 58.2 9.2 80 236-319 34-114 (241)
258 PRK06978 nicotinate-nucleotide 97.2 0.0057 1.2E-07 57.1 12.1 90 216-317 195-285 (294)
259 PRK06543 nicotinate-nucleotide 97.2 0.006 1.3E-07 56.7 12.0 91 215-316 181-272 (281)
260 COG3010 NanE Putative N-acetyl 97.2 0.02 4.3E-07 50.4 14.2 96 213-318 54-161 (229)
261 PLN02617 imidazole glycerol ph 97.1 0.0015 3.2E-08 66.2 8.3 79 236-316 270-361 (538)
262 PLN02898 HMP-P kinase/thiamin- 97.1 0.004 8.7E-08 62.7 11.4 98 218-318 381-484 (502)
263 PRK12653 fructose-6-phosphate 97.1 0.054 1.2E-06 48.7 17.4 166 89-310 8-188 (220)
264 PRK00208 thiG thiazole synthas 97.1 0.004 8.7E-08 56.4 9.8 107 123-253 90-204 (250)
265 PRK07896 nicotinate-nucleotide 97.1 0.0072 1.6E-07 56.5 11.7 88 215-314 188-279 (289)
266 PRK12655 fructose-6-phosphate 97.1 0.063 1.4E-06 48.2 17.2 91 216-310 95-188 (220)
267 PRK09722 allulose-6-phosphate 97.1 0.049 1.1E-06 49.2 16.5 107 212-319 46-209 (229)
268 KOG2335 tRNA-dihydrouridine sy 97.0 0.011 2.5E-07 56.0 12.4 90 122-253 141-233 (358)
269 PRK12290 thiE thiamine-phospha 97.0 0.0066 1.4E-07 59.5 11.2 87 233-320 307-403 (437)
270 PRK06852 aldolase; Validated 97.0 0.018 3.9E-07 54.2 13.2 93 221-318 163-274 (304)
271 PF00834 Ribul_P_3_epim: Ribul 97.0 0.011 2.4E-07 52.4 11.2 103 212-315 44-200 (201)
272 PLN02591 tryptophan synthase 96.9 0.013 2.8E-07 53.7 11.7 41 214-254 178-219 (250)
273 PRK08091 ribulose-phosphate 3- 96.9 0.033 7.1E-07 50.3 14.0 101 216-321 108-219 (228)
274 cd00452 KDPG_aldolase KDPG and 96.9 0.0092 2E-07 52.3 10.4 82 213-309 42-124 (190)
275 PRK09250 fructose-bisphosphate 96.9 0.014 3.1E-07 55.5 12.1 83 239-321 223-330 (348)
276 cd00381 IMPDH IMPDH: The catal 96.9 0.012 2.5E-07 56.1 11.4 68 236-309 96-163 (325)
277 PRK08185 hypothetical protein; 96.9 0.11 2.5E-06 48.4 17.5 77 234-312 149-231 (283)
278 PRK12376 putative translaldola 96.8 0.16 3.4E-06 46.2 17.9 170 89-310 13-200 (236)
279 PF03932 CutC: CutC family; I 96.8 0.027 5.9E-07 49.9 12.6 125 130-307 66-197 (201)
280 PRK06552 keto-hydroxyglutarate 96.8 0.0089 1.9E-07 53.5 9.7 81 213-308 51-135 (213)
281 COG1830 FbaB DhnA-type fructos 96.8 0.015 3.2E-07 53.3 10.9 93 218-321 136-249 (265)
282 PRK01130 N-acetylmannosamine-6 96.8 0.073 1.6E-06 47.6 15.3 91 214-309 45-146 (221)
283 PRK08673 3-deoxy-7-phosphohept 96.8 0.074 1.6E-06 50.8 15.8 96 214-312 190-300 (335)
284 PF09370 TIM-br_sig_trns: TIM- 96.7 0.045 9.7E-07 50.2 13.4 197 72-312 15-249 (268)
285 PRK13813 orotidine 5'-phosphat 96.7 0.0062 1.3E-07 54.3 7.8 109 212-321 42-204 (215)
286 TIGR02134 transald_staph trans 96.7 0.32 6.8E-06 44.2 18.7 170 89-310 13-200 (236)
287 cd04729 NanE N-acetylmannosami 96.7 0.095 2.1E-06 46.8 15.4 90 215-309 50-150 (219)
288 CHL00200 trpA tryptophan synth 96.7 0.033 7.2E-07 51.5 12.6 41 214-254 191-232 (263)
289 TIGR00734 hisAF_rel hisA/hisF 96.7 0.0082 1.8E-07 54.0 8.4 77 236-318 39-117 (221)
290 PRK06843 inosine 5-monophospha 96.7 0.008 1.7E-07 58.7 8.8 68 236-309 155-222 (404)
291 PF05690 ThiG: Thiazole biosyn 96.7 0.012 2.6E-07 52.9 9.0 40 213-252 163-203 (247)
292 TIGR00736 nifR3_rel_arch TIM-b 96.7 0.026 5.6E-07 51.1 11.4 42 212-253 177-220 (231)
293 PF01081 Aldolase: KDPG and KH 96.7 0.016 3.5E-07 51.1 9.8 81 213-308 46-127 (196)
294 CHL00162 thiG thiamin biosynth 96.6 0.015 3.2E-07 52.9 9.5 41 212-252 176-217 (267)
295 PLN02716 nicotinate-nucleotide 96.6 0.033 7.2E-07 52.4 12.1 94 216-313 189-294 (308)
296 PRK11572 copper homeostasis pr 96.5 0.082 1.8E-06 48.3 13.8 125 130-308 67-197 (248)
297 PRK07998 gatY putative fructos 96.5 0.12 2.5E-06 48.3 15.2 75 234-312 153-232 (283)
298 COG2876 AroA 3-deoxy-D-arabino 96.5 0.49 1.1E-05 43.4 18.5 94 213-309 141-249 (286)
299 PRK13396 3-deoxy-7-phosphohept 96.5 0.075 1.6E-06 51.0 14.1 96 214-312 198-309 (352)
300 cd00331 IGPS Indole-3-glycerol 96.5 0.0096 2.1E-07 53.1 7.6 73 236-314 34-106 (217)
301 PTZ00314 inosine-5'-monophosph 96.5 0.014 3E-07 58.8 9.3 251 42-309 19-310 (495)
302 PRK06015 keto-hydroxyglutarate 96.5 0.023 4.9E-07 50.4 9.5 81 213-308 42-123 (201)
303 PRK09140 2-dehydro-3-deoxy-6-p 96.5 0.026 5.6E-07 50.2 9.9 80 214-308 49-130 (206)
304 COG0157 NadC Nicotinate-nucleo 96.4 0.051 1.1E-06 50.2 11.9 93 213-316 173-269 (280)
305 PF01207 Dus: Dihydrouridine s 96.4 0.017 3.7E-07 54.6 9.1 92 118-253 118-213 (309)
306 cd02810 DHOD_DHPD_FMN Dihydroo 96.4 0.063 1.4E-06 50.0 12.7 155 71-253 98-272 (289)
307 COG2022 ThiG Uncharacterized e 96.4 0.049 1.1E-06 48.9 11.1 42 212-253 169-211 (262)
308 TIGR01302 IMP_dehydrog inosine 96.4 0.014 3E-07 58.1 8.7 251 42-309 3-293 (450)
309 PRK14057 epimerase; Provisiona 96.4 0.11 2.3E-06 47.7 13.5 83 234-320 143-232 (254)
310 PLN02274 inosine-5'-monophosph 96.3 0.019 4.1E-07 57.9 9.2 252 42-309 23-317 (505)
311 cd04739 DHOD_like Dihydroorota 96.3 0.13 2.8E-06 49.0 14.2 187 71-300 99-304 (325)
312 PRK11840 bifunctional sulfur c 96.2 0.018 4E-07 54.3 7.9 162 62-253 74-278 (326)
313 PRK03170 dihydrodipicolinate s 96.1 0.63 1.4E-05 43.4 17.9 190 72-320 6-216 (292)
314 TIGR00262 trpA tryptophan synt 96.1 0.093 2E-06 48.3 12.1 41 213-253 186-227 (256)
315 PF00478 IMPDH: IMP dehydrogen 96.1 0.025 5.3E-07 54.3 8.4 68 236-309 110-177 (352)
316 cd04740 DHOD_1B_like Dihydroor 96.1 0.25 5.4E-06 46.2 15.1 153 71-253 89-260 (296)
317 PRK12738 kbaY tagatose-bisphos 96.1 0.41 9E-06 44.7 16.2 76 234-312 155-235 (286)
318 PRK09195 gatY tagatose-bisphos 96.1 0.35 7.7E-06 45.2 15.8 77 234-313 155-236 (284)
319 PRK09517 multifunctional thiam 96.1 0.058 1.3E-06 57.2 11.7 87 232-319 107-204 (755)
320 COG3142 CutC Uncharacterized p 96.1 0.18 3.9E-06 45.2 12.8 123 130-304 67-195 (241)
321 cd03319 L-Ala-DL-Glu_epimerase 96.0 0.36 7.9E-06 45.5 15.9 128 126-313 127-262 (316)
322 cd00408 DHDPS-like Dihydrodipi 96.0 0.7 1.5E-05 42.7 17.6 187 73-319 3-211 (281)
323 PRK10550 tRNA-dihydrouridine s 96.0 0.11 2.4E-06 49.2 12.1 88 123-253 134-224 (312)
324 PRK07114 keto-hydroxyglutarate 96.0 0.047 1E-06 49.1 9.0 80 214-308 54-138 (222)
325 cd00947 TBP_aldolase_IIB Tagat 95.9 0.61 1.3E-05 43.4 16.5 77 234-312 148-229 (276)
326 PRK07807 inosine 5-monophospha 95.9 0.039 8.5E-07 55.3 9.1 247 42-309 14-296 (479)
327 PRK07107 inosine 5-monophospha 95.9 0.038 8.3E-07 55.7 9.0 254 41-309 10-312 (502)
328 PRK05718 keto-hydroxyglutarate 95.9 0.073 1.6E-06 47.6 9.9 81 213-308 53-134 (212)
329 COG0042 tRNA-dihydrouridine sy 95.9 0.082 1.8E-06 50.3 10.7 42 212-253 184-228 (323)
330 COG0135 TrpF Phosphoribosylant 95.9 0.75 1.6E-05 41.0 16.0 103 209-316 82-190 (208)
331 PLN02417 dihydrodipicolinate s 95.9 0.074 1.6E-06 49.5 10.2 83 239-321 28-115 (280)
332 cd02801 DUS_like_FMN Dihydrour 95.8 0.34 7.4E-06 43.2 14.1 42 212-253 170-213 (231)
333 TIGR02313 HpaI-NOT-DapA 2,4-di 95.8 1 2.2E-05 42.2 17.8 189 72-320 5-217 (294)
334 TIGR01305 GMP_reduct_1 guanosi 95.8 0.094 2E-06 49.8 10.6 68 236-309 109-178 (343)
335 COG0159 TrpA Tryptophan syntha 95.8 0.062 1.3E-06 49.5 9.0 167 66-253 50-233 (265)
336 PF00290 Trp_syntA: Tryptophan 95.7 0.077 1.7E-06 48.9 9.5 39 214-253 187-226 (259)
337 PRK07709 fructose-bisphosphate 95.7 1 2.2E-05 42.1 17.1 76 234-312 156-236 (285)
338 PRK12737 gatY tagatose-bisphos 95.7 0.68 1.5E-05 43.3 15.8 77 234-313 155-236 (284)
339 TIGR01858 tag_bisphos_ald clas 95.7 0.66 1.4E-05 43.3 15.7 76 234-312 153-233 (282)
340 PRK12457 2-dehydro-3-deoxyphos 95.7 0.44 9.6E-06 44.1 14.1 87 224-311 129-239 (281)
341 TIGR01306 GMP_reduct_2 guanosi 95.7 0.15 3.2E-06 48.4 11.4 67 237-309 97-165 (321)
342 TIGR02313 HpaI-NOT-DapA 2,4-di 95.6 0.097 2.1E-06 49.1 10.2 83 239-321 27-114 (294)
343 TIGR01303 IMP_DH_rel_1 IMP deh 95.6 0.06 1.3E-06 53.9 9.2 243 42-309 13-294 (475)
344 PRK07565 dihydroorotate dehydr 95.6 0.17 3.8E-06 48.3 12.0 96 215-312 91-200 (334)
345 PRK13957 indole-3-glycerol-pho 95.6 0.076 1.7E-06 48.5 9.0 73 236-314 64-136 (247)
346 PRK13111 trpA tryptophan synth 95.6 0.22 4.7E-06 45.9 12.1 41 213-254 188-229 (258)
347 TIGR00167 cbbA ketose-bisphosp 95.6 0.95 2.1E-05 42.4 16.4 76 234-312 158-239 (288)
348 PRK08610 fructose-bisphosphate 95.6 0.93 2E-05 42.4 16.2 76 234-312 156-236 (286)
349 PRK05096 guanosine 5'-monophos 95.6 0.12 2.7E-06 49.0 10.4 68 236-309 110-179 (346)
350 cd00951 KDGDH 5-dehydro-4-deox 95.5 0.12 2.6E-06 48.3 10.3 81 239-320 27-112 (289)
351 KOG3111 D-ribulose-5-phosphate 95.5 0.11 2.4E-06 45.3 9.2 103 215-322 103-210 (224)
352 PRK05835 fructose-bisphosphate 95.5 1.2 2.5E-05 42.1 16.8 77 234-312 155-258 (307)
353 TIGR00737 nifR3_yhdG putative 95.5 0.16 3.5E-06 48.1 11.3 42 212-253 179-222 (319)
354 PRK05458 guanosine 5'-monophos 95.5 0.073 1.6E-06 50.7 8.7 68 236-309 99-168 (326)
355 TIGR01037 pyrD_sub1_fam dihydr 95.5 0.086 1.9E-06 49.4 9.2 106 122-253 157-263 (300)
356 PRK10415 tRNA-dihydrouridine s 95.5 0.21 4.6E-06 47.4 11.9 42 212-253 181-224 (321)
357 cd01571 NAPRTase_B Nicotinate 95.5 0.15 3.2E-06 48.1 10.7 97 215-317 172-281 (302)
358 PRK03620 5-dehydro-4-deoxygluc 95.5 0.13 2.8E-06 48.5 10.3 80 239-319 34-118 (303)
359 cd02940 DHPD_FMN Dihydropyrimi 95.4 0.12 2.5E-06 48.6 9.9 111 122-253 168-281 (299)
360 PRK05567 inosine 5'-monophosph 95.4 0.079 1.7E-06 53.3 9.0 249 42-309 10-297 (486)
361 TIGR00742 yjbN tRNA dihydrouri 95.4 0.2 4.4E-06 47.6 11.3 95 122-253 123-223 (318)
362 COG0352 ThiE Thiamine monophos 95.4 0.86 1.9E-05 40.7 14.6 44 210-253 143-186 (211)
363 cd00952 CHBPH_aldolase Trans-o 95.3 0.14 3E-06 48.4 10.1 82 239-320 35-121 (309)
364 COG0329 DapA Dihydrodipicolina 95.3 0.15 3.3E-06 48.0 10.2 83 239-321 31-118 (299)
365 cd00408 DHDPS-like Dihydrodipi 95.3 0.17 3.7E-06 46.8 10.5 82 239-320 24-110 (281)
366 TIGR00674 dapA dihydrodipicoli 95.3 2 4.3E-05 39.9 17.6 190 72-320 3-213 (285)
367 PRK05286 dihydroorotate dehydr 95.3 0.061 1.3E-06 51.6 7.6 104 123-253 212-318 (344)
368 TIGR00683 nanA N-acetylneurami 95.3 0.16 3.4E-06 47.6 10.2 83 239-321 27-115 (290)
369 cd04738 DHOD_2_like Dihydrooro 95.2 0.12 2.5E-06 49.3 9.2 104 123-253 203-309 (327)
370 PRK05198 2-dehydro-3-deoxyphos 95.2 0.78 1.7E-05 42.2 14.0 90 216-310 116-230 (264)
371 TIGR01362 KDO8P_synth 3-deoxy- 95.2 0.79 1.7E-05 42.0 13.9 90 216-310 108-222 (258)
372 PF03932 CutC: CutC family; I 95.2 0.14 2.9E-06 45.5 8.8 74 233-310 7-93 (201)
373 cd00516 PRTase_typeII Phosphor 95.1 0.16 3.4E-06 47.2 9.6 96 215-315 170-273 (281)
374 cd03315 MLE_like Muconate lact 95.1 0.73 1.6E-05 42.3 13.9 87 213-309 115-210 (265)
375 cd00950 DHDPS Dihydrodipicolin 95.1 1.9 4.1E-05 40.0 16.7 187 72-318 5-213 (284)
376 PF00701 DHDPS: Dihydrodipicol 95.0 0.16 3.5E-06 47.3 9.4 83 239-321 28-115 (289)
377 PRK11572 copper homeostasis pr 95.0 0.17 3.8E-06 46.1 9.3 74 233-310 8-94 (248)
378 PRK13398 3-deoxy-7-phosphohept 95.0 0.4 8.7E-06 44.4 11.8 96 214-312 124-234 (266)
379 PRK07259 dihydroorotate dehydr 95.0 0.25 5.5E-06 46.3 10.8 154 70-253 90-263 (301)
380 TIGR01769 GGGP geranylgeranylg 95.0 0.31 6.6E-06 43.4 10.6 40 213-252 164-204 (205)
381 PRK03620 5-dehydro-4-deoxygluc 95.0 3.2 7E-05 39.0 18.2 187 72-317 12-219 (303)
382 TIGR03249 KdgD 5-dehydro-4-deo 95.0 3.2 6.9E-05 38.8 19.5 187 72-317 10-217 (296)
383 TIGR01361 DAHP_synth_Bsub phos 94.9 0.43 9.2E-06 44.0 11.9 97 213-312 121-232 (260)
384 PF13714 PEP_mutase: Phosphoen 94.9 0.31 6.8E-06 44.3 10.7 83 225-309 8-105 (238)
385 cd00429 RPE Ribulose-5-phospha 94.9 1.8 3.8E-05 37.9 15.3 129 132-314 8-139 (211)
386 PRK08318 dihydropyrimidine deh 94.9 0.19 4.1E-06 49.5 10.0 111 122-253 168-282 (420)
387 cd00954 NAL N-Acetylneuraminic 94.9 0.25 5.3E-06 46.1 10.3 82 239-320 27-114 (288)
388 PRK09427 bifunctional indole-3 94.9 0.77 1.7E-05 45.8 14.2 84 214-308 197-283 (454)
389 TIGR00674 dapA dihydrodipicoli 94.8 0.26 5.6E-06 45.9 10.3 82 239-320 25-111 (285)
390 cd03316 MR_like Mandelate race 94.8 0.55 1.2E-05 45.0 12.9 126 134-312 139-273 (357)
391 TIGR03249 KdgD 5-dehydro-4-deo 94.8 0.25 5.4E-06 46.3 10.2 81 239-320 32-117 (296)
392 PRK04147 N-acetylneuraminate l 94.8 0.24 5.3E-06 46.3 10.0 82 239-320 30-117 (293)
393 COG0800 Eda 2-keto-3-deoxy-6-p 94.8 0.15 3.2E-06 45.4 7.9 79 213-307 51-131 (211)
394 PRK11320 prpB 2-methylisocitra 94.8 0.17 3.7E-06 47.5 8.8 82 225-308 16-112 (292)
395 COG0434 SgcQ Predicted TIM-bar 94.7 0.15 3.2E-06 46.1 7.8 74 235-316 164-239 (263)
396 cd00951 KDGDH 5-dehydro-4-deox 94.7 3.7 7.9E-05 38.3 18.3 190 72-319 5-214 (289)
397 TIGR02320 PEP_mutase phosphoen 94.6 1.5 3.3E-05 41.0 14.8 151 123-313 79-244 (285)
398 PLN03033 2-dehydro-3-deoxyphos 94.5 1.6 3.5E-05 40.5 14.3 83 224-310 129-241 (290)
399 cd00950 DHDPS Dihydrodipicolin 94.5 0.31 6.7E-06 45.2 10.0 81 239-319 27-112 (284)
400 TIGR02317 prpB methylisocitrat 94.4 0.44 9.6E-06 44.5 10.7 83 225-309 12-108 (285)
401 PRK13306 ulaD 3-keto-L-gulonat 94.4 0.1 2.2E-06 46.8 6.3 86 234-320 117-202 (216)
402 cd02911 arch_FMN Archeal FMN-b 94.4 0.5 1.1E-05 42.8 10.8 40 212-253 180-220 (233)
403 TIGR03151 enACPred_II putative 94.3 1 2.2E-05 42.5 13.2 42 213-254 149-191 (307)
404 COG2070 Dioxygenases related t 94.3 0.98 2.1E-05 43.3 13.0 171 20-253 37-213 (336)
405 PRK09196 fructose-1,6-bisphosp 94.3 2.1 4.5E-05 41.1 15.0 78 234-312 173-280 (347)
406 PLN02411 12-oxophytodienoate r 94.3 1.3 2.8E-05 43.3 14.1 226 61-311 14-282 (391)
407 PRK12857 fructose-1,6-bisphosp 94.3 3.2 7E-05 38.8 16.1 76 234-312 155-235 (284)
408 TIGR01521 FruBisAldo_II_B fruc 94.3 1.8 4E-05 41.5 14.6 78 234-312 171-278 (347)
409 PRK00230 orotidine 5'-phosphat 94.2 0.14 3.1E-06 46.2 6.8 68 237-319 139-217 (230)
410 TIGR01768 GGGP-family geranylg 94.2 0.14 3.1E-06 46.1 6.6 43 212-254 165-209 (223)
411 cd06557 KPHMT-like Ketopantoat 94.1 1.6 3.5E-05 40.1 13.6 39 237-287 162-200 (254)
412 PF01116 F_bP_aldolase: Fructo 94.0 1.2 2.6E-05 41.7 12.7 169 91-312 31-238 (287)
413 PRK03170 dihydrodipicolinate s 94.0 0.48 1E-05 44.2 10.2 82 239-320 28-114 (292)
414 TIGR02319 CPEP_Pphonmut carbox 94.0 0.25 5.5E-06 46.3 8.2 83 225-309 15-112 (294)
415 cd04726 KGPDC_HPS 3-Keto-L-gul 94.0 0.98 2.1E-05 39.4 11.6 87 214-309 41-133 (202)
416 cd02809 alpha_hydroxyacid_oxid 94.0 0.6 1.3E-05 43.9 10.7 87 218-309 108-200 (299)
417 cd04741 DHOD_1A_like Dihydroor 93.9 0.52 1.1E-05 44.2 10.2 110 122-253 157-272 (294)
418 PRK11815 tRNA-dihydrouridine s 93.9 0.75 1.6E-05 43.9 11.5 43 210-253 189-233 (333)
419 PRK06512 thiamine-phosphate py 93.9 2.1 4.5E-05 38.5 13.6 43 212-254 151-193 (221)
420 PLN02979 glycolate oxidase 93.9 0.49 1.1E-05 45.7 10.0 42 266-310 211-252 (366)
421 TIGR01036 pyrD_sub2 dihydrooro 93.9 0.39 8.5E-06 45.9 9.4 104 123-253 211-317 (335)
422 PRK13399 fructose-1,6-bisphosp 93.9 3 6.6E-05 40.1 15.3 78 234-312 173-280 (347)
423 PRK13523 NADPH dehydrogenase N 93.8 0.51 1.1E-05 45.2 10.1 96 116-252 201-304 (337)
424 cd02812 PcrB_like PcrB_like pr 93.8 0.15 3.4E-06 45.7 6.1 42 213-254 162-205 (219)
425 cd06556 ICL_KPHMT Members of t 93.7 0.32 6.9E-06 44.4 8.1 83 225-308 11-108 (240)
426 COG0329 DapA Dihydrodipicolina 93.7 6.1 0.00013 37.1 18.9 190 72-319 9-219 (299)
427 COG2089 SpsE Sialic acid synth 93.7 5.6 0.00012 37.7 16.3 209 62-306 1-232 (347)
428 cd00439 Transaldolase Transald 93.7 3.9 8.4E-05 37.5 15.3 92 216-311 131-236 (252)
429 cd00377 ICL_PEPM Members of th 93.7 0.57 1.2E-05 42.7 9.8 97 215-311 59-182 (243)
430 COG4981 Enoyl reductase domain 93.6 1.9 4.2E-05 43.4 13.7 49 267-317 202-261 (717)
431 PRK00278 trpC indole-3-glycero 93.6 0.36 7.8E-06 44.5 8.3 73 236-314 73-145 (260)
432 PLN02535 glycolate oxidase 93.6 0.54 1.2E-05 45.5 9.7 91 213-309 114-251 (364)
433 PLN02334 ribulose-phosphate 3- 93.5 5.5 0.00012 35.8 15.8 95 213-314 53-151 (229)
434 COG2513 PrpB PEP phosphonomuta 93.5 0.67 1.4E-05 43.1 9.7 82 225-308 17-112 (289)
435 PRK12595 bifunctional 3-deoxy- 93.4 2.1 4.5E-05 41.4 13.5 160 77-256 159-325 (360)
436 TIGR03569 NeuB_NnaB N-acetylne 93.4 2.8 6E-05 40.1 14.1 143 132-304 12-161 (329)
437 PF00701 DHDPS: Dihydrodipicol 93.2 7 0.00015 36.3 17.4 190 72-320 6-216 (289)
438 cd04722 TIM_phosphate_binding 93.2 2.9 6.2E-05 35.3 13.0 96 215-314 47-148 (200)
439 PLN02493 probable peroxisomal 93.2 0.71 1.5E-05 44.7 9.9 42 266-310 212-253 (367)
440 TIGR02321 Pphn_pyruv_hyd phosp 93.1 0.86 1.9E-05 42.7 10.2 83 225-309 14-110 (290)
441 PF04309 G3P_antiterm: Glycero 93.1 0.053 1.1E-06 47.0 1.9 141 125-311 22-171 (175)
442 PRK07084 fructose-bisphosphate 93.1 3.2 7E-05 39.4 14.0 78 234-312 164-271 (321)
443 PRK00043 thiE thiamine-phospha 93.1 4.9 0.00011 35.1 14.6 42 212-253 146-188 (212)
444 PRK04169 geranylgeranylglycery 93.0 0.25 5.4E-06 44.8 6.1 43 212-254 170-214 (232)
445 PRK07709 fructose-bisphosphate 93.0 0.79 1.7E-05 42.9 9.6 45 209-253 187-233 (285)
446 PRK08883 ribulose-phosphate 3- 93.0 2.9 6.4E-05 37.5 13.0 41 213-253 150-195 (220)
447 cd06556 ICL_KPHMT Members of t 92.9 4.9 0.00011 36.6 14.5 40 236-287 159-198 (240)
448 TIGR01858 tag_bisphos_ald clas 92.9 0.71 1.5E-05 43.1 9.2 45 209-253 184-230 (282)
449 PRK00311 panB 3-methyl-2-oxobu 92.8 1.7 3.7E-05 40.2 11.5 93 213-308 3-113 (264)
450 cd04734 OYE_like_3_FMN Old yel 92.8 1.7 3.8E-05 41.6 12.0 41 212-252 272-314 (343)
451 PRK12858 tagatose 1,6-diphosph 92.8 0.61 1.3E-05 44.7 8.8 74 239-315 190-282 (340)
452 PRK05581 ribulose-phosphate 3- 92.8 6.5 0.00014 34.6 15.4 129 132-313 12-142 (220)
453 PRK07455 keto-hydroxyglutarate 92.8 1 2.2E-05 39.3 9.5 117 126-308 14-131 (187)
454 PRK12737 gatY tagatose-bisphos 92.8 0.85 1.8E-05 42.6 9.5 45 209-253 186-232 (284)
455 COG0167 PyrD Dihydroorotate de 92.7 1.2 2.6E-05 42.2 10.4 173 88-296 109-304 (310)
456 PRK00311 panB 3-methyl-2-oxobu 92.7 3.3 7.2E-05 38.3 13.2 40 236-287 164-203 (264)
457 cd02933 OYE_like_FMN Old yello 92.6 2 4.4E-05 41.1 12.2 41 212-252 272-313 (338)
458 cd06557 KPHMT-like Ketopantoat 92.6 0.56 1.2E-05 43.1 8.0 82 225-308 11-110 (254)
459 PRK13397 3-deoxy-7-phosphohept 92.6 5 0.00011 36.8 14.0 157 77-256 56-222 (250)
460 KOG4175 Tryptophan synthase al 92.6 2.9 6.2E-05 37.0 11.8 42 269-312 197-238 (268)
461 PRK12738 kbaY tagatose-bisphos 92.5 0.91 2E-05 42.5 9.4 45 209-253 186-232 (286)
462 cd00564 TMP_TenI Thiamine mono 92.5 5.1 0.00011 34.2 13.7 42 212-253 137-178 (196)
463 PRK12857 fructose-1,6-bisphosp 92.3 1 2.2E-05 42.1 9.4 45 209-253 186-232 (284)
464 COG2185 Sbm Methylmalonyl-CoA 92.3 2.6 5.6E-05 35.2 10.8 87 214-308 29-121 (143)
465 TIGR03569 NeuB_NnaB N-acetylne 92.3 10 0.00022 36.2 16.3 195 73-312 1-224 (329)
466 cd00959 DeoC 2-deoxyribose-5-p 92.2 5 0.00011 35.4 13.4 76 237-313 73-155 (203)
467 cd02803 OYE_like_FMN_family Ol 92.2 2.6 5.6E-05 39.8 12.4 41 212-252 268-310 (327)
468 KOG0399 Glutamate synthase [Am 92.2 0.24 5.2E-06 53.7 5.5 101 212-312 1080-1201(2142)
469 cd02811 IDI-2_FMN Isopentenyl- 92.2 2.5 5.4E-05 40.3 12.1 96 213-310 99-210 (326)
470 COG1954 GlpP Glycerol-3-phosph 92.1 0.63 1.4E-05 40.0 7.0 64 235-309 109-173 (181)
471 PRK06801 hypothetical protein; 92.1 1.2 2.6E-05 41.7 9.5 44 210-253 188-233 (286)
472 PRK00507 deoxyribose-phosphate 92.1 0.86 1.9E-05 41.0 8.3 43 212-254 164-209 (221)
473 cd04733 OYE_like_2_FMN Old yel 92.1 2.9 6.2E-05 39.9 12.5 40 213-252 280-321 (338)
474 TIGR01361 DAHP_synth_Bsub phos 92.0 8.8 0.00019 35.4 15.1 149 89-256 77-232 (260)
475 PLN02826 dihydroorotate dehydr 91.9 1.4 3.1E-05 43.3 10.4 41 213-253 327-370 (409)
476 PRK09195 gatY tagatose-bisphos 91.9 1.1 2.4E-05 41.9 9.1 45 209-253 186-232 (284)
477 COG1954 GlpP Glycerol-3-phosph 91.9 3.6 7.7E-05 35.4 11.3 42 213-254 132-174 (181)
478 cd00377 ICL_PEPM Members of th 91.9 0.71 1.5E-05 42.1 7.7 82 225-308 8-103 (243)
479 PRK06806 fructose-bisphosphate 91.9 1.3 2.9E-05 41.3 9.7 150 92-253 65-230 (281)
480 PTZ00411 transaldolase-like pr 91.9 6.4 0.00014 37.7 14.3 95 213-311 146-257 (333)
481 PRK08610 fructose-bisphosphate 91.8 1.2 2.7E-05 41.6 9.3 45 209-253 187-233 (286)
482 cd08205 RuBisCO_IV_RLP Ribulos 91.7 13 0.00029 36.0 18.7 192 73-317 131-355 (367)
483 COG0826 Collagenase and relate 91.7 5.5 0.00012 38.3 13.9 65 216-289 103-172 (347)
484 TIGR03128 RuMP_HxlA 3-hexulose 91.7 3.3 7.1E-05 36.3 11.6 91 213-312 39-136 (206)
485 KOG3111 D-ribulose-5-phosphate 91.6 4.6 0.0001 35.5 11.8 59 214-276 157-216 (224)
486 PRK12309 transaldolase/EF-hand 91.3 13 0.00028 36.5 16.1 93 213-310 140-250 (391)
487 cd02922 FCB2_FMN Flavocytochro 91.3 1.3 2.7E-05 42.7 9.1 43 265-310 200-242 (344)
488 PF01884 PcrB: PcrB family; I 91.2 0.32 6.9E-06 44.0 4.6 39 216-254 173-212 (230)
489 cd07937 DRE_TIM_PC_TC_5S Pyruv 91.2 11 0.00023 35.0 14.9 47 210-256 177-227 (275)
490 PRK07998 gatY putative fructos 91.2 1.3 2.8E-05 41.4 8.7 44 210-253 184-229 (283)
491 TIGR00693 thiE thiamine-phosph 91.1 1.6 3.5E-05 37.9 9.0 80 216-313 48-127 (196)
492 PF00218 IGPS: Indole-3-glycer 91.1 1.3 2.8E-05 40.7 8.5 76 236-317 71-146 (254)
493 TIGR03586 PseI pseudaminic aci 90.9 6.5 0.00014 37.5 13.4 86 212-308 74-166 (327)
494 TIGR00640 acid_CoA_mut_C methy 90.9 3.4 7.4E-05 34.0 10.2 84 216-307 21-110 (132)
495 PRK05437 isopentenyl pyrophosp 90.8 3 6.4E-05 40.2 11.1 96 213-310 107-218 (352)
496 cd00954 NAL N-Acetylneuraminic 90.7 14 0.0003 34.3 17.9 187 72-317 5-214 (288)
497 PF04898 Glu_syn_central: Glut 90.7 1.2 2.6E-05 41.6 8.1 71 237-307 146-222 (287)
498 PLN02495 oxidoreductase, actin 90.7 13 0.00027 36.4 15.4 158 71-254 113-300 (385)
499 TIGR01859 fruc_bis_ald_ fructo 90.7 1.9 4.2E-05 40.2 9.5 155 92-254 64-231 (282)
500 COG1411 Uncharacterized protei 90.6 0.43 9.3E-06 42.0 4.7 49 264-314 167-215 (229)
No 1
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=100.00 E-value=9.1e-84 Score=579.27 Aligned_cols=312 Identities=75% Similarity=1.123 Sum_probs=298.2
Q ss_pred CCChHHHHHHHHHhCChhhhhhhcCCccchHHHHHhHHhhcccccccccccCCCCCccceeecCcccccceEECcccccc
Q 020636 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK 83 (323)
Q Consensus 4 ~~~~~d~~~~A~~~l~~~~~~y~~~g~~~e~t~~~N~~~~~~i~l~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~ 83 (323)
+.|++|||+.|+++||+.+||||.|||+|+.|+++|+++|.||.|+||+|+|++.+|+||+++|++++.||++||++++.
T Consensus 1 lv~~~dfe~~A~~~L~K~a~dyy~sgA~d~~Tl~~N~~AF~ri~~rPr~L~dVs~iD~sTtvlG~~i~~Pi~iapTa~qk 80 (363)
T KOG0538|consen 1 LVNVDDFEALAKQQLPKMAYDYYESGAEDQETLDENINAFRRILFRPRILRDVSKIDTSTTVLGQKISAPIMIAPTAMQK 80 (363)
T ss_pred CccHHHHHHHHHHhhhHHHHHHHhcCCcchhhHHHHHHHHHhhhccchhheecccccccceeccccccceeEEcchHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCC-CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 020636 84 MAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (323)
Q Consensus 84 l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~-~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~ 162 (323)
|+||+||.+.|++|.++|++|++|+++++|+|||.+++| +.+|||||+++|++.+.++++|+|++||++|++|||+|+.
T Consensus 81 ma~pdGE~~taraa~~~~~~~i~Ss~at~S~EdI~~aap~~~rwfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~l 160 (363)
T KOG0538|consen 81 MAHPDGELATARAAQAAGTIMILSSWATCSVEDIASAAPPGIRWFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRL 160 (363)
T ss_pred ccCCcccHHHHHHHHhcCCcEEEechhcCCHHHHHhhCCCCcEEEEEEecCchHHHHHHHHHHHHcCceEEEEEeccccc
Confidence 999999999999999999999999999999999999885 8899999999999999999999999999999999999999
Q ss_pred CchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHH
Q 020636 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242 (323)
Q Consensus 163 g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~ 242 (323)
|+|+.|++|+|.+|+.+++.++.+...........+++..+++.+.||+++|++|+|+++.+++||++||+++.|||+.|
T Consensus 161 G~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~id~Sl~W~Di~wLr~~T~LPIvvKGilt~eDA~~A 240 (363)
T KOG0538|consen 161 GRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQIDPSLSWKDIKWLRSITKLPIVVKGVLTGEDARKA 240 (363)
T ss_pred cCchhhhhhcccCCcccccccccccccccCCcccchhhhhhhhcCCCCCCChhhhHHHHhcCcCCeEEEeecccHHHHHH
Confidence 99999999999999999888876654444444466788889999999999999999999999999999999999999999
Q ss_pred HHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 243 ~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.++|+++|+||||||||+|..+.+++.|+++.+++.+++||+.|||||+|.|++|||+|||.+|.+||+++.-
T Consensus 241 ve~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v~g 313 (363)
T KOG0538|consen 241 VEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIVWG 313 (363)
T ss_pred HHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcCceEEEEecCcccchHHHHHHhcccceEEecCchhee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998653
No 2
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=100.00 E-value=1.2e-78 Score=575.31 Aligned_cols=313 Identities=91% Similarity=1.317 Sum_probs=287.8
Q ss_pred CCCCChHHHHHHHHHhCChhhhhhhcCCccchHHHHHhHHhhcccccccccccCCCCCccceeecCcccccceEECcccc
Q 020636 2 GEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM 81 (323)
Q Consensus 2 ~~~~~~~d~~~~A~~~l~~~~~~y~~~g~~~e~t~~~N~~~~~~i~l~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~ 81 (323)
++++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|++||+++++||++||+|+
T Consensus 1 ~~~~~i~D~e~~Ar~~lp~~~~~y~~gga~de~t~~~N~~af~r~~l~PRvLrdv~~~d~~t~~lG~~~~~Pi~iAP~g~ 80 (367)
T PLN02493 1 MEITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAM 80 (367)
T ss_pred CccCCHHHHHHHHHHhCCHHHHHHHccCcchhHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCC
Q 020636 82 QKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (323)
Q Consensus 82 ~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~ 161 (323)
++|+||++|+++|++|+++|++|++|+++++++|||++..+++.|||||+.+|++.++++++||+++||++|++|||+|+
T Consensus 81 ~~l~hp~gE~a~AraA~~~gi~~~lSt~ss~slEeva~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~ 160 (367)
T PLN02493 81 QKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPR 160 (367)
T ss_pred HhhcCCchHHHHHHHHHHcCCCeeecCcccCCHHHHHhcCCCCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCC
Confidence 99999999999999999999999999999999999998766789999999999999999999999999999999999999
Q ss_pred CCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHH
Q 020636 162 LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARI 241 (323)
Q Consensus 162 ~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~ 241 (323)
.|+|++|+|++|.+|+++.++++.+...++.....+.+...+...+.++.++|++|+|+|+.|++||++|++.+.++|+.
T Consensus 161 ~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~~~~PiivKgV~~~~dA~~ 240 (367)
T PLN02493 161 LGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARI 240 (367)
T ss_pred CCcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHH
Confidence 99999999999999977766554322111111112233444555677899999999999999999999999999999999
Q ss_pred HHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 242 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 242 ~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
+.++|+|+|+||||||+++|+.++++++|+++.+.+.+++|||+|||||+|.|++|||++||++|+|||+++.
T Consensus 241 a~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~ 313 (367)
T PLN02493 241 AIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVF 313 (367)
T ss_pred HHHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence 9999999999999999999999999999999999887789999999999999999999999999999999974
No 3
>PLN02535 glycolate oxidase
Probab=100.00 E-value=1.6e-75 Score=554.66 Aligned_cols=312 Identities=64% Similarity=0.971 Sum_probs=284.0
Q ss_pred CCCCChHHHHHHHHHhCChhhhhhhcCCccchHHHHHhHHhhcccccccccccCCCCCccceeecCcccccceEECcccc
Q 020636 2 GEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM 81 (323)
Q Consensus 2 ~~~~~~~d~~~~A~~~l~~~~~~y~~~g~~~e~t~~~N~~~~~~i~l~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~ 81 (323)
++++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|++||+++++||++||+|+
T Consensus 3 ~~~~~i~d~~~~A~~~lp~~~~~Y~~gga~~e~t~~~N~~af~~~~l~Pr~L~dv~~~d~~t~~lG~~~~~P~~iaP~g~ 82 (364)
T PLN02535 3 DEIVNVNEFQELAKQALPKMYYDFYAGGAEDQHTLKENVQAFRRITFRPRVLVDVSKIDMSTTILGYTISAPIMIAPTAM 82 (364)
T ss_pred cccCCHHHHHHHHHHhCCHHHHHHHhcCCcccHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCC
Q 020636 82 QKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (323)
Q Consensus 82 ~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~ 161 (323)
++++||++|+++|++|+++|+++++|+++++++|||++..+++.|||||+++|++.++++++||+++||++|++|||+|+
T Consensus 83 ~~l~hp~gE~a~AraA~~~g~~~~lSt~s~~slEeva~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~ 162 (364)
T PLN02535 83 HKLAHPEGEIATARAAAACNTIMVLSFMASCTVEEVASSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPR 162 (364)
T ss_pred hcccCcchHHHHHHHHHHcCCCeEecCcccCCHHHHHhcCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCC
Confidence 99999999999999999999999999999999999998767789999999999999999999999999999999999999
Q ss_pred CCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHH
Q 020636 162 LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARI 241 (323)
Q Consensus 162 ~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~ 241 (323)
.|+|++|+|++|.+|. .+++.+....+.....+.+...+.....++.++|++|+|+++.+++||++|++.++++|+.
T Consensus 163 ~g~R~~d~r~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~PvivKgV~~~~dA~~ 239 (364)
T PLN02535 163 LGRREADIKNKMISPQ---LKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIEWLRSITNLPILIKGVLTREDAIK 239 (364)
T ss_pred CCCchhhhhcCCCCcc---hhhHhhhhccCCCccccccHHHHHHhccCCCCCHHHHHHHHhccCCCEEEecCCCHHHHHH
Confidence 9999999999998873 2222211000111112233444555667899999999999999999999999999999999
Q ss_pred HHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 242 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 242 ~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
+.++|+|+|+|+||||+++|.++++++.|+++.+.+..++|||++|||+++.|++|+|++||++|++||+|+...
T Consensus 240 a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~~l 314 (364)
T PLN02535 240 AVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIYGL 314 (364)
T ss_pred HHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHhhh
Confidence 999999999999999999999999999999999887667999999999999999999999999999999998753
No 4
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-75 Score=557.04 Aligned_cols=311 Identities=36% Similarity=0.600 Sum_probs=281.4
Q ss_pred CCCChHHHHHHHHHhCChhhhhhhcCCccchHHHHHhHHhhcccccccccccCCCCCccceeecCcccccceEECccccc
Q 020636 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (323)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~g~~~e~t~~~N~~~~~~i~l~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~ 82 (323)
.++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|++||+++++||++||+|++
T Consensus 2 ~~~~i~D~~~~Ar~~Lp~~~~~Y~~gga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pi~iAP~g~~ 81 (381)
T PRK11197 2 IISAASDYRAAAQRRLPPFLFHYIDGGAYAEYTLRRNVEDLADIALRQRVLKDMSDLSLETTLFGEKLSMPVALAPVGLT 81 (381)
T ss_pred ccCCHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcceecccccCCCCCCCceEECCcccccchhhChHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 020636 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (323)
Q Consensus 83 ~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~ 162 (323)
+++||++|+++|++|+++|++|++|+++++++|||+++.+++.|||||+++|++.++++++||+++||++|++|||+|+.
T Consensus 82 ~l~hp~gE~~~AraA~~~g~~~~lSt~ss~slEeia~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTVD~pv~ 161 (381)
T PRK11197 82 GMYARRGEVQAARAADAKGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVP 161 (381)
T ss_pred hccCCchHHHHHHHHHHcCCCEEeeCCCcCCHHHHHhccCCCeEEEEEecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence 99999999999999999999999999999999999988777899999999999999999999999999999999999999
Q ss_pred CchHHHHhhccCCCCccccccccccc-----------------cCCCc----cc-cchhhHHHHhhccCCccCHHHHHHH
Q 020636 163 GRREADIKNRFTLPPFLTLKNFQGLD-----------------LGKMD----EA-NDSGLAAYVAGQIDRSLSWKDVKWL 220 (323)
Q Consensus 163 g~r~~d~~~~~~~~~~~~~~~~~~~~-----------------~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~i~~i 220 (323)
|+|++|+|++|.+|+. +++++.+.. .++.. .. .......+...+.+|.++|++|+||
T Consensus 162 G~Rerd~rn~~~~p~~-~~~~~~~~~~~p~w~~~~~~~~~~~~~~n~~~~~~~~~g~~~~~~~~~~~~~~~ltW~di~~l 240 (381)
T PRK11197 162 GARYRDAHSGMSGPNA-AMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWI 240 (381)
T ss_pred CCChhhhhcCCCCCCc-hhhhHHhhhcCchhhhhhccccCCCcccccccccccccchhHHHHHHHhccCCCCCHHHHHHH
Confidence 9999999999988842 333322110 00000 00 0112223455567899999999999
Q ss_pred HHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHH
Q 020636 221 QTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300 (323)
Q Consensus 221 ~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~ 300 (323)
++.|++|+++|++.+.++|+.+.++|+|+|+||||||+++++.+++++.|+++.+.+..++|||++|||+++.|++|+|+
T Consensus 241 r~~~~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALa 320 (381)
T PRK11197 241 RDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIA 320 (381)
T ss_pred HHhCCCCEEEEecCCHHHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988766899999999999999999999
Q ss_pred cCCCEEEEcccccc
Q 020636 301 LGASGIFVSIMPCQ 314 (323)
Q Consensus 301 lGAd~V~iG~~~~~ 314 (323)
+||++|++||+|+.
T Consensus 321 LGA~~V~iGr~~l~ 334 (381)
T PRK11197 321 LGADTVLLGRAFVY 334 (381)
T ss_pred cCcCceeEhHHHHH
Confidence 99999999999975
No 5
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=3.9e-75 Score=550.88 Aligned_cols=304 Identities=43% Similarity=0.670 Sum_probs=278.1
Q ss_pred HHHHHHHHHhCChhhhhhhcCCccchHHHHHhHHhhcccccccccccCCCCCccceeecCcccccceEECcccccccCCc
Q 020636 8 MEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87 (323)
Q Consensus 8 ~d~~~~A~~~l~~~~~~y~~~g~~~e~t~~~N~~~~~~i~l~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~ 87 (323)
+|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|++++++||+|++||+++++||++||+|+++|+||
T Consensus 1 ~D~~~~Ar~~lp~~~~~Y~~~ga~de~t~~~N~~af~~~~l~PRvLr~v~~~d~~ttllG~~~~~P~~iaP~g~~~l~hp 80 (361)
T cd04736 1 EDYRSLAKKRLPRMVFDYLEGGAEDEKGLRHNRDAFDRWRFIPRRLVDVSKRDISASLFGKVWSAPLVIAPTGLNGAFWP 80 (361)
T ss_pred ChHHHHHHHhCCHHHHHHHccCcchHHHHHHHHHHHHHcCccccccCCCCCCCCceeECCccccccccccHHHHHhccCC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHH
Q 020636 88 EGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA 167 (323)
Q Consensus 88 ~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~ 167 (323)
+||+++|++|+++|++|++|+++++|+|||+++.+++.|||||+. +++.++++++||+++||++|+||||+|+.|+|++
T Consensus 81 ~gE~a~AraA~~~g~~~~lSt~ss~siEeva~a~~~~~wfQLY~~-~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~ 159 (361)
T cd04736 81 NGDLALARAAAKAGIPFVLSTASNMSIEDVARQADGDLWFQLYVV-HRELAELLVKRALAAGYTTLVLTTDVAVNGYRER 159 (361)
T ss_pred cHHHHHHHHHHHcCCcEEeeCCCCCCHHHHHhhcCCCeEEEEEec-CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCchh
Confidence 999999999999999999999999999999988777899999995 6999999999999999999999999999999999
Q ss_pred HHhhccCCCCccccccccccccCC----------------Ccc--c-cchhhHHHHhhccCCccCHHHHHHHHHhcCCCE
Q 020636 168 DIKNRFTLPPFLTLKNFQGLDLGK----------------MDE--A-NDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPI 228 (323)
Q Consensus 168 d~~~~~~~~~~~~~~~~~~~~~~~----------------~~~--~-~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv 228 (323)
|+|++|.+|+++..+++.+....| ... . ...+...++..+.|+.++|++|+||++.++.|+
T Consensus 160 d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pv 239 (361)
T cd04736 160 DLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKL 239 (361)
T ss_pred hhhcCCCCCcccchhhhhhhccCchhhhhhcccccccccccccccccchhhHHHHHHhccCCcCCHHHHHHHHHhCCCCE
Confidence 999999999877766644321111 000 0 111233355556789999999999999999999
Q ss_pred EEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEE
Q 020636 229 LVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFV 308 (323)
Q Consensus 229 ~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~i 308 (323)
++|++.+.++|+.+.++|+|+|+||||||+|+++.+++++.|+++.+.+ ++|||++|||+++.|++|||++||++|++
T Consensus 240 iiKgV~~~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~--~~~vi~dGGIr~g~Dv~KALaLGA~aV~i 317 (361)
T cd04736 240 LVKGIVTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAAT--YKPVLIDSGIRRGSDIVKALALGANAVLL 317 (361)
T ss_pred EEecCCCHHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHHh--CCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 9999999999999999999999999999999999999999999999887 69999999999999999999999999999
Q ss_pred cccccc
Q 020636 309 SIMPCQ 314 (323)
Q Consensus 309 G~~~~~ 314 (323)
||+++.
T Consensus 318 Gr~~l~ 323 (361)
T cd04736 318 GRATLY 323 (361)
T ss_pred CHHHHH
Confidence 999874
No 6
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=100.00 E-value=1.2e-73 Score=541.86 Aligned_cols=306 Identities=38% Similarity=0.550 Sum_probs=276.4
Q ss_pred CCCChHHHHHHHHHhCChhhhhhhcCCccchHHHHHhHHhhcccccccccccCCCCCccceeecCcccccceEECccccc
Q 020636 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (323)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~g~~~e~t~~~N~~~~~~i~l~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~ 82 (323)
+++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|++++++||+|++||+++++||++||+|++
T Consensus 12 ~~~~i~D~~~~A~~~lp~~~~~y~~~ga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pv~iaP~g~~ 91 (367)
T TIGR02708 12 DFINTYDLEEMAQQVIPKGAFGYIASGAGDTFTLRENIRAFNHKLIVPHLLQDVENPSTEIEFLGHKLKSPFIMAPVAAH 91 (367)
T ss_pred CCCCHHHHHHHHHHhCCHHHHHHHhcCCchHHHHHHHHHHHHhcCeecccccCCCCCCCceeeCCcccccccccCcHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcC-CCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCC
Q 020636 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG-PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (323)
Q Consensus 83 ~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~-~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~ 161 (323)
++.||++|+++|++|+++|++|++|+++++++|||+++. +++.|||||+.+|++.+.++++||+++||++|++|||+|+
T Consensus 92 ~l~~p~gE~~~ArAA~~~g~~~~lSt~ss~slEev~~~~~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p~ 171 (367)
T TIGR02708 92 KLANEQGEVATARGVSEFGSIYTTSSYSTADLPEISEALNGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATV 171 (367)
T ss_pred hccCCcHHHHHHHHHHHcCCCeeecccccCCHHHHHhhcCCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 999999999999999999999999999999999999874 5789999999999999999999999999999999999999
Q ss_pred CCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHH
Q 020636 162 LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARI 241 (323)
Q Consensus 162 ~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~ 241 (323)
.|+|++|+|++|.+|......+ .....+ .+... ..+....++.++|++|+|+++.+++||++|++.+.++|+.
T Consensus 172 ~g~R~~d~r~~~~~p~~~~~~~--~~~~~~----~~~~~-~~~~~~~~~~~~w~~i~~l~~~~~~PvivKGv~~~eda~~ 244 (367)
T TIGR02708 172 GGNREVDVRNGFVFPVGMPIVQ--EYLPTG----AGKSM-DNVYKSAKQKLSPRDIEEIAGYSGLPVYVKGPQCPEDADR 244 (367)
T ss_pred CCcchhhhhcCCCCCCccchhh--hhcccC----Cccch-hhhccccCCCCCHHHHHHHHHhcCCCEEEeCCCCHHHHHH
Confidence 9999999999998875332111 000000 00000 0111234678999999999999999999999999999999
Q ss_pred HHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 242 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 242 ~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
+.++|+|+|+||||||||+++.+++++.|+++++++++++|||+||||+++.|++|+|++||++|+|||+++..
T Consensus 245 a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~~ 318 (367)
T TIGR02708 245 ALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALGRPVIYG 318 (367)
T ss_pred HHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHHH
Confidence 99999999999999999999999999999999998866899999999999999999999999999999998653
No 7
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=100.00 E-value=1.7e-73 Score=544.01 Aligned_cols=310 Identities=39% Similarity=0.614 Sum_probs=277.0
Q ss_pred CCChHHHHHHHHHhCChhhhhhhcCCccchHHHHHhHHhhcccccccccccCCCCCccceeecCcccccceEECcccccc
Q 020636 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK 83 (323)
Q Consensus 4 ~~~~~d~~~~A~~~l~~~~~~y~~~g~~~e~t~~~N~~~~~~i~l~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~ 83 (323)
+.|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|+|||+++++||++||+|+++
T Consensus 18 ~~~i~D~~~~Ar~~lp~~~~~y~~gGa~de~t~~~N~~af~~~~l~PRvL~dv~~~dt~t~llG~~~~~P~~iAP~g~~~ 97 (383)
T cd03332 18 PVDPERLEALAREALSPGAFAYVAGGAGSESTARANRDAFSRWRIVPRMLRGVTERDLSVELFGRTLAAPLLLAPIGVQE 97 (383)
T ss_pred cCCHHHHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhcCccccccccCCCCCCceeeCCccccccceechHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcC-CCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 020636 84 MAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG-PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (323)
Q Consensus 84 l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~-~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~ 162 (323)
++||++|+++|++|+++|+++++|+++++++|||++.. +++.|||||+.+|++.+.++++||+++||++|++|||+|+.
T Consensus 98 l~~p~gE~a~ArAA~~~gi~~~lSt~ss~slEeIa~~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~ 177 (383)
T cd03332 98 LFHPDAELATARAAAELGVPYILSTASSSSIEDVAAAAGDAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSL 177 (383)
T ss_pred hcCCcHHHHHHHHHHHcCCCeeecCCCCCCHHHHHhhcCCCCcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 99999999999999999999999999999999999874 37899999999999999999999999999999999999999
Q ss_pred CchHHHHhhccCCCCc--cccccccccc-------cCCCcc-c----cchhhHHHHhhccCCccCHHHHHHHHHhcCCCE
Q 020636 163 GRREADIKNRFTLPPF--LTLKNFQGLD-------LGKMDE-A----NDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPI 228 (323)
Q Consensus 163 g~r~~d~~~~~~~~~~--~~~~~~~~~~-------~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv 228 (323)
|+|++|+|++| .|.. ..+.++...+ ...... . ...+...+.....++.++|++|+|+++.|++||
T Consensus 178 g~Rerd~r~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~pv 256 (383)
T cd03332 178 GWRPRDLDLGY-LPFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLPI 256 (383)
T ss_pred CCchhhhhcCC-CCCccccchhhhhccchhhhccccCCCCCcccccccchhHHHHHHhcCCCCCCHHHHHHHHHhcCCCE
Confidence 99999999999 3431 2221111000 000000 0 111223333444689999999999999999999
Q ss_pred EEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEE
Q 020636 229 LVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFV 308 (323)
Q Consensus 229 ~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~i 308 (323)
++|++.+.+||+.+.++|+|+|+|||||||++|++++++++|+++++++.+++|||++|||+++.|++|||++||++|++
T Consensus 257 ivKgV~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~i 336 (383)
T cd03332 257 VLKGILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLI 336 (383)
T ss_pred EEecCCCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999999999999999999887689999999999999999999999999999
Q ss_pred cccccc
Q 020636 309 SIMPCQ 314 (323)
Q Consensus 309 G~~~~~ 314 (323)
||+|+.
T Consensus 337 Gr~~l~ 342 (383)
T cd03332 337 GRPYAY 342 (383)
T ss_pred cHHHHH
Confidence 999983
No 8
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=1.2e-72 Score=534.35 Aligned_cols=307 Identities=42% Similarity=0.652 Sum_probs=278.5
Q ss_pred CCCChHHHHHHHHHhCChhhhhhhcCCccchHHHHHhHHhhcccccccccccCCCCCccceeecCcccccceEECccccc
Q 020636 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (323)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~g~~~e~t~~~N~~~~~~i~l~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~ 82 (323)
+++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|++||+++++||++||||++
T Consensus 4 ~~~~i~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~a~~~~~l~prvL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~ 83 (351)
T cd04737 4 DIINLYDLEAEAKKVIPKGAFGYIAGGSEDEWTLRENTRAFNHKQIVPRVLQGVESPDTSTELLGIKLKTPIIMAPIAAH 83 (351)
T ss_pred ccCcHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcCeechhccCCCCCCCceEeCCccccchhhhHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcC-CCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCC
Q 020636 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG-PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (323)
Q Consensus 83 ~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~-~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~ 161 (323)
++.||++|+++|++|+++|+++++|+.+++++|||.++. +++.|||||+++|++.+.++++|++++||++|++|+|+|+
T Consensus 84 ~l~~p~ge~a~AraA~~~gi~~~lSt~s~~s~Eei~~~~~~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~ 163 (351)
T cd04737 84 GLAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAKASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATV 163 (351)
T ss_pred HhcCCchHHHHHHHHHHcCCCEEecCCCCCCHHHHHHhcCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 999999999999999999999999999999999999886 5789999999999999999999999999999999999999
Q ss_pred CCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHH
Q 020636 162 LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARI 241 (323)
Q Consensus 162 ~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~ 241 (323)
.|+|++|+|++|.+|.++.......... + .+.+.. ......++.++|++++|+++.+++||++|++.++++|+.
T Consensus 164 ~g~R~~d~r~~~~~p~~~~~~~~~~~~~-~----~~~~~~-~~~~~~~~~~~~~~l~~lr~~~~~PvivKgv~~~~dA~~ 237 (351)
T cd04737 164 GGNREADIRNKFQFPFGMPNLNHFSEGT-G----KGKGIS-EIYAAAKQKLSPADIEFIAKISGLPVIVKGIQSPEDADV 237 (351)
T ss_pred CCcchHHHHhcCCCCcccchhhhhcccc-c----cCcchh-hhhhhccCCCCHHHHHHHHHHhCCcEEEecCCCHHHHHH
Confidence 9999999999998886544332211100 0 000000 112234678899999999999999999999999999999
Q ss_pred HHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 242 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 242 ~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
+.++|+|+|+||||||+++|+++++++.|+++++++.+++|||++|||+++.|++|+|++||++|+|||+++..
T Consensus 238 a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~ 311 (351)
T cd04737 238 AINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYG 311 (351)
T ss_pred HHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHH
Confidence 99999999999999999999999999999999998866899999999999999999999999999999998764
No 9
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=100.00 E-value=3.1e-70 Score=520.89 Aligned_cols=301 Identities=49% Similarity=0.738 Sum_probs=267.7
Q ss_pred HHHhCChhhhhhhcCCccchHHHHHhHHhhcccccccccccCCCCCccceeecCcccccceEECcccccccCCcHHHHHH
Q 020636 14 AKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYAT 93 (323)
Q Consensus 14 A~~~l~~~~~~y~~~g~~~e~t~~~N~~~~~~i~l~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~ 93 (323)
||++||+..|+|++||+++|.|+++|+++|++|+|+||+|++++++||+|+|||+++++||++|||+++++.||++|.++
T Consensus 1 Ar~~lp~~~~~yi~gga~~e~t~~~N~~af~~i~l~prvL~dv~~~D~st~~lG~~~s~P~~iaP~~~~~l~~~~ge~~l 80 (356)
T PF01070_consen 1 ARRRLPPRVFDYIDGGAGDEVTFRRNREAFDRIRLRPRVLRDVSDPDTSTTFLGQKLSMPFFIAPMGGGGLAHPDGERAL 80 (356)
T ss_dssp HHHHS-HHHHHHHHHHSTTTHHHHHHHHGGGGEEE---SSSBGSS-BSSEEETTEEESSSEEEEEESTGGGTSTTHHHHH
T ss_pred CccccCHHHHHHHHHcCCCcHHHHHHHHHHHHhcccccccCCcccCCCCeeeCCccCCCCeEEcchhhhhhhccchHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhcc
Q 020636 94 ARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF 173 (323)
Q Consensus 94 a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~ 173 (323)
|++|+++|+++++|++++.++|++.+..+++.|||||.+.|++.+.++++|++++||++++||||+|+.++|++|+|++|
T Consensus 81 AraA~~~Gi~~~lss~s~~~~e~ia~~~~~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~ 160 (356)
T PF01070_consen 81 ARAAAKAGIPMMLSSQSSASLEEIAAASGGPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGF 160 (356)
T ss_dssp HHHHHHHTSEEEEETTCSSCHHHHHHHCTSEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTC
T ss_pred HHHHhccCcceeccCCccCCHHHHHhhccCCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCccccccccc
Confidence 99999999999999999999999999877889999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccccccCCCc-------------cccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHH
Q 020636 174 TLPPFLTLKNFQGLDLGKMD-------------EANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 240 (323)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~ 240 (323)
.+|.+++.+++.+....|.. ........++...+.++.++|+.|+|+++.|++||++|++++.+||+
T Consensus 161 ~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv~~~~da~ 240 (356)
T PF01070_consen 161 SVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPGDNGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGVLSPEDAK 240 (356)
T ss_dssp CCSTTHCTTCGTTTTTTT-TTTGG-----CSSSSTSTCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE-SHHHHH
T ss_pred CCCcccccccccccccCcccccccccccccccCCCcchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEecccHHHHH
Confidence 99998887777654332210 11223344466667789999999999999999999999999999999
Q ss_pred HHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 241 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 241 ~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
.+.++|+|+|+|||||||++|+++++++.|+++++++++++|||+|||||+|.|++|+|+|||++|++||+|+.
T Consensus 241 ~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~ 314 (356)
T PF01070_consen 241 RAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGIGRPFLY 314 (356)
T ss_dssp HHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHHH
T ss_pred HHHhcCCCEEEecCCCcccCccccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHH
Confidence 99999999999999999999999999999999999987789999999999999999999999999999999875
No 10
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=100.00 E-value=1.7e-69 Score=512.96 Aligned_cols=303 Identities=47% Similarity=0.707 Sum_probs=275.0
Q ss_pred HHHHHHHHHhCChhhhhhhcCCccchHHHHHhHHhhcccccccccccCCCCCccceeecCcccccceEECcccccccCCc
Q 020636 8 MEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87 (323)
Q Consensus 8 ~d~~~~A~~~l~~~~~~y~~~g~~~e~t~~~N~~~~~~i~l~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~ 87 (323)
+|||++||++||+.+|+|++||++||.|+++|+++|++|+|+||+|++++++||+|++||+++++||++|||++++++||
T Consensus 1 ~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~af~~~~l~pr~L~dv~~~d~~~~~lG~~~~~Pi~iaP~~~~~~~~~ 80 (344)
T cd02922 1 HDFEAAAKKYLSKKAWAYYSSGADDEITLRENLEAFQRIRFRPRVLRDVEKVDTSTTILGHKVSLPFFISPAALAKLAHP 80 (344)
T ss_pred ChHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhCceeccccCCCCCCCCceEECCcccCCceeeChHHHhhhCCc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCceeecCCCCCCHHHHHhc-CC-CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCch
Q 020636 88 EGEYATARAASAAGTIMTLSSWSTSSVEEVAST-GP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRR 165 (323)
Q Consensus 88 ~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~-~~-~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r 165 (323)
++|.++|++|+++|++|++|++++.++|||.+. .| .+.|||||.++|++.++++++|++++||++|++|+|+|+.|+|
T Consensus 81 ~ge~~~AraA~~~gi~~~lss~s~~s~e~v~~~~~~~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r 160 (344)
T cd02922 81 DGELNLARAAGKHGILQMISTNASCSLEEIVDARPPDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKR 160 (344)
T ss_pred hHHHHHHHHHHHcCCCEEecCcccCCHHHHHHhcCCCCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcc
Confidence 999999999999999999999999999998876 34 6899999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHc
Q 020636 166 EADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQA 245 (323)
Q Consensus 166 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~ 245 (323)
++|+|++|..|.++...+.... ....+...+.....++..+|+.++|+++.+++||++|++.+.++|+.+.++
T Consensus 161 ~~d~r~~~~~p~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~ 233 (344)
T cd02922 161 ERDERLKAEEAVSDGPAGKKTK-------AKGGGAGRAMSGFIDPTLTWDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEY 233 (344)
T ss_pred hhhhhhcCCcCccccccccccc-------cccchHHHHHhhccCCCCCHHHHHHHHHhcCCcEEEEcCCCHHHHHHHHHc
Confidence 9999999998866554332111 011122223444567889999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCCCCCCCcchHHHHHHHHHHh---cCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 246 GAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 246 Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
|+|+|+||||||+++|..+++++.|+++.+.+ ++++|||++|||+++.|++|+|++||++|+|||+|+..+.
T Consensus 234 G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~l~ 308 (344)
T cd02922 234 GVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLYALS 308 (344)
T ss_pred CCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHh
Confidence 99999999999999999899999999998753 3479999999999999999999999999999999987654
No 11
>PLN02979 glycolate oxidase
Probab=100.00 E-value=1.2e-63 Score=469.26 Aligned_cols=270 Identities=91% Similarity=1.295 Sum_probs=245.3
Q ss_pred ccccccccccCCCCCccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCc
Q 020636 45 RILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGI 124 (323)
Q Consensus 45 ~i~l~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~ 124 (323)
-|.|+||+|+|++++||+|++||+++++||++||+|+++|.||++|+++|++|+++|++|++|++++.++|||++..+++
T Consensus 43 ~~~lrPRvLrdv~~~dtst~llG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~ss~slEeIa~a~~~~ 122 (366)
T PLN02979 43 FCDFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGI 122 (366)
T ss_pred eeEEECccccCCCCCCCceEECCcccCccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCcCCCHHHHHhccCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999876778
Q ss_pred eeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHH
Q 020636 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV 204 (323)
Q Consensus 125 ~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (323)
.|||||+++|++.++++++||+++||++|++|||+|+.|+|++|+||+|.+|++++++++.+...++.......+...+.
T Consensus 123 ~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (366)
T PLN02979 123 RFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYV 202 (366)
T ss_pred eEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999998776666433211111111223344455
Q ss_pred hhccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 205 AGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 205 ~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
..+.++.++|++|+|+|+.|++||++|++.+.+||+.+.++|+|+|+||||||+++|..+++++.|+++.+.+.+++|||
T Consensus 203 ~~~~~~~ltW~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi 282 (366)
T PLN02979 203 AGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVF 282 (366)
T ss_pred hhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEE
Confidence 56678999999999999999999999999999999999999999999999999999999999999999998886689999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 285 LDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 285 a~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
+|||||++.|++|||++||++|++||+++.
T Consensus 283 ~dGGIr~G~Di~KALALGAdaV~iGrp~L~ 312 (366)
T PLN02979 283 LDGGVRRGTDVFKALALGASGIFIGRPVVF 312 (366)
T ss_pred EeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence 999999999999999999999999999974
No 12
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=100.00 E-value=3e-57 Score=429.28 Aligned_cols=303 Identities=42% Similarity=0.575 Sum_probs=278.5
Q ss_pred hHHHHHHHHHhCChhhhhhhcCCccchHHHHHhHHhhcccccccccccCCCCCccceeecCcccccceEECcccccccCC
Q 020636 7 VMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAH 86 (323)
Q Consensus 7 ~~d~~~~A~~~l~~~~~~y~~~g~~~e~t~~~N~~~~~~i~l~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~ 86 (323)
+.|+++.|++++| ..|+|+.+|+++|.|+++|+++|++|.|+|++|.+++++|++|++||+++++||++|||++++|.|
T Consensus 1 ~~~~~~~a~~~~~-~~~hy~~~~~~~e~t~~~n~~~f~~i~l~~~~L~~v~~idlst~~~G~~l~~Pi~iapmt~g~~~~ 79 (360)
T COG1304 1 VADLRRAAQRRLP-KAFHYIDGGAEDEVTLRRNREAFEDIALRPRVLPEVDDIDLSTTFLGQKLSAPIIIAPMTGGGLAH 79 (360)
T ss_pred CcchHHHHhhhcc-hHhHHHHhhccccccHhhhhhhhhhheeecccCCCcccCccceEecCccccCCEEEeccccccccC
Confidence 3689999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchH
Q 020636 87 PEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRE 166 (323)
Q Consensus 87 ~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~ 166 (323)
+++|...+++|..+|.++++++++++++|++.+..+ ||+|+..+++...++++++..+||+.+++|+|.|+.++|+
T Consensus 80 ~~ge~~~a~~A~~a~~~~i~s~~gs~~ie~~~~~~~----~q~y~~~~R~~~~~~~~~a~n~G~~~lv~t~d~~~~~~r~ 155 (360)
T COG1304 80 PEGEVINAKLAAAAGEPFILSTVGSQRIEEVAAAPP----FQLYFSKDREFAPNLVDRAANAGAKQLVLTVDSPVGGERE 155 (360)
T ss_pred hhhHHHHHHHHHHcCCCeeeeccccCcHHHhhcCcc----hhhhhHHHHHhhHHHHHHHHhcCCcceeeccCccchHHHH
Confidence 999999999999999999999999999999877644 9999989999999999999999999999999999999999
Q ss_pred HHHhhccCCCCccccccccccccCCCccccc----hhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHH
Q 020636 167 ADIKNRFTLPPFLTLKNFQGLDLGKMDEAND----SGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242 (323)
Q Consensus 167 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~ 242 (323)
+|.++++..|+.....++.+....|-.+..+ ..+.++.....+|..+|+++.++++.|.+|+++||+.+++|+..+
T Consensus 156 ~d~~~~i~a~~~~~h~n~~qe~~~p~g~~~~~~~~~~i~~~~~~~~~P~i~ked~~~i~~~~~~~lv~kGV~~~~D~~~a 235 (360)
T COG1304 156 RDAVNGISAPALAIHLNVLQEATQPEGDRDGKGGLDSIAEYVSALSVPVISKEDGAGISKEWAGPLVLKGILAPEDAAGA 235 (360)
T ss_pred HHHHhccCCCcccccccHHHHhcCCcccccccchhhHHHHHHHhcCCCcccHHHHhHHHHhcCCcHHHhCCCCHHHHHhh
Confidence 9999999888777766665533322111111 134556667788999999999999999999999999999999999
Q ss_pred HHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 243 ~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
.+.|+|+|++|||||+++|+++++++.|+++.++++++++|++|||||+|.|++|||++||++|++||+++.
T Consensus 236 ~~tg~~~I~vsnhggrqlD~g~st~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~ 307 (360)
T COG1304 236 GGTGADGIEVSNHGGRQLDWGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFLY 307 (360)
T ss_pred ccCCceEEEEEcCCCccccCCCChHHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhCCchhhhhHHHHH
Confidence 999999999999999999999999999999999998789999999999999999999999999999999875
No 13
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=100.00 E-value=7.1e-53 Score=394.86 Aligned_cols=262 Identities=59% Similarity=0.890 Sum_probs=246.9
Q ss_pred HHHHHHHHHhCChhhhhhhcCCccchHHHHHhHHhhcccccccccccCCCCCccceeecCcccccceEECcccccccCCc
Q 020636 8 MEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87 (323)
Q Consensus 8 ~d~~~~A~~~l~~~~~~y~~~g~~~e~t~~~N~~~~~~i~l~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~ 87 (323)
.||+..|+++||+..|+|+.+|++++.|+++|+..|++|+|+||+|.+++++||+|+|||++++.||+++||++.++.|+
T Consensus 1 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~l~~~~~id~~~~~lg~~~~~Pi~iapm~g~~~~~~ 80 (299)
T cd02809 1 ADLRALARRRLPKAVFDYIDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSKRDTSTTLLGQKLAMPFGIAPTGLQGLAHP 80 (299)
T ss_pred ChHHHHHHHhCCHHHhhhhccccchHHHHHHHHHHHHhceeecccCCCCCCCCCceEECCeecCCCeeeCcccccccCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999998887899
Q ss_pred HHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHH
Q 020636 88 EGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA 167 (323)
Q Consensus 88 ~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~ 167 (323)
+++..++++|+++|+++++|++++.+.+++.+..+++.|+|||...+++.+.++++++++.|+++|.+++|||..+.|
T Consensus 81 ~~~~~la~aa~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~-- 158 (299)
T cd02809 81 DGELATARAAAAAGIPFTLSTVSTTSLEEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRR-- 158 (299)
T ss_pred hHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC--
Confidence 999999999999999999999988999999988778999999987789999999999999999999999999974321
Q ss_pred HHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCC
Q 020636 168 DIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGA 247 (323)
Q Consensus 168 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Ga 247 (323)
..|+.++++++.+++|+++|++.+.++|+.+.++|+
T Consensus 159 --------------------------------------------~~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~ 194 (299)
T cd02809 159 --------------------------------------------LTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGA 194 (299)
T ss_pred --------------------------------------------CCHHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCC
Confidence 357889999999999999999999999999999999
Q ss_pred CEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 248 AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 248 d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
|+|+++||||++.++++++++.++++++.+++++|||++|||+++.|++|+|++|||+|++||+|+..
T Consensus 195 d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l~~ 262 (299)
T cd02809 195 DGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYG 262 (299)
T ss_pred CEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHH
Confidence 99999999999999999999999999988855699999999999999999999999999999998854
No 14
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=99.98 E-value=1.6e-31 Score=253.11 Aligned_cols=233 Identities=26% Similarity=0.316 Sum_probs=177.3
Q ss_pred hHHhhccccccccccc--CCCCCccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCC-----
Q 020636 39 NRNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST----- 111 (323)
Q Consensus 39 N~~~~~~i~l~pr~l~--~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~----- 111 (323)
+...||+|+|+|+.|. +++++||+|+|+|.+++.||+++||+++......-+..+|++|.++|+++++++.+.
T Consensus 18 ~~~~~d~i~l~~~~l~~~~~~~id~s~~~~G~~l~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~ 97 (326)
T cd02811 18 GSTGFDDVRLVHNALPELDLDDIDLSTEFLGKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQRAALEDP 97 (326)
T ss_pred CCCChhhEEEecccCCCCCcccCCCeeEECCceecCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCchhhccCh
Confidence 4567999999999997 889999999999999999999999987521111225799999999999999998742
Q ss_pred ---CCHHHHHhcCC-CceeEEeeecC----ChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCcccccc
Q 020636 112 ---SSVEEVASTGP-GIRFFQLYVYK----DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183 (323)
Q Consensus 112 ---~~~eei~~~~~-~~~~~QLy~~~----d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~ 183 (323)
.+++.+++..+ .+++..+.... +.+...+ .++..+++++.++++++.. ..+|
T Consensus 98 e~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~---~i~~~~adalel~l~~~q~----------~~~~------- 157 (326)
T cd02811 98 ELAESFTVVREAPPNGPLIANLGAVQLNGYGVEEARR---AVEMIEADALAIHLNPLQE----------AVQP------- 157 (326)
T ss_pred hhhhHHHHHHHhCCCceEEeecCccccCCCCHHHHHH---HHHhcCCCcEEEeCcchHh----------hcCC-------
Confidence 12344455555 56566665433 4444333 3445678899998876531 0001
Q ss_pred ccccccCCCccccchhhHHHHhhccCCcc--CHHHHHHHHHhcCCCEEEecc---CCHHHHHHHHHcCCCEEEEcCCCCC
Q 020636 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSL--SWKDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGAR 258 (323)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~i~~~~~~pv~vK~i---~~~e~a~~~~~~Gad~i~vs~~gg~ 258 (323)
..+.++ ..+.|+++++.+++||++|++ .+.++|+.+.++|+|+|+|+|+||+
T Consensus 158 -----------------------~~~~df~~~~~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~GGt 214 (326)
T cd02811 158 -----------------------EGDRDFRGWLERIEELVKALSVPVIVKEVGFGISRETAKRLADAGVKAIDVAGAGGT 214 (326)
T ss_pred -----------------------CCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCC
Confidence 112222 136799999999999999987 7899999999999999999999884
Q ss_pred C---------C-----------CCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 259 Q---------L-----------DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 259 ~---------~-----------~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
. . +.+.++.+.|+++++.+. ++|||++|||+++.|++|+|++|||+|++||+|+..
T Consensus 215 ~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~-~ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~~ 290 (326)
T cd02811 215 SWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALP-DLPLIASGGIRNGLDIAKALALGADLVGMAGPFLKA 290 (326)
T ss_pred cccccccccccccccccccccccccccHHHHHHHHHHHcC-CCcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Confidence 2 1 224566788888887764 799999999999999999999999999999988654
No 15
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=99.97 E-value=3.8e-31 Score=252.54 Aligned_cols=234 Identities=26% Similarity=0.316 Sum_probs=178.7
Q ss_pred Hhhccccccccccc--CCCCCccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCC-------
Q 020636 41 NAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST------- 111 (323)
Q Consensus 41 ~~~~~i~l~pr~l~--~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~------- 111 (323)
..||+|+|.|+.|. +++++||+|+|+|.+++.||+++||+++.--..+-+.++|++|+++|+++++++++.
T Consensus 28 ~~~d~v~l~~~~lp~~~~~~vd~s~~~~g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~~~~~~~~~ 107 (352)
T PRK05437 28 TGFDDVRLIHNALPELDLDDIDLSTEFLGKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQRAALKDPEL 107 (352)
T ss_pred CChheEEEecccCCCCChhhccceeeECCceecCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEecccHhhccChhh
Confidence 36999999999996 889999999999999999999999998521111335799999999999999999752
Q ss_pred -CCHHHHHhcCC-CceeEEeeecCChHH-HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccc
Q 020636 112 -SSVEEVASTGP-GIRFFQLYVYKDRNV-VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD 188 (323)
Q Consensus 112 -~~~eei~~~~~-~~~~~QLy~~~d~~~-~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~ 188 (323)
.+++.+++..| .+++..|+....... .++..+.++..+++++.++++++..-
T Consensus 108 ~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~------------------------- 162 (352)
T PRK05437 108 ADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQEL------------------------- 162 (352)
T ss_pred HHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhh-------------------------
Confidence 12333455454 566776655333122 12333445567889999988765410
Q ss_pred cCCCccccchhhHHHHhhccCCcc--CHHHHHHHHHhcCCCEEEecc---CCHHHHHHHHHcCCCEEEEcCCCCCC----
Q 020636 189 LGKMDEANDSGLAAYVAGQIDRSL--SWKDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQ---- 259 (323)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~i~~~~~~pv~vK~i---~~~e~a~~~~~~Gad~i~vs~~gg~~---- 259 (323)
.++..+.++ ..+.++++++.+++||++|++ .+.++|+.+.++|+|+|+|+|+||+.
T Consensus 163 ---------------~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~i 227 (352)
T PRK05437 163 ---------------VQPEGDRDFRGWLDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGGTSWAAI 227 (352)
T ss_pred ---------------cCCCCcccHHHHHHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECCCCCCCccch
Confidence 001112222 246799999999999999987 78999999999999999999998832
Q ss_pred -----C---------CCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 260 -----L---------DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 260 -----~---------~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
. +.+.++.+.|.++++.+ .++|||++|||+++.|+.|+|++|||+|++||+|+..
T Consensus 228 e~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~-~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~ 296 (352)
T PRK05437 228 ENYRARDDRLASYFADWGIPTAQSLLEARSLL-PDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKA 296 (352)
T ss_pred hhhhhhccccccccccccCCHHHHHHHHHHhc-CCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHH
Confidence 1 34567888999988874 2799999999999999999999999999999998754
No 16
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=99.97 E-value=6.2e-30 Score=242.87 Aligned_cols=229 Identities=25% Similarity=0.346 Sum_probs=170.9
Q ss_pred hhcccccccccc--cCCCCCccceeecCcccccceEECcccccccCCcHH---HHHHHHHHHHcCCceeecCCCC-----
Q 020636 42 AFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEG---EYATARAASAAGTIMTLSSWST----- 111 (323)
Q Consensus 42 ~~~~i~l~pr~l--~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~---e~~~a~aa~~~G~~~~vs~~s~----- 111 (323)
.||+|+|+|..| .+++++||||+|+|+++++||+++||+++ ++.+ +..++++|+++|+++++++.+.
T Consensus 22 ~~~~~~~~~~~lp~~~~~~~d~s~~~~g~~l~~Pi~iaaMtGg---~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~ 98 (333)
T TIGR02151 22 GFDDITLIHNALPEINLDDIDLTTEFLGKRLKAPFYINAMTGG---SEEAGKINRNLARAARELGIPMGVGSQRAALKDP 98 (333)
T ss_pred CcceEEEecCCCCCCCcccCCCceEECCccccCCEEEeCCCCC---chhHHHHHHHHHHHHHHcCCCeEEcCchhhccCh
Confidence 499999999999 57899999999999999999999999875 3322 5699999999999999998652
Q ss_pred ---CCHHHHHhcCC-CceeEEeeecCChHH-HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccc
Q 020636 112 ---SSVEEVASTGP-GIRFFQLYVYKDRNV-VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG 186 (323)
Q Consensus 112 ---~~~eei~~~~~-~~~~~QLy~~~d~~~-~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~ 186 (323)
.+.+.+++..+ .+.+..|......+. ..+..+.++..+++++.++++++.. .
T Consensus 99 ~~~~~~~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~----------~------------- 155 (333)
T TIGR02151 99 ETADTFEVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQE----------L------------- 155 (333)
T ss_pred hhHhHHHHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCccccc----------c-------------
Confidence 12233444333 455555543222111 2233344455678889888876541 0
Q ss_pred cccCCCccccchhhHHHHhhccCCccC-H-HHHHHHHHhcCCCEEEecc---CCHHHHHHHHHcCCCEEEEcCCCCCCC-
Q 020636 187 LDLGKMDEANDSGLAAYVAGQIDRSLS-W-KDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQL- 260 (323)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~i~~i~~~~~~pv~vK~i---~~~e~a~~~~~~Gad~i~vs~~gg~~~- 260 (323)
.++..+.++. | +.++++++.+++||++|.+ .+.++|+.+.++|+|+|+|+++||+..
T Consensus 156 -----------------~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~ 218 (333)
T TIGR02151 156 -----------------VQPEGDRNFKGWLEKIAEICSQLSVPVIVKEVGFGISKEVAKLLADAGVSAIDVAGAGGTSWA 218 (333)
T ss_pred -----------------cCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCccc
Confidence 0011222331 3 6799999999999999977 789999999999999999999988631
Q ss_pred -----------------CCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 261 -----------------DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 261 -----------------~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
+.+.++.+.|.++++ +..++|||++|||+++.|+.|+|++|||+|++||+|+.
T Consensus 219 ~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~-~~~~ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~ 288 (333)
T TIGR02151 219 QVENYRAKGSNLASFFNDWGIPTAASLLEVRS-DAPDAPIIASGGLRTGLDVAKAIALGADAVGMARPFLK 288 (333)
T ss_pred chhhhcccccccchhhhcccHhHHHHHHHHHh-cCCCCeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHH
Confidence 224455667777765 22379999999999999999999999999999999984
No 17
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=99.96 E-value=2e-27 Score=222.08 Aligned_cols=215 Identities=20% Similarity=0.194 Sum_probs=164.1
Q ss_pred hhccccccccccc--CCCCCccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHH--
Q 020636 42 AFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-- 117 (323)
Q Consensus 42 ~~~~i~l~pr~l~--~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei-- 117 (323)
.||+++|+|..+. +++++|++|+|+|.+++.||++++|. . ..|..||++|+++|...++..+ +.|+.
T Consensus 3 ~FddV~lvp~~lp~~s~~dVdlst~~~~~~l~~P~~inAM~-----t-~in~~LA~~a~~~G~~~i~hK~---~~E~~~s 73 (321)
T TIGR01306 3 DYEDIQLIPNKCIVNSRSECDTSVTLGKHKFKLPVVPANMQ-----T-IIDEKLAEQLAENGYFYIMHRF---DEESRIP 73 (321)
T ss_pred CcccEEEecCCCCCCCHHHceeeEEECCcEecCcEEeeccc-----h-hhhHHHHHHHHHcCCEEEEecC---CHHHHHH
Confidence 5999999999884 56799999999999999999999993 2 5788999999999999999874 34443
Q ss_pred --HhcCCCceeEEeeecCChHHHHHHHHHHHHcC--CcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCc
Q 020636 118 --ASTGPGIRFFQLYVYKDRNVVAQLVRRAERAG--FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD 193 (323)
Q Consensus 118 --~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G--~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (323)
.+..+....+-+-....++..+ .++.+.++| .+.++ +|..+
T Consensus 74 fvrk~k~~~L~v~~SvG~t~e~~~-r~~~lv~a~~~~d~i~--~D~ah-------------------------------- 118 (321)
T TIGR01306 74 FIKDMQERGLFASISVGVKACEYE-FVTQLAEEALTPEYIT--IDIAH-------------------------------- 118 (321)
T ss_pred HHHhccccccEEEEEcCCCHHHHH-HHHHHHhcCCCCCEEE--EeCcc--------------------------------
Confidence 2333322233333333444333 334445566 45544 45433
Q ss_pred cccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEec-cCCHHHHHHHHHcCCCEEEEcCCCCCCC--------CCCc
Q 020636 194 EANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHGARQL--------DYVP 264 (323)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~Gad~i~vs~~gg~~~--------~~~~ 264 (323)
++....++.++++|+.++.|+++++ +.+.++|+.+.++|||+|.|++++|+.. ....
T Consensus 119 --------------g~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~ 184 (321)
T TIGR01306 119 --------------GHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGG 184 (321)
T ss_pred --------------CchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCc
Confidence 1222457789999999998866665 9999999999999999999998877642 1223
Q ss_pred chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 265 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 265 ~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
+.+..+.++++++ ++|||+||||+++.|++|||++|||+||+|++|.++.
T Consensus 185 ~~l~ai~ev~~a~--~~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~ag~~ 234 (321)
T TIGR01306 185 WQLAALRWCAKAA--RKPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAGHE 234 (321)
T ss_pred hHHHHHHHHHHhc--CCeEEEECCcCcHHHHHHHHHcCCCEEeechhhcCcc
Confidence 4577899998877 7999999999999999999999999999999998875
No 18
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.95 E-value=3.7e-26 Score=214.44 Aligned_cols=216 Identities=18% Similarity=0.182 Sum_probs=164.9
Q ss_pred hhccccccccccc--CCCCCccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHH-
Q 020636 42 AFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA- 118 (323)
Q Consensus 42 ~~~~i~l~pr~l~--~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~- 118 (323)
.||+++|+|..|. +++++|++|+|+|++++.||++++|. . ..+..||++|+++|...++..+ +.|+..
T Consensus 6 ~Fddv~lv~~~lp~~s~~dvdlst~~~~~~l~~P~~inAM~-----t-~iN~~LA~~a~~~G~~~~~~k~---~~e~~~~ 76 (326)
T PRK05458 6 DYEDIQLIPNKCIVNSRSECDTSVTLGPRTFKLPVVPANMQ-----T-IIDEKIAEWLAENGYFYIMHRF---DPEARIP 76 (326)
T ss_pred CccceEEecCCCCCCCHHHcccceEECCcEecCcEEEeccc-----c-hhHHHHHHHHHHcCCEEEEecC---CHHHHHH
Confidence 4999999999884 66799999999999999999999993 2 5788999999999999888863 345432
Q ss_pred ---hcCCCceeEEeeecCChHHHHHHHHHHHHcCC--cEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCc
Q 020636 119 ---STGPGIRFFQLYVYKDRNVVAQLVRRAERAGF--KAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD 193 (323)
Q Consensus 119 ---~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~--~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (323)
+..+...+..+-...+++.. +.++.+.++|+ +.|. +|+...
T Consensus 77 ~~r~~~~~~l~v~~~vg~~~~~~-~~~~~Lv~ag~~~d~i~--iD~a~g------------------------------- 122 (326)
T PRK05458 77 FIKDMHEQGLIASISVGVKDDEY-DFVDQLAAEGLTPEYIT--IDIAHG------------------------------- 122 (326)
T ss_pred HHHhccccccEEEEEecCCHHHH-HHHHHHHhcCCCCCEEE--EECCCC-------------------------------
Confidence 23343334445444444433 33444556655 7665 555431
Q ss_pred cccchhhHHHHhhccCCccCHHHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCC------CCcc-
Q 020636 194 EANDSGLAAYVAGQIDRSLSWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD------YVPA- 265 (323)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~------~~~~- 265 (323)
+.....+.|+++|+.++ .||++|.+.|.++++.+.++|+|+|.+++++|+... .+.+
T Consensus 123 ---------------h~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~ 187 (326)
T PRK05458 123 ---------------HSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGG 187 (326)
T ss_pred ---------------chHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCc
Confidence 11123556999999996 777777899999999999999999999999996532 2344
Q ss_pred -hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 266 -TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 266 -~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
.+..+.++++.+ ++|||++|||+++.|+.|+|++||++||+|++|.++.+
T Consensus 188 w~l~ai~~~~~~~--~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~~~~e 238 (326)
T PRK05458 188 WQLAALRWCAKAA--RKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGHEE 238 (326)
T ss_pred cHHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHhCCCEEEechhhcCCcc
Confidence 455688888877 79999999999999999999999999999999987543
No 19
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=99.94 E-value=4.4e-26 Score=211.63 Aligned_cols=218 Identities=22% Similarity=0.210 Sum_probs=167.0
Q ss_pred hhccccccccc--ccCCCCCccceeecCc-----ccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCH
Q 020636 42 AFSRILFRPRI--LIDVSKIDMNTTVLGF-----KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSV 114 (323)
Q Consensus 42 ~~~~i~l~pr~--l~~~~~~d~~t~i~g~-----~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~ 114 (323)
.|+++.|+|+. +...+++|++++|..+ .+..||+-|.|-.. ++..+|.+.+++|...+++-+ .++
T Consensus 9 ~f~DVll~P~~s~v~sR~evdl~~~~~~~~~~~~~~~iPii~AnMdtv------~~~~mA~~la~~g~~~~iHk~--~~~ 80 (343)
T TIGR01305 9 DFKDVLLRPKRSTLKSRADVELERTFTFRNSKQTYSGVPIIAANMDTV------GTFEMAAALSQHSIFTAIHKH--YSV 80 (343)
T ss_pred CccceEEecCcCccCcHHHceeeEEEccccCCceeeCCceEecCCCcc------cCHHHHHHHHHCCCeEEEeeC--CCH
Confidence 69999999974 3455899999999744 78999999998543 677999999999999999963 345
Q ss_pred HHHH----hcCCCc-eeEEeeecCChHHHHHHHHHHHHcC--CcEEEEecCCCCCCchHHHHhhccCCCCcccccccccc
Q 020636 115 EEVA----STGPGI-RFFQLYVYKDRNVVAQLVRRAERAG--FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL 187 (323)
Q Consensus 115 eei~----~~~~~~-~~~QLy~~~d~~~~~~~~~~a~~~G--~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~ 187 (323)
|+.. ...+.. ...-+-..-.++ ..+.++.+.+++ ++.|+ +|+.+
T Consensus 81 e~~~~~v~~~~~~~~~~~~vsvG~~~~-d~er~~~L~~a~~~~d~iv--iD~Ah-------------------------- 131 (343)
T TIGR01305 81 DEWKAFATNSSPDCLQNVAVSSGSSDN-DLEKMTSILEAVPQLKFIC--LDVAN-------------------------- 131 (343)
T ss_pred HHHHHHHHhhcccccceEEEEeccCHH-HHHHHHHHHhcCCCCCEEE--EECCC--------------------------
Confidence 5532 222211 111111122222 233445555554 67666 45433
Q ss_pred ccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEec-cCCHHHHHHHHHcCCCEEEEc-----CCCCCCCC
Q 020636 188 DLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS-----NHGARQLD 261 (323)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~Gad~i~vs-----~~gg~~~~ 261 (323)
++.....+.|+|||+.|+.+.++|| +.|+|+|+.++++|||+|.|+ +|++|+.+
T Consensus 132 --------------------Ghs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~ 191 (343)
T TIGR01305 132 --------------------GYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKT 191 (343)
T ss_pred --------------------CcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCceeC
Confidence 1222357789999999988888888 999999999999999999998 88899998
Q ss_pred CCc-chHHHHHHHHHHhcC-CCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 262 YVP-ATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 262 ~~~-~~~~~l~~i~~~~~~-~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
+.+ |.+++++++++++.. ++|||+||||+++.|++|||++|||+||+|++|.++.
T Consensus 192 Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~llAG~~ 248 (343)
T TIGR01305 192 GVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLGGMFAGHT 248 (343)
T ss_pred CCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEECHhhhCcC
Confidence 876 899999999998865 7999999999999999999999999999999998865
No 20
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.91 E-value=8.7e-23 Score=195.31 Aligned_cols=249 Identities=19% Similarity=0.246 Sum_probs=157.9
Q ss_pred hhcccccccccc--cCCCCCccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCC----CCCCHH
Q 020636 42 AFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW----STSSVE 115 (323)
Q Consensus 42 ~~~~i~l~pr~l--~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~----s~~~~e 115 (323)
.||++.|+|. + .+.+++|+++.+.+..++.||+++||.+. ++..++.+++++|...+++.. ...+.+
T Consensus 17 ~fddV~lvp~-~~~~~~~dvdls~~~~~~~i~~Piv~a~M~gV------t~~~la~avs~~GglGvl~~~gl~~~~~~~e 89 (368)
T PRK08649 17 GLDEIAIVPS-RRTRDPEDVSTSWQIDAYRFEIPIIASPMDAV------VSPETAIELGKLGGLGVLNLEGLWTRYEDPE 89 (368)
T ss_pred CcceEEEeCC-CCCCCHHHceeeeeecceeccCcEeccCCccc------CCHHHHHHHHhCCCceEEeeccccccCCCHH
Confidence 6999999998 4 45688999999999999999999999764 455899999999997777721 122344
Q ss_pred HHHh----cCCC---ceeEEeee-cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCcccccccccc
Q 020636 116 EVAS----TGPG---IRFFQLYV-YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL 187 (323)
Q Consensus 116 ei~~----~~~~---~~~~QLy~-~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~ 187 (323)
++.+ ..+. ...-++|. +.+++.+.++++.+++++ +.+++... .....++-... ...++..-.+.+
T Consensus 90 ~l~~qi~~~~~~~~~~~~~~~~~~P~~p~l~~~iv~~~~~~~---V~v~vr~~--~~~~~e~a~~l-~eaGvd~I~vhg- 162 (368)
T PRK08649 90 PILDEIASLGKDEATRLMQELYAEPIKPELITERIAEIRDAG---VIVAVSLS--PQRAQELAPTV-VEAGVDLFVIQG- 162 (368)
T ss_pred HHHHHHHhcCcHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCe---EEEEEecC--CcCHHHHHHHH-HHCCCCEEEEec-
Confidence 4332 1110 00011111 345677777777777654 22222210 00011110000 000011000000
Q ss_pred ccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCC------CC
Q 020636 188 DLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LD 261 (323)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~------~~ 261 (323)
... -..| ..+.-.|+.+.++++..++||+.+.+.+.++|+.+.++|||+|.+..++|+. ..
T Consensus 163 --------rt~-~~~h----~~~~~~~~~i~~~ik~~~ipVIaG~V~t~e~A~~l~~aGAD~V~VG~G~Gs~~~t~~~~g 229 (368)
T PRK08649 163 --------TVV-SAEH----VSKEGEPLNLKEFIYELDVPVIVGGCVTYTTALHLMRTGAAGVLVGIGPGAACTSRGVLG 229 (368)
T ss_pred --------cch-hhhc----cCCcCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcCCCCcccCC
Confidence 000 0001 1112257777777777899999989999999999999999999986444421 11
Q ss_pred CCcchHHHHHHHHHHhc--------CCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 262 YVPATIMALEEVVKATQ--------GRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 262 ~~~~~~~~l~~i~~~~~--------~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
.+.|.+..+.++.+... .++|||++|||+++.|++|||++|||+||+|++|+++.+
T Consensus 230 ~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t~E 293 (368)
T PRK08649 230 IGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAE 293 (368)
T ss_pred CCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCCCeecccchhccccc
Confidence 24567777777664321 148999999999999999999999999999999998654
No 21
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=99.90 E-value=8.5e-23 Score=193.28 Aligned_cols=218 Identities=23% Similarity=0.306 Sum_probs=162.2
Q ss_pred hhcccccccccc-cCCCCCccceeecC-cccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 020636 42 AFSRILFRPRIL-IDVSKIDMNTTVLG-FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (323)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~~d~~t~i~g-~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~ 119 (323)
.||++.|+|... .+.+++|++|+|.+ ..++.||+.|||.+. ++..++.+.+++|...+++.. .+.++..+
T Consensus 3 ~~ddv~l~p~~~~~~~~~vdl~t~l~~~~~l~~Piv~apM~~v------t~~~ma~ava~~GglGvi~~~--~~~~~~~~ 74 (325)
T cd00381 3 TFDDVLLVPGYSTVLPSEVDLSTKLTKNITLNIPLVSAPMDTV------TESEMAIAMARLGGIGVIHRN--MSIEEQAE 74 (325)
T ss_pred CcccEEEeCCCCCCCHHHceeeEEecCccccCCCEEecCCCcC------CcHHHHHHHHHCCCEEEEeCC--CCHHHHHH
Confidence 599999999765 56788999999988 889999999999764 455899999999998887743 34455432
Q ss_pred ----cCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccc
Q 020636 120 ----TGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA 195 (323)
Q Consensus 120 ----~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (323)
..+.....+.. ..+++ ..+.++.+.++|++.|+++. .. |
T Consensus 75 ~i~~vk~~l~v~~~~-~~~~~-~~~~~~~l~eagv~~I~vd~--~~-G-------------------------------- 117 (325)
T cd00381 75 EVRKVKGRLLVGAAV-GTRED-DKERAEALVEAGVDVIVIDS--AH-G-------------------------------- 117 (325)
T ss_pred HHHHhccCceEEEec-CCChh-HHHHHHHHHhcCCCEEEEEC--CC-C--------------------------------
Confidence 22222233332 22322 34556666678998887653 11 0
Q ss_pred cchhhHHHHhhccCCccCHHHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCC------CCCCCcchHH
Q 020636 196 NDSGLAAYVAGQIDRSLSWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR------QLDYVPATIM 268 (323)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~------~~~~~~~~~~ 268 (323)
++...++.++++++..+ +|+++..+.+.++|+.+.++|+|+|+++..+|. ....+.+.+.
T Consensus 118 -------------~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~ 184 (325)
T cd00381 118 -------------HSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQAT 184 (325)
T ss_pred -------------CcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHH
Confidence 11123567889998874 888888899999999999999999999543321 1234567888
Q ss_pred HHHHHHHHhcC-CCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 269 ALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 269 ~l~~i~~~~~~-~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
.+.++.+.+.. ++|||++|||+++.|+.|+|++||++||+||+|+++.+
T Consensus 185 ~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~t~E 234 (325)
T cd00381 185 AVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDE 234 (325)
T ss_pred HHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEecchhccccc
Confidence 88888876632 59999999999999999999999999999999999764
No 22
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=99.90 E-value=1.9e-22 Score=190.69 Aligned_cols=214 Identities=18% Similarity=0.173 Sum_probs=164.9
Q ss_pred eecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCC-H------H-HHHhc--CCCceeEEeeecC
Q 020636 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSS-V------E-EVAST--GPGIRFFQLYVYK 133 (323)
Q Consensus 64 ~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~-~------e-ei~~~--~~~~~~~QLy~~~ 133 (323)
+|.+.+++.|+++|||++. ++.++++.|.++|..++++++-+.. + . ..... .+.+..+||+ ..
T Consensus 2 ~i~~~~~~~~~~lAPM~g~------td~~fR~l~~~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~-g~ 74 (321)
T PRK10415 2 RIGQYQLRNRLIAAPMAGI------TDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIA-GS 74 (321)
T ss_pred ccCCccCCCCEEecCCCCC------CcHHHHHHHHHHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEe-CC
Confidence 3566788899999999875 5779999999999999888874421 1 0 01111 1246679997 57
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccC
Q 020636 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (323)
Q Consensus 134 d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (323)
|++.+.+.++++++.|++.|.+|++||+. ++. ..+.|+++ ..+|++.
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~---------------~v~------------~~g~Gs~l------l~~p~~~ 121 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAK---------------KVN------------RKLAGSAL------LQYPDLV 121 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHH---------------HHc------------CCCcccHH------hcCHHHH
Confidence 88888888888888999999999999972 000 01112222 2367788
Q ss_pred HHHHHHHHHhcCCCEEEecc----C----CHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEE
Q 020636 214 WKDVKWLQTITKLPILVKGV----L----TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK~i----~----~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia 285 (323)
.+.++.+++.++.|+.+|.. . ..+-++.+.++|+|.|.+++....+...+...++.+.++++.+ ++|||+
T Consensus 122 ~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~--~iPVI~ 199 (321)
T PRK10415 122 KSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKV--SIPVIA 199 (321)
T ss_pred HHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhc--CCcEEE
Confidence 88899999999999999963 1 2355778899999999996544334445667889999999988 899999
Q ss_pred ecCCCCHHHHHHHHH-cCCCEEEEccccccCcchh
Q 020636 286 DGGVRRGTDVFKALA-LGASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 286 ~GGI~~~~di~kal~-lGAd~V~iG~~~~~~~~~~ 319 (323)
+|||.|++|+.+++. .|||+||+||+++++|+.-
T Consensus 200 nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP~if 234 (321)
T PRK10415 200 NGDITDPLKARAVLDYTGADALMIGRAAQGRPWIF 234 (321)
T ss_pred eCCCCCHHHHHHHHhccCCCEEEEChHhhcCChHH
Confidence 999999999999997 6999999999999999753
No 23
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.90 E-value=6.6e-23 Score=195.73 Aligned_cols=252 Identities=19% Similarity=0.208 Sum_probs=158.8
Q ss_pred HHhhcccccccc-cccCCCCCccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCC----CCCCH
Q 020636 40 RNAFSRILFRPR-ILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW----STSSV 114 (323)
Q Consensus 40 ~~~~~~i~l~pr-~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~----s~~~~ 114 (323)
...||+|.|+|. .-++.+++||++.+.+.+++.||++|||++. .+.+++.++.++|.+.+++.- .....
T Consensus 12 ~~~~d~i~~vp~~~t~~~~~v~~~~~i~~~~l~~PivlAPMagV------td~~fr~~~~~~Galgvvsaegl~~~~~~~ 85 (369)
T TIGR01304 12 TYSLDDISVVPSRRTRSSKDVDTAWQIDAYRFELPFIAHPMDAL------VSPEFAIELGELGGLGVLNLEGLWGRHEDP 85 (369)
T ss_pred cCCcceEEEcCCCCCCChhhccceeEEcceecCCceeecCCCcc------cCHHHHHHHHHcCCcccccchHHHhcCCCH
Confidence 558999999996 5588899999999999999999999999875 455999999999997777631 11111
Q ss_pred HH----HHhcCCC-------ceeEEeee-cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccc
Q 020636 115 EE----VASTGPG-------IRFFQLYV-YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182 (323)
Q Consensus 115 ee----i~~~~~~-------~~~~QLy~-~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~ 182 (323)
+. |...... ....++|. +.+++.+.++++.++++++. +-+-++ | ....++-... +..++.+-
T Consensus 86 ~~~~~QI~g~~~~~~~a~aa~~~~e~~~~~~~p~l~~~ii~~vr~a~Vt-vkiRl~-~---~~~~e~a~~l-~eAGad~I 159 (369)
T TIGR01304 86 DPAIAKIAEAYEEGDQAAATRLLQELHAAPLKPELLGERIAEVRDSGVI-TAVRVS-P---QNAREIAPIV-VKAGADLL 159 (369)
T ss_pred HHHHHHHhhcCCChHHHHHHHHHHHcCCCccChHHHHHHHHHHHhcceE-EEEecC-C---cCHHHHHHHH-HHCCCCEE
Confidence 21 1111000 00011111 23566666666666665521 112221 1 0111110000 00000000
Q ss_pred cccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCC--
Q 020636 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL-- 260 (323)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~-- 260 (323)
.+. +. . ....+. ...-.|..+.++++..++||+++++.+.++|+.+.++|||+|.++.+|+...
T Consensus 160 ~ih----gr-----t-~~q~~~----sg~~~p~~l~~~i~~~~IPVI~G~V~t~e~A~~~~~aGaDgV~~G~gg~~~~~~ 225 (369)
T TIGR01304 160 VIQ----GT-----L-VSAEHV----STSGEPLNLKEFIGELDVPVIAGGVNDYTTALHLMRTGAAGVIVGPGGANTTRL 225 (369)
T ss_pred EEe----cc-----c-hhhhcc----CCCCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCccccc
Confidence 000 00 0 000010 1123588888888889999999899999999999999999998654444221
Q ss_pred --CCCcchHHHHHHHHHHh-------cC-CCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 261 --DYVPATIMALEEVVKAT-------QG-RIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 261 --~~~~~~~~~l~~i~~~~-------~~-~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
..+.+....+.++.++. ++ .+|||++|||+++.|++|+|++|||+|++|++|+.+.+
T Consensus 226 ~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a~E 292 (369)
T TIGR01304 226 VLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVLGSPLARAAE 292 (369)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhhhc
Confidence 22456666777765432 22 49999999999999999999999999999999987643
No 24
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.89 E-value=5.5e-22 Score=187.68 Aligned_cols=212 Identities=22% Similarity=0.226 Sum_probs=162.2
Q ss_pred ecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCC-CC-------HHHHHhcC--CCceeEEeeecCC
Q 020636 65 VLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST-SS-------VEEVASTG--PGIRFFQLYVYKD 134 (323)
Q Consensus 65 i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~-~~-------~eei~~~~--~~~~~~QLy~~~d 134 (323)
|.|.+++.|+++|||.+. ++.++++.++++|..++.+++.+ .+ ..++.... +.+..+||. ..+
T Consensus 1 ~~~~~~~~~l~lAPm~~~------t~~~fR~l~~~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~-g~~ 73 (319)
T TIGR00737 1 IGNIQLKSRVVLAPMAGV------TDSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLF-GSD 73 (319)
T ss_pred CCCccCCCCEEecCCCCC------CcHHHHHHHHHHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEe-CCC
Confidence 356788999999999875 56799999999999888888732 11 12222222 257899997 578
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCH
Q 020636 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW 214 (323)
Q Consensus 135 ~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (323)
++.+.+.+++++++|+++|.||+.||.. +|.+. +.|+.+ ..+|++..
T Consensus 74 ~~~~~~aa~~~~~~G~d~IelN~gcP~~-~~~~~--------------------------~~Gs~l------~~~~~~~~ 120 (319)
T TIGR00737 74 PDTMAEAAKINEELGADIIDINMGCPVP-KITKK--------------------------GAGSAL------LRDPDLIG 120 (319)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCCCHH-HhcCC--------------------------CccchH------hCCHHHHH
Confidence 8889999999999999999999999952 11100 011111 12566778
Q ss_pred HHHHHHHHhcCCCEEEecc--------CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEe
Q 020636 215 KDVKWLQTITKLPILVKGV--------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 286 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~vK~i--------~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~ 286 (323)
+.++++++.++.||.+|.. ...+.++.+.++|+|.|.++++...+...++..++.+.++++.+ ++|||++
T Consensus 121 ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~ipvi~n 198 (319)
T TIGR00737 121 KIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAV--RIPVIGN 198 (319)
T ss_pred HHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcC--CCcEEEe
Confidence 8899999999999999953 12455788899999999996543222233456788999999888 7999999
Q ss_pred cCCCCHHHHHHHHH-cCCCEEEEccccccCcch
Q 020636 287 GGVRRGTDVFKALA-LGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 287 GGI~~~~di~kal~-lGAd~V~iG~~~~~~~~~ 318 (323)
|||.+++|+.++++ .|||+||+||+++.+|++
T Consensus 199 GgI~~~~da~~~l~~~gad~VmigR~~l~~P~l 231 (319)
T TIGR00737 199 GDIFSPEDAKAMLETTGCDGVMIGRGALGNPWL 231 (319)
T ss_pred CCCCCHHHHHHHHHhhCCCEEEEChhhhhCChH
Confidence 99999999999994 789999999999999975
No 25
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.89 E-value=1.7e-21 Score=187.35 Aligned_cols=219 Identities=21% Similarity=0.233 Sum_probs=154.2
Q ss_pred Hhhcccccccccc-cCCCCCccceeec-CcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHH
Q 020636 41 NAFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (323)
Q Consensus 41 ~~~~~i~l~pr~l-~~~~~~d~~t~i~-g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~ 118 (323)
..||++.|+|... ...+++|++|.+. ...+..||+.|||... ++..+|.+.+++|...+++. ..+.|++.
T Consensus 10 ltfdDvll~P~~s~~~~~~vdl~t~lt~~l~l~iPIvsApMd~V------t~~~lA~AvA~aGGlGvI~~--~~~~e~l~ 81 (404)
T PRK06843 10 LTFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTV------TESQMAIAIAKEGGIGIIHK--NMSIEAQR 81 (404)
T ss_pred cCccceEEccCCCccCHHhccccchhhhccCCCCCEecCCCCCC------CCHHHHHHHHHCCCEEEecC--CCCHHHHH
Confidence 3699999999765 4567889999885 5678999999999764 34589999999999999984 35566543
Q ss_pred hcC------C--Ccee------------------E------------------------Eeee----cCChHHHHHHHHH
Q 020636 119 STG------P--GIRF------------------F------------------------QLYV----YKDRNVVAQLVRR 144 (323)
Q Consensus 119 ~~~------~--~~~~------------------~------------------------QLy~----~~d~~~~~~~~~~ 144 (323)
+.. . .... + ||+. ...++ +.+.++.
T Consensus 82 ~eI~~vk~~~~~~~i~~~~d~~~~~~~~~t~~~~~~~~~~~~d~~~~~~~~~a~~d~~~~l~v~aavg~~~~-~~~~v~~ 160 (404)
T PRK06843 82 KEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDID-TIERVEE 160 (404)
T ss_pred HHHHHHHhhcCCCceeecccccccchhheeccccchHHHHHhhhhhhhhcchhhhhhhcCeEEEEEEeCCHH-HHHHHHH
Confidence 211 0 0000 0 0111 11111 2334444
Q ss_pred HHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhc
Q 020636 145 AERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT 224 (323)
Q Consensus 145 a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~ 224 (323)
+.++|++.|+| |+.. +++...++.++++++.+
T Consensus 161 lv~aGvDvI~i--D~a~----------------------------------------------g~~~~~~~~v~~ik~~~ 192 (404)
T PRK06843 161 LVKAHVDILVI--DSAH----------------------------------------------GHSTRIIELVKKIKTKY 192 (404)
T ss_pred HHhcCCCEEEE--ECCC----------------------------------------------CCChhHHHHHHHHHhhC
Confidence 44556655543 3321 12223467899999998
Q ss_pred -CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCC-----CCCCC-CcchHHHHHHHHHHhc-CCCeEEEecCCCCHHHHH
Q 020636 225 -KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGA-----RQLDY-VPATIMALEEVVKATQ-GRIPVFLDGGVRRGTDVF 296 (323)
Q Consensus 225 -~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg-----~~~~~-~~~~~~~l~~i~~~~~-~~~pvia~GGI~~~~di~ 296 (323)
+.+++++++.|.++|+.+.++|+|+|.++...| +..++ +.|.+..+.++.+.+. .++|||++|||+++.|+.
T Consensus 193 p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~ 272 (404)
T PRK06843 193 PNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVV 272 (404)
T ss_pred CCCcEEEEecCCHHHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHH
Confidence 688999999999999999999999999853222 33333 4567777766665542 269999999999999999
Q ss_pred HHHHcCCCEEEEccccccCc
Q 020636 297 KALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 297 kal~lGAd~V~iG~~~~~~~ 316 (323)
|||++||++||+|++|.++.
T Consensus 273 KALalGA~aVmvGs~~agt~ 292 (404)
T PRK06843 273 KAIAAGADSVMIGNLFAGTK 292 (404)
T ss_pred HHHHcCCCEEEEcceeeeee
Confidence 99999999999999998864
No 26
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=99.88 E-value=1.2e-21 Score=184.20 Aligned_cols=206 Identities=17% Similarity=0.180 Sum_probs=158.8
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcC-CceeecCCCCC--------CHHHHHh------c--CCCceeEEeeecCC
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAG-TIMTLSSWSTS--------SVEEVAS------T--GPGIRFFQLYVYKD 134 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G-~~~~vs~~s~~--------~~eei~~------~--~~~~~~~QLy~~~d 134 (323)
+|+++|||++. ++.++++.|.++| ...++++|.+. ....+.. . .+.+..+||+ ..|
T Consensus 1 ~~~~lAPMag~------td~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~-g~~ 73 (312)
T PRK10550 1 MRVLLAPMEGV------LDSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLL-GQY 73 (312)
T ss_pred CCeEEECCCCC------cCHHHHHHHHHhCCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEec-cCC
Confidence 58999999885 5779999999999 78889987431 1111111 1 1267999998 578
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCH
Q 020636 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW 214 (323)
Q Consensus 135 ~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (323)
++.+.+.++++++.|++.|.||++||+. ++. +.+.|+++ ..+|++..
T Consensus 74 p~~~~~aA~~~~~~g~d~IdiN~GCP~~---------------~v~------------~~g~Gs~L------l~~~~~~~ 120 (312)
T PRK10550 74 PQWLAENAARAVELGSWGVDLNCGCPSK---------------TVN------------GSGGGATL------LKDPELIY 120 (312)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCch---------------HHh------------cCCCchHh------hcCHHHHH
Confidence 9988888999999999999999999972 110 01122222 23677788
Q ss_pred HHHHHHHHhcC--CCEEEecc---C----CHHHHHHHHHcCCCEEEEcCCCCCCCCCCcc-hHHHHHHHHHHhcCCCeEE
Q 020636 215 KDVKWLQTITK--LPILVKGV---L----TAEDARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 215 ~~i~~i~~~~~--~pv~vK~i---~----~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~pvi 284 (323)
+.++.+++.++ +||.+|.. . ..+-++.+.++|+|.|.|+++...+...+++ .++.+.++++.+ ++|||
T Consensus 121 eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~--~iPVi 198 (312)
T PRK10550 121 QGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRL--TIPVI 198 (312)
T ss_pred HHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhc--CCcEE
Confidence 88999999884 89999943 2 2345788889999999996554434444443 788999999988 89999
Q ss_pred EecCCCCHHHHHHHHH-cCCCEEEEccccccCcchh
Q 020636 285 LDGGVRRGTDVFKALA-LGASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 285 a~GGI~~~~di~kal~-lGAd~V~iG~~~~~~~~~~ 319 (323)
++|||.|++|+.++++ .|||+|||||.++++||+=
T Consensus 199 ~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~nP~lf 234 (312)
T PRK10550 199 ANGEIWDWQSAQQCMAITGCDAVMIGRGALNIPNLS 234 (312)
T ss_pred EeCCcCCHHHHHHHHhccCCCEEEEcHHhHhCcHHH
Confidence 9999999999999996 6899999999999999864
No 27
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=99.88 E-value=9.6e-22 Score=185.74 Aligned_cols=219 Identities=22% Similarity=0.289 Sum_probs=150.6
Q ss_pred hhcccccccccc---cCCCCCccceee-cCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHH-
Q 020636 42 AFSRILFRPRIL---IDVSKIDMNTTV-LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEE- 116 (323)
Q Consensus 42 ~~~~i~l~pr~l---~~~~~~d~~t~i-~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~ee- 116 (323)
.||++.|+|... .+..++|+++.+ -+.+++.||+-|||... +|..+|.+.++.|...++.-. .++|+
T Consensus 4 tfdDVllvP~~s~v~~s~~dv~~~~~~~~~~~l~iPivsa~MDtV------te~~mAiama~~Gglgvih~~--~~~e~q 75 (352)
T PF00478_consen 4 TFDDVLLVPGRSTVLPSRSDVSLSTKLTRNITLKIPIVSAPMDTV------TESEMAIAMARLGGLGVIHRN--MSIEEQ 75 (352)
T ss_dssp -GGGEEEE--SBSSTGGGGG-BEEEESSTSEEESSSEEE-SSTTT------SSHHHHHHHHHTTSEEEEESS--SCHHHH
T ss_pred ccccEEEecCCCCCCCCHhheECcccccCCEeecCceEecCcccc------chHHHHHHHHHhcCCceecCC--CCHHHH
Confidence 599999999764 455566666556 68899999999998543 466899999999999999864 34443
Q ss_pred ------HHhcCC-------CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCcccccc
Q 020636 117 ------VASTGP-------GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183 (323)
Q Consensus 117 ------i~~~~~-------~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~ 183 (323)
+.+..| +...+-......++ ..+.++.+.++|++.|+| |+.+.
T Consensus 76 ~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~-~~er~~~L~~agvD~ivI--D~a~g--------------------- 131 (352)
T PF00478_consen 76 AEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDD-DFERAEALVEAGVDVIVI--DSAHG--------------------- 131 (352)
T ss_dssp HHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTC-HHHHHHHHHHTT-SEEEE--E-SST---------------------
T ss_pred HHHHhhhccccccccccccccceEEEEecCCHH-HHHHHHHHHHcCCCEEEc--cccCc---------------------
Confidence 222111 12222222222221 234455566789998875 43331
Q ss_pred ccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCC--
Q 020636 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL-- 260 (323)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~-- 260 (323)
+.....+.++++|+.++ +||+...+.|.+-++.+.++|||+|.|.-.+|.-.
T Consensus 132 -------------------------~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVGiGpGsiCtT 186 (352)
T PF00478_consen 132 -------------------------HSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVGIGPGSICTT 186 (352)
T ss_dssp -------------------------TSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEESSSSSTTBHH
T ss_pred -------------------------cHHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEEeccCCccccc
Confidence 11123567899999996 99999999999999999999999999975545322
Q ss_pred ----CCCcchHHHHHHHHHHhcC-CCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 261 ----DYVPATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 261 ----~~~~~~~~~l~~i~~~~~~-~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
-.+.|.+.++.++.++... .+|||+||||+++.|+.|||++|||+||+|++|.++.+
T Consensus 187 r~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~GAd~VMlG~llAgt~E 248 (352)
T PF00478_consen 187 REVTGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDE 248 (352)
T ss_dssp HHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHHTT-SEEEESTTTTTBTT
T ss_pred ccccccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeeeeecccceeechhhccCcC
Confidence 2256788888888877642 69999999999999999999999999999999998764
No 28
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=2.5e-21 Score=182.87 Aligned_cols=214 Identities=21% Similarity=0.201 Sum_probs=169.1
Q ss_pred eecCcccccceEECcccccccCCcHHHHHHHHHHHHcCC-ceeecCCCCC---------CHHHHHhc-CCCceeEEeeec
Q 020636 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSWSTS---------SVEEVAST-GPGIRFFQLYVY 132 (323)
Q Consensus 64 ~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~-~~~vs~~s~~---------~~eei~~~-~~~~~~~QLy~~ 132 (323)
.+....++.++++|||++. +|..+++.++++|. ..++|+|.+. ++..+... .+.+..+||. .
T Consensus 3 ~~~~~~~~~~~~lAPM~gv------td~~fR~l~~~~ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~-g 75 (323)
T COG0042 3 KIGLIELRNRVILAPMAGV------TDLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQLG-G 75 (323)
T ss_pred ccccccccCcEEEecCCCC------ccHHHHHHHHHhCCCceEEEccEEEhhhccCCcchhhhcCcCCCCCCEEEEec-C
Confidence 3456677899999999875 67899999999999 9999987431 11111111 1367899997 5
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCcc
Q 020636 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (323)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (323)
.|++.+.+..+.+++.|++.|.||++||+. ++. ..+.|+++ ..+|++
T Consensus 76 sdp~~l~eaA~~~~~~g~~~IdlN~GCP~~---------------~V~------------~~g~Ga~L------l~~p~l 122 (323)
T COG0042 76 SDPELLAEAAKIAEELGADIIDLNCGCPSP---------------KVV------------KGGAGAAL------LKNPEL 122 (323)
T ss_pred CCHHHHHHHHHHHHhcCCCEEeeeCCCChH---------------Hhc------------CCCcchhh------cCCHHH
Confidence 889999999999999999999999999973 111 11223333 247888
Q ss_pred CHHHHHHHHHhcC-CCEEEecc---C-----CHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeE
Q 020636 213 SWKDVKWLQTITK-LPILVKGV---L-----TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 213 ~~~~i~~i~~~~~-~pv~vK~i---~-----~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
..+.|+.+++.++ +||.||.. . ..+-++.+.++|++.+.|+++...+...++..++.+.++++.++. +||
T Consensus 123 v~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~-ipv 201 (323)
T COG0042 123 LAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPS-IPV 201 (323)
T ss_pred HHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCCC-CeE
Confidence 8889999999995 99999943 1 235688999999999999655444555667899999999999942 999
Q ss_pred EEecCCCCHHHHHHHHH-cCCCEEEEccccccCcch
Q 020636 284 FLDGGVRRGTDVFKALA-LGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 284 ia~GGI~~~~di~kal~-lGAd~V~iG~~~~~~~~~ 318 (323)
|++|+|.|.+|+.+.|+ .|||+||+||..+++|+-
T Consensus 202 i~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l 237 (323)
T COG0042 202 IANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWL 237 (323)
T ss_pred EeCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCcH
Confidence 99999999999999999 689999999999999984
No 29
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=99.86 E-value=3e-20 Score=174.31 Aligned_cols=215 Identities=22% Similarity=0.272 Sum_probs=151.1
Q ss_pred ccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeec-CCCCC--------------------------
Q 020636 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTS-------------------------- 112 (323)
Q Consensus 60 d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~s~~-------------------------- 112 (323)
|++|+++|.+|++||++|+-... .+....+.+..+|..+++. |.+..
T Consensus 1 ~l~~~~~Gl~l~nPi~~aag~~~------~~~~~~~~~~~~G~Gavv~kti~~~~~~~gn~~pr~~~~~~~~~n~~g~~n 74 (299)
T cd02940 1 DLSVTFCGIKFPNPFGLASAPPT------TSYPMIRRAFEAGWGGAVTKTLGLDKDIVTNVSPRIARLRTSGRGQIGFNN 74 (299)
T ss_pred CCceEECCEEcCCCCEeCCcCCC------CCHHHHHHHHHhCCCEEEeccccCcCCCCCCCCCeEEEeCCCchhcccccC
Confidence 67899999999999999982221 1223444444556654432 22111
Q ss_pred -------CHHH----HH---hcCC-CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCC
Q 020636 113 -------SVEE----VA---STGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP 177 (323)
Q Consensus 113 -------~~ee----i~---~~~~-~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~ 177 (323)
.++. +. ...+ .+...|++...+++...+.++++++.|++++.+|+.||....+
T Consensus 75 ~e~~s~~~~~~~~~~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~------------ 142 (299)
T cd02940 75 IELISEKPLEYWLKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPE------------ 142 (299)
T ss_pred CccccccCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCC------------
Confidence 0222 22 1122 5678999754488888889999988999999999999973100
Q ss_pred ccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCH----HHHHHHHHcCCCEEEEc
Q 020636 178 FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVS 253 (323)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~----e~a~~~~~~Gad~i~vs 253 (323)
+ +.+..+ ..+|+...+.++++++.+++||++|..... +.++.+.++|+|+|+++
T Consensus 143 ----~------------~~G~~l------~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~ 200 (299)
T cd02940 143 ----R------------GMGAAV------GQDPELVEEICRWVREAVKIPVIAKLTPNITDIREIARAAKEGGADGVSAI 200 (299)
T ss_pred ----C------------CCchhh------ccCHHHHHHHHHHHHHhcCCCeEEECCCCchhHHHHHHHHHHcCCCEEEEe
Confidence 0 000000 125566677899999988999999976433 66888999999999988
Q ss_pred CCCCC---------------------CCCCC----cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEE
Q 020636 254 NHGAR---------------------QLDYV----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFV 308 (323)
Q Consensus 254 ~~gg~---------------------~~~~~----~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~i 308 (323)
|+... +...+ +.+++.+.++++.+.+++|||++|||++++|+.+++.+|||+||+
T Consensus 201 Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i 280 (299)
T cd02940 201 NTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQV 280 (299)
T ss_pred cccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheE
Confidence 75421 01112 234788999998886579999999999999999999999999999
Q ss_pred cccccc
Q 020636 309 SIMPCQ 314 (323)
Q Consensus 309 G~~~~~ 314 (323)
||+++.
T Consensus 281 ~ta~~~ 286 (299)
T cd02940 281 CTAVMN 286 (299)
T ss_pred ceeecc
Confidence 999876
No 30
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.86 E-value=1.4e-20 Score=175.01 Aligned_cols=217 Identities=18% Similarity=0.140 Sum_probs=158.1
Q ss_pred hhcccccccccc--cCCCCCccceeec-----CcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCH
Q 020636 42 AFSRILFRPRIL--IDVSKIDMNTTVL-----GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSV 114 (323)
Q Consensus 42 ~~~~i~l~pr~l--~~~~~~d~~t~i~-----g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~ 114 (323)
.|+++.|+|+.. ...+++|++.+|. ...+..||+-|+|-.. ++..+|++.+++|...+++-+ .++
T Consensus 10 ~f~DVll~P~~s~v~sRsevdl~~~~~~~~~~~~~~giPii~AnMdTV------~~~~mA~~la~~g~~~~iHk~--~~~ 81 (346)
T PRK05096 10 GFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQSWSGVPIIAANMDTV------GTFEMAKALASFDILTAVHKH--YSV 81 (346)
T ss_pred CceeEEEecCcCccccHHHceecceeeeecccccccCCceEecCCCcc------ccHHHHHHHHHCCCeEEEecC--CCH
Confidence 699999999754 4456899988775 4557899999998543 677999999999999999963 355
Q ss_pred HHHHh----cCC---CceeEEeeecCChHHHHHHHHHHHH--cCCcEEEEecCCCCCCchHHHHhhccCCCCcccccccc
Q 020636 115 EEVAS----TGP---GIRFFQLYVYKDRNVVAQLVRRAER--AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQ 185 (323)
Q Consensus 115 eei~~----~~~---~~~~~QLy~~~d~~~~~~~~~~a~~--~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~ 185 (323)
|+..+ ..+ ....+ -..-.++. .+.++.+.+ +|++.|+| |+.+
T Consensus 82 e~~~~fv~~~~~~~~~~~~v--avG~~~~d-~er~~~L~~~~~g~D~ivi--D~Ah------------------------ 132 (346)
T PRK05096 82 EEWAAFVNNSSADVLKHVMV--STGTSDAD-FEKTKQILALSPALNFICI--DVAN------------------------ 132 (346)
T ss_pred HHHHHHHHhccccccceEEE--EecCCHHH-HHHHHHHHhcCCCCCEEEE--ECCC------------------------
Confidence 65332 221 11111 22223332 233444444 57887764 4433
Q ss_pred ccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhc-CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCC----
Q 020636 186 GLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL---- 260 (323)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~---- 260 (323)
++.....+.|+++|+.+ +.+|+...+.|.|-++.++++|||+|.|.-..|.-.
T Consensus 133 ----------------------Ghs~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~ 190 (346)
T PRK05096 133 ----------------------GYSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRV 190 (346)
T ss_pred ----------------------CcHHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEcccCCccccCcc
Confidence 11223467899999998 588899999999999999999999999865444321
Q ss_pred --CCCcchHHHHHHHHHHhcC-CCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 261 --DYVPATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 261 --~~~~~~~~~l~~i~~~~~~-~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
--+.|.+.++.++.++... .+|||+||||++..|++|||++|||+||+|++|.++.+
T Consensus 191 vtGvG~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI~KAlaaGAd~VMlGsllAGt~E 250 (346)
T PRK05096 191 KTGVGYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAGHEE 250 (346)
T ss_pred ccccChhHHHHHHHHHHHHHHcCCCEEecCCcccccHHHHHHHcCCCEEEeChhhcCccc
Confidence 1245678888888776532 68999999999999999999999999999999999764
No 31
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.86 E-value=1.2e-20 Score=177.97 Aligned_cols=204 Identities=18% Similarity=0.211 Sum_probs=153.9
Q ss_pred ceEECcccccccCCcHHHHHHHHHHHHcCC-ceeecCCCCC------CHHHHHhcCC--CceeEEeeecCChHHHHHHHH
Q 020636 73 PIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSWSTS------SVEEVASTGP--GIRFFQLYVYKDRNVVAQLVR 143 (323)
Q Consensus 73 Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~-~~~vs~~s~~------~~eei~~~~~--~~~~~QLy~~~d~~~~~~~~~ 143 (323)
||++|||++. +|.++++.|+++|. ..++++|.+. ...++....+ .+..+||+ ..|++.+.+.++
T Consensus 2 ~~~lAPM~g~------Td~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~~~l~~~~~e~p~~vQl~-g~~p~~~~~aA~ 74 (318)
T TIGR00742 2 RFSVAPMLDW------TDRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKKDILKFSPEESPVALQLG-GSDPNDLAKCAK 74 (318)
T ss_pred CEEEECCCCC------cCHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHHHHcccCCCCCcEEEEEc-cCCHHHHHHHHH
Confidence 7999999885 57799999999998 7888887431 1222322222 67999998 579999999999
Q ss_pred HHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHh
Q 020636 144 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTI 223 (323)
Q Consensus 144 ~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~ 223 (323)
.+++.|++.|.||++||+.- +. +.+.|+++ ..+|++..+.++.+++.
T Consensus 75 ~~~~~g~d~IDlN~GCP~~~---------------v~------------~~g~Gs~L------l~~p~~~~~iv~av~~~ 121 (318)
T TIGR00742 75 IAEKRGYDEINLNVGCPSDR---------------VQ------------NGNFGACL------MGNADLVADCVKAMQEA 121 (318)
T ss_pred HHHhCCCCEEEEECCCCHHH---------------hC------------CCCeehHh------hcCHHHHHHHHHHHHHH
Confidence 99999999999999999731 00 01112222 13677778899999999
Q ss_pred cCCCEEEeccC------C----HHHHHHHHHcCCCEEEEcCCCC-CCCC-------CCcchHHHHHHHHHHhcCCCeEEE
Q 020636 224 TKLPILVKGVL------T----AEDARIAVQAGAAGIIVSNHGA-RQLD-------YVPATIMALEEVVKATQGRIPVFL 285 (323)
Q Consensus 224 ~~~pv~vK~i~------~----~e~a~~~~~~Gad~i~vs~~gg-~~~~-------~~~~~~~~l~~i~~~~~~~~pvia 285 (323)
++.||.+|... + .+-++.+.++|+|.|.|+++.. .+.. ..+..++.+.++++.++ ++|||+
T Consensus 122 ~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~-~ipVi~ 200 (318)
T TIGR00742 122 VNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFP-HLTIEI 200 (318)
T ss_pred hCCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCC-CCcEEE
Confidence 99999999642 1 1237888899999999955421 1111 12335777888887764 699999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEccccccCcch
Q 020636 286 DGGVRRGTDVFKALALGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 286 ~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~ 318 (323)
+|||+|.+|+.+++. |||+|||||+++++||.
T Consensus 201 NGdI~s~~da~~~l~-g~dgVMigRgal~nP~i 232 (318)
T TIGR00742 201 NGGIKNSEQIKQHLS-HVDGVMVGREAYENPYL 232 (318)
T ss_pred ECCcCCHHHHHHHHh-CCCEEEECHHHHhCCHH
Confidence 999999999999996 99999999999999985
No 32
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=99.85 E-value=4.1e-20 Score=173.45 Aligned_cols=212 Identities=23% Similarity=0.286 Sum_probs=151.3
Q ss_pred cceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecC-C--------------------------CCCC
Q 020636 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSS-W--------------------------STSS 113 (323)
Q Consensus 61 ~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~-~--------------------------s~~~ 113 (323)
++|+|+|.++++||++||...+ . ++ ...+.+.+.|..+++.. . .+..
T Consensus 1 l~~~~~g~~l~npi~~aag~~~---~--~~-~~~~~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g 74 (300)
T TIGR01037 1 LEVELFGIRFKNPLILASGIMG---S--GV-ESLRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPG 74 (300)
T ss_pred CcEEECCEECCCCCEeCCcCCC---C--CH-HHHHHHHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcC
Confidence 4789999999999999994221 1 22 23444555688877661 1 1112
Q ss_pred HHH----HHhc---CCCceeEEeeecCChHHHHHHHHHHHHcC--CcEEEEecCCCCCCchHHHHhhccCCCCccccccc
Q 020636 114 VEE----VAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAG--FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 184 (323)
Q Consensus 114 ~ee----i~~~---~~~~~~~QLy~~~d~~~~~~~~~~a~~~G--~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~ 184 (323)
.+. +... .+.+.++||+ ..+++.+.+.++.+++++ ++++.+|+.||.... .
T Consensus 75 ~~~~~~~~~~~~~~~~~pl~~qi~-g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~--------~----------- 134 (300)
T TIGR01037 75 VEAFLEELKPVREEFPTPLIASVY-GSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKG--------G----------- 134 (300)
T ss_pred HHHHHHHHHHHhccCCCcEEEEee-cCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCC--------C-----------
Confidence 322 2221 1247899997 467888888888888763 899999999997410 0
Q ss_pred cccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCH----HHHHHHHHcCCCEEEEcCCC-CCC
Q 020636 185 QGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNHG-ARQ 259 (323)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~----e~a~~~~~~Gad~i~vs~~g-g~~ 259 (323)
+.. + ..++++..+.++++|+.++.||.+|...+. +.++.+.++|+|+|+++|+- ++.
T Consensus 135 ------------g~~---l---~~~~~~~~eiv~~vr~~~~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~ 196 (300)
T TIGR01037 135 ------------GIA---I---GQDPELSADVVKAVKDKTDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLRGMK 196 (300)
T ss_pred ------------ccc---c---ccCHHHHHHHHHHHHHhcCCCEEEECCCChhhHHHHHHHHHHcCCCEEEEEccCCccc
Confidence 000 0 125566788999999999999999987543 44778899999999998742 211
Q ss_pred CC------------C---Ccc----hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcch
Q 020636 260 LD------------Y---VPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 260 ~~------------~---~~~----~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~ 318 (323)
.+ + +++ .++.+.++++.+ ++|||++|||++++|+.+++.+|||+|++||+++..|++
T Consensus 197 ~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~--~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~ 272 (300)
T TIGR01037 197 IDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMV--DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFA 272 (300)
T ss_pred cccccCceeeCCCCccccchhhhHHHHHHHHHHHhcC--CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchH
Confidence 10 1 111 346777888777 799999999999999999999999999999999999865
No 33
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=99.84 E-value=1.8e-19 Score=169.27 Aligned_cols=213 Identities=23% Similarity=0.266 Sum_probs=155.5
Q ss_pred ccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceee-cCCCC--------------------------C
Q 020636 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWST--------------------------S 112 (323)
Q Consensus 60 d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~v-s~~s~--------------------------~ 112 (323)
|++|+++|.+|++||++|+-... .+..+++.+.+.|..+++ .|.+. .
T Consensus 1 ~l~~~~~G~~~~nPv~~aag~~~------~~~~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~ 74 (301)
T PRK07259 1 RLSVELPGLKLKNPVMPASGTFG------FGGEYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNP 74 (301)
T ss_pred CCceEECCEECCCCcEECCcCCC------CCHHHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCc
Confidence 67899999999999999972121 122567777788877664 34321 1
Q ss_pred CH----HHHHhc---CCCceeEEeeecCChHHHHHHHHHHHHcC-CcEEEEecCCCCCCchHHHHhhccCCCCccccccc
Q 020636 113 SV----EEVAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 184 (323)
Q Consensus 113 ~~----eei~~~---~~~~~~~QLy~~~d~~~~~~~~~~a~~~G-~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~ 184 (323)
.+ +++.+. ...+..+|+. ..+.+...+.+++++++| ++++.||+.||..... +..
T Consensus 75 g~~~~~~~~~~~~~~~~~p~i~si~-g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~g------g~~---------- 137 (301)
T PRK07259 75 GVDAFIEEELPWLEEFDTPIIANVA-GSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHG------GMA---------- 137 (301)
T ss_pred CHHHHHHHHHHHHhccCCcEEEEec-cCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCC------ccc----------
Confidence 12 223221 1356889996 457888888999999999 9999999999973100 000
Q ss_pred cccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCH----HHHHHHHHcCCCEEEEcCCC-CCC
Q 020636 185 QGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNHG-ARQ 259 (323)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~----e~a~~~~~~Gad~i~vs~~g-g~~ 259 (323)
+ ..++++.++.++++|+.++.||++|...+. +.++.+.++|+|+|+++|.. +..
T Consensus 138 ------------------~---~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~ 196 (301)
T PRK07259 138 ------------------F---GTDPELAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINTLKGMA 196 (301)
T ss_pred ------------------c---ccCHHHHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEccccccc
Confidence 0 124567788999999999999999987544 34788899999999987632 110
Q ss_pred ----------------CCC---CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcch
Q 020636 260 ----------------LDY---VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 260 ----------------~~~---~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~ 318 (323)
+.+ .+..++.+.++++.+ ++|||++|||++++|+.+++++|||+|++||+++..|++
T Consensus 197 ~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~--~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~ 272 (301)
T PRK07259 197 IDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAV--DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYA 272 (301)
T ss_pred cccccCceeecCCcCccCCcCcccccHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHH
Confidence 000 122567888888887 799999999999999999999999999999999987764
No 34
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=99.84 E-value=1e-19 Score=172.98 Aligned_cols=210 Identities=16% Similarity=0.146 Sum_probs=156.3
Q ss_pred cccccceEECcccccccCCcHHHHHHHHHHHHcCC-ceeecCCCCC------CHHHHHhcC--CCceeEEeeecCChHHH
Q 020636 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSWSTS------SVEEVASTG--PGIRFFQLYVYKDRNVV 138 (323)
Q Consensus 68 ~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~-~~~vs~~s~~------~~eei~~~~--~~~~~~QLy~~~d~~~~ 138 (323)
.....|+++|||++. +|.++++.|+++|. ..++++|.+. ...+..... +.+..+||+ ..|++.+
T Consensus 7 ~~~~~~~~lAPM~g~------td~~fR~~~~~~g~~~~~~temv~~~~l~~~~~~~~l~~~~~e~p~~vQl~-g~~p~~~ 79 (333)
T PRK11815 7 KLPSRRFSVAPMMDW------TDRHCRYFHRLLSRHALLYTEMVTTGAIIHGDRERLLAFDPEEHPVALQLG-GSDPADL 79 (333)
T ss_pred cCCCCCEEEeCCCCC------cCHHHHHHHHHhCCCCEEEECCEEeccccccCHHHHhccCCCCCcEEEEEe-CCCHHHH
Confidence 345679999999885 57799999999997 7888887321 122222222 268999998 5789999
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHH
Q 020636 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (323)
Q Consensus 139 ~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 218 (323)
.+.+++++++|++.|.||++||..-.| +.+.|+.+ ..+|++..+.++
T Consensus 80 ~~aA~~~~~~g~d~IdlN~gCP~~~v~---------------------------~~~~Gs~L------~~~p~~~~eiv~ 126 (333)
T PRK11815 80 AEAAKLAEDWGYDEINLNVGCPSDRVQ---------------------------NGRFGACL------MAEPELVADCVK 126 (333)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCHHHcc---------------------------CCCeeeHH------hcCHHHHHHHHH
Confidence 999999999999999999999973111 00112221 236778888999
Q ss_pred HHHHhcCCCEEEecc---C---C----HHHHHHHHHcCCCEEEEcCCCC-CCC-------CCCcchHHHHHHHHHHhcCC
Q 020636 219 WLQTITKLPILVKGV---L---T----AEDARIAVQAGAAGIIVSNHGA-RQL-------DYVPATIMALEEVVKATQGR 280 (323)
Q Consensus 219 ~i~~~~~~pv~vK~i---~---~----~e~a~~~~~~Gad~i~vs~~gg-~~~-------~~~~~~~~~l~~i~~~~~~~ 280 (323)
.+++.++.||.+|.. . + .+-++.+.++|+|.|.+++..+ .+. ...+..++.+.++++.+. +
T Consensus 127 avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~-~ 205 (333)
T PRK11815 127 AMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFP-H 205 (333)
T ss_pred HHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCC-C
Confidence 999999999999952 1 1 2336788899999999975322 111 112345788888887643 6
Q ss_pred CeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcchh
Q 020636 281 IPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 281 ~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~~ 319 (323)
+|||++|||+|.+|+.++++ |||+|||||+++.+|++=
T Consensus 206 iPVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~nP~~~ 243 (333)
T PRK11815 206 LTIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYHNPYLL 243 (333)
T ss_pred CeEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHhCCHHH
Confidence 99999999999999999997 799999999999999863
No 35
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=99.84 E-value=2.9e-20 Score=175.09 Aligned_cols=202 Identities=25% Similarity=0.265 Sum_probs=137.4
Q ss_pred EECcccccccCCcHHHHHHHHHHHHcCCc-eeecCCCCC------C--HHHHHhcCC--CceeEEeeecCChHHHHHHHH
Q 020636 75 MIAPTAMQKMAHPEGEYATARAASAAGTI-MTLSSWSTS------S--VEEVASTGP--GIRFFQLYVYKDRNVVAQLVR 143 (323)
Q Consensus 75 ~iaPm~~~~l~~~~~e~~~a~aa~~~G~~-~~vs~~s~~------~--~eei~~~~~--~~~~~QLy~~~d~~~~~~~~~ 143 (323)
++|||.+. ++.+++..+.++|.. .++++|.+. + ..+.....+ .+..+||. ..|++.+.+.++
T Consensus 1 ~LAPM~g~------td~~fR~l~~~~g~~~~~~temi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~-g~~~~~~~~aa~ 73 (309)
T PF01207_consen 1 ILAPMAGV------TDLPFRRLCREFGADDLTYTEMISAKAILRSNKKTIRLLPFLPNERPLIVQLF-GNDPEDLAEAAE 73 (309)
T ss_dssp -E---TTT------SSHHHHHHHHCCTSSSBEE-S-EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE--S-HHHHHHHHH
T ss_pred CccCCCCC------chHHHHHHHHHHCCCeEEEcCCEEECcccccccceeecccccccccceeEEEe-eccHHHHHHHHH
Confidence 58999875 567999999999999 889987431 0 111111122 57999998 589999888888
Q ss_pred HHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHh
Q 020636 144 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTI 223 (323)
Q Consensus 144 ~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~ 223 (323)
.+.+.|++.|+||++||.. .-.+ .+.|+++. .+|+...+.++.+++.
T Consensus 74 ~~~~~~~~~IDlN~GCP~~----~v~~-----------------------~g~Ga~Ll------~~p~~~~~iv~~~~~~ 120 (309)
T PF01207_consen 74 IVAELGFDGIDLNMGCPAP----KVTK-----------------------GGAGAALL------KDPDLLAEIVKAVRKA 120 (309)
T ss_dssp HHCCTT-SEEEEEE---SH----HHHH-----------------------CT-GGGGG------C-HHHHHHHHHHHHHH
T ss_pred hhhccCCcEEeccCCCCHH----HHhc-----------------------CCcChhhh------cChHHhhHHHHhhhcc
Confidence 8888899999999999983 1111 12233332 3677777889999999
Q ss_pred cCCCEEEecc---C-----CHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHH
Q 020636 224 TKLPILVKGV---L-----TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 295 (323)
Q Consensus 224 ~~~pv~vK~i---~-----~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di 295 (323)
+++||.+|.. . +.+-++.+.++|++.|.|+++...+...+++.++.+.++++.+ ++|||++|||.|.+|+
T Consensus 121 ~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~--~ipvi~NGdI~s~~d~ 198 (309)
T PF01207_consen 121 VPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEAL--PIPVIANGDIFSPEDA 198 (309)
T ss_dssp -SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC---TSEEEEESS--SHHHH
T ss_pred cccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcc--cceeEEcCccCCHHHH
Confidence 9999999953 2 2455889999999999998777667777789999999999998 6999999999999999
Q ss_pred HHHHHc-CCCEEEEccccccCcch
Q 020636 296 FKALAL-GASGIFVSIMPCQCPLT 318 (323)
Q Consensus 296 ~kal~l-GAd~V~iG~~~~~~~~~ 318 (323)
.+.+.. |||+|||||.++++||.
T Consensus 199 ~~~~~~tg~dgvMigRgal~nP~l 222 (309)
T PF01207_consen 199 ERMLEQTGADGVMIGRGALGNPWL 222 (309)
T ss_dssp HHHCCCH-SSEEEESHHHCC-CCH
T ss_pred HHHHHhcCCcEEEEchhhhhcCHH
Confidence 999985 99999999999999985
No 36
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=99.82 E-value=2.1e-18 Score=167.21 Aligned_cols=230 Identities=23% Similarity=0.232 Sum_probs=146.3
Q ss_pred CccceeecC-----cccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEEeeecC
Q 020636 59 IDMNTTVLG-----FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYK 133 (323)
Q Consensus 59 ~d~~t~i~g-----~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QLy~~~ 133 (323)
++.++++.+ ..++.||+++||+++.+ ..+...+++.+++++|...++++.. .+.+++.... ....|+- ..
T Consensus 60 ~~~~~~~g~~~~~~~~i~~Pi~~~~Ms~Gs~-s~~a~~aLa~aa~~aG~~~~~Gegg-~~~~~~~~~~--~~i~q~~-~~ 134 (392)
T cd02808 60 VDDRVTIGPNAEKPLKLDSPFNISAMSFGAL-SKEAKEALAIGAALAGTASNTGEGG-ELPEEREGGG--DIIKQVA-SG 134 (392)
T ss_pred cccceeeccccCCccccccceEecCCCCCcc-cHHHHHHHHHHHHhcCCceeecCCC-CCHHHHhhhh--heEEEec-CC
Confidence 344665554 35689999999998754 4456779999999999999999854 5566665332 2345541 11
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCC-CchHHHHhhccCCCC-cccc--ccccccccCCCccccchhhHHHHhhccC
Q 020636 134 DRNVVAQLVRRAERAGFKAIALTVDTPRL-GRREADIKNRFTLPP-FLTL--KNFQGLDLGKMDEANDSGLAAYVAGQID 209 (323)
Q Consensus 134 d~~~~~~~~~~a~~~G~~al~itvd~p~~-g~r~~d~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (323)
.-......++. ++.+-+.+.--.. | .+-.+|. |++. ......+.+ .+.+++..+
T Consensus 135 ~fGv~~~~~~~-----~~~ieik~~QGAkpg-------~gg~l~~~Kv~~eiA~~r~~~~g----------~~~isp~~~ 192 (392)
T cd02808 135 RFGVRPEYLNK-----ADAIEIKIGQGAKPG-------EGGHLPGEKVTEEIAKIRGIPPG----------VDLISPPPH 192 (392)
T ss_pred CCccCHHHccc-----CcEEEEEeccCCCCC-------CCCccccccCCHHHHHHhCCCCC----------ccccCCCCC
Confidence 11111112211 4455554431110 0 0000110 1110 000001000 012233344
Q ss_pred CccC-----HHHHHHHHHhcC-CCEEEeccC--CHHHHHHHHHcC-CCEEEEcCCCCCC--------CCCCcchHHHHHH
Q 020636 210 RSLS-----WKDVKWLQTITK-LPILVKGVL--TAEDARIAVQAG-AAGIIVSNHGARQ--------LDYVPATIMALEE 272 (323)
Q Consensus 210 ~~~~-----~~~i~~i~~~~~-~pv~vK~i~--~~e~a~~~~~~G-ad~i~vs~~gg~~--------~~~~~~~~~~l~~ 272 (323)
+++. .+.|+++|+.++ .||++|++. +.+++..+.+.| +|+|+|+|++|.. .+.+.|+...|++
T Consensus 193 ~~~~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~ 272 (392)
T cd02808 193 HDIYSIEDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLAR 272 (392)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHH
Confidence 4543 567999999998 999999885 477766666655 9999999996543 2346788888998
Q ss_pred HHHHh-----cCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 273 VVKAT-----QGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 273 i~~~~-----~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
+.+.+ +.++|||++|||+++.|++|+|++|||+|.+||+|+..
T Consensus 273 v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~a 320 (392)
T cd02808 273 AHQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALIA 320 (392)
T ss_pred HHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHHHh
Confidence 88765 24699999999999999999999999999999999854
No 37
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.81 E-value=2.3e-18 Score=161.28 Aligned_cols=211 Identities=23% Similarity=0.265 Sum_probs=149.8
Q ss_pred ceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeec-CCCCC--------------------------C-
Q 020636 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTS--------------------------S- 113 (323)
Q Consensus 62 ~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~s~~--------------------------~- 113 (323)
+|+++|.+|++||++|+ |.. . ....+.+.+...|..+++. +.+.. .
T Consensus 1 ~~~~~G~~~~nP~~~aa-g~~----~-~~~~~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~ 74 (296)
T cd04740 1 SVELAGLRLKNPVILAS-GTF----G-FGEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGV 74 (296)
T ss_pred CeEECCEEcCCCCEECC-CCC----C-CHHHHHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCH
Confidence 57899999999999994 221 1 2224555555444666644 33211 1
Q ss_pred ---HHHHHhc---CCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCcccccccccc
Q 020636 114 ---VEEVAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL 187 (323)
Q Consensus 114 ---~eei~~~---~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~ 187 (323)
++++.+. ...+..+||.. .+.+...+.+++++++|++++.||+.||....| +
T Consensus 75 ~~~~~~~~~~~~~~~~p~ivsi~g-~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~--------------------g- 132 (296)
T cd04740 75 EAFLEELLPWLREFGTPVIASIAG-STVEEFVEVAEKLADAGADAIELNISCPNVKGG--------------------G- 132 (296)
T ss_pred HHHHHHHHHHhhcCCCcEEEEEec-CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCC--------------------c-
Confidence 1223222 23578999974 577888889999999999999999999973111 0
Q ss_pred ccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCC----HHHHHHHHHcCCCEEEEcCCC-CCCCC-
Q 020636 188 DLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLT----AEDARIAVQAGAAGIIVSNHG-ARQLD- 261 (323)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~----~e~a~~~~~~Gad~i~vs~~g-g~~~~- 261 (323)
.. + ..++++..+.++++++.++.||.+|...+ .+.++.+.++|+|+|+++|+. +...+
T Consensus 133 ----------~~---~---~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~ 196 (296)
T cd04740 133 ----------MA---F---GTDPEAVAEIVKAVKKATDVPVIVKLTPNVTDIVEIARAAEEAGADGLTLINTLKGMAIDI 196 (296)
T ss_pred ----------cc---c---cCCHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHHHHcCCCEEEEECCCccccccc
Confidence 00 0 12455667889999999899999996533 244788999999999998742 11110
Q ss_pred -----------C---C----cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcch
Q 020636 262 -----------Y---V----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 262 -----------~---~----~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~ 318 (323)
+ + +..++.+.++++.+ ++|||++|||.+++|+.++|++|||+|++||+++..|++
T Consensus 197 ~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~--~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~ 269 (296)
T cd04740 197 ETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAV--EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEA 269 (296)
T ss_pred ccCceeecCCcceecCcccchHHHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHH
Confidence 1 1 12457888888877 799999999999999999999999999999999998875
No 38
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=99.81 E-value=4.9e-18 Score=161.04 Aligned_cols=209 Identities=19% Similarity=0.200 Sum_probs=142.7
Q ss_pred ccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeec-CCCCC--------------------------
Q 020636 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTS-------------------------- 112 (323)
Q Consensus 60 d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~s~~-------------------------- 112 (323)
|++|+++|.+|++||++|.-+.+ ......+.+..+|.++++. |.+..
T Consensus 1 dL~v~~~Gl~l~nPv~~ASg~~~------~~~e~~~~~~~~G~Gavv~ktit~~~~~~~gn~~pr~~~~~~~~~~~~~~i 74 (325)
T cd04739 1 DLSTTYLGLSLKNPLVASASPLS------RNLDNIRRLEDAGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSYF 74 (325)
T ss_pred CceEEECCEecCCCCEeCCcCCC------CCHHHHHHHHHCCCcEEEecccchhhhhhcCCCCCceEeecccCcCccccc
Confidence 67899999999999999853332 1223444477777666543 32110
Q ss_pred --------C----HHHHHhc---CCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCC
Q 020636 113 --------S----VEEVAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP 177 (323)
Q Consensus 113 --------~----~eei~~~---~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~ 177 (323)
. ++++.+. .+.+.++|+.. .+.+...+.+++++++|++++.+|+.||... |
T Consensus 75 n~~g~~n~g~~~~~~~i~~~~~~~~~pvi~si~g-~~~~~~~~~a~~~~~~gad~iElN~s~~~~~------------~- 140 (325)
T cd04739 75 PEYGRYNLGPEEYLELIRRAKRAVSIPVIASLNG-VSAGGWVDYARQIEEAGADALELNIYALPTD------------P- 140 (325)
T ss_pred ccccccCcCHHHHHHHHHHHHhccCCeEEEEeCC-CCHHHHHHHHHHHHhcCCCEEEEeCCCCCCC------------C-
Confidence 1 1223221 13467888853 5667777888888888999999998874310 0
Q ss_pred ccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCC----HHHHHHHHHcCCCEEEEc
Q 020636 178 FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLT----AEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~----~e~a~~~~~~Gad~i~vs 253 (323)
+. .+.. .++...+.++++++.+++||++|.... .+.++.+.++|+|+|+++
T Consensus 141 ~~----------------~g~~---------~~~~~~eiv~~v~~~~~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~ 195 (325)
T cd04739 141 DI----------------SGAE---------VEQRYLDILRAVKSAVTIPVAVKLSPFFSALAHMAKQLDAAGADGLVLF 195 (325)
T ss_pred Cc----------------ccch---------HHHHHHHHHHHHHhccCCCEEEEcCCCccCHHHHHHHHHHcCCCeEEEE
Confidence 00 0000 012345779999999999999997633 456888999999999999
Q ss_pred CCCCC-CCC---------C---C----cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 254 NHGAR-QLD---------Y---V----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 254 ~~gg~-~~~---------~---~----~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
|+... ..| + + +-+++.+.++.+.+ ++|||++|||+|++|+.++|.+||++|++||+++..
T Consensus 196 nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~--~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~ 272 (325)
T cd04739 196 NRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRV--KASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRH 272 (325)
T ss_pred cCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHccc--CCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhhc
Confidence 97521 111 1 1 12356667776666 799999999999999999999999999999998773
No 39
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=99.80 E-value=1.3e-18 Score=156.79 Aligned_cols=205 Identities=20% Similarity=0.216 Sum_probs=152.3
Q ss_pred ceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCC-C-----HH--HHHhcC--CCceeEEeeecCChHHHHHHH
Q 020636 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS-S-----VE--EVASTG--PGIRFFQLYVYKDRNVVAQLV 142 (323)
Q Consensus 73 Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~-~-----~e--ei~~~~--~~~~~~QLy~~~d~~~~~~~~ 142 (323)
|+++|||-.. ++++++..+.++|.-.+.++|-.. + -. ...... +.+..+||. ..+++...+..
T Consensus 1 ~~~~aPm~~~------~~~~fR~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~-g~~~~~~~~aa 73 (231)
T cd02801 1 KLILAPMVGV------TDLPFRLLCRRYGADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLG-GSDPETLAEAA 73 (231)
T ss_pred CeEeCCCCCC------cCHHHHHHHHHHCCCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEc-CCCHHHHHHHH
Confidence 6899999764 678999999999988888876321 1 11 111111 267899997 46788888899
Q ss_pred HHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHH
Q 020636 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQT 222 (323)
Q Consensus 143 ~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 222 (323)
++++++|++++.|++.||..-.|. .+ .|..+ ..++.+..+.++.+++
T Consensus 74 ~~~~~aG~d~ieln~g~p~~~~~~----~~-----------------------~G~~l------~~~~~~~~eii~~v~~ 120 (231)
T cd02801 74 KIVEELGADGIDLNMGCPSPKVTK----GG-----------------------AGAAL------LKDPELVAEIVRAVRE 120 (231)
T ss_pred HHHHhcCCCEEEEeCCCCHHHHhC----CC-----------------------eeehh------cCCHHHHHHHHHHHHH
Confidence 999999999999999998631110 00 01111 1356667788999999
Q ss_pred hcCCCEEEeccCC-------HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHH
Q 020636 223 ITKLPILVKGVLT-------AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 295 (323)
Q Consensus 223 ~~~~pv~vK~i~~-------~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di 295 (323)
.++.|+.+|.... .+-++.+.+.|+|.|.+++....+....+..++.+..+++.+ ++||+++|||++.+|+
T Consensus 121 ~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~--~ipvi~~Ggi~~~~d~ 198 (231)
T cd02801 121 AVPIPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAV--SIPVIANGDIFSLEDA 198 (231)
T ss_pred hcCCCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCC--CCeEEEeCCCCCHHHH
Confidence 8888999995421 233677888999999996643322233456788888888866 7999999999999999
Q ss_pred HHHHHc-CCCEEEEccccccCcchh
Q 020636 296 FKALAL-GASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 296 ~kal~l-GAd~V~iG~~~~~~~~~~ 319 (323)
.+++.. |||+|++||+++.+|++=
T Consensus 199 ~~~l~~~gad~V~igr~~l~~P~~~ 223 (231)
T cd02801 199 LRCLEQTGVDGVMIGRGALGNPWLF 223 (231)
T ss_pred HHHHHhcCCCEEEEcHHhHhCCHHH
Confidence 999998 899999999999999764
No 40
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.80 E-value=1.9e-18 Score=172.06 Aligned_cols=107 Identities=22% Similarity=0.344 Sum_probs=89.2
Q ss_pred CCccCHHHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCC----CCCC-----CcchHHHHHHHHHHhc
Q 020636 209 DRSLSWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDY-----VPATIMALEEVVKATQ 278 (323)
Q Consensus 209 ~~~~~~~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~----~~~~-----~~~~~~~l~~i~~~~~ 278 (323)
+....|+.+++||+.++ .+|+++++.|.++|+.+.++|||+|.|++|.|. +... ..+++..++++.+..
T Consensus 272 ~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~- 350 (505)
T PLN02274 272 DSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQH- 350 (505)
T ss_pred CcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhc-
Confidence 33456899999999994 888889999999999999999999999987763 2211 123566677777665
Q ss_pred CCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 279 GRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 279 ~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
++|||++|||+++.|+.|||++||++||+|++|.++.+
T Consensus 351 -~vpVIadGGI~~~~di~kAla~GA~~V~vGs~~~~t~E 388 (505)
T PLN02274 351 -GVPVIADGGISNSGHIVKALTLGASTVMMGSFLAGTTE 388 (505)
T ss_pred -CCeEEEeCCCCCHHHHHHHHHcCCCEEEEchhhccccc
Confidence 79999999999999999999999999999999988653
No 41
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.80 E-value=2.7e-18 Score=170.66 Aligned_cols=105 Identities=28% Similarity=0.290 Sum_probs=91.1
Q ss_pred cCHHHHHHHHHhcCCCEEEe--ccCCHHHHHHHHHcCCCEEEEcCCCC-----C-CCCCCcchHHHHHHHHHHh------
Q 020636 212 LSWKDVKWLQTITKLPILVK--GVLTAEDARIAVQAGAAGIIVSNHGA-----R-QLDYVPATIMALEEVVKAT------ 277 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK--~i~~~e~a~~~~~~Gad~i~vs~~gg-----~-~~~~~~~~~~~l~~i~~~~------ 277 (323)
...+.|+++++.++.++.++ .+.+.++|+.+.++|||+|.|++|+| | +.+.++|.+..+.++.+++
T Consensus 269 ~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~ 348 (502)
T PRK07107 269 WQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEE 348 (502)
T ss_pred HHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhh
Confidence 34678999999997545444 48999999999999999999999999 4 5667788999999988865
Q ss_pred -cCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 278 -QGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 278 -~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
+.++|||+||||+++.|++|||++|||+||+|++|.++.
T Consensus 349 ~g~~~~viadgGir~~gdi~KAla~GA~~vm~G~~~ag~~ 388 (502)
T PRK07107 349 TGVYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFARFD 388 (502)
T ss_pred cCCcceEEEcCCCCchhHHHHHHHcCCCeeeeChhhhccc
Confidence 224999999999999999999999999999999999865
No 42
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.79 E-value=1.8e-17 Score=164.96 Aligned_cols=110 Identities=23% Similarity=0.314 Sum_probs=91.4
Q ss_pred cCCccCHHHHHHHHHhc-CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCC------CCCCCcchHHHHHHHHHHhc-C
Q 020636 208 IDRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR------QLDYVPATIMALEEVVKATQ-G 279 (323)
Q Consensus 208 ~~~~~~~~~i~~i~~~~-~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~------~~~~~~~~~~~l~~i~~~~~-~ 279 (323)
++....|+.|+++++.+ +.||+++.+.|.++++.+.++|||+|.++.+.|. ..+.+.|.+..+.++.+.+. .
T Consensus 264 G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~ 343 (495)
T PTZ00314 264 GNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARER 343 (495)
T ss_pred CCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhc
Confidence 34455688999999997 6899999999999999999999999999654331 12345677888777776653 2
Q ss_pred CCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 280 RIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 280 ~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
++|||++|||+++.|++||+++||++||+|++|.++.+
T Consensus 344 ~v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~~~e 381 (495)
T PTZ00314 344 GVPCIADGGIKNSGDICKALALGADCVMLGSLLAGTEE 381 (495)
T ss_pred CCeEEecCCCCCHHHHHHHHHcCCCEEEECchhccccc
Confidence 69999999999999999999999999999999988653
No 43
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=99.79 E-value=1.1e-17 Score=156.15 Aligned_cols=211 Identities=24% Similarity=0.265 Sum_probs=151.0
Q ss_pred eeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeec-CCCCC-----------------------------
Q 020636 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTS----------------------------- 112 (323)
Q Consensus 63 t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~s~~----------------------------- 112 (323)
|+++|.+|++||++|.-... .+....+.+.++|..+++. |.+..
T Consensus 1 ~~~~G~~~~nPv~~aag~~~------~~~~~~~~~~~~g~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~ 74 (289)
T cd02810 1 VNFLGLKLKNPFGVAAGPLL------KTGELIARAAAAGFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNS 74 (289)
T ss_pred CeECCEECCCCCEeCCCCCC------CCHHHHHHHHHcCCCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeec
Confidence 57899999999999984331 2345677777888766643 32210
Q ss_pred ------CH----HHHHhc----CCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCc
Q 020636 113 ------SV----EEVAST----GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPF 178 (323)
Q Consensus 113 ------~~----eei~~~----~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~ 178 (323)
.+ +++.+. ...+..+|+.. .+.+...+.++++++.|++++.+|+.||..... ++
T Consensus 75 ~g~~~~g~~~~~~~i~~~~~~~~~~pvi~si~g-~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~-~~---------- 142 (289)
T cd02810 75 FGLPNLGLDVWLQDIAKAKKEFPGQPLIASVGG-SSKEDYVELARKIERAGAKALELNLSCPNVGGG-RQ---------- 142 (289)
T ss_pred CCCCCcCHHHHHHHHHHHHhccCCCeEEEEecc-CCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCC-cc----------
Confidence 11 223221 13567889864 577788888999999999999999999973210 00
Q ss_pred cccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEecc--CC----HHHHHHHHHcCCCEEEE
Q 020636 179 LTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV--LT----AEDARIAVQAGAAGIIV 252 (323)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i--~~----~e~a~~~~~~Gad~i~v 252 (323)
...+++...+.++++++.++.||++|.. .+ .+.++.+.++|+|+|++
T Consensus 143 ---------------------------~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~ 195 (289)
T cd02810 143 ---------------------------LGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTA 195 (289)
T ss_pred ---------------------------cccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 0113445567899999988999999954 33 45578889999999999
Q ss_pred cCCCC-CC------------CCC---C----cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccc
Q 020636 253 SNHGA-RQ------------LDY---V----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 253 s~~gg-~~------------~~~---~----~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~ 312 (323)
+|+.. .. ..+ + +..++.+.++++.++.++|||++|||++++|+.+++++|||+|++||++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~ 275 (289)
T cd02810 196 INTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATAL 275 (289)
T ss_pred EcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHH
Confidence 87521 10 011 1 1246678888887754699999999999999999999999999999999
Q ss_pred ccC-cch
Q 020636 313 CQC-PLT 318 (323)
Q Consensus 313 ~~~-~~~ 318 (323)
+.. |++
T Consensus 276 ~~~GP~~ 282 (289)
T cd02810 276 MWDGPDV 282 (289)
T ss_pred HhcCccH
Confidence 987 754
No 44
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.78 E-value=1.6e-17 Score=164.02 Aligned_cols=108 Identities=28% Similarity=0.365 Sum_probs=91.3
Q ss_pred CccCHHHHHHHHHhc-CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCC-----C-CCCcchHHHHHHHHHHhc-CCC
Q 020636 210 RSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ-----L-DYVPATIMALEEVVKATQ-GRI 281 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~-~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~-----~-~~~~~~~~~l~~i~~~~~-~~~ 281 (323)
....++.|+++++.+ ++||+++.+.|.++|+.+.++|||+|.|+.+.|.. . ..+.|.+.++.++.+.+. .++
T Consensus 249 ~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~v 328 (450)
T TIGR01302 249 SIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGI 328 (450)
T ss_pred HhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCC
Confidence 344577899999986 79999999999999999999999999998655421 1 245678888888876652 379
Q ss_pred eEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 282 PVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 282 pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
|||++|||+++.|+.|||++||++||+|++|.++.+
T Consensus 329 pviadGGi~~~~di~kAla~GA~~V~~G~~~a~~~e 364 (450)
T TIGR01302 329 PVIADGGIRYSGDIVKALAAGADAVMLGSLLAGTTE 364 (450)
T ss_pred eEEEeCCCCCHHHHHHHHHcCCCEEEECchhhcCCc
Confidence 999999999999999999999999999999998764
No 45
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.78 E-value=1.2e-17 Score=156.22 Aligned_cols=214 Identities=17% Similarity=0.110 Sum_probs=144.6
Q ss_pred eeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeec-CCCC--------------------------CC--
Q 020636 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST--------------------------SS-- 113 (323)
Q Consensus 63 t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~s~--------------------------~~-- 113 (323)
++++|.+|++||++|+-.. +.+....+.+.+.|.++++. |.+. ..
T Consensus 1 ~~~~Gl~l~nPi~~Asg~~------~~~~e~~~~~~~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~g~~ 74 (294)
T cd04741 1 VTPPGLTISPPLMNAAGPW------CTTLEDLLELAASSTGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGLD 74 (294)
T ss_pred CccCCeeCCCCCEECCCCC------CCCHHHHHHHHHcCCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCcCHH
Confidence 5789999999999997321 23334566666678777643 4321 11
Q ss_pred --HHHHHhc------CCCceeEEeeecCChHHHHHHHHHHHHc---CCcEEEEecCCCCCCchHHHHhhccCCCCccccc
Q 020636 114 --VEEVAST------GPGIRFFQLYVYKDRNVVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182 (323)
Q Consensus 114 --~eei~~~------~~~~~~~QLy~~~d~~~~~~~~~~a~~~---G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~ 182 (323)
++++.+. ...+...|+... .+...+.++++++. |++++.+|+.||..... .
T Consensus 75 ~~~~~i~~~~~~~~~~~~pvivsi~g~--~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~-~--------------- 136 (294)
T cd04741 75 YYLEYIRTISDGLPGSAKPFFISVTGS--AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGK-P--------------- 136 (294)
T ss_pred HHHHHHHHHhhhccccCCeEEEECCCC--HHHHHHHHHHHHhhccccccEEEEECCCCCCCCc-c---------------
Confidence 2333322 135788998743 67777777777765 69999999999973100 0
Q ss_pred cccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccC--CH----HHHHHHHHc--CCCEEEEcC
Q 020636 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL--TA----EDARIAVQA--GAAGIIVSN 254 (323)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~--~~----e~a~~~~~~--Gad~i~vs~ 254 (323)
....+++...+.++++++.+++||++|... +. +.|+.+.+. |+|+|++.|
T Consensus 137 ----------------------~~~~~~~~~~~i~~~v~~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~N 194 (294)
T cd04741 137 ----------------------PPAYDFDATLEYLTAVKAAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATN 194 (294)
T ss_pred ----------------------cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEc
Confidence 001245556778999999999999999763 22 234555677 999999865
Q ss_pred CCC---------CC-------CCCCcc-------hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccc
Q 020636 255 HGA---------RQ-------LDYVPA-------TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIM 311 (323)
Q Consensus 255 ~gg---------~~-------~~~~~~-------~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~ 311 (323)
.-+ +. ..++.+ .+..+.++++.++.++|||++|||.|++|+++++.+|||+||+||.
T Consensus 195 t~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta 274 (294)
T cd04741 195 TLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTA 274 (294)
T ss_pred cCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchh
Confidence 431 11 112222 3456677777775469999999999999999999999999999999
Q ss_pred ccc-Cc-chhhhc
Q 020636 312 PCQ-CP-LTEKIN 322 (323)
Q Consensus 312 ~~~-~~-~~~~~~ 322 (323)
++. .| .+++|+
T Consensus 275 ~~~~gp~~~~~i~ 287 (294)
T cd04741 275 LGKEGPKVFARIE 287 (294)
T ss_pred hhhcCchHHHHHH
Confidence 884 44 455543
No 46
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.78 E-value=1.4e-17 Score=158.62 Aligned_cols=209 Identities=18% Similarity=0.185 Sum_probs=141.8
Q ss_pred ccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeec-CCC----------------------------
Q 020636 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWS---------------------------- 110 (323)
Q Consensus 60 d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~s---------------------------- 110 (323)
|++|+++|.+|++||++|.-... ..+| ..+.+.+.|.++++. |.+
T Consensus 2 ~l~~~~~Gl~l~nPv~~asg~~~----~~~~--~~~~~~~~g~Gavv~kti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (334)
T PRK07565 2 DLSTTYLGLTLRNPLVASASPLS----ESVD--NVKRLEDAGAGAVVLKSLFEEQIRHEAAELDRHLTHGTESFAEALDY 75 (334)
T ss_pred CceEEECCEecCCCCEecCcCCC----CCHH--HHHHHHHCCCeEEEEeeCCHHHhhccccccccccccCCCcchhhhhh
Confidence 68999999999999998874332 1122 333466777665543 221
Q ss_pred -------CCCHHH----HH---hcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCC
Q 020636 111 -------TSSVEE----VA---STGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP 176 (323)
Q Consensus 111 -------~~~~ee----i~---~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~ 176 (323)
+..+++ +. +..+.+.+.|+.. .+.+...+.+++++++|++++.+|+.||.... + +
T Consensus 76 ~n~~gl~n~g~d~~~~~i~~~~~~~~~pvi~sI~g-~~~~e~~~~a~~~~~agad~ielN~scpp~~~---~----~--- 144 (334)
T PRK07565 76 FPEPAKFYVGPEEYLELIRRAKEAVDIPVIASLNG-SSAGGWVDYARQIEQAGADALELNIYYLPTDP---D----I--- 144 (334)
T ss_pred hhhhhccCcCHHHHHHHHHHHHHhcCCcEEEEecc-CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCC---C----C---
Confidence 011222 21 1123567888864 56666677888888889999999988864200 0 0
Q ss_pred CccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCC----HHHHHHHHHcCCCEEEE
Q 020636 177 PFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLT----AEDARIAVQAGAAGIIV 252 (323)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~----~e~a~~~~~~Gad~i~v 252 (323)
.+.. .+...++.++++++.+++||++|.... .+.++.+.++|+|+|++
T Consensus 145 -------------------~g~~---------~~~~~~eil~~v~~~~~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~ 196 (334)
T PRK07565 145 -------------------SGAE---------VEQRYLDILRAVKSAVSIPVAVKLSPYFSNLANMAKRLDAAGADGLVL 196 (334)
T ss_pred -------------------cccc---------HHHHHHHHHHHHHhccCCcEEEEeCCCchhHHHHHHHHHHcCCCeEEE
Confidence 0000 011247889999999999999996532 35578889999999999
Q ss_pred cCCCCC-CCC---------C---C----cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 253 SNHGAR-QLD---------Y---V----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 253 s~~gg~-~~~---------~---~----~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
+|+... ..| + + +-.++.+.++.+.+ ++|||++|||+|++|+.++|.+||++|++||+++..
T Consensus 197 ~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~--~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~ 274 (334)
T PRK07565 197 FNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRV--GADLAATTGVHDAEDVIKMLLAGADVVMIASALLRH 274 (334)
T ss_pred ECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhc--CCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhhh
Confidence 887421 111 1 1 12345666666666 799999999999999999999999999999999874
No 47
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=99.78 E-value=2.2e-17 Score=156.73 Aligned_cols=244 Identities=18% Similarity=0.190 Sum_probs=159.5
Q ss_pred chHHHHHhHHhhcccccccccc-cCCCCCccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeec-CC
Q 020636 32 DQWTLQENRNAFSRILFRPRIL-IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SW 109 (323)
Q Consensus 32 ~e~t~~~N~~~~~~i~l~pr~l-~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~ 109 (323)
-|.+++-....+.-+...|-.+ +...+.|++|+++|.+|++||++|. |. ..++ ...+.+.++|.++++. |.
T Consensus 9 ~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Gl~l~nPi~~As-G~----~~~~--~~~~~~~~~G~Gavv~kti 81 (327)
T cd04738 9 PETAHRLAIRALKLGLGPPLLLLLVYDDPRLEVEVFGLTFPNPVGLAA-GF----DKNA--EAIDALLALGFGFVEVGTV 81 (327)
T ss_pred HHHHHHHHHHHHHhcCCCCCccccCCCCCCcceEECCEECCCCCEeCc-CC----CCCH--HHHHHHHHCCCcEEEEecc
Confidence 4566777777777776666332 4567889999999999999999976 32 2223 3445545788766643 43
Q ss_pred CCC----------------------------C----HHHHHhcC--CCceeEEeeecCC------hHHHHHHHHHHHHcC
Q 020636 110 STS----------------------------S----VEEVASTG--PGIRFFQLYVYKD------RNVVAQLVRRAERAG 149 (323)
Q Consensus 110 s~~----------------------------~----~eei~~~~--~~~~~~QLy~~~d------~~~~~~~~~~a~~~G 149 (323)
+.. . ++++.+.. ..+.++|+..... .+...++++++.. .
T Consensus 82 t~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~~~~l~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~-~ 160 (327)
T cd04738 82 TPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGP-Y 160 (327)
T ss_pred CCCCCCCCCCCCEEEccCccceeecCCCCCccHHHHHHHHHHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHh-h
Confidence 211 0 23333222 2567788754321 2333444444433 3
Q ss_pred CcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcC----
Q 020636 150 FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITK---- 225 (323)
Q Consensus 150 ~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~---- 225 (323)
++++.+|+.||.... . + ...+++...+.++++++.++
T Consensus 161 ad~ielN~scP~~~g--------~--------~-----------------------~~~~~~~~~~iv~av~~~~~~~~~ 201 (327)
T cd04738 161 ADYLVVNVSSPNTPG--------L--------R-----------------------DLQGKEALRELLTAVKEERNKLGK 201 (327)
T ss_pred CCEEEEECCCCCCCc--------c--------c-----------------------cccCHHHHHHHHHHHHHHHhhccc
Confidence 788888888886310 0 0 01134444567888988875
Q ss_pred -CCEEEeccC--C----HHHHHHHHHcCCCEEEEcCCCCCC-------------CCCC----cchHHHHHHHHHHhcCCC
Q 020636 226 -LPILVKGVL--T----AEDARIAVQAGAAGIIVSNHGARQ-------------LDYV----PATIMALEEVVKATQGRI 281 (323)
Q Consensus 226 -~pv~vK~i~--~----~e~a~~~~~~Gad~i~vs~~gg~~-------------~~~~----~~~~~~l~~i~~~~~~~~ 281 (323)
+||++|... + .+-++.+.++|+|+|+++|..... ...+ +.+++.+.++++.+++++
T Consensus 202 ~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~i 281 (327)
T cd04738 202 KVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKI 281 (327)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCC
Confidence 999999752 2 334678889999999998742100 0011 234678888888886679
Q ss_pred eEEEecCCCCHHHHHHHHHcCCCEEEEccccccC-cc-hhhhc
Q 020636 282 PVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC-PL-TEKIN 322 (323)
Q Consensus 282 pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~-~~-~~~~~ 322 (323)
|||++|||+|++|+.+++.+|||+|++||+++.. |+ +++|+
T Consensus 282 pIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~~gP~~~~~i~ 324 (327)
T cd04738 282 PIIGVGGISSGEDAYEKIRAGASLVQLYTGLVYEGPGLVKRIK 324 (327)
T ss_pred cEEEECCCCCHHHHHHHHHcCCCHHhccHHHHhhCcHHHHHHH
Confidence 9999999999999999999999999999999753 54 44444
No 48
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.77 E-value=2.7e-17 Score=157.10 Aligned_cols=241 Identities=17% Similarity=0.162 Sum_probs=152.4
Q ss_pred hHHHHHhHHhhcccc---ccc---ccccCCCCCccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceee
Q 020636 33 QWTLQENRNAFSRIL---FRP---RILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL 106 (323)
Q Consensus 33 e~t~~~N~~~~~~i~---l~p---r~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~v 106 (323)
|.+++--..++..+. +.+ +.+ ...+.+++|+++|.+|++||++|. |.. .++ ...+.+.++|.++++
T Consensus 16 e~~h~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~~~~Gl~l~nPi~~As-G~~----~~~--~~~~~~~~~G~Gavv 87 (344)
T PRK05286 16 ETAHELTIRALKRASRTPLLSLLRQRL-TYTDPRLPVTVMGLTFPNPVGLAA-GFD----KNG--EAIDALGALGFGFVE 87 (344)
T ss_pred HHHHHHHHHHHHHhccCCchhhhhhcc-CCCCCCCceEECCEECCCCCEECC-CCC----CCh--HHHHHHHHcCCCEEE
Confidence 455554455555444 221 212 345778999999999999999976 322 223 456668888887764
Q ss_pred c-CCCCC----------------------------C----HHHHHhc-CCCceeEEeeecC------ChHHHHHHHHHHH
Q 020636 107 S-SWSTS----------------------------S----VEEVAST-GPGIRFFQLYVYK------DRNVVAQLVRRAE 146 (323)
Q Consensus 107 s-~~s~~----------------------------~----~eei~~~-~~~~~~~QLy~~~------d~~~~~~~~~~a~ 146 (323)
. |.+.. . ++++.+. ..-+.++++.... ..+...+++++++
T Consensus 88 ~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g~~~~~~~l~~~~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~ 167 (344)
T PRK05286 88 VGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADALAERLKKAYRGIPLGINIGKNKDTPLEDAVDDYLICLEKLY 167 (344)
T ss_pred eCCcCCCCCCCCCCCCEEecccccccccCCCCCCHhHHHHHHHHHHhcCCCcEEEEEecCCCCCcccCHHHHHHHHHHHH
Confidence 3 43211 0 1222221 1124566664321 2334444444443
Q ss_pred HcCCcEEEEecCCCCCC-chHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcC
Q 020636 147 RAGFKAIALTVDTPRLG-RREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITK 225 (323)
Q Consensus 147 ~~G~~al~itvd~p~~g-~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~ 225 (323)
+ +++++.+|+.||... .| ...+++...+.++++|+.++
T Consensus 168 ~-~ad~lelN~scP~~~g~~----------------------------------------~~~~~~~~~eiv~aVr~~~~ 206 (344)
T PRK05286 168 P-YADYFTVNISSPNTPGLR----------------------------------------DLQYGEALDELLAALKEAQA 206 (344)
T ss_pred h-hCCEEEEEccCCCCCCcc----------------------------------------cccCHHHHHHHHHHHHHHHh
Confidence 3 477777777777531 00 01133344577899999886
Q ss_pred -----CCEEEeccC--C----HHHHHHHHHcCCCEEEEcCCCCCC----------CCC---Cc----chHHHHHHHHHHh
Q 020636 226 -----LPILVKGVL--T----AEDARIAVQAGAAGIIVSNHGARQ----------LDY---VP----ATIMALEEVVKAT 277 (323)
Q Consensus 226 -----~pv~vK~i~--~----~e~a~~~~~~Gad~i~vs~~gg~~----------~~~---~~----~~~~~l~~i~~~~ 277 (323)
+||++|... + .+.|+.+.++|+|+|+++|.-... ..+ ++ ..++.+.++++.+
T Consensus 207 ~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~ 286 (344)
T PRK05286 207 ELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKEL 286 (344)
T ss_pred ccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHh
Confidence 999999763 2 344788889999999998853100 011 12 2566788888887
Q ss_pred cCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC-c-chhhhc
Q 020636 278 QGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC-P-LTEKIN 322 (323)
Q Consensus 278 ~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~-~-~~~~~~ 322 (323)
++++|||++|||+|++|+.+++.+|||+|++||+++.. | ++++|+
T Consensus 287 ~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~ 333 (344)
T PRK05286 287 GGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIV 333 (344)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHH
Confidence 66799999999999999999999999999999999753 5 444443
No 49
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=99.77 E-value=1.2e-17 Score=151.17 Aligned_cols=194 Identities=15% Similarity=0.120 Sum_probs=137.2
Q ss_pred ceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCC----------------------CCHHHH----H--hcCCCc
Q 020636 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST----------------------SSVEEV----A--STGPGI 124 (323)
Q Consensus 73 Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~----------------------~~~eei----~--~~~~~~ 124 (323)
|+++|||++. ++.+++++..+++...+++.++. .+++-+ . +..+.+
T Consensus 1 ~~~lApMag~------td~~f~~~~~~~~g~~~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~~~~~~~~p 74 (233)
T cd02911 1 PVALASMAGI------TDGDFCRKRADHAGLVFLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIKALKDSNVL 74 (233)
T ss_pred CceeeecCCC------cCHHHHHhhCccCCEEEEcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHHHhhccCCe
Confidence 8999999885 45589985444444455543321 122222 1 112357
Q ss_pred eeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHH
Q 020636 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV 204 (323)
Q Consensus 125 ~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (323)
..+|++ ..+++.+.+.++++++. ++.|.+|+.||+.- +. ..+.|+.+
T Consensus 75 ~~vqi~-g~~~~~~~~aa~~~~~~-~~~ielN~gCP~~~---------------v~------------~~g~G~~L---- 121 (233)
T cd02911 75 VGVNVR-SSSLEPLLNAAALVAKN-AAILEINAHCRQPE---------------MV------------EAGAGEAL---- 121 (233)
T ss_pred EEEEec-CCCHHHHHHHHHHHhhc-CCEEEEECCCCcHH---------------Hh------------cCCcchHH----
Confidence 899998 57888888888888774 59999999999731 00 00112222
Q ss_pred hhccCCccCHHHHHHHHHhcCCCEEEecc-----CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcC
Q 020636 205 AGQIDRSLSWKDVKWLQTITKLPILVKGV-----LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG 279 (323)
Q Consensus 205 ~~~~~~~~~~~~i~~i~~~~~~pv~vK~i-----~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~ 279 (323)
..+|+...+.++.+++ .+.||.+|.. .+.+-++.+.++|+|+|.+++.. .+....++.+++++ +
T Consensus 122 --l~~p~~l~eiv~avr~-~~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~~~~----~g~~ad~~~I~~i~--~-- 190 (233)
T cd02911 122 --LKDPERLSEFIKALKE-TGVPVSVKIRAGVDVDDEELARLIEKAGADIIHVDAMD----PGNHADLKKIRDIS--T-- 190 (233)
T ss_pred --cCCHHHHHHHHHHHHh-cCCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEECcCC----CCCCCcHHHHHHhc--C--
Confidence 1366677788999987 5999999964 34566888999999998775321 12345677777775 4
Q ss_pred CCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcch
Q 020636 280 RIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 280 ~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~ 318 (323)
++|||++|||.+++|+.+++..|||+||+||+ +.||.
T Consensus 191 ~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~--~~p~~ 227 (233)
T cd02911 191 ELFIIGNNSVTTIESAKEMFSYGADMVSVARA--SLPEN 227 (233)
T ss_pred CCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC--CCchH
Confidence 79999999999999999999999999999999 77764
No 50
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.76 E-value=3e-17 Score=163.53 Aligned_cols=104 Identities=31% Similarity=0.398 Sum_probs=89.7
Q ss_pred CHHHHHHHHHhc-CCCEEEeccCCHHHHHHHHHcCCCEEEEcC-----CCCCCCC-CCcchHHHHHHHHHHhc-CCCeEE
Q 020636 213 SWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSN-----HGARQLD-YVPATIMALEEVVKATQ-GRIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~-~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~-----~gg~~~~-~~~~~~~~l~~i~~~~~-~~~pvi 284 (323)
.++.++++++.+ +.||+++.+.|.++|+.+.++|+|+|.++. |+++..+ .+.|+++++.++.+.+. .++|||
T Consensus 256 vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~vi 335 (486)
T PRK05567 256 VLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVI 335 (486)
T ss_pred HHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEE
Confidence 466799999998 799999999999999999999999999843 3334443 35788999999987663 369999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 285 LDGGVRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 285 a~GGI~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
++|||+++.|++|||++|||+||+|++|.++.
T Consensus 336 adGGi~~~~di~kAla~GA~~v~~G~~~a~~~ 367 (486)
T PRK05567 336 ADGGIRYSGDIAKALAAGASAVMLGSMLAGTE 367 (486)
T ss_pred EcCCCCCHHHHHHHHHhCCCEEEECccccccc
Confidence 99999999999999999999999999998864
No 51
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=99.76 E-value=3.6e-17 Score=157.20 Aligned_cols=220 Identities=20% Similarity=0.255 Sum_probs=149.4
Q ss_pred CCCCccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecC-CCC-----------------------
Q 020636 56 VSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSS-WST----------------------- 111 (323)
Q Consensus 56 ~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~-~s~----------------------- 111 (323)
.+..|++|+|+|.+|++||++|.-.. .......+.+.++|.+.++.- .+.
T Consensus 6 ~~~~dLst~~~Gl~l~NP~i~ASgp~------t~~~e~~~~~~~~g~GAVV~KTi~~~~~~~~n~~pr~~~~~~g~~~~~ 79 (385)
T PLN02495 6 ASEPDLSVTVNGLKMPNPFVIGSGPP------GTNYTVMKRAFDEGWGGVIAKTVSLDASKVINVTPRYARLRAGANGSA 79 (385)
T ss_pred cCCCcceEEECCEEcCCCcEeCCccC------CCCHHHHHHHHhcCCeEEEeccccCCccccCCCCCeEEecCccccccc
Confidence 35678999999999999999997322 123345555566687776631 110
Q ss_pred --C-------------CH----HHHHh---cCC-CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHH
Q 020636 112 --S-------------SV----EEVAS---TGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREAD 168 (323)
Q Consensus 112 --~-------------~~----eei~~---~~~-~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d 168 (323)
. ++ +++.+ ..+ .+.+..+....+.+...+++++++++|++++.+|+.||... .+++
T Consensus 80 ~~n~iGl~N~~~~s~~g~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~-~~r~ 158 (385)
T PLN02495 80 KGRVIGWQNIELISDRPFETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGM-PERK 158 (385)
T ss_pred ccccccccCcccccccCHHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCC-CcCc
Confidence 0 12 22222 223 36777775446788888899999999999999999998731 0000
Q ss_pred HhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCH----HHHHHHHH
Q 020636 169 IKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA----EDARIAVQ 244 (323)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~----e~a~~~~~ 244 (323)
. +.. ...+++...+.++++++.+++||++|...+. +.|+.+.+
T Consensus 159 ~---------------------------g~~------~gq~~e~~~~i~~~Vk~~~~iPv~vKLsPn~t~i~~ia~aa~~ 205 (385)
T PLN02495 159 M---------------------------GAA------VGQDCDLLEEVCGWINAKATVPVWAKMTPNITDITQPARVALK 205 (385)
T ss_pred c---------------------------chh------hccCHHHHHHHHHHHHHhhcCceEEEeCCChhhHHHHHHHHHH
Confidence 0 000 0124555667789999988999999977433 44778899
Q ss_pred cCCCEEEEcCCCCC--CC----------------CCC-------cchHHHHHHHHHHhc----CCCeEEEecCCCCHHHH
Q 020636 245 AGAAGIIVSNHGAR--QL----------------DYV-------PATIMALEEVVKATQ----GRIPVFLDGGVRRGTDV 295 (323)
Q Consensus 245 ~Gad~i~vs~~gg~--~~----------------~~~-------~~~~~~l~~i~~~~~----~~~pvia~GGI~~~~di 295 (323)
.|+|+|++.|.-.. .. .++ +.++..+.++.+.+. .++|||+.|||.+++|+
T Consensus 206 ~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da 285 (385)
T PLN02495 206 SGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDA 285 (385)
T ss_pred hCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHH
Confidence 99999999885321 01 011 112334455555552 25899999999999999
Q ss_pred HHHHHcCCCEEEEccccccC
Q 020636 296 FKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 296 ~kal~lGAd~V~iG~~~~~~ 315 (323)
++.|.+||++|++||+++..
T Consensus 286 ~e~i~aGAs~VQv~Ta~~~~ 305 (385)
T PLN02495 286 AEFILLGADTVQVCTGVMMH 305 (385)
T ss_pred HHHHHhCCCceeEeeeeeec
Confidence 99999999999999998765
No 52
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=99.76 E-value=3.7e-17 Score=160.29 Aligned_cols=215 Identities=22% Similarity=0.260 Sum_probs=146.7
Q ss_pred CccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeec-CCC---------------------------
Q 020636 59 IDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWS--------------------------- 110 (323)
Q Consensus 59 ~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~s--------------------------- 110 (323)
.|++|+++|.+|++||++|+=.. +.. ...+.+.. ++|.++++. |.+
T Consensus 2 ~~L~~~~~Gl~l~nPv~~aag~~---~~~--~~~~~~~~-~~g~Gavv~kti~~~~gn~~~pr~~~~~~~~~~~~g~~n~ 75 (420)
T PRK08318 2 ADLSITFCGIKSPNPFWLASAPP---TNK--YYNVARAF-EAGWGGVVWKTLGPPIVNVSSPRFGALVKEDRRFIGFNNI 75 (420)
T ss_pred CCceEEECCEecCCCcEeCCcCC---CCC--HHHHHHHH-HhCCCEEEEeecCCCCCCCCCCeEEEecCCCcccccccCc
Confidence 37899999999999999996211 111 22333333 346554321 110
Q ss_pred ----CCCHHH----H---HhcCC-CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCC-CchHHHHhhccCCCC
Q 020636 111 ----TSSVEE----V---ASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL-GRREADIKNRFTLPP 177 (323)
Q Consensus 111 ----~~~~ee----i---~~~~~-~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~-g~r~~d~~~~~~~~~ 177 (323)
...+++ + ....+ .+.++|+....+.+...+.++.+++.|+++|.+|+.||.. +.| + +
T Consensus 76 ~~~s~~~~~~~~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~--~----~---- 145 (420)
T PRK08318 76 ELITDRPLEVNLREIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSER--G----M---- 145 (420)
T ss_pred ccccccCHHHHHHHHHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCcccc--C----C----
Confidence 001221 1 11222 5578999754377888889999999999999999999972 110 0 0
Q ss_pred ccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCC----HHHHHHHHHcCCCEEEEc
Q 020636 178 FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLT----AEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~----~e~a~~~~~~Gad~i~vs 253 (323)
+..+ ..+++...+.++++++.+++||++|...+ .+.|+.+.++|+|+|++.
T Consensus 146 -------------------g~~~------~~~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~~ 200 (420)
T PRK08318 146 -------------------GSAV------GQVPELVEMYTRWVKRGSRLPVIVKLTPNITDIREPARAAKRGGADAVSLI 200 (420)
T ss_pred -------------------cccc------cCCHHHHHHHHHHHHhccCCcEEEEcCCCcccHHHHHHHHHHCCCCEEEEe
Confidence 0000 12555667789999998899999997643 355788899999999976
Q ss_pred CCCCC---------------------CCCCCcc----hHHHHHHHHHHhc-CCCeEEEecCCCCHHHHHHHHHcCCCEEE
Q 020636 254 NHGAR---------------------QLDYVPA----TIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIF 307 (323)
Q Consensus 254 ~~gg~---------------------~~~~~~~----~~~~l~~i~~~~~-~~~pvia~GGI~~~~di~kal~lGAd~V~ 307 (323)
|.-.. +...+++ +++.+.++++.++ .++|||++|||.|++|+.++|.+|||+||
T Consensus 201 Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vq 280 (420)
T PRK08318 201 NTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQ 280 (420)
T ss_pred cccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChhe
Confidence 54211 0111222 4788888887763 27999999999999999999999999999
Q ss_pred Ecccccc
Q 020636 308 VSIMPCQ 314 (323)
Q Consensus 308 iG~~~~~ 314 (323)
|||+++.
T Consensus 281 i~ta~~~ 287 (420)
T PRK08318 281 VCTAAMQ 287 (420)
T ss_pred eeeeecc
Confidence 9999877
No 53
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.76 E-value=5.2e-17 Score=160.54 Aligned_cols=110 Identities=26% Similarity=0.234 Sum_probs=90.9
Q ss_pred cCCccCHHHHHHHHHhc-CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCC------CCCcchHHHHHHHHHHhcC-
Q 020636 208 IDRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL------DYVPATIMALEEVVKATQG- 279 (323)
Q Consensus 208 ~~~~~~~~~i~~i~~~~-~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~------~~~~~~~~~l~~i~~~~~~- 279 (323)
+++....+.+++|++.+ +.||++..+.|.+.++.+.++|||+|.|+..+|+.. ..+.+.+..+.++.+....
T Consensus 248 g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~ 327 (475)
T TIGR01303 248 GHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKL 327 (475)
T ss_pred CCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHc
Confidence 34445567899999987 689999779999999999999999999988777532 2356677777776554422
Q ss_pred CCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 280 RIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 280 ~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
.+|||++|||+++.|++|||++||++||+|+.|.++.+
T Consensus 328 ~~~viadGgi~~~~di~kala~GA~~vm~g~~~ag~~e 365 (475)
T TIGR01303 328 GGHVWADGGVRHPRDVALALAAGASNVMVGSWFAGTYE 365 (475)
T ss_pred CCcEEEeCCCCCHHHHHHHHHcCCCEEeechhhccccc
Confidence 69999999999999999999999999999999998764
No 54
>PLN02826 dihydroorotate dehydrogenase
Probab=99.75 E-value=1.8e-16 Score=153.83 Aligned_cols=92 Identities=33% Similarity=0.419 Sum_probs=74.1
Q ss_pred cCCCEEEecc--CCHHH----HHHHHHcCCCEEEEcCCCC-C----------CCCCC-------cchHHHHHHHHHHhcC
Q 020636 224 TKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGA-R----------QLDYV-------PATIMALEEVVKATQG 279 (323)
Q Consensus 224 ~~~pv~vK~i--~~~e~----a~~~~~~Gad~i~vs~~gg-~----------~~~~~-------~~~~~~l~~i~~~~~~ 279 (323)
.++||++|.. .+.++ |+.+.+.|+|+|+++|..- + +..++ +.+++.+.++.+.+++
T Consensus 261 ~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~ 340 (409)
T PLN02826 261 GPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRG 340 (409)
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCC
Confidence 4689999985 45445 7889999999999998531 1 11121 2357888999888877
Q ss_pred CCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 280 RIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 280 ~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
++|||++|||.|++|+++.+.+||++|++||+|+..
T Consensus 341 ~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~~ 376 (409)
T PLN02826 341 KIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAYE 376 (409)
T ss_pred CCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHhc
Confidence 899999999999999999999999999999998764
No 55
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=99.74 E-value=2.3e-16 Score=148.41 Aligned_cols=184 Identities=21% Similarity=0.210 Sum_probs=132.1
Q ss_pred eecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHH-------HhcCCCceeEEeeecCChH
Q 020636 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------ASTGPGIRFFQLYVYKDRN 136 (323)
Q Consensus 64 ~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei-------~~~~~~~~~~QLy~~~d~~ 136 (323)
+++|. +.||+.+||++. .++ .++.++.++|...+++... .+.|++ ++....|+.+.+....+ .
T Consensus 6 ~~lgi--~~Pii~apM~~~--s~~----~la~avs~aGglG~l~~~~-~~~~~l~~~i~~~~~~t~~pfgvn~~~~~~-~ 75 (307)
T TIGR03151 6 DLLGI--EYPIFQGGMAWV--ATG----SLAAAVSNAGGLGIIGAGN-APPDVVRKEIRKVKELTDKPFGVNIMLLSP-F 75 (307)
T ss_pred HHhCC--CCCEEcCCCCCC--CCH----HHHHHHHhCCCcceecccc-CCHHHHHHHHHHHHHhcCCCcEEeeecCCC-C
Confidence 34554 489999999873 444 7999999999999988532 233333 22233566666543221 1
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHH
Q 020636 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKD 216 (323)
Q Consensus 137 ~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (323)
..+.++.+.+.|++.+.++.+ .| .+.
T Consensus 76 -~~~~~~~~~~~~v~~v~~~~g--------------------------------------------------~p---~~~ 101 (307)
T TIGR03151 76 -VDELVDLVIEEKVPVVTTGAG--------------------------------------------------NP---GKY 101 (307)
T ss_pred -HHHHHHHHHhCCCCEEEEcCC--------------------------------------------------Cc---HHH
Confidence 234556666777776654211 11 235
Q ss_pred HHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCC--CCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHH
Q 020636 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 294 (323)
Q Consensus 217 i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~d 294 (323)
++++++. +.+++ -.+.+.++++.+.++|+|.|++.++ ||+ .+..+++.+++++.+.+ ++|||++|||.++.|
T Consensus 102 i~~lk~~-g~~v~-~~v~s~~~a~~a~~~GaD~Ivv~g~eagGh--~g~~~~~~ll~~v~~~~--~iPviaaGGI~~~~~ 175 (307)
T TIGR03151 102 IPRLKEN-GVKVI-PVVASVALAKRMEKAGADAVIAEGMESGGH--IGELTTMALVPQVVDAV--SIPVIAAGGIADGRG 175 (307)
T ss_pred HHHHHHc-CCEEE-EEcCCHHHHHHHHHcCCCEEEEECcccCCC--CCCCcHHHHHHHHHHHh--CCCEEEECCCCCHHH
Confidence 6677665 55554 4678999999999999999999876 333 23446789999999888 799999999999999
Q ss_pred HHHHHHcCCCEEEEccccccCcc
Q 020636 295 VFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 295 i~kal~lGAd~V~iG~~~~~~~~ 317 (323)
+.+++++||++|++||.|+.+++
T Consensus 176 ~~~al~~GA~gV~iGt~f~~t~E 198 (307)
T TIGR03151 176 MAAAFALGAEAVQMGTRFLCAKE 198 (307)
T ss_pred HHHHHHcCCCEeecchHHhcccc
Confidence 99999999999999999988654
No 56
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.74 E-value=3.5e-16 Score=145.68 Aligned_cols=113 Identities=29% Similarity=0.402 Sum_probs=89.9
Q ss_pred CCccCHHHHHHHHHhcCCCEEEeccCCHHH----HHHHHHcCCCEEEEcCCCCCCC--------------CCC-------
Q 020636 209 DRSLSWKDVKWLQTITKLPILVKGVLTAED----ARIAVQAGAAGIIVSNHGARQL--------------DYV------- 263 (323)
Q Consensus 209 ~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~----a~~~~~~Gad~i~vs~~gg~~~--------------~~~------- 263 (323)
+++..-+.++++++..++||++|...+.++ |+.+.++|+|+|++.|...... .++
T Consensus 145 ~~e~l~~l~~~vk~~~~~Pv~vKl~P~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ik 224 (310)
T COG0167 145 DPELLEKLLEAVKAATKVPVFVKLAPNITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLK 224 (310)
T ss_pred CHHHHHHHHHHHHhcccCceEEEeCCCHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccch
Confidence 555556678899999999999998765444 7888999999999998533111 111
Q ss_pred cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC-c-chhhh
Q 020636 264 PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC-P-LTEKI 321 (323)
Q Consensus 264 ~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~-~-~~~~~ 321 (323)
+-++..++++.+.+..++|||+.|||.|++|+++.+.+||++|++||+++.. | .+++|
T Consensus 225 p~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~~I 284 (310)
T COG0167 225 PIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPGIVKEI 284 (310)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeeeeCchHHHHH
Confidence 3357788999988866899999999999999999999999999999999875 4 34444
No 57
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=99.73 E-value=3.5e-16 Score=148.70 Aligned_cols=203 Identities=23% Similarity=0.251 Sum_probs=115.9
Q ss_pred eecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHH-------HHhcCCCceeEEeeecCChH
Q 020636 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEE-------VASTGPGIRFFQLYVYKDRN 136 (323)
Q Consensus 64 ~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~ee-------i~~~~~~~~~~QLy~~~d~~ 136 (323)
+++|. +.||+.+||++ +.+| .|+-+..++|...+++.. ..+.++ +++..+.++.+.+.......
T Consensus 6 ~~lgi--~~PIiqapM~~--is~~----~LaaAVs~aGglG~l~~~-~~~~~~l~~~i~~~~~~t~~pfgvnl~~~~~~~ 76 (330)
T PF03060_consen 6 ELLGI--KYPIIQAPMGG--ISTP----ELAAAVSNAGGLGFLGAG-GLTPEQLREEIRKIRALTDKPFGVNLFLPPPDP 76 (330)
T ss_dssp HHHT---SSSEEE---TT--TSSH----HHHHHHHHTTSBEEEECT-TSSHHHHHHHHHHHHHH-SS-EEEEEETTSTTH
T ss_pred HHhCC--CcCEEcCCCCC--CChH----HHHHHHHhCCCEeecccc-ccChHHHHHHHHHHHhhccccccccccccCccc
Confidence 34554 58999999987 3555 799999999999999954 333333 33334467777776544332
Q ss_pred HHH----------HHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhh
Q 020636 137 VVA----------QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAG 206 (323)
Q Consensus 137 ~~~----------~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (323)
... ..++...+.+.. . +..+..-+. .++.. ....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~----~~~~~~~~~--~~~~~---------------------v~~~ 120 (330)
T PF03060_consen 77 ADEEDAWPKELGNAVLELCIEEGVP---------F----EEQLDVALE--AKPDV---------------------VSFG 120 (330)
T ss_dssp HHH-HHHHHHTHHHHHHHHHHTT-S---------H----HHHHHHHHH--S--SE---------------------EEEE
T ss_pred chhhhhhhhhhHHHHHHHHHHhCcc---------c----ccccccccc--cceEE---------------------EEee
Confidence 222 011112222322 0 000000000 00000 0000
Q ss_pred ccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCC--CCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 207 QIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 207 ~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
.+.| ..+.++.+++. ++.++ -.+.++++|+.+.+.|+|+|++.++ ||+......+.+.+++++.+.+ ++|||
T Consensus 121 ~G~p--~~~~i~~l~~~-gi~v~-~~v~s~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~--~iPVi 194 (330)
T PF03060_consen 121 FGLP--PPEVIERLHAA-GIKVI-PQVTSVREARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAV--DIPVI 194 (330)
T ss_dssp SSSC---HHHHHHHHHT-T-EEE-EEESSHHHHHHHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH---SS-EE
T ss_pred cccc--hHHHHHHHHHc-CCccc-cccCCHHHHHHhhhcCCCEEEEeccccCCCCCccccceeeHHHHHhhhc--CCcEE
Confidence 1111 13456666664 55444 4578999999999999999999875 5554311125788999999988 79999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 285 LDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 285 a~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
+.|||.++.++..+|++||++|++||+|+.+++
T Consensus 195 aAGGI~dg~~iaaal~lGA~gV~~GTrFl~t~E 227 (330)
T PF03060_consen 195 AAGGIADGRGIAAALALGADGVQMGTRFLATEE 227 (330)
T ss_dssp EESS--SHHHHHHHHHCT-SEEEESHHHHTSTT
T ss_pred EecCcCCHHHHHHHHHcCCCEeecCCeEEeccc
Confidence 999999999999999999999999999998754
No 58
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=2.4e-16 Score=146.95 Aligned_cols=211 Identities=21% Similarity=0.195 Sum_probs=158.4
Q ss_pred cCcccccce-EECcccccccCCcHHHHHHHHHHHHcCCceeecCCCC-CC-H--HHHH----hcC--CCceeEEeeecCC
Q 020636 66 LGFKISMPI-MIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST-SS-V--EEVA----STG--PGIRFFQLYVYKD 134 (323)
Q Consensus 66 ~g~~~~~Pi-~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~-~~-~--eei~----~~~--~~~~~~QLy~~~d 134 (323)
|-.+...|. ++|||-.. .|+++++.+++.|.-.+.+.|-. .+ + |..+ ... +.|.++|+- ..|
T Consensus 12 f~~~~~~~~ri~APMvd~------S~l~fR~L~R~y~~~l~yTpMi~a~~fv~~ek~r~~~~st~~~D~PLIvQf~-~nd 84 (358)
T KOG2335|consen 12 FWSKQGRPKRIVAPMVDY------SELAFRRLVRLYGADLLYTPMIHAKTFVHSEKYRDSELSTSPEDRPLIVQFG-GND 84 (358)
T ss_pred hhhhcCCcccccCCcccc------cHHHHHHHHHHhCCceEechHHHHHHHhcCccchhhhcccCCCCCceEEEEc-CCC
Confidence 333444443 69998543 68899999999999888887621 00 0 1111 111 268999986 589
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCH
Q 020636 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW 214 (323)
Q Consensus 135 ~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (323)
++.+.+.++.++..+ ++|.||++||.. .-.+.+| |+.+ +.++++.-
T Consensus 85 p~~ll~Aa~lv~~y~-D~idlNcGCPq~----~a~~g~y-----------------------Ga~L------~~~~eLv~ 130 (358)
T KOG2335|consen 85 PENLLKAARLVQPYC-DGIDLNCGCPQK----VAKRGGY-----------------------GAFL------MDNPELVG 130 (358)
T ss_pred HHHHHHHHHHhhhhc-CcccccCCCCHH----HHhcCCc-----------------------ccee------ccCHHHHH
Confidence 998888888888876 999999999952 1112222 1111 23566777
Q ss_pred HHHHHHHHhcCCCEEEecc------CCHHHHHHHHHcCCCEEEEcCCCCCCC--CCCcchHHHHHHHHHHhcCCCeEEEe
Q 020636 215 KDVKWLQTITKLPILVKGV------LTAEDARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLD 286 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~vK~i------~~~e~a~~~~~~Gad~i~vs~~gg~~~--~~~~~~~~~l~~i~~~~~~~~pvia~ 286 (323)
+.++.+++.++.||.+|.. .|.+.++.+.++|++.+.|+++...+. ..++..++.+..+++.+++ +|||++
T Consensus 131 e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~-ipviaN 209 (358)
T KOG2335|consen 131 EMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPD-IPVIAN 209 (358)
T ss_pred HHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcC-CcEEee
Confidence 7899999999999999964 467789999999999999955433222 2567789999999999963 999999
Q ss_pred cCCCCHHHHHHHHH-cCCCEEEEccccccCcch
Q 020636 287 GGVRRGTDVFKALA-LGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 287 GGI~~~~di~kal~-lGAd~V~iG~~~~~~~~~ 318 (323)
|+|.+..|+..++. .|||+||.|+.++.+|+.
T Consensus 210 GnI~~~~d~~~~~~~tG~dGVM~arglL~NPa~ 242 (358)
T KOG2335|consen 210 GNILSLEDVERCLKYTGADGVMSARGLLYNPAL 242 (358)
T ss_pred CCcCcHHHHHHHHHHhCCceEEecchhhcCchh
Confidence 99999999999999 999999999999999975
No 59
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.70 E-value=1.1e-15 Score=151.23 Aligned_cols=107 Identities=27% Similarity=0.293 Sum_probs=89.3
Q ss_pred ccCHHHHHHHHHhc-CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCC----C--CCCcchHHHHHHHHHHhcC-CCe
Q 020636 211 SLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ----L--DYVPATIMALEEVVKATQG-RIP 282 (323)
Q Consensus 211 ~~~~~~i~~i~~~~-~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~----~--~~~~~~~~~l~~i~~~~~~-~~p 282 (323)
...++.|++||+.+ +.+|+...+.|.+.|+.+.++|||+|.|.-..|.- . ..+.|.+.++.++.+.... ++|
T Consensus 253 ~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~ 332 (479)
T PRK07807 253 EKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAH 332 (479)
T ss_pred HHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCc
Confidence 34577899999998 58888889999999999999999999885444321 1 1245788889888875532 699
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 283 VFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 283 via~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
||++|||+++.|+.|+|++||++||+|++|+++.+
T Consensus 333 via~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~E 367 (479)
T PRK07807 333 VWADGGVRHPRDVALALAAGASNVMIGSWFAGTYE 367 (479)
T ss_pred EEecCCCCCHHHHHHHHHcCCCeeeccHhhccCcc
Confidence 99999999999999999999999999999999864
No 60
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=99.69 E-value=2.3e-15 Score=143.20 Aligned_cols=113 Identities=20% Similarity=0.233 Sum_probs=83.0
Q ss_pred CccCHHHHHHHHHhcC-------CCEEEeccC--C----HHHHHHHHHcCCCEEEEcCCCCC----------CCCCC---
Q 020636 210 RSLSWKDVKWLQTITK-------LPILVKGVL--T----AEDARIAVQAGAAGIIVSNHGAR----------QLDYV--- 263 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~~-------~pv~vK~i~--~----~e~a~~~~~~Gad~i~vs~~gg~----------~~~~~--- 263 (323)
++...+.++++++.++ +||++|... + .+.|+.+.++|+|+|++.|.-.. ...++
T Consensus 188 ~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG 267 (335)
T TIGR01036 188 KAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSG 267 (335)
T ss_pred HHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccC
Confidence 4444566788877765 999999763 2 34477889999999999885310 00111
Q ss_pred ----cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC-cc-hhhhc
Q 020636 264 ----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC-PL-TEKIN 322 (323)
Q Consensus 264 ----~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~-~~-~~~~~ 322 (323)
+-.+..+.++.+.+++++|||+.|||.+++|+.+++.+||++|++||+++.. |. .++|+
T Consensus 268 ~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~~Gp~~~~~i~ 332 (335)
T TIGR01036 268 KPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIYWGPPLVKEIV 332 (335)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHHhCchHHHHHH
Confidence 2245667777777766799999999999999999999999999999998663 54 44443
No 61
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=99.67 E-value=1.4e-15 Score=143.35 Aligned_cols=218 Identities=16% Similarity=0.110 Sum_probs=143.0
Q ss_pred ccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeec-CCCC--------------------------C
Q 020636 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST--------------------------S 112 (323)
Q Consensus 60 d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~s~--------------------------~ 112 (323)
|++|+++|.+|++||++|.=... ......+.+.++|.++++. |.+. .
T Consensus 1 dL~~~~~Gl~l~NPv~~AsG~~~------~~~e~~~~~~~~g~Gavv~ktit~~p~~gn~~pr~~~~~~~~~N~~Gl~n~ 74 (310)
T PRK02506 1 STSTQIAGFKFDNCLMNAAGVYC------MTKEELEEVEASAAGAFVTKSATLEPRPGNPEPRYADTPLGSINSMGLPNL 74 (310)
T ss_pred CCceEECCEECCCCCEeCCCCCC------CCHHHHHHHHHcCCcEEEeCccCCCCCCCCCCCeEEECcchhhccCCCCCc
Confidence 67899999999999999972221 1223444577888777643 4321 1
Q ss_pred C----HHHHHhc---C-CCceeEEeeecCChHHHHHHHHHHHHcC-CcEEEEecCCCCCCchHHHHhhccCCCCcccccc
Q 020636 113 S----VEEVAST---G-PGIRFFQLYVYKDRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183 (323)
Q Consensus 113 ~----~eei~~~---~-~~~~~~QLy~~~d~~~~~~~~~~a~~~G-~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~ 183 (323)
. ++++.+. . ..+.+.++. ..+.+...+.+++++++| ++++.+|+-||.... . +
T Consensus 75 g~~~~~~~i~~~~~~~~~~pvI~Si~-G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~-------------~---~- 136 (310)
T PRK02506 75 GFDYYLDYVLELQKKGPNKPHFLSVV-GLSPEETHTILKKIQASDFNGLVELNLSCPNVPG-------------K---P- 136 (310)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEEE-eCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCC-------------c---c-
Confidence 1 2223221 1 145667775 356677778888888888 899999999986210 0 0
Q ss_pred ccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCC---HHHHHHHH---HcCCCEEEEcCCC-
Q 020636 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLT---AEDARIAV---QAGAAGIIVSNHG- 256 (323)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~---~e~a~~~~---~~Gad~i~vs~~g- 256 (323)
. ...|++...+.++++++.+++||++|.... .+.++.+. +.|+++|...|.-
T Consensus 137 -------------------~--~g~d~~~~~~i~~~v~~~~~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i~~~nt~~ 195 (310)
T PRK02506 137 -------------------Q--IAYDFETTEQILEEVFTYFTKPLGVKLPPYFDIVHFDQAAAIFNKFPLAFVNCINSIG 195 (310)
T ss_pred -------------------c--cccCHHHHHHHHHHHHHhcCCccEEecCCCCCHHHHHHHHHHhCcCceEEEEEeccCC
Confidence 0 012344456778999999999999997632 23343333 5567777665531
Q ss_pred ---------CCC-C-----CC---C----cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 257 ---------ARQ-L-----DY---V----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 257 ---------g~~-~-----~~---~----~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
++. + .+ + +..+..+.++.+.++.++|||+.|||.|++|+++++.+||++||+|++++.
T Consensus 196 ~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~ 275 (310)
T PRK02506 196 NGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHK 275 (310)
T ss_pred CceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHH
Confidence 110 0 01 1 234567777777776679999999999999999999999999999999875
Q ss_pred --Ccchhhhc
Q 020636 315 --CPLTEKIN 322 (323)
Q Consensus 315 --~~~~~~~~ 322 (323)
...+++|+
T Consensus 276 ~gp~~~~~i~ 285 (310)
T PRK02506 276 EGPAVFERLT 285 (310)
T ss_pred hChHHHHHHH
Confidence 33355543
No 62
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=99.65 E-value=7.9e-16 Score=144.63 Aligned_cols=112 Identities=25% Similarity=0.303 Sum_probs=86.4
Q ss_pred hccCCccCHHHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCC----C--CCCCcchHHHHHHHHHHhc
Q 020636 206 GQIDRSLSWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----Q--LDYVPATIMALEEVVKATQ 278 (323)
Q Consensus 206 ~~~~~~~~~~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~----~--~~~~~~~~~~l~~i~~~~~ 278 (323)
++++..+..+.|+|+++.++ +.|+...+.|.+.|+.++++|||++.|.-..|. | +.-+.|...++.++.+...
T Consensus 272 SqGnS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~va~~A~ 351 (503)
T KOG2550|consen 272 SQGNSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVGMGSGSICITQKVMACGRPQGTAVYKVAEFAN 351 (503)
T ss_pred CCCcchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCceeEeccccCceeeeceeeeccCCcccchhhHHHHHH
Confidence 45667778899999999985 567777789999999999999999999654442 1 1223344444444444332
Q ss_pred -CCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 279 -GRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 279 -~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
-.+|||+||||++..+++|||.+||+.||+|..|.++.+
T Consensus 352 q~gvpviADGGiq~~Ghi~KAl~lGAstVMmG~lLAgtTE 391 (503)
T KOG2550|consen 352 QFGVPCIADGGIQNVGHVVKALGLGASTVMMGGLLAGTTE 391 (503)
T ss_pred hcCCceeecCCcCccchhHhhhhcCchhheecceeeeeec
Confidence 279999999999999999999999999999999988643
No 63
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=99.63 E-value=1e-14 Score=139.05 Aligned_cols=222 Identities=24% Similarity=0.282 Sum_probs=122.2
Q ss_pred cccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEEeeecCChHHHHHHHHHHHH
Q 020636 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAER 147 (323)
Q Consensus 68 ~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~ 147 (323)
.+++.||+++.|+++.| .++.-.++|++++..|+..+.++.. .+.++... .....++|+- ........+.++
T Consensus 62 ~~l~~p~~is~MS~GaL-S~~a~~Ala~ga~~~G~~~ntGEGg-~~~~~~~~-~~~~~I~Q~~-sg~fGv~~~~l~---- 133 (368)
T PF01645_consen 62 LELSIPFMISAMSYGAL-SEEAKEALAKGANMAGTASNTGEGG-ELPEERKA-AKDLRIKQIA-SGRFGVRPEYLK---- 133 (368)
T ss_dssp HHHHTTEEEEEB-CTTC--HHHHHHHHHHHHHCT-EEEETTT----GGGCSB--TTSSEEEE--TT-TT--HHHHC----
T ss_pred hhheeeeecccCChhhc-CHHHHHHHHHHHHHhCceEecCCCC-CCHHHhcc-cCCceEEEcC-CCCCCCCHHHhc----
Confidence 35789999999999865 5667889999999999999999854 33343322 2222388963 334444444443
Q ss_pred cCCcEEEEecCCCCCCchHHHHhhccCCC-Ccccc--ccccccccCCCccccchhhHHHHhhccCCcc-C----HHHHHH
Q 020636 148 AGFKAIALTVDTPRLGRREADIKNRFTLP-PFLTL--KNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-S----WKDVKW 219 (323)
Q Consensus 148 ~G~~al~itvd~p~~g~r~~d~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~i~~ 219 (323)
.+++|-|.+.--... - .|-.+| .|++. +.+.+.+.+. ..+++...+++ + .+.|++
T Consensus 134 -~a~~iEIKigQGAKp---G---~GG~Lp~~KV~~~ia~~R~~~~g~----------~~iSP~~h~di~s~edl~~~I~~ 196 (368)
T PF01645_consen 134 -QADMIEIKIGQGAKP---G---EGGHLPGEKVTEEIARIRGVPPGV----------DLISPPPHHDIYSIEDLAQLIEE 196 (368)
T ss_dssp -C-SEEEEE---TTST---T---T--EE-GGG--HHHHHHHTS-TT------------EE--SS-TT-SSHHHHHHHHHH
T ss_pred -CCCeEEEEEecCccc---c---CcceechhhchHHHHHHhCCCCCC----------ccccCCCCCCcCCHHHHHHHHHH
Confidence 356666655432110 0 000011 11110 1111111110 01112222332 2 235888
Q ss_pred HHHhc-CCCEEEecc--CCHHHHHH-HHHcCCCEEEEcCCCC-CC-------CCCCcchHHHHHHHHHHh-----cCCCe
Q 020636 220 LQTIT-KLPILVKGV--LTAEDARI-AVQAGAAGIIVSNHGA-RQ-------LDYVPATIMALEEVVKAT-----QGRIP 282 (323)
Q Consensus 220 i~~~~-~~pv~vK~i--~~~e~a~~-~~~~Gad~i~vs~~gg-~~-------~~~~~~~~~~l~~i~~~~-----~~~~p 282 (323)
+|+.. +.||.+|.+ ...++... +.++|+|.|++++++| +. -+.+.|....|.++.+.+ ++++.
T Consensus 197 Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~ 276 (368)
T PF01645_consen 197 LRELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRVS 276 (368)
T ss_dssp HHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCSE
T ss_pred HHhhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceE
Confidence 89888 799999976 33444444 8899999999998754 31 134566677788877765 45799
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 283 VFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 283 via~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
|+++||++++.|++|+++||||+|.+||+++.
T Consensus 277 Li~sGgl~t~~dv~kalaLGAD~v~igt~~li 308 (368)
T PF01645_consen 277 LIASGGLRTGDDVAKALALGADAVYIGTAALI 308 (368)
T ss_dssp EEEESS--SHHHHHHHHHCT-SEEE-SHHHHH
T ss_pred EEEeCCccCHHHHHHHHhcCCCeeEecchhhh
Confidence 99999999999999999999999999998754
No 64
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=99.62 E-value=1.5e-14 Score=130.16 Aligned_cols=154 Identities=14% Similarity=0.050 Sum_probs=116.2
Q ss_pred CCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhH
Q 020636 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 201 (323)
Q Consensus 122 ~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (323)
+.+..+|+. ..+++...+.++.+++ +++.+.||+.||+. ++. ..+.|+.+
T Consensus 67 ~~~vivnv~-~~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~---------------~v~------------~~g~G~~L- 116 (231)
T TIGR00736 67 RALVSVNVR-FVDLEEAYDVLLTIAE-HADIIEINAHCRQP---------------EIT------------EIGIGQEL- 116 (231)
T ss_pred cCCEEEEEe-cCCHHHHHHHHHHHhc-CCCEEEEECCCCcH---------------HHc------------CCCCchhh-
Confidence 357899996 4688888888888766 79999999999983 000 00112211
Q ss_pred HHHhhccCCccCHHHHHHHHHhcCCCEEEeccC------CHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHH
Q 020636 202 AYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL------TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVK 275 (323)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~------~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~ 275 (323)
..||+...+.++.+++ .+.||.+|... +.+.++.+.++|+|+|.|. .+.. ......++.++++++
T Consensus 117 -----l~dp~~l~~iv~av~~-~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd--~~~~-g~~~a~~~~I~~i~~ 187 (231)
T TIGR00736 117 -----LKNKELLKEFLTKMKE-LNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVD--AMYP-GKPYADMDLLKILSE 187 (231)
T ss_pred -----cCCHHHHHHHHHHHHc-CCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEe--eCCC-CCchhhHHHHHHHHH
Confidence 1366666778888884 58999999652 3466899999999999994 2221 012267899999999
Q ss_pred HhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 276 ATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 276 ~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.++ ++|||++|||.|.+|+.+++..|||+||+||+++..
T Consensus 188 ~~~-~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l~~ 226 (231)
T TIGR00736 188 EFN-DKIIIGNNSIDDIESAKEMLKAGADFVSVARAILKG 226 (231)
T ss_pred hcC-CCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhccC
Confidence 873 399999999999999999999999999999988754
No 65
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=99.59 E-value=5.6e-15 Score=138.43 Aligned_cols=111 Identities=26% Similarity=0.276 Sum_probs=76.9
Q ss_pred cCHHHHHHHHHhcCCCEEEeccC---CHH---HHHHHHHcCCCEEEEcCCCCC----------CCC----C---C----c
Q 020636 212 LSWKDVKWLQTITKLPILVKGVL---TAE---DARIAVQAGAAGIIVSNHGAR----------QLD----Y---V----P 264 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~i~---~~e---~a~~~~~~Gad~i~vs~~gg~----------~~~----~---~----~ 264 (323)
...+.++++++..++|+++|... ..+ .+..+.+.|+|+|++.|.-+. ... + + +
T Consensus 149 ~~~~i~~~v~~~~~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p 228 (295)
T PF01180_consen 149 LVAEIVRAVREAVDIPVFVKLSPNFTDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRP 228 (295)
T ss_dssp HHHHHHHHHHHHHSSEEEEEE-STSSCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHH
T ss_pred HHHHHHHHHHhccCCCEEEEecCCCCchHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhh
Confidence 34456778888889999999764 332 355556889999998774211 111 1 1 2
Q ss_pred chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccc--cCcchhhhc
Q 020636 265 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPC--QCPLTEKIN 322 (323)
Q Consensus 265 ~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~--~~~~~~~~~ 322 (323)
.++..+.++++.++.++|||+.|||.|++|+.++|.+||++|+++|.++ +....++|+
T Consensus 229 ~aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~~Gp~~~~~i~ 288 (295)
T PF01180_consen 229 IALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIYRGPGVIRRIN 288 (295)
T ss_dssp HHHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEESHHHHHHGTTHHHHHH
T ss_pred HHHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhhcCcHHHHHHH
Confidence 3567788888888556999999999999999999999999999999883 344555554
No 66
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.56 E-value=3e-13 Score=126.79 Aligned_cols=184 Identities=15% Similarity=0.141 Sum_probs=124.7
Q ss_pred ccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHH-------Hhc-CCCceeEEeeecCChHHHHHHH
Q 020636 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------AST-GPGIRFFQLYVYKDRNVVAQLV 142 (323)
Q Consensus 71 ~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei-------~~~-~~~~~~~QLy~~~d~~~~~~~~ 142 (323)
+.||+.+||++. .. ...++.+..++|...+++... .+.|++ ++. ...|+.+.|-.+.+.....+.+
T Consensus 2 ~yPIiqgpM~~v--s~---~~~LaaAVS~AGgLG~la~~~-~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l 75 (320)
T cd04743 2 RYPIVQGPMTRV--SD---VAEFAVAVAEGGGLPFIALAL-MRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQL 75 (320)
T ss_pred CCCEECCCcCCC--CC---cHHHHHHHHhCCccccCCCCC-CCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHH
Confidence 579999999864 22 127999999999988887532 333332 221 2356666663322222334556
Q ss_pred HHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHH
Q 020636 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQT 222 (323)
Q Consensus 143 ~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 222 (323)
+.+.+.+++.+.++-+ +|. .++++++
T Consensus 76 ~vi~e~~v~~V~~~~G--------------------------------------------------~P~----~~~~lk~ 101 (320)
T cd04743 76 AVVRAIKPTFALIAGG--------------------------------------------------RPD----QARALEA 101 (320)
T ss_pred HHHHhcCCcEEEEcCC--------------------------------------------------ChH----HHHHHHH
Confidence 6666667665543311 121 1455555
Q ss_pred hcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCC--CCCCCCCCcchHHHHHHHHHHhc--------CCCeEEEecCCCCH
Q 020636 223 ITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQ--------GRIPVFLDGGVRRG 292 (323)
Q Consensus 223 ~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~--gg~~~~~~~~~~~~l~~i~~~~~--------~~~pvia~GGI~~~ 292 (323)
.+++++ -.+.|++.|+++.++|+|+|++.++ ||+. +..+++.+++++.+.+. .++|||+.|||.++
T Consensus 102 -~Gi~v~-~~v~s~~~A~~a~~~GaD~vVaqG~EAGGH~--G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dg 177 (320)
T cd04743 102 -IGISTY-LHVPSPGLLKQFLENGARKFIFEGRECGGHV--GPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDE 177 (320)
T ss_pred -CCCEEE-EEeCCHHHHHHHHHcCCCEEEEecCcCcCCC--CCCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCH
Confidence 355544 4468999999999999999999875 4543 34456666777665541 26999999999999
Q ss_pred HHHHHHHHcCC--------CEEEEccccccCcch
Q 020636 293 TDVFKALALGA--------SGIFVSIMPCQCPLT 318 (323)
Q Consensus 293 ~di~kal~lGA--------d~V~iG~~~~~~~~~ 318 (323)
..+..++++|| ++|++||+|+.+++-
T Consensus 178 r~~aaalaLGA~~~~~Ga~~GV~mGTrFl~t~Es 211 (320)
T cd04743 178 RSAAMVSALAAPLAERGAKVGVLMGTAYLFTEEA 211 (320)
T ss_pred HHHHHHHHcCCcccccccccEEEEccHHhcchhh
Confidence 99999999998 899999999987654
No 67
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=99.56 E-value=1e-13 Score=131.68 Aligned_cols=99 Identities=30% Similarity=0.412 Sum_probs=81.4
Q ss_pred HHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCC--CCCCC--CCCcchHHHHHHHHHHhcCC-CeEEEecC
Q 020636 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQL--DYVPATIMALEEVVKATQGR-IPVFLDGG 288 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~--gg~~~--~~~~~~~~~l~~i~~~~~~~-~pvia~GG 288 (323)
.+.++.+++ .+..++ -.+.+...|+++.++|+|+|++.+. ||+.- +..++++.+++++++++ + +|||++||
T Consensus 117 ~~~i~~~~~-~g~~v~-~~v~~~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~--~~iPViAAGG 192 (336)
T COG2070 117 AEFVARLKA-AGIKVI-HSVITVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAV--DGIPVIAAGG 192 (336)
T ss_pred HHHHHHHHH-cCCeEE-EEeCCHHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHh--cCCCEEEecC
Confidence 456777766 455444 4467899999999999999999764 44432 33567789999999999 6 99999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 289 VRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 289 I~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
|.++.++..||++||++|++||+|+.+.
T Consensus 193 I~dg~~i~AAlalGA~gVq~GT~Fl~t~ 220 (336)
T COG2070 193 IADGRGIAAALALGADGVQMGTRFLATK 220 (336)
T ss_pred ccChHHHHHHHHhccHHHHhhhhhhccc
Confidence 9999999999999999999999999864
No 68
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.54 E-value=6.3e-13 Score=128.66 Aligned_cols=221 Identities=18% Similarity=0.151 Sum_probs=133.5
Q ss_pred eecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHH-------hc-C-CCceeEEeeec-C
Q 020636 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA-------ST-G-PGIRFFQLYVY-K 133 (323)
Q Consensus 64 ~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~-------~~-~-~~~~~~QLy~~-~ 133 (323)
+++|. +.|++.+||+.+ +..| .|+.++.++|....++... .+.+++. +. . ..|+.++|+.. .
T Consensus 8 ~~lgi--ryPii~gpMa~G-iss~----eLVaAvs~AGgLG~lgag~-l~~e~l~~~I~~ir~~lt~~~PfGVNL~~~~~ 79 (418)
T cd04742 8 EDYGL--RYAYVAGAMARG-IASA----ELVVAMGKAGMLGFFGAGG-LPLDEVEQAIERIQAALGNGEPYGVNLIHSPD 79 (418)
T ss_pred HHhCC--CccEECCcccCC-CCCH----HHHHHHHhCCCeeeecCCC-CCHHHHHHHHHHHHHhccCCCCeEEeeecCCC
Confidence 34454 589999999732 3444 7999999999999998643 3454443 32 2 46788888753 3
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEe--cCC-CCCCchHHHHhhccCCC-Cc-ccc--ccccccccCCCccccchhhHHHHhh
Q 020636 134 DRNVVAQLVRRAERAGFKAIALT--VDT-PRLGRREADIKNRFTLP-PF-LTL--KNFQGLDLGKMDEANDSGLAAYVAG 206 (323)
Q Consensus 134 d~~~~~~~~~~a~~~G~~al~it--vd~-p~~g~r~~d~~~~~~~~-~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (323)
+++...+.++...+.|++.+... ++. |.. .+.++ .|+... .+ +.. +.+.... .. +..+.
T Consensus 80 ~~~~e~~~v~l~le~gV~~ve~sa~~~~~p~~-~~~r~--~G~~~~~~g~~~~~~~ViakVs-------r~----evAs~ 145 (418)
T cd04742 80 EPELEEGLVDLFLRHGVRVVEASAFMQLTPAL-VRYRA--KGLRRDADGRVQIANRIIAKVS-------RP----EVAEA 145 (418)
T ss_pred CchhHHHHHHHHHHcCCCEEEeccccCCCcch-hhHHh--cCCcccccccccccceEEEecC-------Ch----hhhhh
Confidence 44444566777788898766533 111 110 11111 011000 00 000 0000000 00 00011
Q ss_pred ccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcC-CCEEEEcC-CCCCCCCCCcchHHHHHHHHH---Hh----
Q 020636 207 QIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAG-AAGIIVSN-HGARQLDYVPATIMALEEVVK---AT---- 277 (323)
Q Consensus 207 ~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~G-ad~i~vs~-~gg~~~~~~~~~~~~l~~i~~---~~---- 277 (323)
. -....-+.++++.+. |+.|.++|+.+.+.| +|.|++.. .||+. +..+++.+++.+.+ .+
T Consensus 146 ~-f~ppp~~~v~~L~~~--------G~it~~eA~~A~~~g~aD~Ivvq~EAGGH~--g~~~~~~Llp~v~~l~d~v~~~~ 214 (418)
T cd04742 146 F-MSPAPERILKKLLAE--------GKITEEQAELARRVPVADDITVEADSGGHT--DNRPLSVLLPTIIRLRDELAARY 214 (418)
T ss_pred h-cCCCCHHHHHHHHHc--------CCCCHHHHHHHHhCCCCCEEEEcccCCCCC--CCccHHhHHHHHHHHHHHHhhcc
Confidence 1 112345667777764 234999999999999 59999863 24443 22345566666554 22
Q ss_pred --cCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 278 --QGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 278 --~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
..++||++.|||.|+.++..|+++||++|++||.|+.+++
T Consensus 215 ~~~~~ipViAAGGI~tg~~vaAA~alGAd~V~~GT~flat~E 256 (418)
T cd04742 215 GYRRPIRVGAAGGIGTPEAAAAAFALGADFIVTGSINQCTVE 256 (418)
T ss_pred ccCCCceEEEECCCCCHHHHHHHHHcCCcEEeeccHHHhCcc
Confidence 1259999999999999999999999999999999988654
No 69
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=99.52 E-value=3.3e-13 Score=128.53 Aligned_cols=232 Identities=17% Similarity=0.154 Sum_probs=145.1
Q ss_pred ceeecCcccccceEECccccccc----CCc-HHHHHHHHHHHHcCCceeecCCCC--------------CC---H---HH
Q 020636 62 NTTVLGFKISMPIMIAPTAMQKM----AHP-EGEYATARAASAAGTIMTLSSWST--------------SS---V---EE 116 (323)
Q Consensus 62 ~t~i~g~~~~~Pi~iaPm~~~~l----~~~-~~e~~~a~aa~~~G~~~~vs~~s~--------------~~---~---ee 116 (323)
..+|.+.++++-|+.|||....- +.+ +.....-+.-++-|+++++++... .+ + .+
T Consensus 6 P~~ig~~~lkNRiv~apm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~r~ 85 (337)
T PRK13523 6 PYTIKDVTLKNRIVMSPMCMYSSENKDGKVTNFHLIHYGTRAAGQVGLVIVEATAVLPEGRISDKDLGIWDDEHIEGLHK 85 (337)
T ss_pred CeeECCEeeecccEecccccccccCCCCCCCHHHHHHHHHHHcCCCeEEEECCeEECccccCCCCceecCCHHHHHHHHH
Confidence 46788899999999999963211 122 234566666677788888776321 01 1 12
Q ss_pred HHhc---CCCceeEEeeecC---------------------------ChHHH-------HHHHHHHHHcCCcEEEEecCC
Q 020636 117 VAST---GPGIRFFQLYVYK---------------------------DRNVV-------AQLVRRAERAGFKAIALTVDT 159 (323)
Q Consensus 117 i~~~---~~~~~~~QLy~~~---------------------------d~~~~-------~~~~~~a~~~G~~al~itvd~ 159 (323)
+.+. .+...++||+... +.+.+ .+..++++++||+++.|+...
T Consensus 86 l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ah 165 (337)
T PRK13523 86 LVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAH 165 (337)
T ss_pred HHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccc
Confidence 2221 2346788884311 11122 223456677899999988652
Q ss_pred CCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEecc------
Q 020636 160 PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV------ 233 (323)
Q Consensus 160 p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i------ 233 (323)
|+ +-+.|--| ..+ ......+.++. ....+..+.|+.||+.++.||.+|..
T Consensus 166 ---Gy----Ll~qFlSp-~~N----------~RtD~yGGsle------nR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~ 221 (337)
T PRK13523 166 ---GY----LINEFLSP-LSN----------KRTDEYGGSPE------NRYRFLREIIDAVKEVWDGPLFVRISASDYHP 221 (337)
T ss_pred ---ch----HHHHhcCC-ccC----------CcCCCCCCCHH------HHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 11 11222111 000 00000011111 12446688999999998889999954
Q ss_pred --CCHHH----HHHHHHcCCCEEEEcCCCCCC--CCC-CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcC-C
Q 020636 234 --LTAED----ARIAVQAGAAGIIVSNHGARQ--LDY-VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-A 303 (323)
Q Consensus 234 --~~~e~----a~~~~~~Gad~i~vs~~gg~~--~~~-~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lG-A 303 (323)
.+.++ ++.+.+.|+|.|.|+...... ... ....++...++++.+ ++||++.|+|++++++.++|+.| |
T Consensus 222 ~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~--~ipVi~~G~i~~~~~a~~~l~~g~~ 299 (337)
T PRK13523 222 GGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHA--NIATGAVGLITSGAQAEEILQNNRA 299 (337)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhc--CCcEEEeCCCCCHHHHHHHHHcCCC
Confidence 25555 467778999999997643211 111 112456677788877 79999999999999999999987 9
Q ss_pred CEEEEccccccCcchh
Q 020636 304 SGIFVSIMPCQCPLTE 319 (323)
Q Consensus 304 d~V~iG~~~~~~~~~~ 319 (323)
|+|++||+++.+|++-
T Consensus 300 D~V~~gR~~iadP~~~ 315 (337)
T PRK13523 300 DLIFIGRELLRNPYFP 315 (337)
T ss_pred ChHHhhHHHHhCccHH
Confidence 9999999999999983
No 70
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.50 E-value=2.5e-12 Score=116.35 Aligned_cols=184 Identities=23% Similarity=0.262 Sum_probs=125.1
Q ss_pred ccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHH-------HHhcCCCceeEEeeecCChHHHHHHHH
Q 020636 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEE-------VASTGPGIRFFQLYVYKDRNVVAQLVR 143 (323)
Q Consensus 71 ~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~ee-------i~~~~~~~~~~QLy~~~d~~~~~~~~~ 143 (323)
..|+++|||.+. .+ ..+++++.++|....++... .+.++ +.+..+.+..+++.....+....+.++
T Consensus 2 ~~pi~~a~m~g~--~~----~~~~~~~~~~G~ig~i~~~~-~~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~ 74 (236)
T cd04730 2 RYPIIQAPMAGV--ST----PELAAAVSNAGGLGFIGAGY-LTPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLE 74 (236)
T ss_pred CCCEECCCCCCC--CC----HHHHHHHHhCCCccccCCCC-CCHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHH
Confidence 479999999774 33 47999999998655554321 12222 222222345577764321123556788
Q ss_pred HHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHh
Q 020636 144 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTI 223 (323)
Q Consensus 144 ~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~ 223 (323)
.+.++|++.+.+.-+. ..+.++++++
T Consensus 75 ~~~~~g~d~v~l~~~~-----------------------------------------------------~~~~~~~~~~- 100 (236)
T cd04730 75 VALEEGVPVVSFSFGP-----------------------------------------------------PAEVVERLKA- 100 (236)
T ss_pred HHHhCCCCEEEEcCCC-----------------------------------------------------CHHHHHHHHH-
Confidence 8889999988764210 1123344443
Q ss_pred cCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCC--CCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHc
Q 020636 224 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG--ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 301 (323)
Q Consensus 224 ~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~g--g~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~l 301 (323)
.+++++++ +.+.++++.+.+.|+|+|.+.+.+ |.........++.+.++++.+ ++||++.|||++++|+.+++..
T Consensus 101 ~~i~~i~~-v~~~~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~--~~Pvi~~GGI~~~~~v~~~l~~ 177 (236)
T cd04730 101 AGIKVIPT-VTSVEEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV--DIPVIAAGGIADGRGIAAALAL 177 (236)
T ss_pred cCCEEEEe-CCCHHHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh--CCCEEEECCCCCHHHHHHHHHc
Confidence 35666654 567788999999999999986542 221111134678888888877 7999999999999999999999
Q ss_pred CCCEEEEccccccCcch
Q 020636 302 GASGIFVSIMPCQCPLT 318 (323)
Q Consensus 302 GAd~V~iG~~~~~~~~~ 318 (323)
|||+|++|+.++.++..
T Consensus 178 GadgV~vgS~l~~~~e~ 194 (236)
T cd04730 178 GADGVQMGTRFLATEES 194 (236)
T ss_pred CCcEEEEchhhhcCccc
Confidence 99999999999887654
No 71
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.48 E-value=1.1e-12 Score=124.38 Aligned_cols=109 Identities=22% Similarity=0.169 Sum_probs=85.9
Q ss_pred CccCHHHHHHHHHhc--CCCEEEecc--------CCHHH----HHHHHHcCCCEEEEcCCCCCCCCC--------CcchH
Q 020636 210 RSLSWKDVKWLQTIT--KLPILVKGV--------LTAED----ARIAVQAGAAGIIVSNHGARQLDY--------VPATI 267 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~--~~pv~vK~i--------~~~e~----a~~~~~~Gad~i~vs~~gg~~~~~--------~~~~~ 267 (323)
..+..+.++.+|+.+ +.||.+|.. .+.++ ++.+.+.|+|+|.+++....+... ....+
T Consensus 191 ~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~ 270 (327)
T cd02803 191 ARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFL 270 (327)
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhH
Confidence 345678899999998 679999965 23444 678889999999998754322111 12345
Q ss_pred HHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHc-CCCEEEEccccccCcchhh
Q 020636 268 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 268 ~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~l-GAd~V~iG~~~~~~~~~~~ 320 (323)
+.+..+++.+ ++||+++|||++++++.++++. |||.|++||+++.+|++-+
T Consensus 271 ~~~~~ir~~~--~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~ladP~l~~ 322 (327)
T cd02803 271 ELAEKIKKAV--KIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLADPDLPN 322 (327)
T ss_pred HHHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHhCccHHH
Confidence 6778888887 7999999999999999999998 7999999999999998743
No 72
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=99.45 E-value=9.3e-12 Score=121.33 Aligned_cols=221 Identities=19% Similarity=0.167 Sum_probs=131.5
Q ss_pred eecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHh-------cCC-Cc-eeEEeeecC-
Q 020636 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS-------TGP-GI-RFFQLYVYK- 133 (323)
Q Consensus 64 ~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~-------~~~-~~-~~~QLy~~~- 133 (323)
+++|. +.|++.+||+. ++.+| .|+.+..++|....++... .+++++.+ ..+ ++ +.++|+...
T Consensus 13 ~~lgi--ryPiiqgpMa~-GiSs~----eLVaAVs~AGgLG~lgag~-l~~e~l~~~I~~ir~~~~~~p~fGVNL~~~~~ 84 (444)
T TIGR02814 13 EDYGV--RYAYVAGAMAN-GIASA----ELVIAMGRAGILGFFGAGG-LPLEEVEQAIHRIQQALPGGPAYGVNLIHSPS 84 (444)
T ss_pred HHhCC--CCcEECccccC-CCCCH----HHHHHHHhCCceeeeCCCC-CCHHHHHHHHHHHHHhcCCCCceEEEecccCC
Confidence 34454 58999999973 23444 7999999999999998643 45555432 223 36 888887543
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEe--cC-CCCCCchHHHHhhccCCCC--ccccc--cccccccCCCccccchhhHHHHhh
Q 020636 134 DRNVVAQLVRRAERAGFKAIALT--VD-TPRLGRREADIKNRFTLPP--FLTLK--NFQGLDLGKMDEANDSGLAAYVAG 206 (323)
Q Consensus 134 d~~~~~~~~~~a~~~G~~al~it--vd-~p~~g~r~~d~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 206 (323)
+++...++++.+.+.|++.+... ++ +|.. .+.+. .|+.... .+... .+... +. .+..+.
T Consensus 85 ~~~~e~~~v~l~l~~~V~~veasa~~~~~p~~-v~~r~--~G~~~~~~g~~~~~~~ViakV-------sr----~~vAs~ 150 (444)
T TIGR02814 85 DPALEWGLVDLLLRHGVRIVEASAFMQLTPAL-VRYRA--KGLHRDADGRVVIRNRLIAKV-------SR----PEVAEA 150 (444)
T ss_pred CcccHHHHHHHHHHcCCCEEEeccccCCCcch-hhhhh--ccccccccccccccceEEEec-------CC----HHHHHH
Confidence 33333456666677888876543 11 1111 11111 0010000 00000 00000 00 001111
Q ss_pred ccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcC-CCEEEEcC-CCCCCCCCCcchHHHHHHHHH---Hh----
Q 020636 207 QIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAG-AAGIIVSN-HGARQLDYVPATIMALEEVVK---AT---- 277 (323)
Q Consensus 207 ~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~G-ad~i~vs~-~gg~~~~~~~~~~~~l~~i~~---~~---- 277 (323)
...| ..-+.++.+.+. |+.|+++|+.+.+.| +|.|++.. .||+. +..+++.+++.+.+ .+
T Consensus 151 f~~p-~p~~~v~~L~~~--------G~it~eEA~~a~~~g~aD~Ivve~EAGGHt--g~~~~~~Llp~i~~lrd~v~~~~ 219 (444)
T TIGR02814 151 FMSP-APAHILQKLLAE--------GRITREEAELARRVPVADDICVEADSGGHT--DNRPLVVLLPAIIRLRDTLMRRY 219 (444)
T ss_pred hcCC-CcHHHHHHHHHc--------CCCCHHHHHHHHhCCCCcEEEEeccCCCCC--CCCcHHHHHHHHHHHHHHHhhcc
Confidence 1111 224456666554 334999999999999 48888852 24543 33456677777753 33
Q ss_pred --cCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 278 --QGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 278 --~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
..++||++.|||.|+.++..++++|||+|++||.|+.+++
T Consensus 220 ~y~~~VpViAAGGI~t~~~vaAAlaLGAdgV~~GT~flat~E 261 (444)
T TIGR02814 220 GYRKPIRVGAAGGIGTPEAAAAAFMLGADFIVTGSVNQCTVE 261 (444)
T ss_pred cCCCCceEEEeCCCCCHHHHHHHHHcCCcEEEeccHHHhCcc
Confidence 1268999999999999999999999999999999988654
No 73
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=99.43 E-value=1.1e-11 Score=118.41 Aligned_cols=232 Identities=16% Similarity=0.205 Sum_probs=140.1
Q ss_pred ceeecCcccccceEECcccccccC---Cc-HHHHHHHHHHHHcCCceeecCCCCC--------------C------HHHH
Q 020636 62 NTTVLGFKISMPIMIAPTAMQKMA---HP-EGEYATARAASAAGTIMTLSSWSTS--------------S------VEEV 117 (323)
Q Consensus 62 ~t~i~g~~~~~Pi~iaPm~~~~l~---~~-~~e~~~a~aa~~~G~~~~vs~~s~~--------------~------~eei 117 (323)
..+|.+.++++-|+.|||... +. .| +..+..-+.-++-|+++++++.... + +.++
T Consensus 4 P~~i~~~~lkNRiv~apm~~~-~~~~G~~t~~~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~l 82 (343)
T cd04734 4 PLQLGHLTLRNRIVSTAHATN-YAEDGLPSERYIAYHEERARGGAGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFRRL 82 (343)
T ss_pred CeeeCCEEecCCeEECCcccc-cccCCCCCHHHHHHHHHHHhCCCCEEEEeeeeeCCcccCCCCccccCCHHHHHHHHHH
Confidence 357888999999999999643 22 11 1234666666667888887763210 1 1112
Q ss_pred Hh---cCCCceeEEeeec----------------C--------------Ch----HHH---HHHHHHHHHcCCcEEEEec
Q 020636 118 AS---TGPGIRFFQLYVY----------------K--------------DR----NVV---AQLVRRAERAGFKAIALTV 157 (323)
Q Consensus 118 ~~---~~~~~~~~QLy~~----------------~--------------d~----~~~---~~~~~~a~~~G~~al~itv 157 (323)
.+ ..+...++||... . +. +.+ .+.+++|+++||+++.|+.
T Consensus 83 ~~~vh~~g~~~~~Ql~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ 162 (343)
T cd04734 83 AEAVHAHGAVIMIQLTHLGRRGDGDGSWLPPLAPSAVPEPRHRAVPKAMEEEDIEEIIAAFADAARRCQAGGLDGVELQA 162 (343)
T ss_pred HHHHHhcCCeEEEeccCCCcCcCcccCCCcccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 22 1234678887421 0 01 111 2334566778999999886
Q ss_pred CCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCC--EEEecc--
Q 020636 158 DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLP--ILVKGV-- 233 (323)
Q Consensus 158 d~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~p--v~vK~i-- 233 (323)
.. |+ +-+.|--| ..+-+ +...|.++ +.+..+..+.++.+|+.++.+ |.+|..
T Consensus 163 ah---Gy----Ll~qFlsp-~~N~R----------tD~yGGsl------enR~r~~~eiv~~ir~~vg~~~~v~iRl~~~ 218 (343)
T cd04734 163 AH---GH----LIDQFLSP-LTNRR----------TDEYGGSL------ENRMRFLLEVLAAVRAAVGPDFIVGIRISGD 218 (343)
T ss_pred cc---ch----HHHHhhCC-CcCCC----------CCcCCCCH------HHHhHHHHHHHHHHHHHcCCCCeEEEEeehh
Confidence 21 11 11122111 11100 01111111 123456788999999998644 455532
Q ss_pred ------CCHHH----HHHHHHcC-CCEEEEcCCCCCCC----------CCC-cchHHHHHHHHHHhcCCCeEEEecCCCC
Q 020636 234 ------LTAED----ARIAVQAG-AAGIIVSNHGARQL----------DYV-PATIMALEEVVKATQGRIPVFLDGGVRR 291 (323)
Q Consensus 234 ------~~~e~----a~~~~~~G-ad~i~vs~~gg~~~----------~~~-~~~~~~l~~i~~~~~~~~pvia~GGI~~ 291 (323)
.+.++ ++.+.++| +|.|.||....... ... ...++....+++.+ ++|||++|||++
T Consensus 219 ~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~ipvi~~G~i~~ 296 (343)
T cd04734 219 EDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAV--DLPVFHAGRIRD 296 (343)
T ss_pred hccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHc--CCCEEeeCCCCC
Confidence 23444 56777898 89999964221110 011 11356777888887 799999999999
Q ss_pred HHHHHHHHHcC-CCEEEEccccccCcchhh
Q 020636 292 GTDVFKALALG-ASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 292 ~~di~kal~lG-Ad~V~iG~~~~~~~~~~~ 320 (323)
++++.++++.| ||+|++||+++.+|++=+
T Consensus 297 ~~~~~~~l~~~~~D~V~~gR~~ladP~l~~ 326 (343)
T cd04734 297 PAEAEQALAAGHADMVGMTRAHIADPHLVA 326 (343)
T ss_pred HHHHHHHHHcCCCCeeeecHHhHhCccHHH
Confidence 99999999976 999999999999998743
No 74
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=99.39 E-value=2.7e-11 Score=115.60 Aligned_cols=108 Identities=19% Similarity=0.142 Sum_probs=84.5
Q ss_pred CCccCHHHHHHHHHhc--CCCEEEecc--------CCHHH----HHHHHHcCCCEEEEcCCCCC--CC-CC-CcchHHHH
Q 020636 209 DRSLSWKDVKWLQTIT--KLPILVKGV--------LTAED----ARIAVQAGAAGIIVSNHGAR--QL-DY-VPATIMAL 270 (323)
Q Consensus 209 ~~~~~~~~i~~i~~~~--~~pv~vK~i--------~~~e~----a~~~~~~Gad~i~vs~~gg~--~~-~~-~~~~~~~l 270 (323)
++.+..+.++.+|+.+ +.||.+|.. .+.++ ++.+.+.|+|.|.++.++.. +. .. ....++.+
T Consensus 203 r~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~ 282 (336)
T cd02932 203 RMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFA 282 (336)
T ss_pred HhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHH
Confidence 4567788999999998 689999933 34554 45667899999999754322 11 11 11234677
Q ss_pred HHHHHHhcCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEccccccCcch
Q 020636 271 EEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFVSIMPCQCPLT 318 (323)
Q Consensus 271 ~~i~~~~~~~~pvia~GGI~~~~di~kal~lG-Ad~V~iG~~~~~~~~~ 318 (323)
.++++.+ ++||++.|||.+++++.++|+.| ||+|++||+++.+|++
T Consensus 283 ~~ir~~~--~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~dP~~ 329 (336)
T cd02932 283 ERIRQEA--GIPVIAVGLITDPEQAEAILESGRADLVALGRELLRNPYW 329 (336)
T ss_pred HHHHhhC--CCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHhCccH
Confidence 7888877 89999999999999999999998 9999999999999987
No 75
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=99.38 E-value=3.1e-11 Score=108.42 Aligned_cols=177 Identities=20% Similarity=0.142 Sum_probs=115.8
Q ss_pred HHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEEeeecCC-----h--HHHHHHHHHHHHcCCcEEEEecCCCCCC
Q 020636 91 YATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKD-----R--NVVAQLVRRAERAGFKAIALTVDTPRLG 163 (323)
Q Consensus 91 ~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QLy~~~d-----~--~~~~~~~~~a~~~G~~al~itvd~p~~g 163 (323)
..+++++.+.|+..+... +...++++++...-|....+| +| . ....+.++.+.++|++.++ +|.+...
T Consensus 26 ~~~a~a~~~~G~~~~~~~-~~~~i~~i~~~~~~Pil~~~~--~d~~~~~~~~~~~~~~v~~a~~aGad~I~--~d~~~~~ 100 (221)
T PRK01130 26 AAMALAAVQGGAVGIRAN-GVEDIKAIRAVVDVPIIGIIK--RDYPDSEVYITPTLKEVDALAAAGADIIA--LDATLRP 100 (221)
T ss_pred HHHHHHHHHCCCeEEEcC-CHHHHHHHHHhCCCCEEEEEe--cCCCCCCceECCCHHHHHHHHHcCCCEEE--EeCCCCC
Confidence 589999999998655431 222334444433334432223 11 0 0023457888899999554 3443210
Q ss_pred chHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHH
Q 020636 164 RREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAV 243 (323)
Q Consensus 164 ~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~ 243 (323)
.| +.....+.++.+++..++|++ ..+.+.++++.+.
T Consensus 101 -----------~p--------------------------------~~~~~~~~i~~~~~~~~i~vi-~~v~t~ee~~~a~ 136 (221)
T PRK01130 101 -----------RP--------------------------------DGETLAELVKRIKEYPGQLLM-ADCSTLEEGLAAQ 136 (221)
T ss_pred -----------CC--------------------------------CCCCHHHHHHHHHhCCCCeEE-EeCCCHHHHHHHH
Confidence 00 001123456667664455554 4678999999999
Q ss_pred HcCCCEEEEcCCCCCCC--CCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcch
Q 020636 244 QAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 244 ~~Gad~i~vs~~gg~~~--~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~ 318 (323)
+.|+|+|.++++|.+.. ......++.++++++.+ ++||++.|||++++|+.+++++|||+|++|+.++...+.
T Consensus 137 ~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~--~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~~~~~ 211 (221)
T PRK01130 137 KLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV--GCPVIAEGRINTPEQAKKALELGAHAVVVGGAITRPEEI 211 (221)
T ss_pred HcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcCCHHH
Confidence 99999998765543221 22344578889998887 799999999999999999999999999999998875543
No 76
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=99.37 E-value=2.1e-11 Score=118.13 Aligned_cols=109 Identities=16% Similarity=0.149 Sum_probs=82.7
Q ss_pred CCccCHHHHHHHHHhc--CCCEEEeccC----------------------CHHH----HHHHHHcCCCEEEEcCCCCCCC
Q 020636 209 DRSLSWKDVKWLQTIT--KLPILVKGVL----------------------TAED----ARIAVQAGAAGIIVSNHGARQL 260 (323)
Q Consensus 209 ~~~~~~~~i~~i~~~~--~~pv~vK~i~----------------------~~e~----a~~~~~~Gad~i~vs~~gg~~~ 260 (323)
...+..+.|+.+|+.+ +.||.+|... +.++ ++.+.++|+|.|.|+.....+.
T Consensus 200 R~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~ 279 (382)
T cd02931 200 RLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAW 279 (382)
T ss_pred HhHHHHHHHHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCccc
Confidence 3557789999999998 4689998541 3344 5677789999999975332111
Q ss_pred C------CCc-c-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEccccccCcchh
Q 020636 261 D------YVP-A-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 261 ~------~~~-~-~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lG-Ad~V~iG~~~~~~~~~~ 319 (323)
. ..+ . .++....+++.+ ++||+++|||++++++.++|+.| ||+|++||+|+.+|++-
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~ik~~~--~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~ 345 (382)
T cd02931 280 YWNHPPMYQKKGMYLPYCKALKEVV--DVPVIMAGRMEDPELASEAINEGIADMISLGRPLLADPDVV 345 (382)
T ss_pred ccccCCccCCcchhHHHHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHhCccHH
Confidence 1 111 1 135667778877 79999999999999999999987 99999999999999874
No 77
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.37 E-value=4.3e-11 Score=103.58 Aligned_cols=185 Identities=23% Similarity=0.226 Sum_probs=121.2
Q ss_pred eEECcccccccCCcHHHHHHHHHHHHcCCceeec-CCCC-------CC---HHHHHhcCCCceeEEeeecCChHHHHHHH
Q 020636 74 IMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST-------SS---VEEVASTGPGIRFFQLYVYKDRNVVAQLV 142 (323)
Q Consensus 74 i~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~s~-------~~---~eei~~~~~~~~~~QLy~~~d~~~~~~~~ 142 (323)
|++++|..+.. +....+++.+.+.|+.++.. +... .. ++.+......+.++|++.....+......
T Consensus 1 ~~~~~~~~~~~---~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 77 (200)
T cd04722 1 VILALLAGGPS---GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAA 77 (200)
T ss_pred CeeeccccCch---HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHH
Confidence 45677655311 34468889999988755533 2111 11 34444444567899998644443333334
Q ss_pred HHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHH
Q 020636 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQT 222 (323)
Q Consensus 143 ~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 222 (323)
++++++|++.+.++..++.. +....+.++++++
T Consensus 78 ~~~~~~g~d~v~l~~~~~~~-----------------------------------------------~~~~~~~~~~i~~ 110 (200)
T cd04722 78 AAARAAGADGVEIHGAVGYL-----------------------------------------------AREDLELIRELRE 110 (200)
T ss_pred HHHHHcCCCEEEEeccCCcH-----------------------------------------------HHHHHHHHHHHHH
Confidence 68889999999888665431 1123567888888
Q ss_pred hc-CCCEEEeccCCHHHHHH-HHHcCCCEEEEcCCCCCCCCCCcc--hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHH
Q 020636 223 IT-KLPILVKGVLTAEDARI-AVQAGAAGIIVSNHGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 298 (323)
Q Consensus 223 ~~-~~pv~vK~i~~~e~a~~-~~~~Gad~i~vs~~gg~~~~~~~~--~~~~l~~i~~~~~~~~pvia~GGI~~~~di~ka 298 (323)
.+ +.|+++|.....+.... +.+.|+|.|.++++.+........ ....+..+.... ++||+++|||.+++++.++
T Consensus 111 ~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pi~~~GGi~~~~~~~~~ 188 (200)
T cd04722 111 AVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGS--KVPVIAGGGINDPEDAAEA 188 (200)
T ss_pred hcCCceEEEEECCCCccchhhHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcC--CCCEEEECCCCCHHHHHHH
Confidence 87 78999996543322222 688999999998765433222221 223444444433 7999999999999999999
Q ss_pred HHcCCCEEEEcc
Q 020636 299 LALGASGIFVSI 310 (323)
Q Consensus 299 l~lGAd~V~iG~ 310 (323)
+.+|||+|++||
T Consensus 189 ~~~Gad~v~vgs 200 (200)
T cd04722 189 LALGADGVIVGS 200 (200)
T ss_pred HHhCCCEEEecC
Confidence 999999999996
No 78
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.35 E-value=1.6e-11 Score=112.57 Aligned_cols=269 Identities=22% Similarity=0.303 Sum_probs=145.6
Q ss_pred chHHHHHhHHhhcccccccccccCCCCCccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCcee-ecCCC
Q 020636 32 DQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LSSWS 110 (323)
Q Consensus 32 ~e~t~~~N~~~~~~i~l~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~-vs~~s 110 (323)
-|.++|--.. +..|.|.||.=.. .+.++.++++|.++++||++|. |+ |.++| ......+.|..++ +++.+
T Consensus 57 ~E~sHrlAv~-aas~gl~Pr~~~~-d~~~L~~k~~g~~f~NPiglAA-Gf----dk~~e--aidgL~~~gfG~ieigSvT 127 (398)
T KOG1436|consen 57 PEFSHRLAVL-AASWGLLPRDRVA-DDASLETKVLGRKFSNPIGLAA-GF----DKNAE--AIDGLANSGFGFIEIGSVT 127 (398)
T ss_pred HHHHHHHHHH-HHHhCCCchhccC-CccchhhHHhhhhccCchhhhh-cc----CcchH--HHHHHHhCCCceEEecccc
Confidence 3455555443 3678899985433 3557888999999999999997 33 44343 4455556787766 55543
Q ss_pred CCCHHHHHhcCCCceeEEe---------eecCChHHHHHHHHHH---HHcC---C-cEEEEecCCCCC-CchHHHHhhcc
Q 020636 111 TSSVEEVASTGPGIRFFQL---------YVYKDRNVVAQLVRRA---ERAG---F-KAIALTVDTPRL-GRREADIKNRF 173 (323)
Q Consensus 111 ~~~~eei~~~~~~~~~~QL---------y~~~d~~~~~~~~~~a---~~~G---~-~al~itvd~p~~-g~r~~d~~~~~ 173 (323)
. .++ +-+|.|+.|.| |.+.+.+. ...++|+ +.+. . ..+.|+++..-. ..-..|+-.+.
T Consensus 128 p--~pq--eGNPkPRvfrl~ed~~vINryGfns~Gi-~~vl~rl~~~r~~~~~e~~~~lGVnlgknk~s~d~~~dy~~gV 202 (398)
T KOG1436|consen 128 P--KPQ--EGNPKPRVFRLPEDLAVINRYGFNSEGI-DAVLQRLRAKRQAKYPEAPAKLGVNLGKNKTSEDAILDYVEGV 202 (398)
T ss_pred c--CCC--CCCCCCceEecccccchhhccCCCcccH-HHHHHHHHHHHHhcCCCccccceeeeccccCCcchHHHHHHHh
Confidence 3 222 33455666655 22222211 1222222 1111 1 112233322110 11122222221
Q ss_pred CCCCccccccccccccCCCccccchhhHHHHhhccCCccC--HHHHHHHHHh----cCCCEEEeccCC-----HHH-HHH
Q 020636 174 TLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS--WKDVKWLQTI----TKLPILVKGVLT-----AED-ARI 241 (323)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~i~~~----~~~pv~vK~i~~-----~e~-a~~ 241 (323)
.. ...+.++..-+++..+..++.. + +.+.++. ...+..-+.. .+.|+.+|...+ .+| +..
T Consensus 203 ~~-----~g~~adylviNvSsPNtpGlr~-l--q~k~~L~~ll~~v~~a~~~~~~~~~~pvl~kiapDL~~~el~dia~v 274 (398)
T KOG1436|consen 203 RV-----FGPFADYLVINVSSPNTPGLRS-L--QKKSDLRKLLTKVVQARDKLPLGKKPPVLVKIAPDLSEKELKDIALV 274 (398)
T ss_pred hh-----cccccceEEEeccCCCCcchhh-h--hhHHHHHHHHHHHHHHHhccccCCCCceEEEeccchhHHHHHHHHHH
Confidence 10 0001111111122223333221 1 1122221 1111112222 145899996532 222 556
Q ss_pred HHHcCCCEEEEcCCCC-CC--------------CCC---CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCC
Q 020636 242 AVQAGAAGIIVSNHGA-RQ--------------LDY---VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 303 (323)
Q Consensus 242 ~~~~Gad~i~vs~~gg-~~--------------~~~---~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGA 303 (323)
+.+.+.|+++++|..= |. +.+ .+.+.+.++++...+.++||||..|||.||.|+.+-+.+||
T Consensus 275 ~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~lt~g~IpiIG~GGV~SG~DA~EkiraGA 354 (398)
T KOG1436|consen 275 VKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTLTRGKIPIIGCGGVSSGKDAYEKIRAGA 354 (398)
T ss_pred HHHhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHHHHHhccCCCceEeecCccccHhHHHHHhcCc
Confidence 6789999999988531 10 111 13356788888888888999999999999999999999999
Q ss_pred CEEEEccccc--cCcchhhhc
Q 020636 304 SGIFVSIMPC--QCPLTEKIN 322 (323)
Q Consensus 304 d~V~iG~~~~--~~~~~~~~~ 322 (323)
+.|+++++|. +.+.++||-
T Consensus 355 SlvQlyTal~yeGp~i~~kIk 375 (398)
T KOG1436|consen 355 SLVQLYTALVYEGPAIIEKIK 375 (398)
T ss_pred hHHHHHHHHhhcCchhHHHHH
Confidence 9999999884 466666663
No 79
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=99.35 E-value=6.3e-11 Score=106.34 Aligned_cols=104 Identities=22% Similarity=0.193 Sum_probs=83.8
Q ss_pred HHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCC--CCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 020636 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~ 291 (323)
.+.++++++..+.|+++ .+.+.++++.+.+.|+|+|.+.++|-+. .....+.++.++++++.+ ++||++.|||++
T Consensus 112 ~~~i~~~~~~g~~~iiv-~v~t~~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~--~ipvia~GGI~~ 188 (219)
T cd04729 112 AELIKRIHEEYNCLLMA-DISTLEEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL--GIPVIAEGRINS 188 (219)
T ss_pred HHHHHHHHHHhCCeEEE-ECCCHHHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhc--CCCEEEeCCCCC
Confidence 45677777765566665 5788999999999999999776555322 122345678899998877 799999999999
Q ss_pred HHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 292 GTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 292 ~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
++|+.+++++|||+|++|+.++...+.++
T Consensus 189 ~~~~~~~l~~GadgV~vGsal~~~~~~~~ 217 (219)
T cd04729 189 PEQAAKALELGADAVVVGSAITRPEHITG 217 (219)
T ss_pred HHHHHHHHHCCCCEEEEchHHhChHhHhh
Confidence 99999999999999999999988877654
No 80
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.33 E-value=7.6e-11 Score=113.21 Aligned_cols=108 Identities=17% Similarity=0.120 Sum_probs=80.5
Q ss_pred CccCHHHHHHHHHhc--CCCEEEecc------------CCHHH----HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHH
Q 020636 210 RSLSWKDVKWLQTIT--KLPILVKGV------------LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALE 271 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~--~~pv~vK~i------------~~~e~----a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~ 271 (323)
..+..+.|+.+|+.+ +.||.+|.. .+.++ ++.+.+.|+|.|.++...-..............
T Consensus 194 ~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~~~~~~~~~~ 273 (361)
T cd04747 194 SRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRRFWEPEFEGSELNLAG 273 (361)
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCccCCCcCccchhHHH
Confidence 456788999999998 478999854 23444 445678999999887632111111122345556
Q ss_pred HHHHHhcCCCeEEEecCC------------------CCHHHHHHHHHcC-CCEEEEccccccCcchh
Q 020636 272 EVVKATQGRIPVFLDGGV------------------RRGTDVFKALALG-ASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 272 ~i~~~~~~~~pvia~GGI------------------~~~~di~kal~lG-Ad~V~iG~~~~~~~~~~ 319 (323)
.+++.+ ++||++.|+| ++++++.++|+.| ||+|++||+++.+|++-
T Consensus 274 ~~k~~~--~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~ 338 (361)
T cd04747 274 WTKKLT--GLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLSDPAWV 338 (361)
T ss_pred HHHHHc--CCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHhCcHHH
Confidence 677777 7999999999 6999999999976 99999999999999873
No 81
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.33 E-value=3e-11 Score=116.01 Aligned_cols=111 Identities=17% Similarity=0.119 Sum_probs=81.6
Q ss_pred CccCHHHHHHHHHhcC------CCEEEecc--------CCHHH----HHHHHHcCCCEEEEcCCCCCCC--CCCcchHHH
Q 020636 210 RSLSWKDVKWLQTITK------LPILVKGV--------LTAED----ARIAVQAGAAGIIVSNHGARQL--DYVPATIMA 269 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~~------~pv~vK~i--------~~~e~----a~~~~~~Gad~i~vs~~gg~~~--~~~~~~~~~ 269 (323)
..+..|.++.+|+.++ .||.+|.. .+.++ ++.+.++|+|+|.|+.++.+.. .........
T Consensus 194 ~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~ 273 (353)
T cd04735 194 MRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTI 273 (353)
T ss_pred HHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHH
Confidence 4567889999999875 35666532 23444 5777899999999986433211 111223455
Q ss_pred HHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 270 LEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 270 l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
+..+++.+..++|||+.|||++++++.++++.|||+|++||+++.+|++-+
T Consensus 274 ~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~liadPdl~~ 324 (353)
T cd04735 274 MELVKERIAGRLPLIAVGSINTPDDALEALETGADLVAIGRGLLVDPDWVE 324 (353)
T ss_pred HHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHHhCccHHH
Confidence 566666654479999999999999999999999999999999999998743
No 82
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=99.31 E-value=4.9e-11 Score=102.97 Aligned_cols=93 Identities=22% Similarity=0.232 Sum_probs=74.5
Q ss_pred HHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCC--CCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 020636 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~ 291 (323)
.+.++++|+.. -+++..+.|.||++.+.++|+|.|....+|++. .. ..|+++++.++.+. .+|||+.|+|++
T Consensus 82 ~~li~~i~~~~--~l~MADist~ee~~~A~~~G~D~I~TTLsGYT~~t~~-~~pD~~lv~~l~~~---~~pvIaEGri~t 155 (192)
T PF04131_consen 82 EELIREIKEKY--QLVMADISTLEEAINAAELGFDIIGTTLSGYTPYTKG-DGPDFELVRELVQA---DVPVIAEGRIHT 155 (192)
T ss_dssp HHHHHHHHHCT--SEEEEE-SSHHHHHHHHHTT-SEEE-TTTTSSTTSTT-SSHHHHHHHHHHHT---TSEEEEESS--S
T ss_pred HHHHHHHHHhC--cEEeeecCCHHHHHHHHHcCCCEEEcccccCCCCCCC-CCCCHHHHHHHHhC---CCcEeecCCCCC
Confidence 45689999986 688999999999999999999999887766543 22 66789999998863 799999999999
Q ss_pred HHHHHHHHHcCCCEEEEcccc
Q 020636 292 GTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 292 ~~di~kal~lGAd~V~iG~~~ 312 (323)
++++.++|.+||++|.+|++.
T Consensus 156 pe~a~~al~~GA~aVVVGsAI 176 (192)
T PF04131_consen 156 PEQAAKALELGAHAVVVGSAI 176 (192)
T ss_dssp HHHHHHHHHTT-SEEEE-HHH
T ss_pred HHHHHHHHhcCCeEEEECccc
Confidence 999999999999999999876
No 83
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=99.30 E-value=3.5e-11 Score=117.46 Aligned_cols=220 Identities=20% Similarity=0.217 Sum_probs=133.8
Q ss_pred cccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEEeeecCChHHHHHHHHHHHH
Q 020636 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAER 147 (323)
Q Consensus 68 ~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~ 147 (323)
..+..||.++.|+++.+ .++...++|+++.+.|.-+..++.. ...++. + .....+.|+-. .-.....+.+.
T Consensus 163 ~~i~~~~~~~aMS~GAl-S~eA~~alA~a~~~~G~~sntGEGG-e~~~~~-~-~~~s~I~QvaS-GRFGV~~~yL~---- 233 (485)
T COG0069 163 LELKKRFVTGAMSFGAL-SKEAHEALARAMNRIGTKSNTGEGG-EDPERY-E-DGRSAIKQVAS-GRFGVTPEYLA---- 233 (485)
T ss_pred ceeeecccccccCCccc-cHHHHHHHHHHHHHhcCcccCCCCC-CCHHHh-c-cccceEEEecc-ccCccCHHHhC----
Confidence 56778999999999876 5668889999999999998888865 333333 1 22446778632 23333333332
Q ss_pred cCCcEEEEecCCCCCCchHHHHhhccCCC-Cccccc--cccccccCCCccccchhhHHHHhhccCCcc-CHHH----HHH
Q 020636 148 AGFKAIALTVDTPRLGRREADIKNRFTLP-PFLTLK--NFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SWKD----VKW 219 (323)
Q Consensus 148 ~G~~al~itvd~p~~g~r~~d~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----i~~ 219 (323)
.++++-|-+..-. +.- .+=.+| .|++.. .+...+.+ .+ .+++..+++. +.++ |..
T Consensus 234 -~a~~ieIKiaQGA---KPG---eGG~Lpg~KV~~~IA~~R~~~pG-------~~---~ISP~pHHDiysieDLaqlI~d 296 (485)
T COG0069 234 -NADAIEIKIAQGA---KPG---EGGQLPGEKVTPEIAKTRGSPPG-------VG---LISPPPHHDIYSIEDLAQLIKD 296 (485)
T ss_pred -ccceEEEEeccCC---CCC---CCCCCCCccCCHHHHHhcCCCCC-------CC---CcCCCCcccccCHHHHHHHHHH
Confidence 3445555443211 000 000122 122210 00011111 00 1222233333 4544 455
Q ss_pred HHHhc-CCCEEEeccC--CHHHHHH-HHHcCCCEEEEcCCCC-CC------C-CCCcchHHHHHHHHHHh-----cCCCe
Q 020636 220 LQTIT-KLPILVKGVL--TAEDARI-AVQAGAAGIIVSNHGA-RQ------L-DYVPATIMALEEVVKAT-----QGRIP 282 (323)
Q Consensus 220 i~~~~-~~pv~vK~i~--~~e~a~~-~~~~Gad~i~vs~~gg-~~------~-~~~~~~~~~l~~i~~~~-----~~~~p 282 (323)
+|+.. ..+|.||.+. ..+.+.. ..+++||.|+|++|.| +. . ..+.|....|++..+.+ ++++.
T Consensus 297 Lk~~~~~~~I~VKlva~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~glRd~v~ 376 (485)
T COG0069 297 LKEANPWAKISVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLNGLRDKVK 376 (485)
T ss_pred HHhcCCCCeEEEEEecccchHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHcCCcceeE
Confidence 55554 2579999773 3455444 7899999999999854 32 1 23445555677776655 46799
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEccccc
Q 020636 283 VFLDGGVRRGTDVFKALALGASGIFVSIMPC 313 (323)
Q Consensus 283 via~GGI~~~~di~kal~lGAd~V~iG~~~~ 313 (323)
|+++||++|+.|++||++||||.|.+||+.+
T Consensus 377 l~~~Ggl~Tg~DVaka~aLGAd~v~~gTa~l 407 (485)
T COG0069 377 LIADGGLRTGADVAKAAALGADAVGFGTAAL 407 (485)
T ss_pred EEecCCccCHHHHHHHHHhCcchhhhchHHH
Confidence 9999999999999999999999999999764
No 84
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=99.29 E-value=1.5e-10 Score=111.19 Aligned_cols=233 Identities=16% Similarity=0.119 Sum_probs=139.4
Q ss_pred ceeecCcccccceEECcccc--cccCCc-HHHHHHHHHHHHcCCceeecCCCCC--------------C---H---HHHH
Q 020636 62 NTTVLGFKISMPIMIAPTAM--QKMAHP-EGEYATARAASAAGTIMTLSSWSTS--------------S---V---EEVA 118 (323)
Q Consensus 62 ~t~i~g~~~~~Pi~iaPm~~--~~l~~~-~~e~~~a~aa~~~G~~~~vs~~s~~--------------~---~---eei~ 118 (323)
..+|.+.++++-|+.|||.. ..-..+ +..+..-+.-++-|+++++++.... + + .++.
T Consensus 4 P~~ig~~~lkNRiv~~p~~~~~~~~~~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~l~ 83 (353)
T cd02930 4 PLDLGFTTLRNRVLMGSMHTGLEELDDGIDRLAAFYAERARGGVGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHRLIT 83 (353)
T ss_pred CeeECCEEEccccEeCCccccccCCCCCCHHHHHHHHHHhcCCceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHHHHH
Confidence 35788999999999999962 111122 2345666666666888887653110 0 1 2222
Q ss_pred hc---CCCceeEEeeec--------------------------CChHHH-------HHHHHHHHHcCCcEEEEecCCCCC
Q 020636 119 ST---GPGIRFFQLYVY--------------------------KDRNVV-------AQLVRRAERAGFKAIALTVDTPRL 162 (323)
Q Consensus 119 ~~---~~~~~~~QLy~~--------------------------~d~~~~-------~~~~~~a~~~G~~al~itvd~p~~ 162 (323)
+. .+...++||... -+.+.+ .+.+++++++||+++.|+...
T Consensus 84 ~~vh~~g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ah--- 160 (353)
T cd02930 84 DAVHAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAALAREAGYDGVEIMGSE--- 160 (353)
T ss_pred HHHHHcCCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccc---
Confidence 21 234678888321 011112 233456677899999886421
Q ss_pred CchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcC--CCEEEecc-------
Q 020636 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITK--LPILVKGV------- 233 (323)
Q Consensus 163 g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~--~pv~vK~i------- 233 (323)
|+ +-+.|--| ..+ ..+...+.++ +....+..+.++.+|+.++ .+|.+|..
T Consensus 161 Gy----Ll~qFlsp-~~N----------~RtD~yGGsl------enR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~ 219 (353)
T cd02930 161 GY----LINQFLAP-RTN----------KRTDEWGGSF------ENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEG 219 (353)
T ss_pred ch----HHHHhcCC-ccC----------CCcCccCCCH------HHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCC
Confidence 11 11222111 000 0000011111 1234567889999999985 45666532
Q ss_pred -CCHHH----HHHHHHcCCCEEEEcC--CCCCCCC--C-Ccc--hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHc
Q 020636 234 -LTAED----ARIAVQAGAAGIIVSN--HGARQLD--Y-VPA--TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 301 (323)
Q Consensus 234 -~~~e~----a~~~~~~Gad~i~vs~--~gg~~~~--~-~~~--~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~l 301 (323)
.+.++ ++.+.++|+|.|.||. |..+... . .+. ..+...++++.+ ++||++.|++++..++.++++.
T Consensus 220 g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v--~iPVi~~G~i~~~~~a~~~i~~ 297 (353)
T cd02930 220 GSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAV--DIPVIASNRINTPEVAERLLAD 297 (353)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhC--CCCEEEcCCCCCHHHHHHHHHC
Confidence 34444 5677889999999974 2222111 0 111 245567788877 8999999999999999999998
Q ss_pred C-CCEEEEccccccCcchhh
Q 020636 302 G-ASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 302 G-Ad~V~iG~~~~~~~~~~~ 320 (323)
| +|+|++||+++..|++-+
T Consensus 298 g~~D~V~~gR~~l~dP~~~~ 317 (353)
T cd02930 298 GDADMVSMARPFLADPDFVA 317 (353)
T ss_pred CCCChhHhhHHHHHCccHHH
Confidence 7 999999999999998743
No 85
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=99.27 E-value=1.5e-10 Score=124.95 Aligned_cols=217 Identities=19% Similarity=0.130 Sum_probs=132.2
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCc
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFK 151 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ 151 (323)
.+|.++.|+++.+ +++.-.++|+++.+.|+..+.++.. ...++... .....++|+-. .......+.+. .++
T Consensus 859 ~rf~~~aMSfGal-S~eA~~aLA~a~~~~G~~sntGEGG-~~p~~~~~-~~~~~i~QiaS-GrFGv~~e~l~-----~a~ 929 (1485)
T PRK11750 859 KRFDSAAMSIGAL-SPEAHEALAIAMNRLGGRSNSGEGG-EDPARYGT-EKVSKIKQVAS-GRFGVTPAYLV-----NAE 929 (1485)
T ss_pred cccccccCCCCcc-CHHHHHHHHHHHHHhCCceecCCCC-CCHHHHhc-ccCCeEEEccC-CcCCCCHHHhc-----cCC
Confidence 4699999999866 5668889999999999999998864 33444422 23456888732 22222233333 256
Q ss_pred EEEEecCCCCCCchHHHHhhccCCC-Ccccc--ccccccccCCCccccchhhHHHHhhccCCcc-CHHH----HHHHHHh
Q 020636 152 AIALTVDTPRLGRREADIKNRFTLP-PFLTL--KNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SWKD----VKWLQTI 223 (323)
Q Consensus 152 al~itvd~p~~g~r~~d~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----i~~i~~~ 223 (323)
.|-|.+..-..+- .|=.+| .|++. ..+...+.+. ..+++..++++ +.|+ |.++|+.
T Consensus 930 ~ieIKi~QGAKPG------~GG~Lpg~KV~~~IA~~R~~~~G~----------~liSP~phhdiySieDL~qlI~~Lk~~ 993 (1485)
T PRK11750 930 VLQIKVAQGAKPG------EGGQLPGDKVNPLIARLRYSVPGV----------TLISPPPHHDIYSIEDLAQLIFDLKQV 993 (1485)
T ss_pred EEEEEecCCCCCC------CCCcCccccCCHHHHHHcCCCCCC----------CCCCCCCCccCCCHHHHHHHHHHHHHh
Confidence 6766664322100 000122 12221 1111111110 02222334444 4554 5556666
Q ss_pred c-CCCEEEeccCC--HHH-HHHHHHcCCCEEEEcCCCCCC-------C-CCCcchHHHHHHHHHHh-----cCCCeEEEe
Q 020636 224 T-KLPILVKGVLT--AED-ARIAVQAGAAGIIVSNHGARQ-------L-DYVPATIMALEEVVKAT-----QGRIPVFLD 286 (323)
Q Consensus 224 ~-~~pv~vK~i~~--~e~-a~~~~~~Gad~i~vs~~gg~~-------~-~~~~~~~~~l~~i~~~~-----~~~~pvia~ 286 (323)
. +.||.||.+.. ..+ +.-+.++|+|.|++++|.|.. . +.+.|....|.++.+.+ ++++.|+++
T Consensus 994 ~~~~~I~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~~L~~~glR~rv~l~a~ 1073 (1485)
T PRK11750 994 NPKALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQALVANGLRHKIRLQVD 1073 (1485)
T ss_pred CCCCcEEEEEccCCCccHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHHHHHhcCCCcceEEEEc
Confidence 5 46999997632 222 335678999999999986522 1 22344334576666554 457999999
Q ss_pred cCCCCHHHHHHHHHcCCCEEEEccccc
Q 020636 287 GGVRRGTDVFKALALGASGIFVSIMPC 313 (323)
Q Consensus 287 GGI~~~~di~kal~lGAd~V~iG~~~~ 313 (323)
||++|+.|++||++||||.|.+||+++
T Consensus 1074 Ggl~t~~Dv~kA~aLGAd~~~~gt~~l 1100 (1485)
T PRK11750 1074 GGLKTGLDVIKAAILGAESFGFGTGPM 1100 (1485)
T ss_pred CCcCCHHHHHHHHHcCCcccccchHHH
Confidence 999999999999999999999999775
No 86
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.24 E-value=9.2e-10 Score=115.74 Aligned_cols=107 Identities=19% Similarity=0.112 Sum_probs=80.2
Q ss_pred CccCHHHHHHHHHhc--CCCEEEecc--------CCHHH----HHHHHHcCCCEEEEcCCCCC--CC-CCCc-chHHHHH
Q 020636 210 RSLSWKDVKWLQTIT--KLPILVKGV--------LTAED----ARIAVQAGAAGIIVSNHGAR--QL-DYVP-ATIMALE 271 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~--~~pv~vK~i--------~~~e~----a~~~~~~Gad~i~vs~~gg~--~~-~~~~-~~~~~l~ 271 (323)
..+..+.++.+|+.+ +.||.+|.. .+.++ ++.+.++|+|.|.||..+.. +. ...+ -......
T Consensus 601 ~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~ 680 (765)
T PRK08255 601 LRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFAD 680 (765)
T ss_pred hHHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHH
Confidence 345678999999987 479999954 23444 57778999999999742211 10 0111 1234456
Q ss_pred HHHHHhcCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEccccccCcch
Q 020636 272 EVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFVSIMPCQCPLT 318 (323)
Q Consensus 272 ~i~~~~~~~~pvia~GGI~~~~di~kal~lG-Ad~V~iG~~~~~~~~~ 318 (323)
++++.+ ++||++.|+|++++++.++|+.| ||+|++||+|+.+|+|
T Consensus 681 ~ik~~~--~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~dP~~ 726 (765)
T PRK08255 681 RIRNEA--GIATIAVGAISEADHVNSIIAAGRADLCALARPHLADPAW 726 (765)
T ss_pred HHHHHc--CCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHhCccH
Confidence 677777 79999999999999999999976 9999999999999965
No 87
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.20 E-value=2.4e-10 Score=109.14 Aligned_cols=110 Identities=21% Similarity=0.209 Sum_probs=84.7
Q ss_pred CCccCHHHHHHHHHhcC--CCEEEecc--------CCHHH----HHHHHHcCCCEEEEcCCCCCCCCCC---------cc
Q 020636 209 DRSLSWKDVKWLQTITK--LPILVKGV--------LTAED----ARIAVQAGAAGIIVSNHGARQLDYV---------PA 265 (323)
Q Consensus 209 ~~~~~~~~i~~i~~~~~--~pv~vK~i--------~~~e~----a~~~~~~Gad~i~vs~~gg~~~~~~---------~~ 265 (323)
...+..+.|+.+|+.++ .||.+|.. .+.++ ++.+.+.|+|.|.|+.....+.... +.
T Consensus 198 R~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~ 277 (338)
T cd04733 198 RARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIARE 277 (338)
T ss_pred HHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccc
Confidence 45577899999999984 78999863 35555 5677889999999975432111100 01
Q ss_pred --hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEccccccCcchhh
Q 020636 266 --TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 266 --~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lG-Ad~V~iG~~~~~~~~~~~ 320 (323)
.++...++++.+ ++||+++|+|.+.+++.++++.| ||.|++||+++.+|++=+
T Consensus 278 ~~~~~~~~~ik~~v--~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~iadP~~~~ 333 (338)
T cd04733 278 AYFLEFAEKIRKVT--KTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLALEPDLPN 333 (338)
T ss_pred hhhHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhhCccHHH
Confidence 145667788888 89999999999999999999987 999999999999998743
No 88
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=99.19 E-value=3.5e-10 Score=107.93 Aligned_cols=107 Identities=15% Similarity=-0.005 Sum_probs=83.3
Q ss_pred CccCHHHHHHHHHhcCC-CEEEecc-----------CCHHH----HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHH
Q 020636 210 RSLSWKDVKWLQTITKL-PILVKGV-----------LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEV 273 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~~~-pv~vK~i-----------~~~e~----a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i 273 (323)
..+..+.++.+|+.++. ||.+|.. .+.++ ++.+.+.|+|.|.||... .........++...++
T Consensus 202 ~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~-~~~~~~~~~~~~~~~i 280 (338)
T cd02933 202 ARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPR-VAGNPEDQPPDFLDFL 280 (338)
T ss_pred hhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCC-CCCcccccchHHHHHH
Confidence 45678899999998854 8999853 14444 577788999999996432 1111233456778888
Q ss_pred HHHhcCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEccccccCcchhh
Q 020636 274 VKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 274 ~~~~~~~~pvia~GGI~~~~di~kal~lG-Ad~V~iG~~~~~~~~~~~ 320 (323)
++++ ++|||++|||+ ++++.++|+.| ||.|++||+++.+|+|-+
T Consensus 281 k~~~--~ipvi~~G~i~-~~~a~~~l~~g~~D~V~~gR~~ladP~~~~ 325 (338)
T cd02933 281 RKAF--KGPLIAAGGYD-AESAEAALADGKADLVAFGRPFIANPDLVE 325 (338)
T ss_pred HHHc--CCCEEEECCCC-HHHHHHHHHcCCCCEEEeCHhhhhCcCHHH
Confidence 8888 89999999997 99999999987 999999999999998743
No 89
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=99.18 E-value=1.6e-09 Score=104.72 Aligned_cols=108 Identities=9% Similarity=-0.026 Sum_probs=77.4
Q ss_pred CCccCHHHHHHHHHhcC--CCEEEecc----------CCHHHH----HHHHHcCCCEEEEcCCCCC----CCCCCc--ch
Q 020636 209 DRSLSWKDVKWLQTITK--LPILVKGV----------LTAEDA----RIAVQAGAAGIIVSNHGAR----QLDYVP--AT 266 (323)
Q Consensus 209 ~~~~~~~~i~~i~~~~~--~pv~vK~i----------~~~e~a----~~~~~~Gad~i~vs~~gg~----~~~~~~--~~ 266 (323)
...+..|.++.||+.++ .||.+|.. .+.+++ +.+.+ .+|.+.++...-. .....+ ..
T Consensus 199 R~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~~-~~D~i~vs~g~~~~~~~~~~~~~~~~~ 277 (370)
T cd02929 199 RARFWRETLEDTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVEFVEMLDE-LPDLWDVNVGDWANDGEDSRFYPEGHQ 277 (370)
T ss_pred hhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHHHHHHHHh-hCCEEEecCCCccccccccccCCcccc
Confidence 35567899999999985 56666632 234443 34443 4899988752110 000111 12
Q ss_pred HHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEccccccCcchh
Q 020636 267 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 267 ~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lG-Ad~V~iG~~~~~~~~~~ 319 (323)
++...++++.+ ++|||+.|||++++++.++|+.| ||+|++||+|+.+|++-
T Consensus 278 ~~~~~~ik~~~--~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~ 329 (370)
T cd02929 278 EPYIKFVKQVT--SKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIADPFLP 329 (370)
T ss_pred HHHHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhhCchHH
Confidence 45667788877 89999999999999999999987 99999999999999874
No 90
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=99.12 E-value=1.6e-09 Score=104.42 Aligned_cols=210 Identities=17% Similarity=0.168 Sum_probs=144.5
Q ss_pred ccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCC------HHH--HHhcC--CCceeEEeeecCChHHH
Q 020636 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSS------VEE--VASTG--PGIRFFQLYVYKDRNVV 138 (323)
Q Consensus 69 ~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~------~ee--i~~~~--~~~~~~QLy~~~d~~~~ 138 (323)
++.--.++||++-. |+++++|.|.++|...+.|+|+.+. ..| +.+.. ...+.+||-. ..+..+
T Consensus 262 D~r~K~~LaPLTTv------GNLPFRRlCk~lGADvTcgEMA~~tpLlqG~~sEWALlkRH~sEdiFGVQlag-~~pdt~ 334 (614)
T KOG2333|consen 262 DFRDKKYLAPLTTV------GNLPFRRLCKKLGADVTCGEMAMATPLLQGTASEWALLKRHQSEDIFGVQLAG-SKPDTA 334 (614)
T ss_pred ccccceeecccccc------CCccHHHHHHHhCCccchhHHHHHHHHhcccchhhhhhhhcCcccceeeEecc-CChHHH
Confidence 34466899997653 6779999999999999999985421 111 22222 3578999964 444444
Q ss_pred HHHHHH-HHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHH
Q 020636 139 AQLVRR-AERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (323)
Q Consensus 139 ~~~~~~-a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (323)
.+.++- ++..-++.|+||++||.. + .. ..+.|+++. ..|......+
T Consensus 335 ~kaaq~i~e~~~VDFIDlN~GCPID------l----------vy-----------~qG~GsALl------~rp~rl~~~l 381 (614)
T KOG2333|consen 335 AKAAQVIAETCDVDFIDLNMGCPID------L----------VY-----------RQGGGSALL------NRPARLIRIL 381 (614)
T ss_pred HHHHHHHHhhcceeeeeccCCCChh------e----------ee-----------ccCCcchhh------cCcHHHHHHH
Confidence 444433 345678999999999972 1 00 112333332 1233334455
Q ss_pred HHHHHhcC-CCEEEeccCC--------HHHHHHHH-HcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEec
Q 020636 218 KWLQTITK-LPILVKGVLT--------AEDARIAV-QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287 (323)
Q Consensus 218 ~~i~~~~~-~pv~vK~i~~--------~e~a~~~~-~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~G 287 (323)
+......+ +|+.||..+- .+-...+. +.|+++|.++++...|-+...+.++.+.++.+.+...+|+|.+|
T Consensus 382 ~~m~~vs~~iPiTVKiRTG~keg~~~a~~Li~~i~newg~savTlHGRSRqQRYTK~AnWdYi~e~a~~ak~~l~liGNG 461 (614)
T KOG2333|consen 382 RAMNAVSGDIPITVKIRTGTKEGHPVAHELIPRIVNEWGASAVTLHGRSRQQRYTKSANWDYIEECADKAKSALPLIGNG 461 (614)
T ss_pred HHHHHhccCCCeEEEEecccccCchhHHHHHHHHhhccCcceEEecCchhhhhhhcccChHHHHHHHHhcccCceeEecC
Confidence 55555554 5999996421 12234444 89999999966555556667789999999999886569999999
Q ss_pred CCCCHHHHHHHHHcC--CCEEEEccccccCcch
Q 020636 288 GVRRGTDVFKALALG--ASGIFVSIMPCQCPLT 318 (323)
Q Consensus 288 GI~~~~di~kal~lG--Ad~V~iG~~~~~~~~~ 318 (323)
.|-|.+|-.+-+..+ .+.|||||..+..||.
T Consensus 462 Di~S~eDw~~~~~~~p~v~svMIaRGALIKPWI 494 (614)
T KOG2333|consen 462 DILSWEDWYERLNQNPNVDSVMIARGALIKPWI 494 (614)
T ss_pred ccccHHHHHHHhhcCCCcceEEeeccccccchH
Confidence 999999999888866 9999999999999984
No 91
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=99.10 E-value=5.1e-10 Score=102.57 Aligned_cols=105 Identities=26% Similarity=0.276 Sum_probs=83.4
Q ss_pred HHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCC------------------C-----C-------CC
Q 020636 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------------------L-----D-------YV 263 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~------------------~-----~-------~~ 263 (323)
.+.+..+++.++.|+ +-++.+.++|.++.+.|+|.|-..+-.|+. + + ..
T Consensus 110 d~~~~~~K~~f~~~f-mad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~ 188 (293)
T PRK04180 110 DEEYHIDKWDFTVPF-VCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKEL 188 (293)
T ss_pred HHHHHHHHHHcCCCE-EccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhcccc
Confidence 456778888887654 668899999999999999999876322220 0 0 12
Q ss_pred cchHHHHHHHHHHhcCCCeEE--EecCCCCHHHHHHHHHcCCCEEEEccccccCcchhhh
Q 020636 264 PATIMALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFVSIMPCQCPLTEKI 321 (323)
Q Consensus 264 ~~~~~~l~~i~~~~~~~~pvi--a~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~~~~ 321 (323)
.+++++|.++++.. ++||+ +.|||.|++|+.+++.+||++|.+|+.++..++-.++
T Consensus 189 ~~~~elL~ei~~~~--~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~ 246 (293)
T PRK04180 189 QAPYELVKEVAELG--RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKR 246 (293)
T ss_pred CCCHHHHHHHHHhC--CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHH
Confidence 45788999998876 79998 9999999999999999999999999999876665544
No 92
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=99.10 E-value=1.6e-08 Score=87.95 Aligned_cols=86 Identities=15% Similarity=0.093 Sum_probs=73.2
Q ss_pred cCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCC--CCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHc
Q 020636 224 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 301 (323)
Q Consensus 224 ~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~l 301 (323)
...-+++..+.+.||+..+.++|+|.|-..-+|++. .....+.+++++++.+ . +++||+.|.+.|++++.+++.+
T Consensus 125 ~~~~l~MAD~St~ee~l~a~~~G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~-~--~~~vIAEGr~~tP~~Ak~a~~~ 201 (229)
T COG3010 125 YPGQLAMADCSTFEEGLNAHKLGFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSD-A--GCRVIAEGRYNTPEQAKKAIEI 201 (229)
T ss_pred cCCcEEEeccCCHHHHHHHHHcCCcEEecccccccCCCCCCCCCcHHHHHHHHh-C--CCeEEeeCCCCCHHHHHHHHHh
Confidence 345689999999999999999999999765555443 2334678899998887 3 7999999999999999999999
Q ss_pred CCCEEEEcccc
Q 020636 302 GASGIFVSIMP 312 (323)
Q Consensus 302 GAd~V~iG~~~ 312 (323)
||++|.+|+++
T Consensus 202 Ga~aVvVGsAI 212 (229)
T COG3010 202 GADAVVVGSAI 212 (229)
T ss_pred CCeEEEECccc
Confidence 99999999876
No 93
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=99.09 E-value=6.9e-09 Score=94.88 Aligned_cols=104 Identities=25% Similarity=0.259 Sum_probs=85.2
Q ss_pred HHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCC-----------------------C-------CC
Q 020636 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL-----------------------D-------YV 263 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~-----------------------~-------~~ 263 (323)
.+.+..+|+.++. +++-++.|.++|.++.+.|+|.|-...+|++.- + ..
T Consensus 101 ~~~~~~iK~~~~~-l~MAD~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~ 179 (283)
T cd04727 101 DEEHHIDKHKFKV-PFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEI 179 (283)
T ss_pred HHHHHHHHHHcCC-cEEccCCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccc
Confidence 4467778887755 567899999999999999999998877665431 0 12
Q ss_pred cchHHHHHHHHHHhcCCCeEE--EecCCCCHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 264 PATIMALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 264 ~~~~~~l~~i~~~~~~~~pvi--a~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
.+.++.|.++.+.+ ++||+ +.|||.+++++.+++.+||++|++|++++..++-.+
T Consensus 180 ~~d~elLk~l~~~~--~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~ 236 (283)
T cd04727 180 QAPYELVKETAKLG--RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEK 236 (283)
T ss_pred CCCHHHHHHHHHhc--CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHH
Confidence 35788999998877 79997 999999999999999999999999999987655444
No 94
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=99.09 E-value=3.4e-09 Score=94.90 Aligned_cols=84 Identities=17% Similarity=0.207 Sum_probs=64.1
Q ss_pred cCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccc
Q 020636 233 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 233 i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~ 312 (323)
+.+.++++++.+.|+|.+.+++..+. ...+.++.+.++++.++.++||++.|||.+++|+.+++.+||++|.+|+++
T Consensus 128 v~~~~e~~~~~~~g~~~i~~t~~~~~---~~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai 204 (217)
T cd00331 128 VHDEEELERALALGAKIIGINNRDLK---TFEVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESL 204 (217)
T ss_pred ECCHHHHHHHHHcCCCEEEEeCCCcc---ccCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 45677777777777777766532222 123456777888776544789999999999999999999999999999999
Q ss_pred ccCcchh
Q 020636 313 CQCPLTE 319 (323)
Q Consensus 313 ~~~~~~~ 319 (323)
+..++-.
T Consensus 205 ~~~~~p~ 211 (217)
T cd00331 205 MRAPDPG 211 (217)
T ss_pred cCCCCHH
Confidence 8876543
No 95
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=99.07 E-value=7.9e-09 Score=99.17 Aligned_cols=108 Identities=25% Similarity=0.245 Sum_probs=81.0
Q ss_pred ccCHHHHHHHHHhcC--CCEEEecc---------CCHHH----HHHHHHcC-CCEEEEcCCCCC---CCCCC-cc-hHHH
Q 020636 211 SLSWKDVKWLQTITK--LPILVKGV---------LTAED----ARIAVQAG-AAGIIVSNHGAR---QLDYV-PA-TIMA 269 (323)
Q Consensus 211 ~~~~~~i~~i~~~~~--~pv~vK~i---------~~~e~----a~~~~~~G-ad~i~vs~~gg~---~~~~~-~~-~~~~ 269 (323)
.+..|.++.+|+.++ .||.++.. .+.++ ++.+.+.| +|.|.++..+.. ..... +. ....
T Consensus 200 Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~ 279 (363)
T COG1902 200 RFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEF 279 (363)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHH
Confidence 366889999999995 47888854 13333 77888999 799999864321 11111 11 1234
Q ss_pred HHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEccccccCcchhh
Q 020636 270 LEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 270 l~~i~~~~~~~~pvia~GGI~~~~di~kal~lG-Ad~V~iG~~~~~~~~~~~ 320 (323)
...++..+ ++|||++|+|.+++.+.++|+-| ||.|.+||+|+.+|.|-+
T Consensus 280 a~~i~~~~--~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~ladP~~~~ 329 (363)
T COG1902 280 AARIKKAV--RIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLADPDLVL 329 (363)
T ss_pred HHHHHHhc--CCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhcCccHHH
Confidence 44566666 69999999999999999999998 999999999999998854
No 96
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=99.07 E-value=3.6e-09 Score=97.49 Aligned_cols=167 Identities=16% Similarity=0.150 Sum_probs=100.0
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchHHHHhh---ccCCCCccccccc-cccccCCCccccchhhHHHHhhccCCc-cC
Q 020636 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKN---RFTLPPFLTLKNF-QGLDLGKMDEANDSGLAAYVAGQIDRS-LS 213 (323)
Q Consensus 139 ~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 213 (323)
.++.+..++.|+.+|-+..|...++.-..+++. ...+| .+ .++-..+. .+.......-|-- +.
T Consensus 73 ~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v~iP------vl~kdfi~~~~------qi~~a~~~GAD~VlLi 140 (260)
T PRK00278 73 VEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAVSLP------VLRKDFIIDPY------QIYEARAAGADAILLI 140 (260)
T ss_pred HHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhcCCC------EEeeeecCCHH------HHHHHHHcCCCEEEEE
Confidence 467778889999999888887776554444432 11122 11 11111110 0111111111111 11
Q ss_pred -----HHHHHHHHHhc---CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEE
Q 020636 214 -----WKDVKWLQTIT---KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (323)
Q Consensus 214 -----~~~i~~i~~~~---~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia 285 (323)
.+.++.+.+.. +. ..+-.+.+.++++++.++|+|.|.+++. .+....+.++...++.+.+++..++|+
T Consensus 141 ~~~l~~~~l~~li~~a~~lGl-~~lvevh~~~E~~~A~~~gadiIgin~r---dl~~~~~d~~~~~~l~~~~p~~~~vIa 216 (260)
T PRK00278 141 VAALDDEQLKELLDYAHSLGL-DVLVEVHDEEELERALKLGAPLIGINNR---NLKTFEVDLETTERLAPLIPSDRLVVS 216 (260)
T ss_pred eccCCHHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHcCCCEEEECCC---CcccccCCHHHHHHHHHhCCCCCEEEE
Confidence 11233333222 22 2233456777888888888887776432 222234456677777776654579999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEccccccCcchhhh
Q 020636 286 DGGVRRGTDVFKALALGASGIFVSIMPCQCPLTEKI 321 (323)
Q Consensus 286 ~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~~~~ 321 (323)
.|||.+++|+.+++.+|||+|.+|+.++..++.++.
T Consensus 217 egGI~t~ed~~~~~~~Gad~vlVGsaI~~~~dp~~~ 252 (260)
T PRK00278 217 ESGIFTPEDLKRLAKAGADAVLVGESLMRADDPGAA 252 (260)
T ss_pred EeCCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHH
Confidence 999999999999999999999999999998876553
No 97
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=99.04 E-value=5.7e-08 Score=93.61 Aligned_cols=104 Identities=13% Similarity=-0.089 Sum_probs=76.3
Q ss_pred ccCHHHHHHHHHhcC-CCEEEecc-----------CCHHH-----HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHH
Q 020636 211 SLSWKDVKWLQTITK-LPILVKGV-----------LTAED-----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEV 273 (323)
Q Consensus 211 ~~~~~~i~~i~~~~~-~pv~vK~i-----------~~~e~-----a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i 273 (323)
.+..|.|+.+|+.++ -.|.+|.. .+.++ ++.+.+.|+|.|.|+..... ...+-......++
T Consensus 210 Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~--~~~~~~~~~~~~i 287 (362)
T PRK10605 210 RLVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWA--GGEPYSDAFREKV 287 (362)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEecccccc--CCccccHHHHHHH
Confidence 356789999999884 24777642 34444 56777889999999852111 0111123444667
Q ss_pred HHHhcCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEccccccCcchh
Q 020636 274 VKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 274 ~~~~~~~~pvia~GGI~~~~di~kal~lG-Ad~V~iG~~~~~~~~~~ 319 (323)
++.+ ++||++.|++ +++.+.++|+.| ||.|++||+|+.+|+|-
T Consensus 288 k~~~--~~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~iadPd~~ 331 (362)
T PRK10605 288 RARF--HGVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYIANPDLV 331 (362)
T ss_pred HHHC--CCCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhhhCccHH
Confidence 7777 7899999996 899999999998 99999999999999874
No 98
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=99.00 E-value=1.4e-08 Score=91.71 Aligned_cols=104 Identities=22% Similarity=0.371 Sum_probs=83.1
Q ss_pred cCHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcCC---------------CC------------------
Q 020636 212 LSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSNH---------------GA------------------ 257 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~~---------------gg------------------ 257 (323)
.+++.++.+++.+++|+++. ++.++++++.+.+.|||.|++... |.
T Consensus 60 ~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~ 139 (234)
T cd04732 60 VNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKG 139 (234)
T ss_pred CCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECC
Confidence 46788899999889999998 578999999999999999987321 11
Q ss_pred ----CCC------------------------C--CCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEE
Q 020636 258 ----RQL------------------------D--YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 307 (323)
Q Consensus 258 ----~~~------------------------~--~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~ 307 (323)
... + ...+.++.+.++.+.+ ++||++.|||++.+|+.+++..||++|+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~~--~ipvi~~GGi~~~~di~~~~~~Ga~gv~ 217 (234)
T cd04732 140 WLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSGPNFELYKELAAAT--GIPVIASGGVSSLDDIKALKELGVAGVI 217 (234)
T ss_pred CeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCCCCHHHHHHHHHhc--CCCEEEecCCCCHHHHHHHHHCCCCEEE
Confidence 000 0 0124567788888776 7999999999999999999999999999
Q ss_pred EccccccCcc
Q 020636 308 VSIMPCQCPL 317 (323)
Q Consensus 308 iG~~~~~~~~ 317 (323)
+||+|+..+.
T Consensus 218 vg~~~~~~~~ 227 (234)
T cd04732 218 VGKALYEGKI 227 (234)
T ss_pred EeHHHHcCCC
Confidence 9999988764
No 99
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=98.97 E-value=1.7e-08 Score=91.07 Aligned_cols=102 Identities=25% Similarity=0.373 Sum_probs=78.3
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcC---------------CCCCC-----------------
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSN---------------HGARQ----------------- 259 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~---------------~gg~~----------------- 259 (323)
+.+.++.+++.++.|+.++ ++.+.++++.+.++|||.|++.. .|...
T Consensus 60 ~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~ 139 (230)
T TIGR00007 60 NLPVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGW 139 (230)
T ss_pred cHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCC
Confidence 4667888888888888887 46888888888889998887732 11000
Q ss_pred -----C------------------------C--CCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEE
Q 020636 260 -----L------------------------D--YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFV 308 (323)
Q Consensus 260 -----~------------------------~--~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~i 308 (323)
. + .....++.+.++.+.+ ++||+++|||++.+|+.+++..||++|++
T Consensus 140 ~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~~--~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 140 LEKSEVSLEELAKRLEELGLEGIIYTDISRDGTLSGPNFELTKELVKAV--NVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred cccCCCCHHHHHHHHHhCCCCEEEEEeecCCCCcCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 0 0 1123467778887776 79999999999999999999999999999
Q ss_pred ccccccCc
Q 020636 309 SIMPCQCP 316 (323)
Q Consensus 309 G~~~~~~~ 316 (323)
||+|+...
T Consensus 218 g~a~~~~~ 225 (230)
T TIGR00007 218 GKALYEGK 225 (230)
T ss_pred eHHHHcCC
Confidence 99997653
No 100
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=98.94 E-value=2.8e-08 Score=89.24 Aligned_cols=170 Identities=20% Similarity=0.194 Sum_probs=107.3
Q ss_pred eecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCcccc-----------ch
Q 020636 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEAN-----------DS 198 (323)
Q Consensus 130 y~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~ 198 (323)
-+....+.+.++++++.+.|+.+++|. |..-...++.-.+ .++.+..+.++|.|...... +.
T Consensus 16 ~p~~t~~~i~~~~~~A~~~~~~avcv~---p~~v~~a~~~l~~----~~v~v~tVigFP~G~~~~~~K~~e~~~Ai~~GA 88 (221)
T PRK00507 16 KPEATEEDIDKLCDEAKEYGFASVCVN---PSYVKLAAELLKG----SDVKVCTVIGFPLGANTTAVKAFEAKDAIANGA 88 (221)
T ss_pred CCCCCHHHHHHHHHHHHHhCCeEEEEC---HHHHHHHHHHhCC----CCCeEEEEecccCCCChHHHHHHHHHHHHHcCC
Confidence 334567888899999999999999876 3322222222111 23455556677766422100 00
Q ss_pred hhHHHH---hhc--cCCccCHHHHHHHHHhcCCCEEEecc-----CCHHH----HHHHHHcCCCEEEEcCCCCCCCCCCc
Q 020636 199 GLAAYV---AGQ--IDRSLSWKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVP 264 (323)
Q Consensus 199 ~~~~~~---~~~--~~~~~~~~~i~~i~~~~~~pv~vK~i-----~~~e~----a~~~~~~Gad~i~vs~~gg~~~~~~~ 264 (323)
.-.+.+ +.. ++.....++++.+++.. .|+.+|.+ ++.++ ++.+.++|+|.|..|..- ..+.
T Consensus 89 ~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~-~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTsTG~----~~~g 163 (221)
T PRK00507 89 DEIDMVINIGALKSGDWDAVEADIRAVVEAA-GGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTSTGF----STGG 163 (221)
T ss_pred ceEeeeccHHHhcCCCHHHHHHHHHHHHHhc-CCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcCCCC----CCCC
Confidence 000000 111 11112234566777654 47889975 45444 456789999988776422 1234
Q ss_pred chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccc
Q 020636 265 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIM 311 (323)
Q Consensus 265 ~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~ 311 (323)
.+++.+..+.+.++++++|.++|||+|.+|+.+.+.+||+.++..+.
T Consensus 164 at~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aGA~riGtS~~ 210 (221)
T PRK00507 164 ATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAGATRLGTSAG 210 (221)
T ss_pred CCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcCcceEccCcH
Confidence 67777878888887789999999999999999999999999877654
No 101
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=98.93 E-value=7.2e-09 Score=94.81 Aligned_cols=105 Identities=26% Similarity=0.264 Sum_probs=85.4
Q ss_pred HHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCC---------------------C----------C
Q 020636 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL---------------------D----------Y 262 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~---------------------~----------~ 262 (323)
.+.+..+++.++.|+ +-++.+.++|.++.+.|+|.|-..+.||+.- . .
T Consensus 103 de~~~~~K~~f~vpf-mad~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~ 181 (287)
T TIGR00343 103 DWTFHIDKKKFKVPF-VCGARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKE 181 (287)
T ss_pred HHHHHHHHHHcCCCE-EccCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcc
Confidence 445677788887665 6789999999999999999998877666431 0 0
Q ss_pred CcchHHHHHHHHHHhcCCCeEE--EecCCCCHHHHHHHHHcCCCEEEEccccccCcchhhh
Q 020636 263 VPATIMALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFVSIMPCQCPLTEKI 321 (323)
Q Consensus 263 ~~~~~~~l~~i~~~~~~~~pvi--a~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~~~~ 321 (323)
..+++++|.++++.. ++||+ +.|||.|++|+.+++.+||++|.+|+.++..++-+++
T Consensus 182 ~~~~~elLkei~~~~--~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~ 240 (287)
T TIGR00343 182 LRVPVELLLEVLKLG--KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKL 240 (287)
T ss_pred cCCCHHHHHHHHHhC--CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHH
Confidence 236788999998876 79998 9999999999999999999999999999876655543
No 102
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.90 E-value=4.7e-08 Score=89.09 Aligned_cols=102 Identities=22% Similarity=0.262 Sum_probs=75.6
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcCC---------------CCC------------------
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSNH---------------GAR------------------ 258 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~~---------------gg~------------------ 258 (323)
+.+.|+++.+.+++|+.+. |+.+.|+++.++++||+.+++... +.+
T Consensus 63 n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~ 142 (241)
T PRK14024 63 NRELLAEVVGKLDVKVELSGGIRDDESLEAALATGCARVNIGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAARGWT 142 (241)
T ss_pred cHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccCCee
Confidence 3567777777777888777 467888888888888888766220 000
Q ss_pred --C------------------------CC--CCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHH---cCCCEEE
Q 020636 259 --Q------------------------LD--YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA---LGASGIF 307 (323)
Q Consensus 259 --~------------------------~~--~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~---lGAd~V~ 307 (323)
. .+ ...+.++.+.++.+.+ ++|||++|||+|.+|+.+++. .||++|+
T Consensus 143 ~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~~--~ipviasGGi~s~~D~~~l~~~~~~GvdgV~ 220 (241)
T PRK14024 143 RDGGDLWEVLERLDSAGCSRYVVTDVTKDGTLTGPNLELLREVCART--DAPVVASGGVSSLDDLRALAELVPLGVEGAI 220 (241)
T ss_pred ecCccHHHHHHHHHhcCCCEEEEEeecCCCCccCCCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHhhhccCCccEEE
Confidence 0 00 1234788888888877 899999999999999999875 4999999
Q ss_pred EccccccCc
Q 020636 308 VSIMPCQCP 316 (323)
Q Consensus 308 iG~~~~~~~ 316 (323)
+||+++..+
T Consensus 221 igra~~~g~ 229 (241)
T PRK14024 221 VGKALYAGA 229 (241)
T ss_pred EeHHHHcCC
Confidence 999987654
No 103
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.85 E-value=8.4e-08 Score=86.64 Aligned_cols=101 Identities=23% Similarity=0.345 Sum_probs=77.9
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcC---------------------------------CCCC
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSN---------------------------------HGAR 258 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~---------------------------------~gg~ 258 (323)
+++.++.+++.++.|++++ |+.+.++++.+.+.|||.|++.. +|..
T Consensus 62 ~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~ 141 (233)
T PRK00748 62 NLELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATDGWL 141 (233)
T ss_pred cHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEccCe
Confidence 5677888888888888888 46888999988889998887622 0100
Q ss_pred ---CC------------------------CC--CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcC-CCEEEE
Q 020636 259 ---QL------------------------DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFV 308 (323)
Q Consensus 259 ---~~------------------------~~--~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lG-Ad~V~i 308 (323)
.. ++ ..+.++.+.++.+.+ ++|||++|||++.+|+.+++..| |++|++
T Consensus 142 ~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~--~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 142 ETSGVTAEDLAKRFEDAGVKAIIYTDISRDGTLSGPNVEATRELAAAV--PIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred ecCCCCHHHHHHHHHhcCCCEEEEeeecCcCCcCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 00 01 124578888888776 69999999999999999999998 999999
Q ss_pred ccccccC
Q 020636 309 SIMPCQC 315 (323)
Q Consensus 309 G~~~~~~ 315 (323)
|++|+..
T Consensus 220 g~a~~~~ 226 (233)
T PRK00748 220 GRALYEG 226 (233)
T ss_pred EHHHHcC
Confidence 9998653
No 104
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=98.85 E-value=6.9e-08 Score=92.39 Aligned_cols=107 Identities=21% Similarity=0.179 Sum_probs=78.1
Q ss_pred cCHHHHHHHHHhc--CCCEEEecc--------CCHHH----HHHHHHcCCCEEEEcCCCCC------C--CCCCc--chH
Q 020636 212 LSWKDVKWLQTIT--KLPILVKGV--------LTAED----ARIAVQAGAAGIIVSNHGAR------Q--LDYVP--ATI 267 (323)
Q Consensus 212 ~~~~~i~~i~~~~--~~pv~vK~i--------~~~e~----a~~~~~~Gad~i~vs~~gg~------~--~~~~~--~~~ 267 (323)
+..|.|+.||+.+ +.||.+|.. .+.++ ++.+.+.|+|.+.++...+. . ..... ..+
T Consensus 201 f~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (341)
T PF00724_consen 201 FLLEIIEAIREAVGPDFPVGVRLSPDDFVEGGITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNL 280 (341)
T ss_dssp HHHHHHHHHHHHHTGGGEEEEEEETTCSSTTSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTH
T ss_pred HHHHHHHHHHHHhcCCceEEEEEeeecccCCCCchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhh
Confidence 5678999999998 477899953 11222 57788899998876532210 0 11111 124
Q ss_pred HHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEccccccCcchhh
Q 020636 268 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 268 ~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lG-Ad~V~iG~~~~~~~~~~~ 320 (323)
.....+++.+ ++|||+.|||++++.+.++++.| ||.|.+||+|+.+|+|-+
T Consensus 281 ~~a~~ik~~~--~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~ladPd~~~ 332 (341)
T PF00724_consen 281 DLAEAIKKAV--KIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLADPDLPN 332 (341)
T ss_dssp HHHHHHHHHH--SSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH-TTHHH
T ss_pred hhhhhhhhhc--CceEEEEeeecchhhhHHHHhcCCceEeeccHHHHhCchHHH
Confidence 5566777777 89999999999999999999988 999999999999998743
No 105
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.81 E-value=4.5e-08 Score=88.92 Aligned_cols=104 Identities=21% Similarity=0.332 Sum_probs=82.9
Q ss_pred cCHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcCC---------------CCC-----------------
Q 020636 212 LSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSNH---------------GAR----------------- 258 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~~---------------gg~----------------- 258 (323)
..++.++.+.+.++.|+++. |+.+.++++.+.++|||.|++... |..
T Consensus 63 ~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g 142 (241)
T PRK13585 63 KNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKG 142 (241)
T ss_pred ccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECC
Confidence 35778888989899999997 578999999999999999987431 100
Q ss_pred -------C----------------------CCC--CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEE
Q 020636 259 -------Q----------------------LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 307 (323)
Q Consensus 259 -------~----------------------~~~--~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~ 307 (323)
. .++ ....++.+.++.+.+ ++||++.|||++.+|+.+++.+||++|+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~--~iPvia~GGI~~~~di~~~~~~Ga~gv~ 220 (241)
T PRK13585 143 WTEKTGYTPVEAAKRFEELGAGSILFTNVDVEGLLEGVNTEPVKELVDSV--DIPVIASGGVTTLDDLRALKEAGAAGVV 220 (241)
T ss_pred CcccCCCCHHHHHHHHHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 0 011 123567788888877 7999999999999999999999999999
Q ss_pred EccccccCcc
Q 020636 308 VSIMPCQCPL 317 (323)
Q Consensus 308 iG~~~~~~~~ 317 (323)
+|++++..+.
T Consensus 221 vgsa~~~~~~ 230 (241)
T PRK13585 221 VGSALYKGKF 230 (241)
T ss_pred EEHHHhcCCc
Confidence 9999987654
No 106
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.77 E-value=6.3e-08 Score=87.85 Aligned_cols=102 Identities=26% Similarity=0.315 Sum_probs=82.2
Q ss_pred cCHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcC---------------CCCC-----------------
Q 020636 212 LSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSN---------------HGAR----------------- 258 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~---------------~gg~----------------- 258 (323)
.+.+.|+++.+.+++|+.+. |+.+.|+++.+.++||+.+++.. +|.+
T Consensus 63 ~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw 142 (234)
T PRK13587 63 REFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGW 142 (234)
T ss_pred chHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCC
Confidence 45778999999889999998 57999999999999999998832 1110
Q ss_pred ----CC------------------------CC--CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEE
Q 020636 259 ----QL------------------------DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFV 308 (323)
Q Consensus 259 ----~~------------------------~~--~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~i 308 (323)
.. ++ ..+.++++.++.+.. ++||+++|||++.+|+.+++.+|+++|.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~~--~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 143 EEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKAT--TIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred cccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCCccCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 00 11 134577788887766 79999999999999999999999999999
Q ss_pred ccccccC
Q 020636 309 SIMPCQC 315 (323)
Q Consensus 309 G~~~~~~ 315 (323)
|+++..-
T Consensus 221 G~a~~~~ 227 (234)
T PRK13587 221 GKAAHQA 227 (234)
T ss_pred hHHHHhC
Confidence 9998753
No 107
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=98.76 E-value=3.8e-07 Score=83.85 Aligned_cols=154 Identities=18% Similarity=0.232 Sum_probs=96.7
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
..|.+.+.++++.+.+.|++.|-+.+ |..- | ...||.- ..+..+.+....+..
T Consensus 20 ~P~~~~~~~~~~~l~~~Gad~iElGi--PfsD------------P----------~aDGpvI---q~a~~~al~~G~~~~ 72 (256)
T TIGR00262 20 DPTLETSLEIIKTLIEAGADALELGV--PFSD------------P----------LADGPTI---QAADLRALRAGMTPE 72 (256)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECC--CCCC------------C----------CCcCHHH---HHHHHHHHHcCCCHH
Confidence 34678888889999999999887654 4410 1 0011100 000111222222333
Q ss_pred cCHHHHHHHHHh-cCCCEEEeccCCH-------HHHHHHHHcCCCEEEEcC---------------CCC---------CC
Q 020636 212 LSWKDVKWLQTI-TKLPILVKGVLTA-------EDARIAVQAGAAGIIVSN---------------HGA---------RQ 259 (323)
Q Consensus 212 ~~~~~i~~i~~~-~~~pv~vK~i~~~-------e~a~~~~~~Gad~i~vs~---------------~gg---------~~ 259 (323)
..++.++++|+. .+.|++.=...++ +-++.+.++|+|+|++.- +|- +.
T Consensus 73 ~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~ 152 (256)
T TIGR00262 73 KCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNAD 152 (256)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 456778888876 6788663333333 347788888998887721 110 00
Q ss_pred ----------CC------------C-----CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccc
Q 020636 260 ----------LD------------Y-----VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 260 ----------~~------------~-----~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~ 312 (323)
.+ + .+...+.+.++++.. +.||++.|||+|++++.+++..|||+|.+|+++
T Consensus 153 ~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~--~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSai 230 (256)
T TIGR00262 153 DERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYS--AKPVLVGFGISKPEQVKQAIDAGADGVIVGSAI 230 (256)
T ss_pred HHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhc--CCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 00 1 122356677777765 679999999999999999999999999999998
Q ss_pred cc
Q 020636 313 CQ 314 (323)
Q Consensus 313 ~~ 314 (323)
+.
T Consensus 231 v~ 232 (256)
T TIGR00262 231 VK 232 (256)
T ss_pred HH
Confidence 64
No 108
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=98.74 E-value=9.3e-08 Score=84.77 Aligned_cols=171 Identities=21% Similarity=0.243 Sum_probs=111.1
Q ss_pred ecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccc-c--------chhhH
Q 020636 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA-N--------DSGLA 201 (323)
Q Consensus 131 ~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~ 201 (323)
+...++.+.+++++|++.|+.+++|+ |....-.++.-.+- ..+.+..+.+||.|..... . ..|..
T Consensus 19 ~~~T~~~I~~l~~eA~~~~f~avCV~---P~~V~~A~~~l~g~---~~~~v~tVigFP~G~~~t~~K~~Ea~~ai~~GAd 92 (228)
T COG0274 19 PDATEEDIARLCAEAKEYGFAAVCVN---PSYVPLAKEALKGS---TVVRVCTVIGFPLGANTTAVKAAEAREAIENGAD 92 (228)
T ss_pred CCCCHHHHHHHHHHHHhhCceEEEEC---cchHHHHHHHhccC---CCeEEEEecCCCCCCChHHHHHHHHHHHHHcCCC
Confidence 34567888889999999999999876 55433333332211 1233455667777653210 0 00000
Q ss_pred H--HH-----hhccCCccCHHHHHHHHHhcCCCEEEecc-----CCHHH----HHHHHHcCCCEEEEcCCCCCCCCCCcc
Q 020636 202 A--YV-----AGQIDRSLSWKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPA 265 (323)
Q Consensus 202 ~--~~-----~~~~~~~~~~~~i~~i~~~~~~pv~vK~i-----~~~e~----a~~~~~~Gad~i~vs~~gg~~~~~~~~ 265 (323)
+ .+ ...++.+...++|+.+++..+.++.+|.| ++.++ .+.+.++|+|.|..|.... .+..
T Consensus 93 EiDmVinig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee~~~A~~i~~~aGAdFVKTSTGf~----~~gA 168 (228)
T COG0274 93 EIDMVINIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDEEKRKACEIAIEAGADFVKTSTGFS----AGGA 168 (228)
T ss_pred eeeeeeeHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHHHHHHHHHHHHhCCCEEEcCCCCC----CCCC
Confidence 0 00 01123333456788888888766788865 44444 4566899999999886322 3456
Q ss_pred hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccc
Q 020636 266 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIM 311 (323)
Q Consensus 266 ~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~ 311 (323)
+++.+.-+++.+++++.|-++|||||.+|+.+++.+||..++..+.
T Consensus 169 T~edv~lM~~~vg~~vgvKaSGGIrt~eda~~~i~aga~RiGtSs~ 214 (228)
T COG0274 169 TVEDVKLMKETVGGRVGVKASGGIRTAEDAKAMIEAGATRIGTSSG 214 (228)
T ss_pred CHHHHHHHHHHhccCceeeccCCcCCHHHHHHHHHHhHHHhccccH
Confidence 6777777777777789999999999999999999999888776553
No 109
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.71 E-value=9.3e-08 Score=85.98 Aligned_cols=85 Identities=19% Similarity=0.254 Sum_probs=67.3
Q ss_pred ccCCHHHHHHHHHcCCCEEEE--cCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 232 GVLTAEDARIAVQAGAAGIIV--SNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 232 ~i~~~e~a~~~~~~Gad~i~v--s~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
-..++..++++.++|++.|-. +--|. . .+....+.+..+.+.. ++|||++|||.+++|+.+++++|||+|++|
T Consensus 130 c~dd~~~ar~l~~~G~~~vmPlg~pIGs-g--~Gi~~~~~I~~I~e~~--~vpVI~egGI~tpeda~~AmelGAdgVlV~ 204 (248)
T cd04728 130 CTDDPVLAKRLEDAGCAAVMPLGSPIGS-G--QGLLNPYNLRIIIERA--DVPVIVDAGIGTPSDAAQAMELGADAVLLN 204 (248)
T ss_pred eCCCHHHHHHHHHcCCCEeCCCCcCCCC-C--CCCCCHHHHHHHHHhC--CCcEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 357899999999999999954 21121 1 2455678888888775 799999999999999999999999999999
Q ss_pred cccccCcchhhh
Q 020636 310 IMPCQCPLTEKI 321 (323)
Q Consensus 310 ~~~~~~~~~~~~ 321 (323)
++.....+-..|
T Consensus 205 SAIt~a~dP~~m 216 (248)
T cd04728 205 TAIAKAKDPVAM 216 (248)
T ss_pred hHhcCCCCHHHH
Confidence 999775554443
No 110
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=98.71 E-value=1.5e-07 Score=84.57 Aligned_cols=100 Identities=27% Similarity=0.413 Sum_probs=84.1
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcC---------------CCCCC---------------C-
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSN---------------HGARQ---------------L- 260 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~---------------~gg~~---------------~- 260 (323)
+.+.++++.+.++.||.+. ||.+.++++.++++|++.+++.. +|++- +
T Consensus 63 n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~av~~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~ 142 (241)
T COG0106 63 NLEAIKEILEATDVPVQVGGGIRSLEDVEALLDAGVARVIIGTAAVKNPDLVKELCEEYGDRIVVALDARDGKVAVSGWQ 142 (241)
T ss_pred cHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHHCCCCEEEEecceecCHHHHHHHHHHcCCcEEEEEEccCCcccccccc
Confidence 5678999999999999998 57999999999999999998843 22210 0
Q ss_pred -----------------------------CC--CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHc-CCCEEEE
Q 020636 261 -----------------------------DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFV 308 (323)
Q Consensus 261 -----------------------------~~--~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~l-GAd~V~i 308 (323)
|+ ..+.++++.++.+++ ++||+++|||+|-+|+..+..+ |.++|.+
T Consensus 143 e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G~n~~l~~~l~~~~--~ipviaSGGv~s~~Di~~l~~~~G~~GvIv 220 (241)
T COG0106 143 EDSGVELEELAKRLEEVGLAHILYTDISRDGTLSGPNVDLVKELAEAV--DIPVIASGGVSSLDDIKALKELSGVEGVIV 220 (241)
T ss_pred ccccCCHHHHHHHHHhcCCCeEEEEecccccccCCCCHHHHHHHHHHh--CcCEEEecCcCCHHHHHHHHhcCCCcEEEE
Confidence 22 256788999999998 8999999999999999999999 9999999
Q ss_pred cccccc
Q 020636 309 SIMPCQ 314 (323)
Q Consensus 309 G~~~~~ 314 (323)
|++|+.
T Consensus 221 G~ALy~ 226 (241)
T COG0106 221 GRALYE 226 (241)
T ss_pred ehHHhc
Confidence 999864
No 111
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.70 E-value=3.4e-07 Score=84.10 Aligned_cols=100 Identities=22% Similarity=0.321 Sum_probs=75.3
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcC---------------CC------------CC------
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSN---------------HG------------AR------ 258 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~---------------~g------------g~------ 258 (323)
+++.++.+++.+++|+++. |+.+.++++.+.++|++.++++. +| |.
T Consensus 62 n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~ 141 (254)
T TIGR00735 62 MIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCW 141 (254)
T ss_pred hHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCcc
Confidence 5677788888778887776 56788888888888888887632 01 10
Q ss_pred ------------CC------------------------C--CCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHH
Q 020636 259 ------------QL------------------------D--YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300 (323)
Q Consensus 259 ------------~~------------------------~--~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~ 300 (323)
.. + ...+.++.+.++++.+ ++|||++|||++.+|+.+++.
T Consensus 142 ~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~~~ 219 (254)
T TIGR00735 142 YEVYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEAV--KIPVIASGGAGKPEHFYEAFT 219 (254)
T ss_pred EEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHH
Confidence 00 0 1234567777777776 799999999999999999999
Q ss_pred cC-CCEEEEcccccc
Q 020636 301 LG-ASGIFVSIMPCQ 314 (323)
Q Consensus 301 lG-Ad~V~iG~~~~~ 314 (323)
.| |++|++|++|..
T Consensus 220 ~g~~dgv~~g~a~~~ 234 (254)
T TIGR00735 220 KGKADAALAASVFHY 234 (254)
T ss_pred cCCcceeeEhHHHhC
Confidence 88 999999999864
No 112
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.69 E-value=1.7e-07 Score=84.38 Aligned_cols=85 Identities=18% Similarity=0.246 Sum_probs=67.1
Q ss_pred ccCCHHHHHHHHHcCCCEEEE--cCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 232 GVLTAEDARIAVQAGAAGIIV--SNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 232 ~i~~~e~a~~~~~~Gad~i~v--s~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
-..+++.++++.++|++.|-. +--|.. .+....+.+..+.+.. ++|||++|||.+++|+.+++++|||+|++|
T Consensus 130 c~~d~~~ak~l~~~G~~~vmPlg~pIGsg---~gi~~~~~i~~i~e~~--~vpVIveaGI~tpeda~~AmelGAdgVlV~ 204 (250)
T PRK00208 130 CTDDPVLAKRLEEAGCAAVMPLGAPIGSG---LGLLNPYNLRIIIEQA--DVPVIVDAGIGTPSDAAQAMELGADAVLLN 204 (250)
T ss_pred eCCCHHHHHHHHHcCCCEeCCCCcCCCCC---CCCCCHHHHHHHHHhc--CCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 347899999999999999954 211211 2344567788887765 799999999999999999999999999999
Q ss_pred cccccCcchhhh
Q 020636 310 IMPCQCPLTEKI 321 (323)
Q Consensus 310 ~~~~~~~~~~~~ 321 (323)
++....++-..|
T Consensus 205 SAItka~dP~~m 216 (250)
T PRK00208 205 TAIAVAGDPVAM 216 (250)
T ss_pred hHhhCCCCHHHH
Confidence 999875555444
No 113
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.69 E-value=3.7e-07 Score=83.71 Aligned_cols=101 Identities=23% Similarity=0.289 Sum_probs=72.7
Q ss_pred cCHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcC---------------CC----------------C--
Q 020636 212 LSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSN---------------HG----------------A-- 257 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~---------------~g----------------g-- 257 (323)
.+++.++++++.+++|+++- |+.+.++++.+.+.|+++++++. +| +
T Consensus 61 ~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~ 140 (253)
T PRK02083 61 TMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRW 140 (253)
T ss_pred chHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCE
Confidence 45777777777777777766 46778888877778888776622 00 0
Q ss_pred ----------CCC------------------------CC--CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHH-
Q 020636 258 ----------RQL------------------------DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA- 300 (323)
Q Consensus 258 ----------~~~------------------------~~--~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~- 300 (323)
... ++ ....++.+.++.+.+ ++|||++|||++.+|+.+++.
T Consensus 141 ~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~--~ipvia~GGv~s~~d~~~~~~~ 218 (253)
T PRK02083 141 EVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKNGYDLELTRAVSDAV--NVPVIASGGAGNLEHFVEAFTE 218 (253)
T ss_pred EEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcCCcCCCCCCCcCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHh
Confidence 000 00 122467777777766 799999999999999999997
Q ss_pred cCCCEEEEcccccc
Q 020636 301 LGASGIFVSIMPCQ 314 (323)
Q Consensus 301 lGAd~V~iG~~~~~ 314 (323)
.||++|++|++|..
T Consensus 219 ~G~~gvivg~al~~ 232 (253)
T PRK02083 219 GGADAALAASIFHF 232 (253)
T ss_pred CCccEEeEhHHHHc
Confidence 49999999999864
No 114
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=98.68 E-value=1e-06 Score=77.31 Aligned_cols=163 Identities=19% Similarity=0.190 Sum_probs=97.5
Q ss_pred eeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhc-
Q 020636 129 LYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQ- 207 (323)
Q Consensus 129 Ly~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 207 (323)
+....+++...++++.+.+.|++.+.+++..+..-.--+.++..+ | .+.+ + .+...+ ...+.......
T Consensus 9 i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~--~-~~~i----G--ag~v~~--~~~~~~a~~~Ga 77 (190)
T cd00452 9 VLRGDDAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEF--P-EALI----G--AGTVLT--PEQADAAIAAGA 77 (190)
T ss_pred EEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHC--C-CCEE----E--EEeCCC--HHHHHHHHHcCC
Confidence 333456666677777777788888888776554211122233322 1 0100 0 000000 00000000000
Q ss_pred ---cCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 208 ---IDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 208 ---~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
.-|..+.+.++. ++..+.++++ ++.|.+++..+.+.|+|+|.+... .+...+.+..+....+ .+|++
T Consensus 78 ~~i~~p~~~~~~~~~-~~~~~~~~i~-gv~t~~e~~~A~~~Gad~i~~~p~-------~~~g~~~~~~l~~~~~-~~p~~ 147 (190)
T cd00452 78 QFIVSPGLDPEVVKA-ANRAGIPLLP-GVATPTEIMQALELGADIVKLFPA-------EAVGPAYIKALKGPFP-QVRFM 147 (190)
T ss_pred CEEEcCCCCHHHHHH-HHHcCCcEEC-CcCCHHHHHHHHHCCCCEEEEcCC-------cccCHHHHHHHHhhCC-CCeEE
Confidence 012233344444 4445777665 778999999999999999998431 1124556666665553 59999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEccccc
Q 020636 285 LDGGVRRGTDVFKALALGASGIFVSIMPC 313 (323)
Q Consensus 285 a~GGI~~~~di~kal~lGAd~V~iG~~~~ 313 (323)
+.||| +.+++.+.+++||++|.+|+.+.
T Consensus 148 a~GGI-~~~n~~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 148 PTGGV-SLDNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred EeCCC-CHHHHHHHHHCCCEEEEEchhcc
Confidence 99999 99999999999999999999876
No 115
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=98.65 E-value=3.1e-07 Score=84.05 Aligned_cols=86 Identities=21% Similarity=0.255 Sum_probs=62.6
Q ss_pred ccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccc
Q 020636 232 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIM 311 (323)
Q Consensus 232 ~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~ 311 (323)
.+.+.++++.+.++|++.|.|.|+- +.+-..++....++...++.++.+|+.+||.+.+|+.++...|+|+|.||+.
T Consensus 164 EVh~~~El~~al~~~a~iiGINnRd---L~tf~vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G~davLVGe~ 240 (254)
T PF00218_consen 164 EVHNEEELERALEAGADIIGINNRD---LKTFEVDLNRTEELAPLIPKDVIVISESGIKTPEDARRLARAGADAVLVGEA 240 (254)
T ss_dssp EESSHHHHHHHHHTT-SEEEEESBC---TTTCCBHTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCTTT-SEEEESHH
T ss_pred EECCHHHHHHHHHcCCCEEEEeCcc---ccCcccChHHHHHHHhhCccceeEEeecCCCCHHHHHHHHHCCCCEEEECHH
Confidence 3566777777777777777666532 3333344555556666666678999999999999999999999999999999
Q ss_pred cccCcchhh
Q 020636 312 PCQCPLTEK 320 (323)
Q Consensus 312 ~~~~~~~~~ 320 (323)
|+..++-.+
T Consensus 241 lm~~~d~~~ 249 (254)
T PF00218_consen 241 LMRSPDPGE 249 (254)
T ss_dssp HHTSSSHHH
T ss_pred HhCCCCHHH
Confidence 999987654
No 116
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=98.65 E-value=1.1e-07 Score=86.01 Aligned_cols=100 Identities=27% Similarity=0.397 Sum_probs=77.5
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcC---------------CC------------C-------
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSN---------------HG------------A------- 257 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~---------------~g------------g------- 257 (323)
+++.|+.+.+.++.|+.+. |+.+.++++.+.++|++.|+++. +| |
T Consensus 61 n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~g 140 (229)
T PF00977_consen 61 NLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALEDPELLEELAERYGSQRIVVSLDARDGYKVATNG 140 (229)
T ss_dssp HHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETT
T ss_pred HHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEEecC
Confidence 4678899999999999998 57999999999999999998832 01 1
Q ss_pred -CC---------------------------CCC--CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEE
Q 020636 258 -RQ---------------------------LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 307 (323)
Q Consensus 258 -~~---------------------------~~~--~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~ 307 (323)
.. .+| ..+.++++.++.+.+ ++|||++|||++.+|+.++...|+++|.
T Consensus 141 w~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~--~~~viasGGv~~~~Dl~~l~~~G~~gvi 218 (229)
T PF00977_consen 141 WQESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQGPDLELLKQLAEAV--NIPVIASGGVRSLEDLRELKKAGIDGVI 218 (229)
T ss_dssp TTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSSS--HHHHHHHHHHH--SSEEEEESS--SHHHHHHHHHTTECEEE
T ss_pred ccccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcCCCCHHHHHHHHHHc--CCCEEEecCCCCHHHHHHHHHCCCcEEE
Confidence 00 022 246788888888888 8999999999999999999999999999
Q ss_pred Ecccccc
Q 020636 308 VSIMPCQ 314 (323)
Q Consensus 308 iG~~~~~ 314 (323)
+|++|..
T Consensus 219 vg~al~~ 225 (229)
T PF00977_consen 219 VGSALHE 225 (229)
T ss_dssp ESHHHHT
T ss_pred EehHhhC
Confidence 9999853
No 117
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=98.65 E-value=1.1e-06 Score=80.04 Aligned_cols=85 Identities=21% Similarity=0.199 Sum_probs=61.9
Q ss_pred ccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccc
Q 020636 232 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIM 311 (323)
Q Consensus 232 ~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~ 311 (323)
.+.+.++++++.++|++.|-|.|+. +.+-..++....++...++.+..+|+.|||+|++|+.++... +|+|.||+.
T Consensus 157 EVh~~~El~~a~~~ga~iiGINnRd---L~t~~vd~~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~~-~davLvG~~ 232 (247)
T PRK13957 157 EVHTEDEAKLALDCGAEIIGINTRD---LDTFQIHQNLVEEVAAFLPPNIVKVGESGIESRSDLDKFRKL-VDAALIGTY 232 (247)
T ss_pred EECCHHHHHHHHhCCCCEEEEeCCC---CccceECHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHh-CCEEEECHH
Confidence 3566677777777777766666543 222233445555666667767889999999999999997776 999999999
Q ss_pred cccCcchhh
Q 020636 312 PCQCPLTEK 320 (323)
Q Consensus 312 ~~~~~~~~~ 320 (323)
++..++-.+
T Consensus 233 lm~~~d~~~ 241 (247)
T PRK13957 233 FMEKKDIRK 241 (247)
T ss_pred HhCCCCHHH
Confidence 999887443
No 118
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.64 E-value=2.3e-07 Score=84.46 Aligned_cols=77 Identities=19% Similarity=0.238 Sum_probs=61.9
Q ss_pred CHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHc-CCCEEEEccccc
Q 020636 235 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFVSIMPC 313 (323)
Q Consensus 235 ~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~l-GAd~V~iG~~~~ 313 (323)
+.+.++.+.+.|+|.|++++..... ......++.+.++.+.+ ++||+++|||++.+|+.+++.. |||+|++||+|.
T Consensus 151 ~~~~~~~l~~~G~d~i~v~~i~~~g-~~~g~~~~~i~~i~~~~--~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~ 227 (243)
T cd04731 151 AVEWAKEVEELGAGEILLTSMDRDG-TKKGYDLELIRAVSSAV--NIPVIASGGAGKPEHFVEAFEEGGADAALAASIFH 227 (243)
T ss_pred HHHHHHHHHHCCCCEEEEeccCCCC-CCCCCCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHH
Confidence 4566789999999999996533211 11234688888888877 8999999999999999999997 999999999885
Q ss_pred c
Q 020636 314 Q 314 (323)
Q Consensus 314 ~ 314 (323)
.
T Consensus 228 ~ 228 (243)
T cd04731 228 F 228 (243)
T ss_pred c
Confidence 4
No 119
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=98.64 E-value=1.6e-06 Score=77.25 Aligned_cols=165 Identities=18% Similarity=0.172 Sum_probs=103.9
Q ss_pred ecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHh----h
Q 020636 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA----G 206 (323)
Q Consensus 131 ~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 206 (323)
...+.+...+.++.+-+.|++.+-+|.+.|..-..-+.++..+. ..+.+ + .|.+.. ...+..... .
T Consensus 17 r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~--~~~~i----G--aGTV~~--~~~~~~a~~aGA~f 86 (206)
T PRK09140 17 RGITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALG--DRALI----G--AGTVLS--PEQVDRLADAGGRL 86 (206)
T ss_pred eCCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcC--CCcEE----e--EEecCC--HHHHHHHHHcCCCE
Confidence 34567777777777778888888888877753333344444442 11110 0 000000 000000000 0
Q ss_pred ccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEe
Q 020636 207 QIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 286 (323)
Q Consensus 207 ~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~ 286 (323)
-.-|..+.+.++..+ ..+.+++. |+.|++++..+.+.|+|+|.+.-. ....++.+++++..++.++|+++.
T Consensus 87 ivsp~~~~~v~~~~~-~~~~~~~~-G~~t~~E~~~A~~~Gad~vk~Fpa-------~~~G~~~l~~l~~~~~~~ipvvai 157 (206)
T PRK09140 87 IVTPNTDPEVIRRAV-ALGMVVMP-GVATPTEAFAALRAGAQALKLFPA-------SQLGPAGIKALRAVLPPDVPVFAV 157 (206)
T ss_pred EECCCCCHHHHHHHH-HCCCcEEc-ccCCHHHHHHHHHcCCCEEEECCC-------CCCCHHHHHHHHhhcCCCCeEEEE
Confidence 112445555556554 44655544 589999999999999999997321 122366777777666435999999
Q ss_pred cCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 287 GGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 287 GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
||| +.+++.+.+++||++|.+|+.++..
T Consensus 158 GGI-~~~n~~~~~~aGa~~vav~s~l~~~ 185 (206)
T PRK09140 158 GGV-TPENLAPYLAAGAAGFGLGSALYRP 185 (206)
T ss_pred CCC-CHHHHHHHHHCCCeEEEEehHhccc
Confidence 999 8899999999999999999999764
No 120
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=98.63 E-value=2.2e-07 Score=82.85 Aligned_cols=167 Identities=20% Similarity=0.238 Sum_probs=102.1
Q ss_pred ecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccc-----------cchh
Q 020636 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA-----------NDSG 199 (323)
Q Consensus 131 ~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~ 199 (323)
+....+.+.++++++.+.++.+++++ |..-...++.-. ..++.+..+.+||.|..... .|+.
T Consensus 13 p~~t~~~i~~lc~~A~~~~~~avcv~---p~~v~~a~~~l~----~~~v~v~tVigFP~G~~~~~~K~~E~~~Av~~GAd 85 (211)
T TIGR00126 13 ADTTEEDIITLCAQAKTYKFAAVCVN---PSYVPLAKELLK----GTEVRICTVVGFPLGASTTDVKLYETKEAIKYGAD 85 (211)
T ss_pred CCCCHHHHHHHHHHHHhhCCcEEEeC---HHHHHHHHHHcC----CCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCCC
Confidence 34567788888999999999998875 332222222211 12455556667777653210 0000
Q ss_pred hHHHHhh-----ccCCccCHHHHHHHHHhcCCCEEEecc-----CCHHH----HHHHHHcCCCEEEEcCCCCCCCCCCcc
Q 020636 200 LAAYVAG-----QIDRSLSWKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPA 265 (323)
Q Consensus 200 ~~~~~~~-----~~~~~~~~~~i~~i~~~~~~pv~vK~i-----~~~e~----a~~~~~~Gad~i~vs~~gg~~~~~~~~ 265 (323)
-.+.+.+ .++.....++++++++..+ .+.+|.+ ++.++ ++.+.++|+|.|..|..-+ ....
T Consensus 86 EiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~-g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf~----~~ga 160 (211)
T TIGR00126 86 EVDMVINIGALKDGNEEVVYDDIRAVVEACA-GVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTSTGFG----AGGA 160 (211)
T ss_pred EEEeecchHhhhCCcHHHHHHHHHHHHHHcC-CCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCC----CCCC
Confidence 0001100 1222334567888887764 3345533 44343 5677899999999974211 1235
Q ss_pred hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 266 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 266 ~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
+.+.+..+.+.++++++|-++||||+.+|+++++++||+.++..
T Consensus 161 t~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~aGa~riGts 204 (211)
T TIGR00126 161 TVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMIEAGASRIGAS 204 (211)
T ss_pred CHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHhhHHhCcc
Confidence 56666666666666899999999999999999999999977543
No 121
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=98.61 E-value=4.4e-07 Score=80.47 Aligned_cols=101 Identities=26% Similarity=0.369 Sum_probs=81.1
Q ss_pred cCHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEc-------------------------------------
Q 020636 212 LSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS------------------------------------- 253 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs------------------------------------- 253 (323)
...+.++++.+.+.+|+.|. |+.+.+|+++++.+|||-|.+.
T Consensus 61 ~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~ 140 (256)
T COG0107 61 TMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENG 140 (256)
T ss_pred hHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCC
Confidence 34677888888889999998 5799999999999999999761
Q ss_pred -----CCCCCC---C------------------------CCCc--chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHH
Q 020636 254 -----NHGARQ---L------------------------DYVP--ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL 299 (323)
Q Consensus 254 -----~~gg~~---~------------------------~~~~--~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal 299 (323)
.|||+. + |+.. =.++++..+.+.+ ++|||++||..+.+|+.+++
T Consensus 141 ~~~v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~GyDl~l~~~v~~~v--~iPvIASGGaG~~ehf~eaf 218 (256)
T COG0107 141 WYEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDGTKAGYDLELTRAVREAV--NIPVIASGGAGKPEHFVEAF 218 (256)
T ss_pred cEEEEecCCCcCCCcCHHHHHHHHHHcCCceEEEeeecccccccCcCHHHHHHHHHhC--CCCEEecCCCCcHHHHHHHH
Confidence 123331 1 2222 2467888888888 89999999999999999999
Q ss_pred HcC-CCEEEEcccccc
Q 020636 300 ALG-ASGIFVSIMPCQ 314 (323)
Q Consensus 300 ~lG-Ad~V~iG~~~~~ 314 (323)
..| ||++..++.|..
T Consensus 219 ~~~~adAaLAAsiFH~ 234 (256)
T COG0107 219 TEGKADAALAASIFHF 234 (256)
T ss_pred HhcCccHHHhhhhhhc
Confidence 988 999999988854
No 122
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=98.60 E-value=1.9e-06 Score=78.24 Aligned_cols=167 Identities=17% Similarity=0.206 Sum_probs=107.0
Q ss_pred HHHHHHHcCCcEEEEecCCCCCCchHHHH---hhccCCCCccccccccccccCCCc--c--ccchhhHHHHhhccCCccC
Q 020636 141 LVRRAERAGFKAIALTVDTPRLGRREADI---KNRFTLPPFLTLKNFQGLDLGKMD--E--ANDSGLAAYVAGQIDRSLS 213 (323)
Q Consensus 141 ~~~~a~~~G~~al~itvd~p~~g~r~~d~---~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~ 213 (323)
.++.-++.|+.+|-|..|.+++.-..+++ +....+|- ...+|...+.+ . ..|+...-.+... ++
T Consensus 71 ia~~Ye~~GAa~iSVLTd~~~F~Gs~e~L~~v~~~v~~Pv-----L~KDFiiD~yQI~~Ar~~GADavLLI~~~----L~ 141 (254)
T COG0134 71 IAKAYEEGGAAAISVLTDPKYFQGSFEDLRAVRAAVDLPV-----LRKDFIIDPYQIYEARAAGADAVLLIVAA----LD 141 (254)
T ss_pred HHHHHHHhCCeEEEEecCccccCCCHHHHHHHHHhcCCCe-----eeccCCCCHHHHHHHHHcCcccHHHHHHh----cC
Confidence 45666788999999999988885444444 34344430 01233222211 0 0111111111111 22
Q ss_pred HHHHHHH---HHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCC
Q 020636 214 WKDVKWL---QTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 214 ~~~i~~i---~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
-+.++++ .+..+.-+++ .+.+.++++++.+.|++.|-+-|+.-+ +-..+++....+....+.+.-+|..+||.
T Consensus 142 ~~~l~el~~~A~~LGm~~LV-EVh~~eEl~rAl~~ga~iIGINnRdL~---tf~vdl~~t~~la~~~p~~~~~IsESGI~ 217 (254)
T COG0134 142 DEQLEELVDRAHELGMEVLV-EVHNEEELERALKLGAKIIGINNRDLT---TLEVDLETTEKLAPLIPKDVILISESGIS 217 (254)
T ss_pred HHHHHHHHHHHHHcCCeeEE-EECCHHHHHHHHhCCCCEEEEeCCCcc---hheecHHHHHHHHhhCCCCcEEEecCCCC
Confidence 2333333 3334554433 578999999999999999999875433 23334555566666677678999999999
Q ss_pred CHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 291 RGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
+++|+.+....||+++.||+.|+.+++..+
T Consensus 218 ~~~dv~~l~~~ga~a~LVG~slM~~~~~~~ 247 (254)
T COG0134 218 TPEDVRRLAKAGADAFLVGEALMRADDPEE 247 (254)
T ss_pred CHHHHHHHHHcCCCEEEecHHHhcCCCHHH
Confidence 999999999999999999999999987654
No 123
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=98.59 E-value=6.5e-07 Score=81.19 Aligned_cols=102 Identities=29% Similarity=0.342 Sum_probs=79.6
Q ss_pred cCHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcC--------------CCC-CC---CC-----------
Q 020636 212 LSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSN--------------HGA-RQ---LD----------- 261 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~--------------~gg-~~---~~----------- 261 (323)
.+.+.++.+.+.+++|+.+. |+.+.|+++.++++||+.+++.. +|. +- +|
T Consensus 65 ~n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~~~~~~~~~~~~~~~~~iivslD~~~~~~~~~~~ 144 (233)
T cd04723 65 DNDEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRGASRVIVGTETLPSDDDEDRLAALGEQRLVLSLDFRGGQLLKPTD 144 (233)
T ss_pred ccHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcCCCeEEEcceeccchHHHHHHHhcCCCCeEEEEeccCCeeccccC
Confidence 45778889988888999888 57899999999999999998743 221 10 00
Q ss_pred ----------------------------CCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccc
Q 020636 262 ----------------------------YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPC 313 (323)
Q Consensus 262 ----------------------------~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~ 313 (323)
...+.++.+.++.+.+ .+||++.|||+|.+|+.+++.+||++|.+|++|.
T Consensus 145 ~~~~~~~~~~~~~~~~~li~~di~~~G~~~g~~~~~~~~i~~~~--~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal~ 222 (233)
T cd04723 145 FIGPEELLRRLAKWPEELIVLDIDRVGSGQGPDLELLERLAARA--DIPVIAAGGVRSVEDLELLKKLGASGALVASALH 222 (233)
T ss_pred cCCHHHHHHHHHHhCCeEEEEEcCccccCCCcCHHHHHHHHHhc--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHHH
Confidence 0123455666666655 7999999999999999999999999999999886
Q ss_pred cC
Q 020636 314 QC 315 (323)
Q Consensus 314 ~~ 315 (323)
..
T Consensus 223 ~g 224 (233)
T cd04723 223 DG 224 (233)
T ss_pred cC
Confidence 43
No 124
>PRK07695 transcriptional regulator TenI; Provisional
Probab=98.55 E-value=9.1e-07 Score=78.29 Aligned_cols=97 Identities=23% Similarity=0.215 Sum_probs=71.2
Q ss_pred HHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCC-CC-CCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 020636 217 VKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ-LD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (323)
Q Consensus 217 i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~-~~-~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~ 293 (323)
++.+|+.++ ..|.+ .+.+.++++.+.+.|+|+|.++.-..+. .. ..+..++.+.++.+.+ ++||++.||| +.+
T Consensus 86 ~~~~r~~~~~~~ig~-s~~s~e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~--~ipvia~GGI-~~~ 161 (201)
T PRK07695 86 VRSVREKFPYLHVGY-SVHSLEEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARAL--SIPVIAIGGI-TPE 161 (201)
T ss_pred HHHHHHhCCCCEEEE-eCCCHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEEcCC-CHH
Confidence 344555443 33333 5678999999999999999765322221 11 1233567888887776 7999999999 999
Q ss_pred HHHHHHHcCCCEEEEccccccCcc
Q 020636 294 DVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 294 di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
++.+++.+||++|.+|+.+...++
T Consensus 162 ~~~~~~~~Ga~gvav~s~i~~~~~ 185 (201)
T PRK07695 162 NTRDVLAAGVSGIAVMSGIFSSAN 185 (201)
T ss_pred HHHHHHHcCCCEEEEEHHHhcCCC
Confidence 999999999999999999986544
No 125
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.55 E-value=7.9e-07 Score=80.39 Aligned_cols=75 Identities=28% Similarity=0.280 Sum_probs=61.0
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH-HHHcCCCEEEEccccc
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK-ALALGASGIFVSIMPC 313 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k-al~lGAd~V~iG~~~~ 313 (323)
.+.++.+.+.|+|.|++++...... .....++.+.++++.+ ++||+++|||++.+|+.+ +...||++|++|++|-
T Consensus 156 ~~~~~~~~~~G~d~i~i~~i~~~g~-~~g~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~h 231 (232)
T TIGR03572 156 VEWAREAEQLGAGEILLNSIDRDGT-MKGYDLELIKTVSDAV--SIPVIALGGAGSLDDLVEVALEAGASAVAAASLFH 231 (232)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCC-cCCCCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhhh
Confidence 5668999999999999976332111 1234788999998887 799999999999999999 5569999999999873
No 126
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=98.54 E-value=5.9e-06 Score=73.26 Aligned_cols=170 Identities=16% Similarity=0.145 Sum_probs=111.6
Q ss_pred eEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHh
Q 020636 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (323)
Q Consensus 126 ~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (323)
.+-+....+.+...+.++.+.+.|++.+-||.++|..-.--+.++..| | .+.+ + .+.+.+ .........
T Consensus 10 liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~--~-~~~v----G--AGTVl~--~~~a~~a~~ 78 (204)
T TIGR01182 10 IVPVIRIDDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEV--P-DALI----G--AGTVLN--PEQLRQAVD 78 (204)
T ss_pred EEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHC--C-CCEE----E--EEeCCC--HHHHHHHHH
Confidence 334444567888888888889999999999999886544445555544 2 1111 0 011000 000001110
Q ss_pred ----hccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCC
Q 020636 206 ----GQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 281 (323)
Q Consensus 206 ----~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~ 281 (323)
.-..|.++.+.+++.++ .++|.+- |++|+-|+..+.++|+|.|.+.-.+ .-+++ ..++.++.-++ ++
T Consensus 79 aGA~FivsP~~~~~v~~~~~~-~~i~~iP-G~~TptEi~~A~~~Ga~~vKlFPA~---~~GG~---~yikal~~plp-~i 149 (204)
T TIGR01182 79 AGAQFIVSPGLTPELAKHAQD-HGIPIIP-GVATPSEIMLALELGITALKLFPAE---VSGGV---KMLKALAGPFP-QV 149 (204)
T ss_pred cCCCEEECCCCCHHHHHHHHH-cCCcEEC-CCCCHHHHHHHHHCCCCEEEECCch---hcCCH---HHHHHHhccCC-CC
Confidence 01236667777777665 4777655 8999999999999999999995421 00112 34444444443 79
Q ss_pred eEEEecCCCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 282 PVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 282 pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
+++..|||.- +.+.+.|.+|+.+|++|+.++...
T Consensus 150 ~~~ptGGV~~-~N~~~~l~aGa~~vg~Gs~L~~~~ 183 (204)
T TIGR01182 150 RFCPTGGINL-ANVRDYLAAPNVACGGGSWLVPKD 183 (204)
T ss_pred cEEecCCCCH-HHHHHHHhCCCEEEEEChhhcCch
Confidence 9999999976 899999999999999999887644
No 127
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=98.54 E-value=3.3e-06 Score=77.85 Aligned_cols=153 Identities=16% Similarity=0.200 Sum_probs=95.0
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
..|.+.+.++++.+.+.|++.|-+.+ |..- | ...||.- ..+..+.+....+..
T Consensus 25 ~P~~~~~~~~~~~l~~~Gad~iElGi--PfSD------------P----------~aDGpvI---q~a~~rAL~~g~~~~ 77 (263)
T CHL00200 25 DPDIVITKKALKILDKKGADIIELGI--PYSD------------P----------LADGPII---QEASNRALKQGINLN 77 (263)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECC--CCCC------------C----------CccCHHH---HHHHHHHHHcCCCHH
Confidence 34678888999999999999887654 5420 1 0011110 001111222222333
Q ss_pred cCHHHHHHHHHhcCCCEEEeccCC-------HHHHHHHHHcCCCEEEEcC---------------CCC---------CC-
Q 020636 212 LSWKDVKWLQTITKLPILVKGVLT-------AEDARIAVQAGAAGIIVSN---------------HGA---------RQ- 259 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~i~~-------~e~a~~~~~~Gad~i~vs~---------------~gg---------~~- 259 (323)
..++.++++|+..+.|+++=+=.+ ..-.+.+.++|+|++++.- ||= +.
T Consensus 78 ~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~ 157 (263)
T CHL00200 78 KILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSK 157 (263)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCH
Confidence 457788888877788865332111 2337888899999998722 110 00
Q ss_pred ---------------------CCCC----cc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccc
Q 020636 260 ---------------------LDYV----PA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPC 313 (323)
Q Consensus 260 ---------------------~~~~----~~-~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~ 313 (323)
..|. +. ..+.+..+++.. +.||.+.+||++++++.++...|||+|.+|++++
T Consensus 158 eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t--~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv 235 (263)
T CHL00200 158 SRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMT--NKPIILGFGISTSEQIKQIKGWNINGIVIGSACV 235 (263)
T ss_pred HHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhc--CCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHH
Confidence 0011 11 124455555555 7999999999999999999999999999999994
No 128
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=98.52 E-value=5.4e-06 Score=73.38 Aligned_cols=86 Identities=17% Similarity=0.173 Sum_probs=56.3
Q ss_pred CHHHHHHHHHcCCCEEEEcCC--CCCCCCCCcchHHHHHHHHHHhc---CCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 235 TAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 235 ~~e~a~~~~~~Gad~i~vs~~--gg~~~~~~~~~~~~l~~i~~~~~---~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
+..+..+....++|+|.+... |++.....+..++.+.++++.++ ..+|++++|||+ .+.+.+++..|||++.+|
T Consensus 115 t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~~gad~iivg 193 (210)
T TIGR01163 115 TPLEFLEYVLPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAEAGADILVAG 193 (210)
T ss_pred CCHHHHHHHHhhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHcCCCEEEEC
Confidence 334444444557888765321 11111122344556666665542 137999999996 699999999999999999
Q ss_pred cccccCcchhhh
Q 020636 310 IMPCQCPLTEKI 321 (323)
Q Consensus 310 ~~~~~~~~~~~~ 321 (323)
++++..++.++.
T Consensus 194 sai~~~~d~~~~ 205 (210)
T TIGR01163 194 SAIFGADDYKEV 205 (210)
T ss_pred hHHhCCCCHHHH
Confidence 999988876553
No 129
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.52 E-value=1.2e-06 Score=80.71 Aligned_cols=77 Identities=21% Similarity=0.176 Sum_probs=63.4
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHH-HcCCCEEEEcccccc
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL-ALGASGIFVSIMPCQ 314 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal-~lGAd~V~iG~~~~~ 314 (323)
.+-++.+.+.|++.+++.+...-+...+ +.++.+.++.+.+ ++|||++|||++.+|+.+++ ..|+++|.+|++|..
T Consensus 155 ~e~~~~~~~~g~~~ii~~~i~~~G~~~G-~d~~~i~~~~~~~--~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~ 231 (258)
T PRK01033 155 LELAKEYEALGAGEILLNSIDRDGTMKG-YDLELLKSFRNAL--KIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVF 231 (258)
T ss_pred HHHHHHHHHcCCCEEEEEccCCCCCcCC-CCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeee
Confidence 4557888899999999864332112223 5899999999887 89999999999999999999 799999999999977
Q ss_pred C
Q 020636 315 C 315 (323)
Q Consensus 315 ~ 315 (323)
.
T Consensus 232 ~ 232 (258)
T PRK01033 232 K 232 (258)
T ss_pred C
Confidence 5
No 130
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.52 E-value=8.3e-07 Score=80.88 Aligned_cols=99 Identities=17% Similarity=0.212 Sum_probs=78.6
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcC--------------CCCC-------------------
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSN--------------HGAR------------------- 258 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~--------------~gg~------------------- 258 (323)
+.+.++++.+.+ .|+.+. |+.+.++++.++++|++.|++.. +|.+
T Consensus 62 n~~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~~p~~l~~~~~~~~~ivvslD~k~g~v~~~gw~~ 140 (241)
T PRK14114 62 NLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKFLKEIDVEPVFSLDTRGGKVAFKGWLA 140 (241)
T ss_pred hHHHHHHHHhhc-CcEEEecCCCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHhCCCEEEEEEccCCEEeeCCCee
Confidence 567888888877 799888 57899999999999999988742 1100
Q ss_pred --CC------------------------CC--CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHc-----C-CC
Q 020636 259 --QL------------------------DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-----G-AS 304 (323)
Q Consensus 259 --~~------------------------~~--~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~l-----G-Ad 304 (323)
.. |+ ..+.++++.++.+.. ++|||++|||++.+|+.++..+ | ++
T Consensus 141 ~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~~G~d~el~~~l~~~~--~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~ 218 (241)
T PRK14114 141 EEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTRKIAIEA--EVKVFAAGGISSENSLKTAQRVHRETNGLLK 218 (241)
T ss_pred cCCCCHHHHHHHHHhcCCCEEEEEeechhhcCCCcCHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHhcccccCCcEE
Confidence 00 12 245778888888776 8999999999999999999987 6 99
Q ss_pred EEEEcccccc
Q 020636 305 GIFVSIMPCQ 314 (323)
Q Consensus 305 ~V~iG~~~~~ 314 (323)
+|.+|++|..
T Consensus 219 gvivg~Al~~ 228 (241)
T PRK14114 219 GVIVGRAFLE 228 (241)
T ss_pred EEEEehHHHC
Confidence 9999999854
No 131
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=98.48 E-value=3.8e-06 Score=86.77 Aligned_cols=167 Identities=20% Similarity=0.224 Sum_probs=106.5
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCchHHHHh---hccCCCCccccccc-cccccCCCc--cc--cchhhHHHHhhccCCc
Q 020636 140 QLVRRAERAGFKAIALTVDTPRLGRREADIK---NRFTLPPFLTLKNF-QGLDLGKMD--EA--NDSGLAAYVAGQIDRS 211 (323)
Q Consensus 140 ~~~~~a~~~G~~al~itvd~p~~g~r~~d~~---~~~~~~~~~~~~~~-~~~~~~~~~--~~--~~~~~~~~~~~~~~~~ 211 (323)
++++.-++.|+.+|-|..|...++-...+++ ....+| .+ .++...+.+ .. .++...-.+.. -
T Consensus 74 ~~a~~y~~~GA~aiSVlTe~~~F~Gs~~~l~~vr~~v~~P------vLrKDFIid~~QI~ea~~~GADavLLI~~----~ 143 (695)
T PRK13802 74 ALAREYEQGGASAISVLTEGRRFLGSLDDFDKVRAAVHIP------VLRKDFIVTDYQIWEARAHGADLVLLIVA----A 143 (695)
T ss_pred HHHHHHHHcCCcEEEEecCcCcCCCCHHHHHHHHHhCCCC------EEeccccCCHHHHHHHHHcCCCEeehhHh----h
Confidence 4556677899999999989888765555543 322333 11 122222211 00 01100001111 1
Q ss_pred cCHHHHHHHH---HhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecC
Q 020636 212 LSWKDVKWLQ---TITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (323)
Q Consensus 212 ~~~~~i~~i~---~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GG 288 (323)
+.-+.++.+. +..++-.+| .+.+.++++++.++|++.|-|-|+. +.+-..+++...++...++.++.+|+.+|
T Consensus 144 L~~~~l~~l~~~a~~lGme~Lv-Evh~~~el~~a~~~ga~iiGINnRd---L~tf~vd~~~t~~L~~~ip~~~~~VsESG 219 (695)
T PRK13802 144 LDDAQLKHLLDLAHELGMTVLV-ETHTREEIERAIAAGAKVIGINARN---LKDLKVDVNKYNELAADLPDDVIKVAESG 219 (695)
T ss_pred cCHHHHHHHHHHHHHcCCeEEE-EeCCHHHHHHHHhCCCCEEEEeCCC---CccceeCHHHHHHHHhhCCCCcEEEEcCC
Confidence 2223344433 334554443 5789999999999999999887753 33333445555566666666788999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 289 VRRGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 289 I~~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
|++++|+..+..+|||+|.||+.|+..++-.+
T Consensus 220 I~~~~d~~~l~~~G~davLIGeslm~~~dp~~ 251 (695)
T PRK13802 220 VFGAVEVEDYARAGADAVLVGEGVATADDHEL 251 (695)
T ss_pred CCCHHHHHHHHHCCCCEEEECHHhhCCCCHHH
Confidence 99999999999999999999999999887543
No 132
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=98.48 E-value=1.9e-05 Score=69.86 Aligned_cols=178 Identities=16% Similarity=0.100 Sum_probs=110.5
Q ss_pred CcHHHHHHHHHHHHcCCcee-ecC-C----CCCCHHHHHhcCCC-ceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecC
Q 020636 86 HPEGEYATARAASAAGTIMT-LSS-W----STSSVEEVASTGPG-IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD 158 (323)
Q Consensus 86 ~~~~e~~~a~aa~~~G~~~~-vs~-~----s~~~~eei~~~~~~-~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd 158 (323)
+++.-+.+++++ +.|+..+ +++ + ....++++++..++ ...+-+.. .|++. ..++++.++|++.+.++.-
T Consensus 10 ~~~~a~~~~~~l-~~~v~~iev~~~l~~~~g~~~i~~l~~~~~~~~i~~d~k~-~d~~~--~~~~~~~~~Gad~i~vh~~ 85 (206)
T TIGR03128 10 DIEEALELAEKV-ADYVDIIEIGTPLIKNEGIEAVKEMKEAFPDRKVLADLKT-MDAGE--YEAEQAFAAGADIVTVLGV 85 (206)
T ss_pred CHHHHHHHHHHc-ccCeeEEEeCCHHHHHhCHHHHHHHHHHCCCCEEEEEEee-ccchH--HHHHHHHHcCCCEEEEecc
Confidence 444456788888 6676544 431 1 12346667666542 23333322 24442 2467788899998876532
Q ss_pred CCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEecc--C-C
Q 020636 159 TPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV--L-T 235 (323)
Q Consensus 159 ~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i--~-~ 235 (323)
++. ....+.++++++ .+.++.+... . .
T Consensus 86 ~~~-------------------------------------------------~~~~~~i~~~~~-~g~~~~~~~~~~~t~ 115 (206)
T TIGR03128 86 ADD-------------------------------------------------ATIKGAVKAAKK-HGKEVQVDLINVKDK 115 (206)
T ss_pred CCH-------------------------------------------------HHHHHHHHHHHH-cCCEEEEEecCCCCh
Confidence 210 001234555555 5778776532 2 3
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.++++.+.+.|+|.|.+.. |.......+..++.+.++++.++ ..++.++||| +.+.+.+++..||+.+.+||.++..
T Consensus 116 ~~~~~~~~~~g~d~v~~~p-g~~~~~~~~~~~~~i~~l~~~~~-~~~i~v~GGI-~~~n~~~~~~~Ga~~v~vGsai~~~ 192 (206)
T TIGR03128 116 VKRAKELKELGADYIGVHT-GLDEQAKGQNPFEDLQTILKLVK-EARVAVAGGI-NLDTIPDVIKLGPDIVIVGGAITKA 192 (206)
T ss_pred HHHHHHHHHcCCCEEEEcC-CcCcccCCCCCHHHHHHHHHhcC-CCcEEEECCc-CHHHHHHHHHcCCCEEEEeehhcCC
Confidence 5888999999999998742 21111122345667777776664 4667779999 8889999999999999999999887
Q ss_pred cchhh
Q 020636 316 PLTEK 320 (323)
Q Consensus 316 ~~~~~ 320 (323)
++.++
T Consensus 193 ~d~~~ 197 (206)
T TIGR03128 193 ADPAE 197 (206)
T ss_pred CCHHH
Confidence 66443
No 133
>KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism]
Probab=98.48 E-value=9e-08 Score=89.09 Aligned_cols=222 Identities=17% Similarity=0.166 Sum_probs=141.1
Q ss_pred ccccccCCCCCccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCC-----------------
Q 020636 49 RPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST----------------- 111 (323)
Q Consensus 49 ~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~----------------- 111 (323)
.|..|.-+++++.+++..|+++++||.++. ..|.....+.+-|-..|.++.+.---.
T Consensus 91 ~~k~~~~l~~ie~~vd~~G~k~~npf~~~s------~Pp~t~~~lm~raf~~gwg~l~~kt~~ld~~kV~nv~prvar~~ 164 (471)
T KOG1799|consen 91 GLKALLYLKSIEELVDWDGQKPANPFHQKS------KPPPTIAELMDRAFPSGWGYLEQKTKILDENKVRNVEPRVARSP 164 (471)
T ss_pred chhhhcchhhhhhhccccCccCCCccccCC------CCCCccHHHHHhhhhcccchhheeeeecchhhheecccceeecc
Confidence 355566788999999999999999999875 233345578888888888887653100
Q ss_pred ----C---------CHHHHH---------------hcCCCce-e---EEeeecCChHHHHHHHHHHHHcCCcEEEEecCC
Q 020636 112 ----S---------SVEEVA---------------STGPGIR-F---FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT 159 (323)
Q Consensus 112 ----~---------~~eei~---------------~~~~~~~-~---~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~ 159 (323)
+ .+|-|. ...|... + +-+| +..-..++..+.+++|++.+-+++.|
T Consensus 165 t~~~~~~p~~~i~~nielIsdr~~e~~L~~f~eLk~~~p~~imIas~Mciy---nk~~w~el~d~~eqag~d~lE~nlsc 241 (471)
T KOG1799|consen 165 TKRSCFIPKRPIPTNIELISDRKAEQYLGTFGELKNVEPVVIMIASEMCIY---NKKCWMELNDSGEQAGQDDLETNLSC 241 (471)
T ss_pred CCCCccccCCCccchhhhhccchHHHHHHHHHHhcccCCceeeehHHHHHh---hhhhHHHHhhhHHhhcccchhccCCC
Confidence 0 011111 1111000 0 0011 12223456677777888888888887
Q ss_pred CCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCH---
Q 020636 160 PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA--- 236 (323)
Q Consensus 160 p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~--- 236 (323)
|+. --++ ++.+. -..+|...-|.-.|++....+|++-|...+.
T Consensus 242 phg-m~er----------gmgla-----------------------~gq~p~v~~EvC~Wi~A~~~Ip~~~kmTPNitd~ 287 (471)
T KOG1799|consen 242 PHG-MCER----------GMGLA-----------------------LGQCPIVDCEVCGWINAKATIPMVSKMTPNITDK 287 (471)
T ss_pred CCC-Cccc----------cccce-----------------------eccChhhhHHHhhhhhhccccccccccCCCcccc
Confidence 762 1110 11110 0125666778899999999999999976543
Q ss_pred -HHHHHHHHcCCCEEEEcCCC------------------CCCCCC-------CcchHHHHHHHHHHhcCCCeEEEecCCC
Q 020636 237 -EDARIAVQAGAAGIIVSNHG------------------ARQLDY-------VPATIMALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 237 -e~a~~~~~~Gad~i~vs~~g------------------g~~~~~-------~~~~~~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
|-|+.+.+.||.+|...|.- |+.-.+ .|..+..+-.|++... ..|+.+.|||.
T Consensus 288 revar~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~sT~GG~S~~AvRPIAl~~V~~IA~~m~-~F~l~~~GGvE 366 (471)
T KOG1799|consen 288 REVARSVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYSTPGGYSYKAVRPIALAKVMNIAKMMK-EFSLSGIGGVE 366 (471)
T ss_pred cccchhcCcccccchhhHhHHHHHhcccccccCCCcccccccCCCCccccccchHHHHHHHHHHHHhh-cCccccccCcc
Confidence 44777888999998764420 111111 2334445555666554 68999999999
Q ss_pred CHHHHHHHHHcCCCEEEEcccccc
Q 020636 291 RGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
++.|.+..|.+|++.|++++..+.
T Consensus 367 t~~~~~~Fil~Gs~~vQVCt~V~~ 390 (471)
T KOG1799|consen 367 TGYDAAEFILLGSNTVQVCTGVMM 390 (471)
T ss_pred cccchhhHhhcCCcHhhhhhHHHh
Confidence 999999999999999999987654
No 134
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=98.47 E-value=1.3e-06 Score=79.71 Aligned_cols=100 Identities=16% Similarity=0.006 Sum_probs=77.9
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcC---------------C------------CC---C---
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSN---------------H------------GA---R--- 258 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~---------------~------------gg---~--- 258 (323)
+.+.++.+.+.++.|+.+. |+.+.++++.+++.|+|.|++.. + .| .
T Consensus 62 n~~~i~~i~~~~~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~g~~ivvslD~k~~g~~~~v~~ 141 (243)
T TIGR01919 62 NEMMLEEVVKLLVVVEELSGGRRDDSSLRAALTGGRARVNGGTAALENPWWAAAVIRYGGDIVAVGLDVLEDGEWHTLGN 141 (243)
T ss_pred hHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhCCHHHHHHHHHHccccEEEEEEEecCCceEEEEC
Confidence 4668888988888999888 67999999999999999998732 1 11 0
Q ss_pred ------CC------------------------CC--CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHH---HcCC
Q 020636 259 ------QL------------------------DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL---ALGA 303 (323)
Q Consensus 259 ------~~------------------------~~--~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal---~lGA 303 (323)
.. || ..+.++++.++.+.. ++|||++|||++.+|+.+.- ..|+
T Consensus 142 ~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt~~G~d~~l~~~l~~~~--~~pviasGGv~s~eDl~~l~~l~~~Gv 219 (243)
T TIGR01919 142 RGWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGLSGGPNELLLEVVAART--DAIVAASGGSSLLDDLRAIKYLDEGGV 219 (243)
T ss_pred CCeecCCCcHHHHHHHHHhCCCCEEEEEecCCcccCCCcCHHHHHHHHhhC--CCCEEEECCcCCHHHHHHHHhhccCCe
Confidence 00 11 245667777777765 79999999999999999864 3599
Q ss_pred CEEEEcccccc
Q 020636 304 SGIFVSIMPCQ 314 (323)
Q Consensus 304 d~V~iG~~~~~ 314 (323)
++|.+|++|..
T Consensus 220 ~gvivg~Al~~ 230 (243)
T TIGR01919 220 SVAIGGKLLYA 230 (243)
T ss_pred eEEEEhHHHHc
Confidence 99999998854
No 135
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.46 E-value=1.5e-06 Score=78.50 Aligned_cols=102 Identities=25% Similarity=0.251 Sum_probs=74.2
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcCCC-------------CCC---CC--------------
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSNHG-------------ARQ---LD-------------- 261 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~~g-------------g~~---~~-------------- 261 (323)
+.+.++++.+.++.|+++. |+.+.+|++.+.+.|++.+++.... |+- +|
T Consensus 61 n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~~~~~l~~~~~~~g~ivvslD~~~g~v~~~gw~~~ 140 (228)
T PRK04128 61 NLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAFDLEFLEKVTSEFEGITVSLDVKGGRIAVKGWLEE 140 (228)
T ss_pred hHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhcCHHHHHHHHHHcCCEEEEEEccCCeEecCCCeEc
Confidence 5677888888889999988 6799999999999999999883211 000 00
Q ss_pred CCcchHHHHHHH------------------------HHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 262 YVPATIMALEEV------------------------VKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 262 ~~~~~~~~l~~i------------------------~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.....++++.++ .+.. .++|||++|||++.+|+.++..+|+++|.+|++|...
T Consensus 141 ~~~~~~~~~~~~~~~~~~ii~t~i~~dGt~~G~d~l~~~~-~~~pviasGGv~~~~Dl~~l~~~g~~gvivg~al~~g 217 (228)
T PRK04128 141 SSIKVEDAYEMLKNYVNRFIYTSIERDGTLTGIEEIERFW-GDEEFIYAGGVSSAEDVKKLAEIGFSGVIIGKALYEG 217 (228)
T ss_pred CCCCHHHHHHHHHHHhCEEEEEeccchhcccCHHHHHHhc-CCCCEEEECCCCCHHHHHHHHHCCCCEEEEEhhhhcC
Confidence 011122322222 2221 2689999999999999999999999999999998543
No 136
>PLN02591 tryptophan synthase
Probab=98.45 E-value=8e-06 Score=74.73 Aligned_cols=154 Identities=19% Similarity=0.231 Sum_probs=95.1
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
..|.+.+.++++...+.|++.|-+.+ |..- | ...||.- ..+..+.+....+..
T Consensus 12 ~P~~e~~~~~~~~l~~~Gad~iElGi--PfSD------------P----------~aDGpvI---q~a~~rAL~~G~~~~ 64 (250)
T PLN02591 12 DPDLDTTAEALRLLDACGADVIELGV--PYSD------------P----------LADGPVI---QAAATRALEKGTTLD 64 (250)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECC--CCCC------------C----------cccCHHH---HHHHHHHHHcCCCHH
Confidence 34678888989989999999887544 5420 1 0011110 001111222222333
Q ss_pred cCHHHHHHHHHhcCCCEEEeccCC-------HHHHHHHHHcCCCEEEEcC---------------CCC---------C--
Q 020636 212 LSWKDVKWLQTITKLPILVKGVLT-------AEDARIAVQAGAAGIIVSN---------------HGA---------R-- 258 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~i~~-------~e~a~~~~~~Gad~i~vs~---------------~gg---------~-- 258 (323)
..++.++++|+..+.|+++=+=.+ .+-.+.+.++|+|++++-. ||= +
T Consensus 65 ~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~ 144 (250)
T PLN02591 65 SVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPT 144 (250)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCH
Confidence 457788888877778865432211 2236788889999887721 100 0
Q ss_pred -------------------C-CCC---C-cchH-HHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccc
Q 020636 259 -------------------Q-LDY---V-PATI-MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPC 313 (323)
Q Consensus 259 -------------------~-~~~---~-~~~~-~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~ 313 (323)
. ..+ . +..+ +.+..+++.. ++||+.--||++++|+.+++..|||+|.+|++|+
T Consensus 145 ~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~--~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalV 222 (250)
T PLN02591 145 ERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVT--DKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMV 222 (250)
T ss_pred HHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcC--CCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHH
Confidence 0 001 1 2223 4466676654 8999998899999999999999999999999985
Q ss_pred c
Q 020636 314 Q 314 (323)
Q Consensus 314 ~ 314 (323)
.
T Consensus 223 k 223 (250)
T PLN02591 223 K 223 (250)
T ss_pred H
Confidence 4
No 137
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.44 E-value=9.8e-07 Score=80.34 Aligned_cols=80 Identities=21% Similarity=0.263 Sum_probs=66.8
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+-++.+.+.|+|.+.+.+-.+ .....++.++.+.++++.+ ++||+++|||++.+|+.+++..||++|++|+.++..
T Consensus 30 ~~~a~~~~~~G~~~i~i~d~~~-~~~~~~~~~~~i~~i~~~~--~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~~ 106 (243)
T cd04731 30 VELAKRYNEQGADELVFLDITA-SSEGRETMLDVVERVAEEV--FIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVEN 106 (243)
T ss_pred HHHHHHHHHCCCCEEEEEcCCc-ccccCcccHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCceEEECchhhhC
Confidence 4668888899999988865432 1123456788899998887 799999999999999999999999999999999998
Q ss_pred cch
Q 020636 316 PLT 318 (323)
Q Consensus 316 ~~~ 318 (323)
|++
T Consensus 107 p~~ 109 (243)
T cd04731 107 PEL 109 (243)
T ss_pred hHH
Confidence 875
No 138
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.42 E-value=1.3e-06 Score=80.31 Aligned_cols=80 Identities=23% Similarity=0.256 Sum_probs=67.4
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+-|+.+.+.|+|.+.+.+.-+. .......++.+.++.+.+ ++||+++|||+|.+|+.+++.+||+.|++||.++.+
T Consensus 33 ~~~a~~~~~~G~~~l~v~Dl~~~-~~~~~~n~~~i~~i~~~~--~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~~ 109 (254)
T TIGR00735 33 VELAQRYDEEGADELVFLDITAS-SEGRTTMIDVVERTAETV--FIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAVKN 109 (254)
T ss_pred HHHHHHHHHcCCCEEEEEcCCcc-cccChhhHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhhC
Confidence 46688888999999998764321 123456788999999888 799999999999999999999999999999999988
Q ss_pred cch
Q 020636 316 PLT 318 (323)
Q Consensus 316 ~~~ 318 (323)
|+.
T Consensus 110 p~~ 112 (254)
T TIGR00735 110 PEL 112 (254)
T ss_pred hHH
Confidence 863
No 139
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.42 E-value=1.6e-05 Score=69.72 Aligned_cols=93 Identities=19% Similarity=0.169 Sum_probs=71.2
Q ss_pred cCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 020636 212 LSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~ 291 (323)
+..++++ .++..+.+.++. +.|++++..+.+.|+|+|.+.- . ......+.++.++..++ ++|+++.||| +
T Consensus 93 ~~~~~~~-~~~~~~~~~i~G-~~t~~e~~~A~~~Gadyv~~Fp--t----~~~~G~~~l~~~~~~~~-~ipvvaiGGI-~ 162 (187)
T PRK07455 93 VDPELIE-AAVAQDIPIIPG-ALTPTEIVTAWQAGASCVKVFP--V----QAVGGADYIKSLQGPLG-HIPLIPTGGV-T 162 (187)
T ss_pred CCHHHHH-HHHHcCCCEEcC-cCCHHHHHHHHHCCCCEEEECc--C----CcccCHHHHHHHHhhCC-CCcEEEeCCC-C
Confidence 4444444 445556676665 8999999999999999999832 1 11224677777777663 5999999999 7
Q ss_pred HHHHHHHHHcCCCEEEEcccccc
Q 020636 292 GTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 292 ~~di~kal~lGAd~V~iG~~~~~ 314 (323)
.+++...++.||++|.+++.++.
T Consensus 163 ~~n~~~~l~aGa~~vav~s~i~~ 185 (187)
T PRK07455 163 LENAQAFIQAGAIAVGLSGQLFP 185 (187)
T ss_pred HHHHHHHHHCCCeEEEEehhccc
Confidence 79999999999999999998864
No 140
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=98.41 E-value=1.2e-05 Score=73.36 Aligned_cols=152 Identities=17% Similarity=0.211 Sum_probs=91.4
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCcc
Q 020636 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (323)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (323)
.+.+.+.+.+++++++|++.+-+.+ |..- .+.++..+.+ ...+.+....+...
T Consensus 11 P~~~~~~~~~~~l~~~Gad~iel~i--Pfsd----------Pv~DG~~I~~---------------a~~~al~~g~~~~~ 63 (242)
T cd04724 11 PDLETTLEILKALVEAGADIIELGI--PFSD----------PVADGPVIQA---------------ASERALANGVTLKD 63 (242)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECC--CCCC----------CCCCCHHHHH---------------HHHHHHHcCCCHHH
Confidence 3567778889999999999887654 5420 0000100000 00011111122234
Q ss_pred CHHHHHHHHHhcCCCEEEeccCC-------HHHHHHHHHcCCCEEEEcC---------------CCC---------CC--
Q 020636 213 SWKDVKWLQTITKLPILVKGVLT-------AEDARIAVQAGAAGIIVSN---------------HGA---------RQ-- 259 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~i~~-------~e~a~~~~~~Gad~i~vs~---------------~gg---------~~-- 259 (323)
.++.++++|+..+.|+++=.-.+ ..-++.+.++|+|++++.. +|- +.
T Consensus 64 ~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~ 143 (242)
T cd04724 64 VLELVKEIRKKNTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDE 143 (242)
T ss_pred HHHHHHHHhhcCCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHH
Confidence 56778888877677765411112 3346777888888887711 110 00
Q ss_pred ---------C-----------CCC-----cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 260 ---------L-----------DYV-----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 260 ---------~-----------~~~-----~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
. .++ ....+.+.++++.. ++||+++|||++.+++.++... ||+|.+|+.++.
T Consensus 144 ~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~--~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv~ 220 (242)
T cd04724 144 RIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYT--DLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALVK 220 (242)
T ss_pred HHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcC--CCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHHH
Confidence 0 011 22345677777654 7999999999999999999999 999999998854
No 141
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=98.41 E-value=8.7e-06 Score=76.99 Aligned_cols=191 Identities=14% Similarity=0.161 Sum_probs=113.1
Q ss_pred HHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhh---c-cCCCCccccccc-cccc
Q 020636 114 VEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKN---R-FTLPPFLTLKNF-QGLD 188 (323)
Q Consensus 114 ~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~---~-~~~~~~~~~~~~-~~~~ 188 (323)
+.|+.++.|...++. ...|+. ++.+.-++.|+.+|-|-.|..+++-...+++. . ..+| .+ .+|-
T Consensus 122 IAEvKrASPSkG~I~--~~~dp~---~iA~~Ye~~GA~aISVLTd~~~F~Gs~e~L~~vr~~~v~lP------vLrKDFI 190 (338)
T PLN02460 122 IAEVKKASPSRGVLR--ENFDPV---EIAQAYEKGGAACLSVLTDEKYFQGSFENLEAIRNAGVKCP------LLCKEFI 190 (338)
T ss_pred EeeeccCCCCCCccC--CCCCHH---HHHHHHHhCCCcEEEEecCcCcCCCCHHHHHHHHHcCCCCC------Eeecccc
Confidence 345556666333322 233553 45566678999999998898888655555543 2 3333 11 1232
Q ss_pred cCCCc----cccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHc-CCCEEEEcCCCCCCCCCC
Q 020636 189 LGKMD----EANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQA-GAAGIIVSNHGARQLDYV 263 (323)
Q Consensus 189 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~-Gad~i~vs~~gg~~~~~~ 263 (323)
..+.+ ...|+...-.+....+ +...+.+-.+.+..+.-++| .+.+.+++.+++++ |++.|-|.|+. +.+-
T Consensus 191 ID~yQI~eAr~~GADAVLLIaaiL~-~~~L~~l~~~A~~LGme~LV-EVH~~~ElerAl~~~ga~iIGINNRd---L~Tf 265 (338)
T PLN02460 191 VDAWQIYYARSKGADAILLIAAVLP-DLDIKYMLKICKSLGMAALI-EVHDEREMDRVLGIEGVELIGINNRS---LETF 265 (338)
T ss_pred CCHHHHHHHHHcCCCcHHHHHHhCC-HHHHHHHHHHHHHcCCeEEE-EeCCHHHHHHHHhcCCCCEEEEeCCC---CCcc
Confidence 22211 0111111111111111 11233333344445654443 57899999999998 99999998754 3332
Q ss_pred cchHHHHHHHHH-----Hh-cCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 264 PATIMALEEVVK-----AT-QGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 264 ~~~~~~l~~i~~-----~~-~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
..+++...++.. .+ +.++-+++.+||++++|+..+..+|||+|.||..|+..++-.+
T Consensus 266 ~vDl~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr~~dp~~ 328 (338)
T PLN02460 266 EVDISNTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQDDPGK 328 (338)
T ss_pred eECHHHHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhCCCCHHH
Confidence 333443334433 23 2356789999999999999999999999999999999887543
No 142
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.40 E-value=1.3e-06 Score=80.04 Aligned_cols=79 Identities=22% Similarity=0.266 Sum_probs=67.3
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+-|+.+.+.|++.+.+.+.... ..+.+..++.++++.+.+ ++||+++|||+|.+|+.+++..||+.|++|+.++.+
T Consensus 33 ~~~a~~~~~~G~~~i~i~dl~~~-~~~~~~~~~~i~~i~~~~--~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~~ 109 (253)
T PRK02083 33 VELAKRYNEEGADELVFLDITAS-SEGRDTMLDVVERVAEQV--FIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVAN 109 (253)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcc-cccCcchHHHHHHHHHhC--CCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhhC
Confidence 46688888999999999764432 123467889999999888 799999999999999999999999999999999988
Q ss_pred cc
Q 020636 316 PL 317 (323)
Q Consensus 316 ~~ 317 (323)
|+
T Consensus 110 p~ 111 (253)
T PRK02083 110 PE 111 (253)
T ss_pred cH
Confidence 86
No 143
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.40 E-value=4e-05 Score=68.55 Aligned_cols=171 Identities=16% Similarity=0.180 Sum_probs=113.5
Q ss_pred eEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHh
Q 020636 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (323)
Q Consensus 126 ~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (323)
.+-+....+.+...++++.+.+.|++.+-||.++|..-.--+.++..|.-.+.+.+ +. |.+.+. ........
T Consensus 15 vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~v----Ga--GTV~~~--~~~~~a~~ 86 (213)
T PRK06552 15 VVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLI----GA--GTVLDA--VTARLAIL 86 (213)
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEE----ee--eeCCCH--HHHHHHHH
Confidence 34444466788888888888899999999999988754445556555421011111 10 110000 00000100
Q ss_pred ----hccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCC
Q 020636 206 ----GQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 281 (323)
Q Consensus 206 ----~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~ 281 (323)
.-..|.++.+.+++.++ .++|++ =|+.|+.++..+.+.|+|+|.+.-.. ....+.++.++..++ .+
T Consensus 87 aGA~FivsP~~~~~v~~~~~~-~~i~~i-PG~~T~~E~~~A~~~Gad~vklFPa~-------~~G~~~ik~l~~~~p-~i 156 (213)
T PRK06552 87 AGAQFIVSPSFNRETAKICNL-YQIPYL-PGCMTVTEIVTALEAGSEIVKLFPGS-------TLGPSFIKAIKGPLP-QV 156 (213)
T ss_pred cCCCEEECCCCCHHHHHHHHH-cCCCEE-CCcCCHHHHHHHHHcCCCEEEECCcc-------cCCHHHHHHHhhhCC-CC
Confidence 11246677778887665 477654 47899999999999999999984211 112455666666553 69
Q ss_pred eEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 282 PVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 282 pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
|+++.|||. .+.+.+.+++||++|.+|+.++..
T Consensus 157 p~~atGGI~-~~N~~~~l~aGa~~vavgs~l~~~ 189 (213)
T PRK06552 157 NVMVTGGVN-LDNVKDWFAAGADAVGIGGELNKL 189 (213)
T ss_pred EEEEECCCC-HHHHHHHHHCCCcEEEEchHHhCc
Confidence 999999997 699999999999999999988654
No 144
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=98.39 E-value=3e-06 Score=76.26 Aligned_cols=98 Identities=18% Similarity=0.233 Sum_probs=72.3
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHH--cCCCEEEEcCC--------------------CCC----CC-----
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQ--AGAAGIIVSNH--------------------GAR----QL----- 260 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~--~Gad~i~vs~~--------------------gg~----~~----- 260 (323)
+.+.|+++.+. .|+.+. |+.+.|+++.+.. .||+.|++..- +++ .+
T Consensus 67 n~~~i~~i~~~--~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a~~~p~~l~~~~~vvslD~~~g~v~~~g~~~~~~ 144 (221)
T TIGR00734 67 NFSLLSKLSKR--VELIADCGVRSPEDLETLPFTLEFASRVVVATETLDITELLRECYTVVSLDFKEKFLDASGLFESLE 144 (221)
T ss_pred hHHHHHHHHhh--CcEEEcCccCCHHHHHHHHhhhccceEEeecChhhCCHHHHHHhhhEEEEEeECCccccccccccHH
Confidence 46677777776 377777 5688888887755 25888876321 111 00
Q ss_pred --------------------CC--CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 261 --------------------DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 261 --------------------~~--~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
++ ..+.++++.++.+.+ ++|||++|||+|.+|+.++..+||++|.+|++|..
T Consensus 145 ~~~~~~~~~g~~ii~tdI~~dGt~~G~d~eli~~i~~~~--~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~ 218 (221)
T TIGR00734 145 EVRDFLNSFDYGLIVLDIHSVGTMKGPNLELLTKTLELS--EHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHK 218 (221)
T ss_pred HHHHHHHhcCCEEEEEECCccccCCCCCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhC
Confidence 11 245688888888876 79999999999999999988899999999998853
No 145
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=98.39 E-value=1.1e-05 Score=71.08 Aligned_cols=100 Identities=18% Similarity=0.081 Sum_probs=73.8
Q ss_pred HHHHHHHhcCCCEEE--eccCCHHHHHHHHHcCCCEEEEc-CCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH
Q 020636 216 DVKWLQTITKLPILV--KGVLTAEDARIAVQAGAAGIIVS-NHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 292 (323)
Q Consensus 216 ~i~~i~~~~~~pv~v--K~i~~~e~a~~~~~~Gad~i~vs-~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~ 292 (323)
.++.+++ .+.++++ =+..|++++..+.+.|+|.+.+. ++.+... +.+...+.++++.+.. ++|++++|||+ .
T Consensus 95 ~i~~~~~-~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~~~~~~~-~~~~~~~~i~~~~~~~--~~~i~~~GGI~-~ 169 (202)
T cd04726 95 AVKAAKK-YGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRGIDAQAA-GGWWPEDDLKKVKKLL--GVKVAVAGGIT-P 169 (202)
T ss_pred HHHHHHH-cCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCccccccc-CCCCCHHHHHHHHhhc--CCCEEEECCcC-H
Confidence 4555554 4666665 46688999888899999998873 2111111 1244567777776653 79999999996 9
Q ss_pred HHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 293 TDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 293 ~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
+++.+++..|||+|.+||.+...+++.+
T Consensus 170 ~~i~~~~~~Gad~vvvGsai~~~~d~~~ 197 (202)
T cd04726 170 DTLPEFKKAGADIVIVGRAITGAADPAE 197 (202)
T ss_pred HHHHHHHhcCCCEEEEeehhcCCCCHHH
Confidence 9999999999999999999988776644
No 146
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=98.37 E-value=4e-05 Score=66.67 Aligned_cols=174 Identities=22% Similarity=0.116 Sum_probs=112.7
Q ss_pred cHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCC---CceeEEeeecC---ChHHHHHHHHHHHHcCCcEEEEecCCC
Q 020636 87 PEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP---GIRFFQLYVYK---DRNVVAQLVRRAERAGFKAIALTVDTP 160 (323)
Q Consensus 87 ~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~---~~~~~QLy~~~---d~~~~~~~~~~a~~~G~~al~itvd~p 160 (323)
.+.-..+++.+.+.|+..++-.. ..++.+.+..+ -+..+++.... ..+...+.+++++++|++++.+.. |
T Consensus 12 ~~~~~~~~~~~~~~gv~gi~~~g--~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~--~ 87 (201)
T cd00945 12 LEDIAKLCDEAIEYGFAAVCVNP--GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVI--N 87 (201)
T ss_pred HHHHHHHHHHHHHhCCcEEEECH--HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEec--c
Confidence 34445788888888986654432 33444444332 24456654322 046667788899999999998753 2
Q ss_pred CCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHh--cCCCEEEecc---C-
Q 020636 161 RLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTI--TKLPILVKGV---L- 234 (323)
Q Consensus 161 ~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~--~~~pv~vK~i---~- 234 (323)
.. + ....+.+...+.++.+++. .++|+++... .
T Consensus 88 ~~----------~-------------------------------~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~ 126 (201)
T cd00945 88 IG----------S-------------------------------LKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLK 126 (201)
T ss_pred HH----------H-------------------------------HhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCC
Confidence 10 0 0000112234567777777 4899999865 2
Q ss_pred CHHHHH----HHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 235 TAEDAR----IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 235 ~~e~a~----~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
+.+... .+.+.|+|+|..+.... .+...++.+.++.+..+.++|+++.||+.+..++..++.+||+++++|
T Consensus 127 ~~~~~~~~~~~~~~~g~~~iK~~~~~~----~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 127 TADEIAKAARIAAEAGADFIKTSTGFG----GGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCCCC----CCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 455433 35689999999864211 122356677777776644679999999999999999999999999876
No 147
>PLN02411 12-oxophytodienoate reductase
Probab=98.36 E-value=5e-06 Score=81.03 Aligned_cols=106 Identities=11% Similarity=-0.028 Sum_probs=72.9
Q ss_pred ccCHHHHHHHHHhcC-CCEEEeccCC-----------HH----HHHHHHHc------CCCEEEEcCCCCC---CCC---C
Q 020636 211 SLSWKDVKWLQTITK-LPILVKGVLT-----------AE----DARIAVQA------GAAGIIVSNHGAR---QLD---Y 262 (323)
Q Consensus 211 ~~~~~~i~~i~~~~~-~pv~vK~i~~-----------~e----~a~~~~~~------Gad~i~vs~~gg~---~~~---~ 262 (323)
.+..|.|+.||+.++ -.|.+|.... .+ .++.+.+. |+|+|.||..... ... .
T Consensus 216 RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~ 295 (391)
T PLN02411 216 RFLMQVVQAVVSAIGADRVGVRVSPAIDHLDATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRH 295 (391)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEcccccccCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCccccc
Confidence 466889999999984 2477775420 11 23444432 5999999863211 000 0
Q ss_pred Ccc--hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEccccccCcchh
Q 020636 263 VPA--TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 263 ~~~--~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lG-Ad~V~iG~~~~~~~~~~ 319 (323)
... ......++++.+ ++|||+.||| +.+++.++|+.| ||.|.+||+|+.+|+|-
T Consensus 296 ~~~~~~~~~a~~ik~~v--~~pvi~~G~i-~~~~a~~~l~~g~aDlV~~gR~~iadPdl~ 352 (391)
T PLN02411 296 GSEEEEAQLMRTLRRAY--QGTFMCSGGF-TRELGMQAVQQGDADLVSYGRLFISNPDLV 352 (391)
T ss_pred CCccchhHHHHHHHHHc--CCCEEEECCC-CHHHHHHHHHcCCCCEEEECHHHHhCccHH
Confidence 111 113446677777 7899999999 679999999999 99999999999999874
No 148
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.36 E-value=2.4e-05 Score=70.31 Aligned_cols=171 Identities=13% Similarity=0.123 Sum_probs=110.9
Q ss_pred EEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccC--CCCccccccccccccCCCccccchhhHHHH
Q 020636 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT--LPPFLTLKNFQGLDLGKMDEANDSGLAAYV 204 (323)
Q Consensus 127 ~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (323)
+=+....+.+...++++.+.+.|++.+-||.++|..-..-+.++..|. .| .+. .+. +.+.+ ........
T Consensus 18 i~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p-~~~----vGa--GTVl~--~e~a~~a~ 88 (222)
T PRK07114 18 VPVFYHADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELP-GMI----LGV--GSIVD--AATAALYI 88 (222)
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCC-CeE----Eee--EeCcC--HHHHHHHH
Confidence 334446788888888888899999999999999875444444443321 11 111 010 00000 00000111
Q ss_pred h----hccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCC
Q 020636 205 A----GQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGR 280 (323)
Q Consensus 205 ~----~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ 280 (323)
. ....|.++.+.++..++ .++|+ +=|++|+.|+..+.++|++.|.+.-.+ ..+ ...++.+..-++ .
T Consensus 89 ~aGA~FiVsP~~~~~v~~~~~~-~~i~~-iPG~~TpsEi~~A~~~Ga~~vKlFPA~----~~G---~~~ikal~~p~p-~ 158 (222)
T PRK07114 89 QLGANFIVTPLFNPDIAKVCNR-RKVPY-SPGCGSLSEIGYAEELGCEIVKLFPGS----VYG---PGFVKAIKGPMP-W 158 (222)
T ss_pred HcCCCEEECCCCCHHHHHHHHH-cCCCE-eCCCCCHHHHHHHHHCCCCEEEECccc----ccC---HHHHHHHhccCC-C
Confidence 0 11246677778887765 46654 457899999999999999999996321 012 344445444444 7
Q ss_pred CeEEEecCCCC-HHHHHHHHHcCCCEEEEccccccCc
Q 020636 281 IPVFLDGGVRR-GTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 281 ~pvia~GGI~~-~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
++++..|||.- .+++...+.+|+.+|++|+-++...
T Consensus 159 i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~~~~ 195 (222)
T PRK07114 159 TKIMPTGGVEPTEENLKKWFGAGVTCVGMGSKLIPKE 195 (222)
T ss_pred CeEEeCCCCCcchhcHHHHHhCCCEEEEEChhhcCcc
Confidence 99999999995 5889999999999999999886433
No 149
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.36 E-value=1.6e-05 Score=72.55 Aligned_cols=97 Identities=13% Similarity=0.028 Sum_probs=64.2
Q ss_pred HHHHHHHhcCCCEEEe--ccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 020636 216 DVKWLQTITKLPILVK--GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (323)
Q Consensus 216 ~i~~i~~~~~~pv~vK--~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~ 293 (323)
.++.+++. ++..++- -..+.+..+...+..-..++++-.+++.........+.+.++++... +.||+++|||++++
T Consensus 121 ~~~~~~~~-Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~~-~~~i~v~gGI~~~e 198 (244)
T PRK13125 121 YVEIIKNK-GLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPATGVPLPVSVERNIKRVRNLVG-NKYLVVGFGLDSPE 198 (244)
T ss_pred HHHHHHHc-CCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCCCCCchHHHHHHHHHHHHhcC-CCCEEEeCCcCCHH
Confidence 34555553 4443333 22457777887777655665553333211112223456777776653 47899999999999
Q ss_pred HHHHHHHcCCCEEEEcccccc
Q 020636 294 DVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 294 di~kal~lGAd~V~iG~~~~~ 314 (323)
++.+++..|||++.+|+.++.
T Consensus 199 ~i~~~~~~gaD~vvvGSai~~ 219 (244)
T PRK13125 199 DARDALSAGADGVVVGTAFIE 219 (244)
T ss_pred HHHHHHHcCCCEEEECHHHHH
Confidence 999999999999999999874
No 150
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=98.34 E-value=5.6e-06 Score=73.38 Aligned_cols=85 Identities=27% Similarity=0.265 Sum_probs=65.2
Q ss_pred cCCHHHHHHHHHcCCCEEEEcCCCCCC--CCCC-cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 233 VLTAEDARIAVQAGAAGIIVSNHGARQ--LDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 233 i~~~e~a~~~~~~Gad~i~vs~~gg~~--~~~~-~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
+.|.+++..+.+.|+|+|.++....+. .... +..++.+.++++..+ ++||++.||| +.+++.+++++||++|.+|
T Consensus 111 ~~t~~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~g 188 (212)
T PRK00043 111 THTLEEAAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVG-DIPIVAIGGI-TPENAPEVLEAGADGVAVV 188 (212)
T ss_pred CCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC-CCCEEEECCc-CHHHHHHHHHcCCCEEEEe
Confidence 468899999999999999886422111 1111 123788888887762 3999999999 7899999999999999999
Q ss_pred cccccCcchh
Q 020636 310 IMPCQCPLTE 319 (323)
Q Consensus 310 ~~~~~~~~~~ 319 (323)
+.+..+++..
T Consensus 189 s~i~~~~d~~ 198 (212)
T PRK00043 189 SAITGAEDPE 198 (212)
T ss_pred HHhhcCCCHH
Confidence 9998776543
No 151
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=98.33 E-value=4.5e-06 Score=75.28 Aligned_cols=86 Identities=20% Similarity=0.313 Sum_probs=67.4
Q ss_pred ccCCHHHHHHHHHcCCCEEEEcCCC-CCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 232 GVLTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 232 ~i~~~e~a~~~~~~Gad~i~vs~~g-g~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
...++--|+++.++||..|.--+.. |+ ..+..+...|..|.+.. ++||+.++||.+++|+.+++++|||+|++.+
T Consensus 144 ~~~D~v~a~rLed~Gc~aVMPlgsPIGS--g~Gl~n~~~l~~i~e~~--~vpVivdAGIgt~sDa~~AmElGaDgVL~nS 219 (267)
T CHL00162 144 INADPMLAKHLEDIGCATVMPLGSPIGS--GQGLQNLLNLQIIIENA--KIPVIIDAGIGTPSEASQAMELGASGVLLNT 219 (267)
T ss_pred CCCCHHHHHHHHHcCCeEEeeccCcccC--CCCCCCHHHHHHHHHcC--CCcEEEeCCcCCHHHHHHHHHcCCCEEeecc
Confidence 3467888999999999998753211 11 11344566777777765 7999999999999999999999999999999
Q ss_pred ccccCcchhhh
Q 020636 311 MPCQCPLTEKI 321 (323)
Q Consensus 311 ~~~~~~~~~~~ 321 (323)
+....++..++
T Consensus 220 aIakA~dP~~m 230 (267)
T CHL00162 220 AVAQAKNPEQM 230 (267)
T ss_pred eeecCCCHHHH
Confidence 99887776554
No 152
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=98.32 E-value=3.4e-06 Score=81.24 Aligned_cols=97 Identities=21% Similarity=0.265 Sum_probs=71.4
Q ss_pred CCccCHHHHHHHHHhcCCCEEEeccC----CHHHHHHHHHcCCCEEEEcCCCCCCCC-CCcchHHHHHHHHHHhcCCCeE
Q 020636 209 DRSLSWKDVKWLQTITKLPILVKGVL----TAEDARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 209 ~~~~~~~~i~~i~~~~~~pv~vK~i~----~~e~a~~~~~~Gad~i~vs~~gg~~~~-~~~~~~~~l~~i~~~~~~~~pv 283 (323)
+|++..+.++++++.. +.+|... ..+-++.++++|+|.|++++..-.+.+ .+...+..+.++.+.+ ++||
T Consensus 117 ~p~l~~~ii~~vr~a~---VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~--~IPV 191 (369)
T TIGR01304 117 KPELLGERIAEVRDSG---VITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL--DVPV 191 (369)
T ss_pred ChHHHHHHHHHHHhcc---eEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC--CCCE
Confidence 4555566778888752 7777643 346689999999999999764322222 1223355667777766 7999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEccc
Q 020636 284 FLDGGVRRGTDVFKALALGASGIFVSIM 311 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lGAd~V~iG~~ 311 (323)
|+ |+|.+.+|+.+++.+|||+|++|+.
T Consensus 192 I~-G~V~t~e~A~~~~~aGaDgV~~G~g 218 (369)
T TIGR01304 192 IA-GGVNDYTTALHLMRTGAAGVIVGPG 218 (369)
T ss_pred EE-eCCCCHHHHHHHHHcCCCEEEECCC
Confidence 98 9999999999999999999998863
No 153
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=98.32 E-value=1.1e-05 Score=71.74 Aligned_cols=90 Identities=28% Similarity=0.320 Sum_probs=62.3
Q ss_pred CHHHHHHHHHhcCCCEEEecc-----CCHHH----HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeE
Q 020636 213 SWKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~i-----~~~e~----a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
.++++.++++... .+.+|.+ ++.+. ++.+.++|+|.|.++. |.. ....+++.+..+.+.++.++||
T Consensus 103 ~~~ei~~v~~~~~-g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsT-G~~---~~~at~~~v~~~~~~~~~~v~i 177 (203)
T cd00959 103 VYEEIAAVVEACG-GAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTST-GFG---PGGATVEDVKLMKEAVGGRVGV 177 (203)
T ss_pred HHHHHHHHHHhcC-CCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCC-CCC---CCCCCHHHHHHHHHHhCCCceE
Confidence 4567888887764 2333323 44444 6778899999999973 211 1234455444444555457999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEE
Q 020636 284 FLDGGVRRGTDVFKALALGASGIF 307 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lGAd~V~ 307 (323)
.++|||+|.+++++++++||+.++
T Consensus 178 k~aGGikt~~~~l~~~~~g~~riG 201 (203)
T cd00959 178 KAAGGIRTLEDALAMIEAGATRIG 201 (203)
T ss_pred EEeCCCCCHHHHHHHHHhChhhcc
Confidence 999999999999999999998764
No 154
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=98.31 E-value=3.8e-05 Score=75.86 Aligned_cols=101 Identities=21% Similarity=0.188 Sum_probs=73.0
Q ss_pred HHHHHHHhcCCCEEEe--ccCC-HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH
Q 020636 216 DVKWLQTITKLPILVK--GVLT-AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 292 (323)
Q Consensus 216 ~i~~i~~~~~~pv~vK--~i~~-~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~ 292 (323)
.++.+++ .+.++++. ...+ .+.++.+.+.|+|+|.++. |.......+..++.++++++.+ ++||++.||| +.
T Consensus 99 ~i~~a~~-~G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~p-g~~~~~~~~~~~~~l~~l~~~~--~iPI~a~GGI-~~ 173 (430)
T PRK07028 99 AVRAARK-YGVRLMADLINVPDPVKRAVELEELGVDYINVHV-GIDQQMLGKDPLELLKEVSEEV--SIPIAVAGGL-DA 173 (430)
T ss_pred HHHHHHH-cCCEEEEEecCCCCHHHHHHHHHhcCCCEEEEEe-ccchhhcCCChHHHHHHHHhhC--CCcEEEECCC-CH
Confidence 4555555 46666664 2223 5667888999999997752 2211111234567788887766 6999999999 68
Q ss_pred HHHHHHHHcCCCEEEEccccccCcchhhh
Q 020636 293 TDVFKALALGASGIFVSIMPCQCPLTEKI 321 (323)
Q Consensus 293 ~di~kal~lGAd~V~iG~~~~~~~~~~~~ 321 (323)
+.+.++++.||+++.+||.++..+++++.
T Consensus 174 ~n~~~~l~aGAdgv~vGsaI~~~~d~~~~ 202 (430)
T PRK07028 174 ETAAKAVAAGADIVIVGGNIIKSADVTEA 202 (430)
T ss_pred HHHHHHHHcCCCEEEEChHHcCCCCHHHH
Confidence 99999999999999999999988776654
No 155
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=98.30 E-value=8.1e-06 Score=70.97 Aligned_cols=84 Identities=23% Similarity=0.184 Sum_probs=65.4
Q ss_pred cCCHHHHHHHHHcCCCEEEEcCCCCCC-CCC--CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 233 VLTAEDARIAVQAGAAGIIVSNHGARQ-LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 233 i~~~e~a~~~~~~Gad~i~vs~~gg~~-~~~--~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
+.+.++++.+.+.|+|+|.++...... ..+ .+..++.+.++++.. ++||++.|||. .+++.+++.+||++|.+|
T Consensus 102 ~~t~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pv~a~GGi~-~~~i~~~~~~Ga~~i~~g 178 (196)
T cd00564 102 THSLEEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELV--EIPVVAIGGIT-PENAAEVLAAGADGVAVI 178 (196)
T ss_pred CCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCCC-HHHHHHHHHcCCCEEEEe
Confidence 467899999999999999986432111 111 345677888887765 79999999995 699999999999999999
Q ss_pred cccccCcchh
Q 020636 310 IMPCQCPLTE 319 (323)
Q Consensus 310 ~~~~~~~~~~ 319 (323)
+.++..++..
T Consensus 179 ~~i~~~~~~~ 188 (196)
T cd00564 179 SAITGADDPA 188 (196)
T ss_pred hHhhcCCCHH
Confidence 9998876644
No 156
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=98.30 E-value=1.6e-05 Score=73.59 Aligned_cols=93 Identities=24% Similarity=0.288 Sum_probs=67.6
Q ss_pred HHHHHHhcCCCEEEe---------ccCCHHH----HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeE
Q 020636 217 VKWLQTITKLPILVK---------GVLTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 217 i~~i~~~~~~pv~vK---------~i~~~e~----a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
+.++...++.|+++- ...+.+. ++.+.+.|||+|..+-. ...+.+.++.+.. ++||
T Consensus 131 v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~~~---------~~~~~l~~~~~~~--~ipV 199 (267)
T PRK07226 131 VAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKTNYT---------GDPESFREVVEGC--PVPV 199 (267)
T ss_pred HHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEeeCCC---------CCHHHHHHHHHhC--CCCE
Confidence 334444567887663 1123333 67788999999988632 1356777777655 7999
Q ss_pred EEecCCC--CHHHHHHHH----HcCCCEEEEccccccCcchhh
Q 020636 284 FLDGGVR--RGTDVFKAL----ALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 284 ia~GGI~--~~~di~kal----~lGAd~V~iG~~~~~~~~~~~ 320 (323)
+++|||+ |.+++++.+ ++||+++.+|+.++..++-.+
T Consensus 200 ~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~p~~ 242 (267)
T PRK07226 200 VIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHEDPEA 242 (267)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCCHHH
Confidence 9999999 778777775 899999999999988877544
No 157
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=98.30 E-value=1e-05 Score=71.88 Aligned_cols=107 Identities=32% Similarity=0.407 Sum_probs=79.4
Q ss_pred CHHHHHHHHHhcCCCEEEec-cCCHHHHHHHHHcCCCEEEEcC---------C------------CCCCC----------
Q 020636 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN---------H------------GARQL---------- 260 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~Gad~i~vs~---------~------------gg~~~---------- 260 (323)
+.+.|++|-+.+.+||..|. +...-+|+.+...|+|.|.=|- | |.|.+
T Consensus 65 Dp~~i~eim~aVsIPVMAKvRIGH~~EA~iLealgVD~IDESEVLTPAD~~~Hi~K~~FtVPFVcGarnLgEAlRRI~EG 144 (296)
T COG0214 65 DPKMIEEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMIDESEVLTPADEEFHINKWKFTVPFVCGARNLGEALRRISEG 144 (296)
T ss_pred CHHHHHHHHHhcccceeeeeecchhHHHHHHHHhCCCccccccccCCCchhhhcchhhcccceecCcCcHHHHHHHHhhh
Confidence 45678889999999999996 4788899999999999996431 1 11110
Q ss_pred -------------C-------------------------------CCcchHHHHHHHHHHhcCCCeE--EEecCCCCHHH
Q 020636 261 -------------D-------------------------------YVPATIMALEEVVKATQGRIPV--FLDGGVRRGTD 294 (323)
Q Consensus 261 -------------~-------------------------------~~~~~~~~l~~i~~~~~~~~pv--ia~GGI~~~~d 294 (323)
+ .-..+++++.++.+. +++|| ++.|||.|+.|
T Consensus 145 AaMIRTKGEaGTGnv~eAVrHmr~i~~eI~~l~~~~edel~~~Ak~~~~p~elv~~~~~~--grLPVvnFAAGGvATPAD 222 (296)
T COG0214 145 AAMIRTKGEAGTGNVVEAVRHMRKINGEIRRLQSMTEDELYVVAKELQAPYELVKEVAKL--GRLPVVNFAAGGVATPAD 222 (296)
T ss_pred HHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHhCChHHHHHHHHHh--CCCCeEeecccCcCChhH
Confidence 0 001234555555443 36666 78999999999
Q ss_pred HHHHHHcCCCEEEEccccccCcchhhh
Q 020636 295 VFKALALGASGIFVSIMPCQCPLTEKI 321 (323)
Q Consensus 295 i~kal~lGAd~V~iG~~~~~~~~~~~~ 321 (323)
+.-++.+|||+|.+|+.+++.++-++.
T Consensus 223 AALMM~LGadGVFVGSGIFKS~~P~~~ 249 (296)
T COG0214 223 AALMMQLGADGVFVGSGIFKSSNPEKR 249 (296)
T ss_pred HHHHHHhCCCeEEecccccCCCCHHHH
Confidence 999999999999999999998776654
No 158
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.29 E-value=3.1e-05 Score=71.27 Aligned_cols=46 Identities=17% Similarity=0.209 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 267 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 267 ~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+.+.++++.. ++||++.+||++++|+.+++.. ||+|.+|++|+..
T Consensus 189 ~~~i~~vk~~~--~~pv~vGfGI~~~e~v~~~~~~-ADGviVGSaiv~~ 234 (258)
T PRK13111 189 AELVARLKAHT--DLPVAVGFGISTPEQAAAIAAV-ADGVIVGSALVKI 234 (258)
T ss_pred HHHHHHHHhcC--CCcEEEEcccCCHHHHHHHHHh-CCEEEEcHHHHHH
Confidence 35777777766 7999999999999999999975 9999999998643
No 159
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=9.3e-06 Score=77.71 Aligned_cols=207 Identities=18% Similarity=0.208 Sum_probs=138.0
Q ss_pred cccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCC--CCHHHHHh---------------------cCC--
Q 020636 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST--SSVEEVAS---------------------TGP-- 122 (323)
Q Consensus 68 ~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~--~~~eei~~---------------------~~~-- 122 (323)
..++.-+++|||- + -|++++.-.|-++|.-++.+.--. +-++-+.. ..|
T Consensus 7 l~y~nk~iLApMv--r----~G~lpmrLLal~~Gadlv~~peIVdkKLIe~ir~~NealgtIDfv~p~~~~vvfr~~~~e 80 (477)
T KOG2334|consen 7 LFYRNKLILAPMV--R----AGELPMRLLALQYGADLVYTPEIVDKKLIECIRVENEALGTIDFVDPSDSTVVFRTCPAE 80 (477)
T ss_pred hhhcCcEeeehHH--H----hccchHHHHHHHhccceecChhhhhHHHHhccccccccccceeeecCCcceEEEEechhh
Confidence 3456778999983 2 378899999999999998886311 11111110 011
Q ss_pred -CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhH
Q 020636 123 -GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 201 (323)
Q Consensus 123 -~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (323)
....||+- ..+.+...+..+.+ ...+.+++++++||-. |+.-. +-++++
T Consensus 81 ~~rlilQ~g-T~sa~lA~e~A~lv-~nDvsgidiN~gCpK~----------fSi~~-----------------gmgaal- 130 (477)
T KOG2334|consen 81 NSRLILQIG-TASAELALEAAKLV-DNDVSGIDINMGCPKE----------FSIHG-----------------GMGAAL- 130 (477)
T ss_pred cCeEEEEec-CCcHHHHHHHHHHh-hcccccccccCCCCCc----------ccccc-----------------CCCchh-
Confidence 34678874 35555444433333 3356789999999852 32110 111111
Q ss_pred HHHhhccCCccCHHHHHHHHHhcCCCEEEecc------CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHH
Q 020636 202 AYVAGQIDRSLSWKDVKWLQTITKLPILVKGV------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVK 275 (323)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i------~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~ 275 (323)
-.+|+.-...+..+.+...+|+..|.. .+.+-.+++.+.|+.+|.|+.+....-..-+.+-+.+.++.+
T Consensus 131 -----Lt~~dkl~~IL~sLvk~~~vpvtckIR~L~s~edtL~lv~ri~~tgi~ai~vh~rt~d~r~~~~~~~~~i~~i~~ 205 (477)
T KOG2334|consen 131 -----LTDPDKLVAILYSLVKGNKVPVTCKIRLLDSKEDTLKLVKRICATGIAAITVHCRTRDERNQEPATKDYIREIAQ 205 (477)
T ss_pred -----hcCHHHHHHHHHHHHhcCcccceeEEEecCCcccHHHHHHHHHhcCCceEEEEeeccccCCCCCCCHHHHHHHHH
Confidence 125566667788888888999999964 345668888999999999954322111234667888999999
Q ss_pred HhcCCCeEEEecCCCC---HHHHHHHHH-cCCCEEEEccccccCc
Q 020636 276 ATQGRIPVFLDGGVRR---GTDVFKALA-LGASGIFVSIMPCQCP 316 (323)
Q Consensus 276 ~~~~~~pvia~GGI~~---~~di~kal~-lGAd~V~iG~~~~~~~ 316 (323)
.++ .+|||+.||..+ ..|+.+... .|++.||+.|....+|
T Consensus 206 ~~~-~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~~n~ 249 (477)
T KOG2334|consen 206 ACQ-MVPVIVNGGSMDIEQYSDIEDFQEKTGADSVMIARAAESNP 249 (477)
T ss_pred Hhc-cceEeeccchhhHHhhhhHHHHHHHhccchhhhhHhhhcCC
Confidence 884 399999999999 889998876 6999999999766554
No 160
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=98.28 E-value=5e-06 Score=74.24 Aligned_cols=82 Identities=18% Similarity=0.235 Sum_probs=59.0
Q ss_pred ccCCHHHHHHHHHcCCCEEEEcCCC-CCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 232 GVLTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 232 ~i~~~e~a~~~~~~Gad~i~vs~~g-g~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
...++-.++++.++||..|..-+.. |+ ..+..+...|..+.+.. ++|||+|+||.++.|+.+|+++|||+|.+-+
T Consensus 130 ~~~D~v~akrL~d~GcaavMPlgsPIGS--g~Gi~n~~~l~~i~~~~--~vPvIvDAGiG~pSdaa~AMElG~daVLvNT 205 (247)
T PF05690_consen 130 CTDDPVLAKRLEDAGCAAVMPLGSPIGS--GRGIQNPYNLRIIIERA--DVPVIVDAGIGTPSDAAQAMELGADAVLVNT 205 (247)
T ss_dssp E-S-HHHHHHHHHTT-SEBEEBSSSTTT-----SSTHHHHHHHHHHG--SSSBEEES---SHHHHHHHHHTT-SEEEESH
T ss_pred CCCCHHHHHHHHHCCCCEEEeccccccc--CcCCCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHcCCceeehhh
Confidence 3467888999999999999764321 11 12345667888888888 8999999999999999999999999999999
Q ss_pred ccccCcc
Q 020636 311 MPCQCPL 317 (323)
Q Consensus 311 ~~~~~~~ 317 (323)
+.....+
T Consensus 206 AiA~A~d 212 (247)
T PF05690_consen 206 AIAKAKD 212 (247)
T ss_dssp HHHTSSS
T ss_pred HHhccCC
Confidence 8866544
No 161
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.26 E-value=1.2e-05 Score=74.41 Aligned_cols=90 Identities=16% Similarity=0.136 Sum_probs=72.2
Q ss_pred HHHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhc---CCCeEEEecCC
Q 020636 214 WKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGV 289 (323)
Q Consensus 214 ~~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~~pvia~GGI 289 (323)
.+.++.+|+..+ ...+.-.+.+.|+++.+.++|+|.|.+.| .+.+.+.++.+..+ .++.+.++|||
T Consensus 169 ~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~GaDiI~LDn----------~~~e~l~~~v~~~~~~~~~~~ieAsGgI 238 (273)
T PRK05848 169 KEFIQHARKNIPFTAKIEIECESLEEAKNAMNAGADIVMCDN----------MSVEEIKEVVAYRNANYPHVLLEASGNI 238 (273)
T ss_pred HHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHHhhccCCCeEEEEECCC
Confidence 456888888775 24455578999999999999999998765 35566666666543 26779999999
Q ss_pred CCHHHHHHHHHcCCCEEEEcccccc
Q 020636 290 RRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 290 ~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
+.+.+.++..+|+|.+.+|++...
T Consensus 239 -t~~ni~~ya~~GvD~IsvG~l~~s 262 (273)
T PRK05848 239 -TLENINAYAKSGVDAISSGSLIHQ 262 (273)
T ss_pred -CHHHHHHHHHcCCCEEEeChhhcC
Confidence 999999999999999999997763
No 162
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.25 E-value=5.6e-06 Score=74.72 Aligned_cols=81 Identities=30% Similarity=0.385 Sum_probs=66.4
Q ss_pred CHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 235 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 235 ~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
..+.|+.+.+.|+|.+.+....+ ...+.+..++.+.++.+.+ ++||++.|||++.+|+.+++..|||.|++|+.++.
T Consensus 31 p~~~a~~~~~~g~d~l~v~dl~~-~~~~~~~~~~~i~~i~~~~--~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~ 107 (234)
T cd04732 31 PVEVAKKWEEAGAKWLHVVDLDG-AKGGEPVNLELIEEIVKAV--GIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVK 107 (234)
T ss_pred HHHHHHHHHHcCCCEEEEECCCc-cccCCCCCHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHh
Confidence 34668888899999999864322 1122456788999998887 79999999999999999999999999999999988
Q ss_pred Ccch
Q 020636 315 CPLT 318 (323)
Q Consensus 315 ~~~~ 318 (323)
+|++
T Consensus 108 dp~~ 111 (234)
T cd04732 108 NPEL 111 (234)
T ss_pred ChHH
Confidence 7753
No 163
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=98.24 E-value=1.8e-05 Score=71.64 Aligned_cols=88 Identities=25% Similarity=0.330 Sum_probs=65.4
Q ss_pred HhcCCCEEEecc---------CCHHH----HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecC
Q 020636 222 TITKLPILVKGV---------LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (323)
Q Consensus 222 ~~~~~pv~vK~i---------~~~e~----a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GG 288 (323)
+.++.|+++=.. .+.++ ++.+.++|+|+|.+++. ..++.+.++.+.+ ++||++.||
T Consensus 119 ~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~~---------~~~~~~~~i~~~~--~~pvv~~GG 187 (235)
T cd00958 119 HKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKYT---------GDAESFKEVVEGC--PVPVVIAGG 187 (235)
T ss_pred HHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecCC---------CCHHHHHHHHhcC--CCCEEEeCC
Confidence 446788876321 22333 45588999999998532 1467788887776 799999999
Q ss_pred C--CCHHH----HHHHHHcCCCEEEEccccccCcchhh
Q 020636 289 V--RRGTD----VFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 289 I--~~~~d----i~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
+ .+.+| +.+++.+||++|.+||.++..++-.+
T Consensus 188 ~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~~dp~~ 225 (235)
T cd00958 188 PKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQRPDPVA 225 (235)
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEechhhhcCCCHHH
Confidence 7 67766 67778999999999999998887544
No 164
>PRK04302 triosephosphate isomerase; Provisional
Probab=98.23 E-value=5.3e-05 Score=68.19 Aligned_cols=103 Identities=24% Similarity=0.287 Sum_probs=69.0
Q ss_pred HHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCC--CC--CCCCC-cchH-HHHHHHHHHhcCCCeEEEecCCC
Q 020636 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG--AR--QLDYV-PATI-MALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 217 i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~g--g~--~~~~~-~~~~-~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
++..++ .++.+++ .+.+.++++.+.+.|.|.|.+-..+ |+ ..... +..+ +.+..+++.. .++||++.|||+
T Consensus 107 v~~a~~-~Gl~~I~-~v~~~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~-~~~pvi~GggI~ 183 (223)
T PRK04302 107 VERAKK-LGLESVV-CVNNPETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVN-PDVKVLCGAGIS 183 (223)
T ss_pred HHHHHH-CCCeEEE-EcCCHHHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhcc-CCCEEEEECCCC
Confidence 444444 3554443 4567788888889999988764321 21 11111 1122 2233333322 368999999999
Q ss_pred CHHHHHHHHHcCCCEEEEccccccCcchhhhc
Q 020636 291 RGTDVFKALALGASGIFVSIMPCQCPLTEKIN 322 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~iG~~~~~~~~~~~~~ 322 (323)
+++++..+++.|||+|.+|++++..+++.++.
T Consensus 184 ~~e~~~~~~~~gadGvlVGsa~l~~~~~~~~~ 215 (223)
T PRK04302 184 TGEDVKAALELGADGVLLASGVVKAKDPEAAL 215 (223)
T ss_pred CHHHHHHHHcCCCCEEEEehHHhCCcCHHHHH
Confidence 99999999999999999999999998887653
No 165
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.22 E-value=6.3e-06 Score=79.48 Aligned_cols=99 Identities=19% Similarity=0.236 Sum_probs=70.5
Q ss_pred CCccCHHHHHHHHHhcCCCEEEecc--CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcc-hHHHHHHHHHHhcCCCeEEE
Q 020636 209 DRSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFL 285 (323)
Q Consensus 209 ~~~~~~~~i~~i~~~~~~pv~vK~i--~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~pvia 285 (323)
+|++..+.++.+++. ++++.++.. ...+-++.+.++|+|.|+++++...+.+.... .+..+.++.+.. ++|||+
T Consensus 116 ~p~l~~~iv~~~~~~-~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~--~ipVIa 192 (368)
T PRK08649 116 KPELITERIAEIRDA-GVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL--DVPVIV 192 (368)
T ss_pred CHHHHHHHHHHHHhC-eEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC--CCCEEE
Confidence 344556678888875 455544432 34577899999999999996543222222222 344456666655 799999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEccc
Q 020636 286 DGGVRRGTDVFKALALGASGIFVSIM 311 (323)
Q Consensus 286 ~GGI~~~~di~kal~lGAd~V~iG~~ 311 (323)
|+|.|.+++.+++.+|||+|++|+.
T Consensus 193 -G~V~t~e~A~~l~~aGAD~V~VG~G 217 (368)
T PRK08649 193 -GGCVTYTTALHLMRTGAAGVLVGIG 217 (368)
T ss_pred -eCCCCHHHHHHHHHcCCCEEEECCC
Confidence 9999999999999999999999964
No 166
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=98.22 E-value=1.1e-05 Score=73.94 Aligned_cols=97 Identities=23% Similarity=0.226 Sum_probs=76.0
Q ss_pred CHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcC-------------------CC--------------C--
Q 020636 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN-------------------HG--------------A-- 257 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~-------------------~g--------------g-- 257 (323)
+.+.++.|++ +++||.+.|-...++++.++++||+.|++.. +| |
T Consensus 72 n~~~i~~i~~-~~~~vqvGGGIR~e~i~~~l~~Ga~rViigT~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~ 150 (262)
T PLN02446 72 LAAALEALRA-YPGGLQVGGGVNSENAMSYLDAGASHVIVTSYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRKKDGRY 150 (262)
T ss_pred cHHHHHHHHh-CCCCEEEeCCccHHHHHHHHHcCCCEEEEchHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEecCCCE
Confidence 3667888888 8899999964335999999999999998842 11 1
Q ss_pred C----------CC------------------------CC--CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHc
Q 020636 258 R----------QL------------------------DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 301 (323)
Q Consensus 258 ~----------~~------------------------~~--~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~l 301 (323)
+ .. |+ ..+.++++.++.+.+ ++|||++|||++.+|+.+...+
T Consensus 151 ~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~rDGtl~G~d~el~~~l~~~~--~ipVIASGGv~sleDi~~L~~~ 228 (262)
T PLN02446 151 YVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVDVEGKRLGIDEELVALLGEHS--PIPVTYAGGVRSLDDLERVKVA 228 (262)
T ss_pred EEEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEcCCCcccCCCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHc
Confidence 0 00 22 245678888888876 8999999999999999999888
Q ss_pred --CCCEEEEcccc
Q 020636 302 --GASGIFVSIMP 312 (323)
Q Consensus 302 --GAd~V~iG~~~ 312 (323)
|..+|.+|++|
T Consensus 229 g~g~~gvIvGkAl 241 (262)
T PLN02446 229 GGGRVDVTVGSAL 241 (262)
T ss_pred CCCCEEEEEEeeH
Confidence 57899999998
No 167
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.21 E-value=1.6e-05 Score=72.14 Aligned_cols=98 Identities=17% Similarity=0.086 Sum_probs=72.8
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcCC---------------CCCC----C------------
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSNH---------------GARQ----L------------ 260 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~~---------------gg~~----~------------ 260 (323)
+.+.++++.+....|+.+. |+.+.++++.+.+.|++.|++... |+.+ +
T Consensus 61 n~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~g 140 (232)
T PRK13586 61 NEMYIKEISKIGFDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFTNFNLFHDIVREIGSNRVLVSIDYDNTKRVLIRG 140 (232)
T ss_pred hHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEccC
Confidence 4577888887443599888 579999999999999999987321 1100 0
Q ss_pred ------------------------------CC--CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEE
Q 020636 261 ------------------------------DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFV 308 (323)
Q Consensus 261 ------------------------------~~--~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~i 308 (323)
|+ ..++++++..+.+. ..|++++|||++.+|+.++..+|+++|.+
T Consensus 141 w~~~~~~~~e~~~~l~~~g~~~ii~tdI~~dGt~~G~d~el~~~~~~~---~~~viasGGv~s~~Dl~~l~~~G~~gviv 217 (232)
T PRK13586 141 WKEKSMEVIDGIKKVNELELLGIIFTYISNEGTTKGIDYNVKDYARLI---RGLKEYAGGVSSDADLEYLKNVGFDYIIV 217 (232)
T ss_pred CeeCCCCHHHHHHHHHhcCCCEEEEecccccccCcCcCHHHHHHHHhC---CCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 11 13455566555443 34699999999999999999999999999
Q ss_pred ccccc
Q 020636 309 SIMPC 313 (323)
Q Consensus 309 G~~~~ 313 (323)
|+++.
T Consensus 218 g~Aly 222 (232)
T PRK13586 218 GMAFY 222 (232)
T ss_pred ehhhh
Confidence 99985
No 168
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=98.20 E-value=2.8e-05 Score=68.54 Aligned_cols=171 Identities=19% Similarity=0.238 Sum_probs=102.9
Q ss_pred ecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHh----h
Q 020636 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA----G 206 (323)
Q Consensus 131 ~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 206 (323)
...+.+...++++.+-+.|++.+-||.++|..-.--+.++..+ |. +.+ + .+.+.+. ........ .
T Consensus 15 r~~~~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~--p~-~~v----G--AGTV~~~--e~a~~a~~aGA~F 83 (196)
T PF01081_consen 15 RGDDPEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEF--PD-LLV----G--AGTVLTA--EQAEAAIAAGAQF 83 (196)
T ss_dssp TTSSGGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHH--TT-SEE----E--EES--SH--HHHHHHHHHT-SE
T ss_pred EcCCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHC--CC-Cee----E--EEeccCH--HHHHHHHHcCCCE
Confidence 3566777778888888899999999999875332223344444 21 110 1 0110000 00000110 1
Q ss_pred ccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEe
Q 020636 207 QIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 286 (323)
Q Consensus 207 ~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~ 286 (323)
...|.++.+.+++.++. ++|+ +=|++|+.|+..+.++|++.|.+.-.+- ..-...++.++.-++ +++++..
T Consensus 84 ivSP~~~~~v~~~~~~~-~i~~-iPG~~TptEi~~A~~~G~~~vK~FPA~~------~GG~~~ik~l~~p~p-~~~~~pt 154 (196)
T PF01081_consen 84 IVSPGFDPEVIEYAREY-GIPY-IPGVMTPTEIMQALEAGADIVKLFPAGA------LGGPSYIKALRGPFP-DLPFMPT 154 (196)
T ss_dssp EEESS--HHHHHHHHHH-TSEE-EEEESSHHHHHHHHHTT-SEEEETTTTT------TTHHHHHHHHHTTTT-T-EEEEB
T ss_pred EECCCCCHHHHHHHHHc-CCcc-cCCcCCHHHHHHHHHCCCCEEEEecchh------cCcHHHHHHHhccCC-CCeEEEc
Confidence 12366777788877764 6654 5578999999999999999999953210 111345555554444 7999999
Q ss_pred cCCCCHHHHHHHHHcCCCEEEEccccccCc-----chhhhc
Q 020636 287 GGVRRGTDVFKALALGASGIFVSIMPCQCP-----LTEKIN 322 (323)
Q Consensus 287 GGI~~~~di~kal~lGAd~V~iG~~~~~~~-----~~~~~~ 322 (323)
|||.. +++...+.+|+.+|++|+.+.... +|.+|.
T Consensus 155 GGV~~-~N~~~~l~ag~~~vg~Gs~L~~~~~i~~~~~~~I~ 194 (196)
T PF01081_consen 155 GGVNP-DNLAEYLKAGAVAVGGGSWLFPKDLIAAGDWDEIT 194 (196)
T ss_dssp SS--T-TTHHHHHTSTTBSEEEESGGGSHHHHHTT-HHHHH
T ss_pred CCCCH-HHHHHHHhCCCEEEEECchhcCHHHHhcCCHHHHh
Confidence 99986 789999999999999999887655 555553
No 169
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=98.19 E-value=5.2e-05 Score=75.03 Aligned_cols=185 Identities=14% Similarity=0.089 Sum_probs=109.0
Q ss_pred HHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHh---hccCCCCccccccc-ccccc
Q 020636 114 VEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIK---NRFTLPPFLTLKNF-QGLDL 189 (323)
Q Consensus 114 ~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~---~~~~~~~~~~~~~~-~~~~~ 189 (323)
+.|+.++.|....+ ....|+. ++.+.. +.|+.+|-|-.|...++-...+++ ....+| .+ .++-.
T Consensus 53 IaEiKraSPs~G~i--~~~~d~~---~~a~~y-~~gA~aiSVlTe~~~F~Gs~~~l~~vr~~v~~P------vLrKDFii 120 (454)
T PRK09427 53 ILECKKASPSKGLI--RDDFDPA---EIARVY-KHYASAISVLTDEKYFQGSFDFLPIVRAIVTQP------ILCKDFII 120 (454)
T ss_pred EEEeecCCCCCCcc--CCCCCHH---HHHHHH-HcCCeEEEEecCcCcCCCCHHHHHHHHHhCCCC------EEeccccC
Confidence 34556666632221 2233553 444445 678999988888887765555543 222222 11 12222
Q ss_pred CCCc--c--ccchhhHHHHhhccCCccCHHHHHHHH---HhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCC
Q 020636 190 GKMD--E--ANDSGLAAYVAGQIDRSLSWKDVKWLQ---TITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY 262 (323)
Q Consensus 190 ~~~~--~--~~~~~~~~~~~~~~~~~~~~~~i~~i~---~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~ 262 (323)
.+.+ . ..|+...-.+... +.-+.++.+. ...++-.+| .+.+.++++++.++|++.|-+.|+.- .+
T Consensus 121 d~~QI~ea~~~GADavLLI~~~----L~~~~l~~l~~~a~~lGl~~lv-Evh~~~El~~al~~~a~iiGiNnRdL---~t 192 (454)
T PRK09427 121 DPYQIYLARYYGADAILLMLSV----LDDEQYRQLAAVAHSLNMGVLT-EVSNEEELERAIALGAKVIGINNRNL---RD 192 (454)
T ss_pred CHHHHHHHHHcCCCchhHHHHh----CCHHHHHHHHHHHHHcCCcEEE-EECCHHHHHHHHhCCCCEEEEeCCCC---cc
Confidence 2211 0 0111111111111 2223333333 334554333 57899999999999999998877543 23
Q ss_pred CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcchh
Q 020636 263 VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 263 ~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~~ 319 (323)
-..++..-.++...++.++.+|+.+||+|++|+.++. .|||+|.||+.|+.+++-.
T Consensus 193 ~~vd~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~~-~~~davLiG~~lm~~~d~~ 248 (454)
T PRK09427 193 LSIDLNRTRELAPLIPADVIVISESGIYTHAQVRELS-PFANGFLIGSSLMAEDDLE 248 (454)
T ss_pred ceECHHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHHH-hcCCEEEECHHHcCCCCHH
Confidence 3334444555566666678899999999999999864 5899999999999988744
No 170
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.17 E-value=9e-06 Score=73.37 Aligned_cols=79 Identities=24% Similarity=0.317 Sum_probs=65.3
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+-|+...+.|+|.+.+..-.+. ..+....++.+.++.+.+ .+||+++|||++.+|+.+++.+||+.|.+|+.++..
T Consensus 33 ~~~a~~~~~~g~~~i~v~dld~~-~~g~~~~~~~i~~i~~~~--~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~~ 109 (233)
T PRK00748 33 VAQAKAWEDQGAKWLHLVDLDGA-KAGKPVNLELIEAIVKAV--DIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAVKN 109 (233)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcc-ccCCcccHHHHHHHHHHC--CCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHHhC
Confidence 45578888999999998653221 223457788999998887 799999999999999999999999999999999887
Q ss_pred cc
Q 020636 316 PL 317 (323)
Q Consensus 316 ~~ 317 (323)
|.
T Consensus 110 ~~ 111 (233)
T PRK00748 110 PE 111 (233)
T ss_pred HH
Confidence 73
No 171
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=98.17 E-value=0.00013 Score=65.52 Aligned_cols=144 Identities=22% Similarity=0.216 Sum_probs=94.3
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
..|...+.+.+++++++|++.+ ++|.-- .+| +| +-.
T Consensus 8 ~ad~~~l~~~i~~l~~~g~~~l--H~DvmD---------G~F-vp--------------------------------n~t 43 (220)
T PRK08883 8 SADFARLGEDVEKVLAAGADVV--HFDVMD---------NHY-VP--------------------------------NLT 43 (220)
T ss_pred hcCHHHHHHHHHHHHHcCCCEE--EEeccc---------Ccc-cC--------------------------------ccc
Confidence 4577777888999999998865 444210 112 11 122
Q ss_pred cCHHHHHHHHHh-cCCCEEEec-cCCHHH-HHHHHHcCCCEEEEcCC---------------CC---------CC-----
Q 020636 212 LSWKDVKWLQTI-TKLPILVKG-VLTAED-ARIAVQAGAAGIIVSNH---------------GA---------RQ----- 259 (323)
Q Consensus 212 ~~~~~i~~i~~~-~~~pv~vK~-i~~~e~-a~~~~~~Gad~i~vs~~---------------gg---------~~----- 259 (323)
+..+.++++|+. ++.|+=+.. +.+++. .....++|+|.|.++-- |- +.
T Consensus 44 fg~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~ 123 (220)
T PRK08883 44 FGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLE 123 (220)
T ss_pred cCHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHH
Confidence 446678888876 577776663 345544 56777888888877321 10 00
Q ss_pred -----CC-----------CC----cchHHHHHHHHHHhcC---CCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 260 -----LD-----------YV----PATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 260 -----~~-----------~~----~~~~~~l~~i~~~~~~---~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
.| ++ +..++-+.++++.... ++||.++|||. .+.+.+..++|||.+.+||.++..+
T Consensus 124 ~~l~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf~~~ 202 (220)
T PRK08883 124 YIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIFGQP 202 (220)
T ss_pred HHHHhCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHhCCC
Confidence 01 11 3345666666665521 48999999999 8899999999999999999998776
Q ss_pred chhh
Q 020636 317 LTEK 320 (323)
Q Consensus 317 ~~~~ 320 (323)
+.++
T Consensus 203 d~~~ 206 (220)
T PRK08883 203 DYKA 206 (220)
T ss_pred CHHH
Confidence 6543
No 172
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.10 E-value=1.6e-05 Score=72.45 Aligned_cols=78 Identities=24% Similarity=0.204 Sum_probs=64.6
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+.|+...+.|+|.+.+-.--+. .+.....+.++++.+.+ .+||.+.|||+|.+|+.+++.+||+.|.+|+.++.+
T Consensus 35 ~~~a~~~~~~g~~~l~ivDLd~~--~g~~~n~~~i~~i~~~~--~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~~ 110 (241)
T PRK14024 35 LDAALAWQRDGAEWIHLVDLDAA--FGRGSNRELLAEVVGKL--DVKVELSGGIRDDESLEAALATGCARVNIGTAALEN 110 (241)
T ss_pred HHHHHHHHHCCCCEEEEEecccc--CCCCccHHHHHHHHHHc--CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhCC
Confidence 46678888999999876432121 13456789999999888 799999999999999999999999999999999988
Q ss_pred cc
Q 020636 316 PL 317 (323)
Q Consensus 316 ~~ 317 (323)
|.
T Consensus 111 p~ 112 (241)
T PRK14024 111 PE 112 (241)
T ss_pred HH
Confidence 75
No 173
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=98.09 E-value=5.3e-05 Score=66.48 Aligned_cols=89 Identities=25% Similarity=0.215 Sum_probs=67.1
Q ss_pred EEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCC--CC-CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCC
Q 020636 228 ILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL--DY-VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 304 (323)
Q Consensus 228 v~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~--~~-~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd 304 (323)
++--.+.+.+++..+.+.|+|+|.++.-..+.. .. .+..++.+.++.+..+ ++||++.||| +.+++.+++.+||+
T Consensus 98 ~ig~s~h~~~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~-~~pv~a~GGI-~~~~~~~~~~~G~~ 175 (196)
T TIGR00693 98 IIGVSTHNLEELAEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSI-DIPIVAIGGI-TLENAAEVLAAGAD 175 (196)
T ss_pred EEEEeCCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC-CCCEEEECCc-CHHHHHHHHHcCCC
Confidence 333456889999999999999999865332211 11 2235777888776553 5999999999 58999999999999
Q ss_pred EEEEccccccCcch
Q 020636 305 GIFVSIMPCQCPLT 318 (323)
Q Consensus 305 ~V~iG~~~~~~~~~ 318 (323)
+|.+|+.+..+++-
T Consensus 176 gva~~~~i~~~~dp 189 (196)
T TIGR00693 176 GVAVVSAIMQAADP 189 (196)
T ss_pred EEEEhHHhhCCCCH
Confidence 99999999876553
No 174
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=98.07 E-value=3.6e-05 Score=70.42 Aligned_cols=166 Identities=22% Similarity=0.191 Sum_probs=94.2
Q ss_pred eecCChHHHHHHHHHHHH--cCCcEEEEecCCCCCCchHHHHhhccCC-CC-ccccccccccccCCCcccc---------
Q 020636 130 YVYKDRNVVAQLVRRAER--AGFKAIALTVDTPRLGRREADIKNRFTL-PP-FLTLKNFQGLDLGKMDEAN--------- 196 (323)
Q Consensus 130 y~~~d~~~~~~~~~~a~~--~G~~al~itvd~p~~g~r~~d~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~--------- 196 (323)
-+...++.+.++++++.+ .++.+++|+ |.. ....+..+.- .. .+.+..+.+||.|......
T Consensus 20 ~p~~T~~~I~~lc~eA~~~~~~faaVcV~---P~~---v~~a~~~L~~~~~~~vkv~tVigFP~G~~~t~~K~~Ea~~Ai 93 (257)
T PRK05283 20 NDDDTDEKVIALCHQAKTPVGNTAAICIY---PRF---IPIARKTLREQGTPEIRIATVTNFPHGNDDIDIALAETRAAI 93 (257)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCeeEEEEC---HHH---HHHHHHHhcccCCCCCeEEEEecCCCCCCcHHHHHHHHHHHH
Confidence 334567777888888887 588888765 322 1111111100 01 3445556677766432100
Q ss_pred chhhHH--HHh-----hccCCccCHHHHHHHHHhcCCCEEEecc-----CCHHH-----HHHHHHcCCCEEEEcCCCCCC
Q 020636 197 DSGLAA--YVA-----GQIDRSLSWKDVKWLQTITKLPILVKGV-----LTAED-----ARIAVQAGAAGIIVSNHGARQ 259 (323)
Q Consensus 197 ~~~~~~--~~~-----~~~~~~~~~~~i~~i~~~~~~pv~vK~i-----~~~e~-----a~~~~~~Gad~i~vs~~gg~~ 259 (323)
..|..+ .+. ..++.+...++|+++++..+.++.+|.| ++.++ .+.+.++|||+|..|..-+
T Consensus 94 ~~GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFVKTSTGf~-- 171 (257)
T PRK05283 94 AYGADEVDVVFPYRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASEIAIKAGADFIKTSTGKV-- 171 (257)
T ss_pred HcCCCEEeeeccHHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHHHHHHhCCCEEEcCCCCC--
Confidence 000000 000 1122223345678888766434778865 34342 3567899999999875322
Q ss_pred CCCCcchHHHHHHHHHHh-----cCCCeEEEecCCCCHHHHHHHHHcCCCE
Q 020636 260 LDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKALALGASG 305 (323)
Q Consensus 260 ~~~~~~~~~~l~~i~~~~-----~~~~pvia~GGI~~~~di~kal~lGAd~ 305 (323)
....+.+.+.-+++.+ ++++.|-++|||||.+++.+++.+|.+.
T Consensus 172 --~~gAt~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~ag~~~ 220 (257)
T PRK05283 172 --PVNATLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLALADEI 220 (257)
T ss_pred --CCCCCHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHHHHHHH
Confidence 1234444444444443 3478999999999999999999998664
No 175
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=98.05 E-value=0.00031 Score=61.98 Aligned_cols=83 Identities=10% Similarity=0.087 Sum_probs=55.5
Q ss_pred HHHHHHHHHcCCCEEEEcC-CCC-CCCCCCcchHHHHHHHHHHhc---CCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 236 AEDARIAVQAGAAGIIVSN-HGA-RQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~-~gg-~~~~~~~~~~~~l~~i~~~~~---~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
.+.++.. ..++|++.+.. +.| +........++.+.++++..+ .++|+++.|||+. +++.+++..|||+|.+||
T Consensus 118 ~~~~~~~-~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~~gad~iivgs 195 (211)
T cd00429 118 VEVLEPY-LDEVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAEAGADVLVAGS 195 (211)
T ss_pred HHHHHHH-HhhCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHHcCCCEEEECH
Confidence 3444444 34489886643 222 211122233455666655542 1489999999996 999999999999999999
Q ss_pred ccccCcchhh
Q 020636 311 MPCQCPLTEK 320 (323)
Q Consensus 311 ~~~~~~~~~~ 320 (323)
+++..++..+
T Consensus 196 ai~~~~~~~~ 205 (211)
T cd00429 196 ALFGSDDYAE 205 (211)
T ss_pred HHhCCCCHHH
Confidence 9998887654
No 176
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=98.04 E-value=0.00022 Score=65.32 Aligned_cols=153 Identities=20% Similarity=0.234 Sum_probs=97.2
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
..+.+.+.+.++.+.+.|+++|-+.+ |..- ++.++.+++ .+-.+.+.......
T Consensus 27 dP~~e~s~e~i~~L~~~GaD~iELGv--PfSD----------PvADGP~Iq---------------~A~~rAL~~g~t~~ 79 (265)
T COG0159 27 DPDLETSLEIIKTLVEAGADILELGV--PFSD----------PVADGPTIQ---------------AAHLRALAAGVTLE 79 (265)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEecC--CCCC----------cCccCHHHH---------------HHHHHHHHCCCCHH
Confidence 34678888999999999999887654 4320 011111111 01112222233344
Q ss_pred cCHHHHHHHHHh-cCCCEEEeccCC------HH-HHHHHHHcCCCEEEEcC---------------CCC--------CC-
Q 020636 212 LSWKDVKWLQTI-TKLPILVKGVLT------AE-DARIAVQAGAAGIIVSN---------------HGA--------RQ- 259 (323)
Q Consensus 212 ~~~~~i~~i~~~-~~~pv~vK~i~~------~e-~a~~~~~~Gad~i~vs~---------------~gg--------~~- 259 (323)
..++.++.+|+. .++|+++=.-.+ .+ -.+.+.++|+|++++-- ||= +.
T Consensus 80 ~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~ 159 (265)
T COG0159 80 DTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTP 159 (265)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 568889999966 578887664322 22 37789999999998721 110 00
Q ss_pred -------------------C---CCCc-----chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccc
Q 020636 260 -------------------L---DYVP-----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 260 -------------------~---~~~~-----~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~ 312 (323)
. .|.. ..-+.+..+++.. ++||.+-=||++++++.++... ||+|.+|+++
T Consensus 160 ~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSAi 236 (265)
T COG0159 160 DERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYT--DVPVLVGFGISSPEQAAQVAEA-ADGVIVGSAI 236 (265)
T ss_pred HHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhc--CCCeEEecCcCCHHHHHHHHHh-CCeEEEcHHH
Confidence 0 0111 1234566666665 8999997799999999999999 9999999988
Q ss_pred cc
Q 020636 313 CQ 314 (323)
Q Consensus 313 ~~ 314 (323)
..
T Consensus 237 V~ 238 (265)
T COG0159 237 VK 238 (265)
T ss_pred HH
Confidence 53
No 177
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=98.04 E-value=2.6e-05 Score=69.39 Aligned_cols=81 Identities=22% Similarity=0.260 Sum_probs=67.3
Q ss_pred CHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 235 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 235 ~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
..|-|++..+.|||-++.-.-.. ..++..+.++.+.++++.+ .+|+-+-|||++.+|+.+.|.+|||-|.|.++.+.
T Consensus 32 pVelA~~Y~e~GADElvFlDItA-s~~gr~~~~~vv~r~A~~v--fiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~ 108 (256)
T COG0107 32 PVELAKRYNEEGADELVFLDITA-SSEGRETMLDVVERVAEQV--FIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVK 108 (256)
T ss_pred hHHHHHHHHHcCCCeEEEEeccc-ccccchhHHHHHHHHHhhc--eeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhc
Confidence 35778999999999998633221 1233456789999999888 89999999999999999999999999999999998
Q ss_pred Ccch
Q 020636 315 CPLT 318 (323)
Q Consensus 315 ~~~~ 318 (323)
+|..
T Consensus 109 ~p~l 112 (256)
T COG0107 109 DPEL 112 (256)
T ss_pred ChHH
Confidence 8864
No 178
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.04 E-value=0.00055 Score=60.59 Aligned_cols=166 Identities=12% Similarity=0.073 Sum_probs=107.4
Q ss_pred eeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHh---
Q 020636 129 LYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA--- 205 (323)
Q Consensus 129 Ly~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 205 (323)
+.-..+.+...+.++.+.+.|++.+-||.++|..-.--+.++..| | .+.+ +. +.+.+ .....+...
T Consensus 9 Vir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~--~-~~~v----GA--GTVl~--~e~a~~ai~aGA 77 (201)
T PRK06015 9 VLLIDDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEV--E-EAIV----GA--GTILN--AKQFEDAAKAGS 77 (201)
T ss_pred EEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHC--C-CCEE----ee--EeCcC--HHHHHHHHHcCC
Confidence 344567888888888888999999999999886433334444444 2 1110 10 00000 000011110
Q ss_pred -hccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 206 -GQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 206 -~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
....|.++.+.+++.++ .++|. +=|++|+-|+..+.++|+|.|.+.-.+ .-++ ...++.++.-++ ++|++
T Consensus 78 ~FivSP~~~~~vi~~a~~-~~i~~-iPG~~TptEi~~A~~~Ga~~vK~FPa~---~~GG---~~yikal~~plp-~~~l~ 148 (201)
T PRK06015 78 RFIVSPGTTQELLAAAND-SDVPL-LPGAATPSEVMALREEGYTVLKFFPAE---QAGG---AAFLKALSSPLA-GTFFC 148 (201)
T ss_pred CEEECCCCCHHHHHHHHH-cCCCE-eCCCCCHHHHHHHHHCCCCEEEECCch---hhCC---HHHHHHHHhhCC-CCcEE
Confidence 11246677788887765 46654 558999999999999999999985311 0011 244555555454 79999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 285 LDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 285 a~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
..|||.. +++.+.|.+|+..++.|+.+...
T Consensus 149 ptGGV~~-~n~~~~l~ag~~~~~ggs~l~~~ 178 (201)
T PRK06015 149 PTGGISL-KNARDYLSLPNVVCVGGSWVAPK 178 (201)
T ss_pred ecCCCCH-HHHHHHHhCCCeEEEEchhhCCc
Confidence 9999976 78999999998888888887643
No 179
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=98.04 E-value=5.3e-05 Score=66.41 Aligned_cols=42 Identities=36% Similarity=0.544 Sum_probs=36.2
Q ss_pred CCCeE--EEecCCCCHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 279 GRIPV--FLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 279 ~~~pv--ia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
+++|| +++|||.|+.|+.-+++||||+|.+|+..+..++-.|
T Consensus 206 GrlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFks~dP~k 249 (296)
T KOG1606|consen 206 GRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDPVK 249 (296)
T ss_pred CCCceEEecccCcCChhHHHHHHHcCCCeEEeccccccCCCHHH
Confidence 47777 6899999999999999999999999998887765433
No 180
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=98.02 E-value=0.00058 Score=60.45 Aligned_cols=101 Identities=22% Similarity=0.194 Sum_probs=69.3
Q ss_pred HHHHHHHHHhcCCCEEEe-ccCCHHHH--HHHHHcCCCEEEEcCCCCCCC--CCCcchHHHHHHHHHHhcCCCeEEEecC
Q 020636 214 WKDVKWLQTITKLPILVK-GVLTAEDA--RIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGG 288 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK-~i~~~e~a--~~~~~~Gad~i~vs~~gg~~~--~~~~~~~~~l~~i~~~~~~~~pvia~GG 288 (323)
.+.++.+++..+.+++.. ++.+..+. ..+...|+|++.+....+... .+.+..++.++++. . ++|+++.||
T Consensus 85 ~~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~--~--~~PvilaGG 160 (203)
T cd00405 85 PEYCAQLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGGGTGKTFDWSLLRGLA--S--RKPVILAGG 160 (203)
T ss_pred HHHHHHHHhhcCCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCCCCCcceEChHHhhccc--c--CCCEEEECC
Confidence 346677777666665522 23333332 345568999998855322111 23345677777665 3 799999999
Q ss_pred CCCHHHHHHHHHcC-CCEEEEccccccCcchh
Q 020636 289 VRRGTDVFKALALG-ASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 289 I~~~~di~kal~lG-Ad~V~iG~~~~~~~~~~ 319 (323)
| +++.+.++++.| +++|-+.+.+...|-.+
T Consensus 161 I-~~~Nv~~~i~~~~~~gvdv~S~ie~~pg~k 191 (203)
T cd00405 161 L-TPDNVAEAIRLVRPYGVDVSSGVETSPGIK 191 (203)
T ss_pred C-ChHHHHHHHHhcCCCEEEcCCcccCCCCCc
Confidence 9 999999999999 99999999998765443
No 181
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=98.01 E-value=4.5e-05 Score=69.17 Aligned_cols=96 Identities=23% Similarity=0.313 Sum_probs=64.6
Q ss_pred HHHHHHHHHhc---CCCEEEeccCCHHH-------------HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHh
Q 020636 214 WKDVKWLQTIT---KLPILVKGVLTAED-------------ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT 277 (323)
Q Consensus 214 ~~~i~~i~~~~---~~pv~vK~i~~~e~-------------a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~ 277 (323)
.+.++.+++.. ++|+++-...+.++ ++.+.++|+|.|.++.. +. ........+.+.++.+..
T Consensus 111 ~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg-~~-~~~t~~~~~~~~~~~~~~ 188 (236)
T PF01791_consen 111 IEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTG-KP-VGATPEDVELMRKAVEAA 188 (236)
T ss_dssp HHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-S-SS-SCSHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCC-cc-ccccHHHHHHHHHHHHhc
Confidence 34566665554 67777774433333 56778999999999753 21 222233455566666544
Q ss_pred cCCCe----EEEecCC------CCHHHHHHHHHcCC--CEEEEccccc
Q 020636 278 QGRIP----VFLDGGV------RRGTDVFKALALGA--SGIFVSIMPC 313 (323)
Q Consensus 278 ~~~~p----via~GGI------~~~~di~kal~lGA--d~V~iG~~~~ 313 (323)
.+| |.++||+ ++.+++.+++.+|| .++..||.+.
T Consensus 189 --~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr~i~ 234 (236)
T PF01791_consen 189 --PVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTSSGRNIW 234 (236)
T ss_dssp --SSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEEHHHHH
T ss_pred --CCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 466 9999999 99999999999999 8888887553
No 182
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=98.00 E-value=0.0001 Score=67.69 Aligned_cols=153 Identities=20% Similarity=0.281 Sum_probs=91.7
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
..|.+.+.+.++.+.+.|++.+-|.+ |..- | ...||.- ..+..+.+....+..
T Consensus 20 ~P~~~~~~~~~~~l~~~GaD~iEiGi--PfSD------------P----------~ADGpvI---q~A~~rAL~~G~~~~ 72 (259)
T PF00290_consen 20 YPDLETTLEILKALEEAGADIIEIGI--PFSD------------P----------VADGPVI---QKASQRALKNGFTLE 72 (259)
T ss_dssp SSSHHHHHHHHHHHHHTTBSSEEEE----SSS------------C----------TTSSHHH---HHHHHHHHHTT--HH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECC--CCCC------------C----------CCCCHHH---HHHHHHHHHCCCCHH
Confidence 45678889999999999999887654 4310 1 0011110 001111222222333
Q ss_pred cCHHHHHHHH-HhcCCCEEEeccC------C-HHHHHHHHHcCCCEEEEcC---------------CCCC--------C-
Q 020636 212 LSWKDVKWLQ-TITKLPILVKGVL------T-AEDARIAVQAGAAGIIVSN---------------HGAR--------Q- 259 (323)
Q Consensus 212 ~~~~~i~~i~-~~~~~pv~vK~i~------~-~e~a~~~~~~Gad~i~vs~---------------~gg~--------~- 259 (323)
..++.++++| +..+.|+++=+=. . .+-++.+.++|+|++++-. ||=. .
T Consensus 73 ~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~ 152 (259)
T PF00290_consen 73 KIFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTP 152 (259)
T ss_dssp HHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-
T ss_pred HHHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 4467788898 6668888765321 1 2347888899999998822 1100 0
Q ss_pred -------------------C---CCC----cc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccc
Q 020636 260 -------------------L---DYV----PA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 260 -------------------~---~~~----~~-~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~ 312 (323)
. .|. +. ..+.+..+++.. +.||.+-=||++++++.++. .|||+|.||++|
T Consensus 153 ~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~--~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~ 229 (259)
T PF00290_consen 153 EERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHT--DLPVAVGFGISTPEQAKKLA-AGADGVIVGSAF 229 (259)
T ss_dssp HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTT--SS-EEEESSS-SHHHHHHHH-TTSSEEEESHHH
T ss_pred HHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhc--CcceEEecCCCCHHHHHHHH-ccCCEEEECHHH
Confidence 0 111 11 135666776666 89999977999999999888 999999999988
Q ss_pred cc
Q 020636 313 CQ 314 (323)
Q Consensus 313 ~~ 314 (323)
+.
T Consensus 230 v~ 231 (259)
T PF00290_consen 230 VK 231 (259)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 183
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=98.00 E-value=5.7e-05 Score=68.96 Aligned_cols=99 Identities=16% Similarity=0.113 Sum_probs=72.5
Q ss_pred CHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcC-------------------CCCCC-------C------
Q 020636 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN-------------------HGARQ-------L------ 260 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~-------------------~gg~~-------~------ 260 (323)
+.+.++.+.+.+++|+.+.|-...++++.++++||+.|+++. +|+.+ .
T Consensus 64 n~~~i~~i~~~~~~~v~vGGGIr~e~v~~~l~aGa~rVvIGS~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~~~~g~ 143 (253)
T TIGR02129 64 NDDAAKEALHAYPGGLQVGGGINDTNAQEWLDEGASHVIVTSWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRKTQDGR 143 (253)
T ss_pred cHHHHHHHHHhCCCCEEEeCCcCHHHHHHHHHcCCCEEEECcHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEEcCCCc
Confidence 567889999989999999864334999999999999999853 11100 0
Q ss_pred --------------------------------------CC--CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHH
Q 020636 261 --------------------------------------DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300 (323)
Q Consensus 261 --------------------------------------~~--~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~ 300 (323)
|+ ..+.++++.++.+.+ ++|||++||+++.+|+.++-.
T Consensus 144 ~~V~~~GW~~~t~~~~~~e~~~~~~~~~~~il~TdI~rDGtl~G~dlel~~~l~~~~--~ipVIASGGv~s~eDi~~l~~ 221 (253)
T TIGR02129 144 WIVAMNKWQTITDLELNAETLEELSKYCDEFLIHAADVEGLCKGIDEELVSKLGEWS--PIPITYAGGAKSIDDLDLVDE 221 (253)
T ss_pred EEEEECCCcccCCCChHHHHHHHHHhhCCEEEEeeecccCccccCCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHH
Confidence 11 123455555555555 799999999999999998855
Q ss_pred c--CCCEEEEccccc
Q 020636 301 L--GASGIFVSIMPC 313 (323)
Q Consensus 301 l--GAd~V~iG~~~~ 313 (323)
+ |...+.+|++++
T Consensus 222 ~~~g~~~aIvG~Alf 236 (253)
T TIGR02129 222 LSKGKVDLTIGSALD 236 (253)
T ss_pred hcCCCCcEEeeehHH
Confidence 5 666688898764
No 184
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.99 E-value=3.1e-05 Score=69.98 Aligned_cols=77 Identities=16% Similarity=0.203 Sum_probs=59.5
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 237 e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
+-|+...+. ++.+.+-.--| .+.+.++.++.+.++.+.+ .+||+++|||+|.+|+.+++.+||+.|.+|+..+ +|
T Consensus 34 ~~a~~~~~~-~~~l~ivDldg-a~~g~~~n~~~i~~i~~~~--~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~-~~ 108 (228)
T PRK04128 34 EIALRFSEY-VDKIHVVDLDG-AFEGKPKNLDVVKNIIRET--GLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF-DL 108 (228)
T ss_pred HHHHHHHHh-CCEEEEEECcc-hhcCCcchHHHHHHHHhhC--CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc-CH
Confidence 445666666 88877633222 1223456889999998876 7999999999999999999999999999999988 65
Q ss_pred ch
Q 020636 317 LT 318 (323)
Q Consensus 317 ~~ 318 (323)
.+
T Consensus 109 ~~ 110 (228)
T PRK04128 109 EF 110 (228)
T ss_pred HH
Confidence 53
No 185
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=97.97 E-value=0.00072 Score=62.76 Aligned_cols=92 Identities=23% Similarity=0.217 Sum_probs=65.9
Q ss_pred HHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhc---CCCeEEEecCCC
Q 020636 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVR 290 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~~pvia~GGI~ 290 (323)
.+.++.+|+..+...+.-.+.+.+++..+.++|+|+|.+.+-. +.. +.++.+.++ .++|++++|||
T Consensus 171 ~~av~~~R~~~~~~~IgVev~t~eea~~A~~~gaD~I~ld~~~-------p~~---l~~~~~~~~~~~~~i~i~AsGGI- 239 (272)
T cd01573 171 LKALARLRATAPEKKIVVEVDSLEEALAAAEAGADILQLDKFS-------PEE---LAELVPKLRSLAPPVLLAAAGGI- 239 (272)
T ss_pred HHHHHHHHHhCCCCeEEEEcCCHHHHHHHHHcCCCEEEECCCC-------HHH---HHHHHHHHhccCCCceEEEECCC-
Confidence 3457777776543233334689999999999999999886521 122 233333221 26999999999
Q ss_pred CHHHHHHHHHcCCCEEEEccccccCc
Q 020636 291 RGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
+.+.+.+..+.|+|++.+|..+...|
T Consensus 240 ~~~ni~~~~~~Gvd~I~vsai~~a~~ 265 (272)
T cd01573 240 NIENAAAYAAAGADILVTSAPYYAKP 265 (272)
T ss_pred CHHHHHHHHHcCCcEEEEChhhcCcc
Confidence 88999999999999998888765443
No 186
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.95 E-value=9.4e-05 Score=70.78 Aligned_cols=98 Identities=20% Similarity=0.172 Sum_probs=73.1
Q ss_pred HHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCC--CCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHH
Q 020636 218 KWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 294 (323)
Q Consensus 218 ~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~d 294 (323)
...|+..+ ..++-..+.+.+++..+.+.|+|+|.++-...+. ....+..++.+..+.+.. ++||++-|||. .++
T Consensus 231 ~~aR~llg~~~iIG~S~Hs~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~--~iPv~AiGGI~-~~n 307 (347)
T PRK02615 231 AVARQLLGPEKIIGRSTTNPEEMAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEA--PIPWFAIGGID-KSN 307 (347)
T ss_pred HHHHHhcCCCCEEEEecCCHHHHHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCCC-HHH
Confidence 34455442 3344345578999999999999999987544321 222345578888887766 79999999995 889
Q ss_pred HHHHHHcCCCEEEEccccccCcch
Q 020636 295 VFKALALGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 295 i~kal~lGAd~V~iG~~~~~~~~~ 318 (323)
+.+++.+||++|.+++.++..++-
T Consensus 308 i~~l~~~Ga~gVAvisaI~~a~dp 331 (347)
T PRK02615 308 IPEVLQAGAKRVAVVRAIMGAEDP 331 (347)
T ss_pred HHHHHHcCCcEEEEeHHHhCCCCH
Confidence 999999999999999999876543
No 187
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.95 E-value=0.00012 Score=65.96 Aligned_cols=99 Identities=11% Similarity=0.026 Sum_probs=71.8
Q ss_pred HHHHHHhcCCCEEEec--cCCHHHHHHHHHcCCCEEEEcCCCCC-CCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 020636 217 VKWLQTITKLPILVKG--VLTAEDARIAVQAGAAGIIVSNHGAR-QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (323)
Q Consensus 217 i~~i~~~~~~pv~vK~--i~~~e~a~~~~~~Gad~i~vs~~gg~-~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~ 293 (323)
+...|+..+--.++.. ..+.+++..+.+.|+|+|.++.--.+ ..+..+..++.+.++.+.+ ++||++-||| +.+
T Consensus 100 ~~~~r~~~~~~~iiG~s~~~s~~~a~~A~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~--~iPvvAIGGI-~~~ 176 (221)
T PRK06512 100 LAEAIEKHAPKMIVGFGNLRDRHGAMEIGELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMI--EIPCIVQAGS-DLA 176 (221)
T ss_pred HHHHHHhcCCCCEEEecCCCCHHHHHHhhhcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhC--CCCEEEEeCC-CHH
Confidence 3455555432234443 35788898999999999998643211 1122234567777777766 7999999999 899
Q ss_pred HHHHHHHcCCCEEEEccccccCcch
Q 020636 294 DVFKALALGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 294 di~kal~lGAd~V~iG~~~~~~~~~ 318 (323)
++.+++..||++|.+-+.++..++.
T Consensus 177 n~~~~~~~GA~giAvisai~~~~dp 201 (221)
T PRK06512 177 SAVEVAETGAEFVALERAVFDAHDP 201 (221)
T ss_pred HHHHHHHhCCCEEEEhHHhhCCCCH
Confidence 9999999999999999999876654
No 188
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.95 E-value=0.00011 Score=68.15 Aligned_cols=90 Identities=20% Similarity=0.227 Sum_probs=68.4
Q ss_pred HHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHH
Q 020636 216 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 295 (323)
Q Consensus 216 ~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di 295 (323)
.++.+|+..+...+--.+.+.++++.+.++|+|+|.+.| .+.+.+.++.+..++++|+.++||| +.+.+
T Consensus 179 av~~~r~~~~~~~I~VEv~tleea~eA~~~gaD~I~LD~----------~~~e~l~~~v~~~~~~i~leAsGGI-t~~ni 247 (277)
T PRK05742 179 AVAAAHRIAPGKPVEVEVESLDELRQALAAGADIVMLDE----------LSLDDMREAVRLTAGRAKLEASGGI-NESTL 247 (277)
T ss_pred HHHHHHHhCCCCeEEEEeCCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHHhCCCCcEEEECCC-CHHHH
Confidence 366677664322233346889999999999999998754 2455666666655558999999999 68999
Q ss_pred HHHHHcCCCEEEEccccccCc
Q 020636 296 FKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 296 ~kal~lGAd~V~iG~~~~~~~ 316 (323)
.+..+.|+|.+.+|......+
T Consensus 248 ~~~a~tGvD~Isvg~lt~s~~ 268 (277)
T PRK05742 248 RVIAETGVDYISIGAMTKDVK 268 (277)
T ss_pred HHHHHcCCCEEEEChhhcCCc
Confidence 999999999999998765544
No 189
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.94 E-value=3.8e-05 Score=69.69 Aligned_cols=79 Identities=25% Similarity=0.392 Sum_probs=63.6
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+.++.+.+.|++.+.+-...+ .........+.+.++.+.+ .+|+++.|||++.+|+.+++.+||+.|.+|+..+.+
T Consensus 35 ~e~a~~~~~~G~~~l~i~dl~~-~~~~~~~~~~~i~~i~~~~--~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~~ 111 (241)
T PRK13585 35 VEVAKRWVDAGAETLHLVDLDG-AFEGERKNAEAIEKIIEAV--GVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAVEN 111 (241)
T ss_pred HHHHHHHHHcCCCEEEEEechh-hhcCCcccHHHHHHHHHHc--CCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHhhC
Confidence 4668888899999998754321 1123345678888888877 799999999999999999999999999999988877
Q ss_pred cc
Q 020636 316 PL 317 (323)
Q Consensus 316 ~~ 317 (323)
|+
T Consensus 112 ~~ 113 (241)
T PRK13585 112 PE 113 (241)
T ss_pred hH
Confidence 64
No 190
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.93 E-value=5.4e-05 Score=68.37 Aligned_cols=79 Identities=24% Similarity=0.301 Sum_probs=64.2
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+-|+...+.|++.+.+..-.+ ...+....++.+.++.+.+ ++||+++|||++.+|+.+++..||+.|.+|+.++..
T Consensus 33 ~~~a~~~~~~g~~~i~i~dl~~-~~~~~~~n~~~~~~i~~~~--~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~~ 109 (232)
T TIGR03572 33 VNAARIYNAKGADELIVLDIDA-SKRGREPLFELISNLAEEC--FMPLTVGGGIRSLEDAKKLLSLGADKVSINTAALEN 109 (232)
T ss_pred HHHHHHHHHcCCCEEEEEeCCC-cccCCCCCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhcC
Confidence 4557778889999888754332 1123356788899998887 799999999999999999999999999999999887
Q ss_pred cc
Q 020636 316 PL 317 (323)
Q Consensus 316 ~~ 317 (323)
|.
T Consensus 110 ~~ 111 (232)
T TIGR03572 110 PD 111 (232)
T ss_pred HH
Confidence 74
No 191
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.93 E-value=7.2e-05 Score=75.54 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=41.0
Q ss_pred chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHH-cCCCEEEEcccccc
Q 020636 265 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFVSIMPCQ 314 (323)
Q Consensus 265 ~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~-lGAd~V~iG~~~~~ 314 (323)
.+++++..+.+.+ ++|||++||+.+.+|+.+++. .||+++..++.|..
T Consensus 469 ~d~~l~~~v~~~~--~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~ 517 (538)
T PLN02617 469 FDIELVKLVSDAV--TIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHR 517 (538)
T ss_pred cCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeecc
Confidence 3466777777776 899999999999999999997 67999999998854
No 192
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.93 E-value=0.00014 Score=67.81 Aligned_cols=92 Identities=15% Similarity=0.147 Sum_probs=69.1
Q ss_pred HHHHHHHHHhcCC-CEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHh---cCCCeEEEecCC
Q 020636 214 WKDVKWLQTITKL-PILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGV 289 (323)
Q Consensus 214 ~~~i~~i~~~~~~-pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~~pvia~GGI 289 (323)
.+.++.+|+..+. ..+--.+.+.+++..+.++|+|+|.+.|- +.+.+.++.+.+ ..++++.++|||
T Consensus 183 ~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~GaD~I~LDn~----------~~e~l~~av~~~~~~~~~i~leAsGGI 252 (288)
T PRK07428 183 GEAITRIRQRIPYPLTIEVETETLEQVQEALEYGADIIMLDNM----------PVDLMQQAVQLIRQQNPRVKIEASGNI 252 (288)
T ss_pred HHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 3457888887652 22333568999999999999999988753 234444444433 347999999999
Q ss_pred CCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 290 RRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 290 ~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
+.+.+.+..++|+|.+.+|++....|
T Consensus 253 -t~~ni~~ya~tGvD~Isvgsl~~sa~ 278 (288)
T PRK07428 253 -TLETIRAVAETGVDYISSSAPITRSP 278 (288)
T ss_pred -CHHHHHHHHHcCCCEEEEchhhhCCC
Confidence 69999999999999999999876443
No 193
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=97.92 E-value=0.00014 Score=67.24 Aligned_cols=87 Identities=22% Similarity=0.223 Sum_probs=68.4
Q ss_pred HHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHH
Q 020636 216 DVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 294 (323)
Q Consensus 216 ~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~d 294 (323)
.++.+|+..+ ...+--.+.+.++++.+.+.|+|+|.+.+ -..+.++++.+.++.++||.++||| +.+.
T Consensus 167 av~~~r~~~~~~~~Igvev~t~eea~~A~~~gaDyI~ld~----------~~~e~lk~~v~~~~~~ipi~AsGGI-~~~n 235 (265)
T TIGR00078 167 AVKRARAAAPFALKIEVEVESLEEAEEAAEAGADIIMLDN----------MKPEEIKEAVQLLKGRVLLEASGGI-TLDN 235 (265)
T ss_pred HHHHHHHhCCCCCeEEEEeCCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHHhcCCCcEEEECCC-CHHH
Confidence 4778888764 33344456899999999999999998865 2336667776666445999999999 6899
Q ss_pred HHHHHHcCCCEEEEccccc
Q 020636 295 VFKALALGASGIFVSIMPC 313 (323)
Q Consensus 295 i~kal~lGAd~V~iG~~~~ 313 (323)
+.+..+.|+|++.+|....
T Consensus 236 i~~~a~~Gvd~Isvgait~ 254 (265)
T TIGR00078 236 LEEYAETGVDVISSGALTH 254 (265)
T ss_pred HHHHHHcCCCEEEeCHHHc
Confidence 9999999999999977654
No 194
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.91 E-value=5.8e-05 Score=68.53 Aligned_cols=78 Identities=14% Similarity=0.083 Sum_probs=63.4
Q ss_pred HHHHHHHH-cCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 237 EDARIAVQ-AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 237 e~a~~~~~-~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
+-|+...+ .|||.+.+..-.+. ..+.+..++.+.++.+.+ .+||.+.|||||.+|+.+++.+||+.|.+|+..+.+
T Consensus 35 ~~a~~~~~~~Ga~~l~ivDLd~a-~~~~~~n~~~I~~i~~~~--~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~~ 111 (234)
T PRK13587 35 ESIAYYSQFECVNRIHIVDLIGA-KAQHAREFDYIKSLRRLT--TKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQD 111 (234)
T ss_pred HHHHHHHhccCCCEEEEEECccc-ccCCcchHHHHHHHHhhc--CCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHhcC
Confidence 55777777 69999987432211 123456789999999877 799999999999999999999999999999999888
Q ss_pred cc
Q 020636 316 PL 317 (323)
Q Consensus 316 ~~ 317 (323)
|.
T Consensus 112 ~~ 113 (234)
T PRK13587 112 TD 113 (234)
T ss_pred HH
Confidence 74
No 195
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=97.90 E-value=9.6e-05 Score=69.40 Aligned_cols=86 Identities=19% Similarity=0.269 Sum_probs=65.4
Q ss_pred eccCCHHHHHHHHHcCCCEEEEcC--CCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEE
Q 020636 231 KGVLTAEDARIAVQAGAAGIIVSN--HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFV 308 (323)
Q Consensus 231 K~i~~~e~a~~~~~~Gad~i~vs~--~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~i 308 (323)
=-..++..++++.+.|+-+|.--. -|. ..+....+.+..+.+.. ++||+.++||.+++|+.+|+++|||+|.+
T Consensus 203 yc~~d~~~a~~l~~~g~~avmPl~~pIGs---g~gv~~p~~i~~~~e~~--~vpVivdAGIg~~sda~~AmelGadgVL~ 277 (326)
T PRK11840 203 YCSDDPIAAKRLEDAGAVAVMPLGAPIGS---GLGIQNPYTIRLIVEGA--TVPVLVDAGVGTASDAAVAMELGCDGVLM 277 (326)
T ss_pred EeCCCHHHHHHHHhcCCEEEeeccccccC---CCCCCCHHHHHHHHHcC--CCcEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 345789999999999995554311 111 01244667777777765 79999999999999999999999999999
Q ss_pred ccccccCcchhhh
Q 020636 309 SIMPCQCPLTEKI 321 (323)
Q Consensus 309 G~~~~~~~~~~~~ 321 (323)
.++....++--++
T Consensus 278 nSaIa~a~dPv~M 290 (326)
T PRK11840 278 NTAIAEAKNPVLM 290 (326)
T ss_pred cceeccCCCHHHH
Confidence 9998876665443
No 196
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=97.88 E-value=0.00019 Score=66.40 Aligned_cols=87 Identities=23% Similarity=0.231 Sum_probs=69.4
Q ss_pred HHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHH
Q 020636 216 DVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 294 (323)
Q Consensus 216 ~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~d 294 (323)
.++.+|+..+ ...+.-.+.+.++++.+.++|+|+|.+.+- ..+.+.++.+.++.++|+.++||| +.+.
T Consensus 171 ~v~~~r~~~~~~~~Igvev~s~eea~~A~~~gaDyI~ld~~----------~~e~l~~~~~~~~~~ipi~AiGGI-~~~n 239 (268)
T cd01572 171 AVRRARAAAPFTLKIEVEVETLEQLKEALEAGADIIMLDNM----------SPEELREAVALLKGRVLLEASGGI-TLEN 239 (268)
T ss_pred HHHHHHHhCCCCCeEEEEECCHHHHHHHHHcCCCEEEECCc----------CHHHHHHHHHHcCCCCcEEEECCC-CHHH
Confidence 4777888764 323434568999999999999999988652 356777777666446999999999 6899
Q ss_pred HHHHHHcCCCEEEEccccc
Q 020636 295 VFKALALGASGIFVSIMPC 313 (323)
Q Consensus 295 i~kal~lGAd~V~iG~~~~ 313 (323)
+.+..+.|+|++.+|+...
T Consensus 240 i~~~a~~Gvd~Iav~sl~~ 258 (268)
T cd01572 240 IRAYAETGVDYISVGALTH 258 (268)
T ss_pred HHHHHHcCCCEEEEEeeec
Confidence 9999999999999999776
No 197
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.87 E-value=0.001 Score=59.53 Aligned_cols=170 Identities=15% Similarity=0.127 Sum_probs=107.5
Q ss_pred eEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHh
Q 020636 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (323)
Q Consensus 126 ~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (323)
.+-+....+.+...++++.+.+.|++.+-||+..|..-.--+.++..| |. +.+ ..+.-..+ ........
T Consensus 17 ~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~--p~-~~I--GAGTVl~~------~~a~~a~~ 85 (212)
T PRK05718 17 VVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEV--PE-ALI--GAGTVLNP------EQLAQAIE 85 (212)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHC--CC-CEE--EEeeccCH------HHHHHHHH
Confidence 444445677888888888888999999999998885333334555555 31 110 01100000 00000100
Q ss_pred h----ccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCC
Q 020636 206 G----QIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 281 (323)
Q Consensus 206 ~----~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~ 281 (323)
. -..|.++.+.++..++ .++|+ +=|+.|+.++..+.++|++.|.+.-.+ .. + ....++.++.-++ .+
T Consensus 86 aGA~FivsP~~~~~vi~~a~~-~~i~~-iPG~~TptEi~~a~~~Ga~~vKlFPa~--~~-g---g~~~lk~l~~p~p-~~ 156 (212)
T PRK05718 86 AGAQFIVSPGLTPPLLKAAQE-GPIPL-IPGVSTPSELMLGMELGLRTFKFFPAE--AS-G---GVKMLKALAGPFP-DV 156 (212)
T ss_pred cCCCEEECCCCCHHHHHHHHH-cCCCE-eCCCCCHHHHHHHHHCCCCEEEEccch--hc-c---CHHHHHHHhccCC-CC
Confidence 0 1235666777777665 46654 447899999999999999999994211 00 1 2345555555454 69
Q ss_pred eEEEecCCCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 282 PVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 282 pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
+++..|||.. +++.+.+.+|+..++.|+.++...
T Consensus 157 ~~~ptGGV~~-~ni~~~l~ag~v~~vggs~L~~~~ 190 (212)
T PRK05718 157 RFCPTGGISP-ANYRDYLALPNVLCIGGSWMVPKD 190 (212)
T ss_pred eEEEeCCCCH-HHHHHHHhCCCEEEEEChHhCCcc
Confidence 9999999976 899999999977777788776543
No 198
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=97.85 E-value=0.0017 Score=60.56 Aligned_cols=78 Identities=22% Similarity=0.321 Sum_probs=61.9
Q ss_pred cCCHHHHHHHH-HcCCCEEEEc--C-CCCCCCCCCcchHHHHHHHHHHhcCCCeEEEec--CCCCHHHHHHHHHcCCCEE
Q 020636 233 VLTAEDARIAV-QAGAAGIIVS--N-HGARQLDYVPATIMALEEVVKATQGRIPVFLDG--GVRRGTDVFKALALGASGI 306 (323)
Q Consensus 233 i~~~e~a~~~~-~~Gad~i~vs--~-~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~G--GI~~~~di~kal~lGAd~V 306 (323)
..++++|+.+. +.|+|++-++ + ||- ..+...-.++.|.++.+.+ ++|+++=| ||. .+++.+++..|++.|
T Consensus 152 ~t~~eea~~f~~~tg~DyLAvaiG~~hg~-~~~~~~l~~~~L~~i~~~~--~iPlV~hG~SGI~-~e~~~~~i~~G~~ki 227 (281)
T PRK06806 152 LTSTTEAKRFAEETDVDALAVAIGNAHGM-YNGDPNLRFDRLQEINDVV--HIPLVLHGGSGIS-PEDFKKCIQHGIRKI 227 (281)
T ss_pred eCCHHHHHHHHHhhCCCEEEEccCCCCCC-CCCCCccCHHHHHHHHHhc--CCCEEEECCCCCC-HHHHHHHHHcCCcEE
Confidence 36889999887 5699999994 3 342 2222334688999999988 79999999 874 578999999999999
Q ss_pred EEcccccc
Q 020636 307 FVSIMPCQ 314 (323)
Q Consensus 307 ~iG~~~~~ 314 (323)
-+.|.+..
T Consensus 228 nv~T~i~~ 235 (281)
T PRK06806 228 NVATATFN 235 (281)
T ss_pred EEhHHHHH
Confidence 99998865
No 199
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=97.85 E-value=0.0014 Score=58.42 Aligned_cols=102 Identities=13% Similarity=0.165 Sum_probs=60.1
Q ss_pred HHHHHHhcCCCEEEec-cCCHHHHHHHHHcCCCEEEEcC-C-CCCCCCCCcchHHHHHHHHHHhcC---CCeEEEecCCC
Q 020636 217 VKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN-H-GARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVR 290 (323)
Q Consensus 217 i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~Gad~i~vs~-~-gg~~~~~~~~~~~~l~~i~~~~~~---~~pvia~GGI~ 290 (323)
++.+++. +..+.+-. ..+..+..+....++|+|.+.. + |++.....+..++.+.++++..+. ..+|.++|||+
T Consensus 102 ~~~~~~~-~~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~ 180 (220)
T PRK05581 102 LQLIKSA-GIKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGIN 180 (220)
T ss_pred HHHHHHc-CCEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCC
Confidence 4555443 43333322 1233333333445689876643 2 222111122334556666554421 14467899999
Q ss_pred CHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 291 RGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
. +++.+++..|+|+|.+||.++..++..+
T Consensus 181 ~-~nv~~l~~~GaD~vvvgSai~~~~d~~~ 209 (220)
T PRK05581 181 A-DNIKECAEAGADVFVAGSAVFGAPDYKE 209 (220)
T ss_pred H-HHHHHHHHcCCCEEEEChhhhCCCCHHH
Confidence 9 7999999999999999999998887544
No 200
>PLN02334 ribulose-phosphate 3-epimerase
Probab=97.81 E-value=0.00063 Score=61.44 Aligned_cols=83 Identities=19% Similarity=0.247 Sum_probs=58.9
Q ss_pred HHHHHHHHHcC-CCEEEEcC-CCCCCC-CCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccc
Q 020636 236 AEDARIAVQAG-AAGIIVSN-HGARQL-DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 236 ~e~a~~~~~~G-ad~i~vs~-~gg~~~-~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~ 312 (323)
.+.++...+.| +|+|.+.. +.|... ...+..++.+.++++... ++||.++||| +.+.+.+.+++|||.+.+|+++
T Consensus 128 ~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~-~~~I~a~GGI-~~e~i~~l~~aGad~vvvgsai 205 (229)
T PLN02334 128 VEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYP-ELDIEVDGGV-GPSTIDKAAEAGANVIVAGSAV 205 (229)
T ss_pred HHHHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhCC-CCcEEEeCCC-CHHHHHHHHHcCCCEEEEChHH
Confidence 45555565664 99996532 222211 123445677777776543 5799999999 7899999999999999999999
Q ss_pred ccCcchhh
Q 020636 313 CQCPLTEK 320 (323)
Q Consensus 313 ~~~~~~~~ 320 (323)
+..++.++
T Consensus 206 ~~~~d~~~ 213 (229)
T PLN02334 206 FGAPDYAE 213 (229)
T ss_pred hCCCCHHH
Confidence 88776543
No 201
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.80 E-value=0.00011 Score=67.73 Aligned_cols=79 Identities=16% Similarity=0.217 Sum_probs=64.4
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+-|+...+.|++.+.+..-.+. .....+.++.+.++.+.+ .+||+++|||++.+|+.+++.+||+.|.+|+.++.+
T Consensus 33 ~~~a~~~~~~g~~~l~i~Dl~~~-~~~~~~n~~~i~~i~~~~--~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~~~ 109 (258)
T PRK01033 33 INAVRIFNEKEVDELIVLDIDAS-KRGSEPNYELIENLASEC--FMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAALED 109 (258)
T ss_pred HHHHHHHHHcCCCEEEEEECCCC-cCCCcccHHHHHHHHHhC--CCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHhcC
Confidence 45578888999999988543221 112356789999998876 799999999999999999999999999999988877
Q ss_pred cc
Q 020636 316 PL 317 (323)
Q Consensus 316 ~~ 317 (323)
|.
T Consensus 110 ~~ 111 (258)
T PRK01033 110 PD 111 (258)
T ss_pred HH
Confidence 64
No 202
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=97.78 E-value=0.00017 Score=66.33 Aligned_cols=93 Identities=22% Similarity=0.267 Sum_probs=65.6
Q ss_pred HHHHHHhcCCCEEEecc--------CCH---HH-HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 217 VKWLQTITKLPILVKGV--------LTA---ED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 217 i~~i~~~~~~pv~vK~i--------~~~---e~-a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
+..+...++.|+++... .+. .. ++.+.++|||+|.++.. ..++.+.++.+.. ++||+
T Consensus 128 i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~~~---------~~~~~l~~~~~~~--~iPVv 196 (258)
T TIGR01949 128 IAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVKTPYT---------GDIDSFRDVVKGC--PAPVV 196 (258)
T ss_pred HHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEeccCC---------CCHHHHHHHHHhC--CCcEE
Confidence 33344446888877421 222 22 46778999999998521 2567788877766 79999
Q ss_pred EecCCC--CHHHHHH----HHHcCCCEEEEccccccCcchhh
Q 020636 285 LDGGVR--RGTDVFK----ALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 285 a~GGI~--~~~di~k----al~lGAd~V~iG~~~~~~~~~~~ 320 (323)
+.|||+ +.+++++ ++++||+++.+|+.++..++-.+
T Consensus 197 a~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~dp~~ 238 (258)
T TIGR01949 197 VAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDDPVG 238 (258)
T ss_pred EecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCCHHH
Confidence 999999 6555544 44899999999999988776443
No 203
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.78 E-value=0.00013 Score=65.77 Aligned_cols=78 Identities=27% Similarity=0.415 Sum_probs=63.1
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+.|+...+.|++.+.+-.-.+. ..+....++.+.++.+.+ .+|+.+.|||++.+|+.+++.+||+.|.+|+.++..
T Consensus 31 ~~~a~~~~~~g~~~l~v~dl~~~-~~g~~~~~~~i~~i~~~~--~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~d 107 (230)
T TIGR00007 31 VEAAKKWEEEGAERIHVVDLDGA-KEGGPVNLPVIKKIVRET--GVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVEN 107 (230)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcc-ccCCCCcHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhhC
Confidence 45578888999999987432221 123445788899998887 799999999999999999999999999999988876
Q ss_pred c
Q 020636 316 P 316 (323)
Q Consensus 316 ~ 316 (323)
|
T Consensus 108 ~ 108 (230)
T TIGR00007 108 P 108 (230)
T ss_pred H
Confidence 5
No 204
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=97.78 E-value=0.0027 Score=56.75 Aligned_cols=167 Identities=19% Similarity=0.183 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHcCCceeecCCCC------CC----HHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecC
Q 020636 89 GEYATARAASAAGTIMTLSSWST------SS----VEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD 158 (323)
Q Consensus 89 ~e~~~a~aa~~~G~~~~vs~~s~------~~----~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd 158 (323)
.++.-.+.+.+.|..-.++|.-+ .+ ++++.+..+++..+|++ ..|.+.+.+..++..+.. ..++|-+
T Consensus 8 Ad~~~i~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~i~~~~~g~vs~qv~-~~~~~~mi~~a~~l~~~~-~~i~iKI- 84 (213)
T TIGR00875 8 ANVEEIKKAAELGILAGVTTNPSLIAKEGRSFWEVLKEIQEAVEGPVSAETI-SLDAEGMVEEAKELAKLA-PNIVVKI- 84 (213)
T ss_pred CCHHHHHHHHhcCCcceEeCCHHHHHhcCCCHHHHHHHHHHhcCCcEEEEEe-eCCHHHHHHHHHHHHHhC-CCeEEEe-
Confidence 35566777777777666666421 22 34455555677889986 456555444444444443 2344332
Q ss_pred CCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHHH
Q 020636 159 TPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED 238 (323)
Q Consensus 159 ~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~ 238 (323)
|.. .. -.+.++.+++. ++++.+-.+.+.+.
T Consensus 85 -P~T----------------------------------~~--------------Gl~A~~~L~~~-Gi~v~~T~vfs~~Q 114 (213)
T TIGR00875 85 -PMT----------------------------------SE--------------GLKAVKILKKE-GIKTNVTLVFSAAQ 114 (213)
T ss_pred -CCC----------------------------------HH--------------HHHHHHHHHHC-CCceeEEEecCHHH
Confidence 210 00 02344555443 78888889999999
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHh---cCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFVSIM 311 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~ 311 (323)
|..+.++|+++|.. +-||--+.+...++.+.++.+.+ +.+..|++ ..+|+..++.+++.+|||.|-+.-.
T Consensus 115 a~~Aa~aGa~yisp--yvgRi~d~g~dg~~~v~~~~~~~~~~~~~tkIla-AS~r~~~~v~~~~~~G~d~vTip~~ 187 (213)
T TIGR00875 115 ALLAAKAGATYVSP--FVGRLDDIGGDGMKLIEEVKTIFENHAPDTEVIA-ASVRHPRHVLEAALIGADIATMPLD 187 (213)
T ss_pred HHHHHHcCCCEEEe--ecchHHHcCCCHHHHHHHHHHHHHHcCCCCEEEE-eccCCHHHHHHHHHcCCCEEEcCHH
Confidence 99999999998865 33443344445667777766654 23567666 5599999999999999999988743
No 205
>PRK08005 epimerase; Validated
Probab=97.78 E-value=0.0023 Score=57.08 Aligned_cols=143 Identities=15% Similarity=0.137 Sum_probs=88.8
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
..|...+.+.+++++++|++.+ ++|.-- .+| +| +-.
T Consensus 9 ~ad~~~l~~el~~l~~~g~d~l--HiDvMD---------G~F-VP--------------------------------N~t 44 (210)
T PRK08005 9 SADPLRYAEALTALHDAPLGSL--HLDIED---------TSF-IN--------------------------------NIT 44 (210)
T ss_pred hCCHHHHHHHHHHHHHCCCCEE--EEeccC---------CCc-CC--------------------------------ccc
Confidence 4677778888999999998865 444311 112 11 112
Q ss_pred cCHHHHHHHHHhcCCCEEEec-cCCHHH-HHHHHHcCCCEEEEcCC---------------CC---------CC------
Q 020636 212 LSWKDVKWLQTITKLPILVKG-VLTAED-ARIAVQAGAAGIIVSNH---------------GA---------RQ------ 259 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~-i~~~e~-a~~~~~~Gad~i~vs~~---------------gg---------~~------ 259 (323)
+..+.++++|+.++.|+=+.. +.+++. .+...++|+|.|.++-- |. +.
T Consensus 45 fG~~~i~~l~~~t~~~~DvHLMv~~P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~ 124 (210)
T PRK08005 45 FGMKTIQAVAQQTRHPLSFHLMVSSPQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRY 124 (210)
T ss_pred cCHHHHHHHHhcCCCCeEEEeccCCHHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHH
Confidence 334567777777777766663 344544 56667778887776321 10 00
Q ss_pred ----CC-----------CC----cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 260 ----LD-----------YV----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 260 ----~~-----------~~----~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
.| ++ +..++-+.++++... ...|-+||||. .+-+.++.++|||.+.+|+.+++.+++++
T Consensus 125 ~l~~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~-~~~I~VDGGI~-~~~i~~l~~aGad~~V~GsaiF~~~d~~~ 202 (210)
T PRK08005 125 LALQLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFP-AAECWADGGIT-LRAARLLAAAGAQHLVIGRALFTTANYDV 202 (210)
T ss_pred HHHhcCEEEEEEecCCCccceecHHHHHHHHHHHHhcc-cCCEEEECCCC-HHHHHHHHHCCCCEEEEChHhhCCCCHHH
Confidence 01 11 233444555544432 34799999997 56677888999999999999988766554
No 206
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=97.76 E-value=0.00031 Score=62.60 Aligned_cols=102 Identities=20% Similarity=0.176 Sum_probs=76.5
Q ss_pred HHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcCCCCCC--CCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 020636 217 VKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (323)
Q Consensus 217 i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~ 293 (323)
+...++..+-..++. .+.+.|+++.+.+.|+|+|.++.-..+. .+..+..++.+..+.+.. ++|+++-||| +.+
T Consensus 94 ~~~ar~~~~~~~iIG~S~h~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~--~iP~vAIGGi-~~~ 170 (211)
T COG0352 94 LAEARELLGPGLIIGLSTHDLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELV--NIPVVAIGGI-NLE 170 (211)
T ss_pred hHHHHHhcCCCCEEEeecCCHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhC--CCCEEEEcCC-CHH
Confidence 344555554444555 3578999999999999999886544432 233344578888888776 6999999999 568
Q ss_pred HHHHHHHcCCCEEEEccccccCcchhhh
Q 020636 294 DVFKALALGASGIFVSIMPCQCPLTEKI 321 (323)
Q Consensus 294 di~kal~lGAd~V~iG~~~~~~~~~~~~ 321 (323)
.+.+.++.||++|.+-|+++..++.++.
T Consensus 171 nv~~v~~~Ga~gVAvvsai~~a~d~~~a 198 (211)
T COG0352 171 NVPEVLEAGADGVAVVSAITSAADPAAA 198 (211)
T ss_pred HHHHHHHhCCCeEEehhHhhcCCCHHHH
Confidence 8999999999999999999988776543
No 207
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=97.72 E-value=0.00058 Score=60.37 Aligned_cols=73 Identities=29% Similarity=0.272 Sum_probs=51.3
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCCC---------CCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEE
Q 020636 237 EDARIAVQAGAAGIIVSNHGARQL---------DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 307 (323)
Q Consensus 237 e~a~~~~~~Gad~i~vs~~gg~~~---------~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~ 307 (323)
+-|..+.++|+|.|-.-|...... ....|++....+|.+++ ++||+.+.|+..-.-= -|+++||.+|+
T Consensus 136 ~LA~~L~~~GaDiIQTEGgtss~p~~~g~lglIekaapTLAaay~ISr~v--~iPVlcASGlS~vT~P-mAiaaGAsGVG 212 (242)
T PF04481_consen 136 QLAEDLVKAGADIIQTEGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAV--SIPVLCASGLSAVTAP-MAIAAGASGVG 212 (242)
T ss_pred HHHHHHHHhCCcEEEcCCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhcc--CCceEeccCcchhhHH-HHHHcCCcccc
Confidence 337788888888876533211111 11245666666777777 8999999999886644 47899999999
Q ss_pred Ecccc
Q 020636 308 VSIMP 312 (323)
Q Consensus 308 iG~~~ 312 (323)
+|++.
T Consensus 213 VGSav 217 (242)
T PF04481_consen 213 VGSAV 217 (242)
T ss_pred hhHHh
Confidence 99875
No 208
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=97.72 E-value=0.0035 Score=56.45 Aligned_cols=144 Identities=22% Similarity=0.233 Sum_probs=92.2
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
..|...+.+.++++++.|++.+ ++|.=- ..| +| +-.
T Consensus 12 ~ad~~~l~~~i~~l~~~g~d~l--HiDimD---------G~F-VP--------------------------------N~t 47 (223)
T PRK08745 12 SADFARLGEEVDNVLKAGADWV--HFDVMD---------NHY-VP--------------------------------NLT 47 (223)
T ss_pred hcCHHHHHHHHHHHHHcCCCEE--EEeccc---------Ccc-CC--------------------------------Ccc
Confidence 4677778889999999998865 444210 112 11 122
Q ss_pred cCHHHHHHHHHh-cCCCEEEec-cCCHHH-HHHHHHcCCCEEEEcCC---------------CC---------CC-----
Q 020636 212 LSWKDVKWLQTI-TKLPILVKG-VLTAED-ARIAVQAGAAGIIVSNH---------------GA---------RQ----- 259 (323)
Q Consensus 212 ~~~~~i~~i~~~-~~~pv~vK~-i~~~e~-a~~~~~~Gad~i~vs~~---------------gg---------~~----- 259 (323)
+..+.++++|+. ++.|+=+.. +.+++. +....++|+|.|.++-- |- +.
T Consensus 48 fg~~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~ 127 (223)
T PRK08745 48 IGPMVCQALRKHGITAPIDVHLMVEPVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILD 127 (223)
T ss_pred cCHHHHHHHHhhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHH
Confidence 446678888887 577877774 345544 66777888888877321 10 00
Q ss_pred -----CC-----------CC----cchHHHHHHHHHHhc---CCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 260 -----LD-----------YV----PATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 260 -----~~-----------~~----~~~~~~l~~i~~~~~---~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
.| ++ +..++-+.++++... .++.|-+||||. .+.+.+..++|||.+.+||.+++.+
T Consensus 128 ~~l~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~-~eti~~l~~aGaDi~V~GSaiF~~~ 206 (223)
T PRK08745 128 WVLPELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVK-ADNIGAIAAAGADTFVAGSAIFNAP 206 (223)
T ss_pred HHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEChhhhCCC
Confidence 01 11 234455555554432 147799999997 5678888899999999999998876
Q ss_pred chhh
Q 020636 317 LTEK 320 (323)
Q Consensus 317 ~~~~ 320 (323)
+.++
T Consensus 207 d~~~ 210 (223)
T PRK08745 207 DYAQ 210 (223)
T ss_pred CHHH
Confidence 6543
No 209
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.70 E-value=0.00059 Score=63.43 Aligned_cols=88 Identities=24% Similarity=0.162 Sum_probs=68.9
Q ss_pred HHHHHHHHhcCCC-EEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 020636 215 KDVKWLQTITKLP-ILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (323)
Q Consensus 215 ~~i~~i~~~~~~p-v~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~ 293 (323)
+.++.+|+..+-. ++--.+.+.++++.+.+.|+|+|.+.+ -..+.+.++.+.++.++|+.+.||| +.+
T Consensus 176 ~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~gaDyI~lD~----------~~~e~l~~~~~~~~~~i~i~AiGGI-t~~ 244 (277)
T PRK08072 176 KAVTSVREKLGHMVKIEVETETEEQVREAVAAGADIIMFDN----------RTPDEIREFVKLVPSAIVTEASGGI-TLE 244 (277)
T ss_pred HHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHhcCCCceEEEECCC-CHH
Confidence 4577888877532 232345899999999999999998843 2346677777766446889999999 889
Q ss_pred HHHHHHHcCCCEEEEccccc
Q 020636 294 DVFKALALGASGIFVSIMPC 313 (323)
Q Consensus 294 di~kal~lGAd~V~iG~~~~ 313 (323)
.+.+..+.|+|++.+|.+..
T Consensus 245 ni~~~a~~Gvd~IAvg~l~~ 264 (277)
T PRK08072 245 NLPAYGGTGVDYISLGFLTH 264 (277)
T ss_pred HHHHHHHcCCCEEEEChhhc
Confidence 99999999999999998765
No 210
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=97.70 E-value=0.00017 Score=65.21 Aligned_cols=69 Identities=25% Similarity=0.298 Sum_probs=55.7
Q ss_pred HcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCC-eEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 244 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI-PVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 244 ~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~-pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
-.|...+.+...++ .+.+.+.+.+.++++.+ +. ||++.||||+.+++.+++..|||+|.+|+.+..+|.
T Consensus 152 ~~g~~~vYle~gs~---~g~~~~~e~I~~v~~~~--~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~d~~ 221 (232)
T PRK04169 152 YLGMPIVYLEYGGG---AGDPVPPEMVKAVKKAL--DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEEDPK 221 (232)
T ss_pred HcCCCeEEEECCCC---CCCCCCHHHHHHHHHhc--CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhhCHH
Confidence 45766666643222 23456788899998877 66 999999999999999999999999999999988776
No 211
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.70 E-value=0.00011 Score=67.21 Aligned_cols=71 Identities=23% Similarity=0.160 Sum_probs=61.2
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+.|+...+.|++.+-+-.- +.+..+.+.++.+.+ .+||.+.||||+ +++.+++.+||+.|.+|+.++..
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL-------g~~n~~~i~~i~~~~--~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS~av~~ 110 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML-------GPNNDDAAKEALHAY--PGGLQVGGGIND-TNAQEWLDEGASHVIVTSWLFTK 110 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC-------CCCcHHHHHHHHHhC--CCCEEEeCCcCH-HHHHHHHHcCCCEEEECcHHHhC
Confidence 57799999999999976432 223889999999887 799999999998 99999999999999999998876
Q ss_pred c
Q 020636 316 P 316 (323)
Q Consensus 316 ~ 316 (323)
|
T Consensus 111 ~ 111 (253)
T TIGR02129 111 G 111 (253)
T ss_pred C
Confidence 4
No 212
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=97.70 E-value=0.0021 Score=58.17 Aligned_cols=143 Identities=17% Similarity=0.119 Sum_probs=93.3
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
..|...+.+.++++++.|++.+ ++|.-- ..| +| +-.
T Consensus 15 ~~d~~~l~~~~~~l~~~~~~~~--H~DimD---------g~f-vp--------------------------------n~~ 50 (228)
T PTZ00170 15 AADFSKLADEAQDVLSGGADWL--HVDVMD---------GHF-VP--------------------------------NLS 50 (228)
T ss_pred hcCHHHHHHHHHHHHHcCCCEE--EEeccc---------Ccc-CC--------------------------------CcC
Confidence 4677778888999999998765 444211 111 01 112
Q ss_pred cCHHHHHHHHHhc-CCCEEEecc-CCHHH-HHHHHHcCCCEEEEcCCCCCC-C---------------------------
Q 020636 212 LSWKDVKWLQTIT-KLPILVKGV-LTAED-ARIAVQAGAAGIIVSNHGARQ-L--------------------------- 260 (323)
Q Consensus 212 ~~~~~i~~i~~~~-~~pv~vK~i-~~~e~-a~~~~~~Gad~i~vs~~gg~~-~--------------------------- 260 (323)
+..+.++++|+.+ +.|+-+|.- .+++. ++.+.++|+|.|.++.-++.. +
T Consensus 51 ~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l 130 (228)
T PTZ00170 51 FGPPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVL 130 (228)
T ss_pred cCHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHH
Confidence 3456788998887 788888864 55554 567788999999885322211 0
Q ss_pred ---------------------CCC---cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 261 ---------------------DYV---PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 261 ---------------------~~~---~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
++. +..++-+.++++..+ ...|.++|||+. +.+.++..+|||.+.+||++...+
T Consensus 131 ~~~l~~~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~-~~~I~VdGGI~~-~ti~~~~~aGad~iVvGsaI~~a~ 208 (228)
T PTZ00170 131 FPLIDTDLVDMVLVMTVEPGFGGQSFMHDMMPKVRELRKRYP-HLNIQVDGGINL-ETIDIAADAGANVIVAGSSIFKAK 208 (228)
T ss_pred HHHHccchhhhHHhhhcccCCCCcEecHHHHHHHHHHHHhcc-cCeEEECCCCCH-HHHHHHHHcCCCEEEEchHHhCCC
Confidence 000 112333444444332 478999999986 577788899999999999998877
Q ss_pred chhh
Q 020636 317 LTEK 320 (323)
Q Consensus 317 ~~~~ 320 (323)
++++
T Consensus 209 d~~~ 212 (228)
T PTZ00170 209 DRKQ 212 (228)
T ss_pred CHHH
Confidence 6544
No 213
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=97.69 E-value=0.00057 Score=63.36 Aligned_cols=90 Identities=24% Similarity=0.251 Sum_probs=67.9
Q ss_pred HHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcC--CCeEEEecCCCC
Q 020636 215 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG--RIPVFLDGGVRR 291 (323)
Q Consensus 215 ~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~--~~pvia~GGI~~ 291 (323)
..++.+|+..+ ...+.-.+.+.+++..+.++|+|+|.+.+- ..+.+.++.+.++. ++||.++|||.
T Consensus 169 ~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~gaD~I~ld~~----------~~e~l~~~v~~i~~~~~i~i~asGGIt- 237 (269)
T cd01568 169 EAVKRARAAAPFEKKIEVEVETLEEAEEALEAGADIIMLDNM----------SPEELKEAVKLLKGLPRVLLEASGGIT- 237 (269)
T ss_pred HHHHHHHHhCCCCCeEEEecCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhccCCCeEEEEECCCC-
Confidence 34788888775 334444678999999999999999988652 22444554444433 78999999995
Q ss_pred HHHHHHHHHcCCCEEEEccccccC
Q 020636 292 GTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 292 ~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+.+.+..+.|||++.+|......
T Consensus 238 ~~ni~~~a~~Gad~Isvgal~~s~ 261 (269)
T cd01568 238 LENIRAYAETGVDVISTGALTHSA 261 (269)
T ss_pred HHHHHHHHHcCCCEEEEcHHHcCC
Confidence 788999999999999999877655
No 214
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=97.68 E-value=0.00029 Score=62.79 Aligned_cols=79 Identities=20% Similarity=0.299 Sum_probs=61.0
Q ss_pred cCCHHHHHHHHHcCCCEEEEcCCC-CCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccc
Q 020636 233 VLTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIM 311 (323)
Q Consensus 233 i~~~e~a~~~~~~Gad~i~vs~~g-g~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~ 311 (323)
..++-.|+++.+.||..|.--+.. |+ ..+.-+...|.-|.+.. ++|||+|-||.++.|+..++++|||+|++-++
T Consensus 138 ~dD~v~arrLee~GcaavMPl~aPIGS--g~G~~n~~~l~iiie~a--~VPviVDAGiG~pSdAa~aMElG~DaVL~NTA 213 (262)
T COG2022 138 TDDPVLARRLEEAGCAAVMPLGAPIGS--GLGLQNPYNLEIIIEEA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNTA 213 (262)
T ss_pred CCCHHHHHHHHhcCceEeccccccccC--CcCcCCHHHHHHHHHhC--CCCEEEeCCCCChhHHHHHHhcccceeehhhH
Confidence 356777999999999888532110 11 11344567777777777 89999999999999999999999999999987
Q ss_pred cccC
Q 020636 312 PCQC 315 (323)
Q Consensus 312 ~~~~ 315 (323)
....
T Consensus 214 iA~A 217 (262)
T COG2022 214 IARA 217 (262)
T ss_pred hhcc
Confidence 7553
No 215
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.67 E-value=7.5e-05 Score=67.54 Aligned_cols=80 Identities=23% Similarity=0.308 Sum_probs=61.7
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+.|+...+.|++.+.+-.-.+ ...+.+...+.+.++.+.+ .+||.+.||||+.+|+.+++.+||+.|.+|+..+.+
T Consensus 32 ~~~a~~~~~~g~~~l~ivDLda-a~~g~~~n~~~i~~i~~~~--~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~~ 108 (229)
T PF00977_consen 32 VEVAKAFNEQGADELHIVDLDA-AKEGRGSNLELIKEIAKET--GIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALED 108 (229)
T ss_dssp HHHHHHHHHTT-SEEEEEEHHH-HCCTHHHHHHHHHHHHHHS--SSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHHC
T ss_pred HHHHHHHHHcCCCEEEEEEccC-cccCchhHHHHHHHHHhcC--CccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhhc
Confidence 3557777789999998743111 1233466788999999887 699999999999999999999999999999998887
Q ss_pred cch
Q 020636 316 PLT 318 (323)
Q Consensus 316 ~~~ 318 (323)
|.+
T Consensus 109 ~~~ 111 (229)
T PF00977_consen 109 PEL 111 (229)
T ss_dssp CHH
T ss_pred hhH
Confidence 754
No 216
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.66 E-value=0.00024 Score=64.37 Aligned_cols=77 Identities=22% Similarity=0.232 Sum_probs=63.1
Q ss_pred CHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 235 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 235 ~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
..+-|+...+.|+|.+.+..-.+. .+.....+.+.++.+.+ .+||.+.||||+.+|+.+++.+||+.|.+||..+.
T Consensus 37 p~~~a~~~~~~g~~~l~i~DLd~~--~~~~~n~~~i~~i~~~~--~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~~ 112 (233)
T cd04723 37 PLDVARAYKELGFRGLYIADLDAI--MGRGDNDEAIRELAAAW--PLGLWVDGGIRSLENAQEWLKRGASRVIVGTETLP 112 (233)
T ss_pred HHHHHHHHHHCCCCEEEEEeCccc--cCCCccHHHHHHHHHhC--CCCEEEecCcCCHHHHHHHHHcCCCeEEEcceecc
Confidence 346688888999999987542221 13456788999998877 79999999999999999999999999999998766
Q ss_pred C
Q 020636 315 C 315 (323)
Q Consensus 315 ~ 315 (323)
+
T Consensus 113 ~ 113 (233)
T cd04723 113 S 113 (233)
T ss_pred c
Confidence 5
No 217
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=97.65 E-value=0.00023 Score=63.83 Aligned_cols=73 Identities=21% Similarity=0.223 Sum_probs=59.3
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcch
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~ 318 (323)
|..+...|...|.+. ..|. ..+.+.+..+++.+. ++||+..|||||.+++.+++.+|||.|.+|+.+..+|.+
T Consensus 141 A~aae~~g~~ivyLe-~SG~-----~~~~e~I~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~~p~~ 213 (219)
T cd02812 141 ALAAEYLGMPIVYLE-YSGA-----YGPPEVVRAVKKVLG-DTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEEDPNA 213 (219)
T ss_pred HHHHHHcCCeEEEeC-CCCC-----cCCHHHHHHHHHhcC-CCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhCCHHH
Confidence 567778898888776 3232 256778888887653 689999999999999999999999999999999887654
No 218
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=97.64 E-value=0.00043 Score=60.15 Aligned_cols=77 Identities=25% Similarity=0.319 Sum_probs=58.9
Q ss_pred ccCCHHHHHHHHHcCCCEEEEcCCCCCC--CCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 232 GVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 232 ~i~~~e~a~~~~~~Gad~i~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
.+.+.++++.+.+.|+|++.++.--.+. .+..+..++.+.++.+.. ++||++-||| +.+++.+++.+||++|.+-
T Consensus 101 S~h~~~e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~--~~pv~AlGGI-~~~~i~~l~~~Ga~gvAvi 177 (180)
T PF02581_consen 101 SCHSLEEAREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARAS--PIPVYALGGI-TPENIPELREAGADGVAVI 177 (180)
T ss_dssp EESSHHHHHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHT--SSCEEEESS---TTTHHHHHHTT-SEEEES
T ss_pred ecCcHHHHHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhC--CCCEEEEcCC-CHHHHHHHHHcCCCEEEEE
Confidence 4688999999999999999997532221 222345678888888877 7999999999 7899999999999999987
Q ss_pred cc
Q 020636 310 IM 311 (323)
Q Consensus 310 ~~ 311 (323)
++
T Consensus 178 ~a 179 (180)
T PF02581_consen 178 SA 179 (180)
T ss_dssp HH
T ss_pred ee
Confidence 64
No 219
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=97.63 E-value=0.0047 Score=55.06 Aligned_cols=145 Identities=24% Similarity=0.266 Sum_probs=95.7
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
..|.....+.+++++++|++.+ ++|.= -.+| +| +-.
T Consensus 12 saD~~~l~~el~~~~~agad~i--H~DVM---------DghF-VP--------------------------------NiT 47 (220)
T COG0036 12 SADFARLGEELKALEAAGADLI--HIDVM---------DGHF-VP--------------------------------NIT 47 (220)
T ss_pred hCCHhHHHHHHHHHHHcCCCEE--EEecc---------CCCc-CC--------------------------------Ccc
Confidence 4677778889999999998865 44421 0122 11 112
Q ss_pred cCHHHHHHHHHhcCCCEEEec-cCCHHH-HHHHHHcCCCEEEEcC----C-----------C---------CCCC-----
Q 020636 212 LSWKDVKWLQTITKLPILVKG-VLTAED-ARIAVQAGAAGIIVSN----H-----------G---------ARQL----- 260 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~-i~~~e~-a~~~~~~Gad~i~vs~----~-----------g---------g~~~----- 260 (323)
+-...++++++.++.|+=+.. +.+++. +....++|||.|.++- | | ++.+
T Consensus 48 fGp~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~ 127 (220)
T COG0036 48 FGPPVVKALRKITDLPLDVHLMVENPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEP 127 (220)
T ss_pred cCHHHHHHHhhcCCCceEEEEecCCHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHH
Confidence 335578888888788888774 455554 6777889999988742 1 1 0100
Q ss_pred -----C-----------CC----cchHHHHHHHHHHhcC--CCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcch
Q 020636 261 -----D-----------YV----PATIMALEEVVKATQG--RIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 261 -----~-----------~~----~~~~~~l~~i~~~~~~--~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~ 318 (323)
| ++ +..++-++++++.... ++-|-+||||.. +-+-++.++|||.++.||.+++.++|
T Consensus 128 ~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~~-~t~~~~~~AGad~~VaGSalF~~~d~ 206 (220)
T COG0036 128 VLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGINL-ETIKQLAAAGADVFVAGSALFGADDY 206 (220)
T ss_pred HHhhCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcCH-HHHHHHHHcCCCEEEEEEEEeCCccH
Confidence 1 12 3345556666665532 567899999964 55677777999999999999999887
Q ss_pred hhh
Q 020636 319 EKI 321 (323)
Q Consensus 319 ~~~ 321 (323)
.+.
T Consensus 207 ~~~ 209 (220)
T COG0036 207 KAT 209 (220)
T ss_pred HHH
Confidence 654
No 220
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.63 E-value=0.00032 Score=63.60 Aligned_cols=79 Identities=20% Similarity=0.127 Sum_probs=63.2
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+-|+...+.|+|.+.+-.-.+. .+.....+.+.++.+.. ..|+...|||||.+|+.+++.+||+.|.+||..+.+
T Consensus 33 ~~~a~~~~~~ga~~lhivDLd~a--~~~~~n~~~i~~i~~~~--~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~~ 108 (232)
T PRK13586 33 IEIASKLYNEGYTRIHVVDLDAA--EGVGNNEMYIKEISKIG--FDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFTN 108 (232)
T ss_pred HHHHHHHHHCCCCEEEEEECCCc--CCCcchHHHHHHHHhhC--CCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhCC
Confidence 45678888999999987543322 13455678888888744 359999999999999999999999999999999888
Q ss_pred cch
Q 020636 316 PLT 318 (323)
Q Consensus 316 ~~~ 318 (323)
|.+
T Consensus 109 p~~ 111 (232)
T PRK13586 109 FNL 111 (232)
T ss_pred HHH
Confidence 753
No 221
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.63 E-value=0.00032 Score=63.99 Aligned_cols=78 Identities=21% Similarity=0.166 Sum_probs=63.2
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+-|+...+.|+|.+.+-.--+ ...+.+...+.+.++.+.+ .||.+.|||||.+|+.+++.+||+.|.+||..+.+
T Consensus 33 ~~~A~~~~~~ga~~lhivDLd~-a~~g~~~n~~~i~~i~~~~---~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~~ 108 (241)
T PRK14114 33 AELVEKLIEEGFTLIHVVDLSK-AIENSVENLPVLEKLSEFA---EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLED 108 (241)
T ss_pred HHHHHHHHHCCCCEEEEEECCC-cccCCcchHHHHHHHHhhc---CcEEEecCCCCHHHHHHHHHCCCCEEEECchhhCC
Confidence 4558888899999998743211 1223456788999998875 59999999999999999999999999999999988
Q ss_pred cc
Q 020636 316 PL 317 (323)
Q Consensus 316 ~~ 317 (323)
|.
T Consensus 109 p~ 110 (241)
T PRK14114 109 PS 110 (241)
T ss_pred HH
Confidence 84
No 222
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.63 E-value=0.00075 Score=62.66 Aligned_cols=88 Identities=22% Similarity=0.293 Sum_probs=66.3
Q ss_pred HHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHh-----cCCCeEEEecCC
Q 020636 215 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFLDGGV 289 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~-----~~~~pvia~GGI 289 (323)
+.++.+|+..+..-+.-.+.+.++++.+.++|+|.|.+.|. +.+.+.++.+.+ +.++.+.++|||
T Consensus 171 ~av~~~r~~~~~~kIeVEv~~leea~~a~~agaDiI~LDn~----------~~e~l~~~v~~l~~~~~~~~~~leaSGGI 240 (278)
T PRK08385 171 EAIRRAKEFSVYKVVEVEVESLEDALKAAKAGADIIMLDNM----------TPEEIREVIEALKREGLRERVKIEVSGGI 240 (278)
T ss_pred HHHHHHHHhCCCCcEEEEeCCHHHHHHHHHcCcCEEEECCC----------CHHHHHHHHHHHHhcCcCCCEEEEEECCC
Confidence 34777777653222334578999999999999999988763 234444444433 236889999999
Q ss_pred CCHHHHHHHHHcCCCEEEEccccc
Q 020636 290 RRGTDVFKALALGASGIFVSIMPC 313 (323)
Q Consensus 290 ~~~~di~kal~lGAd~V~iG~~~~ 313 (323)
+.+.+.+....|+|.+.+|....
T Consensus 241 -~~~ni~~yA~tGvD~Is~galt~ 263 (278)
T PRK08385 241 -TPENIEEYAKLDVDVISLGALTH 263 (278)
T ss_pred -CHHHHHHHHHcCCCEEEeChhhc
Confidence 89999999999999999999776
No 223
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=97.62 E-value=0.004 Score=55.67 Aligned_cols=93 Identities=20% Similarity=0.202 Sum_probs=69.3
Q ss_pred HHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcC---CCeEEEecCCCC
Q 020636 215 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVRR 291 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~---~~pvia~GGI~~ 291 (323)
+.++.+++. ++++-+-.+.+.+.|..+.++|+++|.. +-||--+.+...++.+.++.+.+.. +..|++ .|+++
T Consensus 92 ~ai~~L~~~-gi~v~~T~V~s~~Qa~~Aa~AGA~yvsP--~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~-As~r~ 167 (211)
T cd00956 92 KAIKKLSEE-GIKTNVTAIFSAAQALLAAKAGATYVSP--FVGRIDDLGGDGMELIREIRTIFDNYGFDTKILA-ASIRN 167 (211)
T ss_pred HHHHHHHHc-CCceeeEEecCHHHHHHHHHcCCCEEEE--ecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEe-cccCC
Confidence 345566554 7888888999999999999999998543 5555444455667777777665521 344444 66999
Q ss_pred HHHHHHHHHcCCCEEEEccc
Q 020636 292 GTDVFKALALGASGIFVSIM 311 (323)
Q Consensus 292 ~~di~kal~lGAd~V~iG~~ 311 (323)
..++..++.+|||.|-+.-.
T Consensus 168 ~~ei~~a~~~Gad~vTv~~~ 187 (211)
T cd00956 168 PQHVIEAALAGADAITLPPD 187 (211)
T ss_pred HHHHHHHHHcCCCEEEeCHH
Confidence 99999999999999999843
No 224
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=97.58 E-value=0.00059 Score=59.35 Aligned_cols=93 Identities=17% Similarity=0.198 Sum_probs=61.3
Q ss_pred CHHHHHHHHHhcCCCEE--Eec---------cCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCC
Q 020636 213 SWKDVKWLQTITKLPIL--VKG---------VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 281 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~--vK~---------i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~ 281 (323)
..++|+.+|+.+++||| +|. ..+.+++..+.++|+|.|-+........ .+..+++.++++.. .
T Consensus 20 ~~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDaT~R~Rp---~~l~~li~~i~~~~---~ 93 (192)
T PF04131_consen 20 GVEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDATDRPRP---ETLEELIREIKEKY---Q 93 (192)
T ss_dssp SHHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-SSSS-S---S-HHHHHHHHHHCT---S
T ss_pred CHHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEecCCCCCC---cCHHHHHHHHHHhC---c
Confidence 46789999999999984 552 1578999999999999999876443221 33345677776543 4
Q ss_pred eEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 282 PVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 282 pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.++ ..|.|-+|...|..+|+|.| |+-|.|.
T Consensus 94 l~M--ADist~ee~~~A~~~G~D~I--~TTLsGY 123 (192)
T PF04131_consen 94 LVM--ADISTLEEAINAAELGFDII--GTTLSGY 123 (192)
T ss_dssp EEE--EE-SSHHHHHHHHHTT-SEE--E-TTTTS
T ss_pred EEe--eecCCHHHHHHHHHcCCCEE--EcccccC
Confidence 444 55899999999999999987 5556664
No 225
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.52 E-value=0.00054 Score=62.57 Aligned_cols=76 Identities=28% Similarity=0.167 Sum_probs=60.1
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcch
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~ 318 (323)
++...+.|++.+.+.---+. .+.+...+.+.++.+.+ .+||.+.|||||.+|+.+++.+||+.|.+||..+.+|.+
T Consensus 37 a~~~~~~g~~~lhivDLd~a--~g~~~n~~~i~~i~~~~--~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~p~~ 112 (243)
T TIGR01919 37 AKWWEQGGAEWIHLVDLDAA--FGGGNNEMMLEEVVKLL--VVVEELSGGRRDDSSLRAALTGGRARVNGGTAALENPWW 112 (243)
T ss_pred HHHHHhCCCeEEEEEECCCC--CCCcchHHHHHHHHHHC--CCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhCCHHH
Confidence 45556778877765321111 13456788999999887 699999999999999999999999999999999888854
No 226
>PRK06801 hypothetical protein; Provisional
Probab=97.49 E-value=0.0064 Score=56.82 Aligned_cols=77 Identities=22% Similarity=0.246 Sum_probs=59.7
Q ss_pred CCHHHHHHHH-HcCCCEEEEcCCCCCCC-CCC-cchHHHHHHHHHHhcCCCeEEEecC--CCCHHHHHHHHHcCCCEEEE
Q 020636 234 LTAEDARIAV-QAGAAGIIVSNHGARQL-DYV-PATIMALEEVVKATQGRIPVFLDGG--VRRGTDVFKALALGASGIFV 308 (323)
Q Consensus 234 ~~~e~a~~~~-~~Gad~i~vs~~gg~~~-~~~-~~~~~~l~~i~~~~~~~~pvia~GG--I~~~~di~kal~lGAd~V~i 308 (323)
.++++|+... +.|+|.+.++-..-+.. ++. ...++.|.++.+.+ ++|+++-|| |. .+++.+++.+|++.|=+
T Consensus 156 T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~--~~PLVlHGGSgi~-~e~~~~~i~~Gi~KINv 232 (286)
T PRK06801 156 TDPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQT--GLPLVLHGGSGIS-DADFRRAIELGIHKINF 232 (286)
T ss_pred CCHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhc--CCCEEEECCCCCC-HHHHHHHHHcCCcEEEe
Confidence 4678998888 89999999953221111 222 35789999998887 799999998 76 57899999999999999
Q ss_pred ccccc
Q 020636 309 SIMPC 313 (323)
Q Consensus 309 G~~~~ 313 (323)
+|.+.
T Consensus 233 ~T~~~ 237 (286)
T PRK06801 233 YTGMS 237 (286)
T ss_pred hhHHH
Confidence 98764
No 227
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=97.49 E-value=0.0045 Score=60.20 Aligned_cols=191 Identities=16% Similarity=0.137 Sum_probs=110.7
Q ss_pred cccceEECcccccccCCcHHHHHHHHHHHHcCCce-eecC-----CCCCCHHHHHhcCC-CceeEEeeecCChHHHHHHH
Q 020636 70 ISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM-TLSS-----WSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLV 142 (323)
Q Consensus 70 ~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~-~vs~-----~s~~~~eei~~~~~-~~~~~QLy~~~d~~~~~~~~ 142 (323)
+.-|.++-++-. .+.+.-+.+++.....+..+ =+|+ +....++++++..+ .+....|.. .|...+. +
T Consensus 170 ~~~p~L~vALD~---~~~~~A~~i~~~l~~~~~~~iKvG~~L~~~~G~~iVk~Lr~~~~~~~I~~DLK~-~Di~~~v--v 243 (391)
T PRK13307 170 WDPPYLQVALDL---PDLEEVERVLSQLPKSDHIIIEAGTPLIKKFGLEVISKIREVRPDAFIVADLKT-LDTGNLE--A 243 (391)
T ss_pred cccceEEEecCC---CCHHHHHHHHHhcccccceEEEECHHHHHHhCHHHHHHHHHhCCCCeEEEEecc-cChhhHH--H
Confidence 345666665432 22333345555555443332 2443 12234566666544 356666654 4655432 6
Q ss_pred HHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHH
Q 020636 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQT 222 (323)
Q Consensus 143 ~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 222 (323)
+.+.++|++.+.++.-.+. ....+.++.+++
T Consensus 244 ~~~a~aGAD~vTVH~ea~~-------------------------------------------------~ti~~ai~~akk 274 (391)
T PRK13307 244 RMAADATADAVVISGLAPI-------------------------------------------------STIEKAIHEAQK 274 (391)
T ss_pred HHHHhcCCCEEEEeccCCH-------------------------------------------------HHHHHHHHHHHH
Confidence 6777889888876632110 001123455555
Q ss_pred hcCCCEEEec--cCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHH
Q 020636 223 ITKLPILVKG--VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300 (323)
Q Consensus 223 ~~~~pv~vK~--i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~ 300 (323)
. +.-+.+-. ..++.+.......++|.|.+.. +....+..+.++-+.++++. ..+++|.++|||. .+++.+++.
T Consensus 275 ~-GikvgVD~lnp~tp~e~i~~l~~~vD~Vllht--~vdp~~~~~~~~kI~~ikk~-~~~~~I~VdGGI~-~eti~~l~~ 349 (391)
T PRK13307 275 T-GIYSILDMLNVEDPVKLLESLKVKPDVVELHR--GIDEEGTEHAWGNIKEIKKA-GGKILVAVAGGVR-VENVEEALK 349 (391)
T ss_pred c-CCEEEEEEcCCCCHHHHHHHhhCCCCEEEEcc--ccCCCcccchHHHHHHHHHh-CCCCcEEEECCcC-HHHHHHHHH
Confidence 3 44344422 2344443333488999998852 11111234566777777765 2368999999999 788989999
Q ss_pred cCCCEEEEccccccCcchhh
Q 020636 301 LGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 301 lGAd~V~iG~~~~~~~~~~~ 320 (323)
+|||.+.+||.+.+.++.++
T Consensus 350 aGADivVVGsaIf~a~Dp~~ 369 (391)
T PRK13307 350 AGADILVVGRAITKSKDVRR 369 (391)
T ss_pred cCCCEEEEeHHHhCCCCHHH
Confidence 99999999999988776544
No 228
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=97.49 E-value=0.015 Score=54.36 Aligned_cols=77 Identities=23% Similarity=0.335 Sum_probs=60.6
Q ss_pred cCCHHHHHHHHH-cCCCEEEEcC---CCCCCCCCCcchHHHHHHHHHHhcCCCeEEEec--CCCCHHHHHHHHHcCCCEE
Q 020636 233 VLTAEDARIAVQ-AGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDG--GVRRGTDVFKALALGASGI 306 (323)
Q Consensus 233 i~~~e~a~~~~~-~Gad~i~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~G--GI~~~~di~kal~lGAd~V 306 (323)
..++|+|+.+.+ .|+|++.++- ||-.. ....-.++.|.++.+.+ ++|+++=| ||.. +++.+++.+|++.|
T Consensus 152 ~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~-~~~~l~~e~L~~i~~~~--~iPlv~hGgSGi~~-e~i~~~i~~Gi~ki 227 (282)
T TIGR01859 152 LADPDEAEQFVKETGVDYLAAAIGTSHGKYK-GEPGLDFERLKEIKELT--NIPLVLHGASGIPE-EQIKKAIKLGIAKI 227 (282)
T ss_pred cCCHHHHHHHHHHHCcCEEeeccCccccccC-CCCccCHHHHHHHHHHh--CCCEEEECCCCCCH-HHHHHHHHcCCCEE
Confidence 358999999996 9999999752 43211 11234588999999988 79999999 8864 67999999999999
Q ss_pred EEccccc
Q 020636 307 FVSIMPC 313 (323)
Q Consensus 307 ~iG~~~~ 313 (323)
-++|-+.
T Consensus 228 Nv~T~l~ 234 (282)
T TIGR01859 228 NIDTDCR 234 (282)
T ss_pred EECcHHH
Confidence 9999764
No 229
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=97.48 E-value=0.015 Score=53.34 Aligned_cols=77 Identities=21% Similarity=0.233 Sum_probs=58.7
Q ss_pred HHHHHHHHHcC-CCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 236 AEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 236 ~e~a~~~~~~G-ad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
.+.++.+...| +|+|+|++.+- +.+.+++.|.++++..+ +.||+..||+ +++.+.+++.. ||+|.+||.|-.
T Consensus 160 ~e~a~~~~~~~~aDavivtG~~T----G~~~d~~~l~~vr~~~~-~~PvllggGv-t~eNv~e~l~~-adGviVgS~~K~ 232 (257)
T TIGR00259 160 ESIALDTVERGLADAVILSGKTT----GTEVDLELLKLAKETVK-DTPVLAGSGV-NLENVEELLSI-ADGVIVATTIKK 232 (257)
T ss_pred HHHHHHHHHhcCCCEEEECcCCC----CCCCCHHHHHHHHhccC-CCeEEEECCC-CHHHHHHHHhh-CCEEEECCCccc
Confidence 35577777666 99999988542 33578888988877553 6899999998 56888888887 999999999875
Q ss_pred Ccchh
Q 020636 315 CPLTE 319 (323)
Q Consensus 315 ~~~~~ 319 (323)
...|+
T Consensus 233 ~G~~~ 237 (257)
T TIGR00259 233 DGVFN 237 (257)
T ss_pred CCccC
Confidence 44333
No 230
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=97.47 E-value=0.0099 Score=55.24 Aligned_cols=93 Identities=14% Similarity=0.095 Sum_probs=68.5
Q ss_pred HHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHh---cCCCeEEEecCCCC
Q 020636 215 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRR 291 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~~pvia~GGI~~ 291 (323)
+.++.+|+..+...+.-.+.+.++++.+.++|+|.|.+.|. +.+.+.++.+.+ ..++.|.++||| +
T Consensus 177 ~av~~~r~~~~~~kIeVEv~tleea~ea~~~GaDiI~lDn~----------~~e~l~~~v~~l~~~~~~~~leasGGI-~ 245 (277)
T TIGR01334 177 GAIGRLKQTAPERKITVEADTIEQALTVLQASPDILQLDKF----------TPQQLHHLHERLKFFDHIPTLAAAGGI-N 245 (277)
T ss_pred HHHHHHHHhCCCCCEEEECCCHHHHHHHHHcCcCEEEECCC----------CHHHHHHHHHHHhccCCCEEEEEECCC-C
Confidence 45788887654222444568999999999999999988752 233333433333 346889999999 5
Q ss_pred HHHHHHHHHcCCCEEEEccccccCcch
Q 020636 292 GTDVFKALALGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 292 ~~di~kal~lGAd~V~iG~~~~~~~~~ 318 (323)
.+.+.+...+|+|.+.+|.+....|..
T Consensus 246 ~~ni~~ya~~GvD~is~gal~~a~~~D 272 (277)
T TIGR01334 246 PENIADYIEAGIDLFITSAPYYAAPCD 272 (277)
T ss_pred HHHHHHHHhcCCCEEEeCcceecCccc
Confidence 788888889999999999987776654
No 231
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=97.46 E-value=0.015 Score=52.31 Aligned_cols=93 Identities=18% Similarity=0.164 Sum_probs=67.7
Q ss_pred HHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHh---cCCCeEEEecCCCCH
Q 020636 216 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRG 292 (323)
Q Consensus 216 ~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~~pvia~GGI~~~ 292 (323)
.++.+++. ++++-+-.+.+++.+..+.++||++|.. +-||--|.+......+.++.+.+ ..+..|++.+ +|+.
T Consensus 97 Ai~~L~~~-Gi~vn~T~ifs~~Qa~~Aa~aGa~yvsP--yvgRi~d~g~D~~~~i~~i~~~~~~~~~~tkILaAS-~r~~ 172 (222)
T PRK12656 97 AIKTLKAE-GYHITATAIYTVFQGLLAIEAGADYLAP--YYNRMENLNIDSNAVIGQLAEAIDRENSDSKILAAS-FKNV 172 (222)
T ss_pred HHHHHHHC-CCceEEeeeCCHHHHHHHHHCCCCEEec--ccchhhhcCCCHHHHHHHHHHHHHhcCCCCEEEEEe-cCCH
Confidence 45555543 7889888999999999999999988754 44553344444455666655544 3356666655 9999
Q ss_pred HHHHHHHHcCCCEEEEcccc
Q 020636 293 TDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 293 ~di~kal~lGAd~V~iG~~~ 312 (323)
.++.+++.+|||.+-+.-.+
T Consensus 173 ~~v~~a~~~G~d~vTvp~~v 192 (222)
T PRK12656 173 AQVNKAFALGAQAVTAGPDV 192 (222)
T ss_pred HHHHHHHHcCCCEEecCHHH
Confidence 99999999999999887533
No 232
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=97.46 E-value=0.0041 Score=57.40 Aligned_cols=85 Identities=18% Similarity=0.099 Sum_probs=63.9
Q ss_pred cCHHHHHHHHHhcCCCEEEecc-CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCC
Q 020636 212 LSWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~i-~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
-+.++|++|++.+++||+-+.- ....+++.+.++|+|.|.-+..- .|.-+.+..+++.. ++|++ .+++
T Consensus 52 ~~~~~I~~Ik~~V~iPVIGi~K~~~~~Ea~~L~eaGvDiIDaT~r~-------rP~~~~~~~iK~~~--~~l~M--AD~s 120 (283)
T cd04727 52 ADPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMIDESEVL-------TPADEEHHIDKHKF--KVPFV--CGAR 120 (283)
T ss_pred CCHHHHHHHHHhCCCCeEEeeehhHHHHHHHHHHcCCCEEeccCCC-------CcHHHHHHHHHHHc--CCcEE--ccCC
Confidence 3578999999999999987643 34899999999999999532211 12345666666554 45555 5799
Q ss_pred CHHHHHHHHHcCCCEEE
Q 020636 291 RGTDVFKALALGASGIF 307 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~ 307 (323)
|-++++.+..+|||.|.
T Consensus 121 tleEal~a~~~Gad~I~ 137 (283)
T cd04727 121 NLGEALRRISEGAAMIR 137 (283)
T ss_pred CHHHHHHHHHCCCCEEE
Confidence 99999999999999874
No 233
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=97.45 E-value=0.015 Score=53.30 Aligned_cols=75 Identities=27% Similarity=0.311 Sum_probs=57.6
Q ss_pred HHHHHH-HHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 237 EDARIA-VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 237 e~a~~~-~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
+.++.+ ...++|+|+|++.. .+.+++.+.|.++++.+ .+||++.+|+ |.+-+.+.|.. ||++.+||.|...
T Consensus 162 ~~~~~a~~~~~aDaviVtG~~----TG~~~~~~~l~~vr~~~--~~PVlvGSGv-t~~Ni~~~l~~-ADG~IVGS~~K~~ 233 (254)
T PF03437_consen 162 EAAKDAVERGGADAVIVTGKA----TGEPPDPEKLKRVREAV--PVPVLVGSGV-TPENIAEYLSY-ADGAIVGSYFKKD 233 (254)
T ss_pred HHHHHHHHhcCCCEEEECCcc----cCCCCCHHHHHHHHhcC--CCCEEEecCC-CHHHHHHHHHh-CCEEEEeeeeeeC
Confidence 445555 57899999998742 23467899999999988 4999998887 56777777754 9999999999765
Q ss_pred cchh
Q 020636 316 PLTE 319 (323)
Q Consensus 316 ~~~~ 319 (323)
-.|+
T Consensus 234 G~~~ 237 (254)
T PF03437_consen 234 GKWE 237 (254)
T ss_pred CEeC
Confidence 5543
No 234
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=97.45 E-value=0.0044 Score=57.25 Aligned_cols=85 Identities=19% Similarity=0.145 Sum_probs=64.3
Q ss_pred CHHHHHHHHHhcCCCEEEec-cCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 020636 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~ 291 (323)
+.++|++|++.+++||+-|. +....+|+.+.++|+|.|.-|..- .|.-+.+..++... ++|++ .|++|
T Consensus 55 ~p~~I~~I~~~V~iPVig~~kigh~~Ea~~L~~~GvDiIDeTe~l-------rPade~~~~~K~~f--~vpfm--ad~~~ 123 (287)
T TIGR00343 55 DPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDYIDESEVL-------TPADWTFHIDKKKF--KVPFV--CGARD 123 (287)
T ss_pred CHHHHHHHHHhCCCCEEEEeeccHHHHHHHHHHcCCCEEEccCCC-------CcHHHHHHHHHHHc--CCCEE--ccCCC
Confidence 57799999999999998884 355899999999999999643211 12344555555544 45554 57999
Q ss_pred HHHHHHHHHcCCCEEEE
Q 020636 292 GTDVFKALALGASGIFV 308 (323)
Q Consensus 292 ~~di~kal~lGAd~V~i 308 (323)
-++++.++..|||.|.-
T Consensus 124 l~EAlrai~~GadmI~T 140 (287)
T TIGR00343 124 LGEALRRINEGAAMIRT 140 (287)
T ss_pred HHHHHHHHHCCCCEEec
Confidence 99999999999998754
No 235
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=97.43 E-value=0.0012 Score=56.89 Aligned_cols=91 Identities=23% Similarity=0.252 Sum_probs=64.9
Q ss_pred HHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHH---HhcCCCeEEEecCCC
Q 020636 215 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVK---ATQGRIPVFLDGGVR 290 (323)
Q Consensus 215 ~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~---~~~~~~pvia~GGI~ 290 (323)
+.++.+++..+ .+.+.=.+.+.++++.+.++|+|.|.+.|. +.+.++++.+ ....++.|.++|||
T Consensus 68 ~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~g~d~I~lD~~----------~~~~~~~~v~~l~~~~~~v~ie~SGGI- 136 (169)
T PF01729_consen 68 EAVKAARQAAPEKKKIEVEVENLEEAEEALEAGADIIMLDNM----------SPEDLKEAVEELRELNPRVKIEASGGI- 136 (169)
T ss_dssp HHHHHHHHHSTTTSEEEEEESSHHHHHHHHHTT-SEEEEES-----------CHHHHHHHHHHHHHHTTTSEEEEESSS-
T ss_pred HHHHHHHHhCCCCceEEEEcCCHHHHHHHHHhCCCEEEecCc----------CHHHHHHHHHHHhhcCCcEEEEEECCC-
Confidence 34777887764 332444678899999999999999988762 2244444443 44557999999999
Q ss_pred CHHHHHHHHHcCCCEEEEccccccCc
Q 020636 291 RGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
+.+.+.+....|+|.+.+|+.....|
T Consensus 137 ~~~ni~~ya~~gvD~isvg~~~~~a~ 162 (169)
T PF01729_consen 137 TLENIAEYAKTGVDVISVGSLTHSAP 162 (169)
T ss_dssp STTTHHHHHHTT-SEEEECHHHHSBE
T ss_pred CHHHHHHHHhcCCCEEEcChhhcCCc
Confidence 56788888899999999998765544
No 236
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=97.43 E-value=0.022 Score=52.06 Aligned_cols=204 Identities=22% Similarity=0.265 Sum_probs=111.3
Q ss_pred ccceeecCcccccceEE-CcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEEeeecCChHHH
Q 020636 60 DMNTTVLGFKISMPIMI-APTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVV 138 (323)
Q Consensus 60 d~~t~i~g~~~~~Pi~i-aPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QLy~~~d~~~~ 138 (323)
++-+.+.+.....+.++ .|.+.- +.+--..+|+.++++|+.++-+.. .. =+. .+..|| .-..+-+
T Consensus 3 ~~~~~~~~~~~~~~~~iaGPC~vE---s~e~~~~~a~~~~~~g~~~~r~g~--~k----pRt--s~~sf~---G~G~~gl 68 (250)
T PRK13397 3 DIMSDFQNKTCSKNNFIVGPCSIE---SYDHIRLAASSAKKLGYNYFRGGA--YK----PRT--SAASFQ---GLGLQGI 68 (250)
T ss_pred cceEEecCccCCCCcEEeccCccC---CHHHHHHHHHHHHHcCCCEEEecc--cC----CCC--CCcccC---CCCHHHH
Confidence 34444445555545444 554432 233345899999999998887742 10 011 233444 2234455
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHH
Q 020636 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (323)
Q Consensus 139 ~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 218 (323)
..+.+..++.|...+- ++-.+ +.-+.-..+ +.+-. .+. .-..+.+.++
T Consensus 69 ~~L~~~~~~~Gl~~~T-ev~d~----~~v~~~~e~-----vdilq---Igs-------------------~~~~n~~LL~ 116 (250)
T PRK13397 69 RYLHEVCQEFGLLSVS-EIMSE----RQLEEAYDY-----LDVIQ---VGA-------------------RNMQNFEFLK 116 (250)
T ss_pred HHHHHHHHHcCCCEEE-eeCCH----HHHHHHHhc-----CCEEE---ECc-------------------ccccCHHHHH
Confidence 5666667778876443 22111 111111111 00000 000 0012355666
Q ss_pred HHHHhcCCCEEEe-c-cCCHHH----HHHHHHcCCCEEEEcCCCCCCCC---CCcchHHHHHHHHHHhcCCCeEEEe---
Q 020636 219 WLQTITKLPILVK-G-VLTAED----ARIAVQAGAAGIIVSNHGARQLD---YVPATIMALEEVVKATQGRIPVFLD--- 286 (323)
Q Consensus 219 ~i~~~~~~pv~vK-~-i~~~e~----a~~~~~~Gad~i~vs~~gg~~~~---~~~~~~~~l~~i~~~~~~~~pvia~--- 286 (323)
.+.+ ++.||++| | ..++++ ++.+.+.|..-|++.-+|-+... .-...+..++.+++.. .+|||++
T Consensus 117 ~va~-tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~--~lPVivd~SH 193 (250)
T PRK13397 117 TLSH-IDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKT--DLPIIVDVSH 193 (250)
T ss_pred HHHc-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHh--CCCeEECCCC
Confidence 6655 58999999 4 467777 45556788877776543422221 1134566777777766 6899997
Q ss_pred -cCCCC--HHHHHHHHHcCCCEEEEcccc
Q 020636 287 -GGVRR--GTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 287 -GGI~~--~~di~kal~lGAd~V~iG~~~ 312 (323)
+|.|. ..-...|+++|||+++|-+.+
T Consensus 194 s~G~r~~v~~~a~AAvA~GAdGl~IE~H~ 222 (250)
T PRK13397 194 STGRRDLLLPAAKIAKAVGANGIMMEVHP 222 (250)
T ss_pred CCcccchHHHHHHHHHHhCCCEEEEEecC
Confidence 44433 133567888999999998766
No 237
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=97.41 E-value=0.039 Score=53.27 Aligned_cols=210 Identities=21% Similarity=0.253 Sum_probs=114.9
Q ss_pred cCCCCCccceeecCccc--ccc-eEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEEee
Q 020636 54 IDVSKIDMNTTVLGFKI--SMP-IMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLY 130 (323)
Q Consensus 54 ~~~~~~d~~t~i~g~~~--~~P-i~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QLy 130 (323)
+....-++.+.+.+..+ ..| +++.|...- +.+.-..+|+.+++.|+.+.-...- + -+. .++.||
T Consensus 98 ~~~~~~~~~~~~~~~~~g~~~~~~iaGpc~iE---~~~~~~~~A~~lk~~g~~~~r~~~~-k-----pRt--sp~~f~-- 164 (360)
T PRK12595 98 RKKKPEDTIVDVKGEVIGDGNQSFIFGPCSVE---SYEQVEAVAKALKAKGLKLLRGGAF-K-----PRT--SPYDFQ-- 164 (360)
T ss_pred CccCCCCCEEEECCEEecCCCeeeEEeccccc---CHHHHHHHHHHHHHcCCcEEEcccc-C-----CCC--CCcccc--
Confidence 44444455555554443 234 455664331 2334468899999999888775310 0 011 233444
Q ss_pred ecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCC
Q 020636 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 210 (323)
Q Consensus 131 ~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (323)
.-..+....+-+.+++.|...+. ++-.+ +.-+.-..+ ++ +-.+.+ .-
T Consensus 165 -g~~~e~l~~L~~~~~~~Gl~~~t-~v~d~----~~~~~l~~~-vd----~lkI~s----------------------~~ 211 (360)
T PRK12595 165 -GLGVEGLKILKQVADEYGLAVIS-EIVNP----ADVEVALDY-VD----VIQIGA----------------------RN 211 (360)
T ss_pred -CCCHHHHHHHHHHHHHcCCCEEE-eeCCH----HHHHHHHHh-CC----eEEECc----------------------cc
Confidence 22345555666667788876543 32111 112221111 11 000000 00
Q ss_pred ccCHHHHHHHHHhcCCCEEEecc--CCHHHH----HHHHHcCCCEEEEcCCCCCCCC---CCcchHHHHHHHHHHhcCCC
Q 020636 211 SLSWKDVKWLQTITKLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLD---YVPATIMALEEVVKATQGRI 281 (323)
Q Consensus 211 ~~~~~~i~~i~~~~~~pv~vK~i--~~~e~a----~~~~~~Gad~i~vs~~gg~~~~---~~~~~~~~l~~i~~~~~~~~ 281 (323)
..+++.++.+.+ ++.||++|-- .+.++. ..+.+.|.+-|++.-+|-+... .....+..++.+++.. .+
T Consensus 212 ~~n~~LL~~~a~-~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~--~~ 288 (360)
T PRK12595 212 MQNFELLKAAGR-VNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQET--HL 288 (360)
T ss_pred ccCHHHHHHHHc-cCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHh--CC
Confidence 123566776655 5889999944 578774 4445688877777644533221 1123677888888766 68
Q ss_pred eEEEecCCCCH----H--HHHHHHHcCCCEEEEcccc
Q 020636 282 PVFLDGGVRRG----T--DVFKALALGASGIFVSIMP 312 (323)
Q Consensus 282 pvia~GGI~~~----~--di~kal~lGAd~V~iG~~~ 312 (323)
||+.|.+=..| . -...|+++|||+++|-+.|
T Consensus 289 PV~~d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~ 325 (360)
T PRK12595 289 PVMVDVTHSTGRRDLLLPTAKAALAIGADGVMAEVHP 325 (360)
T ss_pred CEEEeCCCCCcchhhHHHHHHHHHHcCCCeEEEEecC
Confidence 99996432222 2 3456788999999999887
No 238
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=97.40 E-value=0.00081 Score=60.40 Aligned_cols=70 Identities=19% Similarity=0.168 Sum_probs=54.7
Q ss_pred cCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcch
Q 020636 245 AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 245 ~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~ 318 (323)
.|...|.+-..||. +.+.+.+.+..+++.+. ++||+..||||+.+++.+++.+|||.|.+|+.+..+|.+
T Consensus 148 ~g~~~vYlE~gs~~---g~~v~~e~i~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~dp~~ 217 (223)
T TIGR01768 148 LGMPIIYLEAGSGA---PEPVPPELVAEVKKVLD-KARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEEDVDK 217 (223)
T ss_pred cCCcEEEEEecCCC---CCCcCHHHHHHHHHHcC-CCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhCHHH
Confidence 57777776433332 23445777888887763 699999999999999999999999999999999887643
No 239
>PRK01362 putative translaldolase; Provisional
Probab=97.40 E-value=0.019 Score=51.39 Aligned_cols=91 Identities=21% Similarity=0.167 Sum_probs=68.5
Q ss_pred HHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhc---CCCeEEEecCCCCH
Q 020636 216 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRG 292 (323)
Q Consensus 216 ~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~~pvia~GGI~~~ 292 (323)
.++.+++. ++++-+-.+.+.+.|..+.++|+++|.. +-||--|.+...+..+.++.+.+. .+..|++ ..+|+.
T Consensus 93 a~~~L~~~-Gi~v~~T~vfs~~Qa~~Aa~aGa~yisp--yvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkila-AS~r~~ 168 (214)
T PRK01362 93 AVKALSKE-GIKTNVTLIFSANQALLAAKAGATYVSP--FVGRLDDIGTDGMELIEDIREIYDNYGFDTEIIA-ASVRHP 168 (214)
T ss_pred HHHHHHHC-CCceEEeeecCHHHHHHHHhcCCcEEEe--ecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEEE-eecCCH
Confidence 45555443 7888888999999999999999998865 445544455566777777766552 2444554 569999
Q ss_pred HHHHHHHHcCCCEEEEcc
Q 020636 293 TDVFKALALGASGIFVSI 310 (323)
Q Consensus 293 ~di~kal~lGAd~V~iG~ 310 (323)
.++.++..+|||.+-++-
T Consensus 169 ~~v~~~~~~G~d~iTi~~ 186 (214)
T PRK01362 169 MHVLEAALAGADIATIPY 186 (214)
T ss_pred HHHHHHHHcCCCEEecCH
Confidence 999999999999998874
No 240
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=97.38 E-value=0.00049 Score=62.01 Aligned_cols=75 Identities=21% Similarity=0.207 Sum_probs=50.1
Q ss_pred HHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcchhhhc
Q 020636 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLTEKIN 322 (323)
Q Consensus 243 ~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~~~~~ 322 (323)
.-.|...|.+-...|+. ++.+ +.+.++++.+ .++|+|..|||||.+++.+++..|||.|++|+.|-..++.+++.
T Consensus 150 ~~~g~~~iYLEaGSGa~---~~v~-~~v~~~~~~~-~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~~~~e~~~ 224 (230)
T PF01884_consen 150 EYLGMPIIYLEAGSGAY---GPVP-EEVIAAVKKL-SDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEEDPDLEEAL 224 (230)
T ss_dssp HHTT-SEEEEE--TTSS---S-HH-HHHHHHHHHS-SSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHHHH-HHHHH
T ss_pred HHhCCCEEEEEeCCCCC---CCcc-HHHHHHHHhc-CCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEEcchHHHHH
Confidence 34788888875422221 1222 3444555554 38999999999999999999999999999999998877666543
No 241
>PRK08227 autoinducer 2 aldolase; Validated
Probab=97.37 E-value=0.0045 Score=57.10 Aligned_cols=92 Identities=21% Similarity=0.291 Sum_probs=64.2
Q ss_pred HHHHHHhcCCCEEEe---c--cCCHH-----HHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEe
Q 020636 217 VKWLQTITKLPILVK---G--VLTAE-----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 286 (323)
Q Consensus 217 i~~i~~~~~~pv~vK---~--i~~~e-----~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~ 286 (323)
+..-.+.|++|+++- + +.+.. -++.+.+.|||.|.+.- +. +.+.++.+.+ .+||+..
T Consensus 132 v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y----------~~-~~f~~vv~a~--~vPVvia 198 (264)
T PRK08227 132 LVDAGLRYGMPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKTYY----------VE-EGFERITAGC--PVPIVIA 198 (264)
T ss_pred HHHHHHHhCCcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEecCC----------CH-HHHHHHHHcC--CCcEEEe
Confidence 333445689998772 1 11222 27888999999998732 12 6677887766 7999999
Q ss_pred cCCCCH-HHHH----HHHHcCCCEEEEccccccCcchhhh
Q 020636 287 GGVRRG-TDVF----KALALGASGIFVSIMPCQCPLTEKI 321 (323)
Q Consensus 287 GGI~~~-~di~----kal~lGAd~V~iG~~~~~~~~~~~~ 321 (323)
||=+.. .|++ .++..||.+|.+||=...+++-.++
T Consensus 199 GG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~p~~~ 238 (264)
T PRK08227 199 GGKKLPERDALEMCYQAIDEGASGVDMGRNIFQSEHPVAM 238 (264)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCceeeechhhhccCCHHHH
Confidence 999853 3344 5677899999999988777665444
No 242
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=97.37 E-value=0.00064 Score=62.41 Aligned_cols=73 Identities=26% Similarity=0.207 Sum_probs=60.2
Q ss_pred CHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 235 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 235 ~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
..+.|+...+.|++.+-|---+| +.+...+.+.++.+ + .+||-+-||||+ +++.++|.+||+-|.|||.++.
T Consensus 45 P~~~A~~~~~~Ga~~lHvVDLdg----g~~~n~~~i~~i~~-~--~~~vqvGGGIR~-e~i~~~l~~Ga~rViigT~Av~ 116 (262)
T PLN02446 45 AAEFAEMYKRDGLTGGHVIMLGA----DDASLAAALEALRA-Y--PGGLQVGGGVNS-ENAMSYLDAGASHVIVTSYVFR 116 (262)
T ss_pred HHHHHHHHHHCCCCEEEEEECCC----CCcccHHHHHHHHh-C--CCCEEEeCCccH-HHHHHHHHcCCCEEEEchHHHh
Confidence 35678899999999987543222 23456888989888 6 699999999997 9999999999999999999988
Q ss_pred C
Q 020636 315 C 315 (323)
Q Consensus 315 ~ 315 (323)
+
T Consensus 117 ~ 117 (262)
T PLN02446 117 D 117 (262)
T ss_pred C
Confidence 7
No 243
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=97.36 E-value=0.0013 Score=58.34 Aligned_cols=66 Identities=21% Similarity=0.300 Sum_probs=52.9
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
+..+...|++.|.+-...|. ..+.+.+.+.++++.+ ++|++.-||||+.+++.+++..|||+|.+|
T Consensus 140 a~aa~~~G~~~i~Le~~sGa---~~~v~~e~i~~Vk~~~--~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 140 CLAAKYFGMKWVYLEAGSGA---SYPVNPETISLVKKAS--GIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred HHHHHHcCCCEEEEEcCCCC---CCCCCHHHHHHHHHhh--CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 45666889999887432222 2234578888888887 899999999999999999999999999987
No 244
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.35 E-value=0.0032 Score=56.27 Aligned_cols=87 Identities=18% Similarity=0.128 Sum_probs=65.9
Q ss_pred ccCCHHHHHHHHHcCCCEEEEcCCCCCC-CC--CCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEE
Q 020636 232 GVLTAEDARIAVQAGAAGIIVSNHGARQ-LD--YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFV 308 (323)
Q Consensus 232 ~i~~~e~a~~~~~~Gad~i~vs~~gg~~-~~--~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~i 308 (323)
-+.+.+++..+.+.|+|++.++--..+. .. ..+..++.+.++.+.. .++||++-|||. .+++.++++.||++|.+
T Consensus 108 S~H~~~e~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~-~~~PV~AiGGI~-~~ni~~l~~~Ga~GiAv 185 (211)
T PRK03512 108 STHDDMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERL-ADYPTVAIGGIS-LERAPAVLATGVGSIAV 185 (211)
T ss_pred eCCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-CCCCEEEECCCC-HHHHHHHHHcCCCEEEE
Confidence 3578899999999999999986533221 11 1233466677766542 169999999997 79999999999999999
Q ss_pred ccccccCcchhh
Q 020636 309 SIMPCQCPLTEK 320 (323)
Q Consensus 309 G~~~~~~~~~~~ 320 (323)
-+.++..++.++
T Consensus 186 isai~~~~d~~~ 197 (211)
T PRK03512 186 VSAITQAADWRA 197 (211)
T ss_pred hhHhhCCCCHHH
Confidence 999988776654
No 245
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=97.34 E-value=0.013 Score=54.88 Aligned_cols=79 Identities=24% Similarity=0.373 Sum_probs=62.8
Q ss_pred CCHHHHHHHHHcCCCEEEEc--C-CCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecC--CCCHHHHHHHHHcCCCEEEE
Q 020636 234 LTAEDARIAVQAGAAGIIVS--N-HGARQLDYVPATIMALEEVVKATQGRIPVFLDGG--VRRGTDVFKALALGASGIFV 308 (323)
Q Consensus 234 ~~~e~a~~~~~~Gad~i~vs--~-~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GG--I~~~~di~kal~lGAd~V~i 308 (323)
.++++|+.+.+.|+|++-++ + ||-..-....-.++.|.++.+.+. ++|+++=|| |. .+++.+++..|++.|-+
T Consensus 154 t~peea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~-~iPlVlhGGSGi~-~e~~~~~i~~Gi~KiNv 231 (293)
T PRK07315 154 APIEDAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVP-GFPIVLHGGSGIP-DDQIQEAIKLGVAKVNV 231 (293)
T ss_pred CCHHHHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhcc-CCCEEEECCCCCC-HHHHHHHHHcCCCEEEE
Confidence 57999999999999999998 3 553321122356889999998872 499999998 75 47799999999999999
Q ss_pred cccccc
Q 020636 309 SIMPCQ 314 (323)
Q Consensus 309 G~~~~~ 314 (323)
+|.+..
T Consensus 232 ~T~i~~ 237 (293)
T PRK07315 232 NTECQI 237 (293)
T ss_pred ccHHHH
Confidence 998764
No 246
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.34 E-value=0.0035 Score=58.44 Aligned_cols=88 Identities=17% Similarity=0.195 Sum_probs=67.9
Q ss_pred HHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 020636 215 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (323)
Q Consensus 215 ~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~ 293 (323)
+.++.+|+..+ ..-+.-.+.+.|+++.+.++|+|.|.+.|. +.+.+.++.+.+++++.+.++||| +.+
T Consensus 185 ~av~~~r~~~~~~~kIeVEv~tleea~~a~~agaDiImLDnm----------spe~l~~av~~~~~~~~leaSGGI-~~~ 253 (290)
T PRK06559 185 KAIAQARAYAPFVKMVEVEVESLAAAEEAAAAGADIIMLDNM----------SLEQIEQAITLIAGRSRIECSGNI-DMT 253 (290)
T ss_pred HHHHHHHHhCCCCCeEEEECCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhcCceEEEEECCC-CHH
Confidence 45788888764 222333568999999999999999988772 445566666666667899999999 567
Q ss_pred HHHHHHHcCCCEEEEccccc
Q 020636 294 DVFKALALGASGIFVSIMPC 313 (323)
Q Consensus 294 di~kal~lGAd~V~iG~~~~ 313 (323)
.+.+....|+|.+.+|....
T Consensus 254 ni~~yA~tGVD~Is~galth 273 (290)
T PRK06559 254 TISRFRGLAIDYVSSGSLTH 273 (290)
T ss_pred HHHHHHhcCCCEEEeCcccc
Confidence 78888889999999998765
No 247
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=97.33 E-value=0.016 Score=54.02 Aligned_cols=89 Identities=13% Similarity=0.081 Sum_probs=66.0
Q ss_pred HHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhc---CCCeEEEecCCCC
Q 020636 215 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRR 291 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~~pvia~GGI~~ 291 (323)
+.++.+|+..+...+.-.+.+.++++.+.++|+|.|.+.|. +.+.+.++.+.++ .++.+-++||| +
T Consensus 178 ~av~~~r~~~~~~kIeVEv~tleqa~ea~~agaDiI~LDn~----------~~e~l~~av~~~~~~~~~~~leaSGGI-~ 246 (284)
T PRK06096 178 GAINQLRRHAPEKKIVVEADTPKEAIAALRAQPDVLQLDKF----------SPQQATEIAQIAPSLAPHCTLSLAGGI-N 246 (284)
T ss_pred HHHHHHHHhCCCCCEEEECCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCeEEEEECCC-C
Confidence 45778887764333444678999999999999999988662 3344445444432 47889999999 5
Q ss_pred HHHHHHHHHcCCCEEEEcccccc
Q 020636 292 GTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 292 ~~di~kal~lGAd~V~iG~~~~~ 314 (323)
.+.+.+...+|+|.+.+|.....
T Consensus 247 ~~ni~~yA~tGvD~Is~gal~~a 269 (284)
T PRK06096 247 LNTLKNYADCGIRLFITSAPYYA 269 (284)
T ss_pred HHHHHHHHhcCCCEEEECccccC
Confidence 78888888899999999986444
No 248
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.32 E-value=0.0033 Score=58.49 Aligned_cols=88 Identities=19% Similarity=0.159 Sum_probs=68.5
Q ss_pred HHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 020636 215 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (323)
Q Consensus 215 ~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~ 293 (323)
+.++.+|+..+ .+-+.-.+.+.++++.+.++|+|.|.+.|. +.+.+.++.+.++++.++-++||| +.+
T Consensus 182 ~ai~~~r~~~~~~~kIeVEv~tleea~ea~~~gaDiI~LDn~----------s~e~l~~av~~~~~~~~leaSGGI-~~~ 250 (281)
T PRK06106 182 EAIRRARAGVGHLVKIEVEVDTLDQLEEALELGVDAVLLDNM----------TPDTLREAVAIVAGRAITEASGRI-TPE 250 (281)
T ss_pred HHHHHHHHhCCCCCcEEEEeCCHHHHHHHHHcCCCEEEeCCC----------CHHHHHHHHHHhCCCceEEEECCC-CHH
Confidence 45788888764 122333578999999999999999988772 446666766666667899999999 567
Q ss_pred HHHHHHHcCCCEEEEccccc
Q 020636 294 DVFKALALGASGIFVSIMPC 313 (323)
Q Consensus 294 di~kal~lGAd~V~iG~~~~ 313 (323)
.+.+....|+|.+.+|....
T Consensus 251 ni~~yA~tGVD~Is~Galth 270 (281)
T PRK06106 251 TAPAIAASGVDLISVGWLTH 270 (281)
T ss_pred HHHHHHhcCCCEEEeChhhc
Confidence 78888889999999998665
No 249
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=97.31 E-value=0.0019 Score=56.99 Aligned_cols=103 Identities=15% Similarity=0.165 Sum_probs=74.1
Q ss_pred CHHHHHHHHHhcCC-CEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 020636 213 SWKDVKWLQTITKL-PILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (323)
Q Consensus 213 ~~~~i~~i~~~~~~-pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~ 291 (323)
.++.+-.+.+..+. |++ .+.+.++.+++++.|+..|-|.|+.- ..-.-++.....+.+..+.++-+++..||.|
T Consensus 174 ~lk~l~k~~K~L~me~LV--EVn~~eEm~raleiGakvvGvNNRnL---~sFeVDlstTskL~E~i~kDvilva~SGi~t 248 (289)
T KOG4201|consen 174 LLKELYKISKDLGMEPLV--EVNDEEEMQRALEIGAKVVGVNNRNL---HSFEVDLSTTSKLLEGIPKDVILVALSGIFT 248 (289)
T ss_pred HHHHHHHHHHHcCCccee--eeccHHHHHHHHHhCcEEEeecCCcc---ceeeechhhHHHHHhhCccceEEEeccCCCC
Confidence 34444455555543 332 46889999999999999998877533 2222233334444555655788999999999
Q ss_pred HHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 292 GTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 292 ~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
++|+.+.-..|..+|.+|..++...+-++
T Consensus 249 pdDia~~q~~GV~avLVGEslmk~sDp~k 277 (289)
T KOG4201|consen 249 PDDIAKYQKAGVKAVLVGESLMKQSDPKK 277 (289)
T ss_pred HHHHHHHHHcCceEEEecHHHHhccCHHH
Confidence 99999999999999999999988766544
No 250
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=97.28 E-value=0.0021 Score=57.11 Aligned_cols=81 Identities=26% Similarity=0.305 Sum_probs=60.5
Q ss_pred CHHHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 020636 213 SWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (323)
Q Consensus 213 ~~~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~ 291 (323)
..+.|+++++.++ +.|-...+.+.++++.+.++|++.|+- -+ .+.+++..+.+ . ++|++- |+.|
T Consensus 46 a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fivs-P~---------~~~~v~~~~~~-~--~i~~iP--G~~T 110 (204)
T TIGR01182 46 ALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIVS-PG---------LTPELAKHAQD-H--GIPIIP--GVAT 110 (204)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEC-CC---------CCHHHHHHHHH-c--CCcEEC--CCCC
Confidence 4567899988874 445566789999999999999999943 21 12244433332 2 577776 9999
Q ss_pred HHHHHHHHHcCCCEEEE
Q 020636 292 GTDVFKALALGASGIFV 308 (323)
Q Consensus 292 ~~di~kal~lGAd~V~i 308 (323)
+.++.+|+++||+.|=+
T Consensus 111 ptEi~~A~~~Ga~~vKl 127 (204)
T TIGR01182 111 PSEIMLALELGITALKL 127 (204)
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 99999999999999865
No 251
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=97.28 E-value=0.002 Score=58.37 Aligned_cols=107 Identities=24% Similarity=0.397 Sum_probs=70.5
Q ss_pred CceeEEeeecCChH----HHHHHHHHHHHc---CCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccc
Q 020636 123 GIRFFQLYVYKDRN----VVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA 195 (323)
Q Consensus 123 ~~~~~QLy~~~d~~----~~~~~~~~a~~~---G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (323)
+..|+.|-+-.|+. ...+.+++++.. |+..+-++.|.|+..+|..++.-.+-+| .+.
T Consensus 90 ~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmP------------lg~---- 153 (248)
T cd04728 90 GTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVMP------------LGS---- 153 (248)
T ss_pred CCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCC------------CCc----
Confidence 34577775544432 234566666666 9988877888888776666653222111 010
Q ss_pred cchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 196 NDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
.+.+ ...-.+++.|+.+++..++||++- |+.+++|+..+.+.|+|+|.+.
T Consensus 154 -------pIGs-g~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~ 204 (248)
T cd04728 154 -------PIGS-GQGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLN 204 (248)
T ss_pred -------CCCC-CCCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 0000 012235788899999888999888 5899999999999999999884
No 252
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=97.28 E-value=0.011 Score=53.04 Aligned_cols=66 Identities=17% Similarity=0.273 Sum_probs=46.8
Q ss_pred HcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 244 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 244 ~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
-.|...+.+--.||. +.|...+.++.++. ..++|.-|||||++.+.++..+|||.+.+|+.+-.++
T Consensus 162 ~~g~~~~YlEagsga---~~Pv~~e~v~~v~~----~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~~ 227 (240)
T COG1646 162 YLGMPVVYLEAGSGA---GDPVPVEMVSRVLS----DTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEEDP 227 (240)
T ss_pred HhCCeEEEEEecCCC---CCCcCHHHHHHhhc----cceEEEcCCcCCHHHHHHHHHcCCCEEEECceeecCH
Confidence 356666655332221 23445555544432 4599999999999999999999999999999887665
No 253
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=97.27 E-value=0.011 Score=52.56 Aligned_cols=95 Identities=18% Similarity=0.115 Sum_probs=67.7
Q ss_pred HhcCCCEEEec--cCCHHHHHHHHH-cCCCEEEEcCCCCC--CCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHH
Q 020636 222 TITKLPILVKG--VLTAEDARIAVQ-AGAAGIIVSNHGAR--QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 296 (323)
Q Consensus 222 ~~~~~pv~vK~--i~~~e~a~~~~~-~Gad~i~vs~~gg~--~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~ 296 (323)
+.++.-+.+=. +.++++...-++ +|+|.+.+ |-|+ |..+..++++.|..+++.......|-+.||| +++++-
T Consensus 103 ~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~--H~g~D~q~~G~~~~~~~l~~ik~~~~~g~~vAVaGGI-~~~~i~ 179 (217)
T COG0269 103 KEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVIL--HRGRDAQAAGKSWGEDDLEKIKKLSDLGAKVAVAGGI-TPEDIP 179 (217)
T ss_pred HHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEE--EecccHhhcCCCccHHHHHHHHHhhccCceEEEecCC-CHHHHH
Confidence 33455555543 456677555554 99999999 4443 2334445577888888766323789999998 579999
Q ss_pred HHHHcCCCEEEEccccccCcchh
Q 020636 297 KALALGASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 297 kal~lGAd~V~iG~~~~~~~~~~ 319 (323)
.+...|++.|.+||.+-+..+-.
T Consensus 180 ~~~~~~~~ivIvGraIt~a~dp~ 202 (217)
T COG0269 180 LFKGIGADIVIVGRAITGAKDPA 202 (217)
T ss_pred HHhcCCCCEEEECchhcCCCCHH
Confidence 99999999999999998876643
No 254
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=97.26 E-value=0.0038 Score=58.35 Aligned_cols=90 Identities=23% Similarity=0.234 Sum_probs=68.2
Q ss_pred HHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 020636 215 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (323)
Q Consensus 215 ~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~ 293 (323)
+.++.+|+..+ .+ +.-.+.+.++++.+.++|+|.|.+.|. +.+.++++.+..+.++.+.++||| +.+
T Consensus 197 ~av~~~r~~~~~~k-IeVEv~sleea~ea~~~gaDiI~LDn~----------s~e~~~~av~~~~~~~~ieaSGGI-~~~ 264 (296)
T PRK09016 197 QAVEKAFWLHPDVP-VEVEVENLDELDQALKAGADIIMLDNF----------TTEQMREAVKRTNGRALLEVSGNV-TLE 264 (296)
T ss_pred HHHHHHHHhCCCCC-EEEEeCCHHHHHHHHHcCCCEEEeCCC----------ChHHHHHHHHhhcCCeEEEEECCC-CHH
Confidence 45777776654 34 444678999999999999999988762 335666666666567899999999 567
Q ss_pred HHHHHHHcCCCEEEEccccccCc
Q 020636 294 DVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 294 di~kal~lGAd~V~iG~~~~~~~ 316 (323)
.+.+...+|+|.+.+|......+
T Consensus 265 ni~~yA~tGVD~Is~galthsa~ 287 (296)
T PRK09016 265 TLREFAETGVDFISVGALTKHVQ 287 (296)
T ss_pred HHHHHHhcCCCEEEeCccccCCC
Confidence 78888889999999998665443
No 255
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=97.26 E-value=0.009 Score=52.98 Aligned_cols=162 Identities=19% Similarity=0.189 Sum_probs=105.0
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhh----c
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAG----Q 207 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 207 (323)
..+.+....+++.+-+.|+++|-||+.+|....--+.++..+ | ... .+ .|.+- +...+.+.... -
T Consensus 21 ~~~~e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~--p-~~l----IG--AGTVL--~~~q~~~a~~aGa~fi 89 (211)
T COG0800 21 GDDVEEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEF--P-EAL----IG--AGTVL--NPEQARQAIAAGAQFI 89 (211)
T ss_pred eCCHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhC--c-ccE----Ec--ccccc--CHHHHHHHHHcCCCEE
Confidence 467888888888888999999999999998766666666655 2 111 11 01000 00111111110 1
Q ss_pred cCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEec
Q 020636 208 IDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287 (323)
Q Consensus 208 ~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~G 287 (323)
..|.++-+.++...+ .++|+ +=|+.|+-++..+.++|++.+.+.-... -+++ ..++.+.- ...+++++..|
T Consensus 90 VsP~~~~ev~~~a~~-~~ip~-~PG~~TptEi~~Ale~G~~~lK~FPa~~---~Gg~---~~~ka~~g-P~~~v~~~pTG 160 (211)
T COG0800 90 VSPGLNPEVAKAANR-YGIPY-IPGVATPTEIMAALELGASALKFFPAEV---VGGP---AMLKALAG-PFPQVRFCPTG 160 (211)
T ss_pred ECCCCCHHHHHHHHh-CCCcc-cCCCCCHHHHHHHHHcChhheeecCccc---cCcH---HHHHHHcC-CCCCCeEeecC
Confidence 246677777776554 46665 4578999999999999999999853211 0112 22322221 12368999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 288 GVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 288 GI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
||..- .+...+++|+.+|++|+-|..
T Consensus 161 GVs~~-N~~~yla~gv~avG~Gs~l~~ 186 (211)
T COG0800 161 GVSLD-NAADYLAAGVVAVGLGSWLVP 186 (211)
T ss_pred CCCHH-HHHHHHhCCceEEecCccccC
Confidence 99764 899999999999999987753
No 256
>PRK08999 hypothetical protein; Provisional
Probab=97.23 E-value=0.0028 Score=59.70 Aligned_cols=78 Identities=21% Similarity=0.185 Sum_probs=61.9
Q ss_pred ccCCHHHHHHHHHcCCCEEEEcCCCCCC--CCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 232 GVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 232 ~i~~~e~a~~~~~~Gad~i~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
.+.+.+++..+.+.|+|+|.++--..+. .+..+..++.+.++++.. ++||+|-||| +.+++..++++||++|.+-
T Consensus 232 S~h~~~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~--~~Pv~AiGGI-~~~~~~~~~~~g~~gva~i 308 (312)
T PRK08999 232 SCHDAEELARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGV--PLPVYALGGL-GPGDLEEAREHGAQGIAGI 308 (312)
T ss_pred ecCCHHHHHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCC-CHHHHHHHHHhCCCEEEEE
Confidence 4578899999999999999986533221 122233467888887776 8999999999 9999999999999999988
Q ss_pred ccc
Q 020636 310 IMP 312 (323)
Q Consensus 310 ~~~ 312 (323)
+.|
T Consensus 309 ~~~ 311 (312)
T PRK08999 309 RGL 311 (312)
T ss_pred EEe
Confidence 765
No 257
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=97.23 E-value=0.002 Score=58.15 Aligned_cols=80 Identities=26% Similarity=0.352 Sum_probs=65.4
Q ss_pred HHHHHHHHHcCCCEEEEcC-CCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 236 AEDARIAVQAGAAGIIVSN-HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~-~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
.+.|+...+.||..+-+-- -|. ..+.+-..+.+.+|.+.+ ++||=.-|||||-+++.+.|.+|++.|.+||..+.
T Consensus 34 ~~~a~~~~~~Ga~~lHlVDLdgA--~~g~~~n~~~i~~i~~~~--~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~av~ 109 (241)
T COG0106 34 LEVAKKWSDQGAEWLHLVDLDGA--KAGGPRNLEAIKEILEAT--DVPVQVGGGIRSLEDVEALLDAGVARVIIGTAAVK 109 (241)
T ss_pred HHHHHHHHHcCCcEEEEeecccc--ccCCcccHHHHHHHHHhC--CCCEEeeCCcCCHHHHHHHHHCCCCEEEEecceec
Confidence 4668888889999886531 111 224456789999999988 89999999999999999999999999999999988
Q ss_pred Ccchh
Q 020636 315 CPLTE 319 (323)
Q Consensus 315 ~~~~~ 319 (323)
+|.+-
T Consensus 110 ~p~~v 114 (241)
T COG0106 110 NPDLV 114 (241)
T ss_pred CHHHH
Confidence 88653
No 258
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.19 E-value=0.0057 Score=57.12 Aligned_cols=90 Identities=21% Similarity=0.269 Sum_probs=67.2
Q ss_pred HHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHH
Q 020636 216 DVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 294 (323)
Q Consensus 216 ~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~d 294 (323)
.++.+|+... .+ +.-.+.+.++++.+.++|+|.|.+.|. +.+.+.++.+.+++++.+-++||| |.+.
T Consensus 195 av~~~r~~~~~~k-IeVEvetleea~eA~~aGaDiImLDnm----------spe~l~~av~~~~~~~~lEaSGGI-t~~n 262 (294)
T PRK06978 195 ALDAAFALNAGVP-VQIEVETLAQLETALAHGAQSVLLDNF----------TLDMMREAVRVTAGRAVLEVSGGV-NFDT 262 (294)
T ss_pred HHHHHHHhCCCCc-EEEEcCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHhhcCCeEEEEECCC-CHHH
Confidence 4666666543 23 333568999999999999999998773 345556666655557889999999 5677
Q ss_pred HHHHHHcCCCEEEEccccccCcc
Q 020636 295 VFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 295 i~kal~lGAd~V~iG~~~~~~~~ 317 (323)
+.+....|+|.+.+|......|+
T Consensus 263 i~~yA~tGVD~IS~galthsa~~ 285 (294)
T PRK06978 263 VRAFAETGVDRISIGALTKDVRA 285 (294)
T ss_pred HHHHHhcCCCEEEeCccccCCcc
Confidence 88888899999999987655543
No 259
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.18 E-value=0.006 Score=56.73 Aligned_cols=91 Identities=19% Similarity=0.173 Sum_probs=68.8
Q ss_pred HHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 020636 215 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (323)
Q Consensus 215 ~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~ 293 (323)
+.++.+|+..+ ..-|.-.+.+.++++.+.++|+|.|.+.|. +.+.+.++.+.++++..+.++||| +.+
T Consensus 181 ~av~~~r~~~~~~~kIeVEv~slee~~ea~~~gaDiImLDn~----------s~e~l~~av~~~~~~~~leaSGgI-~~~ 249 (281)
T PRK06543 181 EALRHVRAQLGHTTHVEVEVDRLDQIEPVLAAGVDTIMLDNF----------SLDDLREGVELVDGRAIVEASGNV-NLN 249 (281)
T ss_pred HHHHHHHHhCCCCCcEEEEeCCHHHHHHHHhcCCCEEEECCC----------CHHHHHHHHHHhCCCeEEEEECCC-CHH
Confidence 45777777764 122333678999999999999999988772 345566666666667789999999 567
Q ss_pred HHHHHHHcCCCEEEEccccccCc
Q 020636 294 DVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 294 di~kal~lGAd~V~iG~~~~~~~ 316 (323)
.+.+....|+|.+.+|......+
T Consensus 250 ni~~yA~tGVD~Is~galths~~ 272 (281)
T PRK06543 250 TVGAIASTGVDVISVGALTHSVR 272 (281)
T ss_pred HHHHHHhcCCCEEEeCccccCCc
Confidence 88888889999999998665443
No 260
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=97.16 E-value=0.02 Score=50.43 Aligned_cols=96 Identities=16% Similarity=0.127 Sum_probs=67.8
Q ss_pred CHHHHHHHHHhcCCCEE--Eec---------cCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchH-HHHHHHHHHhcCC
Q 020636 213 SWKDVKWLQTITKLPIL--VKG---------VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKATQGR 280 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~--vK~---------i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~-~~l~~i~~~~~~~ 280 (323)
..++|+.+++.+++|++ +|- ..+.+|+..+.++|++.|.+...-....++ ++ +++.+ .+ .
T Consensus 54 gv~dIkai~~~v~vPIIGIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT~R~RP~~---~~~~~i~~----~k-~ 125 (229)
T COG3010 54 GVEDIKAIRAVVDVPIIGIIKRDYPDSPVRITPTLKEVDALAEAGADIIAFDATDRPRPDG---DLEELIAR----IK-Y 125 (229)
T ss_pred chhhHHHHHhhCCCCeEEEEecCCCCCCceecccHHHHHHHHHCCCcEEEeecccCCCCcc---hHHHHHHH----hh-c
Confidence 35688889999999984 551 257899999999999999886544332222 33 33333 11 2
Q ss_pred CeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcch
Q 020636 281 IPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 281 ~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~ 318 (323)
-..++.-.++|.+|.+-|..+|+|.| |+-|.|.-.+
T Consensus 126 ~~~l~MAD~St~ee~l~a~~~G~D~I--GTTLsGYT~~ 161 (229)
T COG3010 126 PGQLAMADCSTFEEGLNAHKLGFDII--GTTLSGYTGY 161 (229)
T ss_pred CCcEEEeccCCHHHHHHHHHcCCcEE--ecccccccCC
Confidence 34566677999999999999999987 7777665443
No 261
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.14 E-value=0.0015 Score=66.17 Aligned_cols=79 Identities=16% Similarity=0.066 Sum_probs=63.1
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCC--CCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH-----------HHHHHHHHcC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGAR--QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-----------TDVFKALALG 302 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~--~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~-----------~di~kal~lG 302 (323)
.+.|+...+.|||.|.+-.-.+. ......+.++++.++.+.+ .+|+-+-||||+- +++.+.|.+|
T Consensus 270 ve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~--~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~G 347 (538)
T PLN02617 270 VELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENV--FVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSG 347 (538)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhC--CCCEEEcCCccccccccccccchHHHHHHHHHcC
Confidence 35588889999999987553331 1122345688999999888 8999999999998 5589999999
Q ss_pred CCEEEEccccccCc
Q 020636 303 ASGIFVSIMPCQCP 316 (323)
Q Consensus 303 Ad~V~iG~~~~~~~ 316 (323)
||-|.||+..+.+|
T Consensus 348 adkV~i~s~Av~~~ 361 (538)
T PLN02617 348 ADKISIGSDAVYAA 361 (538)
T ss_pred CCEEEEChHHHhCh
Confidence 99999999888875
No 262
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=97.14 E-value=0.004 Score=62.75 Aligned_cols=98 Identities=19% Similarity=0.207 Sum_probs=70.6
Q ss_pred HHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcCCCCCC--CCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHH
Q 020636 218 KWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 294 (323)
Q Consensus 218 ~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~d 294 (323)
...|+..+-..++. .+.+.+++..+.+.|+|+|.++--..+. .+..+..++.+.++.+.. ++||++-|||. .++
T Consensus 381 ~~~r~~~~~~~~iG~S~h~~~e~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~--~~Pv~aiGGI~-~~~ 457 (502)
T PLN02898 381 RLARSLLGPGKIIGVSCKTPEQAEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLREVCEAS--KLPVVAIGGIS-ASN 457 (502)
T ss_pred HHHHHhcCCCCEEEEeCCCHHHHHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcC--CCCEEEECCCC-HHH
Confidence 44555543223343 4578999999999999999875322211 122233577788877665 79999999995 899
Q ss_pred HHHHHHcCCC---EEEEccccccCcch
Q 020636 295 VFKALALGAS---GIFVSIMPCQCPLT 318 (323)
Q Consensus 295 i~kal~lGAd---~V~iG~~~~~~~~~ 318 (323)
+.+++++||+ +|.+++.++..++-
T Consensus 458 ~~~~~~~G~~~~~gvav~~~i~~~~d~ 484 (502)
T PLN02898 458 AASVMESGAPNLKGVAVVSALFDQEDV 484 (502)
T ss_pred HHHHHHcCCCcCceEEEEeHHhcCCCH
Confidence 9999999999 99999999765543
No 263
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=97.13 E-value=0.054 Score=48.68 Aligned_cols=166 Identities=14% Similarity=0.149 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHcCCceeecCCCC------C----CHHHHHhcCC--CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEe
Q 020636 89 GEYATARAASAAGTIMTLSSWST------S----SVEEVASTGP--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (323)
Q Consensus 89 ~e~~~a~aa~~~G~~~~vs~~s~------~----~~eei~~~~~--~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~it 156 (323)
+++.-.+.+.+.|..-.++|.-+ . .+.++++..+ ++..+|+. ..|.+.+.+..++..+.+ ..++|-
T Consensus 8 A~~~~i~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~i~~~~~~~~~v~~Qv~-~~d~e~mi~ea~~l~~~~-~ni~IK 85 (220)
T PRK12653 8 SDVVAVKALSRIFPLAGVTTNPSIIAAGKKPLEVVLPQLHEAMGGQGRLFAQVM-ATTAEGMVNDARKLRSII-ADIVVK 85 (220)
T ss_pred CCHHHHHHHHhCCCccEEeCCHHHHHhcCCCHHHHHHHHHHHhCCCCcEEEEEe-cCCHHHHHHHHHHHHHhC-CCEEEE
Confidence 35566677777777777776421 1 2344555443 46777886 456655544444444443 224433
Q ss_pred cCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCH
Q 020636 157 VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA 236 (323)
Q Consensus 157 vd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~ 236 (323)
+ |.. .. -.+.++.+++. ++++.+-.+.+.
T Consensus 86 I--P~T----------------------------------~~--------------Gl~A~~~L~~~-GI~vn~T~vfs~ 114 (220)
T PRK12653 86 V--PVT----------------------------------AE--------------GLAAIKMLKAE-GIPTLGTAVYGA 114 (220)
T ss_pred e--CCC----------------------------------HH--------------HHHHHHHHHHc-CCCeeEEEecCH
Confidence 2 210 00 02344555443 788888899999
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHh---cCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 237 e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
+.|..+..+||++|.. +-||--+.+...+..+.++.+.+ ..+..|++ ..+|+..++.+++.+|||.+-+.-
T Consensus 115 ~Qa~~Aa~aGa~yIsp--yvgR~~~~g~dg~~~i~~i~~~~~~~~~~tkILa-AS~r~~~~v~~~~~~G~d~vTip~ 188 (220)
T PRK12653 115 AQGLLSALAGAEYVAP--YVNRIDAQGGSGIQTVTDLQQLLKMHAPQAKVLA-ASFKTPRQALDCLLAGCESITLPL 188 (220)
T ss_pred HHHHHHHhcCCcEEEe--ecChHhhcCCChHHHHHHHHHHHHhcCCCcEEEE-EecCCHHHHHHHHHcCCCEEECCH
Confidence 9999999999998865 33443333444555666655544 22455555 559999999999999999998874
No 264
>PRK00208 thiG thiazole synthase; Reviewed
Probab=97.10 E-value=0.004 Score=56.45 Aligned_cols=107 Identities=23% Similarity=0.371 Sum_probs=70.8
Q ss_pred CceeEEeeecCChH----HHHHHHHHHHHc---CCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccc
Q 020636 123 GIRFFQLYVYKDRN----VVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA 195 (323)
Q Consensus 123 ~~~~~QLy~~~d~~----~~~~~~~~a~~~---G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (323)
+..|+.|-+-.|+. ...+.+++++.. |+..+-++.|.|+..+|..++.-.+-+| .+.. -+
T Consensus 90 ~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmP------------lg~p-IG 156 (250)
T PRK00208 90 GTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMP------------LGAP-IG 156 (250)
T ss_pred CCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCC------------CCcC-CC
Confidence 34688875544332 234566777766 9988877888888777766663222111 0100 00
Q ss_pred cchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 196 NDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
.+ .+-.+++.++.+++..++||++- |+.+++|+..+++.|+|+|.+.
T Consensus 157 sg-----------~gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~ 204 (250)
T PRK00208 157 SG-----------LGLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLN 204 (250)
T ss_pred CC-----------CCCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 01 12224677899988888999888 6799999999999999999884
No 265
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.09 E-value=0.0072 Score=56.45 Aligned_cols=88 Identities=15% Similarity=0.169 Sum_probs=65.0
Q ss_pred HHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHH---hcCCCeEEEecCCC
Q 020636 215 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA---TQGRIPVFLDGGVR 290 (323)
Q Consensus 215 ~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~---~~~~~pvia~GGI~ 290 (323)
+.++++|+..+ .| +.-.+.+.+++..+.++|+|.|.+.|. +.+.++++.+. ...++.+.++|||
T Consensus 188 ~ai~~~r~~~~~~k-IeVEv~tl~ea~eal~~gaDiI~LDnm----------~~e~vk~av~~~~~~~~~v~ieaSGGI- 255 (289)
T PRK07896 188 AALRAVRAAAPDLP-CEVEVDSLEQLDEVLAEGAELVLLDNF----------PVWQTQEAVQRRDARAPTVLLESSGGL- 255 (289)
T ss_pred HHHHHHHHhCCCCC-EEEEcCCHHHHHHHHHcCCCEEEeCCC----------CHHHHHHHHHHHhccCCCEEEEEECCC-
Confidence 45777777654 34 344578999999999999999988762 23334444333 2447889999999
Q ss_pred CHHHHHHHHHcCCCEEEEcccccc
Q 020636 291 RGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
+.+.+.+...+|+|.+.+|.....
T Consensus 256 ~~~ni~~yA~tGvD~Is~galt~s 279 (289)
T PRK07896 256 TLDTAAAYAETGVDYLAVGALTHS 279 (289)
T ss_pred CHHHHHHHHhcCCCEEEeChhhcC
Confidence 567888888899999999987763
No 266
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=97.07 E-value=0.063 Score=48.25 Aligned_cols=91 Identities=19% Similarity=0.168 Sum_probs=65.7
Q ss_pred HHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHh---cCCCeEEEecCCCCH
Q 020636 216 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRG 292 (323)
Q Consensus 216 ~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~~pvia~GGI~~~ 292 (323)
.++.+++. ++++-+-.+.+.+.|..+..+|+++|.. +-||--+.+...+..+.++.+.+ +.+..|++ ..+|+.
T Consensus 95 Ai~~L~~~-GI~vn~T~vfs~~Qa~~Aa~aGa~yIsp--yvgR~~~~g~dg~~~i~~~~~~~~~~~~~tkILa-AS~r~~ 170 (220)
T PRK12655 95 AIKKLKKE-GIPTLGTAVYSAAQGLLAALAGAKYVAP--YVNRVDAQGGDGIRMVQELQTLLEMHAPESMVLA-ASFKTP 170 (220)
T ss_pred HHHHHHHC-CCceeEeEecCHHHHHHHHHcCCeEEEe--ecchHhHcCCCHHHHHHHHHHHHHhcCCCcEEEE-EecCCH
Confidence 45555443 7888888899999999999999997765 33443333444566666665544 22455555 559999
Q ss_pred HHHHHHHHcCCCEEEEcc
Q 020636 293 TDVFKALALGASGIFVSI 310 (323)
Q Consensus 293 ~di~kal~lGAd~V~iG~ 310 (323)
.++.+++.+|||.+-+.-
T Consensus 171 ~~v~~~~~~G~d~vTip~ 188 (220)
T PRK12655 171 RQALDCLLAGCQSITLPL 188 (220)
T ss_pred HHHHHHHHcCCCEEECCH
Confidence 999999999999998874
No 267
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=97.06 E-value=0.049 Score=49.24 Aligned_cols=107 Identities=21% Similarity=0.152 Sum_probs=65.7
Q ss_pred cCHHHHHHHHHhcCCCEEEec-cCCHHH-HHHHHHcCCCEEEEcCC----------------CC---------CC-----
Q 020636 212 LSWKDVKWLQTITKLPILVKG-VLTAED-ARIAVQAGAAGIIVSNH----------------GA---------RQ----- 259 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~-i~~~e~-a~~~~~~Gad~i~vs~~----------------gg---------~~----- 259 (323)
+..+.++++|+.++.|+-+.. +.+++. +....++|+|.|.++-- |- +.
T Consensus 46 fg~~~i~~ir~~t~~~~DvHLMv~~P~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~ 125 (229)
T PRK09722 46 LSPFFVSQVKKLASKPLDVHLMVTDPQDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESIK 125 (229)
T ss_pred cCHHHHHHHHhcCCCCeEEEEEecCHHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHHH
Confidence 345577778777777776663 344544 56677788888777321 00 00
Q ss_pred -----CC-----------CC----cchHHHHHHHHHHhc---CCCeEEEecCCCCHHHHHHHHHcCCCEEEEccc-ccc-
Q 020636 260 -----LD-----------YV----PATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFVSIM-PCQ- 314 (323)
Q Consensus 260 -----~~-----------~~----~~~~~~l~~i~~~~~---~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~-~~~- 314 (323)
.| ++ +..++-+.++++... -++.|-+||||. .+-+.++.++|||.+.+|+. +++
T Consensus 126 ~~l~~vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~~aGad~~V~Gss~iF~~ 204 (229)
T PRK09722 126 YYIHLLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLMEAGADVFIVGTSGLFNL 204 (229)
T ss_pred HHHHhcCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcCCCEEEEChHHHcCC
Confidence 01 11 233444555544332 146799999998 56777888999999999964 665
Q ss_pred Ccchh
Q 020636 315 CPLTE 319 (323)
Q Consensus 315 ~~~~~ 319 (323)
.++.+
T Consensus 205 ~~d~~ 209 (229)
T PRK09722 205 DEDID 209 (229)
T ss_pred CCCHH
Confidence 34443
No 268
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=97.02 E-value=0.011 Score=56.02 Aligned_cols=90 Identities=19% Similarity=0.395 Sum_probs=71.5
Q ss_pred CCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhH
Q 020636 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 201 (323)
Q Consensus 122 ~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (323)
+.+....+..+.|.+.+.++++.++++|++.+.|+ | |.++.+..
T Consensus 141 ~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVH------G-Rtr~~kg~----------------------------- 184 (358)
T KOG2335|consen 141 NVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVH------G-RTREQKGL----------------------------- 184 (358)
T ss_pred CCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEe------c-ccHHhcCC-----------------------------
Confidence 45677778778899999999999999999988765 3 33443321
Q ss_pred HHHhhccCCccCHHHHHHHHHhcC-CCEEEec-cCCHHHHHHHHH-cCCCEEEEc
Q 020636 202 AYVAGQIDRSLSWKDVKWLQTITK-LPILVKG-VLTAEDARIAVQ-AGAAGIIVS 253 (323)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~i~~~~~-~pv~vK~-i~~~e~a~~~~~-~Gad~i~vs 253 (323)
..+..+|+.|+.+++..+ +|+++-| |.+.+|+.++.+ .|+|+|.+.
T Consensus 185 ------~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~a 233 (358)
T KOG2335|consen 185 ------KTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSA 233 (358)
T ss_pred ------CCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEec
Confidence 124468999999999997 9999885 799999999998 999999763
No 269
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=97.02 E-value=0.0066 Score=59.50 Aligned_cols=87 Identities=14% Similarity=0.058 Sum_probs=65.8
Q ss_pred cCCHHHHHHHHHcCCCEEEEcCCCCCC---CCCCcchHHHHHHHHHHhc-------CCCeEEEecCCCCHHHHHHHHHcC
Q 020636 233 VLTAEDARIAVQAGAAGIIVSNHGARQ---LDYVPATIMALEEVVKATQ-------GRIPVFLDGGVRRGTDVFKALALG 302 (323)
Q Consensus 233 i~~~e~a~~~~~~Gad~i~vs~~gg~~---~~~~~~~~~~l~~i~~~~~-------~~~pvia~GGI~~~~di~kal~lG 302 (323)
+.+.+++.++.+.|+|+|.++---.+. ....+-.++.|.++.+.+. ..+||++-||| +.+++.++++.|
T Consensus 307 tHs~eEl~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~Ni~~vl~aG 385 (437)
T PRK12290 307 THGYYELLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-DQSNAEQVWQCG 385 (437)
T ss_pred cCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-CHHHHHHHHHcC
Confidence 467899999999999999885422221 1223345677776665542 26999999999 889999999999
Q ss_pred CCEEEEccccccCcchhh
Q 020636 303 ASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 303 Ad~V~iG~~~~~~~~~~~ 320 (323)
|++|.+=|+++..++.++
T Consensus 386 a~GVAVVSAI~~A~DP~a 403 (437)
T PRK12290 386 VSSLAVVRAITLAEDPQL 403 (437)
T ss_pred CCEEEEehHhhcCCCHHH
Confidence 999999999987766543
No 270
>PRK06852 aldolase; Validated
Probab=96.97 E-value=0.018 Score=54.16 Aligned_cols=93 Identities=25% Similarity=0.228 Sum_probs=62.1
Q ss_pred HHhcCCCEEEe----c--c---CCH----HHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEec
Q 020636 221 QTITKLPILVK----G--V---LTA----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287 (323)
Q Consensus 221 ~~~~~~pv~vK----~--i---~~~----e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~G 287 (323)
.+.|++|+++- | + ..+ .-++.+.+.|||.|.+--.+- . .....+.+.++.+.+ +++||+.+|
T Consensus 163 a~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~~-~---~~g~~e~f~~vv~~~-g~vpVviaG 237 (304)
T PRK06852 163 AHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPKK-E---GANPAELFKEAVLAA-GRTKVVCAG 237 (304)
T ss_pred HHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCCc-C---CCCCHHHHHHHHHhC-CCCcEEEeC
Confidence 45578998862 2 1 111 226888999999999843210 0 012346677777765 369999999
Q ss_pred CCCCH-HHHH----HHHH-cCCCEEEEccccccCcch
Q 020636 288 GVRRG-TDVF----KALA-LGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 288 GI~~~-~di~----kal~-lGAd~V~iG~~~~~~~~~ 318 (323)
|=+.. .|++ .++. .||.+|.+||=.+.+|+-
T Consensus 238 G~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~~p 274 (304)
T PRK06852 238 GSSTDPEEFLKQLYEQIHISGASGNATGRNIHQKPLD 274 (304)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCceeeechhhhcCCCc
Confidence 99853 3444 4566 899999999988777654
No 271
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=96.95 E-value=0.011 Score=52.43 Aligned_cols=103 Identities=21% Similarity=0.233 Sum_probs=62.0
Q ss_pred cCHHHHHHHHHhcCCCEEEec-cCCHHH-HHHHHHcCCCEEEEcC---------------CCC---------CC------
Q 020636 212 LSWKDVKWLQTITKLPILVKG-VLTAED-ARIAVQAGAAGIIVSN---------------HGA---------RQ------ 259 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~-i~~~e~-a~~~~~~Gad~i~vs~---------------~gg---------~~------ 259 (323)
+..+.++++++.++.|+=+.. +.+++. .+.+.++|+|.|.++- +|. +.
T Consensus 44 ~g~~~i~~i~~~~~~~~DvHLMv~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~ 123 (201)
T PF00834_consen 44 FGPDIIKAIRKITDLPLDVHLMVENPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEP 123 (201)
T ss_dssp B-HHHHHHHHTTSSSEEEEEEESSSGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTT
T ss_pred CCHHHHHHHhhcCCCcEEEEeeeccHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHH
Confidence 345677778777777777764 334433 5666777888777631 010 10
Q ss_pred ----CC-----------CC----cchHHHHHHHHHHh---cCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 260 ----LD-----------YV----PATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 260 ----~~-----------~~----~~~~~~l~~i~~~~---~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.| ++ +..++-++++++.. +.++.|.+||||+.. .+.++.++|||.+.+||.+++.
T Consensus 124 ~l~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~~-~~~~~~~aGad~~V~Gs~iF~~ 200 (201)
T PF00834_consen 124 YLDQVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLIPENGLDFEIEVDGGINEE-NIKQLVEAGADIFVAGSAIFKA 200 (201)
T ss_dssp TGCCSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEEESSESTT-THHHHHHHT--EEEESHHHHTS
T ss_pred HhhhcCEEEEEEecCCCCcccccHHHHHHHHHHHHHHHhcCCceEEEEECCCCHH-HHHHHHHcCCCEEEECHHHhCC
Confidence 01 12 23444455554433 236899999999875 6777888999999999987654
No 272
>PLN02591 tryptophan synthase
Probab=96.93 E-value=0.013 Score=53.73 Aligned_cols=41 Identities=29% Similarity=0.400 Sum_probs=36.2
Q ss_pred HHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcC
Q 020636 214 WKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSN 254 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~ 254 (323)
.+.++.+|+.++.|+++. |+.+.++++.+.+.|||+++|..
T Consensus 178 ~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 178 ESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred HHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 345889999889999998 78999999999999999999943
No 273
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=96.92 E-value=0.033 Score=50.33 Aligned_cols=101 Identities=8% Similarity=-0.037 Sum_probs=62.2
Q ss_pred HHHHHHHhcCCC----EEEeccCCHHHHHHHHHcCCCEEEE-c---CCCCCCCCCCcchHHHHHHHHHHhc---CCCeEE
Q 020636 216 DVKWLQTITKLP----ILVKGVLTAEDARIAVQAGAAGIIV-S---NHGARQLDYVPATIMALEEVVKATQ---GRIPVF 284 (323)
Q Consensus 216 ~i~~i~~~~~~p----v~vK~i~~~e~a~~~~~~Gad~i~v-s---~~gg~~~~~~~~~~~~l~~i~~~~~---~~~pvi 284 (323)
.+++||+. +.+ +.++--...+..+..++ -+|.|.+ + +.||.. .-+..++-+.++++... -++.|-
T Consensus 108 ~l~~Ik~~-g~~~kaGlalnP~Tp~~~i~~~l~-~vD~VLiMtV~PGfgGQ~--f~~~~l~KI~~lr~~~~~~~~~~~Ie 183 (228)
T PRK08091 108 TIEWLAKQ-KTTVLIGLCLCPETPISLLEPYLD-QIDLIQILTLDPRTGTKA--PSDLILDRVIQVENRLGNRRVEKLIS 183 (228)
T ss_pred HHHHHHHC-CCCceEEEEECCCCCHHHHHHHHh-hcCEEEEEEECCCCCCcc--ccHHHHHHHHHHHHHHHhcCCCceEE
Confidence 56667664 321 22222245566666555 3777765 2 222311 22344555555554432 146799
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEccccccCcchhhh
Q 020636 285 LDGGVRRGTDVFKALALGASGIFVSIMPCQCPLTEKI 321 (323)
Q Consensus 285 a~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~~~~ 321 (323)
+||||. .+-+.++.++|||.+.+|+.+++.+++++.
T Consensus 184 VDGGI~-~~ti~~l~~aGaD~~V~GSalF~~~d~~~~ 219 (228)
T PRK08091 184 IDGSMT-LELASYLKQHQIDWVVSGSALFSQGELKTT 219 (228)
T ss_pred EECCCC-HHHHHHHHHCCCCEEEEChhhhCCCCHHHH
Confidence 999998 567778889999999999999887776543
No 274
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=96.92 E-value=0.0092 Score=52.27 Aligned_cols=82 Identities=27% Similarity=0.308 Sum_probs=60.4
Q ss_pred CHHHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 020636 213 SWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (323)
Q Consensus 213 ~~~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~ 291 (323)
..+.++.+++.++ ..+....+.+.+.+..+.++|+|+|...+ ...+.+ +..+.. .++++. |+.|
T Consensus 42 ~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~----------~~~~~~-~~~~~~--~~~~i~--gv~t 106 (190)
T cd00452 42 ALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPG----------LDPEVV-KAANRA--GIPLLP--GVAT 106 (190)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCC----------CCHHHH-HHHHHc--CCcEEC--CcCC
Confidence 3457888988875 55555567889999999999999995421 122333 333333 567776 8899
Q ss_pred HHHHHHHHHcCCCEEEEc
Q 020636 292 GTDVFKALALGASGIFVS 309 (323)
Q Consensus 292 ~~di~kal~lGAd~V~iG 309 (323)
.+++.+|+.+|||.+.+-
T Consensus 107 ~~e~~~A~~~Gad~i~~~ 124 (190)
T cd00452 107 PTEIMQALELGADIVKLF 124 (190)
T ss_pred HHHHHHHHHCCCCEEEEc
Confidence 999999999999999983
No 275
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=96.91 E-value=0.014 Score=55.53 Aligned_cols=83 Identities=23% Similarity=0.240 Sum_probs=56.6
Q ss_pred HHHHHHcCCCEEEEcCCCC----------CCC------CCCcchHHHHHHHHHHh-cCCCeEEEecCCCCH-HH----HH
Q 020636 239 ARIAVQAGAAGIIVSNHGA----------RQL------DYVPATIMALEEVVKAT-QGRIPVFLDGGVRRG-TD----VF 296 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg----------~~~------~~~~~~~~~l~~i~~~~-~~~~pvia~GGI~~~-~d----i~ 296 (323)
++.+.+.|||.|.+--.+. ... .......+.++.+.+.+ .+++||+.+||=+.. .| +.
T Consensus 223 aRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~ 302 (348)
T PRK09250 223 NHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAVR 302 (348)
T ss_pred HHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHHH
Confidence 6888999999999853221 000 01123445666667665 457999999999953 33 34
Q ss_pred HH---HHcCCCEEEEccccccCcchhhh
Q 020636 297 KA---LALGASGIFVSIMPCQCPLTEKI 321 (323)
Q Consensus 297 ka---l~lGAd~V~iG~~~~~~~~~~~~ 321 (323)
.+ +..||.++.+||=.+..|+-+-+
T Consensus 303 ~a~~~i~aGa~Gv~iGRNIfQ~~~~ea~ 330 (348)
T PRK09250 303 TAVINKRAGGMGLIIGRKAFQRPMAEGV 330 (348)
T ss_pred HHHHhhhcCCcchhhchhhhcCCcHHHH
Confidence 56 77899999999988887765543
No 276
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=96.88 E-value=0.012 Score=56.12 Aligned_cols=68 Identities=22% Similarity=0.276 Sum_probs=53.4
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
.+.++.+.++|+|.|+++.+.|.. ....+.++++++..+ ++||++ |.+.+.+++.+++.+|||+|.+|
T Consensus 96 ~~~~~~l~eagv~~I~vd~~~G~~----~~~~~~i~~ik~~~p-~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 96 KERAEALVEAGVDVIVIDSAHGHS----VYVIEMIKFIKKKYP-NVDVIA-GNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCc----HHHHHHHHHHHHHCC-CceEEE-CCCCCHHHHHHHHhcCCCEEEEC
Confidence 455888899999999986533321 234567777877654 588888 99999999999999999999984
No 277
>PRK08185 hypothetical protein; Provisional
Probab=96.86 E-value=0.11 Score=48.41 Aligned_cols=77 Identities=25% Similarity=0.313 Sum_probs=58.1
Q ss_pred CCHHHHHHHHHc-CCCEEEEcC---CCCCCCCC-CcchHHHHHHHHHHhcCCCeEEEecCCCCHH-HHHHHHHcCCCEEE
Q 020636 234 LTAEDARIAVQA-GAAGIIVSN---HGARQLDY-VPATIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGIF 307 (323)
Q Consensus 234 ~~~e~a~~~~~~-Gad~i~vs~---~gg~~~~~-~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~-di~kal~lGAd~V~ 307 (323)
.++++|+...+. |+|.+.++- ||-..... ..-.++.|.+|.+.+ ++|+++=||...+. ++.|++.+|..-|=
T Consensus 149 t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~--~iPLVlHGgsg~~~e~~~~ai~~GI~KiN 226 (283)
T PRK08185 149 TDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERV--DIPLVLHGGSANPDAEIAESVQLGVGKIN 226 (283)
T ss_pred CCHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhh--CCCEEEECCCCCCHHHHHHHHHCCCeEEE
Confidence 478999988875 999999864 33221111 112588999999888 89999999997665 55678899999999
Q ss_pred Ecccc
Q 020636 308 VSIMP 312 (323)
Q Consensus 308 iG~~~ 312 (323)
++|-+
T Consensus 227 i~T~l 231 (283)
T PRK08185 227 ISSDM 231 (283)
T ss_pred eChHH
Confidence 98865
No 278
>PRK12376 putative translaldolase; Provisional
Probab=96.85 E-value=0.16 Score=46.18 Aligned_cols=170 Identities=16% Similarity=0.180 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHcCCceeecCCC-------CCCHH----HHHhcCC-CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEe
Q 020636 89 GEYATARAASAAGTIMTLSSWS-------TSSVE----EVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (323)
Q Consensus 89 ~e~~~a~aa~~~G~~~~vs~~s-------~~~~e----ei~~~~~-~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~it 156 (323)
+++.-.+.+.+.|..-.++|.- ....+ ++++..+ ++..+|+. ..|.+.+.+..++..+.+ ..++|.
T Consensus 13 Ad~~eik~~~~~g~i~GVTTNPsll~k~g~~~~~~~~~~i~~~~~~~~vs~EV~-~~d~~~mv~eA~~l~~~~-~nv~VK 90 (236)
T PRK12376 13 ADLEEMLAAYKNPLVKGFTTNPSLMRKAGVTDYKAFAKEVLAEIPDAPISFEVF-ADDLETMEKEAEKIASLG-ENVYVK 90 (236)
T ss_pred CCHHHHHHHHhCCCeeEEECCHHHHHhcCCCCHHHHHHHHHHhcCCCcEEEEEe-cCCHHHHHHHHHHHHHhC-CCeEEE
Confidence 3556777777888777777641 11333 3444444 46888885 456655544445544444 234443
Q ss_pred cCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCH
Q 020636 157 VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA 236 (323)
Q Consensus 157 vd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~ 236 (323)
+ |.. ...| ..-.+.++.+.+. ++++-+-.+.++
T Consensus 91 I--P~T-------------------------------~~~G-------------~~gl~Ai~~L~~~-GI~vn~T~vfs~ 123 (236)
T PRK12376 91 I--PIT-------------------------------NTKG-------------ESTIPLIKKLSAD-GVKLNVTAIFTI 123 (236)
T ss_pred E--CCc-------------------------------Cccc-------------hhHHHHHHHHHHC-CCeEEEeeecCH
Confidence 3 220 0000 0013345666554 788888889999
Q ss_pred HHHHHHHHc----CCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhc--CCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 237 EDARIAVQA----GAAGIIVSNHGARQLDYVPATIMALEEVVKATQ--GRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 237 e~a~~~~~~----Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~--~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
..+..+.++ |+++|.. +-||-.|.+......+.++.+.+. .+..|++.+ ||+..++.+++.+|||.|-+.-
T Consensus 124 ~Qa~~a~~A~ag~ga~yisp--fvgR~dd~g~D~~~~i~~i~~i~~~~~~tkILaAS-iR~~~~v~~a~~~Gad~vTvp~ 200 (236)
T PRK12376 124 EQVKEVVDALTPGVPAIVSV--FAGRIADTGVDPVPLMKEALAICHSKPGVELLWAS-PREVYNIIQADQLGCDIITVTP 200 (236)
T ss_pred HHHHHHHHHhcCCCCeEEEE--ecchhhhcCCCcHHHHHHHHHHHHhCCCcEEEEEe-cCCHHHHHHHHHcCCCEEEcCH
Confidence 998755555 5887765 445544555556666666665552 256677755 9999999999999999998874
No 279
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=96.84 E-value=0.027 Score=49.86 Aligned_cols=125 Identities=20% Similarity=0.313 Sum_probs=75.4
Q ss_pred eecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccC
Q 020636 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (323)
Q Consensus 130 y~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (323)
|...+.+.+.+.++.++++|++++++.+=.+ |
T Consensus 66 Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~------------------------------------------------d 97 (201)
T PF03932_consen 66 YSDEEIEIMKEDIRMLRELGADGFVFGALTE------------------------------------------------D 97 (201)
T ss_dssp --HHHHHHHHHHHHHHHHTT-SEEEE--BET------------------------------------------------T
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeeEEEeECC------------------------------------------------C
Confidence 5555566777778888999999998653111 2
Q ss_pred CccCHHHHHHHHHhc-CCCEEEec----cCCHHH-HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeE
Q 020636 210 RSLSWKDVKWLQTIT-KLPILVKG----VLTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~-~~pv~vK~----i~~~e~-a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
..++.+.++.+.+.. +.|+.+.- +.+++. .+.+.++|++.|-.|+.-.. ....++.|+++.+..++++.|
T Consensus 98 g~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVLTSGg~~~----a~~g~~~L~~lv~~a~~~i~I 173 (201)
T PF03932_consen 98 GEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIELGFDRVLTSGGAPT----ALEGIENLKELVEQAKGRIEI 173 (201)
T ss_dssp SSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEEESTTSSS----TTTCHHHHHHHHHHHTTSSEE
T ss_pred CCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEECCCCCCC----HHHHHHHHHHHHHHcCCCcEE
Confidence 234555666666554 67777773 344554 46677999999988753322 233467777777776678999
Q ss_pred EEecCCCCHHHHHHHHH-cCCCEEE
Q 020636 284 FLDGGVRRGTDVFKALA-LGASGIF 307 (323)
Q Consensus 284 ia~GGI~~~~di~kal~-lGAd~V~ 307 (323)
++-|||+. ..+.+.++ .|+..+=
T Consensus 174 m~GgGv~~-~nv~~l~~~tg~~~~H 197 (201)
T PF03932_consen 174 MPGGGVRA-ENVPELVEETGVREIH 197 (201)
T ss_dssp EEESS--T-TTHHHHHHHHT-SEEE
T ss_pred EecCCCCH-HHHHHHHHhhCCeEEe
Confidence 99999976 44555555 7877653
No 280
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.84 E-value=0.0089 Score=53.49 Aligned_cols=81 Identities=26% Similarity=0.228 Sum_probs=59.4
Q ss_pred CHHHHHHHHHhcC----CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecC
Q 020636 213 SWKDVKWLQTITK----LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (323)
Q Consensus 213 ~~~~i~~i~~~~~----~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GG 288 (323)
..+.|+.+++.++ +.|-+..+++.++++.+.++|++.|+--+ ...+++.... .. ++|++- |
T Consensus 51 a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~FivsP~----------~~~~v~~~~~-~~--~i~~iP--G 115 (213)
T PRK06552 51 ASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVSPS----------FNRETAKICN-LY--QIPYLP--G 115 (213)
T ss_pred HHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHH-Hc--CCCEEC--C
Confidence 3567899988873 33444467999999999999999996311 1223343332 22 566665 8
Q ss_pred CCCHHHHHHHHHcCCCEEEE
Q 020636 289 VRRGTDVFKALALGASGIFV 308 (323)
Q Consensus 289 I~~~~di~kal~lGAd~V~i 308 (323)
+.|+.++.+++.+|||.|.+
T Consensus 116 ~~T~~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 116 CMTVTEIVTALEAGSEIVKL 135 (213)
T ss_pred cCCHHHHHHHHHcCCCEEEE
Confidence 99999999999999999998
No 281
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=96.81 E-value=0.015 Score=53.30 Aligned_cols=93 Identities=25% Similarity=0.288 Sum_probs=64.0
Q ss_pred HHHHHhcCCCEEEe------cc-----CCHH----HHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCe
Q 020636 218 KWLQTITKLPILVK------GV-----LTAE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 282 (323)
Q Consensus 218 ~~i~~~~~~pv~vK------~i-----~~~e----~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~p 282 (323)
..-...++.|+++- .+ .+++ -++.+.+.|||.|.+.-.| ..+...++.+.+ .+|
T Consensus 136 ~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg---------~~e~F~~vv~~~--~vp 204 (265)
T COG1830 136 VEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTG---------DPESFRRVVAAC--GVP 204 (265)
T ss_pred HHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCC---------ChHHHHHHHHhC--CCC
Confidence 33344578888773 12 2222 2568889999999874321 236677778877 599
Q ss_pred EEEecCCCC-HH-HH----HHHHHcCCCEEEEccccccCcchhhh
Q 020636 283 VFLDGGVRR-GT-DV----FKALALGASGIFVSIMPCQCPLTEKI 321 (323)
Q Consensus 283 via~GGI~~-~~-di----~kal~lGAd~V~iG~~~~~~~~~~~~ 321 (323)
|+.+||=++ .+ ++ ..++..||.++.+||=++..++-+.+
T Consensus 205 VviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~~p~~m 249 (265)
T COG1830 205 VVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQHEDPEAM 249 (265)
T ss_pred EEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhccCChHHH
Confidence 999999998 32 22 34566899999999988887765554
No 282
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=96.78 E-value=0.073 Score=47.58 Aligned_cols=91 Identities=16% Similarity=0.136 Sum_probs=59.9
Q ss_pred HHHHHHHHHhcCCCEE---Eec-----c---CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCe
Q 020636 214 WKDVKWLQTITKLPIL---VKG-----V---LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 282 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~---vK~-----i---~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~p 282 (323)
.+.++++++.+++|++ .|. + .+.++++.+.++|+|.|++...-....+ +....+++..+.+. ..++
T Consensus 45 ~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~p~-~~~~~~~i~~~~~~--~~i~ 121 (221)
T PRK01130 45 VEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIALDATLRPRPD-GETLAELVKRIKEY--PGQL 121 (221)
T ss_pred HHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCCCC-CCCHHHHHHHHHhC--CCCe
Confidence 4467778887888886 222 1 2467899999999998877532111000 01223455555443 2677
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 283 VFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 283 via~GGI~~~~di~kal~lGAd~V~iG 309 (323)
++. ++.+.+++.++..+|+|.+.++
T Consensus 122 vi~--~v~t~ee~~~a~~~G~d~i~~~ 146 (221)
T PRK01130 122 LMA--DCSTLEEGLAAQKLGFDFIGTT 146 (221)
T ss_pred EEE--eCCCHHHHHHHHHcCCCEEEcC
Confidence 775 5789999999999999999874
No 283
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=96.76 E-value=0.074 Score=50.83 Aligned_cols=96 Identities=27% Similarity=0.437 Sum_probs=63.4
Q ss_pred HHHHHHHHHhcCCCEEEecc-C-CHHH----HHHHHHcCCCEEEEcCCCCCCCCC-Cc--chHHHHHHHHHHhcCCCeEE
Q 020636 214 WKDVKWLQTITKLPILVKGV-L-TAED----ARIAVQAGAAGIIVSNHGARQLDY-VP--ATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK~i-~-~~e~----a~~~~~~Gad~i~vs~~gg~~~~~-~~--~~~~~l~~i~~~~~~~~pvi 284 (323)
...++++.+ ++.||++|-- . +.++ ++.+...|-+-+++.-.|.+.... .. ..+..++.+++.. ..|||
T Consensus 190 ~~LL~~va~-~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~~--~lPVi 266 (335)
T PRK08673 190 FDLLKEVGK-TNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSAVPVIKKLT--HLPVI 266 (335)
T ss_pred HHHHHHHHc-CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHHHHHHHHhc--CCCEE
Confidence 344555543 5889999943 3 6776 345557888878776655544422 22 2455677777655 68999
Q ss_pred EecCCCCH------HHHHHHHHcCCCEEEEcccc
Q 020636 285 LDGGVRRG------TDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 285 a~GGI~~~------~di~kal~lGAd~V~iG~~~ 312 (323)
++-.=.+| .-...|+++|||+++|-..+
T Consensus 267 ~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~ 300 (335)
T PRK08673 267 VDPSHATGKRDLVEPLALAAVAAGADGLIVEVHP 300 (335)
T ss_pred EeCCCCCccccchHHHHHHHHHhCCCEEEEEecC
Confidence 97544444 45577889999999998765
No 284
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=96.73 E-value=0.045 Score=50.21 Aligned_cols=197 Identities=16% Similarity=0.189 Sum_probs=96.0
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCC---------CC----C-----------HHHHHhcCC-Ccee
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWS---------TS----S-----------VEEVASTGP-GIRF 126 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s---------~~----~-----------~eei~~~~~-~~~~ 126 (323)
.||+-+..|. + -.|+.+.+.|+.+++--.| |. + -+||....+ .|.+
T Consensus 15 ~pIig~gaGt-G--------lsAk~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em~~eiLp~v~~tPVi 85 (268)
T PF09370_consen 15 KPIIGAGAGT-G--------LSAKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEMAREILPVVKDTPVI 85 (268)
T ss_dssp --EEEEEESS-H--------HHHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHHHHHHGGG-SSS-EE
T ss_pred CceEEEeecc-c--------hhhHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHHHHhhhhhccCCCEE
Confidence 5777766433 3 4899999999988765311 10 0 133333333 5677
Q ss_pred EEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhh
Q 020636 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAG 206 (323)
Q Consensus 127 ~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (323)
+-+.....-..+...++++++.||.++. | -|..|.-.-..|+.+. ..++
T Consensus 86 aGv~atDP~~~~~~fl~~lk~~Gf~GV~-N--fPTvgliDG~fR~~LE----------------------e~Gm------ 134 (268)
T PF09370_consen 86 AGVCATDPFRDMDRFLDELKELGFSGVQ-N--FPTVGLIDGQFRQNLE----------------------ETGM------ 134 (268)
T ss_dssp EEE-TT-TT--HHHHHHHHHHHT-SEEE-E---S-GGG--HHHHHHHH----------------------HTT-------
T ss_pred EEecCcCCCCcHHHHHHHHHHhCCceEE-E--CCcceeeccHHHHHHH----------------------hcCC------
Confidence 7776533335667788999999998874 3 3544321111111000 0000
Q ss_pred ccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcC---CCCCC-CCCCcc---hHHHHHHHHHHh--
Q 020636 207 QIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN---HGARQ-LDYVPA---TIMALEEVVKAT-- 277 (323)
Q Consensus 207 ~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~---~gg~~-~~~~~~---~~~~l~~i~~~~-- 277 (323)
--+...+.|+..++. + -+.+.-+.++++|+...++|+|.|+++- .||.- .....+ ..+.+.++.+++
T Consensus 135 --gy~~EVemi~~A~~~-g-l~T~~yvf~~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~ 210 (268)
T PF09370_consen 135 --GYDREVEMIRKAHEK-G-LFTTAYVFNEEQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARA 210 (268)
T ss_dssp ---HHHHHHHHHHHHHT-T--EE--EE-SHHHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHC
T ss_pred --CHHHHHHHHHHHHHC-C-CeeeeeecCHHHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHH
Confidence 001123334444432 3 2455557899999999999999999853 12221 111221 123344444433
Q ss_pred -cCCCeEEE-ecCCCCHHHHHHHHH--cCCCEEEEcccc
Q 020636 278 -QGRIPVFL-DGGVRRGTDVFKALA--LGASGIFVSIMP 312 (323)
Q Consensus 278 -~~~~pvia-~GGI~~~~di~kal~--lGAd~V~iG~~~ 312 (323)
+.++-++. -|-|.+++|+...+. -|+++..=|+.+
T Consensus 211 v~~dii~l~hGGPI~~p~D~~~~l~~t~~~~Gf~G~Ss~ 249 (268)
T PF09370_consen 211 VNPDIIVLCHGGPIATPEDAQYVLRNTKGIHGFIGASSM 249 (268)
T ss_dssp C-TT-EEEEECTTB-SHHHHHHHHHH-TTEEEEEESTTT
T ss_pred hCCCeEEEEeCCCCCCHHHHHHHHhcCCCCCEEecccch
Confidence 33444444 456999999999998 368888877765
No 285
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=96.72 E-value=0.0062 Score=54.27 Aligned_cols=109 Identities=16% Similarity=0.099 Sum_probs=68.1
Q ss_pred cCHHHHHHHHHhcCCCEEEecc---CCHHH-HHHHHHcCCCEEEEcCCCCCC-C--------------------C-----
Q 020636 212 LSWKDVKWLQTITKLPILVKGV---LTAED-ARIAVQAGAAGIIVSNHGARQ-L--------------------D----- 261 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~i---~~~e~-a~~~~~~Gad~i~vs~~gg~~-~--------------------~----- 261 (323)
+..+.++++|+...+++=+|.- .+.+. ++.+.++|||.+.++...|.. + .
T Consensus 42 ~G~~~v~~ir~~~~i~~D~k~~di~~~~~~~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~ 121 (215)
T PRK13813 42 SGLGIIEELKRYAPVIADLKVADIPNTNRLICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGAL 121 (215)
T ss_pred hCHHHHHHHHhcCCEEEEeeccccHHHHHHHHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCC
Confidence 3467888898876555557753 23443 377889999999986533210 0 0
Q ss_pred --------------------C---CcchHHHHHHHHHHhcCCCeEEEecCCCCHH-HHHHHHHcCCCEEEEccccccCcc
Q 020636 262 --------------------Y---VPATIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 262 --------------------~---~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~-di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
+ ....++-+.++++..+.++ .+++|||+... ++.+++..|||.+.+||.++..++
T Consensus 122 ~~~~~~~~~v~~m~~e~G~~g~~~~~~~~~~i~~l~~~~~~~~-~ivdgGI~~~g~~~~~~~~aGad~iV~Gr~I~~~~d 200 (215)
T PRK13813 122 EFIQPHADKLAKLAQEAGAFGVVAPATRPERVRYIRSRLGDEL-KIISPGIGAQGGKAADAIKAGADYVIVGRSIYNAAD 200 (215)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEECCCcchhHHHHHHhcCCCc-EEEeCCcCCCCCCHHHHHHcCCCEEEECcccCCCCC
Confidence 0 0011122233333332122 34999999863 677888999999999999988776
Q ss_pred hhhh
Q 020636 318 TEKI 321 (323)
Q Consensus 318 ~~~~ 321 (323)
..+.
T Consensus 201 ~~~~ 204 (215)
T PRK13813 201 PREA 204 (215)
T ss_pred HHHH
Confidence 5543
No 286
>TIGR02134 transald_staph transaldolase. This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway.
Probab=96.71 E-value=0.32 Score=44.21 Aligned_cols=170 Identities=12% Similarity=0.094 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHcCCceeecCCC------C-CCHHHHHh-----cCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEe
Q 020636 89 GEYATARAASAAGTIMTLSSWS------T-SSVEEVAS-----TGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (323)
Q Consensus 89 ~e~~~a~aa~~~G~~~~vs~~s------~-~~~eei~~-----~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~it 156 (323)
.++.-.+.+.+.|..-.++|.- . ...+++.+ ..+++..+|++ ..|.+.+.+..+++.+.+ ..++|.
T Consensus 13 Ad~~ei~~~~~~g~i~GvTTNPsll~k~g~~~~~~~~~~i~~~~~~~~vs~EV~-~~d~~~m~~eA~~l~~~~-~nv~VK 90 (236)
T TIGR02134 13 ANLEEMVKFSTHPYVKGFTTNPSLMRKAGIVDYEAFAHEALAQITDLPISFEVF-ADDLDEMEKEARYIASWG-NNVNVK 90 (236)
T ss_pred CCHHHHHHHHhCCCeeEEeCCHHHHHhcCCCCHHHHHHHHHHHccCCcEEEEEe-cCCHHHHHHHHHHHHhcC-CCeEEE
Confidence 3556777788888777777641 1 12333322 22467889986 456665555555555555 334444
Q ss_pred cCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCH
Q 020636 157 VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA 236 (323)
Q Consensus 157 vd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~ 236 (323)
+ |.. .. ......+.++.+++. ++++-+-.+.+.
T Consensus 91 I--P~T-------------------------~~-------------------~G~~~l~ai~~L~~~-GI~vn~T~vfs~ 123 (236)
T TIGR02134 91 I--PVT-------------------------NT-------------------KGESTGPLIQKLSAD-GITLNVTALTTI 123 (236)
T ss_pred E--CCc-------------------------Cc-------------------ccchHHHHHHHHHHC-CCcEEeehcCCH
Confidence 3 220 00 000124456667665 788888889999
Q ss_pred HHHHHH---HHcC-CCEEEEcCCCCCCCCCCcchHHHHHHHHHHhc--CCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 237 EDARIA---VQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQ--GRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 237 e~a~~~---~~~G-ad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~--~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
..+..+ ..+| +++|.. +-||--|.+......+.++.+.+. .+..|++.+ +|+..++.++..+|||.+-+.-
T Consensus 124 ~Qa~~aa~A~~aG~a~yisp--fvgR~dd~g~D~~~~i~~i~~i~~~~~~tkILaAS-~R~~~~v~~a~~~Gad~vTvp~ 200 (236)
T TIGR02134 124 EQVEKVCQSFTDGVPGIVSV--FAGRIADTGVDPEPHMREALEIVAQKPGVELLWAS-PRELFNIIQADRIGCDIITCAH 200 (236)
T ss_pred HHHHHHHHHHhCCCCeEEEE--ecchhhhcCCCcHHHHHHHHHHHHhCCCcEEEEEc-cCCHHHHHHHHHcCCCEEECCH
Confidence 888864 4589 587765 445544555556666666665542 257788766 9999999999999999998873
No 287
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=96.70 E-value=0.095 Score=46.81 Aligned_cols=90 Identities=16% Similarity=0.165 Sum_probs=59.2
Q ss_pred HHHHHHHHhcCCCEEE---ecc--------CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeE
Q 020636 215 KDVKWLQTITKLPILV---KGV--------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~v---K~i--------~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
+.++++++..++|++. |+. .+.++++.+.++|+|.|.+.....+. .......+.+.++++.. ++++
T Consensus 50 ~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~~-p~~~~~~~~i~~~~~~g--~~~i 126 (219)
T cd04729 50 EDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRPR-PDGETLAELIKRIHEEY--NCLL 126 (219)
T ss_pred HHHHHHHHhCCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCCC-CCCcCHHHHHHHHHHHh--CCeE
Confidence 3566677767888863 332 23568999999999987764321110 01112335555555543 5777
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 284 FLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
++ ++.|.+++.++..+|+|.+.+.
T Consensus 127 iv--~v~t~~ea~~a~~~G~d~i~~~ 150 (219)
T cd04729 127 MA--DISTLEEALNAAKLGFDIIGTT 150 (219)
T ss_pred EE--ECCCHHHHHHHHHcCCCEEEcc
Confidence 76 6899999999999999999764
No 288
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=96.69 E-value=0.033 Score=51.46 Aligned_cols=41 Identities=22% Similarity=0.373 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcC
Q 020636 214 WKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSN 254 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~ 254 (323)
.+.++.+|+.++.|+.+. ||.++|+++.+.+.|||+++|..
T Consensus 191 ~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 191 KKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred HHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECH
Confidence 456888999889999998 67899999999999999999943
No 289
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=96.69 E-value=0.0082 Score=54.02 Aligned_cols=77 Identities=18% Similarity=0.128 Sum_probs=59.9
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHH--cCCCEEEEccccc
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA--LGASGIFVSIMPC 313 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~--lGAd~V~iG~~~~ 313 (323)
.+-|+...+.|+|.+.+-.--+. .+.+..++.+.++.+. +|+.+.|||||.+|+.+++. .||+.|.+||..+
T Consensus 39 ~~~a~~~~~~g~~~l~ivDLd~~--~~~~~n~~~i~~i~~~----~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a~ 112 (221)
T TIGR00734 39 DDAAKVIEEIGARFIYIADLDRI--VGLGDNFSLLSKLSKR----VELIADCGVRSPEDLETLPFTLEFASRVVVATETL 112 (221)
T ss_pred HHHHHHHHHcCCCEEEEEEcccc--cCCcchHHHHHHHHhh----CcEEEcCccCCHHHHHHHHhhhccceEEeecChhh
Confidence 45678888999999987432221 1345678888888774 48999999999999999865 2699999999998
Q ss_pred cCcch
Q 020636 314 QCPLT 318 (323)
Q Consensus 314 ~~~~~ 318 (323)
.+|.+
T Consensus 113 ~~p~~ 117 (221)
T TIGR00734 113 DITEL 117 (221)
T ss_pred CCHHH
Confidence 88863
No 290
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.68 E-value=0.008 Score=58.68 Aligned_cols=68 Identities=12% Similarity=0.201 Sum_probs=52.8
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
.+.+..+.++|+|.|++....|. .....+.++++++.++ +++|+ .|+|.|.+++..++.+|||+|.+|
T Consensus 155 ~~~v~~lv~aGvDvI~iD~a~g~----~~~~~~~v~~ik~~~p-~~~vi-~g~V~T~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 155 IERVEELVKAHVDILVIDSAHGH----STRIIELVKKIKTKYP-NLDLI-AGNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_pred HHHHHHHHhcCCCEEEEECCCCC----ChhHHHHHHHHHhhCC-CCcEE-EEecCCHHHHHHHHHcCCCEEEEC
Confidence 36799999999999997542221 2345577888887764 45544 599999999999999999999887
No 291
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=96.66 E-value=0.012 Score=52.94 Aligned_cols=40 Identities=25% Similarity=0.445 Sum_probs=32.6
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEE
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIV 252 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~v 252 (323)
+...++.|++..++||+|- |+.++.+|..+.+.|+|+|-+
T Consensus 163 n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AMElG~daVLv 203 (247)
T PF05690_consen 163 NPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLV 203 (247)
T ss_dssp THHHHHHHHHHGSSSBEEES---SHHHHHHHHHTT-SEEEE
T ss_pred CHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCceeeh
Confidence 4567888999999999988 789999999999999999987
No 292
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=96.66 E-value=0.026 Score=51.14 Aligned_cols=42 Identities=21% Similarity=0.138 Sum_probs=36.3
Q ss_pred cCHHHHHHHHHhcC-CCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 212 LSWKDVKWLQTITK-LPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 212 ~~~~~i~~i~~~~~-~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
..|+.|+.+++.++ +||+.- ++.+.+||++.++.|||+|.+.
T Consensus 177 a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vmvg 220 (231)
T TIGR00736 177 ADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVA 220 (231)
T ss_pred hhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEc
Confidence 46999999999984 887665 5799999999999999999884
No 293
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=96.66 E-value=0.016 Score=51.13 Aligned_cols=81 Identities=28% Similarity=0.288 Sum_probs=55.8
Q ss_pred CHHHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 020636 213 SWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (323)
Q Consensus 213 ~~~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~ 291 (323)
..+.|+.++++++ +-|-+..+.+.++++.+.++||+.++--+ -+-+.+..+.+ . ++|++- |+.|
T Consensus 46 a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP~----------~~~~v~~~~~~-~--~i~~iP--G~~T 110 (196)
T PF01081_consen 46 ALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSPG----------FDPEVIEYARE-Y--GIPYIP--GVMT 110 (196)
T ss_dssp HHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEESS------------HHHHHHHHH-H--TSEEEE--EESS
T ss_pred HHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHHH-c--CCcccC--CcCC
Confidence 3567888888874 33445568999999999999999996521 12344444443 2 566664 7999
Q ss_pred HHHHHHHHHcCCCEEEE
Q 020636 292 GTDVFKALALGASGIFV 308 (323)
Q Consensus 292 ~~di~kal~lGAd~V~i 308 (323)
+.++.+|+.+||+.|=+
T Consensus 111 ptEi~~A~~~G~~~vK~ 127 (196)
T PF01081_consen 111 PTEIMQALEAGADIVKL 127 (196)
T ss_dssp HHHHHHHHHTT-SEEEE
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 99999999999999865
No 294
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=96.63 E-value=0.015 Score=52.89 Aligned_cols=41 Identities=22% Similarity=0.506 Sum_probs=36.4
Q ss_pred cCHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEE
Q 020636 212 LSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIV 252 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~v 252 (323)
.+...|+.|++..++||++- ||.+++|+..+.+.|+|+|-+
T Consensus 176 ~n~~~l~~i~e~~~vpVivdAGIgt~sDa~~AmElGaDgVL~ 217 (267)
T CHL00162 176 QNLLNLQIIIENAKIPVIIDAGIGTPSEASQAMELGASGVLL 217 (267)
T ss_pred CCHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHHHcCCCEEee
Confidence 35667888999889999888 889999999999999999976
No 295
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=96.61 E-value=0.033 Score=52.38 Aligned_cols=94 Identities=16% Similarity=0.133 Sum_probs=67.3
Q ss_pred HHHHHHHhcC-CC---EEEeccCCHHHHHHHHH------cCCCEEEEcCC--CCCCCCCCcchHHHHHHHHHHhcCCCeE
Q 020636 216 DVKWLQTITK-LP---ILVKGVLTAEDARIAVQ------AGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 216 ~i~~i~~~~~-~p---v~vK~i~~~e~a~~~~~------~Gad~i~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
.++.+++..+ .+ -|.-.+.+.++++.+.+ +|+|.|.+.|. ..... ..+.+.+.+..+.++++.++
T Consensus 189 av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~~---~~~~e~l~~av~~~~~~~~l 265 (308)
T PLN02716 189 AVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENG---DVDVSMLKEAVELINGRFET 265 (308)
T ss_pred HHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccCCCCEEEeCCCccccccc---CCCHHHHHHHHHhhCCCceE
Confidence 4666666321 11 12335689999999999 99999999874 21111 12556666766666667899
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEccccc
Q 020636 284 FLDGGVRRGTDVFKALALGASGIFVSIMPC 313 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lGAd~V~iG~~~~ 313 (323)
-++|||. .+.+.+....|+|.+.+|....
T Consensus 266 EaSGGIt-~~ni~~yA~tGVD~Is~Galth 294 (308)
T PLN02716 266 EASGNVT-LDTVHKIGQTGVTYISSGALTH 294 (308)
T ss_pred EEECCCC-HHHHHHHHHcCCCEEEeCcccc
Confidence 9999994 6778888889999999998665
No 296
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=96.55 E-value=0.082 Score=48.26 Aligned_cols=125 Identities=16% Similarity=0.250 Sum_probs=79.1
Q ss_pred eecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccC
Q 020636 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (323)
Q Consensus 130 y~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (323)
|...+.+.+.+-++.++++|++++++.+=.+ +
T Consensus 67 Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~------------------------------------------------d 98 (248)
T PRK11572 67 YSDGEFAAMLEDIATVRELGFPGLVTGVLDV------------------------------------------------D 98 (248)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEeeECC------------------------------------------------C
Confidence 4444556677778888899999998754221 2
Q ss_pred CccCHHHHHHHHHhc-CCCEEEec----cCCHHH-HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeE
Q 020636 210 RSLSWKDVKWLQTIT-KLPILVKG----VLTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~-~~pv~vK~----i~~~e~-a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
..++.+.++.+.+.. +.|+.+.- +.++.. .+.+.+.|++.|-.|+...+ ....++.|.++.+...+.+ |
T Consensus 99 g~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG~~rILTSGg~~~----a~~g~~~L~~lv~~a~~~~-I 173 (248)
T PRK11572 99 GHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADLGVARILTSGQQQD----AEQGLSLIMELIAASDGPI-I 173 (248)
T ss_pred CCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHcCCCEEECCCCCCC----HHHHHHHHHHHHHhcCCCE-E
Confidence 224555666666555 57777762 234444 46688999999977653221 2334566777766554434 7
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEE
Q 020636 284 FLDGGVRRGTDVFKALALGASGIFV 308 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lGAd~V~i 308 (323)
++-|||+ ...+.+.+..|+..+=.
T Consensus 174 m~GgGV~-~~Nv~~l~~tG~~~~H~ 197 (248)
T PRK11572 174 MAGAGVR-LSNLHKFLDAGVREVHS 197 (248)
T ss_pred EeCCCCC-HHHHHHHHHcCCCEEee
Confidence 7777775 56666666799887754
No 297
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.55 E-value=0.12 Score=48.29 Aligned_cols=75 Identities=16% Similarity=0.206 Sum_probs=58.7
Q ss_pred CCHHHHHHHH-HcCCCEEEEcC---CCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH-HHHHHHHHcCCCEEEE
Q 020636 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFV 308 (323)
Q Consensus 234 ~~~e~a~~~~-~~Gad~i~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~-~di~kal~lGAd~V~i 308 (323)
.++++|.... +.|+|.+-++. ||-.. +..-.++.|.+|.+.+ ++|+..-||=..+ +++.+++.+|+.-|=+
T Consensus 153 T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~--~p~l~~~~l~~I~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi 228 (283)
T PRK07998 153 TEPEKVKDFVERTGCDMLAVSIGNVHGLED--IPRIDIPLLKRIAEVS--PVPLVIHGGSGIPPEILRSFVNYKVAKVNI 228 (283)
T ss_pred CCHHHHHHHHHHhCcCeeehhccccccCCC--CCCcCHHHHHHHHhhC--CCCEEEeCCCCCCHHHHHHHHHcCCcEEEE
Confidence 5788887766 69999999864 55332 1222478999999888 8999999988777 6677899999999999
Q ss_pred cccc
Q 020636 309 SIMP 312 (323)
Q Consensus 309 G~~~ 312 (323)
+|-+
T Consensus 229 ~Tel 232 (283)
T PRK07998 229 ASDL 232 (283)
T ss_pred CHHH
Confidence 9865
No 298
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=96.54 E-value=0.49 Score=43.42 Aligned_cols=94 Identities=26% Similarity=0.414 Sum_probs=64.2
Q ss_pred CHHHHHHHHHhcCCCEEEecc--CCHHH----HHHHHHcCCCEEEEcCCCCCCCCCC---cchHHHHHHHHHHhcCCCeE
Q 020636 213 SWKDVKWLQTITKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYV---PATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~i--~~~e~----a~~~~~~Gad~i~vs~~gg~~~~~~---~~~~~~l~~i~~~~~~~~pv 283 (323)
+++.++++-+ .+.||++|-- .|.|+ |+..+..|-..|++.-+|=|..+.. .-++..++.+++.. ..||
T Consensus 141 NF~LLke~G~-~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~~TRntLDi~aV~~~kq~T--HLPV 217 (286)
T COG2876 141 NFALLKEVGR-QNKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILCERGIRTFEKATRNTLDISAVPILKQET--HLPV 217 (286)
T ss_pred hhHHHHHhcc-cCCCeEEecCccccHHHHHHHHHHHHhCCCCcEEEEecccccccccccceechHHHHHHHhhc--CCCE
Confidence 3455555533 4789999933 56666 7778899999999988886655432 22456777777766 7999
Q ss_pred EEec----CCCCHHH--HHHHHHcCCCEEEEc
Q 020636 284 FLDG----GVRRGTD--VFKALALGASGIFVS 309 (323)
Q Consensus 284 ia~G----GI~~~~d--i~kal~lGAd~V~iG 309 (323)
|+|= |=|+.-. +..|++.|||++|+-
T Consensus 218 ivDpSH~~Grr~lv~pla~AA~AaGAdglmiE 249 (286)
T COG2876 218 IVDPSHATGRRDLVEPLAKAAIAAGADGLMIE 249 (286)
T ss_pred EECCCCcccchhhHHHHHHHHHhccCCeeEEE
Confidence 9964 3333322 235677999999984
No 299
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=96.52 E-value=0.075 Score=51.01 Aligned_cols=96 Identities=22% Similarity=0.450 Sum_probs=64.6
Q ss_pred HHHHHHHHHhcCCCEEEe-ccC-CHHH----HHHHHHcCCCEEEEcCCCCCCCCC----CcchHHHHHHHHHHhcCCCeE
Q 020636 214 WKDVKWLQTITKLPILVK-GVL-TAED----ARIAVQAGAAGIIVSNHGARQLDY----VPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK-~i~-~~e~----a~~~~~~Gad~i~vs~~gg~~~~~----~~~~~~~l~~i~~~~~~~~pv 283 (323)
.+.++++.+ ++.||++| |.. +.++ ++.+.+.|-+-|++.-.|-|.... ...++..++.+++.. .+||
T Consensus 198 ~~LL~~va~-t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~--~lPV 274 (352)
T PRK13396 198 FSLLKKVGA-QDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLT--HLPI 274 (352)
T ss_pred HHHHHHHHc-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhh--CCCE
Confidence 445666654 58899999 444 7777 445556798888887665544421 234577888887765 6899
Q ss_pred EEec----CCCC--HHHHHHHHHcCCCEEEEcccc
Q 020636 284 FLDG----GVRR--GTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 284 ia~G----GI~~--~~di~kal~lGAd~V~iG~~~ 312 (323)
|+|- |.++ ..-...|+++|||+++|=..+
T Consensus 275 i~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H~ 309 (352)
T PRK13396 275 MIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVHP 309 (352)
T ss_pred EECCcccCCcHHHHHHHHHHHHhhCCCeEEEEecC
Confidence 9973 3332 244557788999999997665
No 300
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=96.52 E-value=0.0096 Score=53.10 Aligned_cols=73 Identities=23% Similarity=0.289 Sum_probs=56.7
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
.+.|+...+.||++|.+..-.+. ....++.+..+++.+ ++||+.-|+|++..++..++++|||+|.++...+.
T Consensus 34 ~~~A~~~~~~GA~~l~v~~~~~~----~~g~~~~~~~i~~~v--~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~ 106 (217)
T cd00331 34 VEIAKAYEKAGAAAISVLTEPKY----FQGSLEDLRAVREAV--SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALD 106 (217)
T ss_pred HHHHHHHHHcCCCEEEEEeCccc----cCCCHHHHHHHHHhc--CCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCC
Confidence 46688999999999987432111 112446677777766 79999999999999999999999999999887654
No 301
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.48 E-value=0.014 Score=58.76 Aligned_cols=251 Identities=19% Similarity=0.261 Sum_probs=137.8
Q ss_pred hhcccccccccc-cCCCCCccceeec-CcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 020636 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (323)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~~d~~t~i~-g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~ 119 (323)
.||++.|+|... ...+++|++|.+- +..++.||+.|||... +|..||.+.+++|...+++. ..++|+..+
T Consensus 19 t~ddv~l~p~~~~~~~~~v~~~t~l~~~~~l~~Pii~a~M~~v------t~~~ma~a~a~~GglGvi~~--~~~~e~~~~ 90 (495)
T PTZ00314 19 TYDDVILLPGYIDFSRDDVDLSTRLTRNIRLKIPIVSSPMDTV------TEHKMAIAMALMGGIGVIHN--NCSIEEQVE 90 (495)
T ss_pred CccceEecccccccccccccccccccCCcccCCceeecCcccc------ccHHHHHHHHHCCCeEEecC--CCCHHHHHH
Confidence 499999999865 3556889998876 4688999999999664 56789999999999999975 456666543
Q ss_pred cC----C--CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCC----CCCC-chHHHHhhccCCCCccccccccccc
Q 020636 120 TG----P--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT----PRLG-RREADIKNRFTLPPFLTLKNFQGLD 188 (323)
Q Consensus 120 ~~----~--~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~----p~~g-~r~~d~~~~~~~~~~~~~~~~~~~~ 188 (323)
.. . ...............+.+.++..++.++..+.|+-+. -..| ...+|++..- .....+..+...
T Consensus 91 ~v~kvk~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~--~~~~~V~diMt~- 167 (495)
T PTZ00314 91 EVRKVKRFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK--DKSTPVSEVMTP- 167 (495)
T ss_pred HHhhccccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc--cCCCCHHHhhCC-
Confidence 21 1 1111111111112233455566677788777764321 1112 2334443110 000000000000
Q ss_pred cCCCccc-cchhh---HHHHhhc-------cCC------ccCHHHHHHHHHh------cCCCEEEecc-----CCHHHHH
Q 020636 189 LGKMDEA-NDSGL---AAYVAGQ-------IDR------SLSWKDVKWLQTI------TKLPILVKGV-----LTAEDAR 240 (323)
Q Consensus 189 ~~~~~~~-~~~~~---~~~~~~~-------~~~------~~~~~~i~~i~~~------~~~pv~vK~i-----~~~e~a~ 240 (323)
..+.... ....+ .+.+... .|. -.+.+++...... -...+.|... ...+.++
T Consensus 168 ~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~~p~a~~D~~GrL~Vgaavg~~~~~~~~~~ 247 (495)
T PTZ00314 168 REKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRGYPNASLDSNGQLLVGAAISTRPEDIERAA 247 (495)
T ss_pred cCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcccCchhhhccCCCEEEEEEECCCHHHHHHHH
Confidence 0000000 00000 0000000 000 0122222222110 0133444321 1246688
Q ss_pred HHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 241 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 241 ~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
.+.++|+|.|.+....|+. .-.++.++++++..+ +++|++ |.|.|.+++..++.+|||++-+|
T Consensus 248 ~l~~ag~d~i~id~a~G~s----~~~~~~i~~ik~~~~-~~~v~a-G~V~t~~~a~~~~~aGad~I~vg 310 (495)
T PTZ00314 248 ALIEAGVDVLVVDSSQGNS----IYQIDMIKKLKSNYP-HVDIIA-GNVVTADQAKNLIDAGADGLRIG 310 (495)
T ss_pred HHHHCCCCEEEEecCCCCc----hHHHHHHHHHHhhCC-CceEEE-CCcCCHHHHHHHHHcCCCEEEEC
Confidence 9999999999987533321 224678888888764 678887 99999999999999999999765
No 302
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.47 E-value=0.023 Score=50.40 Aligned_cols=81 Identities=15% Similarity=0.169 Sum_probs=58.0
Q ss_pred CHHHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 020636 213 SWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (323)
Q Consensus 213 ~~~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~ 291 (323)
..+.|+.+++.++ +-|-...+++.++++.+.++|++.++--+ ...+++.... .. ++|++ =|+.|
T Consensus 42 a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~----------~~~~vi~~a~-~~--~i~~i--PG~~T 106 (201)
T PRK06015 42 ALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSPG----------TTQELLAAAN-DS--DVPLL--PGAAT 106 (201)
T ss_pred HHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHH-Hc--CCCEe--CCCCC
Confidence 3566888888774 33444568999999999999999986321 1233443333 22 44444 58999
Q ss_pred HHHHHHHHHcCCCEEEE
Q 020636 292 GTDVFKALALGASGIFV 308 (323)
Q Consensus 292 ~~di~kal~lGAd~V~i 308 (323)
+.++..|+.+||+.|=+
T Consensus 107 ptEi~~A~~~Ga~~vK~ 123 (201)
T PRK06015 107 PSEVMALREEGYTVLKF 123 (201)
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 99999999999999866
No 303
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=96.46 E-value=0.026 Score=50.23 Aligned_cols=80 Identities=24% Similarity=0.275 Sum_probs=57.5
Q ss_pred HHHHHHHHHhcCCCEEE--eccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 020636 214 WKDVKWLQTITKLPILV--KGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~v--K~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~ 291 (323)
.+.|+.+++.++.++.+ ..+.+.++++.+.++|+|+++..+ .+.+.+.. .... .++++. |+.|
T Consensus 49 ~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~----------~~~~v~~~-~~~~--~~~~~~--G~~t 113 (206)
T PRK09140 49 FDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPN----------TDPEVIRR-AVAL--GMVVMP--GVAT 113 (206)
T ss_pred HHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCC----------CCHHHHHH-HHHC--CCcEEc--ccCC
Confidence 45688888887644444 467999999999999999996521 12233322 2222 455554 3999
Q ss_pred HHHHHHHHHcCCCEEEE
Q 020636 292 GTDVFKALALGASGIFV 308 (323)
Q Consensus 292 ~~di~kal~lGAd~V~i 308 (323)
.+++.++..+|||.|.+
T Consensus 114 ~~E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 114 PTEAFAALRAGAQALKL 130 (206)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 99999999999999987
No 304
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=96.45 E-value=0.051 Score=50.17 Aligned_cols=93 Identities=25% Similarity=0.277 Sum_probs=68.9
Q ss_pred CHH-HHHHHHHhcCC-CEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHH--hcCCCeEEEecC
Q 020636 213 SWK-DVKWLQTITKL-PILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA--TQGRIPVFLDGG 288 (323)
Q Consensus 213 ~~~-~i~~i~~~~~~-pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~--~~~~~pvia~GG 288 (323)
+|+ .++..|+..+. +.+--.+.+.++++++.++|+|.|.+.|. +.+.+.++.+. .++++-+=++||
T Consensus 173 ~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~agaDiImLDNm----------~~e~~~~av~~l~~~~~~~lEaSGg 242 (280)
T COG0157 173 SITEAVRRARAAAPFTKKIEVEVESLEEAEEALEAGADIIMLDNM----------SPEELKEAVKLLGLAGRALLEASGG 242 (280)
T ss_pred cHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHcCCCEEEecCC----------CHHHHHHHHHHhccCCceEEEEeCC
Confidence 354 47888887543 22333579999999999999999999873 23445555555 445678889999
Q ss_pred CCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 289 VRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 289 I~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
| +.+.+......|.|.+.+|..-...|
T Consensus 243 I-t~~ni~~yA~tGVD~IS~galths~~ 269 (280)
T COG0157 243 I-TLENIREYAETGVDVISVGALTHSAP 269 (280)
T ss_pred C-CHHHHHHHhhcCCCEEEeCccccCCc
Confidence 8 56778888889999999998765555
No 305
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=96.42 E-value=0.017 Score=54.58 Aligned_cols=92 Identities=20% Similarity=0.356 Sum_probs=60.8
Q ss_pred HhcCCCceeEEeeecCC--hHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccc
Q 020636 118 ASTGPGIRFFQLYVYKD--RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA 195 (323)
Q Consensus 118 ~~~~~~~~~~QLy~~~d--~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (323)
.+..+.+..+.+....+ .+.+.+++++++++|+++|.|+--++..
T Consensus 118 ~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q--------------------------------- 164 (309)
T PF01207_consen 118 RKAVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQ--------------------------------- 164 (309)
T ss_dssp HHH-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTC---------------------------------
T ss_pred hcccccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhh---------------------------------
Confidence 33344566666655555 6778899999999999998887432221
Q ss_pred cchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEec-cCCHHHHHHHHHc-CCCEEEEc
Q 020636 196 NDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQA-GAAGIIVS 253 (323)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~-Gad~i~vs 253 (323)
......+|+.++++++.+++||+.-| +.+.+|++...+. |+|+|.+.
T Consensus 165 -----------~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMig 213 (309)
T PF01207_consen 165 -----------RYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMIG 213 (309)
T ss_dssp -----------CCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEES
T ss_pred -----------cCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEEc
Confidence 01123579999999999999998885 7899999998865 99999883
No 306
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=96.40 E-value=0.063 Score=49.96 Aligned_cols=155 Identities=25% Similarity=0.246 Sum_probs=88.8
Q ss_pred ccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCC-------------CC----HHHHHhcCCCceeEEeeecC
Q 020636 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST-------------SS----VEEVASTGPGIRFFQLYVYK 133 (323)
Q Consensus 71 ~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~-------------~~----~eei~~~~~~~~~~QLy~~~ 133 (323)
..|++++ +.+. .++.=...++.+.++|+.++-=+++. .. ++++++...-+.++.+-...
T Consensus 98 ~~pvi~s-i~g~---~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~ 173 (289)
T cd02810 98 GQPLIAS-VGGS---SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF 173 (289)
T ss_pred CCeEEEE-eccC---CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC
Confidence 4676665 3332 33333577888888887655211111 01 22233333346788876666
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccC
Q 020636 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (323)
Q Consensus 134 d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (323)
+.+.+.++++.++++|++++.++-.... +..+... ..+.. . ...+. -++. . .....
T Consensus 174 ~~~~~~~~a~~l~~~Gad~i~~~~~~~~---~~~~~~~--~~~~~---~----~~~~g-----~sg~--~-----~~~~~ 229 (289)
T cd02810 174 DLEDIVELAKAAERAGADGLTAINTISG---RVVDLKT--VGPGP---K----RGTGG-----LSGA--P-----IRPLA 229 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcccCc---cceeccc--Ccccc---C----CCCCc-----cCcH--H-----HHHHH
Confidence 6667888999999999999987632111 0000000 00000 0 00000 0000 0 01235
Q ss_pred HHHHHHHHHhc--CCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 214 WKDVKWLQTIT--KLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 214 ~~~i~~i~~~~--~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
++.++++++.+ ++||+.- ++.+.+++.+++.+|||.|.+.
T Consensus 230 ~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg 272 (289)
T cd02810 230 LRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVA 272 (289)
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEc
Confidence 77899999988 7888765 6789999999999999999874
No 307
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=96.40 E-value=0.049 Score=48.85 Aligned_cols=42 Identities=21% Similarity=0.392 Sum_probs=36.8
Q ss_pred cCHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 212 LSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
.+...++-|+++.++||+|- |+.++.+|..+.+.|+|+|-+.
T Consensus 169 ~n~~~l~iiie~a~VPviVDAGiG~pSdAa~aMElG~DaVL~N 211 (262)
T COG2022 169 QNPYNLEIIIEEADVPVIVDAGIGTPSDAAQAMELGADAVLLN 211 (262)
T ss_pred CCHHHHHHHHHhCCCCEEEeCCCCChhHHHHHHhcccceeehh
Confidence 35667888999999999998 8899999999999999999763
No 308
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.40 E-value=0.014 Score=58.08 Aligned_cols=251 Identities=19% Similarity=0.248 Sum_probs=136.3
Q ss_pred hhcccccccccc-cCCCCCccceeec-CcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHH---
Q 020636 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEE--- 116 (323)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~~d~~t~i~-g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~ee--- 116 (323)
.||++.|+|... ...+++|++|.+- +.+++.||+-|||... +|..++.+.++.|...++... .++|+
T Consensus 3 t~ddv~l~p~~~~~~~~~~~~~~~~~~~~~l~~p~~s~~mdtv------Te~ema~~ma~~gg~GvI~~n--~~~e~q~~ 74 (450)
T TIGR01302 3 TFDDVLLLPGFIDVEPDDVDLSTRITRNIKLNIPILSSPMDTV------TESRMAIAMAREGGIGVIHRN--MSIEEQAE 74 (450)
T ss_pred CccceEecccccccCccccccccccccccCcCCCeeecCCCcc------CHHHHHHHHHhcCCCceeecC--CCHHHHHH
Confidence 499999999865 3456889999886 7899999999998653 566788888888877777742 33433
Q ss_pred -HHhcC--CCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCC----CCCC-chHHHHhhccCCCCccccccccccc
Q 020636 117 -VASTG--PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT----PRLG-RREADIKNRFTLPPFLTLKNFQGLD 188 (323)
Q Consensus 117 -i~~~~--~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~----p~~g-~r~~d~~~~~~~~~~~~~~~~~~~~ 188 (323)
+.... .....-++..........+.++.+.+.++..+.|.=+. -..| ...+|+..... ....+..+...
T Consensus 75 ~V~~Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~--~~~~V~dvm~~- 151 (450)
T TIGR01302 75 QVKRVKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKD--KGKPVSEVMTR- 151 (450)
T ss_pred HHhhhccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhc--CCCCHHHhhCC-
Confidence 22221 11111111111122334455666677788777664322 1112 12344431100 00000000000
Q ss_pred cCCC--cc-ccchhhHHHHhhcc-------C------CccCHHHHHHHHHh------cCCCEEEecc-----CCHHHHHH
Q 020636 189 LGKM--DE-ANDSGLAAYVAGQI-------D------RSLSWKDVKWLQTI------TKLPILVKGV-----LTAEDARI 241 (323)
Q Consensus 189 ~~~~--~~-~~~~~~~~~~~~~~-------~------~~~~~~~i~~i~~~------~~~pv~vK~i-----~~~e~a~~ 241 (323)
.... .. ..-..+.+.+.... | .-.+.+++-+..+. -+.-++|.+. .+.+.++.
T Consensus 152 ~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~~~~~~~d~~g~l~V~aav~~~~~~~~r~~~ 231 (450)
T TIGR01302 152 EEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRKFPHASKDENGRLIVGAAVGTREFDKERAEA 231 (450)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcccCCcceEeCCCCEEEEEEecCchhHHHHHHH
Confidence 0000 00 00000000000000 0 01223332222111 1223444432 23577899
Q ss_pred HHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 242 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 242 ~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
+.++|+|.|.+....|+. ...++.++++++.++ ++||++ |+|-|.+++..++.+|||+|-+|
T Consensus 232 L~~aG~d~I~vd~a~g~~----~~~~~~i~~i~~~~~-~~~vi~-G~v~t~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 232 LVKAGVDVIVIDSSHGHS----IYVIDSIKEIKKTYP-DLDIIA-GNVATAEQAKALIDAGADGLRVG 293 (450)
T ss_pred HHHhCCCEEEEECCCCcH----hHHHHHHHHHHHhCC-CCCEEE-EeCCCHHHHHHHHHhCCCEEEEC
Confidence 999999999986533321 345677888887654 789998 99999999999999999999766
No 309
>PRK14057 epimerase; Provisional
Probab=96.36 E-value=0.11 Score=47.70 Aligned_cols=83 Identities=7% Similarity=0.024 Sum_probs=53.3
Q ss_pred CCHHHHHHHHHcCCCEEEE-c---CCCCCCCCCCcchHHHHHHHHHHhc---CCCeEEEecCCCCHHHHHHHHHcCCCEE
Q 020636 234 LTAEDARIAVQAGAAGIIV-S---NHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGI 306 (323)
Q Consensus 234 ~~~e~a~~~~~~Gad~i~v-s---~~gg~~~~~~~~~~~~l~~i~~~~~---~~~pvia~GGI~~~~di~kal~lGAd~V 306 (323)
...+..+..++. +|.|.+ + +.||.. .-+..++-+.++++... -++.|-+||||.. +-+.++.++|||.+
T Consensus 143 Tp~e~i~~~l~~-vD~VLvMtV~PGfgGQ~--Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~-~ti~~l~~aGad~~ 218 (254)
T PRK14057 143 TPLDVIIPILSD-VEVIQLLAVNPGYGSKM--RSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQ-DQLPSLIAQGIDRV 218 (254)
T ss_pred CCHHHHHHHHHh-CCEEEEEEECCCCCchh--ccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHCCCCEE
Confidence 455666655553 777654 2 222311 22344555555554432 1477999999975 46778889999999
Q ss_pred EEccccccCcchhh
Q 020636 307 FVSIMPCQCPLTEK 320 (323)
Q Consensus 307 ~iG~~~~~~~~~~~ 320 (323)
..|+.+++.+++++
T Consensus 219 V~GSalF~~~d~~~ 232 (254)
T PRK14057 219 VSGSALFRDDRLVE 232 (254)
T ss_pred EEChHhhCCCCHHH
Confidence 99999988766544
No 310
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=96.31 E-value=0.019 Score=57.90 Aligned_cols=252 Identities=17% Similarity=0.187 Sum_probs=134.9
Q ss_pred hhcccccccccc-cCCCCCccceeec-CcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 020636 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (323)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~~d~~t~i~-g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~ 119 (323)
.||++.|+|... ...+++|++|.+- ...++.||+.|||... .|..+|.+.+++|...+++. ..+.|+..+
T Consensus 23 tfddv~l~p~~~~~~~~~~~~~t~lt~~~~~~~Pivsa~M~~v------t~~~lA~Ama~aGGiGfI~~--~as~E~q~~ 94 (505)
T PLN02274 23 TYDDVIFHPGYIDFPADAVDLSTRLSRNIPLSIPCVSSPMDTV------TESDMAIAMAALGGIGIVHY--NNTAEEQAA 94 (505)
T ss_pred CccceEecccccCcCCcccccccccccccCcCCCEeccCCccc------chHHHHHHHHhCCCeEEEcC--CCCHHHHHH
Confidence 499999999865 3456788887775 3577899999999664 35689999999998777774 334444322
Q ss_pred ----cC--CCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCC----CCCC-chHHHHhhccCCCCccccccccccc
Q 020636 120 ----TG--PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT----PRLG-RREADIKNRFTLPPFLTLKNFQGLD 188 (323)
Q Consensus 120 ----~~--~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~----p~~g-~r~~d~~~~~~~~~~~~~~~~~~~~ 188 (323)
.. .....-....-.....+.+.++...+.++..+.|+=+. -..| ...+|++..-. + ...+..+....
T Consensus 95 ~Irkvk~~~~gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~~-~-~~~V~eIMt~~ 172 (505)
T PLN02274 95 IVRKAKSRRVGFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVND-R-ETKLSEVMTSD 172 (505)
T ss_pred HHHHhhcccccccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhccc-c-CCcHHHHhccC
Confidence 11 10010011111122233455666677888877764221 0112 23344431100 0 00000000000
Q ss_pred cC--CCc-cccchhhHHHHhhc-------cC------CccCHHHHHHHHHhc---------CCCEEEec---c--CCHHH
Q 020636 189 LG--KMD-EANDSGLAAYVAGQ-------ID------RSLSWKDVKWLQTIT---------KLPILVKG---V--LTAED 238 (323)
Q Consensus 189 ~~--~~~-~~~~~~~~~~~~~~-------~~------~~~~~~~i~~i~~~~---------~~pv~vK~---i--~~~e~ 238 (323)
.. ... ........+.+... .| .-++.+++....+.- ...+.|.. + ...|-
T Consensus 173 ~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~vgaavg~~~~~~~r 252 (505)
T PLN02274 173 DDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLLVGAAIGTRESDKER 252 (505)
T ss_pred CCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCcCccccccCCCCCEEEEEEEcCCccHHHH
Confidence 00 000 00000000000000 00 012344443333320 12344442 2 23577
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
++.+.++|+|.|.+....|+ ....++.++++++..+ +.+||+ |+|.|.+++..++.+|||+|.+|
T Consensus 253 ~~~l~~ag~d~i~iD~~~g~----~~~~~~~i~~ik~~~p-~~~vi~-g~v~t~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 253 LEHLVKAGVDVVVLDSSQGD----SIYQLEMIKYIKKTYP-ELDVIG-GNVVTMYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred HHHHHHcCCCEEEEeCCCCC----cHHHHHHHHHHHHhCC-CCcEEE-ecCCCHHHHHHHHHcCcCEEEEC
Confidence 89999999999999654332 1234678888887663 355554 89999999999999999999775
No 311
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=96.28 E-value=0.13 Score=48.99 Aligned_cols=187 Identities=17% Similarity=0.145 Sum_probs=101.6
Q ss_pred ccceEECcccccccCCcHHHHHHHHHHHHcCCcee---ecCCCCC------C--------HHHHHhcCCCceeEEeeecC
Q 020636 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT---LSSWSTS------S--------VEEVASTGPGIRFFQLYVYK 133 (323)
Q Consensus 71 ~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~---vs~~s~~------~--------~eei~~~~~~~~~~QLy~~~ 133 (323)
..|++++=+ + ..++.-..+++.+.++|+.++ +|..... . ++.+++...-|.++.|-+
T Consensus 99 ~~pvi~si~-g---~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p-- 172 (325)
T cd04739 99 SIPVIASLN-G---VSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSP-- 172 (325)
T ss_pred CCeEEEEeC-C---CCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCC--
Confidence 568887732 2 134334578888888886444 3211110 1 222333334678888854
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccC
Q 020636 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (323)
Q Consensus 134 d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (323)
+...+.++++.++++|+++++++=-.+.. .-|++. . .. .+.+.+ .+.. .....
T Consensus 173 ~~~~~~~~a~~l~~~Gadgi~~~nt~~~~---~id~~~-~------~~-----~~~~gl---SG~~---------~~~~a 225 (325)
T cd04739 173 FFSALAHMAKQLDAAGADGLVLFNRFYQP---DIDLET-L------EV-----VPNLLL---SSPA---------EIRLP 225 (325)
T ss_pred CccCHHHHHHHHHHcCCCeEEEEcCcCCC---Cccccc-c------ce-----ecCCCc---CCcc---------chhHH
Confidence 33346678888999999999875221110 011100 0 00 000000 0000 11234
Q ss_pred HHHHHHHHHhcCCCEE-EeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchH-HHHHHHHHHhcCCCeEEEecCCCC
Q 020636 214 WKDVKWLQTITKLPIL-VKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKATQGRIPVFLDGGVRR 291 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~-vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~-~~l~~i~~~~~~~~pvia~GGI~~ 291 (323)
++.+.++++..++||+ +.|+.+.+||.+.+.+|||.|.+...- +..++..+ +...++.+.+ -.-|+++
T Consensus 226 l~~v~~v~~~~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~---~~~gp~~~~~i~~~L~~~l-------~~~g~~~ 295 (325)
T cd04739 226 LRWIAILSGRVKASLAASGGVHDAEDVVKYLLAGADVVMTTSAL---LRHGPDYIGTLLAGLEAWM-------EEHGYES 295 (325)
T ss_pred HHHHHHHHcccCCCEEEECCCCCHHHHHHHHHcCCCeeEEehhh---hhcCchHHHHHHHHHHHHH-------HHcCCCC
Confidence 6778888888889987 557899999999999999999885210 11122222 2333443333 2356778
Q ss_pred HHHHHHHHH
Q 020636 292 GTDVFKALA 300 (323)
Q Consensus 292 ~~di~kal~ 300 (323)
-.|+.-.++
T Consensus 296 i~e~~G~~~ 304 (325)
T cd04739 296 VQQLRGSMS 304 (325)
T ss_pred HHHHhcccc
Confidence 777765433
No 312
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=96.23 E-value=0.018 Score=54.29 Aligned_cols=162 Identities=23% Similarity=0.315 Sum_probs=99.1
Q ss_pred ceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCcee-ec--CCC--------------------------CC
Q 020636 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LS--SWS--------------------------TS 112 (323)
Q Consensus 62 ~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~-vs--~~s--------------------------~~ 112 (323)
..+|.|++|++.+++.-=-+ .++ ..+.++....|.-++ ++ ... -.
T Consensus 74 ~~~i~~~~~~sRl~~Gtg~y---~s~---~~~~~a~~asg~e~vTva~rr~~~~~~~~~~~~~~~~~~~~~~lpNTag~~ 147 (326)
T PRK11840 74 SWTVAGKTFSSRLLVGTGKY---KDF---EETAAAVEASGAEIVTVAVRRVNVSDPGAPMLTDYIDPKKYTYLPNTAGCY 147 (326)
T ss_pred CeEECCEEEecceeEecCCC---CCH---HHHHHHHHHhCCCEEEEEEEeecCcCCCcchHHHhhhhcCCEECccCCCCC
Confidence 47789999999999875222 222 245555555665444 11 110 01
Q ss_pred CHHH------HHhcCCCceeEEeeecCChH----HHHHHHHHHHHc---CCcEEEEecCCCCCCchHHHHhhccCCCCcc
Q 020636 113 SVEE------VASTGPGIRFFQLYVYKDRN----VVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFL 179 (323)
Q Consensus 113 ~~ee------i~~~~~~~~~~QLy~~~d~~----~~~~~~~~a~~~---G~~al~itvd~p~~g~r~~d~~~~~~~~~~~ 179 (323)
+-+| +++...+..|+.|-+-.|+. ...+.+++++.. |+..+.++.|.|...+|..++.--.-+|
T Consensus 148 ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~~avmP--- 224 (326)
T PRK11840 148 TAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGAVAVMP--- 224 (326)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCCEEEee---
Confidence 2222 12222245799986644322 234566777776 9999899999998777766652110011
Q ss_pred ccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 180 TLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
+ ..++ |.+ .+-.+.+.|+.+++..++||++- |+.+++|+..+.+.|+|++-+.
T Consensus 225 -l-------~~pI--Gsg-----------~gv~~p~~i~~~~e~~~vpVivdAGIg~~sda~~AmelGadgVL~n 278 (326)
T PRK11840 225 -L-------GAPI--GSG-----------LGIQNPYTIRLIVEGATVPVLVDAGVGTASDAAVAMELGCDGVLMN 278 (326)
T ss_pred -c-------cccc--cCC-----------CCCCCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 0 0011 111 11125677888888888999888 8899999999999999999773
No 313
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=96.14 E-value=0.63 Score=43.43 Aligned_cols=190 Identities=15% Similarity=0.137 Sum_probs=107.0
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCceee-----cCCCCCCHHHHH-------hcCC--CceeEEeeecCChHH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-----SSWSTSSVEEVA-------STGP--GIRFFQLYVYKDRNV 137 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~v-----s~~s~~~~eei~-------~~~~--~~~~~QLy~~~d~~~ 137 (323)
.|.++.|+.-.+-.+.++-..+.+-+.+.|+-.++ |++.+.+.+|.. +..+ .+.+++... .+-+.
T Consensus 6 ~~~~~TPf~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~~~~~ 84 (292)
T PRK03170 6 ITALVTPFKEDGSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGS-NSTAE 84 (292)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCC-chHHH
Confidence 47788887655444555556788888888875543 334455655532 2222 345666642 35667
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHH
Q 020636 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (323)
Q Consensus 138 ~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (323)
..++++.++++|++++++.. |.... + ..+-..+..
T Consensus 85 ~i~~a~~a~~~G~d~v~~~p--P~~~~--------------------------~-----------------~~~~i~~~~ 119 (292)
T PRK03170 85 AIELTKFAEKAGADGALVVT--PYYNK--------------------------P-----------------TQEGLYQHF 119 (292)
T ss_pred HHHHHHHHHHcCCCEEEECC--CcCCC--------------------------C-----------------CHHHHHHHH
Confidence 77888899999999998752 32100 0 000112345
Q ss_pred HHHHHhcCCCEEEecc-------CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCC
Q 020636 218 KWLQTITKLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 218 ~~i~~~~~~pv~vK~i-------~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
+.+.+.+++|+++=.+ .+++..+++.+.+ .|+-- .+.. .++..+.++.+..+++..|+. |
T Consensus 120 ~~ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L~~~p--~v~gi------K~s~-~d~~~~~~~~~~~~~~~~v~~-G--- 186 (292)
T PRK03170 120 KAIAEATDLPIILYNVPGRTGVDILPETVARLAEHP--NIVGI------KEAT-GDLERVSELIELVPDDFAVYS-G--- 186 (292)
T ss_pred HHHHhcCCCCEEEEECccccCCCCCHHHHHHHHcCC--CEEEE------EECC-CCHHHHHHHHHhCCCCeEEEE-C---
Confidence 5566667788876632 5677777775432 22210 1111 134444455544443444443 3
Q ss_pred CHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 291 RGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
....++..+.+|+++++-|..-+....+.+
T Consensus 187 ~d~~~~~~l~~G~~G~is~~~n~~P~~~~~ 216 (292)
T PRK03170 187 DDALALPFLALGGVGVISVAANVAPKEMAE 216 (292)
T ss_pred ChHhHHHHHHcCCCEEEEhHHhhhHHHHHH
Confidence 233467778999999998876554444433
No 314
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=96.14 E-value=0.093 Score=48.28 Aligned_cols=41 Identities=37% Similarity=0.540 Sum_probs=36.2
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
..+.++++|+.++.|+++. |+.++++++.+.++|||++++.
T Consensus 186 ~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 186 LNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVG 227 (256)
T ss_pred HHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 4667999999888999998 4678999999999999999984
No 315
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=96.13 E-value=0.025 Score=54.29 Aligned_cols=68 Identities=22% Similarity=0.280 Sum_probs=51.7
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
.+-+..+.++|+|.|++...-|+ .....+.++++++..+ ++|||+ |.|-|.+-+...+..|||+|-+|
T Consensus 110 ~er~~~L~~agvD~ivID~a~g~----s~~~~~~ik~ik~~~~-~~~via-GNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 110 FERAEALVEAGVDVIVIDSAHGH----SEHVIDMIKKIKKKFP-DVPVIA-GNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp HHHHHHHHHTT-SEEEEE-SSTT----SHHHHHHHHHHHHHST-TSEEEE-EEE-SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHHHcCCCEEEccccCcc----HHHHHHHHHHHHHhCC-CceEEe-cccCCHHHHHHHHHcCCCEEEEe
Confidence 57788999999999999643232 1334577888888775 789986 88999999999999999999998
No 316
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=96.12 E-value=0.25 Score=46.18 Aligned_cols=153 Identities=24% Similarity=0.307 Sum_probs=86.0
Q ss_pred ccceEECcccccccCCcHHHHHHHHHHHHcCCcee-ecCCC---C-------CC-------HHHHHhcCCCceeEEeeec
Q 020636 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LSSWS---T-------SS-------VEEVASTGPGIRFFQLYVY 132 (323)
Q Consensus 71 ~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~-vs~~s---~-------~~-------~eei~~~~~~~~~~QLy~~ 132 (323)
..|++++=++. .++.=...|+.+.++|..++ ++-.+ . .+ ++.+++...-|.++.+-+
T Consensus 89 ~~p~ivsi~g~----~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~- 163 (296)
T cd04740 89 GTPVIASIAGS----TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTP- 163 (296)
T ss_pred CCcEEEEEecC----CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCC-
Confidence 46777664322 33333578888888887655 32110 0 11 222333334567877743
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCcc
Q 020636 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (323)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (323)
+.+...++++.++++|++++.+. ++-. |. .-+.+... | .+ . ...+ + ++.......
T Consensus 164 -~~~~~~~~a~~~~~~G~d~i~~~-nt~~-g~-~~~~~~~~--~-~~--~----~~~g--------g----~sg~~~~~~ 218 (296)
T cd04740 164 -NVTDIVEIARAAEEAGADGLTLI-NTLK-GM-AIDIETRK--P-IL--G----NVTG--------G----LSGPAIKPI 218 (296)
T ss_pred -CchhHHHHHHHHHHcCCCEEEEE-CCCc-cc-ccccccCc--e-ee--c----CCcc--------e----ecCcccchH
Confidence 44456778888999999988653 2211 10 00111000 0 00 0 0000 0 000011224
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
.++.++.+++.+++||+.- ++.+.+++..++++|||.|.+.
T Consensus 219 ~~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~GAd~V~ig 260 (296)
T cd04740 219 ALRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAGASAVQVG 260 (296)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 6788899999889998765 5789999999999999999874
No 317
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=96.10 E-value=0.41 Score=44.74 Aligned_cols=76 Identities=20% Similarity=0.284 Sum_probs=56.9
Q ss_pred CCHHHHHHHH-HcCCCEEEEcC---CCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC-HHHHHHHHHcCCCEEEE
Q 020636 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGIFV 308 (323)
Q Consensus 234 ~~~e~a~~~~-~~Gad~i~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~-~~di~kal~lGAd~V~i 308 (323)
.++++|+... +.|+|.+-++- ||-.. ....-.++.|.+|.+.+ ++|+..=||=.. -+++.|++.+|..-|=+
T Consensus 155 T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~-~~p~Ldfd~l~~I~~~~--~vPLVLHGgSG~~~e~~~kai~~GI~KiNi 231 (286)
T PRK12738 155 TDPQEAKRFVELTGVDSLAVAIGTAHGLYS-KTPKIDFQRLAEIREVV--DVPLVLHGASDVPDEFVRRTIELGVTKVNV 231 (286)
T ss_pred CCHHHHHHHHHHhCCCEEEeccCcccCCCC-CCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEe
Confidence 4688888776 58999999864 55332 11223678999999988 899998775444 46677899999999999
Q ss_pred cccc
Q 020636 309 SIMP 312 (323)
Q Consensus 309 G~~~ 312 (323)
+|-+
T Consensus 232 ~T~l 235 (286)
T PRK12738 232 ATEL 235 (286)
T ss_pred CcHH
Confidence 9865
No 318
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=96.10 E-value=0.35 Score=45.16 Aligned_cols=77 Identities=22% Similarity=0.245 Sum_probs=57.7
Q ss_pred CCHHHHHHHH-HcCCCEEEEcC---CCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH-HHHHHHHHcCCCEEEE
Q 020636 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFV 308 (323)
Q Consensus 234 ~~~e~a~~~~-~~Gad~i~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~-~di~kal~lGAd~V~i 308 (323)
.++++|+... +.|+|.+-++. ||-... ...-.++.|.+|.+.+ ++|+..=||=..+ +++.|++.+|..-|=+
T Consensus 155 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~-~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi 231 (284)
T PRK09195 155 TDPAQAREFVEATGIDSLAVAIGTAHGMYKG-EPKLDFDRLENIRQWV--NIPLVLHGASGLPTKDIQQTIKLGICKVNV 231 (284)
T ss_pred CCHHHHHHHHHHHCcCEEeeccCccccccCC-CCcCCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHHcCCeEEEe
Confidence 5788988777 48999999874 554321 1223678999999988 7999987754444 5677899999999999
Q ss_pred ccccc
Q 020636 309 SIMPC 313 (323)
Q Consensus 309 G~~~~ 313 (323)
+|-+.
T Consensus 232 ~T~l~ 236 (284)
T PRK09195 232 ATELK 236 (284)
T ss_pred CcHHH
Confidence 98664
No 319
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=96.07 E-value=0.058 Score=57.15 Aligned_cols=87 Identities=14% Similarity=0.097 Sum_probs=62.6
Q ss_pred ccCCHHHHHHHH----Hc---CCCEEEEcCCCCCC-CCCC--cchHHHHHHHHHHhcC-CCeEEEecCCCCHHHHHHHHH
Q 020636 232 GVLTAEDARIAV----QA---GAAGIIVSNHGARQ-LDYV--PATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALA 300 (323)
Q Consensus 232 ~i~~~e~a~~~~----~~---Gad~i~vs~~gg~~-~~~~--~~~~~~l~~i~~~~~~-~~pvia~GGI~~~~di~kal~ 300 (323)
-+.+.+++..+. .. |+|+|.++--..+. .... +..++.+.++.+.+.. .+||++-||| +.+++.++++
T Consensus 107 S~h~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~~~~~ 185 (755)
T PRK09517 107 TIETLDQLEAVIAQCAETGVALPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVAIGGV-GLRNAAELAA 185 (755)
T ss_pred eCCCHHHHHHHHhhhccCCCCCCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECCC-CHHHHHHHHH
Confidence 346777776542 23 59999986533222 1122 2356788888877721 2999999999 8899999999
Q ss_pred cCCCEEEEccccccCcchh
Q 020636 301 LGASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 301 lGAd~V~iG~~~~~~~~~~ 319 (323)
.||++|.+-+.++..++..
T Consensus 186 ~Ga~giAvisai~~a~d~~ 204 (755)
T PRK09517 186 TGIDGLCVVSAIMAAANPA 204 (755)
T ss_pred cCCCEEEEehHhhCCCCHH
Confidence 9999999999998776644
No 320
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=96.06 E-value=0.18 Score=45.22 Aligned_cols=123 Identities=17% Similarity=0.251 Sum_probs=77.6
Q ss_pred eecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccC
Q 020636 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (323)
Q Consensus 130 y~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (323)
|...+.+.+.+-++.++++|++++++.+-++ |
T Consensus 67 Y~~~E~~iM~~DI~~~~~lG~~GVV~G~lt~------------------------------------------------d 98 (241)
T COG3142 67 YSDDELEIMLEDIRLARELGVQGVVLGALTA------------------------------------------------D 98 (241)
T ss_pred cChHHHHHHHHHHHHHHHcCCCcEEEeeecC------------------------------------------------C
Confidence 4444456778888899999999998653221 2
Q ss_pred CccCHHHHHHHHHhc-CCCEEEec----cCCHHH-HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeE
Q 020636 210 RSLSWKDVKWLQTIT-KLPILVKG----VLTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~-~~pv~vK~----i~~~e~-a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
..++.+.++.+.+.. ++++.+.- +.++.+ .+.+.+.|+..|-.|+ |. ....-.++.|.++.+..++++.|
T Consensus 99 g~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~Gv~RILTsG--g~--~sa~eg~~~l~~li~~a~gri~I 174 (241)
T COG3142 99 GNIDMPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIELGVERILTSG--GK--ASALEGLDLLKRLIEQAKGRIII 174 (241)
T ss_pred CccCHHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHCCCcEEecCC--Cc--CchhhhHHHHHHHHHHhcCCEEE
Confidence 234455666666654 56676663 344544 5788899999997754 43 22233455666666666678888
Q ss_pred EEecCCCCHHHHHHHHHcCCC
Q 020636 284 FLDGGVRRGTDVFKALALGAS 304 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lGAd 304 (323)
++-|||+...=..-....|+.
T Consensus 175 m~GaGV~~~N~~~l~~~tg~~ 195 (241)
T COG3142 175 MAGAGVRAENIAELVLLTGVT 195 (241)
T ss_pred EeCCCCCHHHHHHHHHhcCch
Confidence 888888754433333556754
No 321
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=96.03 E-value=0.36 Score=45.50 Aligned_cols=128 Identities=14% Similarity=0.176 Sum_probs=86.8
Q ss_pred eEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHh
Q 020636 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (323)
Q Consensus 126 ~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (323)
.+++. ..+++.+.+.++++.+.|++++-+.++..
T Consensus 127 ~~~~~-~~~~~~~~~~~~~~~~~Gf~~iKik~g~~--------------------------------------------- 160 (316)
T cd03319 127 DYTIS-IDTPEAMAAAAKKAAKRGFPLLKIKLGGD--------------------------------------------- 160 (316)
T ss_pred EEEEe-CCCHHHHHHHHHHHHHcCCCEEEEEeCCC---------------------------------------------
Confidence 34553 35677777777777788999988765321
Q ss_pred hccCCccCHHHHHHHHHhcC-CCEEEecc--CCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhc
Q 020636 206 GQIDRSLSWKDVKWLQTITK-LPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ 278 (323)
Q Consensus 206 ~~~~~~~~~~~i~~i~~~~~-~pv~vK~i--~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~ 278 (323)
++...+.++.+|+.++ .++.++.- .+.++| +.+.+.+++.|.- . ..+..++.++++.+.+
T Consensus 161 ----~~~d~~~v~~lr~~~g~~~l~vD~n~~~~~~~A~~~~~~l~~~~l~~iEe-------P-~~~~d~~~~~~L~~~~- 227 (316)
T cd03319 161 ----LEDDIERIRAIREAAPDARLRVDANQGWTPEEAVELLRELAELGVELIEQ-------P-VPAGDDDGLAYLRDKS- 227 (316)
T ss_pred ----hhhHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHHhcCCCEEEC-------C-CCCCCHHHHHHHHhcC-
Confidence 1123556778887764 56666642 445554 4445667777631 1 1134577788888876
Q ss_pred CCCeEEEecCCCCHHHHHHHHHc-CCCEEEEccccc
Q 020636 279 GRIPVFLDGGVRRGTDVFKALAL-GASGIFVSIMPC 313 (323)
Q Consensus 279 ~~~pvia~GGI~~~~di~kal~l-GAd~V~iG~~~~ 313 (323)
++||++++.+.+..|+.+++.. ++|.|++--..+
T Consensus 228 -~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~ 262 (316)
T cd03319 228 -PLPIMADESCFSAADAARLAGGGAYDGINIKLMKT 262 (316)
T ss_pred -CCCEEEeCCCCCHHHHHHHHhcCCCCEEEEecccc
Confidence 7999999999999999999996 489998865444
No 322
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=96.02 E-value=0.7 Score=42.70 Aligned_cols=187 Identities=18% Similarity=0.165 Sum_probs=109.1
Q ss_pred ceEECcccccccCCcHHHHHHHHHHHHcCCceee--c---CCCCCCHHHHH-------hcCC--CceeEEeeecCChHHH
Q 020636 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------STGP--GIRFFQLYVYKDRNVV 138 (323)
Q Consensus 73 Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~s~~~~eei~-------~~~~--~~~~~QLy~~~d~~~~ 138 (323)
|.++.|+.-.+-.+.++-..+.+-+.+.|+..++ + ++.+.+.+|.. +... -+.+++.-. .+.+..
T Consensus 3 ~a~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~~ 81 (281)
T cd00408 3 PALVTPFTADGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGA-NSTREA 81 (281)
T ss_pred CCeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCC-ccHHHH
Confidence 5677787555445555666888888888875543 2 23345555532 2222 345566532 345567
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHH
Q 020636 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (323)
Q Consensus 139 ~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 218 (323)
.++.+.++++|++++.+.- |... + + ..+-..+..+
T Consensus 82 i~~a~~a~~~Gad~v~v~p--P~y~------------~--------------~-----------------~~~~~~~~~~ 116 (281)
T cd00408 82 IELARHAEEAGADGVLVVP--PYYN------------K--------------P-----------------SQEGIVAHFK 116 (281)
T ss_pred HHHHHHHHHcCCCEEEECC--CcCC------------C--------------C-----------------CHHHHHHHHH
Confidence 7788899999999998742 2210 0 0 0011233456
Q ss_pred HHHHhcCCCEEEecc-------CCHHHHHHHHHcC-CCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCC
Q 020636 219 WLQTITKLPILVKGV-------LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 219 ~i~~~~~~pv~vK~i-------~~~e~a~~~~~~G-ad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
.+.+..++|+++-.. .+++..+++.+.. +-+|.-+ . .+...+.++.+..++++.|+. |.
T Consensus 117 ~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~~~~v~giK~s---------~-~d~~~~~~~~~~~~~~~~v~~-G~-- 183 (281)
T cd00408 117 AVADASDLPVILYNIPGRTGVDLSPETIARLAEHPNIVGIKDS---------S-GDLDRLTRLIALLGPDFAVLS-GD-- 183 (281)
T ss_pred HHHhcCCCCEEEEECccccCCCCCHHHHHHHhcCCCEEEEEeC---------C-CCHHHHHHHHHhcCCCeEEEE-cc--
Confidence 666667899987632 5788888887622 2222221 1 344555566555544444443 42
Q ss_pred CHHHHHHHHHcCCCEEEEccccccCcchh
Q 020636 291 RGTDVFKALALGASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~iG~~~~~~~~~~ 319 (323)
...+...+.+|+++.+.|..-+....+.
T Consensus 184 -d~~~~~~l~~G~~G~i~~~~n~~p~~~~ 211 (281)
T cd00408 184 -DDLLLPALALGADGAISGAANVAPKLAV 211 (281)
T ss_pred -hHHHHHHHHcCCCEEEehHHhhCHHHHH
Confidence 5677888999999999887555444443
No 323
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=95.97 E-value=0.11 Score=49.17 Aligned_cols=88 Identities=8% Similarity=0.206 Sum_probs=61.6
Q ss_pred CceeEEeeecC-ChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhH
Q 020636 123 GIRFFQLYVYK-DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 201 (323)
Q Consensus 123 ~~~~~QLy~~~-d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (323)
-+.++.+.... +.+...++++.++++|++.|.|+-.+.. +++
T Consensus 134 ~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~---------~~y---------------------------- 176 (312)
T PRK10550 134 LPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKE---------DGY---------------------------- 176 (312)
T ss_pred cceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCc---------cCC----------------------------
Confidence 46777765432 3344678888899999998877622110 011
Q ss_pred HHHhhccCCccCHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHH-HcCCCEEEEc
Q 020636 202 AYVAGQIDRSLSWKDVKWLQTITKLPILVK-GVLTAEDARIAV-QAGAAGIIVS 253 (323)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~-~~Gad~i~vs 253 (323)
.-+...|+.++++++.+++||+.- ++.++++++.++ ..|||+|.+.
T Consensus 177 ------~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiG 224 (312)
T PRK10550 177 ------RAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIG 224 (312)
T ss_pred ------CCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEc
Confidence 012246899999999999998776 478999999987 5899999883
No 324
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.96 E-value=0.047 Score=49.12 Aligned_cols=80 Identities=16% Similarity=0.108 Sum_probs=54.9
Q ss_pred HHHHHHHHHhc----C-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecC
Q 020636 214 WKDVKWLQTIT----K-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (323)
Q Consensus 214 ~~~i~~i~~~~----~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GG 288 (323)
.+.|+.+++.+ + +-|-+..|.+.++++.+.++|++.++--+ .+.+++....+ . ++|++ =|
T Consensus 54 ~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiVsP~----------~~~~v~~~~~~-~--~i~~i--PG 118 (222)
T PRK07114 54 HEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIVTPL----------FNPDIAKVCNR-R--KVPYS--PG 118 (222)
T ss_pred HHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHHH-c--CCCEe--CC
Confidence 45566665433 2 33444468999999999999999986421 12234433332 2 45554 58
Q ss_pred CCCHHHHHHHHHcCCCEEEE
Q 020636 289 VRRGTDVFKALALGASGIFV 308 (323)
Q Consensus 289 I~~~~di~kal~lGAd~V~i 308 (323)
+.|+.++..|+.+||+.|=+
T Consensus 119 ~~TpsEi~~A~~~Ga~~vKl 138 (222)
T PRK07114 119 CGSLSEIGYAEELGCEIVKL 138 (222)
T ss_pred CCCHHHHHHHHHCCCCEEEE
Confidence 99999999999999999866
No 325
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=95.94 E-value=0.61 Score=43.41 Aligned_cols=77 Identities=25% Similarity=0.328 Sum_probs=59.2
Q ss_pred CCHHHHHHHHH-cCCCEEEEcC---CCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH-HHHHHHHcCCCEEEE
Q 020636 234 LTAEDARIAVQ-AGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGIFV 308 (323)
Q Consensus 234 ~~~e~a~~~~~-~Gad~i~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~-di~kal~lGAd~V~i 308 (323)
.++++|+...+ .|+|.+.++. ||........-.++.|.+|.+.+ ++|+..=||=..+. ++.+++..|..-|=+
T Consensus 148 T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi 225 (276)
T cd00947 148 TDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERV--NVPLVLHGGSGIPDEQIRKAIKLGVCKINI 225 (276)
T ss_pred CCHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEe
Confidence 56888887775 7999999874 45332101223678999999998 89999999888875 488899999999999
Q ss_pred cccc
Q 020636 309 SIMP 312 (323)
Q Consensus 309 G~~~ 312 (323)
+|.+
T Consensus 226 ~T~l 229 (276)
T cd00947 226 NTDL 229 (276)
T ss_pred ChHH
Confidence 8865
No 326
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.91 E-value=0.039 Score=55.27 Aligned_cols=247 Identities=15% Similarity=0.173 Sum_probs=131.8
Q ss_pred hhccccccccccc-CC-CCCccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 020636 42 AFSRILFRPRILI-DV-SKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (323)
Q Consensus 42 ~~~~i~l~pr~l~-~~-~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~ 119 (323)
.||++.|+|.... .. +++|++|+ .++.++.||+-|||-.. +|..+|.+.++.|...++... .+.++..+
T Consensus 14 tfddvll~p~~~~~~~~~~v~~~t~-~~~~l~~Pi~sa~Mdtv------t~~~MAiaLAr~GGiGvih~n--l~~~~q~~ 84 (479)
T PRK07807 14 TYDDVFLVPSRSDVGSRFDVDLSTA-DGTGTTIPLVVANMTAV------AGRRMAETVARRGGLVVLPQD--IPIDVVAE 84 (479)
T ss_pred CccceEecccccCccCCCceecccC-CCCccccceeecCCcch------hHHHHHHHHHHCCCceEeeCC--CCHHHHHH
Confidence 5999999998763 34 48899997 48899999999998553 577899999999987777742 33333222
Q ss_pred c---CC-Ccee-EEeeecCChHHHHHHHHHHHHcCCcEEEEecCCC-CCC-chHHHHhhccCCCCccccccccccccCCC
Q 020636 120 T---GP-GIRF-FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP-RLG-RREADIKNRFTLPPFLTLKNFQGLDLGKM 192 (323)
Q Consensus 120 ~---~~-~~~~-~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p-~~g-~r~~d~~~~~~~~~~~~~~~~~~~~~~~~ 192 (323)
. .. .... -+...-.....+.+.++...+.++..+.|+-+.- ..| ...+|++.. +.... +.+....+.
T Consensus 85 ~l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~---~~~~~---V~diMt~~~ 158 (479)
T PRK07807 85 VVAWVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGV---DRFTQ---VRDVMSTDL 158 (479)
T ss_pred HHhhcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcC---ccCCC---HHHhccCCc
Confidence 1 11 0000 0000111222344556666677777766532210 012 123444320 00000 000000000
Q ss_pred ccc-cchhhHH---HHhhc-------cC------CccCHHHHHHHHHhcC-----CCEEEe---cc--CCHHHHHHHHHc
Q 020636 193 DEA-NDSGLAA---YVAGQ-------ID------RSLSWKDVKWLQTITK-----LPILVK---GV--LTAEDARIAVQA 245 (323)
Q Consensus 193 ~~~-~~~~~~~---~~~~~-------~~------~~~~~~~i~~i~~~~~-----~pv~vK---~i--~~~e~a~~~~~~ 245 (323)
... ....+.+ .+... .| .-++..+|......-. .-+.+. ++ ...+.++.+.+.
T Consensus 159 itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~~~~~~g~l~V~aav~~~~~~~~~a~~Lv~a 238 (479)
T PRK07807 159 VTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTPAVDAAGRLRVAAAVGINGDVAAKARALLEA 238 (479)
T ss_pred eEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCchhhhhhccchHhhhccChhHHHHHHHHHHh
Confidence 000 0000000 00000 00 0012333322221100 001111 11 224668889999
Q ss_pred CCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 246 GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 246 Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
|+|.|++....|. +...++.+++|++..+ +++||+ |.|.|.+.+..++.+|||+|-+|
T Consensus 239 Gvd~i~~D~a~~~----~~~~~~~i~~ik~~~p-~~~v~a-gnv~t~~~a~~l~~aGad~v~vg 296 (479)
T PRK07807 239 GVDVLVVDTAHGH----QEKMLEALRAVRALDP-GVPIVA-GNVVTAEGTRDLVEAGADIVKVG 296 (479)
T ss_pred CCCEEEEeccCCc----cHHHHHHHHHHHHHCC-CCeEEe-eccCCHHHHHHHHHcCCCEEEEC
Confidence 9999998653332 3456788999988775 577776 99999999999999999998754
No 327
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.90 E-value=0.038 Score=55.67 Aligned_cols=254 Identities=18% Similarity=0.149 Sum_probs=129.0
Q ss_pred Hhhccccccccccc---CCCCCccceeec--------CcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCC
Q 020636 41 NAFSRILFRPRILI---DVSKIDMNTTVL--------GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW 109 (323)
Q Consensus 41 ~~~~~i~l~pr~l~---~~~~~d~~t~i~--------g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~ 109 (323)
..||++.|+|.... ..+++|++|.+- +.++..|+.-|+|... .+-+||.+..+.|...++...
T Consensus 10 ~tfddvll~P~~~~~~~~~~~v~~~t~~~~~~~~~~~~i~l~iP~~Satmdtv------tgdalAiala~~gG~g~Ih~n 83 (502)
T PRK07107 10 RTFSEYLLVPGLSSKECVPANVSLKTPLVKFKKGEESAITLNIPLVSAIMQSV------SDDNMAIALAREGGLSFIFGS 83 (502)
T ss_pred ccccceEEccCCCCCCcCccceeccccccccccCcccccccCCChHHHHHHHH------hhHHHHHHHHHcCCCeEeeCC
Confidence 35999999998763 457889988875 4678889999988653 355899999998877776643
Q ss_pred CCCCHHHHHhc----C--CCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCC----CCCC-chHHHHhhccCCCCc
Q 020636 110 STSSVEEVAST----G--PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT----PRLG-RREADIKNRFTLPPF 178 (323)
Q Consensus 110 s~~~~eei~~~----~--~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~----p~~g-~r~~d~~~~~~~~~~ 178 (323)
.++|+-++. . ........+.-.....+.+.++...+.+...+.|.=+. -..| ...+|++.....+ .
T Consensus 84 --~sie~qa~lV~kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~~~-~ 160 (502)
T PRK07107 84 --QSIESEAAMVRRVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMSL-D 160 (502)
T ss_pred --CCHHHHHHHHHHHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccccCC-C
Confidence 334442211 1 01000111111122334455666666677666554220 1112 1234443110000 0
Q ss_pred cccccccccccCCCcc-ccchhhHH---HHhhc-------cC------CccCHHHHHHHH-------HhcCCCEEEeccC
Q 020636 179 LTLKNFQGLDLGKMDE-ANDSGLAA---YVAGQ-------ID------RSLSWKDVKWLQ-------TITKLPILVKGVL 234 (323)
Q Consensus 179 ~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~-------~~------~~~~~~~i~~i~-------~~~~~pv~vK~i~ 234 (323)
..+..+.... .+... .....+.+ .+... .| .-++++++...+ +..+-.++...+.
T Consensus 161 ~~V~dIMt~~-~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~~~P~a~~d~~grL~V~~av~ 239 (502)
T PRK07107 161 TKVKDFMTPF-EKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHKENPLELLDSSKRYVVGAGIN 239 (502)
T ss_pred CCHHHHhCCC-CCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcccChhhhhhhccCeeeeeccC
Confidence 0000000000 00000 00000000 00000 00 012233332221 1111112222332
Q ss_pred C---HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 235 T---AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 235 ~---~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
. .+-++.+.++|+|.|++.+.-|. ....++.++++++..+++++ +..|.|-+.+++..++.+|||++.+|
T Consensus 240 ~~~~~~ra~~Lv~aGvd~i~vd~a~g~----~~~~~~~i~~ir~~~~~~~~-V~aGnV~t~e~a~~li~aGAd~I~vg 312 (502)
T PRK07107 240 TRDYAERVPALVEAGADVLCIDSSEGY----SEWQKRTLDWIREKYGDSVK-VGAGNVVDREGFRYLAEAGADFVKVG 312 (502)
T ss_pred hhhHHHHHHHHHHhCCCeEeecCcccc----cHHHHHHHHHHHHhCCCCce-EEeccccCHHHHHHHHHcCCCEEEEC
Confidence 2 35578899999999998543221 12236778888877643344 44599999999999999999999884
No 328
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.90 E-value=0.073 Score=47.61 Aligned_cols=81 Identities=21% Similarity=0.259 Sum_probs=59.5
Q ss_pred CHHHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 020636 213 SWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (323)
Q Consensus 213 ~~~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~ 291 (323)
..+.|+.+++.++ .-|....+.+.++++.+.++|++.++.-+ .+.+.+..+.+ . .+|++ =|+.|
T Consensus 53 ~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~----------~~~~vi~~a~~-~--~i~~i--PG~~T 117 (212)
T PRK05718 53 ALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPG----------LTPPLLKAAQE-G--PIPLI--PGVST 117 (212)
T ss_pred HHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHHH-c--CCCEe--CCCCC
Confidence 3556888988875 33445567999999999999999997632 12245544443 2 45544 47999
Q ss_pred HHHHHHHHHcCCCEEEE
Q 020636 292 GTDVFKALALGASGIFV 308 (323)
Q Consensus 292 ~~di~kal~lGAd~V~i 308 (323)
+.++.+++.+||+.|-+
T Consensus 118 ptEi~~a~~~Ga~~vKl 134 (212)
T PRK05718 118 PSELMLGMELGLRTFKF 134 (212)
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 99999999999999987
No 329
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=95.87 E-value=0.082 Score=50.33 Aligned_cols=42 Identities=26% Similarity=0.642 Sum_probs=36.9
Q ss_pred cCHHHHHHHHHhcC-CCEEEec-cCCHHHHHHHHH-cCCCEEEEc
Q 020636 212 LSWKDVKWLQTITK-LPILVKG-VLTAEDARIAVQ-AGAAGIIVS 253 (323)
Q Consensus 212 ~~~~~i~~i~~~~~-~pv~vK~-i~~~e~a~~~~~-~Gad~i~vs 253 (323)
..|+.|+++++.++ +||+.-| |.+.++|+..++ .|+|+|.+.
T Consensus 184 ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMig 228 (323)
T COG0042 184 ADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIG 228 (323)
T ss_pred cCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEc
Confidence 68999999999998 9998885 689999998887 679999883
No 330
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=95.86 E-value=0.75 Score=40.98 Aligned_cols=103 Identities=17% Similarity=0.155 Sum_probs=67.6
Q ss_pred CCccCHHHHHHHHHhcCCCEEEeccCCH---HHHHHHHHcCCCEEEEcCCCCCC--CCCCcchHHHHHHHHHHhcCCCeE
Q 020636 209 DRSLSWKDVKWLQTITKLPILVKGVLTA---EDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 209 ~~~~~~~~i~~i~~~~~~pv~vK~i~~~---e~a~~~~~~Gad~i~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
+.+.+.+.++.+++..+.|++--..... .........-+|.+.+..+...+ ..+..-+|+.++.. .. ..|+
T Consensus 82 HG~e~~~~~~~l~~~~~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~--~~--~~~~ 157 (208)
T COG0135 82 HGDEDPEYIDQLKEELGVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGTGQTFDWNLLPKL--RL--SKPV 157 (208)
T ss_pred CCCCCHHHHHHHHhhcCCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCCCcEECHHHhccc--cc--cCCE
Confidence 3445678899999887777654433221 23445556678999887642111 11233466666654 22 6789
Q ss_pred EEecCCCCHHHHHHHHHcCC-CEEEEccccccCc
Q 020636 284 FLDGGVRRGTDVFKALALGA-SGIFVSIMPCQCP 316 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lGA-d~V~iG~~~~~~~ 316 (323)
+.+||+ +++.+.+|++++. .+|=+-+..=..|
T Consensus 158 ~LAGGL-~p~NV~~ai~~~~p~gvDvSSGVE~~p 190 (208)
T COG0135 158 MLAGGL-NPDNVAEAIALGPPYGVDVSSGVESSP 190 (208)
T ss_pred EEECCC-CHHHHHHHHHhcCCceEEeccccccCC
Confidence 999998 6899999999987 8887776654444
No 331
>PLN02417 dihydrodipicolinate synthase
Probab=95.85 E-value=0.074 Score=49.52 Aligned_cols=83 Identities=18% Similarity=0.222 Sum_probs=56.5
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~~ 313 (323)
++.+.+.|+++|.+.++.|....-.. --.+++..+.+.+.+++||++.=|-.+..|+++ |-++|||+|++-.+..
T Consensus 28 i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P~y 107 (280)
T PLN02417 28 VNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY 107 (280)
T ss_pred HHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCCcc
Confidence 45567899999999887664221111 122355556666677899998666666677665 3458999999999887
Q ss_pred cCcchhhh
Q 020636 314 QCPLTEKI 321 (323)
Q Consensus 314 ~~~~~~~~ 321 (323)
..|..+.+
T Consensus 108 ~~~~~~~i 115 (280)
T PLN02417 108 GKTSQEGL 115 (280)
T ss_pred CCCCHHHH
Confidence 77655544
No 332
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=95.81 E-value=0.34 Score=43.21 Aligned_cols=42 Identities=19% Similarity=0.590 Sum_probs=35.9
Q ss_pred cCHHHHHHHHHhcCCCEEEec-cCCHHHHHHHHHc-CCCEEEEc
Q 020636 212 LSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQA-GAAGIIVS 253 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~-Gad~i~vs 253 (323)
..|+.++.+++..++||+.-| +.+.+++..+++. |+|+|.+.
T Consensus 170 ~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~ig 213 (231)
T cd02801 170 ADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIG 213 (231)
T ss_pred CCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEc
Confidence 468889999998899988864 6899999999987 89999873
No 333
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=95.80 E-value=1 Score=42.17 Aligned_cols=189 Identities=14% Similarity=0.113 Sum_probs=107.2
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCceee-----cCCCCCCHHHHHh-------cCC--CceeEEeeecCChHH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-----SSWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~v-----s~~s~~~~eei~~-------~~~--~~~~~QLy~~~d~~~ 137 (323)
.|.++.|+.-.+-.+.++=..+.+-..+.|+-.++ |++.+.+.+|..+ ... -+.+.+... .+.+.
T Consensus 5 ~~a~~TPf~~dg~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~-~~t~~ 83 (294)
T TIGR02313 5 IAPLITPFKRNGDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGA-LNHDE 83 (294)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCc-chHHH
Confidence 57788888654434555555777777788864432 3344556666322 222 344555542 35556
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHH
Q 020636 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (323)
Q Consensus 138 ~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (323)
..++.+.+++.|++++.+.- |.. + + + +.+-..+..
T Consensus 84 ai~~a~~A~~~Gad~v~v~p--P~y----------~--~--------------~-----------------~~~~l~~~f 118 (294)
T TIGR02313 84 TLELTKFAEEAGADAAMVIV--PYY----------N--K--------------P-----------------NQEALYDHF 118 (294)
T ss_pred HHHHHHHHHHcCCCEEEEcC--ccC----------C--C--------------C-----------------CHHHHHHHH
Confidence 66788889999999998652 331 0 0 0 000113345
Q ss_pred HHHHHhc-CCCEEEecc-------CCHHHHHHHHH-c-CCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEec
Q 020636 218 KWLQTIT-KLPILVKGV-------LTAEDARIAVQ-A-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287 (323)
Q Consensus 218 ~~i~~~~-~~pv~vK~i-------~~~e~a~~~~~-~-Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~G 287 (323)
+.+.+.+ ++||++=.+ .+++...++.+ . .+-+|.-+. .++..+.++....+.+..|+. |
T Consensus 119 ~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~~~~pnv~giK~ss----------~d~~~~~~~~~~~~~~~~v~~-G 187 (294)
T TIGR02313 119 AEVADAVPDFPIIIYNIPGRAAQEIAPKTMARLRKDCPNIVGAKESN----------KDFEHLNHLFLEAGRDFLLFC-G 187 (294)
T ss_pred HHHHHhccCCCEEEEeCchhcCcCCCHHHHHHHHhhCCCEEEEEeCC----------CCHHHHHHHHHhcCCCeEEEE-c
Confidence 6677777 788887643 46777777764 2 233333221 134444555544443444433 3
Q ss_pred CCCCHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 288 GVRRGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 288 GI~~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
.-..++.++.+||++++.|..-+....+.+
T Consensus 188 ---~d~~~~~~l~~Ga~G~is~~~n~~P~~~~~ 217 (294)
T TIGR02313 188 ---IELLCLPMLAIGAAGSIAATANVEPKEVAE 217 (294)
T ss_pred ---chHHHHHHHHCCCCEEEecHHhhCHHHHHH
Confidence 225566788999999998876555444433
No 334
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=95.80 E-value=0.094 Score=49.82 Aligned_cols=68 Identities=18% Similarity=0.064 Sum_probs=51.5
Q ss_pred HHHHHHHHHcC--CCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 236 AEDARIAVQAG--AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 236 ~e~a~~~~~~G--ad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
.+-+..+.++| +|.|++...-|+ ....++.++.+++..+ -+.+..|.|-|++++..++.+|||+|-+|
T Consensus 109 ~er~~~L~~a~~~~d~iviD~AhGh----s~~~i~~ik~ir~~~p--~~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 109 LEKMTSILEAVPQLKFICLDVANGY----SEHFVEFVKLVREAFP--EHTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCc----HHHHHHHHHHHHhhCC--CCeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 45578888885 999998653332 1345677888887764 35666688999999999999999999776
No 335
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=95.77 E-value=0.062 Score=49.45 Aligned_cols=167 Identities=22% Similarity=0.266 Sum_probs=87.9
Q ss_pred cCcccccceEECcc-------cccccCCcHHHHHHHHHHHHc--CCceeecCCCC----CCHHHHH-hcCC-CceeEEee
Q 020636 66 LGFKISMPIMIAPT-------AMQKMAHPEGEYATARAASAA--GTIMTLSSWST----SSVEEVA-STGP-GIRFFQLY 130 (323)
Q Consensus 66 ~g~~~~~Pi~iaPm-------~~~~l~~~~~e~~~a~aa~~~--G~~~~vs~~s~----~~~eei~-~~~~-~~~~~QLy 130 (323)
+|.++|-|+.=.|+ +..+=...+.-+.+.+..++. ++|.++=++.+ ..+|+.. ++.. +.-.+ |-
T Consensus 50 LGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGl-iv 128 (265)
T COG0159 50 LGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGL-LV 128 (265)
T ss_pred ecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEE-Ee
Confidence 57788888877775 111111223345677777644 35676665543 2344421 1111 11111 12
Q ss_pred ecCChHHHHHHHHHHHHcCCcEEEEecCCCCCC-chHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccC
Q 020636 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLG-RREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (323)
Q Consensus 131 ~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g-~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (323)
+.-..+...++.+.+++.|.+.+.+. .|... +|-+.+...-. +... -+ +. .+. +|.. ...
T Consensus 129 pDLP~ee~~~~~~~~~~~gi~~I~lv--aPtt~~~rl~~i~~~a~---GFiY-~v-s~-~Gv--TG~~---------~~~ 189 (265)
T COG0159 129 PDLPPEESDELLKAAEKHGIDPIFLV--APTTPDERLKKIAEAAS---GFIY-YV-SR-MGV--TGAR---------NPV 189 (265)
T ss_pred CCCChHHHHHHHHHHHHcCCcEEEEe--CCCCCHHHHHHHHHhCC---CcEE-EE-ec-ccc--cCCC---------ccc
Confidence 23335555566777778888766543 23332 34333322110 0000 00 00 000 0000 001
Q ss_pred CccCHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 210 RSLSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
.....+.++++|+.++.|+.+. ||.++++++.+.+. ||+|+|.
T Consensus 190 ~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVG 233 (265)
T COG0159 190 SADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA-ADGVIVG 233 (265)
T ss_pred chhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh-CCeEEEc
Confidence 1123557999999999999999 89999999999999 9999993
No 336
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=95.71 E-value=0.077 Score=48.89 Aligned_cols=39 Identities=38% Similarity=0.550 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 214 WKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
.+.++.+|+.++.|+.+. |+.++++++.+. .|+|+++|.
T Consensus 187 ~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVG 226 (259)
T PF00290_consen 187 KEFIKRIKKHTDLPVAVGFGISTPEQAKKLA-AGADGVIVG 226 (259)
T ss_dssp HHHHHHHHHTTSS-EEEESSS-SHHHHHHHH-TTSSEEEES
T ss_pred HHHHHHHHhhcCcceEEecCCCCHHHHHHHH-ccCCEEEEC
Confidence 456899999999999999 899999999998 999999994
No 337
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=95.71 E-value=1 Score=42.09 Aligned_cols=76 Identities=25% Similarity=0.330 Sum_probs=59.0
Q ss_pred CCHHHHHHHH-HcCCCEEEEcC---CCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH-HHHHHHHHcCCCEEEE
Q 020636 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFV 308 (323)
Q Consensus 234 ~~~e~a~~~~-~~Gad~i~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~-~di~kal~lGAd~V~i 308 (323)
.++++|+... +.|+|.+-++- ||-.. ....-.++.|.+|.+.+ ++|+..=||=..+ +++.|++.+|..-|=|
T Consensus 156 T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~-~~p~L~~~~L~~I~~~~--~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi 232 (285)
T PRK07709 156 ADPAECKHLVEATGIDCLAPALGSVHGPYK-GEPNLGFAEMEQVRDFT--GVPLVLHGGTGIPTADIEKAISLGTSKINV 232 (285)
T ss_pred CCHHHHHHHHHHhCCCEEEEeecccccCcC-CCCccCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEe
Confidence 5789988777 58999999864 44321 11223678899999988 8999999987777 6777899999999999
Q ss_pred cccc
Q 020636 309 SIMP 312 (323)
Q Consensus 309 G~~~ 312 (323)
+|-+
T Consensus 233 ~T~l 236 (285)
T PRK07709 233 NTEN 236 (285)
T ss_pred ChHH
Confidence 8865
No 338
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=95.69 E-value=0.68 Score=43.26 Aligned_cols=77 Identities=25% Similarity=0.266 Sum_probs=57.5
Q ss_pred CCHHHHHHHH-HcCCCEEEEcC---CCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH-HHHHHHHHcCCCEEEE
Q 020636 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFV 308 (323)
Q Consensus 234 ~~~e~a~~~~-~~Gad~i~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~-~di~kal~lGAd~V~i 308 (323)
.++++|+... +.|+|.+-++. ||-... ...-.++.|.+|.+.+ ++|+..=||=..+ +++.|++.+|..-|=|
T Consensus 155 T~peeA~~Fv~~TgvD~LAvaiGt~HG~y~~-~p~Ld~~~L~~I~~~~--~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi 231 (284)
T PRK12737 155 TNPDAAAEFVERTGIDSLAVAIGTAHGLYKG-EPKLDFERLAEIREKV--SIPLVLHGASGVPDEDVKKAISLGICKVNV 231 (284)
T ss_pred CCHHHHHHHHHHhCCCEEeeccCccccccCC-CCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHCCCeEEEe
Confidence 4788888776 59999999874 553321 1123678899999988 7999998865555 4566789999999999
Q ss_pred ccccc
Q 020636 309 SIMPC 313 (323)
Q Consensus 309 G~~~~ 313 (323)
+|-+.
T Consensus 232 ~T~l~ 236 (284)
T PRK12737 232 ATELK 236 (284)
T ss_pred CcHHH
Confidence 98663
No 339
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=95.68 E-value=0.66 Score=43.30 Aligned_cols=76 Identities=21% Similarity=0.295 Sum_probs=57.1
Q ss_pred CCHHHHHHHH-HcCCCEEEEcC---CCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH-HHHHHHHHcCCCEEEE
Q 020636 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFV 308 (323)
Q Consensus 234 ~~~e~a~~~~-~~Gad~i~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~-~di~kal~lGAd~V~i 308 (323)
.++++|+... +.|+|.+-++- ||.... ...-.++.|.+|.+.+ ++|+..=||=..+ +++.+++.+|..-|=+
T Consensus 153 T~peea~~Fv~~TgvD~LAvaiGt~HG~yk~-~p~Ldf~~L~~I~~~~--~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi 229 (282)
T TIGR01858 153 TDPQEAKEFVEATGVDSLAVAIGTAHGLYKK-TPKLDFDRLAEIREVV--DVPLVLHGASDVPDEDVRRTIELGICKVNV 229 (282)
T ss_pred CCHHHHHHHHHHHCcCEEecccCccccCcCC-CCccCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHHcCCeEEEe
Confidence 5688887776 69999999864 553321 1233678999999988 7999998865555 5566788999999999
Q ss_pred cccc
Q 020636 309 SIMP 312 (323)
Q Consensus 309 G~~~ 312 (323)
+|-+
T Consensus 230 ~T~l 233 (282)
T TIGR01858 230 ATEL 233 (282)
T ss_pred CcHH
Confidence 9866
No 340
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=95.67 E-value=0.44 Score=44.10 Aligned_cols=87 Identities=24% Similarity=0.483 Sum_probs=55.2
Q ss_pred cCCCEEEecc--CCHHH----HHHHHHcCCCEEEEcCCCCCC-CCCCcchHHHHHHHHHHhcCCCeEEEe----------
Q 020636 224 TKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQ-LDYVPATIMALEEVVKATQGRIPVFLD---------- 286 (323)
Q Consensus 224 ~~~pv~vK~i--~~~e~----a~~~~~~Gad~i~vs~~gg~~-~~~~~~~~~~l~~i~~~~~~~~pvia~---------- 286 (323)
++.||.+|-- .++++ ++.+.+.|-..|++.-+|-+- ...-..++..++.+++.. ...|||.|
T Consensus 129 t~kpV~lKrGqf~s~~e~~~aae~i~~~Gn~~vilcERG~~fgy~~~~~D~~~ip~mk~~~-t~lPVi~DpSHsvq~p~~ 207 (281)
T PRK12457 129 TGKPVNIKKPQFMSPTQMKHVVSKCREAGNDRVILCERGSSFGYDNLVVDMLGFRQMKRTT-GDLPVIFDVTHSLQCRDP 207 (281)
T ss_pred cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCCCCCCcccchHHHHHHHhhC-CCCCEEEeCCccccCCCC
Confidence 4567777733 55555 566778899999988777541 111234556677776642 15899986
Q ss_pred -----cCCCCH--HHHHHHHHcCCCEEEEccc
Q 020636 287 -----GGVRRG--TDVFKALALGASGIFVSIM 311 (323)
Q Consensus 287 -----GGI~~~--~di~kal~lGAd~V~iG~~ 311 (323)
||-|.- .=+..|++.|||++++=+.
T Consensus 208 ~g~~s~G~re~v~~larAAvA~GaDGl~iEvH 239 (281)
T PRK12457 208 LGAASGGRRRQVLDLARAGMAVGLAGLFLEAH 239 (281)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCEEEEEec
Confidence 444432 2234677899999999753
No 341
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=95.65 E-value=0.15 Score=48.43 Aligned_cols=67 Identities=13% Similarity=0.068 Sum_probs=52.7
Q ss_pred HHHHHHHHcC--CCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 237 EDARIAVQAG--AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 237 e~a~~~~~~G--ad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
+-+..+.++| +|.|++...-|+ ....++.++.+++.. +.|.+..|+|-+.+++..++.+|||+|-+|
T Consensus 97 ~r~~~lv~a~~~~d~i~~D~ahg~----s~~~~~~i~~i~~~~--p~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 97 EFVTQLAEEALTPEYITIDIAHGH----SNSVINMIKHIKTHL--PDSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred HHHHHHHhcCCCCCEEEEeCccCc----hHHHHHHHHHHHHhC--CCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 3367778889 799998653332 134567788888877 578888899999999999999999999887
No 342
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=95.65 E-value=0.097 Score=49.09 Aligned_cols=83 Identities=19% Similarity=0.275 Sum_probs=57.0
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCC-cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~-~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~~ 313 (323)
++.+.+.|+++|.+.++.|....-. .--.+++..+.+.+.+++||++--|-.+-.|.++ |-++|||+|++..++.
T Consensus 27 v~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y 106 (294)
T TIGR02313 27 IEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPYY 106 (294)
T ss_pred HHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCccC
Confidence 4566789999999987766422111 1123455666666777899998667667766653 4458999999999988
Q ss_pred cCcchhhh
Q 020636 314 QCPLTEKI 321 (323)
Q Consensus 314 ~~~~~~~~ 321 (323)
..|..+.+
T Consensus 107 ~~~~~~~l 114 (294)
T TIGR02313 107 NKPNQEAL 114 (294)
T ss_pred CCCCHHHH
Confidence 77765543
No 343
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=95.65 E-value=0.06 Score=53.90 Aligned_cols=243 Identities=16% Similarity=0.183 Sum_probs=134.0
Q ss_pred hhccccccccccc-CC-CCCccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 020636 42 AFSRILFRPRILI-DV-SKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (323)
Q Consensus 42 ~~~~i~l~pr~l~-~~-~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~ 119 (323)
.||++.|+|.... .. +++|++|. +.++++.||+-|||-- .+|..||.+.++.|...++.. +.++|+..+
T Consensus 13 tfddvll~p~~~~~~~~~~v~~~t~-~~~~l~~P~vsa~mdt------vTe~~MAi~~A~~GGigvIh~--n~~i~~qae 83 (475)
T TIGR01303 13 TYNDVFMVPSRSEVGSRFDVDLSTA-DGTGTTIPLVVANMTA------VAGRRMAETVARRGGIVILPQ--DLPIPAVKQ 83 (475)
T ss_pred CccceEEccCccCccCCCceeeccc-ccCccccceeeccchh------hHHHHHHHHHHHCCCEEEEeC--CCCHHHHHH
Confidence 5999999998763 33 48899988 4579999999999844 378899999999999999986 345555433
Q ss_pred cC------C--CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCC-CCCC-chHHHHhhccCCCCcccccccccccc
Q 020636 120 TG------P--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT-PRLG-RREADIKNRFTLPPFLTLKNFQGLDL 189 (323)
Q Consensus 120 ~~------~--~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~-p~~g-~r~~d~~~~~~~~~~~~~~~~~~~~~ 189 (323)
.. + ....+.+.. ...+.+.++...+.+...+.+. |. -..| ...+|++.. +....+. +...
T Consensus 84 ~v~~VKv~eim~~~pvtv~p---~~tI~eA~~lm~~~~~~~~vVv-D~gklvGIVT~rDL~~~---~~~~~V~---dIMt 153 (475)
T TIGR01303 84 TVAFVKSRDLVLDTPITLAP---HDTVSDAMALIHKRAHGAAVVI-LEDRPVGLVTDSDLLGV---DRFTQVR---DIMS 153 (475)
T ss_pred HHhhcchhhccccCCeEECC---CCCHHHHHHHHHhcCCeEEEEE-ECCEEEEEEEHHHhhcC---CCCCCHH---HHcc
Confidence 21 1 001112221 2233455566666676655543 31 1112 123444210 0000000 0000
Q ss_pred CCCcc---c-cchhhHHHHhhc-------cC------CccCHHHHHHHHHhcC-----CCEEEe---cc--CCHHHHHHH
Q 020636 190 GKMDE---A-NDSGLAAYVAGQ-------ID------RSLSWKDVKWLQTITK-----LPILVK---GV--LTAEDARIA 242 (323)
Q Consensus 190 ~~~~~---~-~~~~~~~~~~~~-------~~------~~~~~~~i~~i~~~~~-----~pv~vK---~i--~~~e~a~~~ 242 (323)
.+... . .-....+.+... .| .-.+..+|......-. .-+.+. ++ ...+-++.+
T Consensus 154 ~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~~~~d~~grl~Vgaav~~~~~~~~ra~~L 233 (475)
T TIGR01303 154 TDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYTPATDAAGRLRIGAAVGINGDVGGKAKAL 233 (475)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCCchhhhccCceehheeeeCccHHHHHHHH
Confidence 00000 0 000000000000 00 0112333332222110 011111 11 224668899
Q ss_pred HHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 243 ~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
.++|+|.|++...-|+. ....+.+++|++..+ ++|||+ |.+.|.+.+..++.+|||+|-+|
T Consensus 234 v~aGVd~i~~D~a~g~~----~~~~~~i~~i~~~~~-~~~vi~-g~~~t~~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 234 LDAGVDVLVIDTAHGHQ----VKMISAIKAVRALDL-GVPIVA-GNVVSAEGVRDLLEAGANIIKVG 294 (475)
T ss_pred HHhCCCEEEEeCCCCCc----HHHHHHHHHHHHHCC-CCeEEE-eccCCHHHHHHHHHhCCCEEEEC
Confidence 99999999986543542 345677888887654 699999 77999999999999999999865
No 344
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=95.64 E-value=0.17 Score=48.25 Aligned_cols=96 Identities=20% Similarity=0.182 Sum_probs=61.5
Q ss_pred HHHHHHHHhcCCCEEEecc-CCH----HHHHHHHHcCCCEEEEcC---CCCCCCCCC-c--chHHHHHHHHHHhcCCCeE
Q 020636 215 KDVKWLQTITKLPILVKGV-LTA----EDARIAVQAGAAGIIVSN---HGARQLDYV-P--ATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~vK~i-~~~----e~a~~~~~~Gad~i~vs~---~gg~~~~~~-~--~~~~~l~~i~~~~~~~~pv 283 (323)
+.++.+++..+.|++++.. .+. +.++.+.++|+|+|.+.- ++.....+. . ...+.+.++++.+ ++||
T Consensus 91 ~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~--~iPV 168 (334)
T PRK07565 91 ELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV--SIPV 168 (334)
T ss_pred HHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc--CCcE
Confidence 4566666667889999964 344 336777889999999832 111111111 1 1245666666665 7899
Q ss_pred EEe--cCCCCHHHHHHHHH-cCCCEEEEcccc
Q 020636 284 FLD--GGVRRGTDVFKALA-LGASGIFVSIMP 312 (323)
Q Consensus 284 ia~--GGI~~~~di~kal~-lGAd~V~iG~~~ 312 (323)
++- +++.+..++.+++. .|||+|.+-..+
T Consensus 169 ~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n~~ 200 (334)
T PRK07565 169 AVKLSPYFSNLANMAKRLDAAGADGLVLFNRF 200 (334)
T ss_pred EEEeCCCchhHHHHHHHHHHcCCCeEEEECCc
Confidence 875 45556778888775 899999884433
No 345
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=95.62 E-value=0.076 Score=48.51 Aligned_cols=73 Identities=23% Similarity=0.282 Sum_probs=57.3
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
.+-|+...+.||++|.|-.-+. .-..+++.|..+++.+ ++||+.-..|-+..++.++..+|||+|.+=-.++.
T Consensus 64 ~~~A~~y~~~GA~aISVlTe~~----~F~Gs~~~l~~v~~~v--~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L~ 136 (247)
T PRK13957 64 VQIAKTYETLGASAISVLTDQS----YFGGSLEDLKSVSSEL--KIPVLRKDFILDEIQIREARAFGASAILLIVRILT 136 (247)
T ss_pred HHHHHHHHHCCCcEEEEEcCCC----cCCCCHHHHHHHHHhc--CCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhCC
Confidence 3557888999999998743211 1123678888888887 89999999999999999999999999977554444
No 346
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=95.60 E-value=0.22 Score=45.92 Aligned_cols=41 Identities=34% Similarity=0.417 Sum_probs=35.0
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcC
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSN 254 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~ 254 (323)
..+.++.+|+..+.|+++. |+.+.++++.+.+. ||+++|..
T Consensus 188 ~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGS 229 (258)
T PRK13111 188 LAELVARLKAHTDLPVAVGFGISTPEQAAAIAAV-ADGVIVGS 229 (258)
T ss_pred HHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHh-CCEEEEcH
Confidence 3457999999889999998 67899999999986 99999943
No 347
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=95.60 E-value=0.95 Score=42.40 Aligned_cols=76 Identities=24% Similarity=0.332 Sum_probs=59.7
Q ss_pred CCHHHHHHHHH-cCCCEEEEcC---CCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCH-HHHHHHHHcCCCEEE
Q 020636 234 LTAEDARIAVQ-AGAAGIIVSN---HGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIF 307 (323)
Q Consensus 234 ~~~e~a~~~~~-~Gad~i~vs~---~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~-~di~kal~lGAd~V~ 307 (323)
.++++|+...+ .|+|.+-++- ||.... ... -.++.|.+|.+.+ ++|+..=||=..+ +++.+++..|..-|=
T Consensus 158 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~-~p~~Ld~~~L~~I~~~v--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiN 234 (288)
T TIGR00167 158 TDPEEAKEFVKLTGVDSLAAAIGNVHGVYKG-EPKGLDFERLEEIQKYV--NLPLVLHGGSGIPDEEIKKAISLGVVKVN 234 (288)
T ss_pred CCHHHHHHHHhccCCcEEeeccCccccccCC-CCCccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEE
Confidence 56888888774 7999999864 453321 112 4788999999988 8999999988888 578889999999999
Q ss_pred Ecccc
Q 020636 308 VSIMP 312 (323)
Q Consensus 308 iG~~~ 312 (323)
++|-+
T Consensus 235 i~T~l 239 (288)
T TIGR00167 235 IDTEL 239 (288)
T ss_pred cChHH
Confidence 98865
No 348
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=95.57 E-value=0.93 Score=42.40 Aligned_cols=76 Identities=22% Similarity=0.334 Sum_probs=58.7
Q ss_pred CCHHHHHHHH-HcCCCEEEEcC---CCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH-HHHHHHHHcCCCEEEE
Q 020636 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFV 308 (323)
Q Consensus 234 ~~~e~a~~~~-~~Gad~i~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~-~di~kal~lGAd~V~i 308 (323)
.++++|+... +.|+|.+-++- ||-.. ....-.++.|.+|.+.+ ++|+..=||=..+ +++.+++.+|..-|=+
T Consensus 156 T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~-~~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~~GI~KiNi 232 (286)
T PRK08610 156 ADPKECQELVEKTGIDALAPALGSVHGPYK-GEPKLGFKEMEEIGLST--GLPLVLHGGTGIPTKDIQKAIPFGTAKINV 232 (286)
T ss_pred CCHHHHHHHHHHHCCCEEEeeccccccccC-CCCCCCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHHCCCeEEEe
Confidence 5789988776 57999999874 44322 11123578999999988 8999999988777 6677899999999999
Q ss_pred cccc
Q 020636 309 SIMP 312 (323)
Q Consensus 309 G~~~ 312 (323)
+|-+
T Consensus 233 ~T~l 236 (286)
T PRK08610 233 NTEN 236 (286)
T ss_pred ccHH
Confidence 8865
No 349
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=95.56 E-value=0.12 Score=49.04 Aligned_cols=68 Identities=15% Similarity=0.076 Sum_probs=50.7
Q ss_pred HHHHHHHHH--cCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 236 AEDARIAVQ--AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 236 ~e~a~~~~~--~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
.+-+..+.+ +|+|.|++...-|+ ....++.++++++.++ +++||+ |.|-|++-+...+.+|||+|=+|
T Consensus 110 ~er~~~L~~~~~g~D~iviD~AhGh----s~~~i~~ik~ik~~~P-~~~vIa-GNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 110 FEKTKQILALSPALNFICIDVANGY----SEHFVQFVAKAREAWP-DKTICA-GNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCc----HHHHHHHHHHHHHhCC-CCcEEE-ecccCHHHHHHHHHcCCCEEEEc
Confidence 344677777 59999998643332 1345678888888775 577665 99999999999999999998655
No 350
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=95.55 E-value=0.12 Score=48.34 Aligned_cols=81 Identities=20% Similarity=0.250 Sum_probs=55.0
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHH----HHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA----LALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~pvia~GGI~~~~di~ka----l~lGAd~V~iG~~~~ 313 (323)
++.+.+.|+++|.+.++.|....-... -.+++..+.+.+.+++|||+.-|- +-.+.++. -++|||++++-.++.
T Consensus 27 ~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~pP~y 105 (289)
T cd00951 27 VEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEKAGADGILLLPPYL 105 (289)
T ss_pred HHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 456678999999998776643221211 234566666666778999997775 66776653 347999999988877
Q ss_pred cCcchhh
Q 020636 314 QCPLTEK 320 (323)
Q Consensus 314 ~~~~~~~ 320 (323)
..+..+.
T Consensus 106 ~~~~~~~ 112 (289)
T cd00951 106 TEAPQEG 112 (289)
T ss_pred CCCCHHH
Confidence 6554443
No 351
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=95.55 E-value=0.11 Score=45.33 Aligned_cols=103 Identities=17% Similarity=0.189 Sum_probs=66.0
Q ss_pred HHHHHHHHhc-CCCEEEeccCCHHHHHHHHHcCCCEEEE-c---CCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCC
Q 020636 215 KDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIV-S---NHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (323)
Q Consensus 215 ~~i~~i~~~~-~~pv~vK~i~~~e~a~~~~~~Gad~i~v-s---~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI 289 (323)
+.++.||+.- ..-+.+|--.+.+++....+ -+|.+-| + +.||.. ..+.-+.-+..+++..+ +..+-+|||+
T Consensus 103 ~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~-~~D~vLvMtVePGFGGQk--Fme~mm~KV~~lR~kyp-~l~ievDGGv 178 (224)
T KOG3111|consen 103 ELVEKIREKGMKVGLALKPGTPVEDLEPLAE-HVDMVLVMTVEPGFGGQK--FMEDMMPKVEWLREKYP-NLDIEVDGGV 178 (224)
T ss_pred HHHHHHHHcCCeeeEEeCCCCcHHHHHHhhc-cccEEEEEEecCCCchhh--hHHHHHHHHHHHHHhCC-CceEEecCCc
Confidence 4577787753 33356666677788776655 4565544 2 233311 01112223333443332 5666699999
Q ss_pred CCHHHHHHHHHcCCCEEEEccccccCcchhhhc
Q 020636 290 RRGTDVFKALALGASGIFVSIMPCQCPLTEKIN 322 (323)
Q Consensus 290 ~~~~di~kal~lGAd~V~iG~~~~~~~~~~~~~ 322 (323)
. ++-+-++.++||+.+..|++.++.+..+++.
T Consensus 179 ~-~~ti~~~a~AGAN~iVaGsavf~a~d~~~vi 210 (224)
T KOG3111|consen 179 G-PSTIDKAAEAGANMIVAGSAVFGAADPSDVI 210 (224)
T ss_pred C-cchHHHHHHcCCCEEEecceeecCCCHHHHH
Confidence 5 5778899999999999999999999988764
No 352
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=95.53 E-value=1.2 Score=42.12 Aligned_cols=77 Identities=18% Similarity=0.176 Sum_probs=59.1
Q ss_pred CCHHHHHHHH-HcCCCEEEEcC---CCCCCCCC-CcchHHHHHHHHHHhcCCCeEEEecCCCCHH---------------
Q 020636 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDY-VPATIMALEEVVKATQGRIPVFLDGGVRRGT--------------- 293 (323)
Q Consensus 234 ~~~e~a~~~~-~~Gad~i~vs~---~gg~~~~~-~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~--------------- 293 (323)
.++++|+... +.|+|.+-++- ||-....+ ..-.++.|.+|.+.+ ++|+..=||=..+.
T Consensus 155 TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~--~iPLVLHGgSGip~e~~~~~~~~g~~~~~ 232 (307)
T PRK05835 155 VNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLT--NIPLVLHGASAIPDDVRKSYLDAGGDLKG 232 (307)
T ss_pred CCHHHHHHHHHhhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHh--CCCEEEeCCCCCchHHhhhhhhhcccccc
Confidence 5688888777 57999999864 44322111 223678999999988 89999999877776
Q ss_pred -------HHHHHHHcCCCEEEEcccc
Q 020636 294 -------DVFKALALGASGIFVSIMP 312 (323)
Q Consensus 294 -------di~kal~lGAd~V~iG~~~ 312 (323)
++.|++.+|..-|=++|-+
T Consensus 233 ~~g~~~e~~~kai~~GI~KiNi~T~l 258 (307)
T PRK05835 233 SKGVPFEFLQESVKGGINKVNTDTDL 258 (307)
T ss_pred ccCCCHHHHHHHHHcCceEEEeChHH
Confidence 7999999999999998865
No 353
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=95.51 E-value=0.16 Score=48.10 Aligned_cols=42 Identities=17% Similarity=0.592 Sum_probs=36.1
Q ss_pred cCHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHH-HcCCCEEEEc
Q 020636 212 LSWKDVKWLQTITKLPILVK-GVLTAEDARIAV-QAGAAGIIVS 253 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~-~~Gad~i~vs 253 (323)
..|+.++.+++.+++||+.- ++.+.++++.++ +.|||+|.+.
T Consensus 179 ~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~Vmig 222 (319)
T TIGR00737 179 ANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIG 222 (319)
T ss_pred hhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEC
Confidence 35888999999999998776 578999999998 6899999883
No 354
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=95.50 E-value=0.073 Score=50.67 Aligned_cols=68 Identities=16% Similarity=0.086 Sum_probs=50.4
Q ss_pred HHHHHHHHHcCC--CEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 236 AEDARIAVQAGA--AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 236 ~e~a~~~~~~Ga--d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
.+.+..+.++|+ |.|.+...-|+ .....+.++++++..+ ++|||+ |.|.|.+++..++.+|||++.+|
T Consensus 99 ~~~~~~Lv~ag~~~d~i~iD~a~gh----~~~~~e~I~~ir~~~p-~~~vi~-g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 99 YDFVDQLAAEGLTPEYITIDIAHGH----SDSVINMIQHIKKHLP-ETFVIA-GNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCc----hHHHHHHHHHHHhhCC-CCeEEE-EecCCHHHHHHHHHcCcCEEEEC
Confidence 356788889965 99998432221 2345577888887763 356555 77999999999999999999887
No 355
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=95.48 E-value=0.086 Score=49.42 Aligned_cols=106 Identities=25% Similarity=0.334 Sum_probs=62.6
Q ss_pred CCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhH
Q 020636 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 201 (323)
Q Consensus 122 ~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (323)
+-+.++.+- .+.+...+++++++++|+++|.++-.. .+. ..+.+.+. | .+. .. .+ ++
T Consensus 157 ~~pv~vKi~--~~~~~~~~~a~~l~~~G~d~i~v~nt~--~~~-~~~~~~~~--~---~~~----~~-----~g---g~- 213 (300)
T TIGR01037 157 DVPVFAKLS--PNVTDITEIAKAAEEAGADGLTLINTL--RGM-KIDIKTGK--P---ILA----NK-----TG---GL- 213 (300)
T ss_pred CCCEEEECC--CChhhHHHHHHHHHHcCCCEEEEEccC--Ccc-ccccccCc--e---eeC----CC-----Cc---cc-
Confidence 346777763 344556788889999999999875211 111 00111100 0 000 00 00 00
Q ss_pred HHHhhccCCccCHHHHHHHHHhcCCCEEE-eccCCHHHHHHHHHcCCCEEEEc
Q 020636 202 AYVAGQIDRSLSWKDVKWLQTITKLPILV-KGVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~i~~~~~~pv~v-K~i~~~e~a~~~~~~Gad~i~vs 253 (323)
+........++.+.++++.+++||+. .++.++++|.+++.+|||+|.+.
T Consensus 214 ---sg~~~~~~~l~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~ig 263 (300)
T TIGR01037 214 ---SGPAIKPIALRMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQVG 263 (300)
T ss_pred ---cchhhhHHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCceeec
Confidence 00001113457788898888999875 57899999999999999999873
No 356
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=95.48 E-value=0.21 Score=47.45 Aligned_cols=42 Identities=12% Similarity=0.417 Sum_probs=36.4
Q ss_pred cCHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHH-cCCCEEEEc
Q 020636 212 LSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQ-AGAAGIIVS 253 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~-~Gad~i~vs 253 (323)
..|+.++++++.+++||+.- ++.+.++++.+.+ .|||+|.+.
T Consensus 181 a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiG 224 (321)
T PRK10415 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIG 224 (321)
T ss_pred cChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEC
Confidence 46899999999999998776 5789999999997 799999884
No 357
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=95.46 E-value=0.15 Score=48.12 Aligned_cols=97 Identities=20% Similarity=0.232 Sum_probs=64.7
Q ss_pred HHHHHHHHhcC--CCEEEeccCC----HHHHHHHHHc---CCCEEEEcCCCCCCCCCCcchHHHHHHHHHHh---c-CCC
Q 020636 215 KDVKWLQTITK--LPILVKGVLT----AEDARIAVQA---GAAGIIVSNHGARQLDYVPATIMALEEVVKAT---Q-GRI 281 (323)
Q Consensus 215 ~~i~~i~~~~~--~pv~vK~i~~----~e~a~~~~~~---Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~-~~~ 281 (323)
+.++.+++..+ .|+++ .+.+ .++|..+.+. ++|+|.+.|.+++ . ..+.+.+.++++++ + .++
T Consensus 172 ~A~~~~~~~~p~~~~i~v-evdt~~~~v~eal~~~~~~~~~~d~I~lDn~~~~--~--G~~~~~~~~~~~~l~~~g~~~~ 246 (302)
T cd01571 172 EAWKAFDETYPEDVPRIA-LIDTFNDEKEEALKAAKALGDKLDGVRLDTPSSR--R--GVFRYLIREVRWALDIRGYKHV 246 (302)
T ss_pred HHHHHHHHHCCCcCCeEE-EEeecCcchHHHHHHHHHhCCCCcEEEECCCCCC--C--CCHHHHHHHHHHHHHhCCCCCe
Confidence 34677777665 34433 3333 3467767666 4899988876431 1 12344444554443 2 367
Q ss_pred eEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 282 PVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 282 pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
.|+++||| +.+.+.+....|+|.+.+|+.+...|.
T Consensus 247 ~ieaSGgI-~~~~i~~~a~~gvD~isvGs~~~~~~~ 281 (302)
T cd01571 247 KIFVSGGL-DEEDIKELEDVGVDAFGVGTAISKAPP 281 (302)
T ss_pred EEEEeCCC-CHHHHHHHHHcCCCEEECCcccCCCCC
Confidence 89999999 889999998999999999998876543
No 358
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=95.46 E-value=0.13 Score=48.46 Aligned_cols=80 Identities=20% Similarity=0.245 Sum_probs=53.9
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHH----HcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL----ALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal----~lGAd~V~iG~~~~ 313 (323)
++.+.+.|+|+|.+.++.|....-... -.+++..+++.+.+++|||+.-|- +-.+.++.. .+|||+|++-.++.
T Consensus 34 i~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~~~~a~~~Gadav~~~pP~y 112 (303)
T PRK03620 34 LEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEYAQAAERAGADGILLLPPYL 112 (303)
T ss_pred HHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 456778999999998766642211111 234566666777778999986664 666666433 47999999988876
Q ss_pred cCcchh
Q 020636 314 QCPLTE 319 (323)
Q Consensus 314 ~~~~~~ 319 (323)
..+..+
T Consensus 113 ~~~~~~ 118 (303)
T PRK03620 113 TEAPQE 118 (303)
T ss_pred CCCCHH
Confidence 655443
No 359
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=95.43 E-value=0.12 Score=48.62 Aligned_cols=111 Identities=19% Similarity=0.230 Sum_probs=64.7
Q ss_pred CCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhH
Q 020636 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 201 (323)
Q Consensus 122 ~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (323)
..|.++.|-+ +...+.++++.++++|+++++++ ++-. +....|+... ++.... +. .... .+
T Consensus 168 ~~Pv~vKl~~--~~~~~~~~a~~~~~~Gadgi~~~-Nt~~-~~~~id~~~~---~~~~~~--------~~-~~~~-gg-- 228 (299)
T cd02940 168 KIPVIAKLTP--NITDIREIARAAKEGGADGVSAI-NTVN-SLMGVDLDGT---PPAPGV--------EG-KTTY-GG-- 228 (299)
T ss_pred CCCeEEECCC--CchhHHHHHHHHHHcCCCEEEEe-cccc-cccccccccC---Cccccc--------cC-CCCc-Cc--
Confidence 3578888853 44456788888999999998753 2111 1000011000 000000 00 0000 00
Q ss_pred HHHhhccCCccCHHHHHHHHHhc--CCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 202 AYVAGQIDRSLSWKDVKWLQTIT--KLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~i~~~~--~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
++........|+.|.++++.+ ++||+.- |+.+.+|+.+.+.+|||+|.+.
T Consensus 229 --~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ 281 (299)
T cd02940 229 --YSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVC 281 (299)
T ss_pred --ccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEc
Confidence 000112234689999999998 7887655 6899999999999999999874
No 360
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=95.37 E-value=0.079 Score=53.25 Aligned_cols=249 Identities=16% Similarity=0.226 Sum_probs=132.4
Q ss_pred hhcccccccccc-cCCCCCccceeec-CcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 020636 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (323)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~~d~~t~i~-g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~ 119 (323)
.||++.|+|... ...+++|++|.+- +..+..||+-|||... ++..++.+.++.|...+++. ..+.++..+
T Consensus 10 t~ddv~l~p~~~~~~~~~~~~~t~l~~~~~~~~Piv~a~m~~v------T~~ela~ava~~GglG~i~~--~~~~e~~~~ 81 (486)
T PRK05567 10 TFDDVLLVPAHSEVLPNDVDLSTQLTKNIRLNIPLLSAAMDTV------TEARMAIAMAREGGIGVIHK--NMSIEEQAE 81 (486)
T ss_pred CccceEecccccCcCcccccccchhhhhcCcCcCEEeCCCCCc------CHHHHHHHHHhCCCCCEecC--CCCHHHHHH
Confidence 499999999865 3456788988874 5678899999999764 45578888888888888874 234444322
Q ss_pred c----C--CCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCC-CCC-chHHHHhhccCCCCccccccccccccCC
Q 020636 120 T----G--PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP-RLG-RREADIKNRFTLPPFLTLKNFQGLDLGK 191 (323)
Q Consensus 120 ~----~--~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p-~~g-~r~~d~~~~~~~~~~~~~~~~~~~~~~~ 191 (323)
. . .....-++..-.....+.+.++.+.+.++..+.|.=+.. ..| ...+|++...... ..+..+... .+
T Consensus 82 ~I~~vk~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~~~--~~V~dim~~--~~ 157 (486)
T PRK05567 82 EVRKVKRSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETDLS--QPVSEVMTK--ER 157 (486)
T ss_pred HHHHhhhhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcccCC--CcHHHHcCC--CC
Confidence 1 1 111111111111222334556666677777665532110 011 1223332110000 000000000 00
Q ss_pred C---c-cccchhhHHHHhhcc-------C------CccCHHHHHHHHHh------cCCCEEEeccC-----CHHHHHHHH
Q 020636 192 M---D-EANDSGLAAYVAGQI-------D------RSLSWKDVKWLQTI------TKLPILVKGVL-----TAEDARIAV 243 (323)
Q Consensus 192 ~---~-~~~~~~~~~~~~~~~-------~------~~~~~~~i~~i~~~------~~~pv~vK~i~-----~~e~a~~~~ 243 (323)
. . ...-......+.... | .-.+.+++...... ....+.+.... +.+.++.+.
T Consensus 158 ~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aai~~~~~~~e~a~~L~ 237 (486)
T PRK05567 158 LVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVGVGADNEERAEALV 237 (486)
T ss_pred CEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEeecccCcchHHHHHHHH
Confidence 0 0 000000000000000 0 01233332221111 11234555432 357889999
Q ss_pred HcCCCEEEEcC-CCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 244 QAGAAGIIVSN-HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 244 ~~Gad~i~vs~-~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
++|+|.|++.. ||.. ...++.+..+++..+ ++||++ |+|.|.+++..++.+|||+|-+|
T Consensus 238 ~agvdvivvD~a~g~~-----~~vl~~i~~i~~~~p-~~~vi~-g~v~t~e~a~~l~~aGad~i~vg 297 (486)
T PRK05567 238 EAGVDVLVVDTAHGHS-----EGVLDRVREIKAKYP-DVQIIA-GNVATAEAARALIEAGADAVKVG 297 (486)
T ss_pred HhCCCEEEEECCCCcc-----hhHHHHHHHHHhhCC-CCCEEE-eccCCHHHHHHHHHcCCCEEEEC
Confidence 99999988754 3321 234567777776653 688888 99999999999999999999875
No 361
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=95.37 E-value=0.2 Score=47.57 Aligned_cols=95 Identities=15% Similarity=0.196 Sum_probs=61.3
Q ss_pred CCceeEEeeecCCh----HHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccc
Q 020636 122 PGIRFFQLYVYKDR----NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEAND 197 (323)
Q Consensus 122 ~~~~~~QLy~~~d~----~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (323)
+.|..+.+....+. +...++++.++++|+++|.|+--+.. ..++. + . .
T Consensus 123 ~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~--------~qg~s-g--------------~-~---- 174 (318)
T TIGR00742 123 NIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAW--------LSGLS-P--------------K-E---- 174 (318)
T ss_pred CCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchh--------hcCCC-c--------------c-c----
Confidence 45677777543221 44567788888999998877643221 01111 0 0 0
Q ss_pred hhhHHHHhhccCCccCHHHHHHHHHhc-CCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 198 SGLAAYVAGQIDRSLSWKDVKWLQTIT-KLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
. ..-+...|+.+.++++.+ ++||+.- ++.+.+|+...+. |||+|.+.
T Consensus 175 -------~-~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~dgVMig 223 (318)
T TIGR00742 175 -------N-REIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HVDGVMVG 223 (318)
T ss_pred -------c-ccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CCCEEEEC
Confidence 0 001235799999999887 7998655 5899999999886 99999884
No 362
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=95.36 E-value=0.86 Score=40.72 Aligned_cols=44 Identities=20% Similarity=0.452 Sum_probs=38.5
Q ss_pred CccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEc
Q 020636 210 RSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs 253 (323)
+..-|+.++++++...+|++.=|-.+.+.+..+.++|+++|.|.
T Consensus 143 ~~~G~~~l~~~~~~~~iP~vAIGGi~~~nv~~v~~~Ga~gVAvv 186 (211)
T COG0352 143 PPLGLEGLREIRELVNIPVVAIGGINLENVPEVLEAGADGVAVV 186 (211)
T ss_pred CccCHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHhCCCeEEeh
Confidence 34568889999998889988888899999999999999999874
No 363
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=95.34 E-value=0.14 Score=48.41 Aligned_cols=82 Identities=20% Similarity=0.220 Sum_probs=55.3
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHH----HcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL----ALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal----~lGAd~V~iG~~~~ 313 (323)
+..+.+.|+++|.+.++.|....-... -.+++..+.+.+.+++|||+--|=.+..|.++.. .+|||+|++-.++.
T Consensus 35 v~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y 114 (309)
T cd00952 35 VERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMW 114 (309)
T ss_pred HHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcC
Confidence 445678999999998776642211111 2345555666677789999876655666666543 47999999999887
Q ss_pred cCcchhh
Q 020636 314 QCPLTEK 320 (323)
Q Consensus 314 ~~~~~~~ 320 (323)
..+..+.
T Consensus 115 ~~~~~~~ 121 (309)
T cd00952 115 LPLDVDT 121 (309)
T ss_pred CCCCHHH
Confidence 6665443
No 364
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=95.30 E-value=0.15 Score=47.98 Aligned_cols=83 Identities=28% Similarity=0.379 Sum_probs=57.0
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~~ 313 (323)
++.+++.|+|+|++.++.|....-.. --.+.+..+++.+.+++|||+--|=.+-.+.++ |-.+|||++++-.+..
T Consensus 31 v~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY 110 (299)
T COG0329 31 VEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYY 110 (299)
T ss_pred HHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 45678999999999887764221111 123456666777777899999655555555543 3348999999999998
Q ss_pred cCcchhhh
Q 020636 314 QCPLTEKI 321 (323)
Q Consensus 314 ~~~~~~~~ 321 (323)
..|..+.+
T Consensus 111 ~k~~~~gl 118 (299)
T COG0329 111 NKPSQEGL 118 (299)
T ss_pred cCCChHHH
Confidence 88776543
No 365
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=95.30 E-value=0.17 Score=46.84 Aligned_cols=82 Identities=24% Similarity=0.362 Sum_probs=55.8
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~~ 313 (323)
++.+.+.|+++|.+.++.|....-... -.+++..+.+.+++++||++.-|-.+-.+.++ +-.+|||+|++-.++.
T Consensus 24 i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y 103 (281)
T cd00408 24 VEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYY 103 (281)
T ss_pred HHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 455678899999998876643222211 23456666666667899998777666666654 3347999999998887
Q ss_pred cCcchhh
Q 020636 314 QCPLTEK 320 (323)
Q Consensus 314 ~~~~~~~ 320 (323)
..+..+.
T Consensus 104 ~~~~~~~ 110 (281)
T cd00408 104 NKPSQEG 110 (281)
T ss_pred CCCCHHH
Confidence 7654443
No 366
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=95.29 E-value=2 Score=39.95 Aligned_cols=190 Identities=15% Similarity=0.127 Sum_probs=106.0
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCceee--cC---CCCCCHHHHH-------hcC-C-CceeEEeeecCChHH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------STG-P-GIRFFQLYVYKDRNV 137 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s~---~s~~~~eei~-------~~~-~-~~~~~QLy~~~d~~~ 137 (323)
.|.++.|+.-.+-.+.++-..+.+-+.+.|+-.++ ++ +.+.+.+|-. +.. + .+.+++.- ..+.+.
T Consensus 3 ~~a~~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~-~~s~~~ 81 (285)
T TIGR00674 3 ITALITPFKEDGSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTG-SNATEE 81 (285)
T ss_pred cCceeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCC-CccHHH
Confidence 46677787544334555555677777778865443 22 3344555522 222 2 34566653 234566
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHH
Q 020636 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (323)
Q Consensus 138 ~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (323)
+.++.+.+++.|++++.+.- |... + + +.+-..+..
T Consensus 82 ~i~~a~~a~~~Gad~v~v~p--P~y~------------~--------------~-----------------~~~~i~~~~ 116 (285)
T TIGR00674 82 AISLTKFAEDVGADGFLVVT--PYYN------------K--------------P-----------------TQEGLYQHF 116 (285)
T ss_pred HHHHHHHHHHcCCCEEEEcC--CcCC------------C--------------C-----------------CHHHHHHHH
Confidence 77788889999999998752 3210 0 0 001113345
Q ss_pred HHHHHhcCCCEEEecc-------CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCC
Q 020636 218 KWLQTITKLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 218 ~~i~~~~~~pv~vK~i-------~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
+.+.+.++.||++=.. .+++..+++.+.. ..+-+= +.. .++..+.++.+..+++..|+. |
T Consensus 117 ~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~~-~v~giK-------~s~-~d~~~~~~l~~~~~~~~~v~~-G--- 183 (285)
T TIGR00674 117 KAIAEEVDLPIILYNVPSRTGVSLYPETVKRLAEEP-NIVAIK-------EAT-GNLERISEIKAIAPDDFVVLS-G--- 183 (285)
T ss_pred HHHHhcCCCCEEEEECcHHhcCCCCHHHHHHHHcCC-CEEEEE-------eCC-CCHHHHHHHHHhcCCCeEEEE-C---
Confidence 5666667888887632 5677888777654 322221 111 234445556555543454443 3
Q ss_pred CHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 291 RGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
...-++..+.+||++.+.|..-+....+.+
T Consensus 184 ~d~~~~~~~~~G~~G~i~~~~~~~P~~~~~ 213 (285)
T TIGR00674 184 DDALTLPMMALGGKGVISVTANVAPKLMKE 213 (285)
T ss_pred chHHHHHHHHcCCCEEEehHHHhhHHHHHH
Confidence 224567788999999998776554444433
No 367
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=95.29 E-value=0.061 Score=51.65 Aligned_cols=104 Identities=20% Similarity=0.208 Sum_probs=65.8
Q ss_pred CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHH
Q 020636 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (323)
Q Consensus 123 ~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (323)
-|.++.|-+..+.+.+.++++.++++|+++|.++=..+. +. ++.. + ...+ ..+.+ .+..
T Consensus 212 ~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~---~~-~~~~----~---~~~~----~~gg~---SG~~--- 270 (344)
T PRK05286 212 VPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLS---RD-GLKG----L---PNAD----EAGGL---SGRP--- 270 (344)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccc---cc-cccc----c---ccCC----CCCCc---ccHH---
Confidence 478888876555556788889999999999987632211 00 1100 0 0000 00000 0000
Q ss_pred HHhhccCCccCHHHHHHHHHhc--CCCEE-EeccCCHHHHHHHHHcCCCEEEEc
Q 020636 203 YVAGQIDRSLSWKDVKWLQTIT--KLPIL-VKGVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 203 ~~~~~~~~~~~~~~i~~i~~~~--~~pv~-vK~i~~~e~a~~~~~~Gad~i~vs 253 (323)
.....|+.++.+++.. ++||+ +.|+.+.++|...+.+|||.|.+.
T Consensus 271 ------~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~ 318 (344)
T PRK05286 271 ------LFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIY 318 (344)
T ss_pred ------HHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHH
Confidence 0123678899999888 68887 567899999999999999999763
No 368
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=95.27 E-value=0.16 Score=47.59 Aligned_cols=83 Identities=11% Similarity=0.039 Sum_probs=54.8
Q ss_pred HHHHHHcC-CCEEEEcCCCCCCCCCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEcccc
Q 020636 239 ARIAVQAG-AAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMP 312 (323)
Q Consensus 239 a~~~~~~G-ad~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~ 312 (323)
++.+.+.| +|+|.+.++.|....-... -.+++..+++.+.+++||++.=|-.+-.|.++ +-.+|||+|++..++
T Consensus 27 i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~ 106 (290)
T TIGR00683 27 IRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPF 106 (290)
T ss_pred HHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 45677899 9999998876643221111 23455556666667899988655445555554 334899999999888
Q ss_pred ccCcchhhh
Q 020636 313 CQCPLTEKI 321 (323)
Q Consensus 313 ~~~~~~~~~ 321 (323)
...+..+++
T Consensus 107 y~~~~~~~i 115 (290)
T TIGR00683 107 YYKFSFPEI 115 (290)
T ss_pred CCCCCHHHH
Confidence 777665543
No 369
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=95.20 E-value=0.12 Score=49.33 Aligned_cols=104 Identities=24% Similarity=0.233 Sum_probs=64.8
Q ss_pred CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHH
Q 020636 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (323)
Q Consensus 123 ~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (323)
.|.++.|-+..+.+.+.++++.++++|+++|.++-.... . +. ..-|. ... . .+.-++.
T Consensus 203 ~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~--~---~~---~~~~~---~~~----~-----~gG~sG~-- 260 (327)
T cd04738 203 VPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTIS--R---PG---LLRSP---LAN----E-----TGGLSGA-- 260 (327)
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCccc--c---cc---ccccc---ccC----C-----CCccCCh--
Confidence 478888865455556778889999999999987632211 0 00 00000 000 0 0000000
Q ss_pred HHhhccCCccCHHHHHHHHHhc--CCCEE-EeccCCHHHHHHHHHcCCCEEEEc
Q 020636 203 YVAGQIDRSLSWKDVKWLQTIT--KLPIL-VKGVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 203 ~~~~~~~~~~~~~~i~~i~~~~--~~pv~-vK~i~~~e~a~~~~~~Gad~i~vs 253 (323)
......|+.++.+++.+ ++||+ +.|+.+.+|+.+++.+|||.|.+.
T Consensus 261 -----~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg 309 (327)
T cd04738 261 -----PLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLY 309 (327)
T ss_pred -----hhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhcc
Confidence 01113578899999988 68877 557899999999999999999773
No 370
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=95.19 E-value=0.78 Score=42.16 Aligned_cols=90 Identities=26% Similarity=0.336 Sum_probs=56.4
Q ss_pred HHHHHHHhcCCCEEEecc--CCHHH----HHHHHHcCCCEEEEcCCCCCCCCCC--cchHHHHHHHHHHhcCCCeEEEe-
Q 020636 216 DVKWLQTITKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVFLD- 286 (323)
Q Consensus 216 ~i~~i~~~~~~pv~vK~i--~~~e~----a~~~~~~Gad~i~vs~~gg~~~~~~--~~~~~~l~~i~~~~~~~~pvia~- 286 (323)
.++++.+ ++.||.+|-- .++++ ++.+...|-.-|++.-+|-+ .... ..++..++.+++ . ..|||+|
T Consensus 116 LL~a~g~-t~kpV~lKrG~~~t~~e~~~aaeyi~~~Gn~~vilcERG~t-f~y~r~~~D~~~vp~~k~-~--~lPVi~Dp 190 (264)
T PRK05198 116 LLVAAAK-TGKVVNIKKGQFLAPWDMKNVVDKVREAGNDKIILCERGTS-FGYNNLVVDMRGLPIMRE-T--GAPVIFDA 190 (264)
T ss_pred HHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCC-cCCCCeeechhhhHHHhh-C--CCCEEEeC
Confidence 3444433 4667777732 56665 56777888888988777642 2111 234556666654 3 4899996
Q ss_pred --------------cCCCCHHH--HHHHHHcCCCEEEEcc
Q 020636 287 --------------GGVRRGTD--VFKALALGASGIFVSI 310 (323)
Q Consensus 287 --------------GGI~~~~d--i~kal~lGAd~V~iG~ 310 (323)
||-|.--- ...|+++|||++++=.
T Consensus 191 SHsvq~pg~~~~~s~G~r~~v~~la~AAvA~GadGl~iEv 230 (264)
T PRK05198 191 THSVQLPGGQGGSSGGQREFVPVLARAAVAVGVAGLFIET 230 (264)
T ss_pred CccccCCCCCCCCCCCcHHHHHHHHHHHHHcCCCEEEEEe
Confidence 55544322 3367889999999964
No 371
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=95.18 E-value=0.79 Score=41.97 Aligned_cols=90 Identities=23% Similarity=0.330 Sum_probs=57.0
Q ss_pred HHHHHHHhcCCCEEEecc--CCHHH----HHHHHHcCCCEEEEcCCCCCCCCCC--cchHHHHHHHHHHhcCCCeEEEe-
Q 020636 216 DVKWLQTITKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVFLD- 286 (323)
Q Consensus 216 ~i~~i~~~~~~pv~vK~i--~~~e~----a~~~~~~Gad~i~vs~~gg~~~~~~--~~~~~~l~~i~~~~~~~~pvia~- 286 (323)
.++.+.+ ++.||.+|-- .++++ ++.+...|-+.|++.-+|-+ .... ..++..++.+++ . ..|||+|
T Consensus 108 LL~a~g~-t~kpV~lKrG~~~t~~e~l~aaeyi~~~Gn~~viLcERG~t-f~y~r~~~D~~~ip~~k~-~--~~PVi~Dp 182 (258)
T TIGR01362 108 LLVAAAK-TGRIVNVKKGQFLSPWDMKNVVEKVLSTGNKNILLCERGTS-FGYNNLVVDMRSLPIMRE-L--GCPVIFDA 182 (258)
T ss_pred HHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCcEEEEeCCCC-cCCCCcccchhhhHHHHh-c--CCCEEEeC
Confidence 3444433 4667777732 56655 66777889999998877642 2111 234556666655 3 5899996
Q ss_pred --------------cCCCCHHH--HHHHHHcCCCEEEEcc
Q 020636 287 --------------GGVRRGTD--VFKALALGASGIFVSI 310 (323)
Q Consensus 287 --------------GGI~~~~d--i~kal~lGAd~V~iG~ 310 (323)
||.|.--- ...|+++|||+++|=.
T Consensus 183 SHsvq~pg~~g~~s~G~r~~v~~la~AAvA~GaDGl~iEv 222 (258)
T TIGR01362 183 THSVQQPGGLGGASGGLREFVPTLARAAVAVGIDGLFMET 222 (258)
T ss_pred CccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCEEEEEe
Confidence 55554322 3357889999999965
No 372
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=95.16 E-value=0.14 Score=45.46 Aligned_cols=74 Identities=24% Similarity=0.280 Sum_probs=48.3
Q ss_pred cCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEe-----cCCCCH--------HHHHHHH
Q 020636 233 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD-----GGVRRG--------TDVFKAL 299 (323)
Q Consensus 233 i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~-----GGI~~~--------~di~kal 299 (323)
+.+.+++..+.+.|||.|.+..+-. ..+-.|++..+..+++.. ++||.+. |++... .|+..+.
T Consensus 7 v~s~~~a~~A~~~GAdRiELc~~l~--~GGlTPS~g~i~~~~~~~--~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~ 82 (201)
T PF03932_consen 7 VESLEDALAAEAGGADRIELCSNLE--VGGLTPSLGLIRQAREAV--DIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLR 82 (201)
T ss_dssp ESSHHHHHHHHHTT-SEEEEEBTGG--GT-B---HHHHHHHHHHT--TSEEEEE--SSSS-S---HHHHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHcCCCEEEECCCcc--CCCcCcCHHHHHHHHhhc--CCceEEEECCCCCCccCCHHHHHHHHHHHHHHH
Confidence 3689999999999999999864211 123357888999988877 7888874 333322 4677788
Q ss_pred HcCCCEEEEcc
Q 020636 300 ALGASGIFVSI 310 (323)
Q Consensus 300 ~lGAd~V~iG~ 310 (323)
.+|||++.+|-
T Consensus 83 ~~GadG~VfG~ 93 (201)
T PF03932_consen 83 ELGADGFVFGA 93 (201)
T ss_dssp HTT-SEEEE--
T ss_pred HcCCCeeEEEe
Confidence 89999999993
No 373
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=95.11 E-value=0.16 Score=47.18 Aligned_cols=96 Identities=21% Similarity=0.205 Sum_probs=63.2
Q ss_pred HHHHHHHHhcCCCEEEe---ccCCHHHHHHHHHcC-CCEEEEcCCCCCCCCCCcchHHHHHHHHHHh----cCCCeEEEe
Q 020636 215 KDVKWLQTITKLPILVK---GVLTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKAT----QGRIPVFLD 286 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~vK---~i~~~e~a~~~~~~G-ad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~----~~~~pvia~ 286 (323)
+.++.+++..+.+...+ .+.+.+++..+.++| +|+|-+.+.+...+ .+....+ +..+++ ..++-++++
T Consensus 170 ~a~~~~~~~~~~~~~~~idve~~~~~~~~~~~~~~~~d~irlDs~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~i~~S 245 (281)
T cd00516 170 AAVKALRRWLPELFIALIDVEVDTLEEALEAAKAGGADGIRLDSGSPEEL---DPAVLIL-KARAHLDGKGLPRVKIEAS 245 (281)
T ss_pred HHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHhcCCCCEEEeCCCChHHH---HHHHHHH-HHHHhhhhcCCCceEEEEe
Confidence 45677777654223444 236689999999999 99998766432110 1111111 111111 136789999
Q ss_pred cCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 287 GGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 287 GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
|||. .+.+......|.|.+++|+.+...
T Consensus 246 ggi~-~~~i~~~~~~gvd~~gvG~~~~~~ 273 (281)
T cd00516 246 GGLD-EENIRAYAETGVDVFGVGTLLHSA 273 (281)
T ss_pred CCCC-HHHHHHHHHcCCCEEEeCcccccC
Confidence 9997 888888888999999999988766
No 374
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=95.10 E-value=0.73 Score=42.28 Aligned_cols=87 Identities=21% Similarity=0.217 Sum_probs=61.0
Q ss_pred CHHHHHHHHHhcC--CCEEEec--cCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 213 SWKDVKWLQTITK--LPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~~--~pv~vK~--i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
..+.++.+|+.++ .++.+.. ..+.++| +.+.+.|.+.|.--- .+..++.+.++.+.+ ++||.
T Consensus 115 d~~~v~~vr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEeP~--------~~~d~~~~~~l~~~~--~ipia 184 (265)
T cd03315 115 DVAVVAALREAVGDDAELRVDANRGWTPKQAIRALRALEDLGLDYVEQPL--------PADDLEGRAALARAT--DTPIM 184 (265)
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHHHHHHHhcCCCEEECCC--------CcccHHHHHHHHhhC--CCCEE
Confidence 3456778888763 4555542 2456665 455667877774311 123467778888776 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEc
Q 020636 285 LDGGVRRGTDVFKALALG-ASGIFVS 309 (323)
Q Consensus 285 a~GGI~~~~di~kal~lG-Ad~V~iG 309 (323)
+++.+.+..|+.++++.+ +|.|++-
T Consensus 185 ~dE~~~~~~~~~~~i~~~~~d~v~~k 210 (265)
T cd03315 185 ADESAFTPHDAFRELALGAADAVNIK 210 (265)
T ss_pred ECCCCCCHHHHHHHHHhCCCCEEEEe
Confidence 999999999999999876 8999884
No 375
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=95.06 E-value=1.9 Score=39.96 Aligned_cols=187 Identities=17% Similarity=0.162 Sum_probs=105.3
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCceee--c---CCCCCCHHHHH-------hcCC--CceeEEeeecCChHH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------STGP--GIRFFQLYVYKDRNV 137 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~s~~~~eei~-------~~~~--~~~~~QLy~~~d~~~ 137 (323)
.|..+.|+.-.+-.+.++-....+-+.+.|+-.++ + ++.+.+.+|.. +... -+.+++... .+.+.
T Consensus 5 ~~~~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~ 83 (284)
T cd00950 5 ITALVTPFKDDGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGS-NNTAE 83 (284)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCC-ccHHH
Confidence 46677787544444555556788888888875443 2 22345555532 2222 245666542 35667
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHH
Q 020636 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (323)
Q Consensus 138 ~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (323)
+.++++.++++|++++++.- |... + + ..+-..+..
T Consensus 84 ~~~~a~~a~~~G~d~v~~~~--P~~~------------~--------------~-----------------~~~~l~~~~ 118 (284)
T cd00950 84 AIELTKRAEKAGADAALVVT--PYYN------------K--------------P-----------------SQEGLYAHF 118 (284)
T ss_pred HHHHHHHHHHcCCCEEEEcc--cccC------------C--------------C-----------------CHHHHHHHH
Confidence 77888999999999988641 2210 0 0 000113345
Q ss_pred HHHHHhcCCCEEEecc-------CCHHHHHHHHHcC-CCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCC
Q 020636 218 KWLQTITKLPILVKGV-------LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (323)
Q Consensus 218 ~~i~~~~~~pv~vK~i-------~~~e~a~~~~~~G-ad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI 289 (323)
+.+.+..++|+++=.. .+++..+++.+.. +-+|.-+ . .+...+.++.+..++++.|+ +|.
T Consensus 119 ~~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~~p~v~giK~s---------~-~~~~~~~~~~~~~~~~~~v~-~G~- 186 (284)
T cd00950 119 KAIAEATDLPVILYNVPGRTGVNIEPETVLRLAEHPNIVGIKEA---------T-GDLDRVSELIALCPDDFAVL-SGD- 186 (284)
T ss_pred HHHHhcCCCCEEEEEChhHhCCCCCHHHHHHHhcCCCEEEEEEC---------C-CCHHHHHHHHHhCCCCeEEE-eCC-
Confidence 5566667888886632 5677777777542 2222211 1 13344455555554455444 342
Q ss_pred CCHHHHHHHHHcCCCEEEEccccccCcch
Q 020636 290 RRGTDVFKALALGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 290 ~~~~di~kal~lGAd~V~iG~~~~~~~~~ 318 (323)
...+..++.+|+++.+.|..-+....+
T Consensus 187 --d~~~~~~~~~G~~G~~s~~~n~~p~~~ 213 (284)
T cd00950 187 --DALTLPFLALGGVGVISVAANVAPKLM 213 (284)
T ss_pred --hHhHHHHHHCCCCEEEehHHHhhHHHH
Confidence 244667788999999888764444433
No 376
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=95.01 E-value=0.16 Score=47.28 Aligned_cols=83 Identities=23% Similarity=0.315 Sum_probs=55.1
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHH----HcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL----ALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal----~lGAd~V~iG~~~~ 313 (323)
++.+.+.|+|++.+.++.|....-... -.+++..+.+.+++++|||+.=|-.+-.++++.. .+|||++++..++.
T Consensus 28 i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P~~ 107 (289)
T PF00701_consen 28 IDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPPYY 107 (289)
T ss_dssp HHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEESTS
T ss_pred HHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEecccc
Confidence 556778999999998776642211111 2345555666677789999866665666665433 48999999998887
Q ss_pred cCcchhhh
Q 020636 314 QCPLTEKI 321 (323)
Q Consensus 314 ~~~~~~~~ 321 (323)
..+..+.+
T Consensus 108 ~~~s~~~l 115 (289)
T PF00701_consen 108 FKPSQEEL 115 (289)
T ss_dssp SSCCHHHH
T ss_pred ccchhhHH
Confidence 77665544
No 377
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=95.01 E-value=0.17 Score=46.13 Aligned_cols=74 Identities=24% Similarity=0.277 Sum_probs=55.2
Q ss_pred cCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEE-----ecCCCCH--------HHHHHHH
Q 020636 233 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL-----DGGVRRG--------TDVFKAL 299 (323)
Q Consensus 233 i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia-----~GGI~~~--------~di~kal 299 (323)
+.+.+++..|.+.|||.|.+...- ...|..|++.++..+++.+ ++||.+ .|++... .|+..+.
T Consensus 8 v~s~~~a~~A~~~GAdRiELc~~L--~~GGlTPS~g~i~~~~~~~--~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~ 83 (248)
T PRK11572 8 CYSMECALTAQQAGADRIELCAAP--KEGGLTPSLGVLKSVRERV--TIPVHPIIRPRGGDFCYSDGEFAAMLEDIATVR 83 (248)
T ss_pred ECCHHHHHHHHHcCCCEEEEccCc--CCCCcCCCHHHHHHHHHhc--CCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Confidence 378999999999999999986421 1223357888899988877 788877 3444332 4667777
Q ss_pred HcCCCEEEEcc
Q 020636 300 ALGASGIFVSI 310 (323)
Q Consensus 300 ~lGAd~V~iG~ 310 (323)
.+|||+|.+|-
T Consensus 84 ~~GadGvV~G~ 94 (248)
T PRK11572 84 ELGFPGLVTGV 94 (248)
T ss_pred HcCCCEEEEee
Confidence 79999999993
No 378
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=95.00 E-value=0.4 Score=44.38 Aligned_cols=96 Identities=23% Similarity=0.395 Sum_probs=62.5
Q ss_pred HHHHHHHHHhcCCCEEEecc-C-CHHHH----HHHHHcCCCEEEEcCCCCCCCC-CCc--chHHHHHHHHHHhcCCCeEE
Q 020636 214 WKDVKWLQTITKLPILVKGV-L-TAEDA----RIAVQAGAAGIIVSNHGARQLD-YVP--ATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK~i-~-~~e~a----~~~~~~Gad~i~vs~~gg~~~~-~~~--~~~~~l~~i~~~~~~~~pvi 284 (323)
.+.++++ ..++.||++|-- . +.++. +.+...|-.-+.+.-.|++... ... ..+..++.+++.. ..||+
T Consensus 124 ~~LL~~~-a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~~--~~pV~ 200 (266)
T PRK13398 124 FELLKEV-GKTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVAVIKELS--HLPII 200 (266)
T ss_pred HHHHHHH-hcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhcc--CCCEE
Confidence 4566666 456899999943 3 77774 4445678877777655554332 112 2345566666555 68999
Q ss_pred EecCCCC------HHHHHHHHHcCCCEEEEcccc
Q 020636 285 LDGGVRR------GTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 285 a~GGI~~------~~di~kal~lGAd~V~iG~~~ 312 (323)
.|..=.. ......|+++||++++|-+.+
T Consensus 201 ~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~ 234 (266)
T PRK13398 201 VDPSHATGRRELVIPMAKAAIAAGADGLMIEVHP 234 (266)
T ss_pred EeCCCcccchhhHHHHHHHHHHcCCCEEEEeccC
Confidence 9543222 567778899999999998766
No 379
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=95.00 E-value=0.25 Score=46.28 Aligned_cols=154 Identities=25% Similarity=0.296 Sum_probs=85.9
Q ss_pred cccceEECcccccccCCcHHHHHHHHHHHHcC-Ccee-e--cC----C-C---CCC-------HHHHHhcCCCceeEEee
Q 020636 70 ISMPIMIAPTAMQKMAHPEGEYATARAASAAG-TIMT-L--SS----W-S---TSS-------VEEVASTGPGIRFFQLY 130 (323)
Q Consensus 70 ~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G-~~~~-v--s~----~-s---~~~-------~eei~~~~~~~~~~QLy 130 (323)
+..|++++=++. +++.=...|+.++++| ..++ + |. . . ... ++.+++...-+.++.+-
T Consensus 90 ~~~p~i~si~g~----~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~ 165 (301)
T PRK07259 90 FDTPIIANVAGS----TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLT 165 (301)
T ss_pred cCCcEEEEeccC----CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 357877764332 3443357777888887 5444 3 10 0 0 011 22233333456777764
Q ss_pred ecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCC
Q 020636 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 210 (323)
Q Consensus 131 ~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (323)
.+.+.+.+++++++++|++++.++ ++- .|.+ .+.+... | .+ . ...+ + ++.....
T Consensus 166 --~~~~~~~~~a~~l~~~G~d~i~~~-nt~-~g~~-~~~~~~~--~-~~--~----~~~g--------g----~sg~~~~ 219 (301)
T PRK07259 166 --PNVTDIVEIAKAAEEAGADGLSLI-NTL-KGMA-IDIKTRK--P-IL--A----NVTG--------G----LSGPAIK 219 (301)
T ss_pred --CCchhHHHHHHHHHHcCCCEEEEE-ccc-cccc-cccccCc--e-ee--c----CCcC--------c----cCCcCcc
Confidence 244566778889999999988763 211 1110 0111000 0 00 0 0000 0 0000112
Q ss_pred ccCHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 211 SLSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 211 ~~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
...++.++++++.+++||+.- ++.+.+++.+++.+|||.|.+.
T Consensus 220 p~~l~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aGAd~V~ig 263 (301)
T PRK07259 220 PIALRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAGASAVQVG 263 (301)
T ss_pred cccHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCceeEc
Confidence 246888999999889998754 6789999999999999999873
No 380
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=94.99 E-value=0.31 Score=43.38 Aligned_cols=40 Identities=25% Similarity=0.398 Sum_probs=36.2
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEE
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIV 252 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~v 252 (323)
+.+.++.+++.++.|+++. |+.+.|+++.+.++|||+|++
T Consensus 164 ~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~GAD~VVV 204 (205)
T TIGR01769 164 NPETISLVKKASGIPLIVGGGIRSPEIAYEIVLAGADAIVT 204 (205)
T ss_pred CHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcCCCEEEe
Confidence 4678999999999999999 579999999999999999987
No 381
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=94.99 E-value=3.2 Score=39.00 Aligned_cols=187 Identities=17% Similarity=0.144 Sum_probs=103.7
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCceee--c---CCCCCCHHHHH-------hcCC--CceeEEeeecCChHH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------STGP--GIRFFQLYVYKDRNV 137 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~s~~~~eei~-------~~~~--~~~~~QLy~~~d~~~ 137 (323)
.|.++.|+.-.+-.+.++-..+.+-..+.|+-.++ + ++.+.+.||-. +... -+.+.+.- . +-+.
T Consensus 12 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~-~-~t~~ 89 (303)
T PRK03620 12 LSFPVTPFDADGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG-G-GTAQ 89 (303)
T ss_pred EEeeeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-C-CHHH
Confidence 57888887654434555555777788888875442 2 23445555532 2222 34566663 3 6667
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHH
Q 020636 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (323)
Q Consensus 138 ~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (323)
..++++.++++|++++.+.- |.... + ...+ ..+..
T Consensus 90 ~i~~~~~a~~~Gadav~~~p--P~y~~-----------~-------------------~~~~-------------i~~~f 124 (303)
T PRK03620 90 AIEYAQAAERAGADGILLLP--PYLTE-----------A-------------------PQEG-------------LAAHV 124 (303)
T ss_pred HHHHHHHHHHhCCCEEEECC--CCCCC-----------C-------------------CHHH-------------HHHHH
Confidence 77888999999999998642 32100 0 0001 12334
Q ss_pred HHHHHhcCCCEEEec----cCCHHHHHHHH-HcC-CCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 020636 218 KWLQTITKLPILVKG----VLTAEDARIAV-QAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (323)
Q Consensus 218 ~~i~~~~~~pv~vK~----i~~~e~a~~~~-~~G-ad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~ 291 (323)
+.+.+.+++||++=. ..+++...++. +.. +-+|.-+ ..++..+.++.+..+++..|+ +| ..+
T Consensus 125 ~~va~~~~lpi~lYn~~g~~l~~~~l~~L~~~~pni~giK~s----------~~d~~~~~~~~~~~~~~f~vl-~G-~d~ 192 (303)
T PRK03620 125 EAVCKSTDLGVIVYNRDNAVLTADTLARLAERCPNLVGFKDG----------VGDIELMQRIVRALGDRLLYL-GG-LPT 192 (303)
T ss_pred HHHHHhCCCCEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEeC----------CCCHHHHHHHHHHcCCCeEEE-eC-CCc
Confidence 556666788877652 25677777776 432 2222222 123444555555554445444 33 221
Q ss_pred H-HHHHHHHHcCCCEEEEccccccCcc
Q 020636 292 G-TDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 292 ~-~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
. .-+..++.+||++...|..-+....
T Consensus 193 ~e~~~~~~~~~G~~G~is~~an~~P~~ 219 (303)
T PRK03620 193 AEVFAAAYLALGVPTYSSAVFNFVPEI 219 (303)
T ss_pred chhhHHHHHhCCCCEEEecHHhhhHHH
Confidence 2 2345567899999887765444333
No 382
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=94.97 E-value=3.2 Score=38.84 Aligned_cols=187 Identities=16% Similarity=0.131 Sum_probs=104.7
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCceee--cC---CCCCCHHHHH-------hcCC--CceeEEeeecCChHH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------STGP--GIRFFQLYVYKDRNV 137 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s~---~s~~~~eei~-------~~~~--~~~~~QLy~~~d~~~ 137 (323)
.|.++.|+.-.+-.+.++-..+.+-..+.|+-.++ ++ +.+.+.||.. +... -+.+++.- .+-+.
T Consensus 10 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~--~~t~~ 87 (296)
T TIGR03249 10 LSFPVTPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG--GNTSD 87 (296)
T ss_pred EEeeeCCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--ccHHH
Confidence 47778887544334555556788888888865442 33 3345555532 2222 35677764 34666
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHH
Q 020636 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (323)
Q Consensus 138 ~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (323)
..++++.++++|++++.+.- |... + + ...+ ..+..
T Consensus 88 ai~~a~~a~~~Gadav~~~p--P~y~------------~--------------~----s~~~-------------i~~~f 122 (296)
T TIGR03249 88 AIEIARLAEKAGADGYLLLP--PYLI------------N--------------G----EQEG-------------LYAHV 122 (296)
T ss_pred HHHHHHHHHHhCCCEEEECC--CCCC------------C--------------C----CHHH-------------HHHHH
Confidence 67788888999999998642 3210 0 0 0001 12344
Q ss_pred HHHHHhcCCCEEEec----cCCHHHHHHHHH-c-CCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCC-
Q 020636 218 KWLQTITKLPILVKG----VLTAEDARIAVQ-A-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR- 290 (323)
Q Consensus 218 ~~i~~~~~~pv~vK~----i~~~e~a~~~~~-~-Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~- 290 (323)
+.+.+.+++|+++=. -.+++...++.+ . .+-+|.-+ ..++..+.++.+..++++.|+. |-.
T Consensus 123 ~~v~~a~~~pvilYn~~g~~l~~~~~~~La~~~~nvvgiKds----------~~d~~~~~~~~~~~~~~~~v~~--G~~~ 190 (296)
T TIGR03249 123 EAVCESTDLGVIVYQRDNAVLNADTLERLADRCPNLVGFKDG----------IGDMEQMIEITQRLGDRLGYLG--GMPT 190 (296)
T ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHhhCCCEEEEEeC----------CCCHHHHHHHHHHcCCCeEEEe--CCCc
Confidence 556666778877652 257787777765 2 23333322 1244555555555544443333 322
Q ss_pred CHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 291 RGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
.-..++..+.+||++++-|..=+....
T Consensus 191 ~d~~~~~~~~~Ga~G~is~~~n~~P~~ 217 (296)
T TIGR03249 191 AEVTAPAYLPLGVTSYSSAIFNFIPHI 217 (296)
T ss_pred chhhHHHHHhCCCCEEEecHHHhhHHH
Confidence 123456778899999987754333333
No 383
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=94.95 E-value=0.43 Score=44.04 Aligned_cols=97 Identities=24% Similarity=0.389 Sum_probs=62.7
Q ss_pred CHHHHHHHHHhcCCCEEEecc-C-CHHHH----HHHHHcCCCEEEEcCCCCCCCCC---CcchHHHHHHHHHHhcCCCeE
Q 020636 213 SWKDVKWLQTITKLPILVKGV-L-TAEDA----RIAVQAGAAGIIVSNHGARQLDY---VPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~i-~-~~e~a----~~~~~~Gad~i~vs~~gg~~~~~---~~~~~~~l~~i~~~~~~~~pv 283 (323)
+...++.+.+ ++.||++|-- . +.++. ..+.+.|.+-|++.-+|-+..+. -...+..+..+++.. .+||
T Consensus 121 n~~LL~~~a~-~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~--~~pV 197 (260)
T TIGR01361 121 NFELLKEVGK-QGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKET--HLPI 197 (260)
T ss_pred CHHHHHHHhc-CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhh--CCCE
Confidence 3456666644 6899999943 4 67774 44456888777764433322211 234677788887766 6999
Q ss_pred EEe----cCCCC--HHHHHHHHHcCCCEEEEcccc
Q 020636 284 FLD----GGVRR--GTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 284 ia~----GGI~~--~~di~kal~lGAd~V~iG~~~ 312 (323)
+.| +|.|. ..-...|+++||++++|-+.|
T Consensus 198 ~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~ 232 (260)
T TIGR01361 198 IVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHP 232 (260)
T ss_pred EEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCC
Confidence 994 33222 334457888999999998766
No 384
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=94.89 E-value=0.31 Score=44.33 Aligned_cols=83 Identities=30% Similarity=0.384 Sum_probs=56.6
Q ss_pred CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCC----CCCCCCcchH----HHHHHHHHHhcCCCeEEEec--CCCC-HH
Q 020636 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGA----RQLDYVPATI----MALEEVVKATQGRIPVFLDG--GVRR-GT 293 (323)
Q Consensus 225 ~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg----~~~~~~~~~~----~~l~~i~~~~~~~~pvia~G--GI~~-~~ 293 (323)
+.|+++-++.+.-.|+.+.++|++++.+|+++- ...|.+.-++ +.+.+|.+.+ ++||++|+ |..+ +.
T Consensus 8 ~~~l~~p~~~D~~SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~--~iPv~vD~d~GyG~~~~ 85 (238)
T PF13714_consen 8 GKPLVLPNVWDALSARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAV--SIPVIVDADTGYGNDPE 85 (238)
T ss_dssp SSSEEEEEESSHHHHHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHS--SSEEEEE-TTTSSSSHH
T ss_pred CCcEEeCCCcCHHHHHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhh--cCcEEEEcccccCchhH
Confidence 368999999999999999999999999987541 1245443333 3455566666 89999986 7666 43
Q ss_pred H----HHHHHHcCCCEEEEc
Q 020636 294 D----VFKALALGASGIFVS 309 (323)
Q Consensus 294 d----i~kal~lGAd~V~iG 309 (323)
. +.+..++|+.++.|-
T Consensus 86 ~v~~tv~~~~~aG~agi~IE 105 (238)
T PF13714_consen 86 NVARTVRELERAGAAGINIE 105 (238)
T ss_dssp HHHHHHHHHHHCT-SEEEEE
T ss_pred HHHHHHHHHHHcCCcEEEee
Confidence 3 345556899999984
No 385
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=94.89 E-value=1.8 Score=37.87 Aligned_cols=129 Identities=18% Similarity=0.107 Sum_probs=77.2
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEec-CCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCC
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTV-DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 210 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itv-d~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (323)
..|.....+.++++.++|++.+-+.+ |.+.. | ..
T Consensus 8 ~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~-------------~--------------------------------~~ 42 (211)
T cd00429 8 SADFANLGEELKRLEEAGADWIHIDVMDGHFV-------------P--------------------------------NL 42 (211)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecccCCCC-------------C--------------------------------cc
Confidence 45777778889999999998876531 10100 0 01
Q ss_pred ccCHHHHHHHHHhcCCCEEEec--cCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecC
Q 020636 211 SLSWKDVKWLQTITKLPILVKG--VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (323)
Q Consensus 211 ~~~~~~i~~i~~~~~~pv~vK~--i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GG 288 (323)
.+..+.++++++.++.|+.+.. -...+.++.+.++|+|+|.+ |++.. ....+.++.+.+ . .+.+..+-+
T Consensus 43 ~~~~~~~~~i~~~~~~~~~v~l~~~d~~~~~~~~~~~g~dgv~v--h~~~~----~~~~~~~~~~~~-~--~~~~g~~~~ 113 (211)
T cd00429 43 TFGPPVVKALRKHTDLPLDVHLMVENPERYIEAFAKAGADIITF--HAEAT----DHLHRTIQLIKE-L--GMKAGVALN 113 (211)
T ss_pred ccCHHHHHHHHhhCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEE--Cccch----hhHHHHHHHHHH-C--CCeEEEEec
Confidence 1345678888876655654432 23345688888999999988 44311 122333443332 2 455555545
Q ss_pred CCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 289 VRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 289 I~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
-.+..+..+.+..++|.+.++..+.+
T Consensus 114 ~~~~~~~~~~~~~~~d~i~~~~~~~g 139 (211)
T cd00429 114 PGTPVEVLEPYLDEVDLVLVMSVNPG 139 (211)
T ss_pred CCCCHHHHHHHHhhCCEEEEEEECCC
Confidence 55566667777777999988765433
No 386
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=94.89 E-value=0.19 Score=49.54 Aligned_cols=111 Identities=22% Similarity=0.262 Sum_probs=64.6
Q ss_pred CCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhH
Q 020636 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 201 (323)
Q Consensus 122 ~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (323)
.-|.++.|-+ +...+.++++.++++|+++++++ ++-. +.-.-|++..-..| . +. +....+.-+|
T Consensus 168 ~~Pv~vKl~p--~~~~~~~~a~~~~~~Gadgi~~~-Nt~~-~~~~id~~~~~~~p-~-----~~----~~~~~gg~SG-- 231 (420)
T PRK08318 168 RLPVIVKLTP--NITDIREPARAAKRGGADAVSLI-NTIN-SITGVDLDRMIPMP-I-----VN----GKSSHGGYCG-- 231 (420)
T ss_pred CCcEEEEcCC--CcccHHHHHHHHHHCCCCEEEEe-cccC-ccccccccccCCCc-e-----ec----CCCCcccccc--
Confidence 3578888864 33346788888999999998853 2211 10001111000000 0 00 0000000000
Q ss_pred HHHhhccCCccCHHHHHHHHHhc---CCCEE-EeccCCHHHHHHHHHcCCCEEEEc
Q 020636 202 AYVAGQIDRSLSWKDVKWLQTIT---KLPIL-VKGVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~i~~~~---~~pv~-vK~i~~~e~a~~~~~~Gad~i~vs 253 (323)
.......|+.|.++++.+ ++||+ +.||.+.+||...+.+|||+|.+.
T Consensus 232 -----~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ 282 (420)
T PRK08318 232 -----PAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVC 282 (420)
T ss_pred -----hhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheee
Confidence 001224688999999886 68876 557899999999999999999874
No 387
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=94.87 E-value=0.25 Score=46.15 Aligned_cols=82 Identities=16% Similarity=0.104 Sum_probs=53.5
Q ss_pred HHHHHHc-CCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEcccc
Q 020636 239 ARIAVQA-GAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMP 312 (323)
Q Consensus 239 a~~~~~~-Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~ 312 (323)
++.+.+. |+++|.+.++.|....-.. --.+++..+.+.+.+++|||+-=|-.+-.|+++ +..+|||+|++-.++
T Consensus 27 i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~P~ 106 (288)
T cd00954 27 VDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAITPF 106 (288)
T ss_pred HHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 4556778 9999999887764321111 123455556666667899998444444555443 345899999999888
Q ss_pred ccCcchhh
Q 020636 313 CQCPLTEK 320 (323)
Q Consensus 313 ~~~~~~~~ 320 (323)
...|..+.
T Consensus 107 y~~~~~~~ 114 (288)
T cd00954 107 YYKFSFEE 114 (288)
T ss_pred CCCCCHHH
Confidence 77665443
No 388
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=94.86 E-value=0.77 Score=45.77 Aligned_cols=84 Identities=19% Similarity=0.185 Sum_probs=53.7
Q ss_pred HHHHHHHHHhcCCC-EEE--eccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCC
Q 020636 214 WKDVKWLQTITKLP-ILV--KGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 214 ~~~i~~i~~~~~~p-v~v--K~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
.+.-..+....+.. ++| -|+.+++|++.+.+ |+|++-|.. .+-..+.....+.++.. ..+. -.|++
T Consensus 197 ~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~~~-~~davLiG~----~lm~~~d~~~~~~~L~~---~~vK---ICGit 265 (454)
T PRK09427 197 LNRTRELAPLIPADVIVISESGIYTHAQVRELSP-FANGFLIGS----SLMAEDDLELAVRKLIL---GENK---VCGLT 265 (454)
T ss_pred HHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHHHh-cCCEEEECH----HHcCCCCHHHHHHHHhc---cccc---cCCCC
Confidence 34444555554321 223 38899999999865 799998833 22222333444444422 1222 26899
Q ss_pred CHHHHHHHHHcCCCEEEE
Q 020636 291 RGTDVFKALALGASGIFV 308 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~i 308 (323)
+.+|+..+..+|||++++
T Consensus 266 ~~eda~~a~~~GaD~lGf 283 (454)
T PRK09427 266 RPQDAKAAYDAGAVYGGL 283 (454)
T ss_pred CHHHHHHHHhCCCCEEee
Confidence 999999999999999987
No 389
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=94.84 E-value=0.26 Score=45.91 Aligned_cols=82 Identities=21% Similarity=0.301 Sum_probs=54.9
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHH----HHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA----LALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~pvia~GGI~~~~di~ka----l~lGAd~V~iG~~~~ 313 (323)
+..+.+.|+|+|.+.++.|....-... -.+++..+.+.+.+++||++.=|-.+-.|.++. -.+|||+|++..++.
T Consensus 25 i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y 104 (285)
T TIGR00674 25 IDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTPYY 104 (285)
T ss_pred HHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCCcC
Confidence 455678999999997776643221111 234555566666778999986666666665543 347999999999887
Q ss_pred cCcchhh
Q 020636 314 QCPLTEK 320 (323)
Q Consensus 314 ~~~~~~~ 320 (323)
..+..+.
T Consensus 105 ~~~~~~~ 111 (285)
T TIGR00674 105 NKPTQEG 111 (285)
T ss_pred CCCCHHH
Confidence 7665443
No 390
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=94.83 E-value=0.55 Score=44.95 Aligned_cols=126 Identities=17% Similarity=0.174 Sum_probs=83.0
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccC
Q 020636 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (323)
Q Consensus 134 d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (323)
+++.+.+.++++.+.|++++=+.++...... ..+...
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~-------------------------------------------~~~~~d 175 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGG-------------------------------------------EDLRED 175 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcch-------------------------------------------HHHHHH
Confidence 4666667777777899998877654321000 012235
Q ss_pred HHHHHHHHHhc--CCCEEEec--cCCHHHHHHH----HHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEE
Q 020636 214 WKDVKWLQTIT--KLPILVKG--VLTAEDARIA----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (323)
Q Consensus 214 ~~~i~~i~~~~--~~pv~vK~--i~~~e~a~~~----~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia 285 (323)
.+.++.+|+.+ +.++.+.. ..+.++|... .+.+++.|.- . ..+..++.+.++++.+ ++||++
T Consensus 176 ~~~v~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEq-------P-~~~~~~~~~~~l~~~~--~ipi~~ 245 (357)
T cd03316 176 LARVRAVREAVGPDVDLMVDANGRWDLAEAIRLARALEEYDLFWFEE-------P-VPPDDLEGLARLRQAT--SVPIAA 245 (357)
T ss_pred HHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHhCccCCCeEcC-------C-CCccCHHHHHHHHHhC--CCCEEe
Confidence 66788899887 35677763 3567776544 3445554421 0 1123567788888776 799999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEEcccc
Q 020636 286 DGGVRRGTDVFKALALG-ASGIFVSIMP 312 (323)
Q Consensus 286 ~GGI~~~~di~kal~lG-Ad~V~iG~~~ 312 (323)
+..+.+..|+.+++..| +|.|.+--..
T Consensus 246 dE~~~~~~~~~~~i~~~~~d~v~~k~~~ 273 (357)
T cd03316 246 GENLYTRWEFRDLLEAGAVDIIQPDVTK 273 (357)
T ss_pred ccccccHHHHHHHHHhCCCCEEecCccc
Confidence 99999999999999876 8888775433
No 391
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=94.82 E-value=0.25 Score=46.30 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=53.8
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHH----HHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA----LALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~pvia~GGI~~~~di~ka----l~lGAd~V~iG~~~~ 313 (323)
++.+.+.|+|+|.+.++.|....-... -.+++..+.+.+.+++||++.=|- +-.+.++. -.+|||++++-.++.
T Consensus 32 i~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~-~t~~ai~~a~~a~~~Gadav~~~pP~y 110 (296)
T TIGR03249 32 IEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG-NTSDAIEIARLAEKAGADGYLLLPPYL 110 (296)
T ss_pred HHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc-cHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 456678999999998776643221211 234555566666778999987663 55555543 348999999988887
Q ss_pred cCcchhh
Q 020636 314 QCPLTEK 320 (323)
Q Consensus 314 ~~~~~~~ 320 (323)
..+..+.
T Consensus 111 ~~~s~~~ 117 (296)
T TIGR03249 111 INGEQEG 117 (296)
T ss_pred CCCCHHH
Confidence 6665443
No 392
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=94.79 E-value=0.24 Score=46.30 Aligned_cols=82 Identities=17% Similarity=0.185 Sum_probs=56.3
Q ss_pred HHHHHH-cCCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEcccc
Q 020636 239 ARIAVQ-AGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMP 312 (323)
Q Consensus 239 a~~~~~-~Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~ 312 (323)
++.+.+ .|+++|.+.++.|....-.. --.+++..+++.+++++|||+.=|-.+-.|+++ |-.+|||+|++-.++
T Consensus 30 i~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~ 109 (293)
T PRK04147 30 VRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPF 109 (293)
T ss_pred HHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 456678 99999999887764221111 123456666677777899999666666676654 345899999999988
Q ss_pred ccCcchhh
Q 020636 313 CQCPLTEK 320 (323)
Q Consensus 313 ~~~~~~~~ 320 (323)
...|..+.
T Consensus 110 y~~~~~~~ 117 (293)
T PRK04147 110 YYPFSFEE 117 (293)
T ss_pred CCCCCHHH
Confidence 77765443
No 393
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=94.79 E-value=0.15 Score=45.36 Aligned_cols=79 Identities=29% Similarity=0.336 Sum_probs=56.2
Q ss_pred CHHHHHHHHHhcCCCEEEe--ccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCC
Q 020636 213 SWKDVKWLQTITKLPILVK--GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK--~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
-.+.|+.+++..+ -+++. .++++++++.+.++|++.|+--| -+-+++..+. .. ++|++ =|+.
T Consensus 51 a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~----------~~~ev~~~a~-~~--~ip~~--PG~~ 114 (211)
T COG0800 51 ALEAIRALAKEFP-EALIGAGTVLNPEQARQAIAAGAQFIVSPG----------LNPEVAKAAN-RY--GIPYI--PGVA 114 (211)
T ss_pred HHHHHHHHHHhCc-ccEEccccccCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHH-hC--CCccc--CCCC
Confidence 3567999999876 34443 46999999999999999986422 1223333222 22 56665 4899
Q ss_pred CHHHHHHHHHcCCCEEE
Q 020636 291 RGTDVFKALALGASGIF 307 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~ 307 (323)
|+.++..|+++|++.+=
T Consensus 115 TptEi~~Ale~G~~~lK 131 (211)
T COG0800 115 TPTEIMAALELGASALK 131 (211)
T ss_pred CHHHHHHHHHcChhhee
Confidence 99999999999998764
No 394
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=94.78 E-value=0.17 Score=47.47 Aligned_cols=82 Identities=22% Similarity=0.378 Sum_probs=59.8
Q ss_pred CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCC-----CCCCCcchH----HHHHHHHHHhcCCCeEEEec--CCCCHH
Q 020636 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR-----QLDYVPATI----MALEEVVKATQGRIPVFLDG--GVRRGT 293 (323)
Q Consensus 225 ~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~-----~~~~~~~~~----~~l~~i~~~~~~~~pvia~G--GI~~~~ 293 (323)
+.|+++-++.+.-.|+.+.++|+++|.+|+++=. ..|.+.-++ +.+.+|.+.+ ++||++|+ |..++.
T Consensus 16 ~~~l~~p~~~Da~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~--~iPviaD~d~GyG~~~ 93 (292)
T PRK11320 16 EKPLQIVGTINAYHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDAC--DLPLLVDIDTGFGGAF 93 (292)
T ss_pred CCcEEecCCCCHHHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCHH
Confidence 4588888899999999999999999999876411 235443333 3444455555 79999975 777888
Q ss_pred HH----HHHHHcCCCEEEE
Q 020636 294 DV----FKALALGASGIFV 308 (323)
Q Consensus 294 di----~kal~lGAd~V~i 308 (323)
.+ .+...+||.++.|
T Consensus 94 ~v~r~V~~~~~aGaagi~I 112 (292)
T PRK11320 94 NIARTVKSMIKAGAAAVHI 112 (292)
T ss_pred HHHHHHHHHHHcCCeEEEE
Confidence 86 3445589999998
No 395
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=94.75 E-value=0.15 Score=46.06 Aligned_cols=74 Identities=20% Similarity=0.282 Sum_probs=56.7
Q ss_pred CHHH-HHH-HHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccc
Q 020636 235 TAED-ARI-AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 235 ~~e~-a~~-~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~ 312 (323)
+.++ ++. +...++|+|+++++. .+.+++.+.|..+++.. +.||++-.|+ +.+-+.+.|.. ||++.+||-|
T Consensus 164 ~~~~~v~dtver~~aDaVI~tG~~----TG~~~d~~el~~a~~~~--~~pvlvGSGv-~~eN~~~~l~~-adG~IvgT~l 235 (263)
T COG0434 164 SLEEAVKDTVERGLADAVIVTGSR----TGSPPDLEELKLAKEAV--DTPVLVGSGV-NPENIEELLKI-ADGVIVGTSL 235 (263)
T ss_pred CHHHHHHHHHHccCCCEEEEeccc----CCCCCCHHHHHHHHhcc--CCCEEEecCC-CHHHHHHHHHH-cCceEEEEEE
Confidence 4444 344 556889999998843 24578899999998887 6999999998 45667777776 9999999988
Q ss_pred ccCc
Q 020636 313 CQCP 316 (323)
Q Consensus 313 ~~~~ 316 (323)
-..-
T Consensus 236 K~~G 239 (263)
T COG0434 236 KKGG 239 (263)
T ss_pred ccCC
Confidence 6654
No 396
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=94.72 E-value=3.7 Score=38.33 Aligned_cols=190 Identities=16% Similarity=0.127 Sum_probs=106.0
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCcee--ecC---CCCCCHHHHH-------hcCC--CceeEEeeecCChHH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT--LSS---WSTSSVEEVA-------STGP--GIRFFQLYVYKDRNV 137 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~--vs~---~s~~~~eei~-------~~~~--~~~~~QLy~~~d~~~ 137 (323)
.|.++.|+.-.+-.+.++-..+.+-..+.|+..+ .++ +...+.||.. +... -+.+.+.. . +-+.
T Consensus 5 ~~a~vTPf~~dg~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~-~t~~ 82 (289)
T cd00951 5 LSFPVTHFDADGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG-Y-GTAT 82 (289)
T ss_pred EEEeecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC-C-CHHH
Confidence 3667788754433455555678888888887544 222 3345666532 2222 35566664 3 6667
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHH
Q 020636 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (323)
Q Consensus 138 ~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (323)
..+++++++++|++++.+.- |... + . +.+-..+..
T Consensus 83 ~i~~a~~a~~~Gad~v~~~p--P~y~------------~--~-----------------------------~~~~i~~~f 117 (289)
T cd00951 83 AIAYAQAAEKAGADGILLLP--PYLT------------E--A-----------------------------PQEGLYAHV 117 (289)
T ss_pred HHHHHHHHHHhCCCEEEECC--CCCC------------C--C-----------------------------CHHHHHHHH
Confidence 77888999999999998732 2210 0 0 000112345
Q ss_pred HHHHHhcCCCEEEec----cCCHHHHHHHHH-cCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH
Q 020636 218 KWLQTITKLPILVKG----VLTAEDARIAVQ-AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 292 (323)
Q Consensus 218 ~~i~~~~~~pv~vK~----i~~~e~a~~~~~-~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~ 292 (323)
+.+.+.+++|+++=. ..+++..+++.+ .. ..+.+= |. ..++..+.++.+..+++..|+ .|-.+.
T Consensus 118 ~~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~~~p-nivgiK-------ds-~~d~~~~~~~~~~~~~~~~v~--~G~~~~ 186 (289)
T cd00951 118 EAVCKSTDLGVIVYNRANAVLTADSLARLAERCP-NLVGFK-------DG-VGDIELMRRIVAKLGDRLLYL--GGLPTA 186 (289)
T ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHhcCC-CEEEEE-------eC-CCCHHHHHHHHHhcCCCeEEE--eCCCcc
Confidence 556666788887763 256777777765 33 222221 11 123444555555554344333 333322
Q ss_pred HH-HHHHHHcCCCEEEEccccccCcchh
Q 020636 293 TD-VFKALALGASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 293 ~d-i~kal~lGAd~V~iG~~~~~~~~~~ 319 (323)
++ +..++.+||++++-|..-+....+.
T Consensus 187 d~~~~~~l~~Ga~G~is~~~n~~P~~~~ 214 (289)
T cd00951 187 EVFALAYLAMGVPTYSSAVFNFVPEIAL 214 (289)
T ss_pred hHhHHHHHHCCCCEEEechhhhhHHHHH
Confidence 33 5778899999998776554444443
No 397
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=94.64 E-value=1.5 Score=41.00 Aligned_cols=151 Identities=17% Similarity=0.118 Sum_probs=80.3
Q ss_pred CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHH
Q 020636 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (323)
Q Consensus 123 ~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (323)
-|..+-.-...++..+.+.+++.+++|+.++.|. |... .+| .++ +. + .+.. .
T Consensus 79 ~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iE-Dq~~-pk~-----cg~-~~-------------~-----~~~~--~ 130 (285)
T TIGR02320 79 KPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIE-DKLG-LKK-----NSL-FG-------------N-----DVAQ--P 130 (285)
T ss_pred CCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEe-ccCC-Ccc-----ccc-cC-------------C-----CCcc--c
Confidence 3555554334677888888999999999888763 3211 110 000 00 0 0000 0
Q ss_pred HHhhccCCccCHHHHHHHHHh-c--CCCEEEe----c-cCCHHH----HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHH
Q 020636 203 YVAGQIDRSLSWKDVKWLQTI-T--KLPILVK----G-VLTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMAL 270 (323)
Q Consensus 203 ~~~~~~~~~~~~~~i~~i~~~-~--~~pv~vK----~-i~~~e~----a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l 270 (323)
. .+.+...+.|+..++. . +++|+.. . ....++ ++...++|||.|.+.. + ..+.+.+
T Consensus 131 l----~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~--~------~~~~~ei 198 (285)
T TIGR02320 131 Q----ASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIHS--R------KKDPDEI 198 (285)
T ss_pred c----cCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEecC--C------CCCHHHH
Confidence 0 0111112345555443 2 3555555 1 123334 6788899999998841 1 2345666
Q ss_pred HHHHHHhcC---CCeEEEecCCCCHHHHHHHHHcCCCEEEEccccc
Q 020636 271 EEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFVSIMPC 313 (323)
Q Consensus 271 ~~i~~~~~~---~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~ 313 (323)
.++.+.++. ++|+++..+-.-...+.+.-++|.+.|..|..++
T Consensus 199 ~~~~~~~~~~~p~~pl~~~~~~~~~~~~~eL~~lG~~~v~~~~~~~ 244 (285)
T TIGR02320 199 LEFARRFRNHYPRTPLVIVPTSYYTTPTDEFRDAGISVVIYANHLL 244 (285)
T ss_pred HHHHHHhhhhCCCCCEEEecCCCCCCCHHHHHHcCCCEEEEhHHHH
Confidence 666666543 4688765431111134555678999999986543
No 398
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=94.53 E-value=1.6 Score=40.53 Aligned_cols=83 Identities=28% Similarity=0.354 Sum_probs=50.2
Q ss_pred cCCCEEEec--cCCHHH----HHHHHHcCCCEEEEcCCCCCCCCCC--cchHHHHHHHHHHhcCCCeEEEe---------
Q 020636 224 TKLPILVKG--VLTAED----ARIAVQAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVFLD--------- 286 (323)
Q Consensus 224 ~~~pv~vK~--i~~~e~----a~~~~~~Gad~i~vs~~gg~~~~~~--~~~~~~l~~i~~~~~~~~pvia~--------- 286 (323)
++.||.+|- ..++++ ++.+...|-+-|++.-+|-+ .... ..++..++.+++ . ..|||+|
T Consensus 129 tgkpV~lKkGq~~t~~e~~~aaeki~~~GN~~viLcERG~t-Fgy~~lv~D~r~ip~mk~-~--~lPVI~DpSHsvQ~pg 204 (290)
T PLN03033 129 TGKIINIKKGQFCAPSVMRNSAEKVRLAGNPNVMVCERGTM-FGYNDLIVDPRNLEWMRE-A--NCPVVADITHSLQQPA 204 (290)
T ss_pred cCCeEEeCCCCCCCHHHHHHHHHHHHHcCCCcEEEEeCCCC-cCCCCcccchhhhHHHHh-c--CCCEEEeCCccccCCC
Confidence 355666662 245555 56667788888888776642 2111 234556666654 3 6899985
Q ss_pred -----------cCCCCHH--HHHHHHHcCCCEEEEcc
Q 020636 287 -----------GGVRRGT--DVFKALALGASGIFVSI 310 (323)
Q Consensus 287 -----------GGI~~~~--di~kal~lGAd~V~iG~ 310 (323)
||-|.-- =...|+++|||++++=.
T Consensus 205 ~~~~~~~g~~s~G~Re~V~~larAAvA~GaDGlfiEv 241 (290)
T PLN03033 205 GKKLDGGGVASGGLRELIPCIARTAVAVGVDGIFMEV 241 (290)
T ss_pred cccccccCCCCCCCHHHHHHHHHHHHHhCCCEEEEEe
Confidence 3333322 23467789999999965
No 399
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=94.52 E-value=0.31 Score=45.24 Aligned_cols=81 Identities=22% Similarity=0.350 Sum_probs=53.3
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~~ 313 (323)
++.+.+.|+++|.+.++.|....-... -.+++..+++.+.+++||++-=|-.+..+.++ |-.+|||+|++..+..
T Consensus 27 i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~~ 106 (284)
T cd00950 27 IEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPYY 106 (284)
T ss_pred HHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEccccc
Confidence 456778999999998766643221111 22455556666666899987555556666654 3448999999998877
Q ss_pred cCcchh
Q 020636 314 QCPLTE 319 (323)
Q Consensus 314 ~~~~~~ 319 (323)
..+..+
T Consensus 107 ~~~~~~ 112 (284)
T cd00950 107 NKPSQE 112 (284)
T ss_pred CCCCHH
Confidence 655433
No 400
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=94.43 E-value=0.44 Score=44.55 Aligned_cols=83 Identities=20% Similarity=0.302 Sum_probs=60.3
Q ss_pred CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCC----CCCCCcchH----HHHHHHHHHhcCCCeEEEec--CCCCHHH
Q 020636 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATI----MALEEVVKATQGRIPVFLDG--GVRRGTD 294 (323)
Q Consensus 225 ~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~----~~~~~~~~~----~~l~~i~~~~~~~~pvia~G--GI~~~~d 294 (323)
+.|+++-++.+.-.|+.+.++|++++.+|+++-. ..|.+.-++ +.+.+|.+.+ ++||++|. |..++..
T Consensus 12 ~~~l~~p~~~Da~SAri~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~--~iPviaD~d~GyG~~~~ 89 (285)
T TIGR02317 12 EDILQIPGAINAMAALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVT--DLPLLVDADTGFGEAFN 89 (285)
T ss_pred CCcEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCHHH
Confidence 4588888999999999999999999999876421 134333232 3445555555 79999975 8888888
Q ss_pred H----HHHHHcCCCEEEEc
Q 020636 295 V----FKALALGASGIFVS 309 (323)
Q Consensus 295 i----~kal~lGAd~V~iG 309 (323)
+ .+...+||.++.|-
T Consensus 90 v~~tv~~~~~aG~agi~IE 108 (285)
T TIGR02317 90 VARTVREMEDAGAAAVHIE 108 (285)
T ss_pred HHHHHHHHHHcCCeEEEEe
Confidence 5 34456899999983
No 401
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=94.43 E-value=0.1 Score=46.75 Aligned_cols=86 Identities=17% Similarity=0.030 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccc
Q 020636 234 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPC 313 (323)
Q Consensus 234 ~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~ 313 (323)
.+.++++...+.|.+-+++.-.--.+.++..-+...+..+++..+.+..+.++|||+-... .+....|||.+.+||++.
T Consensus 117 ~~~~~l~~~~~~~~~~~vl~~a~~~~~~G~v~s~~~~~~ir~~~~~~~~i~V~gGI~~~~~-~~~~~~~ad~~VvGr~I~ 195 (216)
T PRK13306 117 WTWEQAQQWRDAGISQVIYHRSRDAQLAGVAWGEKDLNKVKKLSDMGFKVSVTGGLVVEDL-KLFKGIPVKTFIAGRAIR 195 (216)
T ss_pred CCHHHHHHHHcCChhhhhhhhhhhhhhcCCCCCHHHHHHHHHHhcCCCeEEEcCCCCHhhH-HHHhcCCCCEEEECCccc
Confidence 4566666666666655544221111234433344445555554433456999999994322 123445999999999998
Q ss_pred cCcchhh
Q 020636 314 QCPLTEK 320 (323)
Q Consensus 314 ~~~~~~~ 320 (323)
+.++..+
T Consensus 196 ~a~dp~~ 202 (216)
T PRK13306 196 GAADPAA 202 (216)
T ss_pred CCCCHHH
Confidence 8776543
No 402
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=94.40 E-value=0.5 Score=42.80 Aligned_cols=40 Identities=28% Similarity=0.278 Sum_probs=33.0
Q ss_pred cCHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 212 LSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
.+|+.|++++ .++||+.- ++.+.++++.+++.|||+|.+.
T Consensus 180 ad~~~I~~i~--~~ipVIgnGgI~s~eda~~~l~~GaD~VmiG 220 (233)
T cd02911 180 ADLKKIRDIS--TELFIIGNNSVTTIESAKEMFSYGADMVSVA 220 (233)
T ss_pred CcHHHHHHhc--CCCEEEEECCcCCHHHHHHHHHcCCCEEEEc
Confidence 4577788876 57887764 6799999999999999999884
No 403
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=94.34 E-value=1 Score=42.51 Aligned_cols=42 Identities=14% Similarity=0.268 Sum_probs=36.5
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcC
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSN 254 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~ 254 (323)
+|+.++++++.+++||+.- |+.+.+++..++..|||+|.+..
T Consensus 149 ~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~~GA~gV~iGt 191 (307)
T TIGR03151 149 TMALVPQVVDAVSIPVIAAGGIADGRGMAAAFALGAEAVQMGT 191 (307)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCCEeecch
Confidence 5788889999889999888 57899999999999999998843
No 404
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=94.30 E-value=0.98 Score=43.28 Aligned_cols=171 Identities=19% Similarity=0.252 Sum_probs=102.3
Q ss_pred hhhhhhhcCCccchHHHHHhHHhhcccccccccccCCCCCccceeecCcccccceEECcccccccCC--cHHHHHHHHHH
Q 020636 20 KMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAH--PEGEYATARAA 97 (323)
Q Consensus 20 ~~~~~y~~~g~~~e~t~~~N~~~~~~i~l~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~--~~~e~~~a~aa 97 (323)
......+.++......++++.+.+....-.|.......... .|++...+.+ ..-+..+--.+
T Consensus 37 aGglG~ia~~~~~~e~l~~~i~~~~~~~~~p~~~~~f~~~~----------------~~v~~~~l~~~~~~~~~~~~~ii 100 (336)
T COG2070 37 AGGLGIIASGGLPAEQLRAEIRKIRALTDKPFVANNFGSAP----------------APVNVNILVARRNAAEAGVDAII 100 (336)
T ss_pred cCCccccccccCCHHHHHHHHHHHHHhcCCcchhccccccc----------------ccchhheecccccchHHhhhhHH
Confidence 44556777777777788888888887777775422111111 2333222222 22344555566
Q ss_pred HHcCCceeecCCCCCCHHHHHhcCC-CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCC
Q 020636 98 SAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP 176 (323)
Q Consensus 98 ~~~G~~~~vs~~s~~~~eei~~~~~-~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~ 176 (323)
..+|++.+..++...+-+.+..... +...+.... . .+..+++++.|+++++.. ..-..|
T Consensus 101 ~~~~vpvv~~~~g~~~~~~i~~~~~~g~~v~~~v~--~----~~~A~~~~~~G~d~vI~~-g~eAGG------------- 160 (336)
T COG2070 101 EGAGVPVVSTSFGAPPAEFVARLKAAGIKVIHSVI--T----VREALKAERAGADAVIAQ-GAEAGG------------- 160 (336)
T ss_pred hcCCCCEEeccCCCCcHHHHHHHHHcCCeEEEEeC--C----HHHHHHHHhCCCCEEEec-CCcCCC-------------
Confidence 6679999999886434444433221 223333222 2 245678889999988742 111111
Q ss_pred CccccccccccccCCCccccchhhHHHHhhccCCcc-CHHHHHHHHHhcC-CCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 177 PFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SWKDVKWLQTITK-LPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~~~-~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
|... .++.. +...+.++++.++ +||+.. |+.+.+++..++..|||+|.+.
T Consensus 161 --------------------------H~g~-~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAlalGA~gVq~G 213 (336)
T COG2070 161 --------------------------HRGG-VDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAALALGADGVQMG 213 (336)
T ss_pred --------------------------cCCC-CCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHHHhccHHHHhh
Confidence 0000 01223 3456889999998 899888 5789999999999999999873
No 405
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=94.29 E-value=2.1 Score=41.15 Aligned_cols=78 Identities=14% Similarity=0.210 Sum_probs=57.4
Q ss_pred CCHHHHHHHH-HcCCCEEEEcC---CCCCCCCCCc----chHHHHHHHHHHhcCCCeEEEecCCCC--------------
Q 020636 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVRR-------------- 291 (323)
Q Consensus 234 ~~~e~a~~~~-~~Gad~i~vs~---~gg~~~~~~~----~~~~~l~~i~~~~~~~~pvia~GGI~~-------------- 291 (323)
.++++|+... +.|+|.+-++. ||-......| -.++.|.+|.+.++ ++|+..=||=..
T Consensus 173 T~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~-~vPLVLHGgSG~~~~~~~~~~~~g~~ 251 (347)
T PRK09196 173 TDPEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLP-NTHLVMHGSSSVPQELLDIINEYGGD 251 (347)
T ss_pred CCHHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCC-CCCEEEeCCCCCCHHHHHHHHHhcCC
Confidence 5688888776 58999998864 5533211112 36789999998873 599998886544
Q ss_pred --------HHHHHHHHHcCCCEEEEcccc
Q 020636 292 --------GTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 292 --------~~di~kal~lGAd~V~iG~~~ 312 (323)
-+++.|++.+|..-|=++|-+
T Consensus 252 ~~~~~G~~~e~i~~ai~~GI~KINi~Tdl 280 (347)
T PRK09196 252 MPETYGVPVEEIQEGIKHGVRKVNIDTDL 280 (347)
T ss_pred ccccCCCCHHHHHHHHHCCCceEEeChHH
Confidence 467899999999999998865
No 406
>PLN02411 12-oxophytodienoate reductase
Probab=94.28 E-value=1.3 Score=43.29 Aligned_cols=226 Identities=17% Similarity=0.127 Sum_probs=106.4
Q ss_pred cceeecCcccccceEECccccccc--CCc-HHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEEeeecCChHH
Q 020636 61 MNTTVLGFKISMPIMIAPTAMQKM--AHP-EGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNV 137 (323)
Q Consensus 61 ~~t~i~g~~~~~Pi~iaPm~~~~l--~~~-~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QLy~~~d~~~ 137 (323)
...+|.+.++++-|++|||+...- ..| +-.+..-+.-++-| ++++++....+.+ ....+ ....+|-....+-
T Consensus 14 ~P~~ig~~~lkNRiv~aPm~~~~~~dG~~t~~~~~yy~~rA~gG-GLIIte~~~V~~~--g~~~~--~~~gi~~d~~i~~ 88 (391)
T PLN02411 14 SPYKMGRFDLSHRVVLAPMTRCRALNGIPNAALAEYYAQRSTPG-GFLISEGTLISPT--APGFP--HVPGIYSDEQVEA 88 (391)
T ss_pred CCeeECCEEEcccCEECCcCcCcCCCCCCCHHHHHHHHHHHcCC-CEEEeCceEECcc--cCcCC--CCCccCCHHHHHH
Confidence 346888999999999999964321 111 12234444444445 7777664332211 01111 1122332222355
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCC-ccccchhhHHHHhhccCCccCHHH
Q 020636 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEANDSGLAAYVAGQIDRSLSWKD 216 (323)
Q Consensus 138 ~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 216 (323)
.+++++.+.+.|++.+ +.+- +.|+...-.......++ +.... .+.... ......+. ......-..++.++
T Consensus 89 ~~~l~~avH~~G~~i~-~QL~--H~Gr~~~~~~~~~~~~~-~~~s~---~~~~~~~~~~~~~~~--~~~~~~pr~mt~~e 159 (391)
T PLN02411 89 WKKVVDAVHAKGSIIF-CQLW--HVGRASHQVYQPGGAAP-ISSTN---KPISERWRILMPDGS--YGKYPKPRALETSE 159 (391)
T ss_pred HHHHHHHHHhcCCEEE-Eecc--CCCCCCccccccCCCCc-cCCcc---ccccCCcccccCCcc--ccCCCCCccCCHHH
Confidence 5777788888898753 3432 22332110000000000 00000 000000 00000000 00000113467788
Q ss_pred HHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCC---CC---------C--CC------cchHHHHHHHHHH
Q 020636 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR---QL---------D--YV------PATIMALEEVVKA 276 (323)
Q Consensus 217 i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~---~~---------~--~~------~~~~~~l~~i~~~ 276 (323)
|+++.+.+ .+-|++|.++|+|+|.+++..|. |. | |+ .-.++.+..|+++
T Consensus 160 I~~ii~~f-----------~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~ 228 (391)
T PLN02411 160 IPEVVEHY-----------RQAALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSA 228 (391)
T ss_pred HHHHHHHH-----------HHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHH
Confidence 88887764 36689999999999999643221 10 1 21 1134677777777
Q ss_pred hcCC-CeEEEec-----------CCCCHHHHHHHHHc-------CCCEEEEccc
Q 020636 277 TQGR-IPVFLDG-----------GVRRGTDVFKALAL-------GASGIFVSIM 311 (323)
Q Consensus 277 ~~~~-~pvia~G-----------GI~~~~di~kal~l-------GAd~V~iG~~ 311 (323)
++.+ +-|=.++ ++..+..+.+.|+. |.|.+-+...
T Consensus 229 vg~d~vgvRiS~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g 282 (391)
T PLN02411 229 IGADRVGVRVSPAIDHLDATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQP 282 (391)
T ss_pred cCCCeEEEEEcccccccCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCC
Confidence 7533 2221221 12334556666652 5888877653
No 407
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=94.27 E-value=3.2 Score=38.78 Aligned_cols=76 Identities=21% Similarity=0.296 Sum_probs=56.7
Q ss_pred CCHHHHHHHH-HcCCCEEEEcC---CCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH-HHHHHHHHcCCCEEEE
Q 020636 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFV 308 (323)
Q Consensus 234 ~~~e~a~~~~-~~Gad~i~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~-~di~kal~lGAd~V~i 308 (323)
.++++|+... +.|+|.+-++- ||.... ...-.++.|.+|.+.+ ++|+..=||=..+ +++.|++.+|..-|=+
T Consensus 155 T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y~~-~p~Ld~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi 231 (284)
T PRK12857 155 TDPEEARRFVEETGVDALAIAIGTAHGPYKG-EPKLDFDRLAKIKELV--NIPIVLHGSSGVPDEAIRKAISLGVRKVNI 231 (284)
T ss_pred CCHHHHHHHHHHHCCCEEeeccCccccccCC-CCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEe
Confidence 4688888776 68999999864 453321 1123678999999988 7999998866555 4566788999999999
Q ss_pred cccc
Q 020636 309 SIMP 312 (323)
Q Consensus 309 G~~~ 312 (323)
+|-+
T Consensus 232 ~T~~ 235 (284)
T PRK12857 232 DTNI 235 (284)
T ss_pred CcHH
Confidence 9865
No 408
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=94.27 E-value=1.8 Score=41.50 Aligned_cols=78 Identities=17% Similarity=0.253 Sum_probs=58.4
Q ss_pred CCHHHHHHHH-HcCCCEEEEcC---CCCCCCCCCc----chHHHHHHHHHHhcCCCeEEEecCCCCH-------------
Q 020636 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVRRG------------- 292 (323)
Q Consensus 234 ~~~e~a~~~~-~~Gad~i~vs~---~gg~~~~~~~----~~~~~l~~i~~~~~~~~pvia~GGI~~~------------- 292 (323)
.++++|+... +.|+|.+-++. ||-......| -.++.|.+|.+.++ ++|+..=||=..+
T Consensus 171 T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~-~vPLVLHGgSG~p~~~~~~~~~~~~~ 249 (347)
T TIGR01521 171 TDPEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLP-DTHLVMHGSSSVPQEWLDIINEYGGE 249 (347)
T ss_pred CCHHHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCC-CCCEEEeCCCCCchHhhHHHHhhccc
Confidence 5788888776 58999999864 5533211012 45788999988873 5999998876655
Q ss_pred ---------HHHHHHHHcCCCEEEEcccc
Q 020636 293 ---------TDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 293 ---------~di~kal~lGAd~V~iG~~~ 312 (323)
+++.+++.+|..-|=|+|-+
T Consensus 250 ~~~~~g~p~e~i~~ai~~GI~KVNi~Tdl 278 (347)
T TIGR01521 250 IKETYGVPVEEIVEGIKYGVRKVNIDTDL 278 (347)
T ss_pred ccccCCCCHHHHHHHHHCCCeeEEeChHH
Confidence 88999999999999999865
No 409
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=94.23 E-value=0.14 Score=46.25 Aligned_cols=68 Identities=24% Similarity=0.256 Sum_probs=47.9
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH-----------HHHHHHHcCCCE
Q 020636 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT-----------DVFKALALGASG 305 (323)
Q Consensus 237 e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~-----------di~kal~lGAd~ 305 (323)
+-++.+.+.|+|+++++.. .+..+++..+ .-.+++.+||+ +. ....++..|||.
T Consensus 139 ~~a~~a~~~g~dgvv~~~~-------------~~~~ir~~~~-~~~~~v~pGI~-~~g~~~~dq~~~~~~~~ai~~Gad~ 203 (230)
T PRK00230 139 RLAKLAQEAGLDGVVCSAQ-------------EAAAIREATG-PDFLLVTPGIR-PAGSDAGDQKRVMTPAQAIAAGSDY 203 (230)
T ss_pred HHHHHHHHcCCeEEEeChH-------------HHHHHHhhcC-CceEEEcCCcC-CCCCCcchHHHHhCHHHHHHcCCCE
Confidence 3466778899999987531 1344555443 34457779997 33 477788999999
Q ss_pred EEEccccccCcchh
Q 020636 306 IFVSIMPCQCPLTE 319 (323)
Q Consensus 306 V~iG~~~~~~~~~~ 319 (323)
+.+||+....++-.
T Consensus 204 iVvGR~I~~a~dP~ 217 (230)
T PRK00230 204 IVVGRPITQAADPA 217 (230)
T ss_pred EEECCcccCCCCHH
Confidence 99999998877643
No 410
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=94.18 E-value=0.14 Score=46.07 Aligned_cols=43 Identities=28% Similarity=0.362 Sum_probs=38.6
Q ss_pred cCHHHHHHHHHhc-CCCEEEe-ccCCHHHHHHHHHcCCCEEEEcC
Q 020636 212 LSWKDVKWLQTIT-KLPILVK-GVLTAEDARIAVQAGAAGIIVSN 254 (323)
Q Consensus 212 ~~~~~i~~i~~~~-~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~ 254 (323)
...+.++.+++.+ +.|+++. |+.+.|+++.+.++|||+|++.+
T Consensus 165 v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs 209 (223)
T TIGR01768 165 VPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGN 209 (223)
T ss_pred cCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECc
Confidence 4588899999998 8999888 57999999999999999999965
No 411
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=94.15 E-value=1.6 Score=40.07 Aligned_cols=39 Identities=28% Similarity=0.324 Sum_probs=31.3
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEec
Q 020636 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287 (323)
Q Consensus 237 e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~G 287 (323)
++++.+.++|||.|.+-. +++ +..+++.+.+ ++|+|.-|
T Consensus 162 ~ra~a~~~AGA~~i~lE~---------v~~-~~~~~i~~~v--~iP~igiG 200 (254)
T cd06557 162 EDALALEEAGAFALVLEC---------VPA-ELAKEITEAL--SIPTIGIG 200 (254)
T ss_pred HHHHHHHHCCCCEEEEcC---------CCH-HHHHHHHHhC--CCCEEEec
Confidence 668889999999998843 333 6888888888 79999765
No 412
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=94.04 E-value=1.2 Score=41.73 Aligned_cols=169 Identities=19% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCceeecCCCC-----------CCHHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCC
Q 020636 91 YATARAASAAGTIMTLSSWST-----------SSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT 159 (323)
Q Consensus 91 ~~~a~aa~~~G~~~~vs~~s~-----------~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~ 159 (323)
.++.++|++.+.|.++....+ ..+..+++...-|.+++| |.....+.++++-+.||..+++.
T Consensus 31 ~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~vPValHL----DH~~~~e~i~~ai~~GftSVM~D--- 103 (287)
T PF01116_consen 31 RAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEEASVPVALHL----DHGKDFEDIKRAIDAGFTSVMID--- 103 (287)
T ss_dssp HHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHHSTSEEEEEE----EEE-SHHHHHHHHHHTSSEEEEE---
T ss_pred HHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHHcCCCEEeec----ccCCCHHHHHHHHHhCccccccc---
Q ss_pred CCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhc---CCCEEEecc---
Q 020636 160 PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT---KLPILVKGV--- 233 (323)
Q Consensus 160 p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~---~~pv~vK~i--- 233 (323)
.+..+-+.+++..+++.+.. ++.|=.=.-
T Consensus 104 ---------------------------------------------gS~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~ 138 (287)
T PF01116_consen 104 ---------------------------------------------GSALPFEENIAITREVVEYAHAYGVSVEAELGHIG 138 (287)
T ss_dssp ----------------------------------------------TTS-HHHHHHHHHHHHHHHHHTT-EEEEEESBSS
T ss_pred ---------------------------------------------CCcCCHHHHHHHHHHHHHhhhhhCCEEEEEeeeee
Q ss_pred ----------------CCHHHHHHHH-HcCCCEEEEcCCCCCCCCCC--cch--HHHHHHHHHHhcCCCeEEEecCCCCH
Q 020636 234 ----------------LTAEDARIAV-QAGAAGIIVSNHGARQLDYV--PAT--IMALEEVVKATQGRIPVFLDGGVRRG 292 (323)
Q Consensus 234 ----------------~~~e~a~~~~-~~Gad~i~vs~~gg~~~~~~--~~~--~~~l~~i~~~~~~~~pvia~GGI~~~ 292 (323)
.++++|+... +.|+|.+-++-..-+..... .|. ++.|.+|.+.++ ++|+..=||=..+
T Consensus 139 g~ed~~~~~~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~-~iPLVlHGgSG~~ 217 (287)
T PF01116_consen 139 GKEDGIESEEETESLYTDPEEAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVP-DIPLVLHGGSGLP 217 (287)
T ss_dssp SSCTTCSSSTT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHH-TSEEEESSCTTS-
T ss_pred ccCCCccccccccccccCHHHHHHHHHHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhcC-CCCEEEECCCCCC
Q ss_pred H-HHHHHHHcCCCEEEEcccc
Q 020636 293 T-DVFKALALGASGIFVSIMP 312 (323)
Q Consensus 293 ~-di~kal~lGAd~V~iG~~~ 312 (323)
. ++.+++.+|..-|=++|-+
T Consensus 218 ~e~~~~ai~~Gi~KiNi~T~~ 238 (287)
T PF01116_consen 218 DEQIRKAIKNGISKINIGTEL 238 (287)
T ss_dssp HHHHHHHHHTTEEEEEESHHH
T ss_pred HHHHHHHHHcCceEEEEehHH
No 413
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=94.02 E-value=0.48 Score=44.19 Aligned_cols=82 Identities=22% Similarity=0.324 Sum_probs=53.1
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~~ 313 (323)
++.+.+.|+++|.+.++.|....-... -.+++..+.+.+++++||++.=|-.+-.|.++ +-.+|||+|++-.+..
T Consensus 28 i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~ 107 (292)
T PRK03170 28 VDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYY 107 (292)
T ss_pred HHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 456778999999997766643221221 23455566666777899987545445555554 3347999999998877
Q ss_pred cCcchhh
Q 020636 314 QCPLTEK 320 (323)
Q Consensus 314 ~~~~~~~ 320 (323)
..+..+.
T Consensus 108 ~~~~~~~ 114 (292)
T PRK03170 108 NKPTQEG 114 (292)
T ss_pred CCCCHHH
Confidence 6654443
No 414
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=94.01 E-value=0.25 Score=46.32 Aligned_cols=83 Identities=20% Similarity=0.308 Sum_probs=59.9
Q ss_pred CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCC-----CCCCCcchH----HHHHHHHHHhcCCCeEEEec--CCCCHH
Q 020636 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR-----QLDYVPATI----MALEEVVKATQGRIPVFLDG--GVRRGT 293 (323)
Q Consensus 225 ~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~-----~~~~~~~~~----~~l~~i~~~~~~~~pvia~G--GI~~~~ 293 (323)
+.|+++-++.+.-.|+.+.++|++++.+|+++.. ..|.+.-++ +.+.+|...+ ++||++|. |..+..
T Consensus 15 ~~~l~~p~v~Da~SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~--~lPv~aD~dtGyG~~~ 92 (294)
T TIGR02319 15 PEILVVPSAYDALSAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAV--DVPVIMDADAGYGNAM 92 (294)
T ss_pred CCcEEeecCcCHHHHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCcH
Confidence 4588888999999999999999999998765421 235443333 3444555555 79999976 777777
Q ss_pred HH----HHHHHcCCCEEEEc
Q 020636 294 DV----FKALALGASGIFVS 309 (323)
Q Consensus 294 di----~kal~lGAd~V~iG 309 (323)
++ .++..+||.++.|-
T Consensus 93 ~v~r~V~~~~~aGaagi~IE 112 (294)
T TIGR02319 93 SVWRATREFERVGIVGYHLE 112 (294)
T ss_pred HHHHHHHHHHHcCCeEEEEE
Confidence 75 45556899999983
No 415
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=94.00 E-value=0.98 Score=39.40 Aligned_cols=87 Identities=25% Similarity=0.211 Sum_probs=59.7
Q ss_pred HHHHHHHHHhc-CCCEEEec-cCCH--HHHHHHHHcCCCEEEEcCCCCCCCCCCcchH-HHHHHHHHHhcCCCeEEEe-c
Q 020636 214 WKDVKWLQTIT-KLPILVKG-VLTA--EDARIAVQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKATQGRIPVFLD-G 287 (323)
Q Consensus 214 ~~~i~~i~~~~-~~pv~vK~-i~~~--e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~-~~l~~i~~~~~~~~pvia~-G 287 (323)
.+.++++++.. +.|+++-. +.+. ..++.+.++|+|.|.+..... +... +.+..+++ . .++++++ =
T Consensus 41 ~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~------~~~~~~~i~~~~~-~--g~~~~v~~~ 111 (202)
T cd04726 41 MEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAP------LSTIKKAVKAAKK-Y--GKEVQVDLI 111 (202)
T ss_pred HHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCC------HHHHHHHHHHHHH-c--CCeEEEEEe
Confidence 56788888874 67877642 2232 357889999999999853211 1112 23333332 2 5777775 7
Q ss_pred CCCCHHHHHHHHHcCCCEEEEc
Q 020636 288 GVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 288 GI~~~~di~kal~lGAd~V~iG 309 (323)
+..|+.++.+++..|+|.|.++
T Consensus 112 ~~~t~~e~~~~~~~~~d~v~~~ 133 (202)
T cd04726 112 GVEDPEKRAKLLKLGVDIVILH 133 (202)
T ss_pred CCCCHHHHHHHHHCCCCEEEEc
Confidence 8999999999888999999985
No 416
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=93.98 E-value=0.6 Score=43.85 Aligned_cols=87 Identities=22% Similarity=0.181 Sum_probs=59.1
Q ss_pred HHHHHhcCCCEEEeccC--CHH----HHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 020636 218 KWLQTITKLPILVKGVL--TAE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (323)
Q Consensus 218 ~~i~~~~~~pv~vK~i~--~~e----~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~ 291 (323)
+.+++..+.|+.+-... +++ .++.+.+.|+|+|.+.-... + .+....++.+.++++.+ ++||++- ++.+
T Consensus 108 ~~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p-~-~~~~~~~~~i~~l~~~~--~~pvivK-~v~s 182 (299)
T cd02809 108 EEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTP-V-LGRRLTWDDLAWLRSQW--KGPLILK-GILT 182 (299)
T ss_pred HHHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCC-C-CCCCCCHHHHHHHHHhc--CCCEEEe-ecCC
Confidence 34444444677666432 333 35666789999998843111 0 01113467888888877 6899885 5899
Q ss_pred HHHHHHHHHcCCCEEEEc
Q 020636 292 GTDVFKALALGASGIFVS 309 (323)
Q Consensus 292 ~~di~kal~lGAd~V~iG 309 (323)
.+++.++..+|||+|.+.
T Consensus 183 ~~~a~~a~~~G~d~I~v~ 200 (299)
T cd02809 183 PEDALRAVDAGADGIVVS 200 (299)
T ss_pred HHHHHHHHHCCCCEEEEc
Confidence 999999999999999884
No 417
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=93.95 E-value=0.52 Score=44.22 Aligned_cols=110 Identities=21% Similarity=0.174 Sum_probs=63.0
Q ss_pred CCceeEEeeecCChHHHHHHHHHHHHc--CCcEEEEecCCCCCCchHHHH-hhccCCCCccccccccccccCCCccccch
Q 020636 122 PGIRFFQLYVYKDRNVVAQLVRRAERA--GFKAIALTVDTPRLGRREADI-KNRFTLPPFLTLKNFQGLDLGKMDEANDS 198 (323)
Q Consensus 122 ~~~~~~QLy~~~d~~~~~~~~~~a~~~--G~~al~itvd~p~~g~r~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (323)
..|.++.|-+..|.+.+.++++.+++. |+++++++ ++-..+.. -|. +.. | .+.. ....+.+ .+.
T Consensus 157 ~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~-Nt~~~~~~-id~~~~~---~---~~~~--~~~~gG~---SG~ 223 (294)
T cd04741 157 SIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITAT-NTLGNGLV-LDPERET---V---VLKP--KTGFGGL---AGA 223 (294)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEE-ccCCcccc-ccCCCCC---c---ccCC--CCCCCCc---Cch
Confidence 467899997766776777888888888 88888753 22110000 000 000 0 0000 0000000 000
Q ss_pred hhHHHHhhccCCccCHHHHHHHHHhcC--CCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 199 GLAAYVAGQIDRSLSWKDVKWLQTITK--LPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~i~~i~~~~~--~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
.+ ....++.++.+++..+ +||+.- ||.+.+||.+.+.+|||+|.+.
T Consensus 224 ~i---------~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ 272 (294)
T cd04741 224 YL---------HPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVG 272 (294)
T ss_pred hh---------HHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEc
Confidence 00 1124566777888874 787554 6899999999999999999884
No 418
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=93.94 E-value=0.75 Score=43.93 Aligned_cols=43 Identities=26% Similarity=0.408 Sum_probs=35.8
Q ss_pred CccCHHHHHHHHHhc-CCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 210 RSLSWKDVKWLQTIT-KLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~-~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
+...|+.++.+++.+ ++||+.- ++.++++++.+++ |||+|.+.
T Consensus 189 ~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~-~aDgVmIG 233 (333)
T PRK11815 189 PPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ-HVDGVMIG 233 (333)
T ss_pred CCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-cCCEEEEc
Confidence 446799999999886 8998775 6799999999987 79999883
No 419
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=93.90 E-value=2.1 Score=38.47 Aligned_cols=43 Identities=14% Similarity=0.248 Sum_probs=36.6
Q ss_pred cCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcC
Q 020636 212 LSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN 254 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~ 254 (323)
...+.++|+++..++|++.=|..+.+++..+.++|+++|.+..
T Consensus 151 ~gl~~l~~~~~~~~iPvvAIGGI~~~n~~~~~~~GA~giAvis 193 (221)
T PRK06512 151 RNLSLAEWWAEMIEIPCIVQAGSDLASAVEVAETGAEFVALER 193 (221)
T ss_pred CChHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHhCCCEEEEhH
Confidence 3567788888888999887777799999999999999998853
No 420
>PLN02979 glycolate oxidase
Probab=93.89 E-value=0.49 Score=45.66 Aligned_cols=42 Identities=31% Similarity=0.478 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 266 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 266 ~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
+++.|..+++.. ++|||+ .||-+.+|+.+++.+|+|+|.++.
T Consensus 211 tW~dl~wlr~~~--~~Pviv-KgV~~~~dA~~a~~~Gvd~I~Vsn 252 (366)
T PLN02979 211 SWKDVQWLQTIT--KLPILV-KGVLTGEDARIAIQAGAAGIIVSN 252 (366)
T ss_pred CHHHHHHHHhcc--CCCEEe-ecCCCHHHHHHHHhcCCCEEEECC
Confidence 466777777766 799998 568899999999999999999953
No 421
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=93.87 E-value=0.39 Score=45.95 Aligned_cols=104 Identities=19% Similarity=0.243 Sum_probs=64.5
Q ss_pred CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHH
Q 020636 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (323)
Q Consensus 123 ~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (323)
.|.|+.|.+..+.+.+.++++.++++|+++++++ ++-. . + +. +. .+... ...+-+ .+..+
T Consensus 211 ~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~-NT~~-~-~--~~---~~-~~~~~------~~~GGl---SG~~i-- 270 (335)
T TIGR01036 211 VPVLVKIAPDLTESDLEDIADSLVELGIDGVIAT-NTTV-S-R--SL---VQ-GPKNS------DETGGL---SGKPL-- 270 (335)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEE-CCCC-c-c--cc---cc-Ccccc------CCCCcc---cCHHH--
Confidence 5789999776666678888999999999998864 3321 1 0 00 00 00000 000000 01111
Q ss_pred HHhhccCCccCHHHHHHHHHhc--CCCEE-EeccCCHHHHHHHHHcCCCEEEEc
Q 020636 203 YVAGQIDRSLSWKDVKWLQTIT--KLPIL-VKGVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 203 ~~~~~~~~~~~~~~i~~i~~~~--~~pv~-vK~i~~~e~a~~~~~~Gad~i~vs 253 (323)
.....+.++.+++.. ++||+ +.||.+.+||...+.+|||.|.+.
T Consensus 271 -------~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ 317 (335)
T TIGR01036 271 -------QDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIY 317 (335)
T ss_pred -------HHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhh
Confidence 112456677777766 47876 667999999999999999999763
No 422
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=93.87 E-value=3 Score=40.05 Aligned_cols=78 Identities=15% Similarity=0.247 Sum_probs=57.9
Q ss_pred CCHHHHHHHH-HcCCCEEEEcC---CCCCCCCCCc----chHHHHHHHHHHhcCCCeEEEecCCCCH-------------
Q 020636 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVRRG------------- 292 (323)
Q Consensus 234 ~~~e~a~~~~-~~Gad~i~vs~---~gg~~~~~~~----~~~~~l~~i~~~~~~~~pvia~GGI~~~------------- 292 (323)
.++++|+... +.|+|.+-++. ||-......| -.++.|.+|.+.++ ++|+..=||=..+
T Consensus 173 T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~-~vPLVLHGgSGvp~~~~~~~~~~g~~ 251 (347)
T PRK13399 173 TDPDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLP-NTHLVMHGSSSVPQELQEIINAYGGK 251 (347)
T ss_pred CCHHHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcC-CCCEEEeCCCCCCHHHHHHHHHhcCC
Confidence 5688888777 57999998864 5532211011 35788999998873 5999998876655
Q ss_pred ---------HHHHHHHHcCCCEEEEcccc
Q 020636 293 ---------TDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 293 ---------~di~kal~lGAd~V~iG~~~ 312 (323)
+++.||+.+|..-|=|+|-+
T Consensus 252 ~~~~~g~~~e~~~kai~~GI~KINi~Tdl 280 (347)
T PRK13399 252 MKETYGVPVEEIQRGIKHGVRKVNIDTDI 280 (347)
T ss_pred ccccCCCCHHHHHHHHHCCCeEEEeChHH
Confidence 78999999999999998755
No 423
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=93.84 E-value=0.51 Score=45.18 Aligned_cols=96 Identities=11% Similarity=0.087 Sum_probs=62.6
Q ss_pred HHHhcCCCceeEEeee------cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCcccccccccccc
Q 020636 116 EVASTGPGIRFFQLYV------YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDL 189 (323)
Q Consensus 116 ei~~~~~~~~~~QLy~------~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~ 189 (323)
+|++..+.+..+.+-. ..+.+...++++++++.|++.+.|+...... + ..
T Consensus 201 ~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~-------------~-~~---------- 256 (337)
T PRK13523 201 AVKEVWDGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVP-------------A-RI---------- 256 (337)
T ss_pred HHHHhcCCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC-------------C-CC----------
Confidence 3444434455555543 1256667788888889999888877543110 0 00
Q ss_pred CCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEec-cCCHHHHHHHHHcC-CCEEEE
Q 020636 190 GKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAG-AAGIIV 252 (323)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~G-ad~i~v 252 (323)
...+...|+..+.+++.+++||+.-| +.++++|+.+++.| +|.|.+
T Consensus 257 -----------------~~~~~~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~ 304 (337)
T PRK13523 257 -----------------DVYPGYQVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIFI 304 (337)
T ss_pred -----------------CCCccccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHHh
Confidence 00112356778889999999987664 57999999999887 998865
No 424
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=93.83 E-value=0.15 Score=45.70 Aligned_cols=42 Identities=29% Similarity=0.464 Sum_probs=37.4
Q ss_pred CHHHHHHHHHhc-CCCEEEe-ccCCHHHHHHHHHcCCCEEEEcC
Q 020636 213 SWKDVKWLQTIT-KLPILVK-GVLTAEDARIAVQAGAAGIIVSN 254 (323)
Q Consensus 213 ~~~~i~~i~~~~-~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~ 254 (323)
+.+.++.+++.+ +.|+++. |+.+.|+|+.+.++|||+|++.+
T Consensus 162 ~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs 205 (219)
T cd02812 162 PPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGN 205 (219)
T ss_pred CHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECc
Confidence 467899999988 8999998 57999999999999999999955
No 425
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=93.74 E-value=0.32 Score=44.37 Aligned_cols=83 Identities=16% Similarity=0.110 Sum_probs=56.8
Q ss_pred CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCC----CCCCcchHH----HHHHHHHHhcCCCeEEEecCCCCH---H
Q 020636 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ----LDYVPATIM----ALEEVVKATQGRIPVFLDGGVRRG---T 293 (323)
Q Consensus 225 ~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~----~~~~~~~~~----~l~~i~~~~~~~~pvia~GGI~~~---~ 293 (323)
+-|+++=++.+.-.|+.+.++|+|.|.++++++.. .|...-+++ .++.+.+.++ ..||++|.---++ +
T Consensus 11 ~~~i~~~~ayD~~sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~-~~pviaD~~~G~g~~~~ 89 (240)
T cd06556 11 KERFATLTAYDYSMAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAP-LALIVADLPFGAYGAPT 89 (240)
T ss_pred CCeEEEecCCCHHHHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCC-CCCEEEeCCCCCCcCHH
Confidence 46888888899999999999999999998764321 344333443 2333333331 4799998744433 5
Q ss_pred H----HHHHHHcCCCEEEE
Q 020636 294 D----VFKALALGASGIFV 308 (323)
Q Consensus 294 d----i~kal~lGAd~V~i 308 (323)
+ +.+.+.+||++|-|
T Consensus 90 ~~~~~~~~l~~aGa~gv~i 108 (240)
T cd06556 90 AAFELAKTFMRAGAAGVKI 108 (240)
T ss_pred HHHHHHHHHHHcCCcEEEE
Confidence 5 44566799999998
No 426
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=93.74 E-value=6.1 Score=37.13 Aligned_cols=190 Identities=19% Similarity=0.216 Sum_probs=113.6
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCceee--c---CCCCCCHHHHHh-------cCC--CceeEEeeecCChHH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~s~~~~eei~~-------~~~--~~~~~QLy~~~d~~~ 137 (323)
.|.++.|+.-.+-.+.++-..+.+-..+.|+-.++ + ++.+.|.||-.+ ... -+.+.+... .+-+.
T Consensus 9 i~a~vTPF~~dg~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~-~~t~e 87 (299)
T COG0329 9 IPALVTPFDEDGSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGS-NSTAE 87 (299)
T ss_pred eeccccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCC-CcHHH
Confidence 67888898754435555666778888888865443 2 234566666332 222 345666643 34566
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHH
Q 020636 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (323)
Q Consensus 138 ~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (323)
..++.+.+++.|++++.+. +|..-+ | +.+-..+..
T Consensus 88 ai~lak~a~~~Gad~il~v--~PyY~k-----------~--------------------------------~~~gl~~hf 122 (299)
T COG0329 88 AIELAKHAEKLGADGILVV--PPYYNK-----------P--------------------------------SQEGLYAHF 122 (299)
T ss_pred HHHHHHHHHhcCCCEEEEe--CCCCcC-----------C--------------------------------ChHHHHHHH
Confidence 6788899999999999864 233100 0 001123456
Q ss_pred HHHHHhcCCCEEEecc-------CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCC
Q 020636 218 KWLQTITKLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 218 ~~i~~~~~~pv~vK~i-------~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
+++.+.+++|+++=.+ .++|...++.+. -..+-+=.. ..+++.+.++....+.+--++.+|
T Consensus 123 ~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~~-~nivgiKd~--------~gd~~~~~~~~~~~~~~~f~v~~G--- 190 (299)
T COG0329 123 KAIAEAVDLPVILYNIPSRTGVDLSPETIARLAEH-PNIVGVKDS--------SGDLDRLEEIIAALGDRDFIVLSG--- 190 (299)
T ss_pred HHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhcC-CCEEEEEeC--------CcCHHHHHHHHHhcCccCeeEEeC---
Confidence 7777888999888754 578888888772 223323111 125666777666553211244445
Q ss_pred CHHHHHHHHHcCCCEEEEccccccCcchh
Q 020636 291 RGTDVFKALALGASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~iG~~~~~~~~~~ 319 (323)
.-+.++-++.+|++++.-+..=+....+.
T Consensus 191 ~d~~~~~~~~~G~~G~is~~~N~~p~~~~ 219 (299)
T COG0329 191 DDELALPALLLGADGVISVTANVAPELAV 219 (299)
T ss_pred chHHHHHHHhCCCCeEEecccccCHHHHH
Confidence 34556777889999999887655444443
No 427
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=93.71 E-value=5.6 Score=37.73 Aligned_cols=209 Identities=19% Similarity=0.165 Sum_probs=0.0
Q ss_pred ceeecCccccc---ceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCcee-----------E
Q 020636 62 NTTVLGFKISM---PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRF-----------F 127 (323)
Q Consensus 62 ~t~i~g~~~~~---Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~-----------~ 127 (323)
..+|.|+++.. |++||=+|..--+.-+--.++.++|+++|...+=- ++-.+.+.+......... +
T Consensus 1 ~~~Ig~r~i~~~~~~~iIAEig~NHnG~le~A~~lIdaAk~aGADavKf-Qt~~~~d~~t~~~~~~~~~i~~~~~~~sly 79 (347)
T COG2089 1 MIKIGNRTIGKDKKPFIIAEIGANHNGDLERAKELIDAAKEAGADAVKF-QTFYTPDIMTLESKNVPFKIKTLWDKVSLY 79 (347)
T ss_pred CeeeCceeecCCCCcEEEeeecccccCcHHHHHHHHHHHHHcCcceeee-ecccccccccccccCCccccccccccccHH
Q ss_pred Eeee--cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCC-ccccccccccccCCCccccchhhHHHH
Q 020636 128 QLYV--YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYV 204 (323)
Q Consensus 128 QLy~--~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (323)
|+|- .-+.++..++.+.+++.|.-.+. .....+..|+-+.+..|. |+-
T Consensus 80 el~e~~~~p~e~~~~Lke~a~~~Gi~~~S-----SPfd~~svd~l~~~~~~ayKIa------------------------ 130 (347)
T COG2089 80 ELYEEAETPLEWHAQLKEYARKRGIIFFS-----SPFDLTAVDLLESLNPPAYKIA------------------------ 130 (347)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCeEEEe-----cCCCHHHHHHHHhcCCCeEEec------------------------
Q ss_pred hhccCCccCHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHH----HcCCC-EEEEcCCCCCCCCCCcchHHHHHHHHHHhc
Q 020636 205 AGQIDRSLSWKDVKWLQTITKLPILVK-GVLTAEDARIAV----QAGAA-GIIVSNHGARQLDYVPATIMALEEVVKATQ 278 (323)
Q Consensus 205 ~~~~~~~~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~----~~Gad-~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~ 278 (323)
..+.++-.+-+.....+.|+++- |+.+.++.+.+. +.|.. .+.++......-......+..++.+.+..
T Consensus 131 ----S~E~~~~plik~iA~~~kPiIlSTGma~~~ei~~av~~~r~~g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F- 205 (347)
T COG2089 131 ----SGEINDLPLIKYIAKKGKPIILSTGMATIEEIEEAVAILRENGNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAF- 205 (347)
T ss_pred ----CccccChHHHHHHHhcCCCEEEEcccccHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCHHHhhHHHHHHHHHHh-
Q ss_pred CCCeEEEecCCCCHHHHHHHHHcCCCEE
Q 020636 279 GRIPVFLDGGVRRGTDVFKALALGASGI 306 (323)
Q Consensus 279 ~~~pvia~GGI~~~~di~kal~lGAd~V 306 (323)
.++|=.|.-=..-.-.+.|.++||..+
T Consensus 206 -n~~vGlSDHT~g~~a~l~AvALGA~vi 232 (347)
T COG2089 206 -NAIVGLSDHTLGILAPLAAVALGASVI 232 (347)
T ss_pred -CCccccccCccchhHHHHHHHhcccce
No 428
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=93.71 E-value=3.9 Score=37.53 Aligned_cols=92 Identities=12% Similarity=0.027 Sum_probs=60.2
Q ss_pred HHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcC-----CCCCCCC-C-----CcchHHHHHHHHHHh---cCCC
Q 020636 216 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN-----HGARQLD-Y-----VPATIMALEEVVKAT---QGRI 281 (323)
Q Consensus 216 ~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~-----~gg~~~~-~-----~~~~~~~l~~i~~~~---~~~~ 281 (323)
.++.+.+ -++++-+-.+.+.+.+..+.++|+++|...- ++..++. . +-+.+..+.++.+.. ..+.
T Consensus 131 A~~~L~~-~GI~vn~T~vfs~~Qa~~aa~Aga~~ispfvgRid~~~~~~~~~~~~d~~~~~gi~~~~~~~~~~~~~~~~t 209 (252)
T cd00439 131 AIKDLIA-AGISVNVTLIFSIAQYEAVADAGTSVASPFVSRIDTLMDKMLEQIGLDLRGKAGVAQVTLAYKLYKQKFKKQ 209 (252)
T ss_pred HHHHHHH-CCCceeeeeecCHHHHHHHHHcCCCEEEEeccHHHHHhhhhccccccccccCcHHHHHHHHHHHHHHhCCCC
Confidence 3444444 3788888899999999999999999887631 1211110 0 114455555555443 2256
Q ss_pred eEEEecCCCCHHHHHHHHHcCCCEEEEccc
Q 020636 282 PVFLDGGVRRGTDVFKALALGASGIFVSIM 311 (323)
Q Consensus 282 pvia~GGI~~~~di~kal~lGAd~V~iG~~ 311 (323)
.|++ ..+|+..++.+++ |+|.|-+.-.
T Consensus 210 kiL~-AS~r~~~~v~~l~--G~d~vT~~p~ 236 (252)
T cd00439 210 RVLW-ASFSDTLYVAPLI--GCDTVTTMPD 236 (252)
T ss_pred eEEE-EeeCCHHHHHHhh--CCCeeecCHH
Confidence 6655 4599999998766 9999987643
No 429
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=93.71 E-value=0.57 Score=42.73 Aligned_cols=97 Identities=23% Similarity=0.337 Sum_probs=55.1
Q ss_pred HHHHHHHHhcCCCEEEeccC---CH----HHHHHHHHcCCCEEEE--------cCCCC-CCCCCCcchHHHHHHHHHHhc
Q 020636 215 KDVKWLQTITKLPILVKGVL---TA----EDARIAVQAGAAGIIV--------SNHGA-RQLDYVPATIMALEEVVKATQ 278 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~vK~i~---~~----e~a~~~~~~Gad~i~v--------s~~gg-~~~~~~~~~~~~l~~i~~~~~ 278 (323)
+.++.|......|+++=+-. +. +.++++.++|+++|.+ .+|.+ ..+-......+.+..++++..
T Consensus 59 ~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~ 138 (243)
T cd00377 59 AAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARD 138 (243)
T ss_pred HHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHh
Confidence 34666667778898776322 33 3467888999999999 22221 111111112334555555554
Q ss_pred C--CCeEEEe--------cCCCCHHHHHH-HHHcCCCEEEEccc
Q 020636 279 G--RIPVFLD--------GGVRRGTDVFK-ALALGASGIFVSIM 311 (323)
Q Consensus 279 ~--~~pvia~--------GGI~~~~di~k-al~lGAd~V~iG~~ 311 (323)
+ +++|++= .|+...-.-.+ +.++|||+|++-.+
T Consensus 139 ~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~ 182 (243)
T cd00377 139 DLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGL 182 (243)
T ss_pred ccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 4 6888885 23333333333 33589999999643
No 430
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=93.65 E-value=1.9 Score=43.37 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHH-----------cCCCEEEEccccccCcc
Q 020636 267 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-----------LGASGIFVSIMPCQCPL 317 (323)
Q Consensus 267 ~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~-----------lGAd~V~iG~~~~~~~~ 317 (323)
+....+++.. +++-|++-|||.+++|...+|- +-.|++.+|++.+.+.+
T Consensus 202 L~tYs~lR~~--~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMatKE 261 (717)
T COG4981 202 LATYSELRSR--DNIVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMATKE 261 (717)
T ss_pred HHHHHHHhcC--CCEEEEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhHHhhhh
Confidence 3444455443 3799999999999999987662 34799999998887654
No 431
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=93.57 E-value=0.36 Score=44.50 Aligned_cols=73 Identities=21% Similarity=0.264 Sum_probs=56.9
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
.+.|+...+.||++|.+.... .....+++.|..+++.+ ++||+.--=|..+.++..+..+|||+|.+.-.++.
T Consensus 73 ~~~A~~~~~~GA~aisvlte~----~~f~g~~~~l~~v~~~v--~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l~ 145 (260)
T PRK00278 73 VEIAKAYEAGGAACLSVLTDE----RFFQGSLEYLRAARAAV--SLPVLRKDFIIDPYQIYEARAAGADAILLIVAALD 145 (260)
T ss_pred HHHHHHHHhCCCeEEEEeccc----ccCCCCHHHHHHHHHhc--CCCEEeeeecCCHHHHHHHHHcCCCEEEEEeccCC
Confidence 466888899999999874321 11123478888888887 89999877788899999999999999999766654
No 432
>PLN02535 glycolate oxidase
Probab=93.56 E-value=0.54 Score=45.48 Aligned_cols=91 Identities=22% Similarity=0.356 Sum_probs=61.5
Q ss_pred CHHHHHHHHHhcCCCEEEecc------CCHHHHHHHHHcCCCEEEEcC----CCCCC--------------CC-------
Q 020636 213 SWKDVKWLQTITKLPILVKGV------LTAEDARIAVQAGAAGIIVSN----HGARQ--------------LD------- 261 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~i------~~~e~a~~~~~~Gad~i~vs~----~gg~~--------------~~------- 261 (323)
++|+| .+..+.|.++..- .+.+..+++.++|+.+|++.- .|.|. ..
T Consensus 114 slEev---a~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~ 190 (364)
T PLN02535 114 TVEEV---ASSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEV 190 (364)
T ss_pred CHHHH---HhcCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCC
Confidence 44554 4444567777643 244557889999999998832 11110 00
Q ss_pred ----------------CCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 262 ----------------YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 262 ----------------~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
....+++.+..+++.. +.|||+ .||-+++|+.++..+|+|+|.+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~--~~Pviv-KgV~~~~dA~~a~~~GvD~I~vs 251 (364)
T PLN02535 191 VSDKGSGLEAFASETFDASLSWKDIEWLRSIT--NLPILI-KGVLTREDAIKAVEVGVAGIIVS 251 (364)
T ss_pred CccccccHHHHHHhccCCCCCHHHHHHHHhcc--CCCEEE-ecCCCHHHHHHHHhcCCCEEEEe
Confidence 0123466777777765 789888 67999999999999999999885
No 433
>PLN02334 ribulose-phosphate 3-epimerase
Probab=93.49 E-value=5.5 Score=35.76 Aligned_cols=95 Identities=12% Similarity=-0.012 Sum_probs=56.4
Q ss_pred CHHHHHHHHHhcCCCEEEecc-CCH-HHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCC
Q 020636 213 SWKDVKWLQTITKLPILVKGV-LTA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~i-~~~-e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
..+.++++++.++.|+-+... .++ +....+.++|||+|.+ |.+. +........+..+++. .+-+-.+-.-.
T Consensus 53 g~~~~~~l~~~~~~~~~vhlmv~~p~d~~~~~~~~gad~v~v--H~~q--~~~d~~~~~~~~i~~~---g~~iGls~~~~ 125 (229)
T PLN02334 53 GPPVVKALRKHTDAPLDCHLMVTNPEDYVPDFAKAGASIFTF--HIEQ--ASTIHLHRLIQQIKSA---GMKAGVVLNPG 125 (229)
T ss_pred CHHHHHHHHhcCCCcEEEEeccCCHHHHHHHHHHcCCCEEEE--eecc--ccchhHHHHHHHHHHC---CCeEEEEECCC
Confidence 347888898887777655543 344 4477888999999988 4441 0111233455555432 23233333333
Q ss_pred CHHHHHHHHHcC--CCEEEEcccccc
Q 020636 291 RGTDVFKALALG--ASGIFVSIMPCQ 314 (323)
Q Consensus 291 ~~~di~kal~lG--Ad~V~iG~~~~~ 314 (323)
|..+..+.+..+ +|.+++|..+-+
T Consensus 126 t~~~~~~~~~~~~~~Dyi~~~~v~pg 151 (229)
T PLN02334 126 TPVEAVEPVVEKGLVDMVLVMSVEPG 151 (229)
T ss_pred CCHHHHHHHHhccCCCEEEEEEEecC
Confidence 666666666544 999999876643
No 434
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=93.48 E-value=0.67 Score=43.11 Aligned_cols=82 Identities=26% Similarity=0.358 Sum_probs=60.0
Q ss_pred CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCC----CCCCCcchHH----HHHHHHHHhcCCCeEEEec--CCCCHHH
Q 020636 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIM----ALEEVVKATQGRIPVFLDG--GVRRGTD 294 (323)
Q Consensus 225 ~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~----~~~~~~~~~~----~l~~i~~~~~~~~pvia~G--GI~~~~d 294 (323)
+.|+++-++.++-.|+.+.++|++++.+|++|-. -.|.+..+++ ...+|.+.+ ++||++|. |..++..
T Consensus 17 ~~~~~~pg~~d~~sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~--~lPv~vD~dtGfG~~~n 94 (289)
T COG2513 17 GDPLVLPGAWDAGSALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAV--DLPVLVDIDTGFGEALN 94 (289)
T ss_pred CCCEEecCCcCHHHHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhc--CCceEEeccCCCCcHHH
Confidence 4688888999999999999999999999986521 2455555443 345555555 89999975 6666444
Q ss_pred H----HHHHHcCCCEEEE
Q 020636 295 V----FKALALGASGIFV 308 (323)
Q Consensus 295 i----~kal~lGAd~V~i 308 (323)
+ .+++..|+.++.|
T Consensus 95 vartV~~~~~aG~agi~i 112 (289)
T COG2513 95 VARTVRELEQAGAAGIHI 112 (289)
T ss_pred HHHHHHHHHHcCcceeee
Confidence 3 4556689999987
No 435
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=93.38 E-value=2.1 Score=41.42 Aligned_cols=160 Identities=19% Similarity=0.220 Sum_probs=85.9
Q ss_pred CcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEe
Q 020636 77 APTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (323)
Q Consensus 77 aPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~it 156 (323)
+|-++.++.. ++-..+.+.|.++|++++.+-+...+++.+.+..+ ++|+-.. +- ...++++.+.+.|- .+++.
T Consensus 159 sp~~f~g~~~-e~l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~vd---~lkI~s~-~~-~n~~LL~~~a~~gk-PVilk 231 (360)
T PRK12595 159 SPYDFQGLGV-EGLKILKQVADEYGLAVISEIVNPADVEVALDYVD---VIQIGAR-NM-QNFELLKAAGRVNK-PVLLK 231 (360)
T ss_pred CCccccCCCH-HHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHHhCC---eEEECcc-cc-cCHHHHHHHHccCC-cEEEe
Confidence 3445665543 56669999999999999887777777777766532 6666321 11 11356776666664 34433
Q ss_pred cCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEecc---
Q 020636 157 VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV--- 233 (323)
Q Consensus 157 vd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i--- 233 (323)
-+. . ....|+..... .+.. .+ ..++.-.. .+...|. .....++++..+..+++.+++||++--.
T Consensus 232 ~G~--~-~t~~e~~~Ave---~i~~---~G--n~~i~L~e-rg~s~yp-~~~~~~ldl~~i~~lk~~~~~PV~~d~~Hs~ 298 (360)
T PRK12595 232 RGL--S-ATIEEFIYAAE---YIMS---QG--NGQIILCE-RGIRTYE-KATRNTLDISAVPILKQETHLPVMVDVTHST 298 (360)
T ss_pred CCC--C-CCHHHHHHHHH---HHHH---CC--CCCEEEEC-CccCCCC-CCCCCCcCHHHHHHHHHHhCCCEEEeCCCCC
Confidence 322 1 01222222110 0000 00 00000000 0000010 0112346788899999989999988311
Q ss_pred --C--CHHHHHHHHHcCCCEEEEcCCC
Q 020636 234 --L--TAEDARIAVQAGAAGIIVSNHG 256 (323)
Q Consensus 234 --~--~~e~a~~~~~~Gad~i~vs~~g 256 (323)
. .+..++.+..+|||++++--|-
T Consensus 299 G~r~~~~~~a~aAva~GAdg~~iE~H~ 325 (360)
T PRK12595 299 GRRDLLLPTAKAALAIGADGVMAEVHP 325 (360)
T ss_pred cchhhHHHHHHHHHHcCCCeEEEEecC
Confidence 1 1235788899999999987775
No 436
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=93.35 E-value=2.8 Score=40.09 Aligned_cols=143 Identities=15% Similarity=0.164 Sum_probs=85.2
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
..|.+...++++.|.++|++++=+.. ++..++-. +.... . .+...+ ...+....+.+. .-.
T Consensus 12 ~Gdl~~A~~lI~~A~~aGadaVKfQt------~~~~~~~~----~~~~~-~---~~~~~~--~~~~~~~~~~~~---~~~ 72 (329)
T TIGR03569 12 NGSLELAKKLVDAAAEAGADAVKFQT------FKAEDLVS----KNAPK-A---EYQKIN--TGAEESQLEMLK---KLE 72 (329)
T ss_pred cCcHHHHHHHHHHHHHhCCCEEEeee------CCHHHhhC----ccccc-c---cccccC--CcCCCcHHHHHH---HhC
Confidence 46788889999999999999875432 11222211 00000 0 000000 000111111111 233
Q ss_pred cCHHHHHHHHH---hcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecC
Q 020636 212 LSWKDVKWLQT---ITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (323)
Q Consensus 212 ~~~~~i~~i~~---~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GG 288 (323)
+.++..+++.+ ..++++ +-.+.+.+.+..+.+.|++.+.+... ....+.+|..+.+. ..|||.+-|
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~-~stpfd~~svd~l~~~~v~~~KIaS~-------~~~n~pLL~~~A~~---gkPvilStG 141 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEF-LSTPFDLESADFLEDLGVPRFKIPSG-------EITNAPLLKKIARF---GKPVILSTG 141 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcE-EEEeCCHHHHHHHHhcCCCEEEECcc-------cccCHHHHHHHHhc---CCcEEEECC
Confidence 56666555554 446654 44567889999999999999998431 23456777777653 689999999
Q ss_pred CCCHHHHHHHHH----cCCC
Q 020636 289 VRRGTDVFKALA----LGAS 304 (323)
Q Consensus 289 I~~~~di~kal~----lGAd 304 (323)
..+.+++..|+. .|..
T Consensus 142 matl~Ei~~Av~~i~~~G~~ 161 (329)
T TIGR03569 142 MATLEEIEAAVGVLRDAGTP 161 (329)
T ss_pred CCCHHHHHHHHHHHHHcCCC
Confidence 999999998875 4664
No 437
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=93.24 E-value=7 Score=36.27 Aligned_cols=190 Identities=17% Similarity=0.167 Sum_probs=105.3
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCceee--cC---CCCCCHHHHH-------hcCC--CceeEEeeecCChHH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------STGP--GIRFFQLYVYKDRNV 137 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s~---~s~~~~eei~-------~~~~--~~~~~QLy~~~d~~~ 137 (323)
.|.++.|+.-.+-.+.++-..+.+-..+.|+...+ ++ +.+.+.+|-. +..+ .+.++++- ..+-+.
T Consensus 6 ~~~~~TPf~~dg~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~-~~st~~ 84 (289)
T PF00701_consen 6 FPALITPFNADGSIDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVG-ANSTEE 84 (289)
T ss_dssp EEEE---BETTSSB-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEE-SSSHHH
T ss_pred eeeeeCCCCCCcCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCc-chhHHH
Confidence 35667776544333444445777777788875443 22 2234555422 2222 35666664 346677
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHH
Q 020636 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (323)
Q Consensus 138 ~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (323)
..++++.++++|++++.+.- |.... . ...+ ..+..
T Consensus 85 ~i~~a~~a~~~Gad~v~v~~--P~~~~--------------~----------------s~~~-------------l~~y~ 119 (289)
T PF00701_consen 85 AIELARHAQDAGADAVLVIP--PYYFK--------------P----------------SQEE-------------LIDYF 119 (289)
T ss_dssp HHHHHHHHHHTT-SEEEEEE--STSSS--------------C----------------CHHH-------------HHHHH
T ss_pred HHHHHHHHhhcCceEEEEec--ccccc--------------c----------------hhhH-------------HHHHH
Confidence 77888999999999998753 33100 0 0011 12345
Q ss_pred HHHHHhcCCCEEEecc-------CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCC
Q 020636 218 KWLQTITKLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 218 ~~i~~~~~~pv~vK~i-------~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
+.+.+.++.|+++=.. .+++...++.+.. ..+-+-. .. .++..+.++.+....++.|+ .|
T Consensus 120 ~~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~~~-nv~giK~-------s~-~~~~~~~~~~~~~~~~~~v~-~G--- 186 (289)
T PF00701_consen 120 RAIADATDLPIIIYNNPARTGNDLSPETLARLAKIP-NVVGIKD-------SS-GDLERLIQLLRAVGPDFSVF-CG--- 186 (289)
T ss_dssp HHHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHTST-TEEEEEE-------SS-SBHHHHHHHHHHSSTTSEEE-ES---
T ss_pred HHHHhhcCCCEEEEECCCccccCCCHHHHHHHhcCC-cEEEEEc-------Cc-hhHHHHHHHhhhcccCeeee-cc---
Confidence 6677778899988743 4667777776632 2222211 11 23344555555555455544 44
Q ss_pred CHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 291 RGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
+...+..++.+|+++++.|..-+....+.+
T Consensus 187 ~d~~~~~~l~~G~~G~is~~~n~~P~~~~~ 216 (289)
T PF00701_consen 187 DDELLLPALAAGADGFISGLANVFPELIVE 216 (289)
T ss_dssp SGGGHHHHHHTTSSEEEESGGGTHHHHHHH
T ss_pred ccccccccccccCCEEEEcccccChHHHHH
Confidence 445578899999999999987554444433
No 438
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=93.22 E-value=2.9 Score=35.34 Aligned_cols=96 Identities=18% Similarity=0.086 Sum_probs=59.5
Q ss_pred HHHHHHHHhcCCCEEEecc-CCHHH-----HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecC
Q 020636 215 KDVKWLQTITKLPILVKGV-LTAED-----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~vK~i-~~~e~-----a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GG 288 (323)
+.+..+++..+.|+++... ....+ ++.+.++|+|+|.+....+.. ..-..+.+.++++.+ .+++++..-.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~~~~~~---~~~~~~~~~~i~~~~-~~~~v~~~~~ 122 (200)
T cd04722 47 EVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHGAVGYL---AREDLELIRELREAV-PDVKVVVKLS 122 (200)
T ss_pred cHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEeccCCcH---HHHHHHHHHHHHHhc-CCceEEEEEC
Confidence 4566777777889888754 22222 468899999999986432210 011345666666665 2577777655
Q ss_pred CCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 289 VRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 289 I~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
.....+...+...|++.+.+......
T Consensus 123 ~~~~~~~~~~~~~g~d~i~~~~~~~~ 148 (200)
T cd04722 123 PTGELAAAAAEEAGVDEVGLGNGGGG 148 (200)
T ss_pred CCCccchhhHHHcCCCEEEEcCCcCC
Confidence 44433322246789999999776543
No 439
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=93.21 E-value=0.71 Score=44.68 Aligned_cols=42 Identities=31% Similarity=0.478 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 266 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 266 ~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
+++.|..+++.. ++|||+ .||.+++|+.+++.+|+|+|.+..
T Consensus 212 tW~di~wlr~~~--~~Piiv-KgV~~~~dA~~a~~~Gvd~I~Vsn 253 (367)
T PLN02493 212 SWKDVQWLQTIT--KLPILV-KGVLTGEDARIAIQAGAAGIIVSN 253 (367)
T ss_pred CHHHHHHHHhcc--CCCEEe-ecCCCHHHHHHHHHcCCCEEEECC
Confidence 466677777766 799988 568899999999999999999953
No 440
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=93.14 E-value=0.86 Score=42.72 Aligned_cols=83 Identities=23% Similarity=0.197 Sum_probs=58.5
Q ss_pred CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCC----CCCCCcchH----HHHHHHHHHhcCCCeEEEec--CCCCHHH
Q 020636 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATI----MALEEVVKATQGRIPVFLDG--GVRRGTD 294 (323)
Q Consensus 225 ~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~----~~~~~~~~~----~~l~~i~~~~~~~~pvia~G--GI~~~~d 294 (323)
+.++++-++.+.-.|+.+.++|+++|.+|+++-. ..|++.-++ +.+.+|.+.+ ++||++|. |..+...
T Consensus 14 ~~~~~~pg~~D~lSAri~e~aGf~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~--~lPv~aD~d~GyG~~~~ 91 (290)
T TIGR02321 14 GRLFTAMAAHNPLVAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTV--SIPLIADIDTGFGNAVN 91 (290)
T ss_pred CCCEEeccccCHHHHHHHHHcCCCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCcHH
Confidence 4567777888999999999999999999876411 245543333 3455555555 89999975 6666555
Q ss_pred H----HHHHHcCCCEEEEc
Q 020636 295 V----FKALALGASGIFVS 309 (323)
Q Consensus 295 i----~kal~lGAd~V~iG 309 (323)
+ .++.++|+.++.|-
T Consensus 92 v~~tV~~~~~aGvagi~IE 110 (290)
T TIGR02321 92 VHYVVPQYEAAGASAIVME 110 (290)
T ss_pred HHHHHHHHHHcCCeEEEEe
Confidence 5 34456899999983
No 441
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=93.14 E-value=0.053 Score=46.95 Aligned_cols=141 Identities=20% Similarity=0.238 Sum_probs=78.1
Q ss_pred eeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHH
Q 020636 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV 204 (323)
Q Consensus 125 ~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (323)
.+|=|+ .+-..+.+++++++++| +-++|++|.-. | +. ......+|+
T Consensus 22 ~vfLl~--g~I~~l~~~v~~~~~~g-K~vfVHiDli~-G---------l~---------------------~D~~~i~~L 67 (175)
T PF04309_consen 22 VVFLLT--GDIGNLKDIVKRLKAAG-KKVFVHIDLIE-G---------LS---------------------RDEAGIEYL 67 (175)
T ss_dssp EEEE-S--EECCCHHHHHHHHHHTT--EEEEECCGEE-T---------B----------------------SSHHHHHHH
T ss_pred EEEEEc--CcHHHHHHHHHHHHHcC-CEEEEEehhcC-C---------CC---------------------CCHHHHHHH
Confidence 444444 45666778899999988 56678888522 2 11 001112233
Q ss_pred hhccCCc--c--CHHHHHHHHHhcCCCEEEec----cCCHHH-HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHH
Q 020636 205 AGQIDRS--L--SWKDVKWLQTITKLPILVKG----VLTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVK 275 (323)
Q Consensus 205 ~~~~~~~--~--~~~~i~~i~~~~~~pv~vK~----i~~~e~-a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~ 275 (323)
.....++ . ....++..++. ++.-+-+. ..+.+. .+.+.+...|+|.+- .+ .....+.++.+
T Consensus 68 ~~~~~~dGIISTk~~~i~~Ak~~-gl~tIqRiFliDS~al~~~~~~i~~~~PD~vEil-------Pg--~~p~vi~~i~~ 137 (175)
T PF04309_consen 68 KEYGKPDGIISTKSNLIKRAKKL-GLLTIQRIFLIDSSALETGIKQIEQSKPDAVEIL-------PG--VMPKVIKKIRE 137 (175)
T ss_dssp HHTT--SEEEESSHHHHHHHHHT-T-EEEEEEE-SSHHHHHHHHHHHHHHT-SEEEEE-------SC--CHHHHHCCCCC
T ss_pred HHcCCCcEEEeCCHHHHHHHHHc-CCEEEEEeeeecHHHHHHHHHHHhhcCCCEEEEc-------hH--HHHHHHHHHHH
Confidence 3322222 1 24456666553 55444442 233444 345568999999872 11 11234444444
Q ss_pred HhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccc
Q 020636 276 ATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIM 311 (323)
Q Consensus 276 ~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~ 311 (323)
.+ ++|||+.|=|++.+|+.++|..||.+|.....
T Consensus 138 ~~--~~PiIAGGLI~~~e~v~~al~aGa~aVSTS~~ 171 (175)
T PF04309_consen 138 ET--NIPIIAGGLIRTKEDVEEALKAGADAVSTSNK 171 (175)
T ss_dssp CC--SS-EEEESS--SHHHHHHHCCTTCEEEEE--H
T ss_pred hc--CCCEEeecccCCHHHHHHHHHcCCEEEEcCCh
Confidence 44 69999999999999999999999999988763
No 442
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=93.12 E-value=3.2 Score=39.43 Aligned_cols=78 Identities=23% Similarity=0.265 Sum_probs=57.9
Q ss_pred CCHHHHHHHHH-cCCCEEEEcC---CCCCCC-C---CCcchHHHHHHHHHHhcCCCeEEEecCCCCH-------------
Q 020636 234 LTAEDARIAVQ-AGAAGIIVSN---HGARQL-D---YVPATIMALEEVVKATQGRIPVFLDGGVRRG------------- 292 (323)
Q Consensus 234 ~~~e~a~~~~~-~Gad~i~vs~---~gg~~~-~---~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~------------- 292 (323)
.++++|+...+ .|+|.+-++. ||-... + ...-.++.|.+|.+.++ ++|+..=||=..+
T Consensus 164 T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~-~vPLVLHGgSg~~~~~~~~~~~~g~~ 242 (321)
T PRK07084 164 TQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIP-GFPIVLHGSSSVPQEYVKTINEYGGK 242 (321)
T ss_pred CCHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcC-CCCEEEeCCCCCcHHHHHHHHHhcCc
Confidence 56899887774 7999999874 553321 1 11236789999998873 5999998875333
Q ss_pred ---------HHHHHHHHcCCCEEEEcccc
Q 020636 293 ---------TDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 293 ---------~di~kal~lGAd~V~iG~~~ 312 (323)
+|+.|++.+|..-|=++|-+
T Consensus 243 ~~~~~Gi~~e~~~kai~~GI~KINi~Tdl 271 (321)
T PRK07084 243 LKDAIGIPEEQLRKAAKSAVCKINIDSDG 271 (321)
T ss_pred cccCCCCCHHHHHHHHHcCCceeccchHH
Confidence 88999999999999888755
No 443
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=93.10 E-value=4.9 Score=35.10 Aligned_cols=42 Identities=26% Similarity=0.448 Sum_probs=36.2
Q ss_pred cCHHHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEc
Q 020636 212 LSWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 212 ~~~~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs 253 (323)
..++.++++++..+ .||++-|..+.+++..+.++|+|+|++.
T Consensus 146 ~g~~~~~~~~~~~~~~~v~a~GGI~~~~i~~~~~~Ga~gv~~g 188 (212)
T PRK00043 146 QGLEGLREIRAAVGDIPIVAIGGITPENAPEVLEAGADGVAVV 188 (212)
T ss_pred CCHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEEEe
Confidence 34788999988887 8998887668999999999999999884
No 444
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=93.01 E-value=0.25 Score=44.80 Aligned_cols=43 Identities=30% Similarity=0.444 Sum_probs=38.1
Q ss_pred cCHHHHHHHHHhcCC-CEEEe-ccCCHHHHHHHHHcCCCEEEEcC
Q 020636 212 LSWKDVKWLQTITKL-PILVK-GVLTAEDARIAVQAGAAGIIVSN 254 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~-pv~vK-~i~~~e~a~~~~~~Gad~i~vs~ 254 (323)
.+.+.++.+++.++. |+++. |+.+.++++.+.++|||+|+|.+
T Consensus 170 ~~~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGS 214 (232)
T PRK04169 170 VPPEMVKAVKKALDITPLIYGGGIRSPEQARELMAAGADTIVVGN 214 (232)
T ss_pred CCHHHHHHHHHhcCCCcEEEECCCCCHHHHHHHHHhCCCEEEECh
Confidence 357889999999888 99998 57999999999999999999954
No 445
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=93.00 E-value=0.79 Score=42.87 Aligned_cols=45 Identities=20% Similarity=0.456 Sum_probs=39.5
Q ss_pred CCccCHHHHHHHHHhcCCCEEEecc--CCHHHHHHHHHcCCCEEEEc
Q 020636 209 DRSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 209 ~~~~~~~~i~~i~~~~~~pv~vK~i--~~~e~a~~~~~~Gad~i~vs 253 (323)
.|.+.++.+++|++.+++|+++.|. .+.++.+++.+.|+.-|=+.
T Consensus 187 ~p~L~~~~L~~I~~~~~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~ 233 (285)
T PRK07709 187 EPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKAISLGTSKINVN 233 (285)
T ss_pred CCccCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence 4678899999999999999999987 46788999999999988764
No 446
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=92.98 E-value=2.9 Score=37.50 Aligned_cols=41 Identities=12% Similarity=0.315 Sum_probs=32.5
Q ss_pred CHHHHHHHHHhc-----CCCEEEeccCCHHHHHHHHHcCCCEEEEc
Q 020636 213 SWKDVKWLQTIT-----KLPILVKGVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 213 ~~~~i~~i~~~~-----~~pv~vK~i~~~e~a~~~~~~Gad~i~vs 253 (323)
..+.++++++.. +.|+.+=|..+.+.+..+.++|||++++.
T Consensus 150 ~lekI~~l~~~~~~~~~~~~I~vdGGI~~eni~~l~~aGAd~vVvG 195 (220)
T PRK08883 150 TLDKLRAVRKMIDESGRDIRLEIDGGVKVDNIREIAEAGADMFVAG 195 (220)
T ss_pred HHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEe
Confidence 456677777654 37787777677999999999999999884
No 447
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=92.92 E-value=4.9 Score=36.59 Aligned_cols=40 Identities=25% Similarity=0.243 Sum_probs=31.1
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEec
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~G 287 (323)
.+.++...++|||.|.+-. + +.+...++.+.+ ++|+++.|
T Consensus 159 i~Ra~ay~~AGAd~i~~e~---------~-~~e~~~~i~~~~--~~P~~~~g 198 (240)
T cd06556 159 IADALAYAPAGADLIVMEC---------V-PVELAKQITEAL--AIPLAGIG 198 (240)
T ss_pred HHHHHHHHHcCCCEEEEcC---------C-CHHHHHHHHHhC--CCCEEEEe
Confidence 3457888899999999842 2 677788888887 78998865
No 448
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=92.91 E-value=0.71 Score=43.12 Aligned_cols=45 Identities=18% Similarity=0.460 Sum_probs=39.3
Q ss_pred CCccCHHHHHHHHHhcCCCEEEecc--CCHHHHHHHHHcCCCEEEEc
Q 020636 209 DRSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 209 ~~~~~~~~i~~i~~~~~~pv~vK~i--~~~e~a~~~~~~Gad~i~vs 253 (323)
.|.++++.+++|++.+++|+++.|. .+.++.+++.+.|+.-|=+.
T Consensus 184 ~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~ 230 (282)
T TIGR01858 184 TPKLDFDRLAEIREVVDVPLVLHGASDVPDEDVRRTIELGICKVNVA 230 (282)
T ss_pred CCccCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEeC
Confidence 4778999999999999999999986 46788999999999888664
No 449
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=92.84 E-value=1.7 Score=40.17 Aligned_cols=93 Identities=15% Similarity=0.109 Sum_probs=59.6
Q ss_pred CHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCC----CCCCCcchHHH----HHHHHHHhcCCC-eE
Q 020636 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMA----LEEVVKATQGRI-PV 283 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~----~~~~~~~~~~~----l~~i~~~~~~~~-pv 283 (323)
+...++.+++. +.|+++=++.+.-.|+.+.++|+|.|.++...+. ..|+..-+++. ++.+.+.+ +. +|
T Consensus 3 t~~~lr~~~~~-g~~i~~~tayD~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~--~~p~v 79 (264)
T PRK00311 3 TISDLQKMKQE-GEKIVMLTAYDYPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGA--PRALV 79 (264)
T ss_pred CHHHHHHHHhC-CCCEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcC--CCCcE
Confidence 34455555443 4688888888999999999999999986322110 13444445432 33333333 45 58
Q ss_pred EEecCCC----CHHH----HHHHHH-cCCCEEEE
Q 020636 284 FLDGGVR----RGTD----VFKALA-LGASGIFV 308 (323)
Q Consensus 284 ia~GGI~----~~~d----i~kal~-lGAd~V~i 308 (323)
++|-++. +.++ +.+.+. .||++|-|
T Consensus 80 vaD~pfg~y~~~~~~av~~a~r~~~~aGa~aVki 113 (264)
T PRK00311 80 VADMPFGSYQASPEQALRNAGRLMKEAGAHAVKL 113 (264)
T ss_pred EEeCCCCCccCCHHHHHHHHHHHHHHhCCeEEEE
Confidence 8876644 4466 466777 89999998
No 450
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=92.81 E-value=1.7 Score=41.62 Aligned_cols=41 Identities=20% Similarity=0.239 Sum_probs=34.8
Q ss_pred cCHHHHHHHHHhcCCCEEEec-cCCHHHHHHHHHcC-CCEEEE
Q 020636 212 LSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAG-AAGIIV 252 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~G-ad~i~v 252 (323)
..|+.++.+++.+++||++-| +.++++++.+++.| +|.|.+
T Consensus 272 ~~~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~ 314 (343)
T cd04734 272 PFLPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGM 314 (343)
T ss_pred hhHHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeeee
Confidence 457888999999999998876 68999999999865 999976
No 451
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=92.79 E-value=0.61 Score=44.74 Aligned_cols=74 Identities=20% Similarity=0.173 Sum_probs=45.0
Q ss_pred HHHHHH--cCCCEEEEcCCCCC----CCC------CCcchHHHHHHHHHHhcCCCeEEE-ecCCCCHHHHHH----HHHc
Q 020636 239 ARIAVQ--AGAAGIIVSNHGAR----QLD------YVPATIMALEEVVKATQGRIPVFL-DGGVRRGTDVFK----ALAL 301 (323)
Q Consensus 239 a~~~~~--~Gad~i~vs~~gg~----~~~------~~~~~~~~l~~i~~~~~~~~pvia-~GGI~~~~di~k----al~l 301 (323)
++.+.+ .|+|.+.+---+.. ..+ ......+.+.++.+.+ .+|++. +||+ +.+++++ |+..
T Consensus 190 ~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~--~~P~vvlsgG~-~~~~f~~~l~~A~~a 266 (340)
T PRK12858 190 MEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDAT--DLPFIFLSAGV-SPELFRRTLEFACEA 266 (340)
T ss_pred HHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhC--CCCEEEECCCC-CHHHHHHHHHHHHHc
Confidence 566664 99999998432110 000 1111224566666655 677665 7777 6666665 4457
Q ss_pred CC--CEEEEccccccC
Q 020636 302 GA--SGIFVSIMPCQC 315 (323)
Q Consensus 302 GA--d~V~iG~~~~~~ 315 (323)
|| .+|.+||.....
T Consensus 267 Ga~f~Gvl~GRniwq~ 282 (340)
T PRK12858 267 GADFSGVLCGRATWQD 282 (340)
T ss_pred CCCccchhhhHHHHhh
Confidence 99 999999976543
No 452
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=92.77 E-value=6.5 Score=34.64 Aligned_cols=129 Identities=18% Similarity=0.078 Sum_probs=76.6
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
..|.....+.++++.+.|++.+-+.+--.. | .| +..
T Consensus 12 ~~~~~~~~~~~~~~~~~G~~~i~l~~~d~~-----------~-~~--------------------------------~~~ 47 (220)
T PRK05581 12 SADFARLGEEVKAVEAAGADWIHVDVMDGH-----------F-VP--------------------------------NLT 47 (220)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeCccCC-----------c-CC--------------------------------CcC
Confidence 356667778889999999998875320000 0 00 111
Q ss_pred cCHHHHHHHHHhcCCCEEE--eccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCC
Q 020636 212 LSWKDVKWLQTITKLPILV--KGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~v--K~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI 289 (323)
+..+.++++++.++.|+.+ +.-...+....+.++|+|+|.+ |++.. ......++.+++ . .+.+..+-+-
T Consensus 48 ~~~~~~~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~g~d~v~v--h~~~~----~~~~~~~~~~~~-~--~~~~g~~~~~ 118 (220)
T PRK05581 48 IGPPVVEAIRKVTKLPLDVHLMVENPDRYVPDFAKAGADIITF--HVEAS----EHIHRLLQLIKS-A--GIKAGLVLNP 118 (220)
T ss_pred cCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEE--eeccc----hhHHHHHHHHHH-c--CCEEEEEECC
Confidence 3466788888766544323 2223344567778999999988 44410 112233433332 2 4444444456
Q ss_pred CCHHHHHHHHHcCCCEEEEccccc
Q 020636 290 RRGTDVFKALALGASGIFVSIMPC 313 (323)
Q Consensus 290 ~~~~di~kal~lGAd~V~iG~~~~ 313 (323)
.+..+..+.+..++|.+.+++...
T Consensus 119 ~t~~e~~~~~~~~~d~i~~~~~~~ 142 (220)
T PRK05581 119 ATPLEPLEDVLDLLDLVLLMSVNP 142 (220)
T ss_pred CCCHHHHHHHHhhCCEEEEEEECC
Confidence 677788888877899988876443
No 453
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=92.76 E-value=1 Score=39.35 Aligned_cols=117 Identities=23% Similarity=0.212 Sum_probs=76.4
Q ss_pred eEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHh
Q 020636 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (323)
Q Consensus 126 ~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (323)
.+-+....+.+...+.++.+-+.|++.+-++...+.
T Consensus 14 ~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~-------------------------------------------- 49 (187)
T PRK07455 14 AIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQ-------------------------------------------- 49 (187)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCC--------------------------------------------
Confidence 444555678888888888888999998887643221
Q ss_pred hccCCccCHHHHHHHHHhcCCC-EEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 206 GQIDRSLSWKDVKWLQTITKLP-ILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 206 ~~~~~~~~~~~i~~i~~~~~~p-v~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
..+.++.+++..+.- +-...+.+.++++.+.++|+|+|++ +|-+ .+.+ +..+.. .++.+
T Consensus 50 -------~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAdgv~~-p~~~---------~~~~-~~~~~~--~~~~i 109 (187)
T PRK07455 50 -------PAELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQFCFT-PHVD---------PELI-EAAVAQ--DIPII 109 (187)
T ss_pred -------HHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCCEEEC-CCCC---------HHHH-HHHHHc--CCCEE
Confidence 123345555543321 1122346779999999999999954 2221 1222 233333 45544
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEE
Q 020636 285 LDGGVRRGTDVFKALALGASGIFV 308 (323)
Q Consensus 285 a~GGI~~~~di~kal~lGAd~V~i 308 (323)
. | +.|..++.++..+|||.|.+
T Consensus 110 ~-G-~~t~~e~~~A~~~Gadyv~~ 131 (187)
T PRK07455 110 P-G-ALTPTEIVTAWQAGASCVKV 131 (187)
T ss_pred c-C-cCCHHHHHHHHHCCCCEEEE
Confidence 3 4 99999999999999999987
No 454
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=92.76 E-value=0.85 Score=42.65 Aligned_cols=45 Identities=18% Similarity=0.441 Sum_probs=39.3
Q ss_pred CCccCHHHHHHHHHhcCCCEEEecc--CCHHHHHHHHHcCCCEEEEc
Q 020636 209 DRSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 209 ~~~~~~~~i~~i~~~~~~pv~vK~i--~~~e~a~~~~~~Gad~i~vs 253 (323)
.|.++++.+++|++.+++|+++.|. .+.++.+++.+.|+.-|=+.
T Consensus 186 ~p~Ld~~~L~~I~~~~~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi~ 232 (284)
T PRK12737 186 EPKLDFERLAEIREKVSIPLVLHGASGVPDEDVKKAISLGICKVNVA 232 (284)
T ss_pred CCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHCCCeEEEeC
Confidence 4678999999999999999999987 46788999999999888764
No 455
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=92.73 E-value=1.2 Score=42.17 Aligned_cols=173 Identities=21% Similarity=0.259 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHcC-Ccee---ecCCCCC----------CHHHH----HhcCCCceeEEeeecCChHHHHHHHHHHHHcC
Q 020636 88 EGEYATARAASAAG-TIMT---LSSWSTS----------SVEEV----ASTGPGIRFFQLYVYKDRNVVAQLVRRAERAG 149 (323)
Q Consensus 88 ~~e~~~a~aa~~~G-~~~~---vs~~s~~----------~~eei----~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G 149 (323)
+.-...++...+++ ..++ +|+-.+. .++++ .+....|.++.|-+ +.+.+.++++.++++|
T Consensus 109 ~~~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P--~~~di~~iA~~~~~~g 186 (310)
T COG0167 109 EAWADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAATKVPVFVKLAP--NITDIDEIAKAAEEAG 186 (310)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhcccCceEEEeCC--CHHHHHHHHHHHHHcC
Confidence 44457777777777 3333 3332111 12222 22233578888864 7888889999999999
Q ss_pred CcEEEEecCCCCCCchH-HHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcC--C
Q 020636 150 FKAIALTVDTPRLGRRE-ADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITK--L 226 (323)
Q Consensus 150 ~~al~itvd~p~~g~r~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~--~ 226 (323)
+++++++ ++-.. |. -|.... +....+ ..+-+ .+..+ .....+.|+++++.++ +
T Consensus 187 ~Dgl~~~-NT~~~--~~~id~~~~-----~~~~~~----~~GGL---SG~~i---------kp~al~~v~~l~~~~~~~i 242 (310)
T COG0167 187 ADGLIAI-NTTKS--GMKIDLETK-----KPVLAN----ETGGL---SGPPL---------KPIALRVVAELYKRLGGDI 242 (310)
T ss_pred CcEEEEE-eeccc--ccccccccc-----ccccCc----CCCCc---Ccccc---------hHHHHHHHHHHHHhcCCCC
Confidence 9998864 32221 11 111100 000000 00000 00000 1134677888888876 8
Q ss_pred CEE-EeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchH-HHHHHHHHHhcCCCeEEEecCCCCHHHHH
Q 020636 227 PIL-VKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKATQGRIPVFLDGGVRRGTDVF 296 (323)
Q Consensus 227 pv~-vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~-~~l~~i~~~~~~~~pvia~GGI~~~~di~ 296 (323)
||+ +.||.|.+||.+-+.+||+.|-|... -...++.-+ +....+.+.+ -.-|+.|-+|+.
T Consensus 243 pIIGvGGI~s~~DA~E~i~aGA~~vQv~Ta---l~~~Gp~i~~~I~~~l~~~l-------~~~g~~si~d~i 304 (310)
T COG0167 243 PIIGVGGIETGEDALEFILAGASAVQVGTA---LIYKGPGIVKEIIKGLARWL-------EEKGFESIQDII 304 (310)
T ss_pred cEEEecCcCcHHHHHHHHHcCCchheeeee---eeeeCchHHHHHHHHHHHHH-------HHcCCCCHHHHh
Confidence 865 55789999999999999999987431 112223333 2233333333 235677777765
No 456
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=92.71 E-value=3.3 Score=38.29 Aligned_cols=40 Identities=28% Similarity=0.346 Sum_probs=31.4
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEec
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~G 287 (323)
.++|+.+.++|||.|++-+ .++ +...++.+.+ ++|+|.-|
T Consensus 164 i~ra~a~~eAGA~~i~lE~---------v~~-~~~~~i~~~l--~iP~igiG 203 (264)
T PRK00311 164 LEDAKALEEAGAFALVLEC---------VPA-ELAKEITEAL--SIPTIGIG 203 (264)
T ss_pred HHHHHHHHHCCCCEEEEcC---------CCH-HHHHHHHHhC--CCCEEEec
Confidence 4668888999999999843 334 7888888888 79999755
No 457
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=92.65 E-value=2 Score=41.11 Aligned_cols=41 Identities=24% Similarity=0.263 Sum_probs=35.0
Q ss_pred cCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcC-CCEEEE
Q 020636 212 LSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAG-AAGIIV 252 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~G-ad~i~v 252 (323)
+.++..+.+|+.+++||++-|-.++++++.+++.| +|.|.+
T Consensus 272 ~~~~~~~~ik~~~~ipvi~~G~i~~~~a~~~l~~g~~D~V~~ 313 (338)
T cd02933 272 QPPDFLDFLRKAFKGPLIAAGGYDAESAEAALADGKADLVAF 313 (338)
T ss_pred cchHHHHHHHHHcCCCEEEECCCCHHHHHHHHHcCCCCEEEe
Confidence 46778889999999999888766699999999876 999977
No 458
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=92.62 E-value=0.56 Score=43.13 Aligned_cols=82 Identities=17% Similarity=0.157 Sum_probs=54.8
Q ss_pred CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCC----CCCCCcchHHH----HHHHHHHhcCCCe-EEEecC---CCC-
Q 020636 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMA----LEEVVKATQGRIP-VFLDGG---VRR- 291 (323)
Q Consensus 225 ~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~----~~~~~~~~~~~----l~~i~~~~~~~~p-via~GG---I~~- 291 (323)
+.|+++=++.+.-.|+.+.++|+|.|.++...+. ..|+...+++. ++.+.+.+ +.| |++|-+ ..+
T Consensus 11 ~~~l~~~~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~--~~p~viaD~~fg~y~~~ 88 (254)
T cd06557 11 GEKIVMLTAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGA--PRALVVADMPFGSYQTS 88 (254)
T ss_pred CCcEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcC--CCCeEEEeCCCCcccCC
Confidence 5688888888999999999999999975322111 23454445432 33333333 678 888765 444
Q ss_pred HHH----HHHHHH-cCCCEEEE
Q 020636 292 GTD----VFKALA-LGASGIFV 308 (323)
Q Consensus 292 ~~d----i~kal~-lGAd~V~i 308 (323)
.++ +.+.+. .||++|-|
T Consensus 89 ~~~av~~a~r~~~~aGa~aVki 110 (254)
T cd06557 89 PEQALRNAARLMKEAGADAVKL 110 (254)
T ss_pred HHHHHHHHHHHHHHhCCeEEEE
Confidence 333 567777 99999998
No 459
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=92.61 E-value=5 Score=36.81 Aligned_cols=157 Identities=18% Similarity=0.189 Sum_probs=81.1
Q ss_pred CcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEe
Q 020636 77 APTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (323)
Q Consensus 77 aPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~it 156 (323)
||-++.+++. ++=..+.+.++++|++++..-+....++.+.+. .-++|+-.. + -...++++.+.+.|- .+++.
T Consensus 56 s~~sf~G~G~-~gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e~---vdilqIgs~-~-~~n~~LL~~va~tgk-PVilk 128 (250)
T PRK13397 56 SAASFQGLGL-QGIRYLHEVCQEFGLLSVSEIMSERQLEEAYDY---LDVIQVGAR-N-MQNFEFLKTLSHIDK-PILFK 128 (250)
T ss_pred CCcccCCCCH-HHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHhc---CCEEEECcc-c-ccCHHHHHHHHccCC-eEEEe
Confidence 4545555543 455688999999999988776666666766653 236666321 1 111356666655553 33333
Q ss_pred cCCCCCCchHHHHhhccCCCCcccc---ccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEecc
Q 020636 157 VDTPRLGRREADIKNRFTLPPFLTL---KNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV 233 (323)
Q Consensus 157 vd~p~~g~r~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i 233 (323)
-+ .. ....|+.+... ++.. .++.-...+ ...|. .......+...+..+++.++.||++--.
T Consensus 129 ~G--~~-~t~~e~~~A~e---~i~~~Gn~~i~L~eRg---------~~~Y~-~~~~n~~dl~ai~~lk~~~~lPVivd~S 192 (250)
T PRK13397 129 RG--LM-ATIEEYLGALS---YLQDTGKSNIILCERG---------VRGYD-VETRNMLDIMAVPIIQQKTDLPIIVDVS 192 (250)
T ss_pred CC--CC-CCHHHHHHHHH---HHHHcCCCeEEEEccc---------cCCCC-CccccccCHHHHHHHHHHhCCCeEECCC
Confidence 22 11 11122221110 0000 000000000 00010 0001134566788888888999988633
Q ss_pred C-------CHHHHHHHHHcCCCEEEEcCCC
Q 020636 234 L-------TAEDARIAVQAGAAGIIVSNHG 256 (323)
Q Consensus 234 ~-------~~e~a~~~~~~Gad~i~vs~~g 256 (323)
. -+.-++.+..+|||++++--|-
T Consensus 193 Hs~G~r~~v~~~a~AAvA~GAdGl~IE~H~ 222 (250)
T PRK13397 193 HSTGRRDLLLPAAKIAKAVGANGIMMEVHP 222 (250)
T ss_pred CCCcccchHHHHHHHHHHhCCCEEEEEecC
Confidence 1 1355889999999988886664
No 460
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=92.58 E-value=2.9 Score=37.00 Aligned_cols=42 Identities=29% Similarity=0.317 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccc
Q 020636 269 ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 269 ~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~ 312 (323)
++.++++.. ++.|+-+-=||.+++++...=.- ||+|.+|+.+
T Consensus 197 L~qrvrk~t-~dtPlAVGFGvst~EHf~qVgsv-aDGVvvGSki 238 (268)
T KOG4175|consen 197 LLQRVRKAT-GDTPLAVGFGVSTPEHFKQVGSV-ADGVVVGSKI 238 (268)
T ss_pred HHHHHHHhc-CCCceeEeeccCCHHHHHhhhhh-ccceEecHHH
Confidence 455555554 37898887799999998765444 9999999865
No 461
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=92.54 E-value=0.91 Score=42.46 Aligned_cols=45 Identities=13% Similarity=0.398 Sum_probs=39.1
Q ss_pred CCccCHHHHHHHHHhcCCCEEEecc--CCHHHHHHHHHcCCCEEEEc
Q 020636 209 DRSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 209 ~~~~~~~~i~~i~~~~~~pv~vK~i--~~~e~a~~~~~~Gad~i~vs 253 (323)
.|.++++.+++|++.+++|+++.|. ...++.+++.+.|+.-|=+.
T Consensus 186 ~p~Ldfd~l~~I~~~~~vPLVLHGgSG~~~e~~~kai~~GI~KiNi~ 232 (286)
T PRK12738 186 TPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVA 232 (286)
T ss_pred CCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence 4678899999999999999999986 45788999999999888664
No 462
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=92.50 E-value=5.1 Score=34.17 Aligned_cols=42 Identities=26% Similarity=0.461 Sum_probs=35.9
Q ss_pred cCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEc
Q 020636 212 LSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs 253 (323)
..++.++++++..+.|+++-|..+.+++..+.++|+|++.+.
T Consensus 137 ~~~~~~~~~~~~~~~pv~a~GGi~~~~i~~~~~~Ga~~i~~g 178 (196)
T cd00564 137 LGLELLREIAELVEIPVVAIGGITPENAAEVLAAGADGVAVI 178 (196)
T ss_pred CCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCEEEEe
Confidence 457888888887789998877667899999999999999884
No 463
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=92.31 E-value=1 Score=42.07 Aligned_cols=45 Identities=18% Similarity=0.447 Sum_probs=39.5
Q ss_pred CCccCHHHHHHHHHhcCCCEEEecc--CCHHHHHHHHHcCCCEEEEc
Q 020636 209 DRSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 209 ~~~~~~~~i~~i~~~~~~pv~vK~i--~~~e~a~~~~~~Gad~i~vs 253 (323)
.|.++++.+++|++.+++|+++.|. .+.++.+++.+.|+.-|=+.
T Consensus 186 ~p~Ld~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~ 232 (284)
T PRK12857 186 EPKLDFDRLAKIKELVNIPIVLHGSSGVPDEAIRKAISLGVRKVNID 232 (284)
T ss_pred CCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence 4778999999999999999999987 46788999999999888764
No 464
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=92.31 E-value=2.6 Score=35.24 Aligned_cols=87 Identities=23% Similarity=0.213 Sum_probs=58.6
Q ss_pred HHHHHHHHHhcCCCEEEecc-CCHHH-HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHh----cCCCeEEEec
Q 020636 214 WKDVKWLQTITKLPILVKGV-LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT----QGRIPVFLDG 287 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK~i-~~~e~-a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~----~~~~pvia~G 287 (323)
-+.+..+-+..+.-++.-+. .++++ +..|++..+|.|.+|..-|. ..++.+.+.+.+ .+++. +..|
T Consensus 29 akvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~-------h~~l~~~lve~lre~G~~~i~-v~~G 100 (143)
T COG2185 29 AKVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDGG-------HLTLVPGLVEALREAGVEDIL-VVVG 100 (143)
T ss_pred hHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEeccch-------HHHHHHHHHHHHHHhCCcceE-Eeec
Confidence 34555554555766776665 56766 56667999999999875432 234444444444 12444 4679
Q ss_pred CCCCHHHHHHHHHcCCCEEEE
Q 020636 288 GVRRGTDVFKALALGASGIFV 308 (323)
Q Consensus 288 GI~~~~di~kal~lGAd~V~i 308 (323)
|+-.++|..+..++|.+.+.-
T Consensus 101 Gvip~~d~~~l~~~G~~~if~ 121 (143)
T COG2185 101 GVIPPGDYQELKEMGVDRIFG 121 (143)
T ss_pred CccCchhHHHHHHhCcceeeC
Confidence 999999998888899998864
No 465
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=92.31 E-value=10 Score=36.24 Aligned_cols=195 Identities=18% Similarity=0.220 Sum_probs=103.2
Q ss_pred ceEECcccccccCCcHHH----HHHHHHHHHcCCcee-ecCCCCCCHHHHHhc-CCC-ce-----e-----EEeee--cC
Q 020636 73 PIMIAPTAMQKMAHPEGE----YATARAASAAGTIMT-LSSWSTSSVEEVAST-GPG-IR-----F-----FQLYV--YK 133 (323)
Q Consensus 73 Pi~iaPm~~~~l~~~~~e----~~~a~aa~~~G~~~~-vs~~s~~~~eei~~~-~~~-~~-----~-----~QLy~--~~ 133 (323)
|++||=+|.. | +|+ ..+.++|+++|.-.+ +=+ ...+++... .+. .+ | +.+|- .-
T Consensus 1 ~~iIAEig~N---H-~Gdl~~A~~lI~~A~~aGadaVKfQt---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 73 (329)
T TIGR03569 1 TFIIAEAGVN---H-NGSLELAKKLVDAAAEAGADAVKFQT---FKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLEL 73 (329)
T ss_pred CEEEEEeCCC---c-cCcHHHHHHHHHHHHHhCCCEEEeee---CCHHHhhCcccccccccccCCcCCCcHHHHHHHhCC
Confidence 6788887663 3 354 378889999997644 222 233443221 111 11 1 11110 12
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc-c
Q 020636 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS-L 212 (323)
Q Consensus 134 d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 212 (323)
+.+....+.+.+++.|...+.- |. ..+.-|+-..+.+| .-.+. ..+ .
T Consensus 74 ~~e~~~~L~~~~~~~Gi~~~st----pf-d~~svd~l~~~~v~----~~KIa-----------------------S~~~~ 121 (329)
T TIGR03569 74 SEEDHRELKEYCESKGIEFLST----PF-DLESADFLEDLGVP----RFKIP-----------------------SGEIT 121 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEE----eC-CHHHHHHHHhcCCC----EEEEC-----------------------ccccc
Confidence 3456667777888888765542 22 22233333333211 11100 011 2
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHH----HHHHcCCCE--EEE-c-CCCCCCCCCCcchHHHHHHHHHHhcCCCeE
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDAR----IAVQAGAAG--IIV-S-NHGARQLDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~----~~~~~Gad~--i~v-s-~~gg~~~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
++..|+.+.+ ++.||+++ |..+.++.. .+.+.|.+. |++ . ..... -......+..++.+++.. .+||
T Consensus 122 n~pLL~~~A~-~gkPvilStGmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP-~~~~~~nL~~I~~Lk~~f--~~pV 197 (329)
T TIGR03569 122 NAPLLKKIAR-FGKPVILSTGMATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYP-APFEDVNLNAMDTLKEAF--DLPV 197 (329)
T ss_pred CHHHHHHHHh-cCCcEEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCC-CCcccCCHHHHHHHHHHh--CCCE
Confidence 4677887766 58999999 556777744 334678752 433 2 11111 111123566777777776 6899
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEcccc
Q 020636 284 FLDGGVRRGTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lGAd~V~iG~~~ 312 (323)
..++--....-.+.|.++||+ +|=+.|
T Consensus 198 G~SdHt~G~~~~~aAvalGA~--iIEkH~ 224 (329)
T TIGR03569 198 GYSDHTLGIEAPIAAVALGAT--VIEKHF 224 (329)
T ss_pred EECCCCccHHHHHHHHHcCCC--EEEeCC
Confidence 987643333445677889999 555444
No 466
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=92.25 E-value=5 Score=35.35 Aligned_cols=76 Identities=26% Similarity=0.196 Sum_probs=48.8
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCCC-cchHHHHHHHHHHhcCCCe--EEEecCCCCHHHHHHHH----HcCCCEEEEc
Q 020636 237 EDARIAVQAGAAGIIVSNHGARQLDYV-PATIMALEEVVKATQGRIP--VFLDGGVRRGTDVFKAL----ALGASGIFVS 309 (323)
Q Consensus 237 e~a~~~~~~Gad~i~vs~~gg~~~~~~-~~~~~~l~~i~~~~~~~~p--via~GGI~~~~di~kal----~lGAd~V~iG 309 (323)
.+++.+.+.|||.|.+.-.-|.-.++. ....+.+.++++.+. .+| +|..-|--+.+.+.++- .+|||.|-..
T Consensus 73 ~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~-g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTs 151 (203)
T cd00959 73 AEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACG-GAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTS 151 (203)
T ss_pred HHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcC-CCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcC
Confidence 447788899999999753322211221 224456777777664 344 46666666666666543 4799999999
Q ss_pred cccc
Q 020636 310 IMPC 313 (323)
Q Consensus 310 ~~~~ 313 (323)
+.+.
T Consensus 152 TG~~ 155 (203)
T cd00959 152 TGFG 155 (203)
T ss_pred CCCC
Confidence 8775
No 467
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=92.24 E-value=2.6 Score=39.78 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=34.8
Q ss_pred cCHHHHHHHHHhcCCCEEEec-cCCHHHHHHHHHc-CCCEEEE
Q 020636 212 LSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQA-GAAGIIV 252 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~-Gad~i~v 252 (323)
..++.++.+++.+++||+.-| +.+.+++..+++. |+|.|.+
T Consensus 268 ~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~i 310 (327)
T cd02803 268 YFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVAL 310 (327)
T ss_pred hhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeee
Confidence 456788899999999998875 5789999999998 7999876
No 468
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=92.20 E-value=0.24 Score=53.73 Aligned_cols=101 Identities=29% Similarity=0.247 Sum_probs=65.6
Q ss_pred cCHHHHHHHHHhc-----CCCEEEeccCCHH---HHHHHHHcCCCEEEEcCCCC-CC---CC---CCcchHHH-HHHHHH
Q 020636 212 LSWKDVKWLQTIT-----KLPILVKGVLTAE---DARIAVQAGAAGIIVSNHGA-RQ---LD---YVPATIMA-LEEVVK 275 (323)
Q Consensus 212 ~~~~~i~~i~~~~-----~~pv~vK~i~~~e---~a~~~~~~Gad~i~vs~~gg-~~---~~---~~~~~~~~-l~~i~~ 275 (323)
+++|+++++.--. .-.|.||.+.-.- -|--..+..||.|.||+|-| +. +. ...-+|++ |.+-.+
T Consensus 1080 YSIEDLaQLIyDLk~aNP~ArVSVKLVSEaGVGiVASGVaK~~ADhI~vSGhDGGTGAS~wt~IK~AGlPWELGlAEThQ 1159 (2142)
T KOG0399|consen 1080 YSIEDLAQLIYDLKCANPRARVSVKLVSEAGVGIVASGVAKGNADHILVSGHDGGTGASRWTGIKHAGLPWELGLAETHQ 1159 (2142)
T ss_pred ccHHHHHHHHHHhhccCCCceeEEEEEecccceeeeeccccccCceEEEeccCCCcCcccccccccCCCChhhcchhhhh
Confidence 4678777764322 2458888653211 13345577899999999943 31 11 11223432 334333
Q ss_pred H-----hcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccc
Q 020636 276 A-----TQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 276 ~-----~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~ 312 (323)
. +++++-+-.||+++||.|++-|-.+||+-..+++..
T Consensus 1160 tLv~NdLR~rvVlqtDGqlrtG~DV~iAallGAeefgf~T~p 1201 (2142)
T KOG0399|consen 1160 TLVLNDLRGRVVLQTDGQLRTGRDVAIAALLGAEEFGFSTAP 1201 (2142)
T ss_pred HHhhccccccEEEEecCccccchHHHHHHHhCchhhcccccH
Confidence 2 345788889999999999999999999999998754
No 469
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=92.20 E-value=2.5 Score=40.27 Aligned_cols=96 Identities=19% Similarity=0.150 Sum_probs=61.1
Q ss_pred CHHHHHHHHHhcC-CCEEEec-c-----CCHHHHHHHH-HcCCCEEEEcCCCCCC--CCCCcchH----HHHHHHHHHhc
Q 020636 213 SWKDVKWLQTITK-LPILVKG-V-----LTAEDARIAV-QAGAAGIIVSNHGARQ--LDYVPATI----MALEEVVKATQ 278 (323)
Q Consensus 213 ~~~~i~~i~~~~~-~pv~vK~-i-----~~~e~a~~~~-~~Gad~i~vs~~gg~~--~~~~~~~~----~~l~~i~~~~~ 278 (323)
.++.++.+|+..+ .|+++-. + .+.+++..+. ..++|++.+.-.-... ...+...+ +.|..+.+.+
T Consensus 99 ~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~- 177 (326)
T cd02811 99 LAESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKAL- 177 (326)
T ss_pred hhhHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhc-
Confidence 3466777887775 7876653 2 1567665555 4899999884311100 11112223 5667777766
Q ss_pred CCCeEEEe--cCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 279 GRIPVFLD--GGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 279 ~~~pvia~--GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
++||++= |--.+.+++.++...|+|++.++.
T Consensus 178 -~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG 210 (326)
T cd02811 178 -SVPVIVKEVGFGISRETAKRLADAGVKAIDVAG 210 (326)
T ss_pred -CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence 7999983 433677788777789999999854
No 470
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=92.08 E-value=0.63 Score=39.95 Aligned_cols=64 Identities=22% Similarity=0.241 Sum_probs=49.0
Q ss_pred CHHHH-HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 235 TAEDA-RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 235 ~~e~a-~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
..+.+ ..+.+.+.|.|.+- .| -....+.++.+.. .+|||+-|=|++-+|+..||..||-+|.-.
T Consensus 109 Al~~~~~~i~~~~pD~iEvL-------PG--v~Pkvi~~i~~~t--~~piIAGGLi~t~Eev~~Al~aGA~avSTs 173 (181)
T COG1954 109 ALEKGIKQIEKSEPDFIEVL-------PG--VMPKVIKEITEKT--HIPIIAGGLIETEEEVREALKAGAVAVSTS 173 (181)
T ss_pred HHHHHHHHHHHcCCCEEEEc-------Cc--ccHHHHHHHHHhc--CCCEEeccccccHHHHHHHHHhCcEEEeec
Confidence 34443 45567999999872 22 2345677777777 799999999999999999999999999754
No 471
>PRK06801 hypothetical protein; Provisional
Probab=92.07 E-value=1.2 Score=41.74 Aligned_cols=44 Identities=23% Similarity=0.363 Sum_probs=39.4
Q ss_pred CccCHHHHHHHHHhcCCCEEEecc--CCHHHHHHHHHcCCCEEEEc
Q 020636 210 RSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~~~pv~vK~i--~~~e~a~~~~~~Gad~i~vs 253 (323)
|.+.++.++.+++.+++|+++-|. .+.++.+.+.++|++.|-+.
T Consensus 188 ~~l~~e~l~~i~~~~~~PLVlHGGSgi~~e~~~~~i~~Gi~KINv~ 233 (286)
T PRK06801 188 PKLDFARLAAIHQQTGLPLVLHGGSGISDADFRRAIELGIHKINFY 233 (286)
T ss_pred CCCCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEEeh
Confidence 557889999999999999999987 78899999999999999874
No 472
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=92.07 E-value=0.86 Score=41.00 Aligned_cols=43 Identities=33% Similarity=0.357 Sum_probs=34.1
Q ss_pred cCHHHHHHHHHhcCCCEEEe---ccCCHHHHHHHHHcCCCEEEEcC
Q 020636 212 LSWKDVKWLQTITKLPILVK---GVLTAEDARIAVQAGAAGIIVSN 254 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK---~i~~~e~a~~~~~~Gad~i~vs~ 254 (323)
.+.++++.+++..+..+-+| ||.+.++|...+++||+.|-.|+
T Consensus 164 at~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aGA~riGtS~ 209 (221)
T PRK00507 164 ATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAGATRLGTSA 209 (221)
T ss_pred CCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcCcceEccCc
Confidence 35678888888876555566 67999999999999999996653
No 473
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=92.06 E-value=2.9 Score=39.93 Aligned_cols=40 Identities=25% Similarity=0.359 Sum_probs=33.3
Q ss_pred CHHHHHHHHHhcCCCEEEec-cCCHHHHHHHHHcC-CCEEEE
Q 020636 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAG-AAGIIV 252 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~G-ad~i~v 252 (323)
.++..+++|+.+++||++-+ +.++++++.+++.| +|.|-+
T Consensus 280 ~~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~l 321 (338)
T cd04733 280 FLEFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGIGL 321 (338)
T ss_pred hHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCCCeeee
Confidence 46678899999999998875 46899999999876 898866
No 474
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=92.00 E-value=8.8 Score=35.37 Aligned_cols=149 Identities=21% Similarity=0.241 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHH
Q 020636 89 GEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREAD 168 (323)
Q Consensus 89 ~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d 168 (323)
+=..+.+.|+++|++++.+-+...+++.+.+.. -++|+-.. + -....+++.+.+.|- .+++.-+ ..+ ...+
T Consensus 77 gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~~~---d~lkI~s~-~-~~n~~LL~~~a~~gk-PVilk~G--~~~-t~~e 147 (260)
T TIGR01361 77 GLKLLRRAADEHGLPVVTEVMDPRDVEIVAEYA---DILQIGAR-N-MQNFELLKEVGKQGK-PVLLKRG--MGN-TIEE 147 (260)
T ss_pred HHHHHHHHHHHhCCCEEEeeCChhhHHHHHhhC---CEEEECcc-c-ccCHHHHHHHhcCCC-cEEEeCC--CCC-CHHH
Confidence 344788888999998887767666677665542 25555321 1 111245555555553 3333322 211 1122
Q ss_pred HhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEE-ec-c-----CCHHHHHH
Q 020636 169 IKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILV-KG-V-----LTAEDARI 241 (323)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~v-K~-i-----~~~e~a~~ 241 (323)
+.+... .+.-....+... .. .+...| .+..+...++..+..+++.++.||++ -. . .....++.
T Consensus 148 ~~~Ave---~i~~~Gn~~i~l---~~---rG~s~y-~~~~~~~~dl~~i~~lk~~~~~pV~~ds~Hs~G~r~~~~~~~~a 217 (260)
T TIGR01361 148 WLYAAE---YILSSGNGNVIL---CE---RGIRTF-EKATRNTLDLSAVPVLKKETHLPIIVDPSHAAGRRDLVIPLAKA 217 (260)
T ss_pred HHHHHH---HHHHcCCCcEEE---EE---CCCCCC-CCCCcCCcCHHHHHHHHHhhCCCEEEcCCCCCCccchHHHHHHH
Confidence 221110 000000000000 00 000000 00112346788899999888999988 32 1 12566788
Q ss_pred HHHcCCCEEEEcCCC
Q 020636 242 AVQAGAAGIIVSNHG 256 (323)
Q Consensus 242 ~~~~Gad~i~vs~~g 256 (323)
+...|||++++--|-
T Consensus 218 Ava~Ga~gl~iE~H~ 232 (260)
T TIGR01361 218 AIAAGADGLMIEVHP 232 (260)
T ss_pred HHHcCCCEEEEEeCC
Confidence 999999998876554
No 475
>PLN02826 dihydroorotate dehydrogenase
Probab=91.95 E-value=1.4 Score=43.26 Aligned_cols=41 Identities=29% Similarity=0.413 Sum_probs=33.7
Q ss_pred CHHHHHHHHHhc--CCCEE-EeccCCHHHHHHHHHcCCCEEEEc
Q 020636 213 SWKDVKWLQTIT--KLPIL-VKGVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 213 ~~~~i~~i~~~~--~~pv~-vK~i~~~e~a~~~~~~Gad~i~vs 253 (323)
..+.+..+++.+ ++||+ +.||.+.+||.+.+.+||+.|-+.
T Consensus 327 sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~ 370 (409)
T PLN02826 327 STEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRAGASLVQLY 370 (409)
T ss_pred HHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCCCeeeec
Confidence 466788888877 57765 447899999999999999999873
No 476
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=91.94 E-value=1.1 Score=41.92 Aligned_cols=45 Identities=16% Similarity=0.448 Sum_probs=39.2
Q ss_pred CCccCHHHHHHHHHhcCCCEEEecc--CCHHHHHHHHHcCCCEEEEc
Q 020636 209 DRSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 209 ~~~~~~~~i~~i~~~~~~pv~vK~i--~~~e~a~~~~~~Gad~i~vs 253 (323)
.|.++++.+++|++.+++|+++.|. .+.++.+++.+.|+.-|=+.
T Consensus 186 ~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~ 232 (284)
T PRK09195 186 EPKLDFDRLENIRQWVNIPLVLHGASGLPTKDIQQTIKLGICKVNVA 232 (284)
T ss_pred CCcCCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEeC
Confidence 4678999999999999999999986 46788999999999888664
No 477
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=91.94 E-value=3.6 Score=35.44 Aligned_cols=42 Identities=36% Similarity=0.456 Sum_probs=36.8
Q ss_pred CHHHHHHHHHhcCCCEEEecc-CCHHHHHHHHHcCCCEEEEcC
Q 020636 213 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSN 254 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~i-~~~e~a~~~~~~Gad~i~vs~ 254 (323)
..+.++++.+.++.|++..|. .+.|++..++++||-++..||
T Consensus 132 ~Pkvi~~i~~~t~~piIAGGLi~t~Eev~~Al~aGA~avSTs~ 174 (181)
T COG1954 132 MPKVIKEITEKTHIPIIAGGLIETEEEVREALKAGAVAVSTSN 174 (181)
T ss_pred cHHHHHHHHHhcCCCEEeccccccHHHHHHHHHhCcEEEeecc
Confidence 356889999999999999974 899999999999998887766
No 478
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=91.90 E-value=0.71 Score=42.11 Aligned_cols=82 Identities=28% Similarity=0.362 Sum_probs=56.9
Q ss_pred CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCC----CCCCCcchHH----HHHHHHHHhcCCCeEEEecCC--CCHHH
Q 020636 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIM----ALEEVVKATQGRIPVFLDGGV--RRGTD 294 (323)
Q Consensus 225 ~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~----~~~~~~~~~~----~l~~i~~~~~~~~pvia~GGI--~~~~d 294 (323)
+.|+++=++.+.-.|+.+.++|+|++.+++++.. ..|....+++ .+..|.+.+ .+||++|+-. .+..+
T Consensus 8 ~~~i~~~~~~D~~sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~--~~Pv~~D~~~G~g~~~~ 85 (243)
T cd00377 8 GGPLVLPGAWDALSARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAV--DLPVIADADTGYGNALN 85 (243)
T ss_pred CCcEEecCCCCHHHHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhc--cCCEEEEcCCCCCCHHH
Confidence 4678888888899999999999999999876532 1344444443 334444444 7999999755 34344
Q ss_pred H----HHHHHcCCCEEEE
Q 020636 295 V----FKALALGASGIFV 308 (323)
Q Consensus 295 i----~kal~lGAd~V~i 308 (323)
+ .+.+..|+++|.|
T Consensus 86 ~~~~v~~~~~~G~~gv~i 103 (243)
T cd00377 86 VARTVRELEEAGAAGIHI 103 (243)
T ss_pred HHHHHHHHHHcCCEEEEE
Confidence 4 3445589999999
No 479
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=91.89 E-value=1.3 Score=41.28 Aligned_cols=150 Identities=17% Similarity=0.196 Sum_probs=86.4
Q ss_pred HHHHHHHHcCCceeecCCCCCCHHHHHhcCC-CceeEEeeec-----CChHHHHHHHHHHHHcCCc--EEEEecCCCCCC
Q 020636 92 ATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVY-----KDRNVVAQLVRRAERAGFK--AIALTVDTPRLG 163 (323)
Q Consensus 92 ~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~-~~~~~QLy~~-----~d~~~~~~~~~~a~~~G~~--al~itvd~p~~g 163 (323)
.+...|+++.+|.++.-==..+++.+.++.. +..++|+-.. .+.+.++++.+.+++.|+. +=..+++..-.+
T Consensus 65 ~~~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~ 144 (281)
T PRK06806 65 LMVAAAKQAKVPVAVHFDHGMTFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDG 144 (281)
T ss_pred HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCC
Confidence 4456778888998888433346676665543 5678887431 1235678888888888753 333455411111
Q ss_pred chHHHHhhccCCCCccc-c-----ccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEec--cCC
Q 020636 164 RREADIKNRFTLPPFLT-L-----KNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG--VLT 235 (323)
Q Consensus 164 ~r~~d~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~--i~~ 235 (323)
.. .+...++-|.... . .....+..|+ -.+ .....|.+.++.++++++.+++|+++-| -.+
T Consensus 145 ~~--~~g~s~t~~eea~~f~~~tg~DyLAvaiG~-----~hg-----~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~ 212 (281)
T PRK06806 145 SE--DIEMLLTSTTEAKRFAEETDVDALAVAIGN-----AHG-----MYNGDPNLRFDRLQEINDVVHIPLVLHGGSGIS 212 (281)
T ss_pred cc--cccceeCCHHHHHHHHHhhCCCEEEEccCC-----CCC-----CCCCCCccCHHHHHHHHHhcCCCEEEECCCCCC
Confidence 00 0000000000000 0 0000000011 000 0112466789999999999999999998 678
Q ss_pred HHHHHHHHHcCCCEEEEc
Q 020636 236 AEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs 253 (323)
.++...+.++|++.|-+.
T Consensus 213 ~e~~~~~i~~G~~kinv~ 230 (281)
T PRK06806 213 PEDFKKCIQHGIRKINVA 230 (281)
T ss_pred HHHHHHHHHcCCcEEEEh
Confidence 999999999999999884
No 480
>PTZ00411 transaldolase-like protein; Provisional
Probab=91.87 E-value=6.4 Score=37.68 Aligned_cols=95 Identities=14% Similarity=0.234 Sum_probs=63.4
Q ss_pred CHHHHHHHHHh--cCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCC-------------CCcchHHHHHHHHHHh
Q 020636 213 SWKDVKWLQTI--TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD-------------YVPATIMALEEVVKAT 277 (323)
Q Consensus 213 ~~~~i~~i~~~--~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~-------------~~~~~~~~l~~i~~~~ 277 (323)
+|+=++.++.. -++++-+-.+.+...|..|.++|++.|... -||-.| .+.+.+..+.++....
T Consensus 146 T~eGi~Aa~~L~~eGI~~N~TlvFS~~QA~aaaeAGa~~ISPf--VGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~ 223 (333)
T PTZ00411 146 TWEGIQAAKALEKEGIHCNLTLLFSFAQAVACAQAGVTLISPF--VGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYY 223 (333)
T ss_pred CHHHHHHHHHHHHCCCceeEeEecCHHHHHHHHHcCCCEEEee--cchHHHhcccccccccccccCCchHHHHHHHHHHH
Confidence 45544444322 278888888999999999999999988653 222111 1234556666666554
Q ss_pred c--CCCeEEEecCCCCHHHHHHHHHcCCCEEEEccc
Q 020636 278 Q--GRIPVFLDGGVRRGTDVFKALALGASGIFVSIM 311 (323)
Q Consensus 278 ~--~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~ 311 (323)
. +--..|....+|+..++.+ .+|||.+-|.-.
T Consensus 224 k~~g~~T~Im~ASfRn~~qi~~--laG~D~lTi~p~ 257 (333)
T PTZ00411 224 KKHGYKTIVMGASFRNTGEILE--LAGCDKLTISPK 257 (333)
T ss_pred HHcCCCeEEEecccCCHHHHHH--HHCCCEEeCCHH
Confidence 2 2234566677999999997 389999988743
No 481
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=91.79 E-value=1.2 Score=41.57 Aligned_cols=45 Identities=27% Similarity=0.455 Sum_probs=39.4
Q ss_pred CCccCHHHHHHHHHhcCCCEEEecc--CCHHHHHHHHHcCCCEEEEc
Q 020636 209 DRSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 209 ~~~~~~~~i~~i~~~~~~pv~vK~i--~~~e~a~~~~~~Gad~i~vs 253 (323)
.|.++++.+++|++.+++|+++.|. ...++.+++.+.|+.-|=+.
T Consensus 187 ~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~GI~KiNi~ 233 (286)
T PRK08610 187 EPKLGFKEMEEIGLSTGLPLVLHGGTGIPTKDIQKAIPFGTAKINVN 233 (286)
T ss_pred CCCCCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHCCCeEEEec
Confidence 5778999999999999999999987 46688999999999888664
No 482
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=91.72 E-value=13 Score=35.95 Aligned_cols=192 Identities=16% Similarity=0.144 Sum_probs=0.0
Q ss_pred ceEECcccccccCCcHHHHHHHHHHHHcCCcee-----ecCCCCCCHHH--------HHhcC---CCceeEEeeecCChH
Q 020636 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-----LSSWSTSSVEE--------VASTG---PGIRFFQLYVYKDRN 136 (323)
Q Consensus 73 Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~-----vs~~s~~~~ee--------i~~~~---~~~~~~QLy~~~d~~ 136 (323)
|++.+|+--..=..++.-..++....+.|+.++ ++++...+.|| +.++. .+...+-.-...+.+
T Consensus 131 Pli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~nit~~~~ 210 (367)
T cd08205 131 PLLGTIIKPSIGLSPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLYAPNITGDPD 210 (367)
T ss_pred CeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCCCHH
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHH
Q 020636 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKD 216 (323)
Q Consensus 137 ~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (323)
.+.+..+.++++|++++++.. +..-+..
T Consensus 211 e~i~~a~~a~~~Gad~vmv~~----------------------------------------------------~~~g~~~ 238 (367)
T cd08205 211 ELRRRADRAVEAGANALLINP----------------------------------------------------NLVGLDA 238 (367)
T ss_pred HHHHHHHHHHHcCCCEEEEec----------------------------------------------------ccccccH
Q ss_pred HHHHHHhcCCCEEEe-------------ccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHH--HHHHhcCCC
Q 020636 217 VKWLQTITKLPILVK-------------GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEE--VVKATQGRI 281 (323)
Q Consensus 217 i~~i~~~~~~pv~vK-------------~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~--i~~~~~~~~ 281 (323)
++.+++..++|+... +....--.+.+.-+|+|.+...|.+| .++..+.....+.+ ......-+-
T Consensus 239 ~~~l~~~~~lpi~~H~a~~ga~~~~~~~g~~~~~~~kl~RlaGad~~~~~~~~g-k~~~~~~~~~~la~~~~~~~~~iK~ 317 (367)
T cd08205 239 LRALAEDPDLPIMAHPAFAGALSRSPDYGSHFLLLGKLMRLAGADAVIFPGPGG-RFPFSREECLAIARACRRPLGGIKP 317 (367)
T ss_pred HHHHHhcCCCeEEEccCcccccccCCCCcCCHHHHHHHHHHcCCCccccCCCcc-CcCCCHHHHHHHHHHHhCccccCCC
Q ss_pred eEEEecCCCCHHHHHHHHH-cCCCEEEE-ccccccCcc
Q 020636 282 PVFLDGGVRRGTDVFKALA-LGASGIFV-SIMPCQCPL 317 (323)
Q Consensus 282 pvia~GGI~~~~di~kal~-lGAd~V~i-G~~~~~~~~ 317 (323)
..-+.+|=-++..+-..+. +|.|.+.. |..++++|+
T Consensus 318 ~~Pv~sgG~~~~~v~~l~~~~G~dv~~~~GGgi~gHp~ 355 (367)
T cd08205 318 ALPVPSGGMHPGRVPELYRDYGPDVILLAGGGILGHPD 355 (367)
T ss_pred ceeeccCCCCHHHHHHHHHHhCCcEEEEcCchhcCCCC
No 483
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=91.72 E-value=5.5 Score=38.32 Aligned_cols=65 Identities=25% Similarity=0.376 Sum_probs=47.7
Q ss_pred HHHHHHHhc-CCCEEEe---ccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhc-CCCeEEEecCC
Q 020636 216 DVKWLQTIT-KLPILVK---GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ-GRIPVFLDGGV 289 (323)
Q Consensus 216 ~i~~i~~~~-~~pv~vK---~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~-~~~pvia~GGI 289 (323)
.+.-+++.. ++|+.+- .+.+.+.++-..+.|+..++++- .-+.+-+.++.+.++ -.+.|++-|+.
T Consensus 103 ~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G~~rvVl~r---------Els~~ei~~i~~~~~~veiEvfVhGal 172 (347)
T COG0826 103 LIMLARERGPDLPIHVSTQANVTNAETAKFWKELGAKRVVLPR---------ELSLEEIKEIKEQTPDVEIEVFVHGAL 172 (347)
T ss_pred HHHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHcCCEEEEeCc---------cCCHHHHHHHHHhCCCceEEEEEecch
Confidence 466666666 5888777 35789999999999988887742 346677788887764 35678888864
No 484
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=91.67 E-value=3.3 Score=36.28 Aligned_cols=91 Identities=24% Similarity=0.112 Sum_probs=56.6
Q ss_pred CHHHHHHHHHhc-CCCEEEec-cCCHH--HHHHHHHcCCCEEEEcCCCCCCCCCCcch-HHHHHHHHHHhcCCCeEEEe-
Q 020636 213 SWKDVKWLQTIT-KLPILVKG-VLTAE--DARIAVQAGAAGIIVSNHGARQLDYVPAT-IMALEEVVKATQGRIPVFLD- 286 (323)
Q Consensus 213 ~~~~i~~i~~~~-~~pv~vK~-i~~~e--~a~~~~~~Gad~i~vs~~gg~~~~~~~~~-~~~l~~i~~~~~~~~pvia~- 286 (323)
..+.++.+++.. +..+.+-. ++++. +++.+.++|+|.|.++.-. .... .+.+..+.+ . .++++++
T Consensus 39 g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~~------~~~~~~~~i~~~~~-~--g~~~~~~~ 109 (206)
T TIGR03128 39 GIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGVA------DDATIKGAVKAAKK-H--GKEVQVDL 109 (206)
T ss_pred CHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEeccC------CHHHHHHHHHHHHH-c--CCEEEEEe
Confidence 356788888875 33343221 23443 6899999999999985321 1112 234444433 3 5788775
Q ss_pred cCCCCH-HHHHHHHHcCCCEEEEcccc
Q 020636 287 GGVRRG-TDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 287 GGI~~~-~di~kal~lGAd~V~iG~~~ 312 (323)
-+..+. +++..+..+|+|.|.+...+
T Consensus 110 ~~~~t~~~~~~~~~~~g~d~v~~~pg~ 136 (206)
T TIGR03128 110 INVKDKVKRAKELKELGADYIGVHTGL 136 (206)
T ss_pred cCCCChHHHHHHHHHcCCCEEEEcCCc
Confidence 355554 77778888999999886543
No 485
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=91.55 E-value=4.6 Score=35.49 Aligned_cols=59 Identities=17% Similarity=0.161 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCCCEE-EeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHH
Q 020636 214 WKDVKWLQTITKLPIL-VKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA 276 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~-vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~ 276 (323)
...++|+|++++-+.+ +-|..+++.+.++.++||+.|+... ..-+....-+.+..++..
T Consensus 157 m~KV~~lR~kyp~l~ievDGGv~~~ti~~~a~AGAN~iVaGs----avf~a~d~~~vi~~lr~~ 216 (224)
T KOG3111|consen 157 MPKVEWLREKYPNLDIEVDGGVGPSTIDKAAEAGANMIVAGS----AVFGAADPSDVISLLRNS 216 (224)
T ss_pred HHHHHHHHHhCCCceEEecCCcCcchHHHHHHcCCCEEEecc----eeecCCCHHHHHHHHHHH
Confidence 4579999988865444 7777889999999999999997632 222233344555555543
No 486
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=91.33 E-value=13 Score=36.46 Aligned_cols=93 Identities=14% Similarity=0.158 Sum_probs=61.2
Q ss_pred CHHHHHHHHHh--cCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCC-------------CCcchHHHHHHHHHHh
Q 020636 213 SWKDVKWLQTI--TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD-------------YVPATIMALEEVVKAT 277 (323)
Q Consensus 213 ~~~~i~~i~~~--~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~-------------~~~~~~~~l~~i~~~~ 277 (323)
+|+=++.++.. -++++-+-.+.+.+.|..|.++|++.|... -||-.| ..-|.+..+.++.+..
T Consensus 140 T~eGi~A~~~L~~~GI~~n~TlvFS~~QA~aaaeAGa~~ISPf--VgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~ 217 (391)
T PRK12309 140 TWEGIKAAEVLEKEGIHCNLTLLFGFHQAIACAEAGVTLISPF--VGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYY 217 (391)
T ss_pred CHHHHHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEee--cchhhhhhhhccCCCccccccchHHHHHHHHHHHH
Confidence 45444444332 278888888999999999999999888653 232111 1123455666666555
Q ss_pred c---CCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 278 Q---GRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 278 ~---~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
. -+..|++ ..+|+..++.+ .+|||.+-|.-
T Consensus 218 ~~~~~~T~Im~-ASfRn~~~v~~--laG~d~~Ti~p 250 (391)
T PRK12309 218 KKFGYKTEVMG-ASFRNIGEIIE--LAGCDLLTISP 250 (391)
T ss_pred HhcCCCcEEEe-cccCCHHHHHH--HHCCCeeeCCH
Confidence 2 1344444 56999999997 47999998764
No 487
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=91.32 E-value=1.3 Score=42.67 Aligned_cols=43 Identities=30% Similarity=0.407 Sum_probs=36.3
Q ss_pred chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 265 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 265 ~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
.+++.+.++++.. ++||++- ||.+.+|+.++...|+|++.+..
T Consensus 200 ~~~~~i~~l~~~~--~~PvivK-gv~~~~dA~~a~~~G~d~I~vsn 242 (344)
T cd02922 200 LTWDDIKWLRKHT--KLPIVLK-GVQTVEDAVLAAEYGVDGIVLSN 242 (344)
T ss_pred CCHHHHHHHHHhc--CCcEEEE-cCCCHHHHHHHHHcCCCEEEEEC
Confidence 4567788888776 7899987 78999999999999999999854
No 488
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=91.22 E-value=0.32 Score=43.99 Aligned_cols=39 Identities=31% Similarity=0.571 Sum_probs=30.2
Q ss_pred HHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcC
Q 020636 216 DVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSN 254 (323)
Q Consensus 216 ~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~ 254 (323)
.++..++..+.|+++. ||.+.|.|+.+.++|||.|++.|
T Consensus 173 v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn 212 (230)
T PF01884_consen 173 VIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGN 212 (230)
T ss_dssp HHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESC
T ss_pred HHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECC
Confidence 3444444458999999 57999999999999999999966
No 489
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=91.18 E-value=11 Score=35.00 Aligned_cols=47 Identities=21% Similarity=0.144 Sum_probs=34.6
Q ss_pred CccCHHHHHHHHHhcCCCEEEecc----CCHHHHHHHHHcCCCEEEEcCCC
Q 020636 210 RSLSWKDVKWLQTITKLPILVKGV----LTAEDARIAVQAGAAGIIVSNHG 256 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~~~pv~vK~i----~~~e~a~~~~~~Gad~i~vs~~g 256 (323)
|....+.++.+++.++.|+-+..= +....+..+.++||+.|.++-.|
T Consensus 177 P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd~sv~G 227 (275)
T cd07937 177 PYAAYELVKALKKEVGLPIHLHTHDTSGLAVATYLAAAEAGVDIVDTAISP 227 (275)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHhCCCEEEEeccc
Confidence 334556788999988877777632 44566788899999999976543
No 490
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=91.16 E-value=1.3 Score=41.43 Aligned_cols=44 Identities=16% Similarity=0.273 Sum_probs=39.3
Q ss_pred CccCHHHHHHHHHhcCCCEEEecc--CCHHHHHHHHHcCCCEEEEc
Q 020636 210 RSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~~~pv~vK~i--~~~e~a~~~~~~Gad~i~vs 253 (323)
|.++++.+++|++.+++|+++.|. .+.++.+++.+.|+..|-+.
T Consensus 184 p~l~~~~l~~I~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~ 229 (283)
T PRK07998 184 PRIDIPLLKRIAEVSPVPLVIHGGSGIPPEILRSFVNYKVAKVNIA 229 (283)
T ss_pred CCcCHHHHHHHHhhCCCCEEEeCCCCCCHHHHHHHHHcCCcEEEEC
Confidence 778899999999999999999987 46788999999999999774
No 491
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=91.12 E-value=1.6 Score=37.88 Aligned_cols=80 Identities=16% Similarity=0.113 Sum_probs=53.6
Q ss_pred HHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHH
Q 020636 216 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 295 (323)
Q Consensus 216 ~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di 295 (323)
.+..+.+.++.|+++.. +.+.+.+.|+|+|.+.... ... ..+++..+ ...+....++|..++
T Consensus 48 ~l~~~~~~~~~~l~i~~-----~~~la~~~g~~GvHl~~~~--------~~~---~~~r~~~~--~~~~ig~s~h~~~e~ 109 (196)
T TIGR00693 48 KLQELCRRYGVPFIVND-----RVDLALALGADGVHLGQDD--------LPA---SEARALLG--PDKIIGVSTHNLEEL 109 (196)
T ss_pred HHHHHHHHhCCeEEEEC-----HHHHHHHcCCCEEecCccc--------CCH---HHHHHhcC--CCCEEEEeCCCHHHH
Confidence 45555556678888753 5677889999999774210 111 22222231 224555679999999
Q ss_pred HHHHHcCCCEEEEccccc
Q 020636 296 FKALALGASGIFVSIMPC 313 (323)
Q Consensus 296 ~kal~lGAd~V~iG~~~~ 313 (323)
.++..+|+|.+.+|..|-
T Consensus 110 ~~a~~~g~dyi~~~~v~~ 127 (196)
T TIGR00693 110 AEAEAEGADYIGFGPIFP 127 (196)
T ss_pred HHHhHcCCCEEEECCccC
Confidence 999999999999987653
No 492
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=91.07 E-value=1.3 Score=40.73 Aligned_cols=76 Identities=25% Similarity=0.265 Sum_probs=53.2
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+-|+...++||++|.|-.- ...-..+++.|..+++.+ ++||..-==|-++.++.++.++|||+|.+=-.++..
T Consensus 71 ~~~a~~y~~~GA~aiSVlTe----~~~F~Gs~~dL~~v~~~~--~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~L~~ 144 (254)
T PF00218_consen 71 AEIAKAYEEAGAAAISVLTE----PKFFGGSLEDLRAVRKAV--DLPVLRKDFIIDPYQIYEARAAGADAVLLIAAILSD 144 (254)
T ss_dssp HHHHHHHHHTT-SEEEEE------SCCCHHHHHHHHHHHHHS--SS-EEEES---SHHHHHHHHHTT-SEEEEEGGGSGH
T ss_pred HHHHHHHHhcCCCEEEEECC----CCCCCCCHHHHHHHHHHh--CCCcccccCCCCHHHHHHHHHcCCCEeehhHHhCCH
Confidence 35578888999999988431 112235788899998888 899999888999999999999999999886555554
Q ss_pred cc
Q 020636 316 PL 317 (323)
Q Consensus 316 ~~ 317 (323)
..
T Consensus 145 ~~ 146 (254)
T PF00218_consen 145 DQ 146 (254)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 493
>TIGR03586 PseI pseudaminic acid synthase.
Probab=90.94 E-value=6.5 Score=37.53 Aligned_cols=86 Identities=10% Similarity=0.166 Sum_probs=61.8
Q ss_pred cCHHH---HHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecC
Q 020636 212 LSWKD---VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (323)
Q Consensus 212 ~~~~~---i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GG 288 (323)
+.++. +...++..++++ +-.+.+.+.+..+.+.|++.+.+... ....+.+|..+.+. ..|||.+-|
T Consensus 74 l~~e~~~~L~~~~~~~Gi~~-~stpfd~~svd~l~~~~v~~~KI~S~-------~~~n~~LL~~va~~---gkPvilstG 142 (327)
T TIGR03586 74 TPWEWHKELFERAKELGLTI-FSSPFDETAVDFLESLDVPAYKIASF-------EITDLPLIRYVAKT---GKPIIMSTG 142 (327)
T ss_pred CCHHHHHHHHHHHHHhCCcE-EEccCCHHHHHHHHHcCCCEEEECCc-------cccCHHHHHHHHhc---CCcEEEECC
Confidence 44444 444466667765 34567888999999999999988431 13456777777653 689999999
Q ss_pred CCCHHHHHHHHH----cCCCEEEE
Q 020636 289 VRRGTDVFKALA----LGASGIFV 308 (323)
Q Consensus 289 I~~~~di~kal~----lGAd~V~i 308 (323)
..+.+++..|+. .|..-|.+
T Consensus 143 ~~t~~Ei~~Av~~i~~~g~~~i~L 166 (327)
T TIGR03586 143 IATLEEIQEAVEACREAGCKDLVL 166 (327)
T ss_pred CCCHHHHHHHHHHHHHCCCCcEEE
Confidence 999999988875 47755555
No 494
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=90.91 E-value=3.4 Score=33.99 Aligned_cols=84 Identities=24% Similarity=0.220 Sum_probs=52.9
Q ss_pred HHHHHHHhcCCCEEEecc-CCHHH-HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHh----cCCCeEEEecCC
Q 020636 216 DVKWLQTITKLPILVKGV-LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT----QGRIPVFLDGGV 289 (323)
Q Consensus 216 ~i~~i~~~~~~pv~vK~i-~~~e~-a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~----~~~~pvia~GGI 289 (323)
.+..+-+..+.-|+--+. .++++ ++.+.+.++|.|.+|..-+ .+.+.++++.+.+ ..+++|++ ||.
T Consensus 21 iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~-------~~~~~~~~~~~~L~~~g~~~i~viv-GG~ 92 (132)
T TIGR00640 21 VIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAG-------GHLTLVPALRKELDKLGRPDILVVV-GGV 92 (132)
T ss_pred HHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchh-------hhHHHHHHHHHHHHhcCCCCCEEEE-eCC
Confidence 344444445665655555 45555 6888899999999986432 2233334433333 12466666 776
Q ss_pred CCHHHHHHHHHcCCCEEE
Q 020636 290 RRGTDVFKALALGASGIF 307 (323)
Q Consensus 290 ~~~~di~kal~lGAd~V~ 307 (323)
--.+|..+..++|.|.+.
T Consensus 93 ~~~~~~~~l~~~Gvd~~~ 110 (132)
T TIGR00640 93 IPPQDFDELKEMGVAEIF 110 (132)
T ss_pred CChHhHHHHHHCCCCEEE
Confidence 677888888899988764
No 495
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=90.75 E-value=3 Score=40.24 Aligned_cols=96 Identities=13% Similarity=0.047 Sum_probs=61.4
Q ss_pred CHHHHHHHHHhc-CCCEEEecc------CCHHHHH-HHHHcCCCEEEEcCCCCCC--CCCCcchH----HHHHHHHHHhc
Q 020636 213 SWKDVKWLQTIT-KLPILVKGV------LTAEDAR-IAVQAGAAGIIVSNHGARQ--LDYVPATI----MALEEVVKATQ 278 (323)
Q Consensus 213 ~~~~i~~i~~~~-~~pv~vK~i------~~~e~a~-~~~~~Gad~i~vs~~gg~~--~~~~~~~~----~~l~~i~~~~~ 278 (323)
..+.++.+|+.. +.|+++-.- .+.+++. .+...++|++.+.-.-... ...+...+ +.+.++++.+
T Consensus 107 ~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~- 185 (352)
T PRK05437 107 LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSAL- 185 (352)
T ss_pred hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhh-
Confidence 345677788877 688877421 2355544 4446899999885321111 11122233 5666777766
Q ss_pred CCCeEEE--ecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 279 GRIPVFL--DGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 279 ~~~pvia--~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
++||++ .|.-.+.+++.++...|+|++.++.
T Consensus 186 -~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg 218 (352)
T PRK05437 186 -PVPVIVKEVGFGISKETAKRLADAGVKAIDVAG 218 (352)
T ss_pred -CCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECC
Confidence 789997 5555678888888889999999955
No 496
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=90.74 E-value=14 Score=34.34 Aligned_cols=187 Identities=18% Similarity=0.087 Sum_probs=101.7
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHc-CCcee--ec---CCCCCCHHHHHh-------cCC--CceeEEeeecCChH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAA-GTIMT--LS---SWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRN 136 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~-G~~~~--vs---~~s~~~~eei~~-------~~~--~~~~~QLy~~~d~~ 136 (323)
.|..+.|+.-.+-.+.++-..+.+-..+. |+..+ .+ ++.+.+.||-.+ ... -+.+++.- ..+-+
T Consensus 5 ~~a~~TPf~~dg~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~-~~~~~ 83 (288)
T cd00954 5 IAALLTPFDENGEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVG-SLNLK 83 (288)
T ss_pred eeceECCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccC-CCCHH
Confidence 46677776544334444545677777777 76443 22 233455555322 222 24455553 23556
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHH
Q 020636 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKD 216 (323)
Q Consensus 137 ~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (323)
...++.+.++++|++++.+.- |... + + +.+-..+.
T Consensus 84 ~ai~~a~~a~~~Gad~v~~~~--P~y~------------~--------------~-----------------~~~~i~~~ 118 (288)
T cd00954 84 ESQELAKHAEELGYDAISAIT--PFYY------------K--------------F-----------------SFEEIKDY 118 (288)
T ss_pred HHHHHHHHHHHcCCCEEEEeC--CCCC------------C--------------C-----------------CHHHHHHH
Confidence 667788889999999998652 3310 0 0 00011334
Q ss_pred HHHHHHhc-CCCEEEecc-------CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecC
Q 020636 217 VKWLQTIT-KLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (323)
Q Consensus 217 i~~i~~~~-~~pv~vK~i-------~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GG 288 (323)
.+.+.+.+ ++||++=.+ .+++..+++.+.. ..+-+=. .. .++..+.++.+..+++..|+. |.
T Consensus 119 ~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~~~p-nivgiK~-------s~-~d~~~~~~~~~~~~~~~~v~~-G~ 188 (288)
T cd00954 119 YREIIAAAASLPMIIYHIPALTGVNLTLEQFLELFEIP-NVIGVKF-------TA-TDLYDLERIRAASPEDKLVLN-GF 188 (288)
T ss_pred HHHHHHhcCCCCEEEEeCccccCCCCCHHHHHHHhcCC-CEEEEEe-------CC-CCHHHHHHHHHhCCCCcEEEE-ec
Confidence 55666777 788887632 5677777777532 2222211 11 123444555555543454443 32
Q ss_pred CCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 289 VRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 289 I~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
..-+...+.+|+++.+-|..-+....
T Consensus 189 ---d~~~~~~~~~G~~G~i~~~~n~~P~~ 214 (288)
T cd00954 189 ---DEMLLSALALGADGAIGSTYNVNGKR 214 (288)
T ss_pred ---hHHHHHHHHcCCCEEEeChhhhCHHH
Confidence 23466788899999987764433333
No 497
>PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants. In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: L-glutamine + H2O = L-glutamate + NH3 Reactions of FMN-binding domain: 2-oxoglutarate + NH3 = 2-iminoglutarate + H2O 2e + FMNox = FMNred 2-iminoglutarate + FMNred = L-glutamate + FMNox The central domain of glutamate synthase connects the N-terminal amidotransferase domain with the FMN-binding domain and has an alpha/beta overall topology [].; GO: 0015930 glutamate synthase activity, 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=90.72 E-value=1.2 Score=41.57 Aligned_cols=71 Identities=24% Similarity=0.327 Sum_probs=44.5
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHh-----cCCCeEEE-ecCCCCHHHHHHHHHcCCCEEE
Q 020636 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFL-DGGVRRGTDVFKALALGASGIF 307 (323)
Q Consensus 237 e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~-----~~~~pvia-~GGI~~~~di~kal~lGAd~V~ 307 (323)
++|..+.+.|+..|++|-++...-.-..|++-++..+..++ +.++.+|+ +|-+|+.-|+...+..|||+|.
T Consensus 146 ~ea~~Av~~G~~ilILsDr~~~~~~~~IP~lLAv~avh~~Li~~glR~~~slIvesge~re~Hh~a~LlGyGA~AV~ 222 (287)
T PF04898_consen 146 EEAEAAVREGANILILSDRNASPDRAPIPSLLAVSAVHHHLIREGLRTRVSLIVESGEAREVHHFATLLGYGADAVN 222 (287)
T ss_dssp HHHHHHHHCT-SEEEEESTC-CTTEEE--HHHHHHHHHHHHHCTT-CCC-EEEEEESS--SHHHHHHHHCTT-SEEE
T ss_pred HHHHHHHHcCCcEEEECCCCCCcCcccccHHHHHHHHHHHHHHcCCcceeeEEEecCCcccHHHHHHHHcCCHhhhc
Confidence 45788899999999998765322112234444455555443 23566666 7789999999999999999984
No 498
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=90.71 E-value=13 Score=36.43 Aligned_cols=158 Identities=14% Similarity=0.115 Sum_probs=82.4
Q ss_pred ccceEECcccccccCCcHHHHHHHHHHHHcCCcee---ecCCCC-----------CC---HHHH----HhcCCCceeEEe
Q 020636 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT---LSSWST-----------SS---VEEV----ASTGPGIRFFQL 129 (323)
Q Consensus 71 ~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~---vs~~s~-----------~~---~eei----~~~~~~~~~~QL 129 (323)
..|++.|=|+.. .++.=..+++.+.+.|+.++ +|.-.. .. +.+| .+....|.|+.|
T Consensus 113 ~~pvIaSi~~~~---s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKL 189 (385)
T PLN02495 113 DRILIASIMEEY---NKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATVPVWAKM 189 (385)
T ss_pred CCcEEEEccCCC---CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhcCceEEEe
Confidence 358888855432 33333478888888886444 321110 11 2333 222335789998
Q ss_pred eecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccc--cchhhHHHHhhc
Q 020636 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA--NDSGLAAYVAGQ 207 (323)
Q Consensus 130 y~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 207 (323)
-+ +...+.++++.+++.|+++++++ ++-..+. .-|+...-..| . .. +....+ .+..+. .
T Consensus 190 sP--n~t~i~~ia~aa~~~Gadgi~li-NT~~~~~-~ID~~t~~p~~---~------~~-~~~~~GGlSG~alk-p---- 250 (385)
T PLN02495 190 TP--NITDITQPARVALKSGCEGVAAI-NTIMSVM-GINLDTLRPEP---C------VE-GYSTPGGYSSKAVR-P---- 250 (385)
T ss_pred CC--ChhhHHHHHHHHHHhCCCEEEEe-cccCccc-ccccccCcccc---c------cC-CCCCCCCccchhhh-H----
Confidence 64 44447788888999999999864 3221100 00111100000 0 00 000000 011110 0
Q ss_pred cCCccCHHHHHHHHHhc------CCCEE-EeccCCHHHHHHHHHcCCCEEEEcC
Q 020636 208 IDRSLSWKDVKWLQTIT------KLPIL-VKGVLTAEDARIAVQAGAAGIIVSN 254 (323)
Q Consensus 208 ~~~~~~~~~i~~i~~~~------~~pv~-vK~i~~~e~a~~~~~~Gad~i~vs~ 254 (323)
.....+.++++.. ++||+ +.||.+.+||...+.+||+.|-|..
T Consensus 251 ----iAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~T 300 (385)
T PLN02495 251 ----IALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQVCT 300 (385)
T ss_pred ----HHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhCCCceeEee
Confidence 1223344444443 36654 5578999999999999999998743
No 499
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=90.66 E-value=1.9 Score=40.19 Aligned_cols=155 Identities=17% Similarity=0.169 Sum_probs=86.0
Q ss_pred HHHHHHHHcC-CceeecCCCCCCHHHHHhcCC-CceeEEeeecC-----ChHHHHHHHHHHHHcCCcEEEEecCCCCCCc
Q 020636 92 ATARAASAAG-TIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYK-----DRNVVAQLVRRAERAGFKAIALTVDTPRLGR 164 (323)
Q Consensus 92 ~~a~aa~~~G-~~~~vs~~s~~~~eei~~~~~-~~~~~QLy~~~-----d~~~~~~~~~~a~~~G~~al~itvd~p~~g~ 164 (323)
.+...|.++. +|.++.---..+++.+.++.. +..++|+-... +.+.+.++++.+++.|+. +-.-+++ +.|.
T Consensus 64 ~~~~~a~~~~~vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~-Ve~ElG~-~gg~ 141 (282)
T TIGR01859 64 MVKTLIERMSIVPVALHLDHGSSYESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVS-VEAELGT-LGGI 141 (282)
T ss_pred HHHHHHHHCCCCeEEEECCCCCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCE-EEEeeCC-CcCc
Confidence 4455677888 898888532345666665543 44577774321 245678888888888873 4444444 2231
Q ss_pred hHHHHhhc----cCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEec--cCCHHH
Q 020636 165 READIKNR----FTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG--VLTAED 238 (323)
Q Consensus 165 r~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~--i~~~e~ 238 (323)
- |...+ ++-|... ..+.. ..+...-+-.-|-. +......|.+.++.++++++.+++|++.-| -.+.++
T Consensus 142 e--d~~~g~~~~~t~~eea--~~f~~-~tgvD~Lavs~Gt~-hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~~e~ 215 (282)
T TIGR01859 142 E--DGVDEKEAELADPDEA--EQFVK-ETGVDYLAAAIGTS-HGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIPEEQ 215 (282)
T ss_pred c--ccccccccccCCHHHH--HHHHH-HHCcCEEeeccCcc-ccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCCHHH
Confidence 1 10000 0000000 00000 00000000000000 000112466889999999999999999998 578899
Q ss_pred HHHHHHcCCCEEEEcC
Q 020636 239 ARIAVQAGAAGIIVSN 254 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~ 254 (323)
.+.+.++|++.|-+..
T Consensus 216 i~~~i~~Gi~kiNv~T 231 (282)
T TIGR01859 216 IKKAIKLGIAKINIDT 231 (282)
T ss_pred HHHHHHcCCCEEEECc
Confidence 9999999999998854
No 500
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=90.64 E-value=0.43 Score=41.99 Aligned_cols=49 Identities=29% Similarity=0.419 Sum_probs=41.7
Q ss_pred cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 264 PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 264 ~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
.++.+++..+.... .-||+..|||+-.+|+.-++.+|+++|.+||++..
T Consensus 167 G~~~E~l~~~~~~s--~~pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh~ 215 (229)
T COG1411 167 GPDYELLTKVLELS--EHPVLLGGGVGGMEDLELLLGMGVSGVLVATALHE 215 (229)
T ss_pred CCCHHHHHHHHHhc--cCceeecCCcCcHHHHHHHhcCCCceeeehhhhhc
Confidence 35677777776654 67999999999999999999999999999998754
Done!