Query 020637
Match_columns 323
No_of_seqs 277 out of 1959
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 03:58:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020637.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020637hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3448 CBS-domain-containing 99.9 8.8E-28 1.9E-32 218.1 11.8 161 120-312 205-370 (382)
2 cd02859 AMPKbeta_GBD_like AMP- 99.9 1.3E-25 2.8E-30 170.9 9.4 79 20-101 1-79 (79)
3 cd02861 E_set_proteins_like E 99.8 2.3E-19 5E-24 137.3 9.3 77 21-100 2-81 (82)
4 COG2524 Predicted transcriptio 99.8 1E-18 2.3E-23 156.5 11.4 118 155-312 172-289 (294)
5 cd04618 CBS_pair_5 The CBS dom 99.7 1.9E-17 4E-22 130.4 12.3 97 166-312 2-98 (98)
6 KOG1616 Protein involved in Sn 99.7 6.3E-17 1.4E-21 151.2 8.9 90 17-106 76-165 (289)
7 KOG1764 5'-AMP-activated prote 99.7 1.7E-16 3.8E-21 153.7 11.1 155 144-312 55-210 (381)
8 cd04641 CBS_pair_28 The CBS do 99.7 2E-15 4.2E-20 122.0 14.2 119 166-312 2-120 (120)
9 cd04642 CBS_pair_29 The CBS do 99.6 5.9E-15 1.3E-19 120.3 12.1 125 166-312 2-126 (126)
10 cd04603 CBS_pair_KefB_assoc Th 99.6 6.2E-15 1.3E-19 117.7 11.8 110 166-312 2-111 (111)
11 cd04617 CBS_pair_4 The CBS dom 99.6 3E-14 6.4E-19 114.8 14.1 112 166-311 2-117 (118)
12 PRK10892 D-arabinose 5-phospha 99.6 1E-14 2.2E-19 138.8 13.2 124 153-312 200-323 (326)
13 cd04619 CBS_pair_6 The CBS dom 99.6 3E-14 6.5E-19 114.1 13.8 112 166-311 2-113 (114)
14 cd04630 CBS_pair_17 The CBS do 99.6 4.3E-14 9.4E-19 112.9 14.1 113 166-312 2-114 (114)
15 cd04627 CBS_pair_14 The CBS do 99.6 8.2E-14 1.8E-18 112.9 13.6 119 166-309 2-120 (123)
16 cd04614 CBS_pair_1 The CBS dom 99.6 4.8E-14 1E-18 110.2 11.7 95 166-312 2-96 (96)
17 cd04600 CBS_pair_HPP_assoc Thi 99.5 9.8E-14 2.1E-18 112.1 12.1 124 164-312 1-124 (124)
18 COG2905 Predicted signal-trans 99.5 2E-14 4.2E-19 141.4 9.3 120 155-312 149-268 (610)
19 cd04623 CBS_pair_10 The CBS do 99.5 4.1E-13 8.8E-18 106.2 13.8 112 166-312 2-113 (113)
20 cd04593 CBS_pair_EriC_assoc_ba 99.5 4.5E-13 9.7E-18 107.0 13.5 114 166-312 2-115 (115)
21 PRK11543 gutQ D-arabinose 5-ph 99.5 1.5E-13 3.2E-18 130.5 12.5 123 154-312 196-318 (321)
22 cd04607 CBS_pair_NTP_transfera 99.5 4E-13 8.6E-18 107.0 13.1 110 166-311 3-112 (113)
23 cd04608 CBS_pair_PALP_assoc Th 99.5 1.1E-13 2.3E-18 113.3 10.0 112 166-312 3-123 (124)
24 COG3620 Predicted transcriptio 99.5 1.3E-13 2.8E-18 115.7 10.5 120 153-312 63-182 (187)
25 cd04586 CBS_pair_BON_assoc Thi 99.5 2.3E-13 4.9E-18 112.3 11.8 132 164-312 1-135 (135)
26 cd04632 CBS_pair_19 The CBS do 99.5 4.8E-13 1E-17 109.1 13.4 126 166-312 2-128 (128)
27 cd04621 CBS_pair_8 The CBS dom 99.5 4.2E-13 9.2E-18 111.5 12.9 131 166-312 2-135 (135)
28 cd04589 CBS_pair_CAP-ED_DUF294 99.5 9.3E-13 2E-17 104.4 13.9 110 166-312 2-111 (111)
29 cd04643 CBS_pair_30 The CBS do 99.5 4.3E-13 9.3E-18 106.9 11.9 115 166-312 2-116 (116)
30 cd04605 CBS_pair_MET2_assoc Th 99.5 1.2E-12 2.6E-17 103.5 13.6 108 165-311 2-109 (110)
31 cd04801 CBS_pair_M50_like This 99.5 1E-12 2.2E-17 104.8 12.9 109 166-311 2-113 (114)
32 cd04629 CBS_pair_16 The CBS do 99.5 7.1E-13 1.5E-17 105.3 11.9 114 165-312 1-114 (114)
33 cd04582 CBS_pair_ABC_OpuCA_ass 99.5 6.7E-13 1.5E-17 104.2 11.6 105 166-312 2-106 (106)
34 cd04590 CBS_pair_CorC_HlyC_ass 99.5 1.3E-12 2.8E-17 103.4 13.3 109 166-311 2-110 (111)
35 cd04639 CBS_pair_26 The CBS do 99.5 1.1E-12 2.3E-17 103.9 12.8 110 166-312 2-111 (111)
36 COG0517 FOG: CBS domain [Gener 99.5 2E-12 4.2E-17 103.1 14.0 110 165-310 7-117 (117)
37 cd04636 CBS_pair_23 The CBS do 99.5 8.4E-13 1.8E-17 108.4 12.0 129 166-312 2-132 (132)
38 cd04587 CBS_pair_CAP-ED_DUF294 99.5 2.1E-12 4.5E-17 102.4 13.8 112 166-312 2-113 (113)
39 cd04803 CBS_pair_15 The CBS do 99.5 1.3E-12 2.9E-17 105.1 12.9 121 166-312 2-122 (122)
40 cd04626 CBS_pair_13 The CBS do 99.5 1.6E-12 3.4E-17 103.1 12.9 109 166-311 2-110 (111)
41 cd04625 CBS_pair_12 The CBS do 99.5 2.3E-12 4.9E-17 102.2 13.8 111 166-312 2-112 (112)
42 cd04637 CBS_pair_24 The CBS do 99.5 2.9E-12 6.3E-17 103.2 14.6 121 166-312 2-122 (122)
43 cd04631 CBS_pair_18 The CBS do 99.5 1.7E-12 3.8E-17 104.9 13.2 124 166-312 2-125 (125)
44 cd04613 CBS_pair_SpoIVFB_EriC_ 99.4 1.5E-12 3.3E-17 103.1 12.6 114 165-312 1-114 (114)
45 cd04620 CBS_pair_7 The CBS dom 99.4 2.1E-12 4.6E-17 103.0 13.1 111 166-312 2-115 (115)
46 PRK07807 inosine 5-monophospha 99.4 6.3E-13 1.4E-17 132.5 12.3 118 152-312 86-203 (479)
47 cd04633 CBS_pair_20 The CBS do 99.4 1.7E-12 3.7E-17 104.3 12.7 120 166-312 2-121 (121)
48 cd04595 CBS_pair_DHH_polyA_Pol 99.4 3.4E-12 7.4E-17 101.0 13.8 108 165-311 2-109 (110)
49 PRK01862 putative voltage-gate 99.4 7.2E-13 1.6E-17 135.5 12.4 130 148-312 440-569 (574)
50 cd04800 CBS_pair_CAP-ED_DUF294 99.4 3.6E-12 7.7E-17 100.9 13.7 110 165-311 1-110 (111)
51 cd04596 CBS_pair_DRTGG_assoc T 99.4 1.4E-12 3.1E-17 103.0 11.4 106 166-312 3-108 (108)
52 cd04588 CBS_pair_CAP-ED_DUF294 99.4 4.1E-12 9E-17 100.3 14.0 108 166-311 2-109 (110)
53 cd04802 CBS_pair_3 The CBS dom 99.4 4.8E-12 1E-16 100.3 14.4 111 165-311 1-111 (112)
54 cd04591 CBS_pair_EriC_assoc_eu 99.4 2.9E-12 6.4E-17 101.6 12.9 101 166-312 3-105 (105)
55 cd04615 CBS_pair_2 The CBS dom 99.4 3.9E-12 8.4E-17 101.0 13.4 111 166-311 2-112 (113)
56 cd04640 CBS_pair_27 The CBS do 99.4 1.8E-12 3.9E-17 105.7 11.7 116 166-311 2-125 (126)
57 PRK07107 inosine 5-monophospha 99.4 2E-12 4.3E-17 129.6 14.2 132 136-313 84-219 (502)
58 TIGR01302 IMP_dehydrog inosine 99.4 6.9E-12 1.5E-16 124.6 17.5 115 157-312 82-199 (450)
59 cd04583 CBS_pair_ABC_OpuCA_ass 99.4 4.5E-12 9.8E-17 99.7 13.0 106 166-311 3-108 (109)
60 PRK15094 magnesium/cobalt effl 99.4 1.7E-12 3.8E-17 122.0 12.5 124 152-312 64-187 (292)
61 cd04635 CBS_pair_22 The CBS do 99.4 3.2E-12 7E-17 102.9 12.4 121 166-312 2-122 (122)
62 cd04622 CBS_pair_9 The CBS dom 99.4 6.6E-12 1.4E-16 99.5 13.9 113 165-312 1-113 (113)
63 cd04624 CBS_pair_11 The CBS do 99.4 5.5E-12 1.2E-16 99.9 13.4 110 166-311 2-111 (112)
64 cd04585 CBS_pair_ACT_assoc2 Th 99.4 4.9E-12 1.1E-16 101.2 12.7 121 166-312 2-122 (122)
65 cd04612 CBS_pair_SpoIVFB_EriC_ 99.4 6.3E-12 1.4E-16 99.2 13.1 110 166-312 2-111 (111)
66 cd04594 CBS_pair_EriC_assoc_ar 99.4 4E-12 8.7E-17 100.0 11.4 101 168-312 4-104 (104)
67 cd04604 CBS_pair_KpsF_GutQ_ass 99.4 5.4E-12 1.2E-16 100.0 12.2 112 166-312 3-114 (114)
68 cd04611 CBS_pair_PAS_GGDEF_DUF 99.4 8.3E-12 1.8E-16 98.5 13.0 109 166-311 2-110 (111)
69 PLN02274 inosine-5'-monophosph 99.4 7.1E-12 1.5E-16 125.8 14.5 115 164-317 107-225 (505)
70 cd04599 CBS_pair_GGDEF_assoc2 99.4 8.7E-12 1.9E-16 97.5 11.8 103 166-311 2-104 (105)
71 cd04609 CBS_pair_PALP_assoc2 T 99.4 1.2E-11 2.7E-16 97.2 12.7 109 166-312 2-110 (110)
72 cd04610 CBS_pair_ParBc_assoc T 99.4 1.1E-11 2.4E-16 97.2 12.0 106 165-312 2-107 (107)
73 TIGR03520 GldE gliding motilit 99.4 6.4E-12 1.4E-16 123.4 12.8 122 152-312 188-309 (408)
74 cd04601 CBS_pair_IMPDH This cd 99.4 8.1E-12 1.7E-16 98.4 11.0 108 165-312 2-110 (110)
75 cd04634 CBS_pair_21 The CBS do 99.4 1.3E-11 2.7E-16 103.3 12.6 133 166-311 2-142 (143)
76 cd04584 CBS_pair_ACT_assoc Thi 99.4 1.8E-11 3.8E-16 98.2 13.0 120 166-312 2-121 (121)
77 cd04602 CBS_pair_IMPDH_2 This 99.4 1.4E-11 2.9E-16 98.5 12.2 107 166-311 3-113 (114)
78 cd02205 CBS_pair The CBS domai 99.3 2.5E-11 5.4E-16 94.6 13.3 112 166-312 2-113 (113)
79 TIGR01303 IMP_DH_rel_1 IMP deh 99.3 5.4E-12 1.2E-16 125.7 11.7 115 154-312 87-201 (475)
80 cd04592 CBS_pair_EriC_assoc_eu 99.3 2.4E-11 5.2E-16 101.2 13.0 116 166-290 2-117 (133)
81 PRK05567 inosine 5'-monophosph 99.3 3.6E-11 7.9E-16 120.6 16.6 114 157-312 89-203 (486)
82 PTZ00314 inosine-5'-monophosph 99.3 3.3E-11 7.1E-16 120.9 14.4 114 164-316 103-220 (495)
83 cd04606 CBS_pair_Mg_transporte 99.3 1.6E-11 3.4E-16 97.2 9.6 102 170-312 2-108 (109)
84 TIGR00393 kpsF KpsF/GutQ famil 99.3 2.1E-11 4.5E-16 112.7 11.8 114 154-305 154-268 (268)
85 cd02858 Esterase_N_term Estera 99.3 1.7E-11 3.6E-16 94.5 9.0 75 22-99 7-83 (85)
86 TIGR00400 mgtE Mg2+ transporte 99.3 2.2E-11 4.8E-16 121.1 12.0 123 147-312 121-250 (449)
87 PRK14869 putative manganese-de 99.3 3.5E-11 7.5E-16 122.4 12.9 149 155-312 68-302 (546)
88 TIGR01137 cysta_beta cystathio 99.3 5.1E-11 1.1E-15 118.4 13.2 126 147-312 327-452 (454)
89 KOG1764 5'-AMP-activated prote 99.3 4.2E-11 9.1E-16 116.3 11.8 121 165-312 237-357 (381)
90 cd04598 CBS_pair_GGDEF_assoc T 99.2 9.6E-11 2.1E-15 93.8 11.7 113 166-311 2-118 (119)
91 cd04638 CBS_pair_25 The CBS do 99.2 1.3E-10 2.7E-15 91.4 11.8 105 166-312 2-106 (106)
92 COG4109 Predicted transcriptio 99.2 4.6E-11 9.9E-16 111.9 9.2 118 154-312 187-304 (432)
93 PRK11573 hypothetical protein; 99.0 8.7E-09 1.9E-13 101.4 13.8 126 152-312 184-309 (413)
94 PF00571 CBS: CBS domain CBS d 99.0 5E-10 1.1E-14 78.8 3.2 51 256-312 4-54 (57)
95 PF00571 CBS: CBS domain CBS d 98.9 2.2E-09 4.7E-14 75.5 6.4 55 158-215 2-56 (57)
96 COG2239 MgtE Mg/Co/Ni transpor 98.8 2.8E-08 6.1E-13 98.2 11.6 126 144-312 119-251 (451)
97 cd02688 E_set E or "early" set 98.8 2.4E-08 5.1E-13 75.1 8.0 70 21-92 4-75 (83)
98 COG3448 CBS-domain-containing 98.8 1.4E-08 3E-13 93.5 6.5 101 200-312 199-300 (382)
99 COG1253 TlyC Hemolysins and re 98.7 1.9E-07 4.1E-12 92.5 12.9 132 144-312 193-326 (429)
100 cd02854 Glycogen_branching_enz 98.5 7.5E-07 1.6E-11 70.5 8.9 67 22-90 6-86 (99)
101 KOG2550 IMP dehydrogenase/GMP 98.5 2.4E-07 5.2E-12 88.7 6.1 114 164-316 115-230 (503)
102 TIGR01186 proV glycine betaine 98.4 2E-06 4.4E-11 83.3 11.1 104 168-312 253-356 (363)
103 PRK10070 glycine betaine trans 98.4 1.7E-06 3.6E-11 84.9 10.6 103 169-312 289-391 (400)
104 COG3620 Predicted transcriptio 98.4 3.1E-07 6.7E-12 77.6 4.6 53 253-312 67-119 (187)
105 COG2524 Predicted transcriptio 98.4 3.3E-07 7.3E-12 83.0 4.0 54 252-312 173-226 (294)
106 PF02922 CBM_48: Carbohydrate- 98.3 3.5E-07 7.6E-12 69.8 3.3 57 21-79 11-73 (85)
107 KOG0474 Cl- channel CLC-7 and 98.3 1.4E-06 3E-11 87.4 8.1 153 150-312 577-745 (762)
108 cd04618 CBS_pair_5 The CBS dom 98.3 6.8E-07 1.5E-11 70.0 4.5 46 167-212 52-97 (98)
109 cd04603 CBS_pair_KefB_assoc Th 98.3 1.2E-06 2.7E-11 69.4 5.5 55 155-212 56-110 (111)
110 cd04617 CBS_pair_4 The CBS dom 98.2 1.9E-06 4.1E-11 69.0 5.5 60 153-212 56-117 (118)
111 COG4536 CorB Putative Mg2+ and 98.2 4.9E-06 1.1E-10 79.3 8.9 125 153-312 198-322 (423)
112 PRK14869 putative manganese-de 98.2 6.4E-07 1.4E-11 91.3 2.7 149 147-312 238-391 (546)
113 TIGR00400 mgtE Mg2+ transporte 98.2 1.9E-06 4.1E-11 85.9 5.9 110 155-312 195-304 (449)
114 cd04619 CBS_pair_6 The CBS dom 98.2 4E-06 8.7E-11 66.7 6.1 56 154-212 58-113 (114)
115 cd04597 CBS_pair_DRTGG_assoc2 98.1 4.5E-06 9.8E-11 67.0 5.4 54 155-211 58-111 (113)
116 PRK05567 inosine 5'-monophosph 98.1 5.6E-06 1.2E-10 83.3 7.2 119 155-312 147-265 (486)
117 COG4535 CorC Putative Mg2+ and 98.1 7.2E-06 1.6E-10 73.7 6.5 123 153-312 65-187 (293)
118 cd04801 CBS_pair_M50_like This 98.1 4.8E-06 1E-10 65.9 4.7 57 154-211 56-112 (114)
119 cd04627 CBS_pair_14 The CBS do 98.0 1E-05 2.2E-10 65.2 6.1 50 158-210 71-120 (123)
120 cd04625 CBS_pair_12 The CBS do 98.0 1.9E-05 4.1E-10 62.1 6.9 54 155-212 58-111 (112)
121 cd04614 CBS_pair_1 The CBS dom 98.0 1.1E-05 2.5E-10 62.5 5.1 61 150-212 35-95 (96)
122 cd04597 CBS_pair_DRTGG_assoc2 98.0 1.1E-05 2.3E-10 64.8 5.0 51 255-311 62-112 (113)
123 cd04596 CBS_pair_DRTGG_assoc T 98.0 1.8E-05 3.9E-10 62.1 6.2 56 154-212 52-107 (108)
124 cd04641 CBS_pair_28 The CBS do 98.0 1.3E-05 2.8E-10 64.2 5.5 48 259-312 1-48 (120)
125 cd04642 CBS_pair_29 The CBS do 98.0 1.7E-05 3.7E-10 64.1 6.0 54 156-212 72-125 (126)
126 cd04607 CBS_pair_NTP_transfera 97.9 1.6E-05 3.5E-10 62.8 5.6 54 155-211 58-111 (113)
127 cd04620 CBS_pair_7 The CBS dom 97.9 1.7E-05 3.6E-10 62.8 5.7 56 154-212 57-114 (115)
128 cd04623 CBS_pair_10 The CBS do 97.9 3.2E-05 6.9E-10 60.6 7.0 55 154-212 58-112 (113)
129 cd05808 CBM20_alpha_amylase Al 97.9 7.2E-05 1.6E-09 58.2 8.8 54 21-76 1-63 (95)
130 cd04630 CBS_pair_17 The CBS do 97.9 3E-05 6.4E-10 61.4 6.7 55 154-212 59-113 (114)
131 cd04587 CBS_pair_CAP-ED_DUF294 97.9 2.3E-05 5.1E-10 61.5 6.0 55 155-212 58-112 (113)
132 cd04615 CBS_pair_2 The CBS dom 97.9 3.4E-05 7.3E-10 60.7 6.8 57 152-211 55-111 (113)
133 PF00686 CBM_20: Starch bindin 97.9 2.9E-05 6.2E-10 60.9 6.3 57 20-76 1-68 (96)
134 PRK07107 inosine 5-monophospha 97.9 2E-05 4.4E-10 79.4 6.7 59 154-213 160-218 (502)
135 COG0296 GlgB 1,4-alpha-glucan 97.9 5.7E-05 1.2E-09 77.4 9.9 165 20-191 35-231 (628)
136 cd04640 CBS_pair_27 The CBS do 97.9 1.9E-05 4.1E-10 64.0 5.1 60 153-212 62-125 (126)
137 cd04606 CBS_pair_Mg_transporte 97.9 2.3E-05 5.1E-10 61.5 5.3 56 155-213 53-108 (109)
138 PRK07807 inosine 5-monophospha 97.9 6E-05 1.3E-09 75.6 9.1 58 155-215 148-205 (479)
139 cd04586 CBS_pair_BON_assoc Thi 97.9 2.4E-05 5.3E-10 64.0 5.3 56 153-212 79-134 (135)
140 smart00116 CBS Domain in cysta 97.8 5E-05 1.1E-09 49.5 5.8 47 167-214 2-48 (49)
141 cd04800 CBS_pair_CAP-ED_DUF294 97.8 3.4E-05 7.5E-10 60.5 5.7 55 154-212 56-110 (111)
142 cd04595 CBS_pair_DHH_polyA_Pol 97.8 3.8E-05 8.2E-10 60.2 5.9 55 153-211 54-108 (110)
143 cd04600 CBS_pair_HPP_assoc Thi 97.8 3.1E-05 6.8E-10 62.0 5.5 57 153-212 67-123 (124)
144 cd04582 CBS_pair_ABC_OpuCA_ass 97.8 4E-05 8.6E-10 59.6 5.9 54 156-212 52-105 (106)
145 cd04626 CBS_pair_13 The CBS do 97.8 3.7E-05 8E-10 60.4 5.7 54 154-211 56-109 (111)
146 PRK10892 D-arabinose 5-phospha 97.8 3.2E-05 7E-10 73.6 6.3 55 154-212 268-322 (326)
147 cd04629 CBS_pair_16 The CBS do 97.8 3.5E-05 7.5E-10 60.6 5.5 55 154-212 59-113 (114)
148 cd02860 Pullulanase_N_term Pul 97.8 6.4E-05 1.4E-09 59.3 6.8 64 23-90 10-85 (100)
149 cd04636 CBS_pair_23 The CBS do 97.8 4.7E-05 1E-09 62.1 6.2 55 154-212 77-131 (132)
150 cd04633 CBS_pair_20 The CBS do 97.8 4.1E-05 8.8E-10 61.0 5.7 56 153-212 65-120 (121)
151 cd04621 CBS_pair_8 The CBS dom 97.8 5E-05 1.1E-09 62.7 6.3 57 152-212 78-134 (135)
152 cd04585 CBS_pair_ACT_assoc2 Th 97.8 4.6E-05 9.9E-10 60.4 5.8 57 153-212 65-121 (122)
153 cd04593 CBS_pair_EriC_assoc_ba 97.8 4.8E-05 1E-09 60.2 5.8 55 156-212 59-114 (115)
154 cd04610 CBS_pair_ParBc_assoc T 97.8 4.7E-05 1E-09 59.2 5.7 55 155-212 52-106 (107)
155 cd04599 CBS_pair_GGDEF_assoc2 97.8 6.3E-05 1.4E-09 58.2 6.4 53 155-211 51-103 (105)
156 COG0517 FOG: CBS domain [Gener 97.8 4.7E-05 1E-09 60.1 5.6 52 156-210 63-116 (117)
157 cd04635 CBS_pair_22 The CBS do 97.8 4.5E-05 9.7E-10 60.9 5.5 57 153-212 65-121 (122)
158 cd04592 CBS_pair_EriC_assoc_eu 97.8 4.7E-05 1E-09 63.1 5.6 47 260-312 2-48 (133)
159 cd04602 CBS_pair_IMPDH_2 This 97.8 5.1E-05 1.1E-09 60.2 5.5 54 156-212 58-113 (114)
160 cd04613 CBS_pair_SpoIVFB_EriC_ 97.8 5.5E-05 1.2E-09 59.3 5.6 55 155-211 58-112 (114)
161 cd04590 CBS_pair_CorC_HlyC_ass 97.7 4.6E-05 1E-09 59.7 5.1 52 156-211 58-109 (111)
162 cd04631 CBS_pair_18 The CBS do 97.7 4.7E-05 1E-09 61.0 5.2 55 155-212 70-124 (125)
163 cd04583 CBS_pair_ABC_OpuCA_ass 97.7 6E-05 1.3E-09 58.7 5.6 54 155-211 54-107 (109)
164 cd04601 CBS_pair_IMPDH This cd 97.7 5.9E-05 1.3E-09 58.8 5.6 55 155-212 54-109 (110)
165 smart00116 CBS Domain in cysta 97.7 6.1E-05 1.3E-09 49.1 4.7 46 261-312 2-47 (49)
166 cd04639 CBS_pair_26 The CBS do 97.7 5.6E-05 1.2E-09 59.2 5.2 54 155-211 56-109 (111)
167 cd04612 CBS_pair_SpoIVFB_EriC_ 97.7 7.6E-05 1.7E-09 58.3 5.8 55 155-212 56-110 (111)
168 cd04611 CBS_pair_PAS_GGDEF_DUF 97.7 9.2E-05 2E-09 57.8 6.3 57 153-212 54-110 (111)
169 cd04803 CBS_pair_15 The CBS do 97.7 7.5E-05 1.6E-09 59.5 5.8 57 153-212 65-121 (122)
170 cd04802 CBS_pair_3 The CBS dom 97.7 0.00012 2.6E-09 57.4 6.9 55 153-211 56-110 (112)
171 cd04604 CBS_pair_KpsF_GutQ_ass 97.7 6.9E-05 1.5E-09 58.8 5.4 55 155-212 59-113 (114)
172 TIGR01303 IMP_DH_rel_1 IMP deh 97.7 6.9E-05 1.5E-09 75.1 6.6 58 155-215 146-203 (475)
173 cd04605 CBS_pair_MET2_assoc Th 97.7 8.8E-05 1.9E-09 58.0 5.8 53 156-211 56-108 (110)
174 cd04588 CBS_pair_CAP-ED_DUF294 97.7 7.8E-05 1.7E-09 58.3 5.5 54 155-211 55-108 (110)
175 cd04632 CBS_pair_19 The CBS do 97.7 7.3E-05 1.6E-09 60.4 5.3 56 154-211 70-126 (128)
176 cd05818 CBM20_water_dikinase P 97.7 0.00039 8.5E-09 54.1 9.1 54 20-76 1-61 (92)
177 PRK11543 gutQ D-arabinose 5-ph 97.7 8.3E-05 1.8E-09 70.6 6.3 55 155-212 263-317 (321)
178 PLN02274 inosine-5'-monophosph 97.6 0.0001 2.2E-09 74.5 6.9 62 154-216 162-223 (505)
179 cd04589 CBS_pair_CAP-ED_DUF294 97.6 0.00011 2.4E-09 57.6 5.8 56 153-212 55-110 (111)
180 cd04622 CBS_pair_9 The CBS dom 97.6 9.8E-05 2.1E-09 57.9 5.4 54 156-212 59-112 (113)
181 cd04643 CBS_pair_30 The CBS do 97.6 0.0001 2.2E-09 58.1 5.4 47 260-312 2-48 (116)
182 cd04594 CBS_pair_EriC_assoc_ar 97.6 0.00012 2.6E-09 57.0 5.6 53 156-212 51-103 (104)
183 cd02855 Glycogen_branching_enz 97.6 0.00038 8.2E-09 54.9 8.4 68 22-90 22-96 (106)
184 cd04624 CBS_pair_11 The CBS do 97.6 0.00013 2.9E-09 57.2 5.6 54 155-211 57-110 (112)
185 cd04584 CBS_pair_ACT_assoc Thi 97.6 0.00014 3.1E-09 57.7 5.8 56 153-212 65-120 (121)
186 cd04637 CBS_pair_24 The CBS do 97.6 0.00014 3E-09 58.1 5.5 55 155-212 67-121 (122)
187 PRK01862 putative voltage-gate 97.5 0.00017 3.7E-09 74.1 7.0 59 155-215 512-571 (574)
188 cd05814 CBM20_Prei4 Prei4, N-t 97.5 0.00031 6.7E-09 57.4 7.1 56 22-77 2-67 (120)
189 cd04608 CBS_pair_PALP_assoc Th 97.5 0.0002 4.2E-09 58.2 5.8 48 259-312 2-49 (124)
190 cd02856 Glycogen_debranching_e 97.5 0.00034 7.3E-09 55.5 6.8 53 23-79 11-67 (103)
191 cd05809 CBM20_beta_amylase Bet 97.5 0.00075 1.6E-08 53.2 8.7 57 20-76 2-68 (99)
192 cd05820 CBM20_novamyl Novamyl 97.5 0.00079 1.7E-08 53.5 8.6 55 20-76 2-70 (103)
193 COG2905 Predicted signal-trans 97.4 0.00023 5E-09 71.2 6.1 57 153-213 212-268 (610)
194 PTZ00314 inosine-5'-monophosph 97.4 0.00025 5.5E-09 71.5 6.4 61 154-215 158-218 (495)
195 cd05813 CBM20_genethonin_1 Gen 97.4 0.00058 1.3E-08 53.3 7.1 54 21-76 1-62 (95)
196 cd04591 CBS_pair_EriC_assoc_eu 97.4 0.00037 8.1E-09 54.8 6.0 49 160-212 56-104 (105)
197 cd04609 CBS_pair_PALP_assoc2 T 97.4 0.00029 6.4E-09 54.7 5.2 46 260-312 2-47 (110)
198 cd04638 CBS_pair_25 The CBS do 97.4 0.00049 1.1E-08 53.5 6.4 52 156-211 53-104 (106)
199 cd04598 CBS_pair_GGDEF_assoc T 97.4 0.00039 8.5E-09 55.1 5.7 57 153-212 59-118 (119)
200 PRK15094 magnesium/cobalt effl 97.4 0.00027 5.9E-09 66.6 5.3 56 156-215 134-189 (292)
201 TIGR03520 GldE gliding motilit 97.3 0.00025 5.3E-09 70.0 5.1 55 253-312 193-249 (408)
202 PLN02447 1,4-alpha-glucan-bran 97.3 0.00046 1E-08 72.4 7.3 64 22-88 115-192 (758)
203 PRK12313 glycogen branching en 97.3 0.00061 1.3E-08 70.9 8.2 67 22-90 39-112 (633)
204 cd04634 CBS_pair_21 The CBS do 97.3 0.00058 1.2E-08 56.7 6.2 54 154-211 88-141 (143)
205 PRK12568 glycogen branching en 97.3 0.00064 1.4E-08 71.2 7.4 65 22-89 139-211 (730)
206 cd02205 CBS_pair The CBS domai 97.3 0.00054 1.2E-08 52.6 5.3 53 157-212 60-112 (113)
207 KOG0475 Cl- channel CLC-3 and 97.3 0.0009 1.9E-08 67.7 8.0 135 166-312 557-693 (696)
208 TIGR01137 cysta_beta cystathio 97.2 0.00046 9.9E-09 68.7 5.1 54 253-312 337-390 (454)
209 COG4109 Predicted transcriptio 97.2 0.001 2.2E-08 63.2 6.8 66 153-221 247-312 (432)
210 TIGR00393 kpsF KpsF/GutQ famil 97.1 0.0004 8.6E-09 64.0 3.9 54 253-312 157-211 (268)
211 cd05811 CBM20_glucoamylase Glu 97.1 0.0023 5.1E-08 50.8 7.8 59 18-76 4-73 (106)
212 cd02852 Isoamylase_N_term Isoa 97.1 0.0015 3.3E-08 53.1 6.8 60 23-84 9-76 (119)
213 TIGR01302 IMP_dehydrog inosine 97.1 0.00071 1.5E-08 67.6 5.6 60 154-215 142-201 (450)
214 PRK14706 glycogen branching en 97.1 0.0014 3E-08 68.2 7.8 66 22-90 39-112 (639)
215 COG2239 MgtE Mg/Co/Ni transpor 97.1 0.00075 1.6E-08 67.1 5.5 58 155-215 196-253 (451)
216 cd05817 CBM20_DSP Dual-specifi 97.1 0.0023 5.1E-08 50.5 7.3 52 23-76 2-62 (100)
217 PRK14705 glycogen branching en 97.0 0.0012 2.5E-08 72.8 6.6 63 22-86 639-709 (1224)
218 PRK05402 glycogen branching en 97.0 0.0019 4E-08 68.3 7.8 66 21-87 131-203 (726)
219 cd05816 CBM20_DPE2_repeat2 Dis 97.0 0.0033 7E-08 49.5 7.3 52 23-76 2-64 (99)
220 cd05807 CBM20_CGTase CGTase, C 97.0 0.0057 1.2E-07 48.3 8.5 57 20-76 2-70 (101)
221 cd05467 CBM20 The family 20 ca 96.9 0.0044 9.5E-08 48.0 7.5 53 23-76 2-65 (96)
222 cd05810 CBM20_alpha_MTH Glucan 96.8 0.0094 2E-07 46.8 8.6 54 21-76 1-64 (97)
223 TIGR02402 trehalose_TreZ malto 96.8 0.0035 7.5E-08 64.1 7.3 72 23-102 1-75 (542)
224 cd02853 MTHase_N_term Maltooli 96.6 0.0082 1.8E-07 45.7 6.8 62 23-90 10-73 (85)
225 TIGR01186 proV glycine betaine 96.4 0.0062 1.3E-07 59.2 6.3 57 155-215 302-358 (363)
226 PRK05402 glycogen branching en 96.3 0.0078 1.7E-07 63.7 6.5 62 22-86 29-95 (726)
227 TIGR01515 branching_enzym alph 96.0 0.014 3E-07 60.7 6.3 67 22-90 29-103 (613)
228 cd05815 CBM20_DPE2_repeat1 Dis 96.0 0.02 4.3E-07 45.1 5.9 54 23-76 2-65 (101)
229 PF11806 DUF3327: Domain of un 95.5 0.12 2.6E-06 42.4 9.1 81 21-102 2-112 (122)
230 PRK10070 glycine betaine trans 95.5 0.031 6.8E-07 55.0 6.6 58 156-217 338-395 (400)
231 TIGR03415 ABC_choXWV_ATP choli 95.5 0.028 6E-07 55.0 6.2 47 258-312 332-378 (382)
232 PF03423 CBM_25: Carbohydrate 95.3 0.049 1.1E-06 41.9 5.6 61 22-82 3-76 (87)
233 cd05806 CBM20_laforin Laforin 95.1 0.35 7.6E-06 39.1 10.3 55 22-76 2-74 (112)
234 PLN02316 synthase/transferase 94.6 0.11 2.4E-06 56.7 8.2 49 31-79 170-222 (1036)
235 COG1125 OpuBA ABC-type proline 94.5 0.71 1.5E-05 42.9 11.9 132 136-312 169-308 (309)
236 PRK11573 hypothetical protein; 94.2 0.099 2.1E-06 51.7 6.2 50 165-215 262-311 (413)
237 PLN02950 4-alpha-glucanotransf 94.2 0.42 9E-06 51.9 11.3 70 16-87 148-233 (909)
238 TIGR02104 pulA_typeI pullulana 94.1 0.13 2.8E-06 53.4 7.2 65 23-90 21-95 (605)
239 PLN02960 alpha-amylase 94.0 0.047 1E-06 58.2 3.6 52 24-77 132-198 (897)
240 COG1253 TlyC Hemolysins and re 93.6 0.15 3.2E-06 50.7 6.2 49 166-215 280-328 (429)
241 PRK10439 enterobactin/ferric e 93.4 0.47 1E-05 46.9 9.4 86 17-103 35-162 (411)
242 KOG0474 Cl- channel CLC-7 and 93.3 0.11 2.3E-06 53.2 4.6 51 159-212 694-744 (762)
243 PLN02950 4-alpha-glucanotransf 93.3 0.67 1.4E-05 50.4 10.8 60 17-76 5-74 (909)
244 PLN02316 synthase/transferase 92.4 0.63 1.4E-05 51.0 9.2 59 21-79 329-399 (1036)
245 COG4175 ProV ABC-type proline/ 92.3 0.14 3.1E-06 48.7 3.8 109 153-312 272-381 (386)
246 TIGR02100 glgX_debranch glycog 91.5 0.47 1E-05 50.0 7.0 55 22-80 15-75 (688)
247 TIGR02102 pullulan_Gpos pullul 90.2 0.6 1.3E-05 51.6 6.4 65 23-89 329-408 (1111)
248 KOG2550 IMP dehydrogenase/GMP 89.2 0.44 9.6E-06 46.6 4.0 55 156-213 172-226 (503)
249 TIGR03415 ABC_choXWV_ATP choli 88.2 0.91 2E-05 44.5 5.6 47 166-215 334-380 (382)
250 cd02857 CD_pullulan_degrading_ 87.8 2 4.2E-05 34.0 6.4 58 19-76 16-79 (116)
251 PRK03705 glycogen debranching 87.6 1 2.2E-05 47.3 5.8 54 22-79 20-77 (658)
252 TIGR02103 pullul_strch alpha-1 86.4 2.7 5.9E-05 45.6 8.2 67 22-90 136-216 (898)
253 COG1125 OpuBA ABC-type proline 85.1 1.4 3.1E-05 40.9 4.7 38 174-212 270-307 (309)
254 COG4535 CorC Putative Mg2+ and 84.9 0.35 7.6E-06 44.0 0.6 52 256-312 74-125 (293)
255 PF01357 Pollen_allerg_1: Poll 84.8 2.9 6.3E-05 31.6 5.6 61 17-82 10-76 (82)
256 KOG0470 1,4-alpha-glucan branc 82.0 1.6 3.5E-05 45.6 4.1 45 17-64 110-157 (757)
257 KOG0476 Cl- channel CLC-2 and 81.1 1.1 2.4E-05 47.0 2.6 59 253-315 590-650 (931)
258 PLN03244 alpha-amylase; Provis 80.4 1.9 4.1E-05 45.9 4.0 46 21-68 132-185 (872)
259 PRK14510 putative bifunctional 78.6 7.6 0.00017 43.8 8.2 56 21-80 23-84 (1221)
260 PF02903 Alpha-amylase_N: Alph 78.3 2.6 5.6E-05 34.0 3.5 60 17-76 19-87 (120)
261 COG4536 CorB Putative Mg2+ and 78.2 3.7 8E-05 40.0 4.9 59 155-214 265-323 (423)
262 COG3794 PetE Plastocyanin [Ene 77.2 8.6 0.00019 31.8 6.2 48 22-73 63-111 (128)
263 COG4175 ProV ABC-type proline/ 69.3 8.8 0.00019 36.9 5.0 49 165-215 335-383 (386)
264 PLN02877 alpha-amylase/limit d 68.1 19 0.00042 39.5 7.9 63 22-89 223-302 (970)
265 KOG0475 Cl- channel CLC-3 and 66.1 10 0.00023 39.2 5.1 54 157-214 641-694 (696)
266 PRK10785 maltodextrin glucosid 64.8 25 0.00055 36.5 7.9 63 17-79 17-87 (598)
267 TIGR03503 conserved hypothetic 59.6 22 0.00047 34.8 5.8 40 36-78 153-194 (374)
268 KOG1263 Multicopper oxidases [ 57.3 7.4 0.00016 40.2 2.4 46 42-88 84-134 (563)
269 KOG0476 Cl- channel CLC-2 and 57.2 17 0.00037 38.5 4.9 60 154-215 587-647 (931)
270 PRK11388 DNA-binding transcrip 55.7 74 0.0016 33.2 9.5 104 176-308 61-165 (638)
271 PF11896 DUF3416: Domain of un 49.6 38 0.00082 29.9 5.3 39 41-82 55-98 (187)
272 TIGR02375 pseudoazurin pseudoa 48.3 68 0.0015 25.9 6.2 48 21-73 23-71 (116)
273 PF13473 Cupredoxin_1: Cupredo 45.5 25 0.00054 27.3 3.2 17 56-72 73-90 (104)
274 PF14347 DUF4399: Domain of un 45.1 45 0.00097 25.6 4.4 32 56-88 50-81 (87)
275 KOG2118 Predicted membrane pro 43.0 33 0.00071 35.0 4.4 124 151-309 200-324 (498)
276 PLN00115 pollen allergen group 42.9 85 0.0018 25.6 6.0 47 31-81 47-96 (118)
277 PRK10301 hypothetical protein; 39.6 1E+02 0.0023 25.1 6.1 74 5-79 22-113 (124)
278 TIGR02657 amicyanin amicyanin. 36.1 1.2E+02 0.0026 22.5 5.6 48 22-73 20-69 (83)
279 PF08400 phage_tail_N: Prophag 34.4 24 0.00053 29.4 1.6 54 56-111 46-101 (134)
280 PLN03023 Expansin-like B1; Pro 34.4 1.1E+02 0.0025 28.1 6.1 54 18-77 159-216 (247)
281 KOG0045 Cytosolic Ca2+-depende 33.8 39 0.00083 35.4 3.3 26 66-91 115-143 (612)
282 TIGR03102 halo_cynanin halocya 33.1 2.1E+02 0.0046 23.0 6.8 17 56-73 83-99 (115)
283 PF11797 DUF3324: Protein of u 32.9 1.9E+02 0.0041 23.9 6.8 45 32-84 73-125 (140)
284 PF03370 CBM_21: Putative phos 32.5 1.6E+02 0.0034 23.4 6.0 62 18-79 18-99 (113)
285 PF07495 Y_Y_Y: Y_Y_Y domain; 31.2 44 0.00096 23.2 2.3 25 60-84 30-58 (66)
286 PF13365 Trypsin_2: Trypsin-li 30.6 39 0.00086 25.9 2.2 20 184-204 101-120 (120)
287 PF04459 DUF512: Protein of un 28.7 2.1E+02 0.0046 25.5 6.7 53 164-216 97-158 (204)
288 PF05738 Cna_B: Cna protein B- 28.3 2.1E+02 0.0045 19.9 5.7 24 56-80 26-51 (70)
289 cd01760 RBD Ubiquitin-like dom 26.0 76 0.0016 23.4 2.8 32 157-188 2-35 (72)
290 PF14827 Cache_3: Sensory doma 26.0 63 0.0014 25.6 2.6 17 190-207 93-109 (116)
291 PF08308 PEGA: PEGA domain; I 25.3 2.1E+02 0.0046 20.2 5.1 41 23-78 4-45 (71)
292 TIGR03009 plancto_dom_2 Planct 24.1 91 0.002 28.0 3.5 17 74-90 66-85 (210)
293 cd02958 UAS UAS family; UAS is 23.1 93 0.002 24.3 3.1 40 177-216 63-109 (114)
294 cd01817 RGS12_RBD Ubiquitin do 22.9 94 0.002 23.1 2.8 30 157-186 2-32 (73)
295 PF02743 Cache_1: Cache domain 22.8 99 0.0021 22.4 3.0 17 190-207 18-34 (81)
296 PF00127 Copper-bind: Copper b 21.8 1.7E+02 0.0037 22.4 4.3 17 22-38 26-43 (99)
297 cd06404 PB1_aPKC PB1 domain is 21.7 1.1E+02 0.0024 23.3 3.1 52 139-191 23-76 (83)
298 PF10648 Gmad2: Immunoglobulin 21.7 3.7E+02 0.008 20.5 6.6 20 56-75 57-79 (88)
299 cd00912 ML The ML (MD-2-relate 21.3 2.7E+02 0.0059 22.2 5.6 60 17-76 30-94 (127)
300 COG3397 Uncharacterized protei 21.3 4.4E+02 0.0095 25.0 7.4 31 21-53 114-150 (308)
301 cd00503 Frataxin Frataxin is a 21.3 58 0.0013 25.8 1.5 18 67-85 66-83 (105)
302 PRK02710 plastocyanin; Provisi 21.2 2.9E+02 0.0063 22.0 5.7 14 58-72 89-102 (119)
303 TIGR03000 plancto_dom_1 Planct 20.5 78 0.0017 23.7 1.9 47 22-80 4-56 (75)
304 PF03066 Nucleoplasmin: Nucleo 20.4 73 0.0016 26.9 2.1 19 22-40 87-105 (149)
305 KOG1692 Putative cargo transpo 20.1 4.4E+02 0.0094 23.5 6.8 54 17-75 39-95 (201)
No 1
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.95 E-value=8.8e-28 Score=218.11 Aligned_cols=161 Identities=16% Similarity=0.314 Sum_probs=140.6
Q ss_pred CCchhhhhcCCCCCCCCCHHHHHH-----HHHhhhhhccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeE
Q 020637 120 NMEVDDVVMRPEGFAQYSEADLQL-----SRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLW 194 (323)
Q Consensus 120 ~~dl~~~~~~~~~~~~~s~~~l~~-----~~~~~~~~l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~ 194 (323)
..|+++++++.++..||+++|+|. |+++++|.+++.+|+|+| |++|+++.+++++.+|+++|.+|+|+++||+
T Consensus 205 ~~Dld~aL~~~~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIM--SrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~ 282 (382)
T COG3448 205 SEDLDAALQRLGETLDIDRDDLERLLRETELQALRRRMGELTCADIM--SRDVVTVSTDTSIDHARKLLQEHRIKALPVL 282 (382)
T ss_pred HHHHHHHHHhcCceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhc--CccceecCCcCChHHHHHHHHHcCccccccc
Confidence 789999999999999999999977 999999999999999999 8999999999999999999999999999999
Q ss_pred eCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHH
Q 020637 195 DDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVA 274 (323)
Q Consensus 195 d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa 274 (323)
|+ ..+++||||.+||.+ .... +++ +.++ .+ +++.++.+|++++.|+.||++..|++
T Consensus 283 d~-~~rl~GiVt~~dl~~---~a~~--~p~----------qrlr----~~----~~~~vk~imt~~v~tv~pdtpa~~lv 338 (382)
T COG3448 283 DE-HRRLVGIVTQRDLLK---HARP--SPF----------QRLR----FL----RPPTVKGIMTTPVVTVRPDTPAVELV 338 (382)
T ss_pred cc-ccceeeeeeHHHHhh---ccCc--chH----------HHhh----cc----CCCcccccccCcceeecCCCcHHHHH
Confidence 96 689999999999953 2211 111 1111 11 23456669999999999999999999
Q ss_pred HHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 275 LKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 275 ~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
.++.+.+.|+|||+|. + | +++|||||+|++.+
T Consensus 339 p~lad~g~H~lpvld~--~-g---~lvGIvsQtDliaa 370 (382)
T COG3448 339 PRLADEGLHALPVLDA--A-G---KLVGIVSQTDLIAA 370 (382)
T ss_pred HHhhcCCcceeeEEcC--C-C---cEEEEeeHHHHHHH
Confidence 9999999999999996 3 5 89999999999988
No 2
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=99.93 E-value=1.3e-25 Score=170.86 Aligned_cols=79 Identities=46% Similarity=0.944 Sum_probs=74.0
Q ss_pred eeEEEEEeeCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEEeCCceEEEEEEEcCeeecCCCCCeeeCCCCccceE
Q 020637 20 LVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCV 99 (323)
Q Consensus 20 ~~~v~F~w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~g~~~~~~~LppG~y~YkFiVDG~w~~d~~~p~~~d~~G~~nnv 99 (323)
+++|+|+|+++|++|+|+|||++|++..||.+.+ .+ |++++.||||.|+|||+|||.|.+||++|++.|++|+.||+
T Consensus 1 ~~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~~--~~-~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~~d~~G~~NN~ 77 (79)
T cd02859 1 MVPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKSG--KG-FSATLRLPPGKYQYKFIVDGEWRHSPDLPTETDDEGNVNNV 77 (79)
T ss_pred CeEEEEEEcCCCcEEEEEEEcCCCCccccceECC--CC-cEEEEEcCCCCEEEEEEECCEEEeCCCCCccCCCCCcEeee
Confidence 4799999999999999999999999878999875 44 99999999999999999999999999999999999999999
Q ss_pred EE
Q 020637 100 YI 101 (323)
Q Consensus 100 l~ 101 (323)
|.
T Consensus 78 i~ 79 (79)
T cd02859 78 ID 79 (79)
T ss_pred EC
Confidence 84
No 3
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.80 E-value=2.3e-19 Score=137.34 Aligned_cols=77 Identities=38% Similarity=0.752 Sum_probs=69.1
Q ss_pred eEEEEEeeC-CCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEEeCCceEEEEEEEcCeee-cCCCCCe-eeCCCCccc
Q 020637 21 VPVRFIWPN-GGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR-HDENQPH-VSGNYGVVN 97 (323)
Q Consensus 21 ~~v~F~w~~-~~~~V~l~Gsf~~W~~~~~m~~~~~~~g~~~~~~~LppG~y~YkFiVDG~w~-~d~~~p~-~~d~~G~~n 97 (323)
++++|+|.+ .+++|+|+|+|++|+ ..+|++.+ +|.|++++.|+||.|+|||+|||.|. .||.++. ..|++|+.|
T Consensus 2 ~~vtf~~~ap~a~~V~v~G~fn~W~-~~~m~~~~--~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~~~~~~~g~~n 78 (82)
T cd02861 2 VPVVFAYRGPEADSVYLAGSFNNWN-AIPMEREG--DGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAAYVDDGFGGKN 78 (82)
T ss_pred ccEEEEEECCCCCEEEEEeECCCCC-cccCEECC--CCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCceecCCCCccc
Confidence 589999986 569999999999998 47999864 69999999999999999999999998 9999985 668899999
Q ss_pred eEE
Q 020637 98 CVY 100 (323)
Q Consensus 98 nvl 100 (323)
|+|
T Consensus 79 ~v~ 81 (82)
T cd02861 79 AVF 81 (82)
T ss_pred eEc
Confidence 987
No 4
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.78 E-value=1e-18 Score=156.54 Aligned_cols=118 Identities=19% Similarity=0.309 Sum_probs=101.8
Q ss_pred cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhH
Q 020637 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI 234 (323)
Q Consensus 155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i 234 (323)
.++.++| |++++++++++||++|.++|.+++|+++||+|. ++++|++|.+|+.+++.... +.
T Consensus 172 ~~V~~~~--s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~--dk~vGiit~~dI~~aia~g~-----~~--------- 233 (294)
T COG2524 172 EKVKNLM--SKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD--DKIVGIITLSDIAKAIANGN-----LD--------- 233 (294)
T ss_pred chhhhhc--cCCceEecCCccHHHHHHHHHHcCccCCceecC--CceEEEEEHHHHHHHHHcCC-----cc---------
Confidence 4566678 799999999999999999999999999999984 39999999999988776431 10
Q ss_pred HHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
. .+.++|++.++++..|+.++||+++|..++++||-|+|+ + | +++||||++|||+.
T Consensus 234 ~----------------kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds--~-g---kpvGiITrTDIL~~ 289 (294)
T COG2524 234 A----------------KVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDS--N-G---KPVGIITRTDILTR 289 (294)
T ss_pred c----------------cHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEcc--C-C---cEEEEEehHHHHHH
Confidence 0 122369999999999999999999999999999999996 3 5 89999999999975
No 5
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.75 E-value=1.9e-17 Score=130.41 Aligned_cols=97 Identities=43% Similarity=0.706 Sum_probs=85.7
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~ 245 (323)
+++++++++++.+|+++|.++++.++||+|+++++++|+||..|+++.
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~-------------------------------- 49 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILI-------------------------------- 49 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhh--------------------------------
Confidence 689999999999999999999999999999645899999999998420
Q ss_pred cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
+. ++++.|+++|.+|+++|.+++++++||+|+ ++| +++||||.+||+++
T Consensus 50 -----------~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~~---~~~giit~~d~~~~ 98 (98)
T cd04618 50 -----------LR--LVSIHPERSLFDAALLLLKNKIHRLPVIDP--STG---TGLYILTSRRILKF 98 (98)
T ss_pred -----------ee--eEEeCCCCcHHHHHHHHHHCCCCEeeEEEC--CCC---CceEEeehhhhhcC
Confidence 11 678999999999999999999999999985 325 79999999999874
No 6
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]
Probab=99.69 E-value=6.3e-17 Score=151.23 Aligned_cols=90 Identities=36% Similarity=0.690 Sum_probs=82.7
Q ss_pred CCeeeEEEEEeeCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEEeCCceEEEEEEEcCeeecCCCCCeeeCCCCcc
Q 020637 17 GSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVV 96 (323)
Q Consensus 17 ~~~~~~v~F~w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~g~~~~~~~LppG~y~YkFiVDG~w~~d~~~p~~~d~~G~~ 96 (323)
.....+++|+|..+++.|+|+|+|.+|...++|.+..+..|.|+.++.|++|.|+|||+|||.|++|++.|++.|..|+.
T Consensus 76 ~~~~~pvvi~W~~gg~~v~v~gS~~nWk~~~~l~~~~~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta~d~~Gn~ 155 (289)
T KOG1616|consen 76 REQGRPTVIRWSQGGKEVYVDGSFGNWKTKIPLVRSGKNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTAEDSLGNL 155 (289)
T ss_pred cccCCceEEEecCCCceEEEecccccccccccceecCCCcccceeeEecCCceEEEEEecCCceecCCCCcccccccCCc
Confidence 56689999999999999999999999999899998765556699999999999999999999999999999999999999
Q ss_pred ceEEEecCCC
Q 020637 97 NCVYIAVPQP 106 (323)
Q Consensus 97 nnvl~v~~~~ 106 (323)
||++.|....
T Consensus 156 ~N~i~v~~~~ 165 (289)
T KOG1616|consen 156 NNILEVQDPD 165 (289)
T ss_pred ccceEecCcc
Confidence 9999994433
No 7
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.68 E-value=1.7e-16 Score=153.73 Aligned_cols=155 Identities=35% Similarity=0.610 Sum_probs=124.0
Q ss_pred HHHhhhhhccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCC
Q 020637 144 SRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSN 223 (323)
Q Consensus 144 ~~~~~~~~l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~ 223 (323)
....+.+||..++||+++|++.+++++|..+++++||.+|..++++++||||....+++|+++.+||+.++...+.....
T Consensus 55 ~~~~~~~~~~~~~~~~~~p~~~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~~~~ 134 (381)
T KOG1764|consen 55 AVDTLSKFMKSHTCYDLLPTSSKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKSKSS 134 (381)
T ss_pred hhHHHHHHHhccCcccccCCcceeEEeeCCCcHHHHHHHHHhhceeeeccccCccceeEEEEEHHHHHHHHHHhhccCCc
Confidence 56689999999999999999999999999999999999999999999999999889999999999999988877653211
Q ss_pred C-ChhhhhhhhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEE
Q 020637 224 L-TEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILY 302 (323)
Q Consensus 224 l-~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvG 302 (323)
. ..+.++...+..+++..... +..-.++++.+.|+.++.+++..++++++|||||+|. +.+ .+++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~--~~~---~v~~ 200 (381)
T KOG1764|consen 135 LDNIEVLEDSQLSKRREVECLL---------KETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVIDP--ETG---EVLY 200 (381)
T ss_pred HHHHhhhhhhhccccchhhhhh---------ccccCCCceeecCcHHHHHHHHHHHhCCccceeeecc--ccc---ceee
Confidence 1 11122222222233321111 1123455599999999999999999999999999994 445 7999
Q ss_pred Eeeccccccc
Q 020637 303 LASLSDILKC 312 (323)
Q Consensus 303 IIT~~dIl~~ 312 (323)
++|++.||++
T Consensus 201 ilt~~rIl~~ 210 (381)
T KOG1764|consen 201 ILTQRRILKF 210 (381)
T ss_pred ehhHHHHHHH
Confidence 9999999999
No 8
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.67 E-value=2e-15 Score=122.01 Aligned_cols=119 Identities=20% Similarity=0.254 Sum_probs=92.9
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~ 245 (323)
+++++++++++.+|++.|.++++.++||+|+ +++++|++|..|++.++...... ... . . ..+....
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~~~Giv~~~dl~~~~~~~~~~-~~~--~-----~---~~~~~~~-- 67 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDE-NGKVVDVYSRFDVINLAKEGAYN-NLD--L-----T---VGEALER-- 67 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC-CCeEEEEEeHHHHHHHHhcCccc-ccc--C-----C---HHHHHhh--
Confidence 5788999999999999999999999999995 78999999999998654321100 000 0 0 1111000
Q ss_pred cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
..+|..++.++.+++++.+|+.+|.+++++++||+|+ + | +++||||++||+++
T Consensus 68 --------~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~--~-~---~~~Givt~~di~~~ 120 (120)
T cd04641 68 --------RSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDE--N-K---RVEGIISLSDILQF 120 (120)
T ss_pred --------cccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECC--C-C---CEEEEEEHHHhhcC
Confidence 1257788999999999999999999999999999985 3 5 79999999999875
No 9
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.62 E-value=5.9e-15 Score=120.34 Aligned_cols=125 Identities=26% Similarity=0.388 Sum_probs=93.4
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~ 245 (323)
+++++++++++.+|++.|.++++..+||+|+ .++++|+||..|+++......... ... ............
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~------~~~---~~~~~~~~~~~~ 71 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDE-KGKLIGNISASDLKGLLLSPDDLL------LYR---TITFKELSEKFT 71 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECC-CCcEEEEEEHHHhhhhhcCcchhh------ccc---chhhhhhhhhcc
Confidence 6789999999999999999999999999995 689999999999976442111000 000 000000000000
Q ss_pred cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
.....|..+++++.+++++.+|+.+|.+++++++||+|+ + + +++|+||.+||++|
T Consensus 72 ------~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~--~-~---~~~Giit~~dil~~ 126 (126)
T cd04642 72 ------DSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDE--E-G---KPIGVITLTDIISI 126 (126)
T ss_pred ------cccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECC--C-C---CEEEEEEHHHHhcC
Confidence 011257888999999999999999999999999999985 2 4 79999999999986
No 10
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.62 E-value=6.2e-15 Score=117.68 Aligned_cols=110 Identities=12% Similarity=0.199 Sum_probs=89.9
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~ 245 (323)
+++++..++++.+|++.|.+++...+||+|+ +++++|+||..|++.... . + +...
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~----~-------~--------~~~~----- 56 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDE-ENKVLGQVTLSDLLEIGP----N-------D--------YETL----- 56 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHhhcc----c-------c--------cccc-----
Confidence 4678999999999999999999999999995 789999999999864210 0 0 0000
Q ss_pred cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
.+.++|..++.++.+++++.+|+.+|.+++.+++||+|+ + | +++|+||.+||++.
T Consensus 57 ------~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~--~-~---~~~Giit~~di~~~ 111 (111)
T cd04603 57 ------KVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDK--E-G---KLVGTIYERELLRF 111 (111)
T ss_pred ------ChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcC--C-C---eEEEEEEhHHhhcC
Confidence 011257888899999999999999999999999999985 3 5 79999999999873
No 11
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.60 E-value=3e-14 Score=114.84 Aligned_cols=112 Identities=21% Similarity=0.270 Sum_probs=89.9
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~ 245 (323)
+++++++++++.+|++.|.++++..+||+|. +++++|+||..|+++.+..... . .... +.
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~-~~~~~Givt~~dl~~~~~~~~~----~-----~~~~---~~------- 61 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDE-DGDLVGVVSRKDLLKASIGGAD----L-----QKVP---VG------- 61 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHHHHHcCCC----c-----cCCC---HH-------
Confidence 5688999999999999999999999999995 6899999999999765431100 0 0000 11
Q ss_pred cccccCCCCCCCCC--CcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCC--CCcccEEEEeecccccc
Q 020637 246 LKRQMDGNGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPA--GSCQEILYLASLSDILK 311 (323)
Q Consensus 246 ~~~~~~~~~~im~~--~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~--g~~~~lvGIIT~~dIl~ 311 (323)
++|.+ ++.++.+++++.+|+.+|.+++++++||+|+ ++ | +++|+||++||++
T Consensus 62 ---------~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~--~~~~~---~l~Gvit~~~l~~ 117 (118)
T cd04617 62 ---------VIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEK--VDEGL---EVIGRITKTNITK 117 (118)
T ss_pred ---------HHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeC--CCccc---eEEEEEEhhheec
Confidence 14554 6889999999999999999999999999986 32 4 7999999999986
No 12
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.59 E-value=1e-14 Score=138.85 Aligned_cols=124 Identities=11% Similarity=0.173 Sum_probs=100.9
Q ss_pred cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhh
Q 020637 153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH 232 (323)
Q Consensus 153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~ 232 (323)
...++.|+|...++++++.+++++.+|+++|.++++..+||+|+ +|+++|+||.+|+.+++..- ..+
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~-~g~lvGivt~~Dl~~~~~~~----~~~-------- 266 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDD-NMKIEGIFTDGDLRRVFDMG----IDL-------- 266 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcC-CCcEEEEEecHHHHHHHhcC----CCc--------
Confidence 56689999953338999999999999999999999988888884 78999999999986543210 000
Q ss_pred hHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 233 ~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
.+. .+.++|+++++++.+++++.+|+.+|.++++++|||+|+ | +++||||++||+++
T Consensus 267 -----~~~-----------~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~----~---~lvGiit~~dil~~ 323 (326)
T PRK10892 267 -----RQA-----------SIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVADG----D---HLLGVLHMHDLLRA 323 (326)
T ss_pred -----ccC-----------CHHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEeeC----C---EEEEEEEhHHhHhc
Confidence 000 011268999999999999999999999999999999974 4 79999999999975
No 13
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.59 E-value=3e-14 Score=114.12 Aligned_cols=112 Identities=26% Similarity=0.417 Sum_probs=91.3
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~ 245 (323)
+|.++.+++++.+|++.|.+++...+||+|+ .|+++|+||..|+++.+....... . . ..+.
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~-~g~~~G~vt~~dl~~~~~~~~~~~--~------~---~~v~------- 62 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDP-HGKLAGVLTKTDVVRQMGRCGGPG--C------T---APVE------- 62 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECC-CCCEEEEEehHHHHHHHhhcCCCc--c------c---CCHH-------
Confidence 5788999999999999999999999999995 789999999999976543211000 0 0 0011
Q ss_pred cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (323)
Q Consensus 246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~ 311 (323)
++|.++++++.+++++.+|+..|.+++++++||+|+ +| +++|+||++|+++
T Consensus 63 ---------~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~~---~~~Gvi~~~dl~~ 113 (114)
T cd04619 63 ---------NVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDE---NA---RPLGVLNARDALK 113 (114)
T ss_pred ---------HHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECC---CC---cEEEEEEhHhhcc
Confidence 147788999999999999999999999999999985 35 7999999999986
No 14
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.59 E-value=4.3e-14 Score=112.92 Aligned_cols=113 Identities=18% Similarity=0.292 Sum_probs=91.2
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~ 245 (323)
+++++.+++++.+|++.|.+++++.+||.|++.++++|+||..|+++.+........ + . .+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~-----~---~---~v~------- 63 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPD-----R---V---NVY------- 63 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCC-----c---c---CHH-------
Confidence 578899999999999999999999999999533899999999999765432111000 0 0 011
Q ss_pred cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
++|.++++++.+++++.+|+.+|.+++.+++||+|+ | +++|+||..||+++
T Consensus 64 ---------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~----~---~~~Gvi~~~dl~~~ 114 (114)
T cd04630 64 ---------EIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN----N---ELIGIISLTDIFLA 114 (114)
T ss_pred ---------HHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC----C---EEEEEEEHHHhhcC
Confidence 147788999999999999999999999999999983 5 79999999999875
No 15
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.56 E-value=8.2e-14 Score=112.93 Aligned_cols=119 Identities=13% Similarity=0.203 Sum_probs=90.2
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~ 245 (323)
.++++..++++.+|++.|.++++.++||+|+++++++|++|..|+++.+......... .+. ..+...
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~---~~~------~~~~~~---- 68 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPG---LDP------LYPIPL---- 68 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccc---hhh------hhhhhh----
Confidence 3577899999999999999999999999996338999999999998755422110000 000 000000
Q ss_pred cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccc
Q 020637 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDI 309 (323)
Q Consensus 246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dI 309 (323)
....+|..++.++.+++++.+|+.+|.+++++++||+|+ + | +++|+||.+||
T Consensus 69 ------~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~-~---~~vGiit~~di 120 (123)
T cd04627 69 ------RDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDN--Q-G---NLIGNISVTDV 120 (123)
T ss_pred ------hhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECC--C-C---cEEEEEeHHHh
Confidence 011257899999999999999999999999999999985 3 4 79999999987
No 16
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.56 E-value=4.8e-14 Score=110.20 Aligned_cols=95 Identities=23% Similarity=0.386 Sum_probs=83.9
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~ 245 (323)
+++++++++++.+|++.|.+++++.+||+|+ .++++|++|..|++..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~-------------------------------- 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDD-DGKLSGIITERDLIAK-------------------------------- 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECC-CCCEEEEEEHHHHhcC--------------------------------
Confidence 5788999999999999999999999999995 6899999999998310
Q ss_pred cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
.+ +.++.+++++.+|+.+|.+++++++||+|+ + | +++|+||++||+++
T Consensus 49 ----------~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~--~-~---~~~Giit~~di~~~ 96 (96)
T cd04614 49 ----------SE---VVTATKRTTVSECAQKMKRNRIEQIPIING--N-D---KLIGLLRDHDLLKP 96 (96)
T ss_pred ----------CC---cEEecCCCCHHHHHHHHHHhCCCeeeEECC--C-C---cEEEEEEHHHhhcC
Confidence 01 578999999999999999999999999985 3 5 79999999999875
No 17
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.54 E-value=9.8e-14 Score=112.09 Aligned_cols=124 Identities=17% Similarity=0.310 Sum_probs=94.6
Q ss_pred CCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHH
Q 020637 164 SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQ 243 (323)
Q Consensus 164 s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~ 243 (323)
|+++++++++.++.+|++.|.++++..+||+|+ .|+++|+|+..|++..+..... . ..... . +.
T Consensus 1 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~Giv~~~~l~~~~~~~~~--~----~~~~~-----~-~~--- 64 (124)
T cd04600 1 SRDVVTVTPDTSLEEAWALLRRHRIKALPVVDG-DRRLVGIVTQRDLLRHARPDGR--R----PLRGR-----L-RG--- 64 (124)
T ss_pred CCCcEEeCCCCCHHHHHHHHHHcCCceeeEECC-CCCEEEEEEHHHHHhhhccccc--c----hhhhh-----h-hc---
Confidence 467899999999999999999999999999985 5899999999999764431110 0 00000 0 00
Q ss_pred hhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 244 LNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 244 ~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
. .....++++|.+.++++.+++++.+|+.+|.+++++++||+|+ +| +++|+||++||+++
T Consensus 65 ~---~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~---~g---~~~Gvit~~di~~~ 124 (124)
T cd04600 65 R---DKPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDE---DR---RLVGIVTQTDLIAA 124 (124)
T ss_pred c---cccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcC---CC---CEEEEEEhHHhhcC
Confidence 0 0001122368889999999999999999999999999999984 35 79999999999875
No 18
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.53 E-value=2e-14 Score=141.37 Aligned_cols=120 Identities=20% Similarity=0.328 Sum_probs=102.4
Q ss_pred cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhH
Q 020637 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI 234 (323)
Q Consensus 155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i 234 (323)
..+.+++ ..+.+++++.+++++|.+.|.++|+.++.++|. .+...||||.+|+...+..-+.. .
T Consensus 149 trv~~~~--~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~-~~~~~GIvT~~dl~~~v~~~g~~---~---------- 212 (610)
T COG2905 149 TRVGEVK--TLPAVTVSPQASIQDAARKMKDEGVSSLVVLDD-SGPLLGIVTRKDLRSRVIADGRS---K---------- 212 (610)
T ss_pred HHHHHHh--cCCCcccCccCcHHHHHHHHHhcCCCeEEEEcC-CCCccceeehHHHHHHHHhcCCC---c----------
Confidence 4677888 578899999999999999999999999999995 78999999999997755432210 0
Q ss_pred HHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
...++++|+.|+++|.+.+-++||+.+|++++||||||.++ | +++||||.+|||+.
T Consensus 213 ---------------~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e~----g---q~~Gilt~~dIl~l 268 (610)
T COG2905 213 ---------------TQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTED----G---QPLGILTLTDILRL 268 (610)
T ss_pred ---------------ccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeecC----C---eeeEEeeHHHHHHh
Confidence 01133479999999999999999999999999999999974 6 89999999999998
No 19
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.51 E-value=4.1e-13 Score=106.22 Aligned_cols=112 Identities=21% Similarity=0.389 Sum_probs=91.1
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~ 245 (323)
++++++++.++.+|.+.|.++++..+||+|+ .++++|+++..|+++.+........ .. .+.
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~Giv~~~~l~~~~~~~~~~~~--------~~---~~~------- 62 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDD-GGRLVGIFSERDIVRKVALRGASAL--------DT---PVS------- 62 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECC-CCCEEEEEehHHHHHHHhhcCCCcc--------cc---CHH-------
Confidence 5678899999999999999999999999995 5899999999999765532111000 00 011
Q ss_pred cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
++|..++.++.+++++.+++.+|.+++.+++||+|+ | +++|+||.+||+++
T Consensus 63 ---------~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~----~---~~~Gvit~~di~~~ 113 (113)
T cd04623 63 ---------EIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG----G---KLVGIVSIGDVVKA 113 (113)
T ss_pred ---------HhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC----C---EEEEEEEHHHhhcC
Confidence 257778999999999999999999999999999983 4 79999999999875
No 20
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.51 E-value=4.5e-13 Score=107.05 Aligned_cols=114 Identities=18% Similarity=0.283 Sum_probs=90.9
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~ 245 (323)
++.++++++++.+|++.|.+.++..+||.|+ .++++|+++..|+.+.+........ ..+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~~~~~~------------~~~~------- 61 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDR-DGGVVGIITLPDLLRALEADEAGEP------------SAVD------- 61 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcC-CCCEEEEEEHHHHHHHHhccccccc------------ccHH-------
Confidence 4568889999999999999999999999995 6899999999999765432110000 0011
Q ss_pred cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
++|..+++++.+++++.+|+.+|.+++.+++||+|+. ..| +++|+||.+||+++
T Consensus 62 ---------~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~-~~~---~~~Gvit~~di~~~ 115 (115)
T cd04593 62 ---------EVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRG-NPG---QVLGLLTRENVLLA 115 (115)
T ss_pred ---------HhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCC-CCC---eEEEEEEhHHhhcC
Confidence 1477889999999999999999999999999999851 114 79999999999875
No 21
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.50 E-value=1.5e-13 Score=130.51 Aligned_cols=123 Identities=16% Similarity=0.230 Sum_probs=100.8
Q ss_pred ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhh
Q 020637 154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT 233 (323)
Q Consensus 154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~ 233 (323)
..++.|+|-.++.++++.+++++.+|++.|.+++...+||+|+ +|+++|+||..|+.+.+..- . .. .
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~-~g~~iG~vt~~dl~~~~~~~-~---~~-----~--- 262 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDA-QQQVQGVFTDGDLRRWLVGG-G---AL-----T--- 262 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEecHHHHHHHHhCC-C---Cc-----C---
Confidence 6789999943323999999999999999999999999999995 78999999999987644311 0 00 0
Q ss_pred HHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 234 i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
..+. ++|+++++++.+++++.+|+.+|.++++.++||+|+ +| +++|+||+.||+++
T Consensus 263 -~~v~----------------~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~~---~lvGvIt~~di~~~ 318 (321)
T PRK11543 263 -TPVN----------------EAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDE---NG---KLTGAINLQDFYQA 318 (321)
T ss_pred -CcHH----------------HhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEHHHHHhc
Confidence 0011 258889999999999999999999999999999985 34 79999999999975
No 22
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.50 E-value=4e-13 Score=107.00 Aligned_cols=110 Identities=21% Similarity=0.294 Sum_probs=89.4
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~ 245 (323)
+.++++.+.++.+|++.|.+++++.+||.|+ +++++|++|..|++..+..... . . ..+.+
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~~~~----~-----~----~~v~~------ 62 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDE-NGRLLGTVTDGDIRRALLKGLS----L-----D----DPVSE------ 62 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECC-CCCEEEEEEcHHHHHHHhcCCC----c-----C----CCHHH------
Confidence 4578899999999999999999999999985 6899999999999754431100 0 0 00111
Q ss_pred cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (323)
Q Consensus 246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~ 311 (323)
+|..++.++.+++++.+|+.+|.+++.+++||+|+ .| +++|+||.+||+.
T Consensus 63 ----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvit~~di~~ 112 (113)
T cd04607 63 ----------VMNRNPITAKVGSSREEILALMRERSIRHLPILDE---EG---RVVGLATLDDLLS 112 (113)
T ss_pred ----------hhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECC---CC---CEEEEEEhHHhcc
Confidence 46778899999999999999999999999999985 35 7999999999975
No 23
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.50 E-value=1.1e-13 Score=113.32 Aligned_cols=112 Identities=13% Similarity=0.205 Sum_probs=89.7
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~ 245 (323)
+++++.++.++.+|++.|.++++..+||+|+ +++++|++|..|++..+..-.....
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~-~~~~~Gii~~~dl~~~~~~~~~~~~----------------------- 58 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDE-SGKILGMVTLGNLLSSLSSGKVQPS----------------------- 58 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHHHHHHhccCCC-----------------------
Confidence 5788999999999999999999999999995 6899999999999765442111000
Q ss_pred cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHH---------HcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKIL---------QNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~---------~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
..+.++|.++++++.+++++.+++++|. +.+.+++||+|+ +| +++||||.+||+++
T Consensus 59 -----~~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~Givt~~Dl~~~ 123 (124)
T cd04608 59 -----DPVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEK---QE---KPIGIVTKIDLLSY 123 (124)
T ss_pred -----CcHHHHhhccceecCCCCCHHHHHhhcccCCceEEEecccccccccccc---cc---ceEEEEehhHhhhh
Confidence 0012368999999999999999999653 447899999984 35 89999999999975
No 24
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.50 E-value=1.3e-13 Score=115.69 Aligned_cols=120 Identities=16% Similarity=0.330 Sum_probs=95.4
Q ss_pred cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhh
Q 020637 153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH 232 (323)
Q Consensus 153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~ 232 (323)
...+|..+| +++|+.+.++.++.+|+++|.++|++-+||+++ +++||-+|+.|+++.+..-. +++..+
T Consensus 63 ~~ita~~iM--~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~--~k~VGsItE~~iv~~~le~~--------e~i~~~ 130 (187)
T COG3620 63 TRITAKTIM--HSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE--DKVVGSITENDIVRALLEGM--------ESIRSL 130 (187)
T ss_pred ceEeHhhhc--cCCeeEECchhhHHHHHHHHHHcCCccCceeeC--CeeeeeecHHHHHHHHhccc--------cchhhh
Confidence 568999999 789999999999999999999999999999984 79999999999988665321 111110
Q ss_pred hHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 233 ~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
.++ ++|..++.+|+|+++|...-.++- + ...+-|+++ | +++||||+.||++.
T Consensus 131 ---~vr----------------~vM~e~fP~Vs~~~~l~vI~~LL~-~-~~AVlV~e~----G---~~vGIITk~DI~k~ 182 (187)
T COG3620 131 ---RVR----------------EVMGEPFPTVSPDESLNVISQLLE-E-HPAVLVVEN----G---KVVGIITKADIMKL 182 (187)
T ss_pred ---hHH----------------HHhcCCCCcCCCCCCHHHHHHHHh-h-CCeEEEEeC----C---ceEEEEeHHHHHHH
Confidence 112 269999999999999966655554 3 356777763 5 79999999999986
No 25
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.50 E-value=2.3e-13 Score=112.26 Aligned_cols=132 Identities=20% Similarity=0.284 Sum_probs=94.4
Q ss_pred CCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhH--HHH-HHH
Q 020637 164 SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI--SAW-KVG 240 (323)
Q Consensus 164 s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i--~~~-~~~ 240 (323)
|..++++++++++.+|+++|.++++..+||+|+ .++++|+++..|+++.+....... ......... ... ...
T Consensus 1 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~~Gvi~~~dl~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 75 (135)
T cd04586 1 TTDVVTVSPETSVAEAARLMLDNHISGLPVVDD-DGRLVGIVSEGDLLRRAELGTERR----RARWLDLLAGAEELAAAF 75 (135)
T ss_pred CCCCEEeCCCCCHHHHHHHHHHcCCCCceEECC-CCCEEEEeeHHHHHHHhcccCcch----hhhHHHHhcchHHHHHHH
Confidence 457889999999999999999999999999995 689999999999976443211000 000000000 000 000
Q ss_pred HHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 241 KLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 241 ~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
.. . ....+.++|.+++.++.+++++.+|+.+|.+++.+++||+|. | +++||||+.||+++
T Consensus 76 ~~-~----~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd~----g---~~~Gvit~~di~~~ 135 (135)
T cd04586 76 VR-S----HGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVRG----G---RLVGIVSRADLLRA 135 (135)
T ss_pred HH-h----cCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEecC----C---EEEEEEEhHhhhcC
Confidence 00 0 001122468888999999999999999999999999999973 5 79999999999875
No 26
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.50 E-value=4.8e-13 Score=109.06 Aligned_cols=126 Identities=18% Similarity=0.314 Sum_probs=92.5
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhc-CCCCCCChhhhhhhhHHHHHHHHHHh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELG-TNGSNLTEEELETHTISAWKVGKLQL 244 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~-~~~~~l~~~~l~~~~i~~~~~~~~~~ 244 (323)
+++++.+++++.+|+++|.++++..+||+|+ .++++|++|..|+...+.... .+. . ... ........+
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~dl~~~~~~~~~~~~--~--~~~-~~~~~~~~~----- 70 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDD-NGKLTGIVTRHDIVDFVVRDRDKAR--T--GDR-SGEKERMLD----- 70 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECC-CCcEEEEEEHHHHHHHHhhhhhhcc--h--hhh-hhhhhhhcc-----
Confidence 4678899999999999999999999999995 689999999999976543211 000 0 000 000000000
Q ss_pred hcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 245 ~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
..+.++|.++++++.+++++.+|+.+|.+++++.+||++.+ ++| +++|+||.+||+++
T Consensus 71 ------~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~-~~~---~~~Gvit~~di~~~ 128 (128)
T cd04632 71 ------LPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPD-DDT---KVVGILTKKDVLRA 128 (128)
T ss_pred ------CcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccC-CCC---cEEEEEEhHhhhcC
Confidence 00123688889999999999999999999999999999531 235 79999999999875
No 27
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.49 E-value=4.2e-13 Score=111.47 Aligned_cols=131 Identities=17% Similarity=0.229 Sum_probs=92.8
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~ 245 (323)
+++++..++++.+|++.|.++++..+||+|+ .++++|++|..|+++.+...... ...... +. +........
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~-~~~~~Giv~~~dl~~~~~~~~~~--~~~~~~---~~---~~~~~~~~~ 72 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDD-NGKPVGVITYRDLAFAEFEDNER--GLPKKS---IK---MKRKAGQKR 72 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECC-CCCEEEEEeHHHHHHHhhccccc--ccchhh---hh---hhhhccccc
Confidence 4577899999999999999999999999995 78999999999998655321110 000000 00 000000000
Q ss_pred c---ccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 246 L---KRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 246 ~---~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
. ......+.++|..++.++.+++++.+|+..|.+++++++||+|+ | +++|+||++||+++
T Consensus 73 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~----~---~~~Gvit~~di~~~ 135 (135)
T cd04621 73 YRYVKEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN----D---NIVGVITKTDICRE 135 (135)
T ss_pred ccccccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC----C---EEEEEEEHHHHhhC
Confidence 0 00001123468889999999999999999999999999999983 5 79999999999874
No 28
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.49 E-value=9.3e-13 Score=104.40 Aligned_cols=110 Identities=18% Similarity=0.279 Sum_probs=89.2
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~ 245 (323)
+.+++..+.++.+|.+.|.+++...+||.|+ ++++|+++..|++..+........ ..+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~------------~~i~------- 60 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGLPSS------------TPVG------- 60 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCCCCC------------CCHH-------
Confidence 5678899999999999999999999999984 789999999999764421100000 0011
Q ss_pred cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
++|.+++.++.+++++.+++.+|.+++.+++||+|+ | +++|+||..|+++|
T Consensus 61 ---------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~---~~~G~it~~dl~~~ 111 (111)
T cd04589 61 ---------EIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG----G---EVVGVLEQTDLLSF 111 (111)
T ss_pred ---------HHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC----C---EEEEEEEhHHhhcC
Confidence 147778999999999999999999999999999983 4 79999999999976
No 29
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.49 E-value=4.3e-13 Score=106.88 Aligned_cols=115 Identities=19% Similarity=0.303 Sum_probs=88.6
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~ 245 (323)
+++++..++++.+|++.|.++++..+||+|+ .++++|+++..|+++.+..... .+... ....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~~~~~~-------~~~~~-----~~~~----- 63 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK-EGKYVGTISLTDILWKLKGLEN-------LDLER-----LVDL----- 63 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECC-CCcEEEEEeHHHHHHHhhccCc-------hhHHH-----HhCC-----
Confidence 5788999999999999999999999999995 6899999999999764421100 00000 0000
Q ss_pred cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
.+.++|.+++.++.+++++.+|+.+|.+++ .+||+|+ +| +++|+||+.||+++
T Consensus 64 ------~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~---~~---~~~Gvit~~dil~~ 116 (116)
T cd04643 64 ------KVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDD---DG---IFIGIITRREILKA 116 (116)
T ss_pred ------cHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeC---CC---eEEEEEEHHHhhcC
Confidence 011257888999999999999999998865 5999985 35 89999999999875
No 30
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.47 E-value=1.2e-12 Score=103.46 Aligned_cols=108 Identities=19% Similarity=0.385 Sum_probs=90.4
Q ss_pred CCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHh
Q 020637 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL 244 (323)
Q Consensus 165 ~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~ 244 (323)
++++++.++.++.+|++.|.+++...+||.|+ .|+++|++|..|+++.+.... . .+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~~---~-------------~~~~----- 59 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDE-DGRLVGIVTSWDISKAVARDK---K-------------SVED----- 59 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECC-CCcEEEEEeHHHHHHHHhhCc---c-------------CHHH-----
Confidence 57788999999999999999999999999985 689999999999965442100 0 0111
Q ss_pred hcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637 245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (323)
Q Consensus 245 ~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~ 311 (323)
+|.+++.++.+++++.+|+++|.+++.+.+||+|+ +| +++|+||+.||++
T Consensus 60 -----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~---~~~G~v~~~di~~ 109 (110)
T cd04605 60 -----------IMTRNVITATPDEPIDVAARKMERHNISALPVVDA---EN---RVIGIITSEDISK 109 (110)
T ss_pred -----------hcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECC---CC---cEEEEEEHHHhhh
Confidence 46778899999999999999999999999999985 35 7999999999975
No 31
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.47 E-value=1e-12 Score=104.84 Aligned_cols=109 Identities=17% Similarity=0.248 Sum_probs=86.0
Q ss_pred CeEEEecchhHHHHHHHHHHCC-CCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQG-LPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL 244 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~-i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~ 244 (323)
++.++.+++++.+|++.|.+++ +..+||+|+ .++++|++|..|++........ . . .+.+
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~~~-~----------~---~v~~----- 61 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDN-EGRYVGIISLADLRAIPTSQWA-Q----------T---TVIQ----- 61 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcC-CCcEEEEEEHHHHHHHHHhhcc-c----------c---chhh-----
Confidence 5678899999999999998775 899999985 6899999999998754321100 0 0 0111
Q ss_pred hcccccCCCCCCCC--CCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637 245 NLKRQMDGNGRPCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (323)
Q Consensus 245 ~~~~~~~~~~~im~--~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~ 311 (323)
+|. .++.++.+++++.+|+..|.+++.+++||+|+ +| +++||||..||++
T Consensus 62 -----------~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~---~~---~~~Gvl~~~di~~ 113 (114)
T cd04801 62 -----------VMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVED---SG---QVIGLITEADLLR 113 (114)
T ss_pred -----------hhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcC---CC---cEEEEEeccceec
Confidence 343 23679999999999999999999999999985 34 7999999999986
No 32
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47 E-value=7.1e-13 Score=105.28 Aligned_cols=114 Identities=22% Similarity=0.345 Sum_probs=90.5
Q ss_pred CCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHh
Q 020637 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL 244 (323)
Q Consensus 165 ~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~ 244 (323)
++++++.++.++.+|.+.|.++++..+||+|+ .++++|+|+..|+++.+......... . ..+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~~~~~~-------~---~~v~------ 63 (114)
T cd04629 1 RNPVTFTPDMSVTEAVEKLLKSKISGGPVVDD-NGNLVGFLSEQDCLKQLLESSYHCDG-------V---ATVR------ 63 (114)
T ss_pred CCCeEeCCCCCHHHHHHHHHhcCCCCccEECC-CCeEEEEeehHHHHHHhhhhhhccCC-------C---ccHH------
Confidence 35678999999999999999999999999995 68999999999997644321000000 0 0011
Q ss_pred hcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 245 ~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
++|..++.++.+++++.+|+.+|.+++.+++||+|+ | +++|+||..||+++
T Consensus 64 ----------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~---~~~Gvit~~di~~~ 114 (114)
T cd04629 64 ----------DIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD----G---KLVGQISRRDVLRA 114 (114)
T ss_pred ----------HHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC----C---EEEEEEEHHHHhcC
Confidence 146778899999999999999999999999999983 5 79999999999874
No 33
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.47 E-value=6.7e-13 Score=104.21 Aligned_cols=105 Identities=11% Similarity=0.150 Sum_probs=87.8
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~ 245 (323)
+++++.++.++.+|++.|.++++..+||+|+ +|+++|++|..|++.... + .+.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~-~g~~~Giv~~~dl~~~~~----~---------------~~~------- 54 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDA-DGQPLGFVTRREAARASG----G---------------CCG------- 54 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECC-CCCEEEEEeHHHHHHhcc----c---------------chh-------
Confidence 4678899999999999999999999999985 689999999999864210 0 011
Q ss_pred cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
++|.+.+..+.+++++.+|+.+|.++++..+||+|+ .| +++|+||.++++++
T Consensus 55 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvi~~~~l~~~ 106 (106)
T cd04582 55 ---------DHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDE---DG---RYVGEVTQRSIADY 106 (106)
T ss_pred ---------hhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECC---CC---cEEEEEEHHHhhcC
Confidence 146777788999999999999999999999999985 34 79999999999864
No 34
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.47 E-value=1.3e-12 Score=103.40 Aligned_cols=109 Identities=19% Similarity=0.308 Sum_probs=88.4
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~ 245 (323)
+++++..++++.+|++.|.++++..+||+|++.++++|++|..|+++.+.... . . ..+..
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~---~----~-------~~~~~------ 61 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGE---E----D-------LDLRD------ 61 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCC---C----c-------CCHHH------
Confidence 57889999999999999999999999999953389999999999976543110 0 0 00111
Q ss_pred cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (323)
Q Consensus 246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~ 311 (323)
+| +++.++.+++++.+|+.+|.+++.+++||+|+ .| +++|+||++||++
T Consensus 62 ----------~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvit~~di~~ 110 (111)
T cd04590 62 ----------LL-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDE---YG---GTAGLVTLEDILE 110 (111)
T ss_pred ----------Hh-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEEC---CC---CEEEEeEHHHhhc
Confidence 24 46789999999999999999999999999985 35 7999999999985
No 35
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47 E-value=1.1e-12 Score=103.91 Aligned_cols=110 Identities=22% Similarity=0.319 Sum_probs=90.1
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~ 245 (323)
+.+++++++++.+|.++|.+.+...+||+|+ +++++|+++..|+++.+..... + ..+.+
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~~-------~-------~~v~~------ 60 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDG-DGHLVGLLTRDDLIRALAEGGP-------D-------APVRG------ 60 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECC-CCcEEEEeeHHHHHHHHHhcCC-------C-------CcHHH------
Confidence 4577899999999999999999999999995 6899999999999765432110 0 00111
Q ss_pred cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
+|..+++++.+++++.+|+..|.+++.+++||+|+ + | +++|+||.+||+++
T Consensus 61 ----------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~--~-~---~~~G~it~~dl~~~ 111 (111)
T cd04639 61 ----------VMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDG--S-G---RLVGLVTLENVGEL 111 (111)
T ss_pred ----------HhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcC--C-C---CEEEEEEHHHhhcC
Confidence 46778899999999999999999999999999985 2 4 79999999999864
No 36
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.46 E-value=2e-12 Score=103.07 Aligned_cols=110 Identities=25% Similarity=0.484 Sum_probs=91.2
Q ss_pred CCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHh
Q 020637 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL 244 (323)
Q Consensus 165 ~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~ 244 (323)
..++++.++.++.+|+..|.++++.++||.+. .+++|++|.+|+++.+........ .
T Consensus 7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~--~~l~Giit~~di~~~~~~~~~~~~-------------~-------- 63 (117)
T COG0517 7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGKRLL-------------P-------- 63 (117)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccCCccc-------------c--------
Confidence 67899999999999999999999999999984 389999999999876543211000 0
Q ss_pred hcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHH-cCCCEEeEEecCCCCCCcccEEEEeeccccc
Q 020637 245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQ-NKVATVPIIHSTGPAGSCQEILYLASLSDIL 310 (323)
Q Consensus 245 ~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~-~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl 310 (323)
+..+|+.+++++.+++++.+++.+|.+ ++++++||+|+ +++ +++||+|.+||+
T Consensus 64 --------v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~--~~~---~lvGivt~~di~ 117 (117)
T COG0517 64 --------VKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDD--DGG---KLVGIITLSDIL 117 (117)
T ss_pred --------HHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEEC--CCC---eEEEEEEHHHcC
Confidence 112588899999999999999999999 79999999996 323 699999999985
No 37
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=8.4e-13 Score=108.43 Aligned_cols=129 Identities=16% Similarity=0.244 Sum_probs=93.7
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCC--CChhhhhhhhHHHHHHHHHH
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSN--LTEEELETHTISAWKVGKLQ 243 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~--l~~~~l~~~~i~~~~~~~~~ 243 (323)
+++++.+++++.+|++.|.++++..+||+|+ .++++|+++..|++..+......... .....+.. .+....
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~-~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 74 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDN-EGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLD------ESKIKK 74 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECC-CCCEEEEEeHHHHHHHHhccCCcccccccccccccc------hHHHHH
Confidence 4678899999999999999999999999995 68999999999998755422110000 00000000 001111
Q ss_pred hhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 244 LNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 244 ~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
+. . ..+.++|.++++.+.+++++.+|+.+|.+++.+++||+|+ | +++|+||++||++|
T Consensus 75 ~~--~--~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----~---~~iGvit~~dl~~~ 132 (132)
T cd04636 75 LL--G--KKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD----G---KLVGIISRGDIIRS 132 (132)
T ss_pred Hc--C--CCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC----C---EEEEEEEHHHhhcC
Confidence 10 0 0123468888999999999999999999999999999983 5 89999999999975
No 38
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.46 E-value=2.1e-12 Score=102.45 Aligned_cols=112 Identities=19% Similarity=0.297 Sum_probs=89.3
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~ 245 (323)
+++++.+++++.+|++.|.+++.+.+||.|. ++++|+||..|++..+..... .. . ... +.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~--~~---~---~~~---v~------- 61 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVAQGL--DP---E---STL---VE------- 61 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHhcCC--Cc---C---cCC---HH-------
Confidence 5788999999999999999999999999984 899999999999743321100 00 0 000 11
Q ss_pred cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
++|..++.++.+++++.+++.+|.+++.+++||+|+ + | +++|+||..||+.+
T Consensus 62 ---------~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~--~-~---~~~Gvvs~~dl~~~ 113 (113)
T cd04587 62 ---------RVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDK--S-G---QVVGLLDVTKLTHA 113 (113)
T ss_pred ---------HhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECC--C-C---CEEEEEEHHHhccC
Confidence 157788899999999999999999999999999985 2 4 79999999999864
No 39
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=1.3e-12 Score=105.11 Aligned_cols=121 Identities=20% Similarity=0.304 Sum_probs=91.9
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~ 245 (323)
+++++++++++.+|+++|.+.++..+||+|. .|+++|++|..|++..+...... .. ... +... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~~~--~~--~~~-------~~~~-~--- 65 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNE-DGKLVGLLTQRDLLRAALSSLSD--NG--EES-------LTKE-R--- 65 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECC-CCCEEEEEEHHHHHHHhcccccc--cc--ccc-------cccc-c---
Confidence 5678999999999999999999999999985 68999999999997644321110 00 000 0000 0
Q ss_pred cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
...+.++|..+++++.+++++.+++.+|.+++.+++||+|+ .| +++|+||..||+++
T Consensus 66 ----~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvit~~dl~~~ 122 (122)
T cd04803 66 ----DVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDD---KG---TLVGIITRSDFLRL 122 (122)
T ss_pred ----CcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcC---CC---CEEEEEEHHHhhcC
Confidence 00011257788999999999999999999999999999985 35 79999999999875
No 40
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=1.6e-12 Score=103.05 Aligned_cols=109 Identities=13% Similarity=0.231 Sum_probs=88.9
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~ 245 (323)
++++++.++++.+|++.|.++++..+||+|+ .|+++|+++..|++....... .. . ..+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~~~----~~------~---~~v~------- 60 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDN-EEKLKGVVTFTDILDLDLFES----FL------E---KKVF------- 60 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcC-CCCEEEEEehHHhHHHHhhcc----cc------c---CcHH-------
Confidence 5678999999999999999999999999985 689999999999865332100 00 0 0011
Q ss_pred cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (323)
Q Consensus 246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~ 311 (323)
++|.+++.++.+++++.+|+..|.+++++++||+|+ | +++|+||..||+.
T Consensus 61 ---------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~---~~~G~it~~di~~ 110 (111)
T cd04626 61 ---------NIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD----N---KLIGVVRTKDILD 110 (111)
T ss_pred ---------HHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC----C---EEEEEEEhHHhcc
Confidence 147788999999999999999999999999999983 5 7999999999975
No 41
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=2.3e-12 Score=102.19 Aligned_cols=111 Identities=19% Similarity=0.341 Sum_probs=87.2
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~ 245 (323)
.+.++.++.++.+|.+.|.+++...++|.+ +++++|++|..|+++.+...... . ... .+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~G~v~~~dl~~~~~~~~~~---~-----~~~---~v~------- 61 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME--RGELVGLLTFREVLQAMAQHGAG---V-----LDT---TVR------- 61 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee--CCEEEEEEEHHHHHHHHHhcCCc---h-----hcC---CHH-------
Confidence 467889999999999999999988777775 48999999999997654321000 0 000 011
Q ss_pred cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
++|..++.++.+++++.+|+.+|.+++.+++||+|+ | +++|+||.+||+++
T Consensus 62 ---------~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~----~---~~~Gvvt~~dl~~~ 112 (112)
T cd04625 62 ---------AIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLDG----G---TLLGVISFHDVAKA 112 (112)
T ss_pred ---------HHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEEC----C---EEEEEEEHHHhhcC
Confidence 247777889999999999999999999999999983 4 89999999999874
No 42
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=2.9e-12 Score=103.24 Aligned_cols=121 Identities=15% Similarity=0.333 Sum_probs=92.4
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~ 245 (323)
+++++.++.++.+|.+.|.++++..+||+|+ |+++|++|..|+.+.+....... . +.. .....+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~---~-~~~--~~~~~~~~~----- 68 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTA---G-ETE--KDLATLNRR----- 68 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccc---c-chH--HHHHHHHhH-----
Confidence 5788999999999999999999999999994 89999999999977554221100 0 000 000001010
Q ss_pred cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
+.++|..+++++.+++++.+++..|.+++.+++||+|+ +| +++|++|..|+++|
T Consensus 69 -------~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~---~~---~~~Gvit~~dll~~ 122 (122)
T cd04637 69 -------AHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDE---NG---QLIGIITWKDLLKY 122 (122)
T ss_pred -------HHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECC---CC---CEEEEEEHHHhhhC
Confidence 11257888999999999999999999999999999985 34 79999999999875
No 43
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=1.7e-12 Score=104.89 Aligned_cols=124 Identities=19% Similarity=0.324 Sum_probs=92.2
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~ 245 (323)
+++++.++.++.+|.++|.++++..+||+|+++++++|+|+..|++..+....... . ..... ..+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~-~---~~~~~-----~~~~~~--- 69 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFN-K---IKTGN-----GLEAIN--- 69 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhc-c---ccccc-----cchhhh---
Confidence 56788999999999999999999999999963389999999999976553211000 0 00000 000000
Q ss_pred cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
..+.++|..+++++.+++++.+++..|.+++.+++||+|+ +| +++|+||..||+++
T Consensus 70 -----~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~---~~---~~~Gvit~~di~~~ 125 (125)
T cd04631 70 -----EPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDD---DG---KLVGIVTERDLLKA 125 (125)
T ss_pred -----cCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcC---CC---cEEEEEEHHHhhcC
Confidence 0011256788999999999999999999999999999984 24 79999999999875
No 44
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.45 E-value=1.5e-12 Score=103.06 Aligned_cols=114 Identities=24% Similarity=0.334 Sum_probs=91.2
Q ss_pred CCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHh
Q 020637 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL 244 (323)
Q Consensus 165 ~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~ 244 (323)
++++++.+++++.+|.++|.++++..+||+|+ .++++|+++..|+...+.... ..+..+ +
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~G~v~~~~l~~~~~~~~---------~~~~~~---v------- 60 (114)
T cd04613 1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDD-DGRLVGIVSLDDIREILFDPS---------LYDLVV---A------- 60 (114)
T ss_pred CCceeeCCCCcHHHHHHHHHhCCCcceeEECC-CCCEEEEEEHHHHHHHHhccc---------ccccEE---H-------
Confidence 45788999999999999999999999999995 589999999999965432110 000000 1
Q ss_pred hcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 245 ~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
.++|.+++.++.+++++.+++..|.+.+.+++||+|++ .+ +++|++|..||+++
T Consensus 61 ---------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~--~~---~~~Gvvt~~di~~~ 114 (114)
T cd04613 61 ---------SDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDD--PG---KLLGILSRSDLLSA 114 (114)
T ss_pred ---------HHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCC--CC---EEEEEEEhHHhhcC
Confidence 12578889999999999999999999999999999841 34 79999999999874
No 45
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.44 E-value=2.1e-12 Score=103.00 Aligned_cols=111 Identities=16% Similarity=0.287 Sum_probs=86.7
Q ss_pred CeEEEecchhHHHHHHHHHHCC-CCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQG-LPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL 244 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~-i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~ 244 (323)
++++++.+.++.+|++.|.+++ ...+||.| .++++|+|+..|++..+..-. ... . ..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~G~v~~~dl~~~~~~~~----~~~-----~---~~i~------ 61 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE--KGRLLGIFTERDIVRLTAIGK----DLS-----D---LPIG------ 61 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC--CCcEEEEEeHHHHHHHHhcCC----Ccc-----c---cCHH------
Confidence 4678899999999999999888 66777776 379999999999976443110 000 0 0011
Q ss_pred hcccccCCCCCCCCCCcEEeCCC--CCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 245 NLKRQMDGNGRPCPRPLVQAGPY--DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 245 ~~~~~~~~~~~im~~~~vtv~pd--~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
++|..+++++.++ +++.+|+.+|.+++.+++||+|+ + | +++||||+.||+++
T Consensus 62 ----------~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~--~-~---~~~Gvit~~dl~~~ 115 (115)
T cd04620 62 ----------EVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDD--Q-G---QLIGLVTAESIRQV 115 (115)
T ss_pred ----------HhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcC--C-C---CEEEEEEhHHhhcC
Confidence 1477788899988 79999999999999999999985 3 5 79999999999874
No 46
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.44 E-value=6.3e-13 Score=132.47 Aligned_cols=118 Identities=17% Similarity=0.194 Sum_probs=99.4
Q ss_pred ccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhh
Q 020637 152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET 231 (323)
Q Consensus 152 l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~ 231 (323)
++..++.++| ..+++++.+++++.+|+++|.++++.++||+|+ +++++|+||.+|+.. . . ..
T Consensus 86 l~~VKv~~iM--i~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~-~gklvGIVT~rDL~~----~-~-~~--------- 147 (479)
T PRK07807 86 VAWVKSRDLV--FDTPVTLSPDDTVGDALALLPKRAHGAVVVVDE-EGRPVGVVTEADCAG----V-D-RF--------- 147 (479)
T ss_pred Hhhccccccc--ccCCeEECCCCCHHHHHHHHHhcCCceEEEECC-CCeEEEEEeHHHHhc----C-c-cC---------
Confidence 3456667888 578999999999999999999999999999995 789999999999721 1 0 00
Q ss_pred hhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637 232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (323)
Q Consensus 232 ~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~ 311 (323)
..+. ++|+++++++.++++|.+|+.+|.++++++|||+|+ +| +++||||++||++
T Consensus 148 ---~~V~----------------diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~---~g---~lvGIIT~~DIl~ 202 (479)
T PRK07807 148 ---TQVR----------------DVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDA---DG---RLVGVLTRTGALR 202 (479)
T ss_pred ---CCHH----------------HhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcC---CC---eEEEEEEHHHHHH
Confidence 0011 258899999999999999999999999999999985 35 8999999999999
Q ss_pred c
Q 020637 312 C 312 (323)
Q Consensus 312 ~ 312 (323)
+
T Consensus 203 ~ 203 (479)
T PRK07807 203 A 203 (479)
T ss_pred H
Confidence 8
No 47
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=1.7e-12 Score=104.34 Aligned_cols=120 Identities=20% Similarity=0.380 Sum_probs=91.3
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~ 245 (323)
+++++++++++.+|++.|.++++..+||+|+ ++++|++|..|++..+...... .. .......+.+
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~--~~-----~~~~~~~~~~------ 66 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPL--VR-----DRHQERRIRN------ 66 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhhc--cc-----chhhhhhhhc------
Confidence 4678899999999999999999999999994 8999999999997654321110 00 0000000000
Q ss_pred cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
..+..+|..+++++.++++|.+|+.+|.+++++++||+|+ | +++|+||.+||+++
T Consensus 67 -----~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~---~~~Gvi~~~dl~~~ 121 (121)
T cd04633 67 -----LPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD----G---KLVGIVTRTDILRY 121 (121)
T ss_pred -----cCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC----C---EEEEEEEHHHhhcC
Confidence 0112257888999999999999999999999999999983 5 89999999999875
No 48
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.44 E-value=3.4e-12 Score=100.96 Aligned_cols=108 Identities=22% Similarity=0.378 Sum_probs=89.0
Q ss_pred CCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHh
Q 020637 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL 244 (323)
Q Consensus 165 ~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~ 244 (323)
+++++++.+.++.+|.+.|.+++...+||+|. ++++|+|+..|+...+.... . . . .+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~~~-~--~--------~---~~~------ 59 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHGL-G--H--------A---PVK------ 59 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhccc-c--c--------C---cHH------
Confidence 46789999999999999999999999999994 89999999999865332100 0 0 0 011
Q ss_pred hcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637 245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (323)
Q Consensus 245 ~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~ 311 (323)
++|..+++++.+++++.+|+.+|.+++.+.+||+|+ | +++|+||..||++
T Consensus 60 ----------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----~---~~~Gvvt~~di~~ 109 (110)
T cd04595 60 ----------DYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVED----G---RLVGIVTRTDLLR 109 (110)
T ss_pred ----------HHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEeC----C---EEEEEEEhHHhhc
Confidence 147778999999999999999999999999999983 4 7999999999986
No 49
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.44 E-value=7.2e-13 Score=135.50 Aligned_cols=130 Identities=17% Similarity=0.190 Sum_probs=105.2
Q ss_pred hhhhccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChh
Q 020637 148 ISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEE 227 (323)
Q Consensus 148 ~~~~l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~ 227 (323)
-++.++..++.|+| .++.+++++++++.+|.+.|.+++.+.+||+|+ +++++|+||..|+.+.+..... . .
T Consensus 440 ~~~~L~~~~V~dim--~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~-~g~lvGiVt~~dL~~~l~~~~~----~--~ 510 (574)
T PRK01862 440 ERERLRTTQMRELI--QPAQTVVPPTASVADMTRVFLEYPVKYLYVVDD-DGRFRGAVALKDITSDLLDKRD----T--T 510 (574)
T ss_pred hhhHHhhCcHHHHh--cCCCceeCCCCCHHHHHHHHHhCCCceEEEEcC-CCeEEEEEEHHHHHHHhhcccc----c--c
Confidence 34567788999999 567889999999999999999999999999995 7899999999999764431100 0 0
Q ss_pred hhhhhhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecc
Q 020637 228 ELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLS 307 (323)
Q Consensus 228 ~l~~~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~ 307 (323)
+ ... .++|.+++.++.+++++.+|+++|.+++++++||+|++ +++ +++|+||++
T Consensus 511 ~------~~v----------------~dim~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~-~~~---~liGvIt~~ 564 (574)
T PRK01862 511 D------KTA----------------ADYAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESE-ASP---TLAGVVYKT 564 (574)
T ss_pred c------chH----------------HHhccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCC-CCC---eEEEEEEHH
Confidence 0 001 12588889999999999999999999999999999862 223 799999999
Q ss_pred ccccc
Q 020637 308 DILKC 312 (323)
Q Consensus 308 dIl~~ 312 (323)
||+++
T Consensus 565 DIl~~ 569 (574)
T PRK01862 565 SLLDA 569 (574)
T ss_pred HHHHH
Confidence 99987
No 50
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.43 E-value=3.6e-12 Score=100.88 Aligned_cols=110 Identities=18% Similarity=0.335 Sum_probs=89.0
Q ss_pred CCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHh
Q 020637 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL 244 (323)
Q Consensus 165 ~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~ 244 (323)
+++++++.+.++.+|.+.|.+++++.+||.|+ ++++|+++..|++..+... . .. .. . .+.
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~--~---~~-~~---~---~i~------ 60 (111)
T cd04800 1 RPPVTCSPDTTIREAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAE--G---LD-PD---T---PVS------ 60 (111)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhcc--C---CC-cc---C---CHH------
Confidence 36788999999999999999999999999995 8999999999986533211 0 00 00 0 011
Q ss_pred hcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637 245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (323)
Q Consensus 245 ~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~ 311 (323)
++|..+++++.++++|.+|+.+|.+++.+++||+|+ | +++|+||.+||++
T Consensus 61 ----------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~---~~~Giit~~di~~ 110 (111)
T cd04800 61 ----------EVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD----G---RLVGVISATDLLR 110 (111)
T ss_pred ----------HHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC----C---EEEEEEEHHHhhc
Confidence 146778899999999999999999999999999983 4 7999999999986
No 51
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.43 E-value=1.4e-12 Score=103.04 Aligned_cols=106 Identities=20% Similarity=0.298 Sum_probs=88.4
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~ 245 (323)
++++++++.++.+|++.|.+++...+||+|+ .++++|+++..|++.. ... . .+.+
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~----~~~------~--------~v~~------ 57 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDE-KNKVVGIVTSKDVAGK----DPD------T--------TIEK------ 57 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECC-CCeEEEEecHHHHhcc----ccc------c--------cHHH------
Confidence 5678999999999999999999999999995 7899999999998521 000 0 0111
Q ss_pred cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
+|..++.++.+++++.+|+.+|.+++.+.+||+|+ +| +++|+||..||+++
T Consensus 58 ----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~---~~~G~it~~di~~~ 108 (108)
T cd04596 58 ----------VMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDD---NK---KLLGIISRQDVLKA 108 (108)
T ss_pred ----------HhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcC---CC---CEEEEEEHHHhhcC
Confidence 46777899999999999999999999999999985 35 79999999999864
No 52
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.43 E-value=4.1e-12 Score=100.34 Aligned_cols=108 Identities=17% Similarity=0.272 Sum_probs=89.0
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~ 245 (323)
+++++++++++.+|.+.|.++++..+||+|. ++++|+++..|+++....... . ..+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~~----~----------~~v~~------ 59 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGLE----L----------AKVKD------ 59 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhcccc----c----------cCHHH------
Confidence 5788999999999999999999999999994 799999999999764321100 0 01111
Q ss_pred cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (323)
Q Consensus 246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~ 311 (323)
+|..++.++.+++++.+++..|.+++++.+||+|+ .| +++|+||..||++
T Consensus 60 ----------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~i~~~dl~~ 109 (110)
T cd04588 60 ----------VMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDD---EG---RPVGIITRTDILR 109 (110)
T ss_pred ----------HhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECC---CC---CEEEEEEhHHhhc
Confidence 46778899999999999999999999999999985 24 7999999999986
No 53
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.43 E-value=4.8e-12 Score=100.27 Aligned_cols=111 Identities=18% Similarity=0.317 Sum_probs=88.9
Q ss_pred CCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHh
Q 020637 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL 244 (323)
Q Consensus 165 ~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~ 244 (323)
++++++.+++++.+|++.|.+++.+.+||+|+ ++++|+++..|++..+..-...... ..+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~-----------~~~~------ 61 (112)
T cd04802 1 KNVITVDPDTTVYEAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLKPRE-----------VPVG------ 61 (112)
T ss_pred CCcEEECCCCCHHHHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccCCccc-----------CCHH------
Confidence 46788999999999999999999999999995 3999999999997644311000000 0011
Q ss_pred hcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637 245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (323)
Q Consensus 245 ~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~ 311 (323)
++|..++.++.+++++.+++++|.+++.+++||+|+ + +++|+||.+||++
T Consensus 62 ----------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~---~~~Gvi~~~di~~ 111 (112)
T cd04802 62 ----------EVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDD----D---ELVGIVTTTDIVM 111 (112)
T ss_pred ----------HhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC----C---EEEEEEEhhhhhc
Confidence 147778899999999999999999999999999984 3 6999999999986
No 54
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.43 E-value=2.9e-12 Score=101.59 Aligned_cols=101 Identities=18% Similarity=0.235 Sum_probs=87.7
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCC--CCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHH
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQ 243 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~--~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~ 243 (323)
.+..+++++++.+|.+.|.++++..+||+|+. +++++|+|+..|+..... .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~-----------------------~---- 55 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALK-----------------------N---- 55 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHH-----------------------H----
Confidence 57788999999999999999999999999953 589999999999853221 0
Q ss_pred hhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 244 LNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 244 ~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
+|.+++.++.+++++.+++.+|.+++++++||+++ | +++|+||..||+++
T Consensus 56 ------------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~~----~---~~~Gvvt~~dl~~~ 105 (105)
T cd04591 56 ------------YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVDE----G---RLVGIITRKDLLKA 105 (105)
T ss_pred ------------hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEEC----C---eEEEEEEhhhhhcC
Confidence 26778889999999999999999999999999963 4 79999999999875
No 55
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.43 E-value=3.9e-12 Score=101.00 Aligned_cols=111 Identities=23% Similarity=0.404 Sum_probs=89.3
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~ 245 (323)
+..++.+++++.+|++.|.++++..+||+|+ .++++|++|..|++..+.... .+.... +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~-~~~~~G~v~~~dl~~~~~~~~---------~~~~~~---i-------- 60 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDD-KKRLVGIITRYDVLSYALESE---------ELKDAK---V-------- 60 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcC-CCCEEEEEEHHHHHHhhhhhh---------hhcCCc---H--------
Confidence 3578899999999999999999999999995 689999999999965332110 000000 1
Q ss_pred cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (323)
Q Consensus 246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~ 311 (323)
.++|..++.++.+++++.+++..|.+++.+++||+|+ +| +++|+||..||++
T Consensus 61 --------~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~---~g---~~~Gvvt~~dl~~ 112 (113)
T cd04615 61 --------REVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDD---KG---KVGGIVTEDDILR 112 (113)
T ss_pred --------HHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECC---CC---eEEEEEEHHHhhc
Confidence 1157788999999999999999999999999999985 35 7999999999985
No 56
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=1.8e-12 Score=105.68 Aligned_cols=116 Identities=15% Similarity=0.194 Sum_probs=85.2
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHH--HhhcCCCCCCChhhhhhhhHHHHHHHHHH
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL--RELGTNGSNLTEEELETHTISAWKVGKLQ 243 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l--~~~~~~~~~l~~~~l~~~~i~~~~~~~~~ 243 (323)
+++++..++++.+|++.|.++++..+||+|+ .++++|+++..|+...+ +........ +.+.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~~~~~-------------~~~~--- 64 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDS-DDNFIGVITAVDLLGEEPIKRIQEGGIS-------------RSEL--- 64 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcC-CCcEEEEEEHHHHhhChhhHHHHHcCCC-------------chhe---
Confidence 4678899999999999999999999999995 68999999999987521 111000000 0000
Q ss_pred hhcccccCCCCCCCCCCcEEe------CCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637 244 LNLKRQMDGNGRPCPRPLVQA------GPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (323)
Q Consensus 244 ~~~~~~~~~~~~im~~~~vtv------~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~ 311 (323)
.+.++|.+++..+ .+++++.+|+++|.+++++++||+|+ ++| +++|+||.+||++
T Consensus 65 --------~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~--~~~---~~~G~it~~di~~ 125 (126)
T cd04640 65 --------TVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDR--EHH---QIRGIISTSDIAR 125 (126)
T ss_pred --------EHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEEC--CCC---EEEEEEeHHHHhh
Confidence 0112466554333 37899999999999999999999985 224 7999999999985
No 57
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.42 E-value=2e-12 Score=129.61 Aligned_cols=132 Identities=20% Similarity=0.278 Sum_probs=100.2
Q ss_pred CCHHHHHHHHHhhhhhccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCC--CCeEEEEEehHHHHHH
Q 020637 136 YSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILI 213 (323)
Q Consensus 136 ~s~~~l~~~~~~~~~~l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~--~~~~vGilT~~D~i~~ 213 (323)
.+.+++......+.+++.. .++ ...++.+++++.+|+++|.++++..+||+|+. +++++||||..|+...
T Consensus 84 ~sie~qa~lV~kVk~~~~g----~i~----~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~ 155 (502)
T PRK07107 84 QSIESEAAMVRRVKNYKAG----FVV----SDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRIS 155 (502)
T ss_pred CCHHHHHHHHHHHHHHhcC----CcC----CCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhcc
Confidence 4455555555566665532 111 22588999999999999999999999999952 5899999999998421
Q ss_pred HHhhcCCCCCCChhhhhhhhHHHHHHHHHHhhcccccCCCCCCCCC--CcEEeCCCCCHHHHHHHHHHcCCCEEeEEecC
Q 020637 214 LRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHST 291 (323)
Q Consensus 214 l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~im~~--~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~ 291 (323)
.. .. + . .+. ++|++ +++++.+++++.+|+.+|.++++++|||+|+
T Consensus 156 ----~~---~~-----~-~---~V~----------------dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~- 202 (502)
T PRK07107 156 ----RM---SL-----D-T---KVK----------------DFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDK- 202 (502)
T ss_pred ----cc---CC-----C-C---CHH----------------HHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcC-
Confidence 00 00 0 0 011 25775 8899999999999999999999999999985
Q ss_pred CCCCCcccEEEEeecccccccc
Q 020637 292 GPAGSCQEILYLASLSDILKCK 313 (323)
Q Consensus 292 ~~~g~~~~lvGIIT~~dIl~~~ 313 (323)
++ +|+||||.+||++..
T Consensus 203 --~g---~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 203 --NG---NLVYLVFRKDYDSHK 219 (502)
T ss_pred --CC---eEEEEEEhHHHHhcc
Confidence 34 799999999999983
No 58
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.42 E-value=6.9e-12 Score=124.64 Aligned_cols=115 Identities=15% Similarity=0.300 Sum_probs=94.9
Q ss_pred cccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCC--CeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhH
Q 020637 157 VYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFK--GRFVGVLSALDFILILRELGTNGSNLTEEELETHTI 234 (323)
Q Consensus 157 ~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~--~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i 234 (323)
..++| .+++++++++.++.+|+++|.+++++.+||+|++. ++++|+||.+|++... . . ..
T Consensus 82 ~~~~~--~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~----~-~-~~---------- 143 (450)
T TIGR01302 82 AENGI--ISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK----D-K-GK---------- 143 (450)
T ss_pred ccCce--ecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh----c-C-CC----------
Confidence 44556 46899999999999999999999999999999632 7999999999985311 0 0 00
Q ss_pred HHHHHHHHHhhcccccCCCCCCCC-CCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 235 SAWKVGKLQLNLKRQMDGNGRPCP-RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~im~-~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
.+.+ +|+ .+++++.++++|.+|+.+|.+++++.+||+|+ .| +++|+||..||++.
T Consensus 144 -~V~d----------------vm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe---~G---~lvGiVT~~DIl~~ 199 (450)
T TIGR01302 144 -PVSE----------------VMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDK---NG---ELVGLITMKDIVKR 199 (450)
T ss_pred -CHHH----------------hhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcC---CC---cEEEEEEhHHhhhc
Confidence 0111 477 58999999999999999999999999999995 35 79999999999988
No 59
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.42 E-value=4.5e-12 Score=99.67 Aligned_cols=106 Identities=13% Similarity=0.264 Sum_probs=88.2
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~ 245 (323)
++++++++.++.+|++.|.++++..+||+|+ .++++|+|+..|++.... . .. .+.
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~---~-~~-------------~v~------- 57 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDK-DNKLLGIVSLESLEQAYK---E-AK-------------SLE------- 57 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcC-CCcEEEEEEHHHHHHHhh---c-CC-------------cHh-------
Confidence 5678899999999999999999999999985 689999999999864321 0 00 011
Q ss_pred cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (323)
Q Consensus 246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~ 311 (323)
++|...+.++.+++++.+|+..|.+++.+++||+|+ +| +++|+||.+|+++
T Consensus 58 ---------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~---~g---~~~Gvit~~~l~~ 108 (109)
T cd04583 58 ---------DIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDE---DG---KLVGLITRSSLVD 108 (109)
T ss_pred ---------HhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECC---CC---eEEEEEehHHhhc
Confidence 146778899999999999999999999999999985 35 7999999999986
No 60
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.42 E-value=1.7e-12 Score=121.98 Aligned_cols=124 Identities=15% Similarity=0.262 Sum_probs=101.1
Q ss_pred ccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhh
Q 020637 152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET 231 (323)
Q Consensus 152 l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~ 231 (323)
|...++.|+|..-.++++++.++++.++++.+.+++.+.+||++++.++++|+|+..|++..+.. .....
T Consensus 64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~---~~~~~------- 133 (292)
T PRK15094 64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS---DAEAF------- 133 (292)
T ss_pred cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhc---cCCcC-------
Confidence 57889999995434799999999999999999999999999998644799999999999754321 00000
Q ss_pred hhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637 232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (323)
Q Consensus 232 ~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~ 311 (323)
.+.+ +|+. ++++.++++|.+|+..|.+++.|.+||+|+ . | .++||||..||++
T Consensus 134 ----~l~~----------------l~r~-~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe--~-G---~viGiVTleDIle 186 (292)
T PRK15094 134 ----SMDK----------------VLRQ-AVVVPESKRVDRMLKEFRSQRYHMAIVIDE--F-G---GVSGLVTIEDILE 186 (292)
T ss_pred ----CHHH----------------HcCC-CcCcCCCCcHHHHHHHHHhcCCEEEEEEeC--C-C---CEEEEeEHHHHHH
Confidence 0111 4655 458999999999999999999999999995 3 4 6999999999999
Q ss_pred c
Q 020637 312 C 312 (323)
Q Consensus 312 ~ 312 (323)
.
T Consensus 187 ~ 187 (292)
T PRK15094 187 L 187 (292)
T ss_pred H
Confidence 8
No 61
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.41 E-value=3.2e-12 Score=102.86 Aligned_cols=121 Identities=15% Similarity=0.323 Sum_probs=91.2
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~ 245 (323)
+++++.+++++.+|++.|.++++..+||+|. .++++|+++..|+++... ... .. ++.... .....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~---~~~-~~--~~~~~~--~~~~~------ 66 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQK-AGELIGIITRRDIIRAGS---VRT-SV--EDQQRT--QTKAS------ 66 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECC-CCcEEEEEEcHHHHhhcc---ccc-cc--cchhhh--hhhcc------
Confidence 5788999999999999999999999999985 789999999999965321 000 00 000000 00000
Q ss_pred cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
..+.++|.++++++.+++++.+++..|.+++.+++||+|+ + | +++|+||..||+++
T Consensus 67 -----~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~--~-g---~~~Gvit~~dl~~~ 122 (122)
T cd04635 67 -----PTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNE--K-D---QLVGIVDRHDVLKA 122 (122)
T ss_pred -----CcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcC--C-C---cEEEEEEhHHhhcC
Confidence 0011257888999999999999999999999999999985 3 5 89999999999875
No 62
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.41 E-value=6.6e-12 Score=99.51 Aligned_cols=113 Identities=18% Similarity=0.357 Sum_probs=89.2
Q ss_pred CCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHh
Q 020637 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL 244 (323)
Q Consensus 165 ~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~ 244 (323)
++++++++++++.+|++.|.+++...+||+|+ ++++|+++..|++..+.. ... .. ... .+.
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~--~~~-~~-----~~~---~~~------ 61 (113)
T cd04622 1 RDVVTVSPDDTIREAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVA--EGR-DP-----DTT---TVG------ 61 (113)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhh--ccC-Cc-----ccC---CHH------
Confidence 35788999999999999999999999999984 899999999998622111 000 00 000 011
Q ss_pred hcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 245 ~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
++|...+.++.+++++.+++..|.+++.+++||+|+ +| +++|+||..|++++
T Consensus 62 ----------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~it~~di~~~ 113 (113)
T cd04622 62 ----------DVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDD---DG---RLVGIVSLGDLARA 113 (113)
T ss_pred ----------HhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECC---CC---cEEEEEEHHHhhcC
Confidence 147778899999999999999999999999999985 24 79999999999874
No 63
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.41 E-value=5.5e-12 Score=99.94 Aligned_cols=110 Identities=19% Similarity=0.324 Sum_probs=89.8
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~ 245 (323)
++.++..+.++.+|.+.|.++++..+||.|+ +++++|+||..|++..+..... . . ..+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~~l~~~~~~~~~----~-----~----~~v~------- 60 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDP-DERPIGIVTERDIVRAVAAGID----L-----D----TPVS------- 60 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECC-CCCEEEEeeHHHHHHHHhccCC----C-----c----cCHH-------
Confidence 4678899999999999999999999999995 6899999999999764432110 0 0 0011
Q ss_pred cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (323)
Q Consensus 246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~ 311 (323)
++|..++.++.+++++.+++.+|.+++++.+||+|+ + | +++|+||.+||++
T Consensus 61 ---------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~--~-g---~~~Gilt~~dl~~ 111 (112)
T cd04624 61 ---------EIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDK--G-G---ELVGVISIRDLVR 111 (112)
T ss_pred ---------HhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcC--C-C---cEEEEEEHHHhcc
Confidence 146778999999999999999999999999999985 3 5 7999999999986
No 64
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.40 E-value=4.9e-12 Score=101.18 Aligned_cols=121 Identities=20% Similarity=0.325 Sum_probs=91.5
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~ 245 (323)
++++++.+.++.+|++.|.++++..+||+|. ++++|+++..|+...+..... .....+.. .... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~---~~~~~~~~-----~~~~---~-- 66 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKAT---TLDIWELY-----YLLS---K-- 66 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhcccc---cccchhhh-----hhhc---c--
Confidence 5678999999999999999999999999994 899999999999764431110 00000000 0000 0
Q ss_pred cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
..+.++|.++++++.+++++.+++..|.+++.+++||+|+ + | +++|+||..||+++
T Consensus 67 -----~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~-~---~~~Gvvt~~di~~~ 122 (122)
T cd04585 67 -----IKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDD--Q-G---RLVGIITESDLFRA 122 (122)
T ss_pred -----cCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECC--C-C---cEEEEEEHHHhhhC
Confidence 0012367888999999999999999999999999999985 3 5 79999999999874
No 65
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.40 E-value=6.3e-12 Score=99.17 Aligned_cols=110 Identities=23% Similarity=0.428 Sum_probs=89.5
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~ 245 (323)
+.+++++++++.+|++.|.+.+++.+||+|. ++++|+++..|+....... . . .. . ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~----~-~--~~---~---~~-------- 58 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEG----R-E--AT---V---LV-------- 58 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcC----c-c--cc---c---CH--------
Confidence 5678999999999999999999999999994 8999999999986533210 0 0 00 0 00
Q ss_pred cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
.+.|..++.++.+++++.+++..|.+++.+++||+|+ + | +++|+||..||+++
T Consensus 59 --------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~-~---~~~G~it~~di~~~ 111 (111)
T cd04612 59 --------GDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDD--S-G---RLVGIVSRSDLLRA 111 (111)
T ss_pred --------HHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcC--C-C---CEEEEEEHHHhhhC
Confidence 1147888999999999999999999999999999985 2 4 79999999999875
No 66
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.39 E-value=4e-12 Score=100.01 Aligned_cols=101 Identities=18% Similarity=0.207 Sum_probs=84.8
Q ss_pred EEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhhcc
Q 020637 168 TALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLK 247 (323)
Q Consensus 168 v~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~ 247 (323)
+++.++.++.+|++.|.++++..+||+| + ++++|+++..|+++.. . . .+.+
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d-~-~~~~G~v~~~~l~~~~----~--~-------------~~~~-------- 54 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVD-Y-NKFLGAVYLKDIENAT----Y--G-------------DVVD-------- 54 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEE-C-CEEEEEEEHHHHhhhc----c--c-------------chhh--------
Confidence 6788999999999999999999999999 4 8999999999985310 0 0 0111
Q ss_pred cccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 248 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 248 ~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
+|...+.++.+++++.+|+..|.+++.+++||+|+ | +++|+||+.||+++
T Consensus 55 --------~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~----~---~~iGvit~~dl~~~ 104 (104)
T cd04594 55 --------YIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVDD----G---KFKGIVTLDSILDA 104 (104)
T ss_pred --------hhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEEC----C---EEEEEEEHHHhhcC
Confidence 36677889999999999999999999999999973 4 79999999999864
No 67
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.39 E-value=5.4e-12 Score=100.01 Aligned_cols=112 Identities=20% Similarity=0.292 Sum_probs=89.5
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~ 245 (323)
++.++.++.++.+|.+.|.+.+.+.+||+|+ .++++|+|+..|+.+.+..... . .... +
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~~i~~~~~~~~~----~-----~~~~---v-------- 61 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDE-DGRLVGIFTDGDLRRALEKGLD----I-----LTLP---V-------- 61 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcC-CCCEEEEechHHHHHHHhccCc----c-----ccCC---H--------
Confidence 3566788999999999999999999999995 6899999999998765542110 0 0000 1
Q ss_pred cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
+++|..++.++.+++++.+++++|.+++.+++||+|+ + | +++|+||..||+++
T Consensus 62 --------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~--~-~---~~iG~it~~di~~~ 114 (114)
T cd04604 62 --------ADVMTRNPKTIDPDALAAEALELMEENKITALPVVDD--N-G---RPVGVLHIHDLLRA 114 (114)
T ss_pred --------HHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECC--C-C---CEEEEEEHHHhhcC
Confidence 1246777889999999999999999999999999985 3 4 79999999999874
No 68
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.39 E-value=8.3e-12 Score=98.47 Aligned_cols=109 Identities=18% Similarity=0.277 Sum_probs=88.7
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~ 245 (323)
++.++++++++.+|++.|.++++..+||.|+ ++++|+++..|+++.+..... . .. .+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~~-~---------~~---~v~------- 59 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGPD-L---------QT---PVG------- 59 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCCC-C---------Cc---CHH-------
Confidence 5678899999999999999999999999984 799999999999754421100 0 00 011
Q ss_pred cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (323)
Q Consensus 246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~ 311 (323)
++|.++++++.+++++.+++..|.+++.+++||+|+ + | +++|+||.+||++
T Consensus 60 ---------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~--~-~---~~~Gvi~~~di~~ 110 (111)
T cd04611 60 ---------EVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDD--D-G---ELLGLLSQTDLLQ 110 (111)
T ss_pred ---------HhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECC--C-C---cEEEEEEhHHhhc
Confidence 147778999999999999999999999999999985 3 4 7999999999986
No 69
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.37 E-value=7.1e-12 Score=125.78 Aligned_cols=115 Identities=14% Similarity=0.211 Sum_probs=94.0
Q ss_pred CCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCC--CCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHH
Q 020637 164 SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGK 241 (323)
Q Consensus 164 s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~--~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~ 241 (323)
.++++++.++++|.+|+++|.++++..+||+|+. .++++|+||..|+... . ... ..+.
T Consensus 107 i~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v-~---~~~-------------~~V~--- 166 (505)
T PLN02274 107 VSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFV-N---DRE-------------TKLS--- 166 (505)
T ss_pred cCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhc-c---ccC-------------CcHH---
Confidence 4789999999999999999999999999999853 3799999999998421 1 000 0011
Q ss_pred HHhhcccccCCCCCCCCCC--cEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccccccCc
Q 020637 242 LQLNLKRQMDGNGRPCPRP--LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCKHFLH 317 (323)
Q Consensus 242 ~~~~~~~~~~~~~~im~~~--~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~~~f~~ 317 (323)
++|++. ++++.+++++.+|+.+|.++++++|||+|+ + + +|+||||++||+++..|++
T Consensus 167 -------------eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~--~-g---~LvGvITr~DIlk~~~~p~ 225 (505)
T PLN02274 167 -------------EVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE--D-G---ELVDLVTRTDVKRVKGYPK 225 (505)
T ss_pred -------------HHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC--C-C---eEEEEEEHHHHHHHhhCcC
Confidence 257766 899999999999999999999999999985 3 4 7999999999999944433
No 70
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.37 E-value=8.7e-12 Score=97.52 Aligned_cols=103 Identities=17% Similarity=0.251 Sum_probs=86.0
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~ 245 (323)
+++++..++++.+|++.|.++++..+||+| + ++++|++|..|++.. ... . .+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~-~~~~Giv~~~~l~~~----~~~-~-------------~~~~------ 55 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-D-GKLVGIITSRDVRRA----HPN-R-------------LVAD------ 55 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEehHHhhcc----ccc-C-------------CHHH------
Confidence 567889999999999999999999999998 3 799999999998531 000 0 0111
Q ss_pred cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (323)
Q Consensus 246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~ 311 (323)
+|..++.++.+++++.+|+.+|.+++..++||+|+ | +++|+||..||+.
T Consensus 56 ----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~---~~~G~it~~~l~~ 104 (105)
T cd04599 56 ----------AMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE----R---KLVGIITKGTIAL 104 (105)
T ss_pred ----------HccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC----C---EEEEEEEHHHhcc
Confidence 46778899999999999999999999999999983 5 8999999999974
No 71
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.37 E-value=1.2e-11 Score=97.18 Aligned_cols=109 Identities=22% Similarity=0.340 Sum_probs=85.5
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~ 245 (323)
++++++.++++.+|.+.|.++++..+||+|. ++++|++|..|+.+.+...... . . ..+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~---~-----~----~~~~------- 60 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAK---F-----S----LPVR------- 60 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhccccc---c-----C----cCHH-------
Confidence 5678999999999999999999999999994 8999999999997654311100 0 0 0011
Q ss_pred cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
++|.++++++.+++++.+|+.+|.+ . +.+||+|+ + | +++|+||.+||++|
T Consensus 61 ---------~~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~--~-~---~~~Gvvt~~di~~~ 110 (110)
T cd04609 61 ---------EVMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDE--G-G---KFVGIITRADLLKY 110 (110)
T ss_pred ---------HHhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEec--C-C---eEEEEEeHHHhhcC
Confidence 1467788999999999999999988 3 45899985 3 5 79999999999976
No 72
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.36 E-value=1.1e-11 Score=97.19 Aligned_cols=106 Identities=19% Similarity=0.333 Sum_probs=88.2
Q ss_pred CCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHh
Q 020637 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL 244 (323)
Q Consensus 165 ~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~ 244 (323)
++++++..+.++.+|++.|.+++...+||.| + ++++|+++..|++.. . .. ..+.+
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d-~-~~~~g~v~~~~l~~~-----~-~~------------~~~~~----- 56 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVD-N-GKVVGIVSARDLLGK-----D-PD------------ETVEE----- 56 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeE-C-CEEEEEEEHHHhhcc-----C-cc------------ccHHH-----
Confidence 4678899999999999999999999999998 3 899999999998531 0 00 00111
Q ss_pred hcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 245 ~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
+|...+.++.+++++.+|+.+|.+++.+++||+|+ .| +++|+||..||+++
T Consensus 57 -----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~g---~~~Gvi~~~di~~~ 107 (107)
T cd04610 57 -----------IMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDE---NN---NLVGIITNTDVIRS 107 (107)
T ss_pred -----------hCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECC---CC---eEEEEEEHHHhhcC
Confidence 46777899999999999999999999999999985 35 79999999999874
No 73
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.36 E-value=6.4e-12 Score=123.38 Aligned_cols=122 Identities=16% Similarity=0.265 Sum_probs=101.9
Q ss_pred ccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhh
Q 020637 152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET 231 (323)
Q Consensus 152 l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~ 231 (323)
|++.+|.|+|..-.++++++.++++.++++.|.+++++.+||++++..+++|||+..|++..+. . ...
T Consensus 188 l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~---~--~~~------- 255 (408)
T TIGR03520 188 FGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN---K--KNF------- 255 (408)
T ss_pred cCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc---c--CCC-------
Confidence 4789999999655689999999999999999999999999999875679999999999964321 0 000
Q ss_pred hhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637 232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (323)
Q Consensus 232 ~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~ 311 (323)
.+.+ +|+ ++.+|.+++++.++++.|.+++.|..+|+|+ . | .++||||..||++
T Consensus 256 ----~l~~----------------~~~-~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE--~-G---~~~GiVT~eDile 308 (408)
T TIGR03520 256 ----DWQS----------------LLR-EPYFVPENKKLDDLLRDFQEKKNHLAIVVDE--Y-G---GTSGLVTLEDIIE 308 (408)
T ss_pred ----CHHH----------------HcC-CCeEeCCCCcHHHHHHHHHhcCceEEEEEcC--C-C---CEEEEEEHHHHHH
Confidence 0111 354 5689999999999999999999999999995 3 4 6999999999999
Q ss_pred c
Q 020637 312 C 312 (323)
Q Consensus 312 ~ 312 (323)
.
T Consensus 309 e 309 (408)
T TIGR03520 309 E 309 (408)
T ss_pred H
Confidence 8
No 74
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.36 E-value=8.1e-12 Score=98.39 Aligned_cols=108 Identities=19% Similarity=0.300 Sum_probs=85.8
Q ss_pred CCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHh
Q 020637 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL 244 (323)
Q Consensus 165 ~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~ 244 (323)
+++++++.++++.+|.+.|.+++...+||.|. .|+++|+|+..|++.. . . . . . .+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~---~-~-~-~--------~---~v~~----- 58 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDD-DGKLVGIVTNRDLRFE---T-D-L-D--------K---PVSE----- 58 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcC-CCEEEEEEEhhHeeec---c-c-C-C--------C---CHHH-----
Confidence 35688899999999999999999999999995 6899999999997421 0 0 0 0 0 0111
Q ss_pred hcccccCCCCCCCCCCcEEeCC-CCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 245 NLKRQMDGNGRPCPRPLVQAGP-YDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 245 ~~~~~~~~~~~im~~~~vtv~p-d~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
+|...+..+.+ ++++.+|+.+|.+++.+++||+|+ .| +++|+||.+|+++.
T Consensus 59 -----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvi~~~dil~~ 110 (110)
T cd04601 59 -----------VMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDD---EG---KLKGLITVKDIEKR 110 (110)
T ss_pred -----------hcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcC---CC---CEEEEEEhhhhhcC
Confidence 45555566666 999999999999999999999984 34 79999999999863
No 75
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=1.3e-11 Score=103.30 Aligned_cols=133 Identities=18% Similarity=0.343 Sum_probs=93.4
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCC--------CCCChhhhhhhhHHHH
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNG--------SNLTEEELETHTISAW 237 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~--------~~l~~~~l~~~~i~~~ 237 (323)
+++++..++++.+|++.|.++++.++||+|+ ++++|++|..|++..+....... ..+. ..+. ++..|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~ 76 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIE-LPLR--EFINW 76 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeee-ccch--heeeh
Confidence 5688999999999999999999999999994 79999999999987654221100 0000 0000 00112
Q ss_pred HHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637 238 KVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (323)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~ 311 (323)
.+....... .....+.++|..++.++.+++++.+|+..|.+++.+++||+|. | +++|+||.+|+++
T Consensus 77 ~~~~~~~~~-~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~----~---~~~Gvvt~~dl~~ 142 (143)
T cd04634 77 EETKRALTD-AGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED----G---RLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHHHH-HhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC----C---EEEEEEEHHHhhc
Confidence 111110000 0000122467888999999999999999999999999999983 4 7999999999986
No 76
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.35 E-value=1.8e-11 Score=98.22 Aligned_cols=120 Identities=19% Similarity=0.339 Sum_probs=90.3
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~ 245 (323)
++.+++.++++.+|++.|.+++...+||+|. +++++|+|+..|++........... . ... ......
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~~~~~~-~--~~~-----~~~~~~----- 67 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDE-EGRLVGIVTDRDLRDASPSPFTTLS-E--HEL-----YLLLKM----- 67 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECC-CCcEEEEEEHHHHHHHhhhhcccch-h--hhh-----hhhcCc-----
Confidence 5678899999999999999999999999995 6899999999998754322111000 0 000 000000
Q ss_pred cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
.+.++|..+++++.+++++.+++.+|.+++.+++||+|+ | +++|++|.+||+++
T Consensus 68 ------~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~----~---~~~Gvv~~~di~~~ 121 (121)
T cd04584 68 ------PVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED----G---RLVGIITETDLLRT 121 (121)
T ss_pred ------CHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC----C---EEEEEEEHHHhhcC
Confidence 011246778899999999999999999999999999983 4 79999999999864
No 77
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.35 E-value=1.4e-11 Score=98.50 Aligned_cols=107 Identities=19% Similarity=0.302 Sum_probs=84.9
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCC--CCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHH
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQ 243 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~--~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~ 243 (323)
+++++..++++.+|.+.|.++++..+||+|.. .++++|+|+..|+... . .... .+.+
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~-~---~~~~-------------~v~~---- 61 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFL-T---DSET-------------PLSE---- 61 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhh-h---ccCC-------------CHHH----
Confidence 46788899999999999999999999999842 5899999999998421 1 0000 0111
Q ss_pred hhcccccCCCCCCCCCCcEEeCC--CCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637 244 LNLKRQMDGNGRPCPRPLVQAGP--YDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (323)
Q Consensus 244 ~~~~~~~~~~~~im~~~~vtv~p--d~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~ 311 (323)
+|.....++.+ ++++.+++.+|.+++++.+||+|+ + | +++|+||..||++
T Consensus 62 ------------~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~--~-~---~~~Gvit~~di~~ 113 (114)
T cd04602 62 ------------VMTPREVLVVAPTGITLEEANEILRESKKGKLPIVND--D-G---ELVALVTRSDLKK 113 (114)
T ss_pred ------------hcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECC--C-C---eEEEEEEHHHhhc
Confidence 46666666755 999999999999999999999985 3 4 7999999999975
No 78
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.35 E-value=2.5e-11 Score=94.60 Aligned_cols=112 Identities=28% Similarity=0.492 Sum_probs=90.5
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~ 245 (323)
++++++.+.++.+|.+.|.+++...+||+|+ .++++|+++..|++..+...... ... ...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~G~v~~~~l~~~~~~~~~~-------~~~-----~~~------- 61 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDD-DGRLVGIVTERDLLRALAEGGLD-------PLV-----TVG------- 61 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECC-CCCEEEEEeHHHHHHHHHhccCC-------ccc-----cHH-------
Confidence 5678899999999999999999999999995 58999999999997655321110 000 001
Q ss_pred cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
++|..++.++.+++++.+++..|.+++.+++||+|. + + +++|+||..|++++
T Consensus 62 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--~-~---~~~G~i~~~dl~~~ 113 (113)
T cd02205 62 ---------DVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDD--E-G---RLVGIVTRSDILRA 113 (113)
T ss_pred ---------HHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcC--C-C---cEEEEEEHHHhhcC
Confidence 146778899999999999999999999999999985 3 5 79999999999864
No 79
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.35 E-value=5.4e-12 Score=125.70 Aligned_cols=115 Identities=12% Similarity=0.122 Sum_probs=96.4
Q ss_pred ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhh
Q 020637 154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT 233 (323)
Q Consensus 154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~ 233 (323)
..+.+++| .++++++.+++++.+|+++|.++++..+||+|+ ++++|+||.+|+.. . . . .
T Consensus 87 ~VKv~eim--~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~~----~-~-~-----~------ 145 (475)
T TIGR01303 87 FVKSRDLV--LDTPITLAPHDTVSDAMALIHKRAHGAAVVILE--DRPVGLVTDSDLLG----V-D-R-----F------ 145 (475)
T ss_pred hcchhhcc--ccCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhhc----C-C-C-----C------
Confidence 45667887 568899999999999999999999999999984 68999999999721 1 0 0 0
Q ss_pred HHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 234 i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
..+. ++|+++++++.+++++.+|+.+|.++++++|||+|+ +| +++||||++||+++
T Consensus 146 -~~V~----------------dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~---~g---~LvGIIT~~DLl~~ 201 (475)
T TIGR01303 146 -TQVR----------------DIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDA---DG---TLAGILTRTGALRA 201 (475)
T ss_pred -CCHH----------------HHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEHHHHHHH
Confidence 0111 258999999999999999999999999999999985 35 79999999999997
No 80
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.33 E-value=2.4e-11 Score=101.15 Aligned_cols=116 Identities=16% Similarity=0.115 Sum_probs=80.8
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~ 245 (323)
+++++.+++++.+|++.|.++++.++||+|+ .++++|+||..|+++.+............+.+.... ..+.++...
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~-~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~-- 77 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS-DDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNT-CLVSSVCTK-- 77 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHHHHHHhhccccccccchhhccccc-ccHHHHhhh--
Confidence 5788999999999999999999999999995 689999999999987664221100000000000000 001111100
Q ss_pred cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEec
Q 020637 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHS 290 (323)
Q Consensus 246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~ 290 (323)
..+.+.|+++++++.++++|.+|+.+|.++++++|||+|+
T Consensus 78 -----~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~ 117 (133)
T cd04592 78 -----GISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR 117 (133)
T ss_pred -----hhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence 0011236788999999999999999999999999999986
No 81
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.33 E-value=3.6e-11 Score=120.59 Aligned_cols=114 Identities=17% Similarity=0.275 Sum_probs=95.3
Q ss_pred cccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHH
Q 020637 157 VYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISA 236 (323)
Q Consensus 157 ~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~ 236 (323)
..|+| ..++++++++.++.+|+++|.++++..+||+|+ .++++|+||.+|+.... ... ..
T Consensus 89 ~~dim--~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~-~g~lvGiVt~~DL~~~~----~~~-------------~~ 148 (486)
T PRK05567 89 SESGV--VTDPVTVTPDTTLAEALALMARYGISGVPVVDE-NGKLVGIITNRDVRFET----DLS-------------QP 148 (486)
T ss_pred hhhcc--cCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEcc-CCEEEEEEEHHHhhhcc----cCC-------------Cc
Confidence 45667 478999999999999999999999999999995 78999999999984210 000 01
Q ss_pred HHHHHHHhhcccccCCCCCCCC-CCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 237 WKVGKLQLNLKRQMDGNGRPCP-RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~im~-~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
+.+ +|. ++++++.+++++.+|+.+|.+++++.+||+|+ .| +++|+||.+||+++
T Consensus 149 V~d----------------im~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe---~g---~lvGiIT~~DLl~~ 203 (486)
T PRK05567 149 VSE----------------VMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDD---NG---RLKGLITVKDIEKA 203 (486)
T ss_pred HHH----------------HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEEhHHhhhh
Confidence 111 466 78999999999999999999999999999985 35 79999999999987
No 82
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.30 E-value=3.3e-11 Score=120.87 Aligned_cols=114 Identities=19% Similarity=0.271 Sum_probs=93.3
Q ss_pred CCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCC--CCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHH
Q 020637 164 SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGK 241 (323)
Q Consensus 164 s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~--~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~ 241 (323)
..+++++.+++++.+|.++|.++++..+||+|++ .++++|+||.+|+.. . ... . . .+.
T Consensus 103 i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~----~-~~~-~--------~---~V~--- 162 (495)
T PTZ00314 103 IMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDF----V-KDK-S--------T---PVS--- 162 (495)
T ss_pred ccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhh----c-ccC-C--------C---CHH---
Confidence 3677899999999999999999999999999853 379999999999841 1 000 0 0 011
Q ss_pred HHhhcccccCCCCCCCCC--CcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccccccC
Q 020637 242 LQLNLKRQMDGNGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCKHFL 316 (323)
Q Consensus 242 ~~~~~~~~~~~~~~im~~--~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~~~f~ 316 (323)
++|++ +++++.+++++.||+.+|.+++++.+||+|+ + + +++|+||.+||++...|+
T Consensus 163 -------------diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~--~-g---~liGIIT~~DIl~~~~~p 220 (495)
T PTZ00314 163 -------------EVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVND--N-G---ELVALVSRSDLKKNRGYP 220 (495)
T ss_pred -------------HhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC--C-C---cEEEEEEehHhhhcccCc
Confidence 25776 8999999999999999999999999999985 3 4 799999999999984444
No 83
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.30 E-value=1.6e-11 Score=97.21 Aligned_cols=102 Identities=18% Similarity=0.342 Sum_probs=82.7
Q ss_pred EecchhHHHHHHHHHHCC-----CCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHh
Q 020637 170 LDVNLAVKQAFHVLYEQG-----LPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL 244 (323)
Q Consensus 170 vd~~~~v~~A~~~l~~~~-----i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~ 244 (323)
+.+++++.+|++.|.+++ +..+||+|+ .++++|+||..|++. . . . . ..+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~-~~~~~G~v~~~~l~~----~-~-~-~-----------~~v~~----- 57 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDE-EGRLLGVVSLRDLLL----A-D-P-D-----------TPVSD----- 57 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECC-CCCEEEEEEHHHHhc----C-C-C-c-----------chHHH-----
Confidence 567889999999999888 578999985 689999999999853 0 0 0 0 00111
Q ss_pred hcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 245 ~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
+|..++.++.+++++.+++..|.+++.+.+||+|+ .| +++|+||..||+++
T Consensus 58 -----------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvit~~dll~~ 108 (109)
T cd04606 58 -----------IMDTDVISVSADDDQEEVARLFEKYDLLALPVVDE---EG---RLVGIITVDDVIDV 108 (109)
T ss_pred -----------HhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECC---CC---cEEEEEEhHHhhhh
Confidence 46777899999999999999999999999999985 35 79999999999864
No 84
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.30 E-value=2.1e-11 Score=112.71 Aligned_cols=114 Identities=16% Similarity=0.128 Sum_probs=92.6
Q ss_pred ccccccccCCCCC-eEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhh
Q 020637 154 THTVYELLPDSGK-VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH 232 (323)
Q Consensus 154 ~~~~~dvmp~s~~-vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~ 232 (323)
-.++.|+|. .+ ++++.+++++.+|++.|.+.++..+||+|+ +++++|+||..|+++.+... . .. +
T Consensus 154 ~~~v~~im~--~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~-~g~~~Givt~~dl~~~~~~~-~---~~-----~-- 219 (268)
T TIGR00393 154 LVKVKDLMQ--TTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE-NNQLVGVFTDGDLRRALLGG-G---SL-----K-- 219 (268)
T ss_pred hhhHHHHhC--CCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC-CCCEEEEEEcHHHHHHHhcC-C---cc-----c--
Confidence 368899994 55 889999999999999999999999999995 68999999999997643210 0 00 0
Q ss_pred hHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEee
Q 020637 233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLAS 305 (323)
Q Consensus 233 ~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT 305 (323)
..+. ++|.++++++.+++++.+|+.+|.+++++++||+|+ +| +++|+|+
T Consensus 220 --~~v~----------------~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g---~l~GvI~ 268 (268)
T TIGR00393 220 --SEVR----------------DFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDD---HN---KVLGVLH 268 (268)
T ss_pred --CcHH----------------HhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECC---CC---eEEEEEC
Confidence 0011 258889999999999999999999999999999985 35 7999985
No 85
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.29 E-value=1.7e-11 Score=94.47 Aligned_cols=75 Identities=27% Similarity=0.387 Sum_probs=62.4
Q ss_pred EEEEEe-eCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEE-eCCceEEEEEEEcCeeecCCCCCeeeCCCCccceE
Q 020637 22 PVRFIW-PNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCV 99 (323)
Q Consensus 22 ~v~F~w-~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~g~~~~~~~-LppG~y~YkFiVDG~w~~d~~~p~~~d~~G~~nnv 99 (323)
.++|+. .+.|++|.|.|+|++|.. .+|++.+ +|.|++++. |++|.|+|+|+|||.|+.||.++...-..+...|.
T Consensus 7 ~v~F~vwAP~A~~V~L~~~~~~~~~-~~m~~~~--~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~~~~~~~~~~~~~ 83 (85)
T cd02858 7 TVTFRLFAPKANEVQVRGSWGGAGS-HPMTKDE--AGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNPTTKPGRQVDTSG 83 (85)
T ss_pred cEEEEEECCCCCEEEEEeecCCCcc-EeCeECC--CeEEEEEECCCCCcEEEEEEEECCeEecCCCCCceeeccccccee
Confidence 578886 457999999999998864 7999875 799999984 88899999999999999999999877445554444
No 86
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.28 E-value=2.2e-11 Score=121.07 Aligned_cols=123 Identities=19% Similarity=0.277 Sum_probs=101.2
Q ss_pred hhhhhc--cccccccccCCCCCeEEEecchhHHHHHHHHHH-----CCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcC
Q 020637 147 RISSFL--STHTVYELLPDSGKVTALDVNLAVKQAFHVLYE-----QGLPMVPLWDDFKGRFVGVLSALDFILILRELGT 219 (323)
Q Consensus 147 ~~~~~l--~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~-----~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~ 219 (323)
.+++.+ ...++.++| +.++++++.+.++.+|++.|.+ +++..++|+|+ .++++|+|+.+|++. . .
T Consensus 121 ~i~~ll~~~e~tvg~iM--t~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~-~~~l~GvV~l~dLl~----a-~ 192 (449)
T TIGR00400 121 AINLLLSYSDDSAGRIM--TIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNE-SKHLKGVLSIRDLIL----A-K 192 (449)
T ss_pred HHHHHhCCCcchHHHhC--cCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECC-CCeEEEEEEHHHHhc----C-C
Confidence 344444 578999999 4789999999999999999986 57788999985 689999999999852 1 0
Q ss_pred CCCCCChhhhhhhhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCccc
Q 020637 220 NGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQE 299 (323)
Q Consensus 220 ~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~ 299 (323)
+. . .+. ++|+++++++.+++++.+|++.|.++++..+||+|+ .| +
T Consensus 193 -~~----~--------~v~----------------~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~---~g---~ 237 (449)
T TIGR00400 193 -PE----E--------ILS----------------SIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDN---EG---R 237 (449)
T ss_pred -CC----C--------cHH----------------HHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcC---CC---e
Confidence 10 0 011 257888999999999999999999999999999985 35 8
Q ss_pred EEEEeeccccccc
Q 020637 300 ILYLASLSDILKC 312 (323)
Q Consensus 300 lvGIIT~~dIl~~ 312 (323)
++|+||..|+++.
T Consensus 238 lvGiIt~~Dil~~ 250 (449)
T TIGR00400 238 LVGIVTVDDIIDV 250 (449)
T ss_pred EEEEEEHHHHHHH
Confidence 9999999999987
No 87
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.27 E-value=3.5e-11 Score=122.43 Aligned_cols=149 Identities=19% Similarity=0.241 Sum_probs=105.2
Q ss_pred cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCC--------------
Q 020637 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTN-------------- 220 (323)
Q Consensus 155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~-------------- 220 (323)
.+|.|+| .++++++.+++++.+|+++|.+++++.+||+|+ +|+++|+||..|+.+.+......
T Consensus 68 ~~V~dim--~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~i~ 144 (546)
T PRK14869 68 PQVRDLE--IDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDE-EGKLLGLVSLSDLARAYMDILDPEILSKSPTSLENII 144 (546)
T ss_pred CcHHHhc--CCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHHHH
Confidence 6899999 578999999999999999999999999999995 68999999999998754431100
Q ss_pred ----------CCCCC------------hhhh----hh---------hhH--H-------------------HHHHHHHHh
Q 020637 221 ----------GSNLT------------EEEL----ET---------HTI--S-------------------AWKVGKLQL 244 (323)
Q Consensus 221 ----------~~~l~------------~~~l----~~---------~~i--~-------------------~~~~~~~~~ 244 (323)
..... .+.+ .. ..+ . .+.+..++.
T Consensus 145 ~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~~~ 224 (546)
T PRK14869 145 RTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAKEN 224 (546)
T ss_pred HhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHhC
Confidence 00000 0000 00 000 0 000000000
Q ss_pred h---------------cccccCCCCCCCC-CCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccc
Q 020637 245 N---------------LKRQMDGNGRPCP-RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSD 308 (323)
Q Consensus 245 ~---------------~~~~~~~~~~im~-~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~d 308 (323)
+ ...+...+.++|+ ++++++.+++++.+|..+|.+++++++||+|+ +| +++||||..|
T Consensus 225 ~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~---~g---~lvGiit~~d 298 (546)
T PRK14869 225 GVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDE---DG---KVVGVISRYH 298 (546)
T ss_pred CCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcC---CC---CEEEEEEHHH
Confidence 0 0001122345799 89999999999999999999999999999985 35 8999999999
Q ss_pred cccc
Q 020637 309 ILKC 312 (323)
Q Consensus 309 Il~~ 312 (323)
+++.
T Consensus 299 l~~~ 302 (546)
T PRK14869 299 LLSP 302 (546)
T ss_pred hhcc
Confidence 9987
No 88
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.26 E-value=5.1e-11 Score=118.38 Aligned_cols=126 Identities=18% Similarity=0.280 Sum_probs=99.6
Q ss_pred hhhhhccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCCh
Q 020637 147 RISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTE 226 (323)
Q Consensus 147 ~~~~~l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~ 226 (323)
...++|+..++.++| +++++++.+++++.+|++.|.++++..+||+|+ .++++|+||..|++..+..-....
T Consensus 327 ~~~~~l~~~~v~~im--~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~~~----- 398 (454)
T TIGR01137 327 TVFDVLKNATVKDLH--LPAPVTVHPTETVGDAIEILREYGFDQLPVVTE-AGKVLGSVTLRELLSALFAGKANP----- 398 (454)
T ss_pred cHHHHhccCCHHHhC--cCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHhccCCCc-----
Confidence 456668999999999 578999999999999999999999999999995 689999999999976443210000
Q ss_pred hhhhhhhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeec
Q 020637 227 EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASL 306 (323)
Q Consensus 227 ~~l~~~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~ 306 (323)
+ . .+. ++|.+++.++.+++++.+++.+|.+++ +|||++ + | +++||||+
T Consensus 399 ---~-~---~v~----------------~im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~--~-g---~liGvvt~ 446 (454)
T TIGR01137 399 ---D-D---AVS----------------KVMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTE--E-G---KPIGVVTK 446 (454)
T ss_pred ---C-C---CHH----------------HhcCCCCeEECCcCcHHHHHHHHHHCC---eeEEEE--C-C---EEEEEEEH
Confidence 0 0 011 257888899999999999999998753 455653 2 4 89999999
Q ss_pred cccccc
Q 020637 307 SDILKC 312 (323)
Q Consensus 307 ~dIl~~ 312 (323)
.||+++
T Consensus 447 ~dll~~ 452 (454)
T TIGR01137 447 IDLLSF 452 (454)
T ss_pred HHHHHh
Confidence 999874
No 89
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.25 E-value=4.2e-11 Score=116.33 Aligned_cols=121 Identities=25% Similarity=0.351 Sum_probs=95.3
Q ss_pred CCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHh
Q 020637 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL 244 (323)
Q Consensus 165 ~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~ 244 (323)
..++.+..++++.+|+++|.++++.++||+|. .|+.+|+++..|.+...+....+ .+. .+ .+.+.....
T Consensus 237 ~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~-~g~~v~~~s~~Dv~~l~~~~~~~--~~~------~~--~l~~~~~~~ 305 (381)
T KOG1764|consen 237 SNIASISEDTPVIEALKIMSERRISALPVVDE-NGKKVGNYSRFDVIHLAREGTYN--NLD------LS--CLSEALSHR 305 (381)
T ss_pred hhheeecCCCcHHHHHHHHHhcCcCcceEEcC-CCceecceehhhhhhhhhcCccC--ccc------hh--HHHHHhhhc
Confidence 35999999999999999999999999999996 67779999999998765532211 111 01 011221111
Q ss_pred hcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 245 ~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
. +...++++|.+..+|.+++..|..+++||+.|+|+ +| .|+|+||.+||+.+
T Consensus 306 ~----------~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~---~~---~l~GvvSLsDil~~ 357 (381)
T KOG1764|consen 306 P----------IRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDE---DG---VLVGVISLSDILSY 357 (381)
T ss_pred c----------cccCccEEEeecchHHHHHHHHHhcCceEEEEEcC---CC---cEEEEeeHHHHHHH
Confidence 1 34566999999999999999999999999999995 35 79999999999999
No 90
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.25 E-value=9.6e-11 Score=93.77 Aligned_cols=113 Identities=15% Similarity=0.167 Sum_probs=86.4
Q ss_pred CeEEEecchhHHHHHHHHHHCC-CCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQG-LPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL 244 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~-i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~ 244 (323)
++.++.+++++.+|++.|.+.+ +..+||+|+ |+++|+++..|++.++..... .......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~------~~~~~~~------------ 61 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYG------RALYGKK------------ 61 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhh------HHHHcCC------------
Confidence 4567889999999999999887 899999995 899999999999764432100 0000000
Q ss_pred hcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCE---EeEEecCCCCCCcccEEEEeecccccc
Q 020637 245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVAT---VPIIHSTGPAGSCQEILYLASLSDILK 311 (323)
Q Consensus 245 ~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~r---lPVvD~~~~~g~~~~lvGIIT~~dIl~ 311 (323)
.++++|..+++++.+++++.+|+.+|.+++.++ +||+++ + | +++|+||..||++
T Consensus 62 -------~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~--~-~---~~~Gvvs~~di~~ 118 (119)
T cd04598 62 -------PVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTE--E-G---RYLGIGTVKDLLR 118 (119)
T ss_pred -------cHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEee--C-C---eEEEEEEHHHHhc
Confidence 012258888999999999999999999998754 478875 3 5 8999999999975
No 91
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=1.3e-10 Score=91.42 Aligned_cols=105 Identities=21% Similarity=0.391 Sum_probs=86.8
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~ 245 (323)
++++++.+.++.+|++.|.++++..+||+|+ .++++|+++..|++.. . .. . .+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~g~v~~~~l~~~---~-~~------~--------~~~~------ 56 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKK-SGELVGIITRKDLLRN---P-EE------E--------QLAL------ 56 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEHHHHHhc---c-cc------c--------hHHH------
Confidence 5788999999999999999999999999985 5899999999998531 0 00 0 0111
Q ss_pred cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
+|..++.++.+++++.+++.+|.+++.+++||+|+ | +++|+||..|+++.
T Consensus 57 ----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~----~---~~~G~it~~d~~~~ 106 (106)
T cd04638 57 ----------LMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD----G---KLVGIVTVADIVRA 106 (106)
T ss_pred ----------HhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC----C---EEEEEEEHHHhhcC
Confidence 36677889999999999999999999999999984 4 79999999999863
No 92
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.21 E-value=4.6e-11 Score=111.90 Aligned_cols=118 Identities=17% Similarity=0.237 Sum_probs=101.2
Q ss_pred ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhh
Q 020637 154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT 233 (323)
Q Consensus 154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~ 233 (323)
-.++.|+|.-..+...+..+.++.+-.++-.+.|....||+|. ..+++||||.+|+++. .++ +.
T Consensus 187 I~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~-~~kvvGvVt~rDv~~~------~~~----t~----- 250 (432)
T COG4109 187 IITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNR-SMKVVGVVTMRDVLDK------KPS----TT----- 250 (432)
T ss_pred eeeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecc-cceEEEEEEehhhhcC------CCC----cc-----
Confidence 4678899976778889999999999999999999999999995 7899999999998531 111 11
Q ss_pred HHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 234 i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
+ + .+|++.+++|.+.+++.-++.+|+-.++.-+||+|+ + . +|+||||++|+|++
T Consensus 251 ---i-e---------------KVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~--n-~---~llGiitR~dvlk~ 304 (432)
T COG4109 251 ---I-E---------------KVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDS--N-N---TLLGIITRQDVLKS 304 (432)
T ss_pred ---H-H---------------HHhccCCeeecccchHHHHHHHHHhccceeeeEEcC--C-c---eEEEEEEHHHHHHH
Confidence 1 1 169999999999999999999999999999999996 3 3 79999999999999
No 93
>PRK11573 hypothetical protein; Provisional
Probab=98.97 E-value=8.7e-09 Score=101.43 Aligned_cols=126 Identities=17% Similarity=0.192 Sum_probs=104.0
Q ss_pred ccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhh
Q 020637 152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET 231 (323)
Q Consensus 152 l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~ 231 (323)
|++.++.|+|..-.+++.++.+.++.++++.+.+++.+.+||++++..+++|+|..+|++..+.. . ...
T Consensus 184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~---~-~~~------- 252 (413)
T PRK11573 184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTE---K-KEF------- 252 (413)
T ss_pred cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhc---c-CcC-------
Confidence 47899999998889999999999999999999999999999998766799999999999754321 0 000
Q ss_pred hhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637 232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (323)
Q Consensus 232 ~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~ 311 (323)
.+..+.+ + .+++..|....++.++...|.+++.|-.-|+|+ . | ...||||..||++
T Consensus 253 -~~~~l~~----------------~-~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE--y-G---~~~GiVTleDilE 308 (413)
T PRK11573 253 -TKENMLR----------------A-ADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE--Y-G---DIQGLVTVEDILE 308 (413)
T ss_pred -CHHHHHh----------------h-ccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEec--C-C---CeEEEeeHHHHHH
Confidence 0111111 2 356789999999999999999999999999995 4 4 5999999999999
Q ss_pred c
Q 020637 312 C 312 (323)
Q Consensus 312 ~ 312 (323)
.
T Consensus 309 e 309 (413)
T PRK11573 309 E 309 (413)
T ss_pred H
Confidence 8
No 94
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.95 E-value=5e-10 Score=78.76 Aligned_cols=51 Identities=27% Similarity=0.467 Sum_probs=47.7
Q ss_pred CCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 256 im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
+|+++++++.+++++.+|+..|.+++++++||+|+ +| +++|+||.+||+++
T Consensus 4 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~---~~---~~~G~is~~dl~~~ 54 (57)
T PF00571_consen 4 IMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDE---DG---KLVGIISRSDLLKA 54 (57)
T ss_dssp HSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEEST---TS---BEEEEEEHHHHHHH
T ss_pred CCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec---CC---EEEEEEEHHHHHhh
Confidence 68999999999999999999999999999999985 35 89999999999976
No 95
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.95 E-value=2.2e-09 Score=75.49 Aligned_cols=55 Identities=18% Similarity=0.466 Sum_probs=50.0
Q ss_pred ccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637 158 YELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (323)
Q Consensus 158 ~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~ 215 (323)
.|+| +++++++++++++.+|++.|.+++++.+||+|+ .++++|+||.+|+++.+.
T Consensus 2 ~~~m--~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~-~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 2 GDIM--TPPPITVSPDDSLEEALEIMRKNGISRLPVVDE-DGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHS--BSSSEEEETTSBHHHHHHHHHHHTSSEEEEEST-TSBEEEEEEHHHHHHHHH
T ss_pred eECC--cCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec-CCEEEEEEEHHHHHhhhh
Confidence 4678 569999999999999999999999999999995 699999999999987653
No 96
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.82 E-value=2.8e-08 Score=98.18 Aligned_cols=126 Identities=20% Similarity=0.343 Sum_probs=104.6
Q ss_pred HHHhhhhhc--cccccccccCCCCCeEEEecchhHHHHHHHHHH-----CCCCeeeeEeCCCCeEEEEEehHHHHHHHHh
Q 020637 144 SRDRISSFL--STHTVYELLPDSGKVTALDVNLAVKQAFHVLYE-----QGLPMVPLWDDFKGRFVGVLSALDFILILRE 216 (323)
Q Consensus 144 ~~~~~~~~l--~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~-----~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~ 216 (323)
++..++..+ ...++.-+| ....+++..+.|+.+|+..+++ ..+..+.|+|. +++++|+++.++++.
T Consensus 119 ~r~~v~~~l~y~e~taG~~M--t~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~-~~~L~Gvvsl~~Ll~---- 191 (451)
T COG2239 119 ERARVRQLLSYPEDTAGRIM--TTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDE-KGKLLGVVSLRDLLT---- 191 (451)
T ss_pred HHHHHHHhcCCChhhhhccc--eeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECC-ccceEEEeeHHHHhc----
Confidence 666777777 478899999 6899999999999999999994 46788999995 789999999999851
Q ss_pred hcCCCCCCChhhhhhhhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCC
Q 020637 217 LGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGS 296 (323)
Q Consensus 217 ~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~ 296 (323)
.++ + ..+.+ +|.+.+++|.+++..++++++|.++++-.+||||+ ++
T Consensus 192 --a~~-----~-------~~i~~----------------im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~---~~- 237 (451)
T COG2239 192 --AEP-----D-------ELLKD----------------LMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDE---DN- 237 (451)
T ss_pred --CCc-----H-------hHHHH----------------HhcccceeecccCCHHHHHHHHHHhCCeecceECC---CC-
Confidence 111 0 01122 57888999999999999999999999999999996 34
Q ss_pred cccEEEEeeccccccc
Q 020637 297 CQEILYLASLSDILKC 312 (323)
Q Consensus 297 ~~~lvGIIT~~dIl~~ 312 (323)
+|+|+||.-||+..
T Consensus 238 --~LiG~itiDDiidv 251 (451)
T COG2239 238 --RLIGIITIDDIIDV 251 (451)
T ss_pred --ceeeeeeHHHHHHH
Confidence 89999999999865
No 97
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.80 E-value=2.4e-08 Score=75.07 Aligned_cols=70 Identities=33% Similarity=0.527 Sum_probs=58.9
Q ss_pred eEEEEEeeC-CCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEEeCC-ceEEEEEEEcCeeecCCCCCeeeCC
Q 020637 21 VPVRFIWPN-GGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPP-GHHQYKFYVDGEWRHDENQPHVSGN 92 (323)
Q Consensus 21 ~~v~F~w~~-~~~~V~l~Gsf~~W~~~~~m~~~~~~~g~~~~~~~Lpp-G~y~YkFiVDG~w~~d~~~p~~~d~ 92 (323)
..++|++.. .+++|.|.++|++|....+|.+.. .|.|++.+.+.. +.|.|+|.|||.|.+++.++...+.
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~~--~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~ 75 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKVE--DGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPKADEG 75 (83)
T ss_pred ccEEEEEECCCCCEEEEEEEECCCCCcccCEECC--CceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChhhhcC
Confidence 468898865 689999999999966668998765 699999999887 9999999999999998887655543
No 98
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.76 E-value=1.4e-08 Score=93.45 Aligned_cols=101 Identities=19% Similarity=0.288 Sum_probs=70.3
Q ss_pred eEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHH-hhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHH
Q 020637 200 RFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQ-LNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKIL 278 (323)
Q Consensus 200 ~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~-~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~ 278 (323)
+=+| +|.+|+-.+|+.+.... .++.+|++.. +++...+ +.-+.....+.+||+++++++++++++.+|-.+|.
T Consensus 199 ~rvg-fs~~Dld~aL~~~~E~l-DIdrddLe~l----lr~~elqa~~R~~~~LtcadIMSrdVvtv~~~ts~dhA~~ll~ 272 (382)
T COG3448 199 QRVG-FSSEDLDAALQRLGETL-DIDRDDLERL----LRETELQALRRRMGELTCADIMSRDVVTVSTDTSIDHARKLLQ 272 (382)
T ss_pred hccC-CCHHHHHHHHHhcCcee-cCCHHHHHHH----HHHHHHHHHHHHhccccHHHhcCccceecCCcCChHHHHHHHH
Confidence 3445 68889988888765321 2333555432 1111111 10001123356799999999999999999999999
Q ss_pred HcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 279 QNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 279 ~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
+++++.|||+|+ + . +|+||+|++|+++.
T Consensus 273 ~H~ikaLPV~d~--~-~---rl~GiVt~~dl~~~ 300 (382)
T COG3448 273 EHRIKALPVLDE--H-R---RLVGIVTQRDLLKH 300 (382)
T ss_pred HcCccccccccc--c-c---ceeeeeeHHHHhhc
Confidence 999999999996 3 2 89999999999995
No 99
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.69 E-value=1.9e-07 Score=92.49 Aligned_cols=132 Identities=20% Similarity=0.314 Sum_probs=107.1
Q ss_pred HHHhhhhh--ccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCC
Q 020637 144 SRDRISSF--LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNG 221 (323)
Q Consensus 144 ~~~~~~~~--l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~ 221 (323)
+..-+.+. |.++++.++|.--.+++.++.+.++.++.+.+.+++.+..||.++....++|++...|++..+.....
T Consensus 193 E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~-- 270 (429)
T COG1253 193 EREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS-- 270 (429)
T ss_pred HHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc--
Confidence 33444444 47999999998889999999999999999999999999999999667899999999999754432100
Q ss_pred CCCChhhhhhhhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEE
Q 020637 222 SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEIL 301 (323)
Q Consensus 222 ~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lv 301 (323)
.. ... . .. +++..|.+..++.+++..|.+.+.|-.-|+|+ - | .+.
T Consensus 271 -~~------------~~~---~------------~~-~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE--y-G---~~~ 315 (429)
T COG1253 271 -DL------------DLR---V------------LV-RPPLFVPETLSLSDLLEEFREERTHMAIVVDE--Y-G---GVE 315 (429)
T ss_pred -cc------------chh---h------------cc-cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEc--C-C---CeE
Confidence 00 000 0 12 27889999999999999999999999999995 4 4 599
Q ss_pred EEeeccccccc
Q 020637 302 YLASLSDILKC 312 (323)
Q Consensus 302 GIIT~~dIl~~ 312 (323)
||+|..||++.
T Consensus 316 GlVTleDIiEe 326 (429)
T COG1253 316 GLVTLEDIIEE 326 (429)
T ss_pred EEeEHHHHHHH
Confidence 99999999998
No 100
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=98.50 E-value=7.5e-07 Score=70.53 Aligned_cols=67 Identities=25% Similarity=0.446 Sum_probs=50.9
Q ss_pred EEEEEe-eCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEEe--------CCc-eEEEEEEE-cCee--ecCCCCC
Q 020637 22 PVRFIW-PNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRL--------PPG-HHQYKFYV-DGEW--RHDENQP 87 (323)
Q Consensus 22 ~v~F~w-~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~g~~~~~~~L--------ppG-~y~YkFiV-DG~w--~~d~~~p 87 (323)
.++|+. .+.|++|+|+|+||+|++. .+|.|.+ .|+|+++++. +.| .|.|++.. ||.| +.||-..
T Consensus 6 g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~~--~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~~~DPyA~ 83 (99)
T cd02854 6 GVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKDE--FGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWIDRIPAWIK 83 (99)
T ss_pred eEEEEEECCCCCEEEEEccCCCCCCcCcccEECC--CCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEEEcCccee
Confidence 467776 5689999999999999874 6899865 8999999874 445 46666666 7866 5777765
Q ss_pred eee
Q 020637 88 HVS 90 (323)
Q Consensus 88 ~~~ 90 (323)
.+.
T Consensus 84 ~~~ 86 (99)
T cd02854 84 YVT 86 (99)
T ss_pred EEE
Confidence 444
No 101
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.46 E-value=2.4e-07 Score=88.70 Aligned_cols=114 Identities=18% Similarity=0.284 Sum_probs=92.6
Q ss_pred CCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCC--CCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHH
Q 020637 164 SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGK 241 (323)
Q Consensus 164 s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~--~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~ 241 (323)
..+.+++.++.++.+++++...+++..+||.... .++++|+||.+|+ +.+. .+. .
T Consensus 115 ~~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi-~f~~---~~~--~----------------- 171 (503)
T KOG2550|consen 115 INNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDI-QFLE---DNS--L----------------- 171 (503)
T ss_pred ccCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhh-hhhh---ccc--c-----------------
Confidence 3577899999999999999999999999999632 3689999999997 2221 110 0
Q ss_pred HHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccccccC
Q 020637 242 LQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCKHFL 316 (323)
Q Consensus 242 ~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~~~f~ 316 (323)
.+.++|+...+++..+.+|.++=.++-+.+-.+|||+|+ . | +||.||++.|+.+.++++
T Consensus 172 ----------~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~--~-g---elva~~~rtDl~k~~~yP 230 (503)
T KOG2550|consen 172 ----------LVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDD--K-G---ELVAMLSRTDLMKNRDYP 230 (503)
T ss_pred ----------hhhhhcccccccccccccHHHHHHHHHhhhcCCcceecc--C-C---ceeeeeehhhhhhhcCCC
Confidence 012368888899999999999999999999999999996 3 5 799999999999985544
No 102
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.41 E-value=2e-06 Score=83.34 Aligned_cols=104 Identities=11% Similarity=0.218 Sum_probs=83.8
Q ss_pred EEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhhcc
Q 020637 168 TALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLK 247 (323)
Q Consensus 168 v~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~ 247 (323)
+...++.+..+|++.|..++...+.|+|. ++++.|+++..++...+.. .. .+.+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~----~~-------------~~~~-------- 306 (363)
T TIGR01186 253 ITKTADKGPRSALQLMRDERVDSLYVVDR-QNKLVGVVDVESIKQARKK----AQ-------------GLQD-------- 306 (363)
T ss_pred eeecCCCCHHHHHHHHHhcCCceEEEEcC-CCCEEEEEeHHHHHHHhhc----CC-------------chhh--------
Confidence 45566778999999999999999999995 7899999999987533221 00 0111
Q ss_pred cccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 248 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 248 ~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
.|...+.++.++++|.+++.+|.+++.. +||+|+ .| +++|+||+.+|+++
T Consensus 307 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~---~~---~~~g~i~~~~~~~~ 356 (363)
T TIGR01186 307 --------VLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDE---DQ---RLVGIVTRGSLVDA 356 (363)
T ss_pred --------hhccCCceECCCCcHHHHHHHHHhCCCC-EEEECC---CC---cEEEEEEHHHHHHH
Confidence 3456677899999999999999999999 999985 35 89999999999987
No 103
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.40 E-value=1.7e-06 Score=84.94 Aligned_cols=103 Identities=15% Similarity=0.192 Sum_probs=81.8
Q ss_pred EEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhhccc
Q 020637 169 ALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKR 248 (323)
Q Consensus 169 ~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~~ 248 (323)
....+.+..+|+..|.+++..++.|+|. +++++|+|+..|+...... . . .+.+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~---~-~-------------~~~~--------- 341 (400)
T PRK10070 289 RKTPGFGPRSALKLLQDEDREYGYVIER-GNKFVGAVSIDSLKTALTQ---Q-Q-------------GLDA--------- 341 (400)
T ss_pred ccCCCCCHHHHHHHHHhcCCceEEEEcC-CCcEEEEEeHHHHHhhhhc---C-C-------------chhh---------
Confidence 3446678999999999999999999995 7899999999998543220 0 0 0111
Q ss_pred ccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 249 QMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 249 ~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
.+...+.++.++++|.+|+..|.+.... +||+|+ +| +++|+||..+++++
T Consensus 342 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~---~~---~~~g~~~~~~~~~~ 391 (400)
T PRK10070 342 -------ALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDE---DQ---QYVGIISKGMLLRA 391 (400)
T ss_pred -------hhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECC---CC---cEEEEEEHHHHHHH
Confidence 2345577999999999999999997766 999985 35 89999999999987
No 104
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=98.40 E-value=3.1e-07 Score=77.62 Aligned_cols=53 Identities=19% Similarity=0.364 Sum_probs=49.3
Q ss_pred CCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 253 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 253 ~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
++.+|++|+++|+||+++.+|+.+|.++++..|||+++ + ++||-||..+|.++
T Consensus 67 a~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~----~---k~VGsItE~~iv~~ 119 (187)
T COG3620 67 AKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE----D---KVVGSITENDIVRA 119 (187)
T ss_pred HhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC----C---eeeeeecHHHHHHH
Confidence 45689999999999999999999999999999999984 4 89999999999987
No 105
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=98.36 E-value=3.3e-07 Score=83.01 Aligned_cols=54 Identities=24% Similarity=0.394 Sum_probs=49.8
Q ss_pred CCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 252 GNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 252 ~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
.++.+|+++++++.||++|.||+.+|.+++++..||+|+ + +++||||.+||.++
T Consensus 173 ~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~----d---k~vGiit~~dI~~a 226 (294)
T COG2524 173 KVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD----D---KIVGIITLSDIAKA 226 (294)
T ss_pred hhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC----C---ceEEEEEHHHHHHH
Confidence 345689999999999999999999999999999999985 3 79999999999887
No 106
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=98.34 E-value=3.5e-07 Score=69.76 Aligned_cols=57 Identities=30% Similarity=0.594 Sum_probs=45.0
Q ss_pred eEEEEEe-eCCCceEEEEeccCC-CCCC-CCCCC-CCCCCCeEEEEEE--eCCceEEEEEEEcCe
Q 020637 21 VPVRFIW-PNGGRRVSLSGSFTR-WSEP-MPMSP-SEGCPAVFQIICR--LPPGHHQYKFYVDGE 79 (323)
Q Consensus 21 ~~v~F~w-~~~~~~V~l~Gsf~~-W~~~-~~m~~-~~~~~g~~~~~~~--LppG~y~YkFiVDG~ 79 (323)
-.++|+. .+.|++|.|++.|++ |... .+|++ .+ .|+|+++++ +++|.++|+|.|||.
T Consensus 11 ~~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~~~--~G~w~~~~~~~~~~g~~~Y~y~i~~~ 73 (85)
T PF02922_consen 11 GGVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRKDD--DGVWEVTVPGDLPPGGYYYKYRIDGD 73 (85)
T ss_dssp TEEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEECT--TTEEEEEEEGCGTTTT-EEEEEEEET
T ss_pred CEEEEEEECCCCCEEEEEEEeeecCCCceEEeeecCC--CCEEEEEEcCCcCCCCEEEEEEEEeC
Confidence 3677776 568999999999999 8654 68984 44 899999998 888988888888764
No 107
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.33 E-value=1.4e-06 Score=87.39 Aligned_cols=153 Identities=14% Similarity=0.130 Sum_probs=107.2
Q ss_pred hhccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCC----CeEEEEEehHHHHHHHHhhc-C--CCC
Q 020637 150 SFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFK----GRFVGVLSALDFILILRELG-T--NGS 222 (323)
Q Consensus 150 ~~l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~----~~~vGilT~~D~i~~l~~~~-~--~~~ 222 (323)
.+|++.++.|+| +.+|+++..-..+...+++|......+.||+|... +++.|++-.+-++..|+.-. . .++
T Consensus 577 ~~mr~L~a~ev~--~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~ 654 (762)
T KOG0474|consen 577 PYMRNLTAGEVM--SKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRS 654 (762)
T ss_pred hHhhhhhHhhhc--cCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCcc
Confidence 457889999999 67999999999999999999999999999999633 47889988888877665321 1 111
Q ss_pred C--------CChhhhhhhhHHHHHHHHHHhhc-ccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCC
Q 020637 223 N--------LTEEELETHTISAWKVGKLQLNL-KRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGP 293 (323)
Q Consensus 223 ~--------l~~~~l~~~~i~~~~~~~~~~~~-~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~ 293 (323)
. ...++++.... .++++...-.+ ....|. .-.|.+.+.+|.++++|..+..+|.+-++|++-|+.. .
T Consensus 655 ~~~~~~~~~~~~~d~a~r~~-~i~dv~lt~~e~~~yvDl-~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~--~ 730 (762)
T KOG0474|consen 655 TFDLPVRRKFTFRDFAKREP-SIEDVHLTSEEMEMYVDL-HPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPK--T 730 (762)
T ss_pred ccCcchhhcCCHHHhhhcCC-chhhhhcchHhHhhcccc-ccccCCCCcccCcccchHHHHHHHHHhcceeEEEecC--C
Confidence 1 11112211100 01110000000 000000 1268888999999999999999999999999999986 3
Q ss_pred CCCcccEEEEeeccccccc
Q 020637 294 AGSCQEILYLASLSDILKC 312 (323)
Q Consensus 294 ~g~~~~lvGIIT~~dIl~~ 312 (323)
. +++||+|++|+.++
T Consensus 731 -~---~~~gilTR~D~~~~ 745 (762)
T KOG0474|consen 731 -N---RVVGILTRKDLARY 745 (762)
T ss_pred -C---ceeEEEehhhhhhH
Confidence 2 68999999999987
No 108
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.32 E-value=6.8e-07 Score=69.96 Aligned_cols=46 Identities=13% Similarity=0.197 Sum_probs=42.3
Q ss_pred eEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637 167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (323)
Q Consensus 167 vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~ 212 (323)
++++.+++++.+|+++|.+++++.+||+|++.|+++|++|.+|+++
T Consensus 52 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 52 LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 7899999999999999999999999999963389999999999863
No 109
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.29 E-value=1.2e-06 Score=69.42 Aligned_cols=55 Identities=20% Similarity=0.333 Sum_probs=49.0
Q ss_pred cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (323)
Q Consensus 155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~ 212 (323)
.++.++|. ..+.++.+++++.+|+++|.++++..+||+|+ +++++|+||.+|+++
T Consensus 56 ~~v~~~~~--~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~-~~~~~Giit~~di~~ 110 (111)
T cd04603 56 LKVCEVYI--VPVPIVYCDSKVTDLLRIFRETEPPVVAVVDK-EGKLVGTIYERELLR 110 (111)
T ss_pred cChhheee--cCCcEECCCCcHHHHHHHHHHcCCCeEEEEcC-CCeEEEEEEhHHhhc
Confidence 45888884 56789999999999999999999999999995 689999999999964
No 110
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.23 E-value=1.9e-06 Score=69.01 Aligned_cols=60 Identities=13% Similarity=0.166 Sum_probs=51.2
Q ss_pred cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCC--CeEEEEEehHHHHH
Q 020637 153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFK--GRFVGVLSALDFIL 212 (323)
Q Consensus 153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~--~~~vGilT~~D~i~ 212 (323)
...++.++|....++.++++++++.+|+++|.++++..+||+|++. ++++|+||.+|+++
T Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 56 QKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred cCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 3567888895334789999999999999999999999999999642 69999999999853
No 111
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.23 E-value=4.9e-06 Score=79.25 Aligned_cols=125 Identities=20% Similarity=0.279 Sum_probs=103.7
Q ss_pred cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhh
Q 020637 153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH 232 (323)
Q Consensus 153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~ 232 (323)
...++.|+|-.-..+..+|.+++.++..+.+...-...+|||.++..+.+|||-.+|+++.|.+... +..++
T Consensus 198 e~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~----~~k~d---- 269 (423)
T COG4536 198 ENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE----FTKED---- 269 (423)
T ss_pred ccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc----ccHhH----
Confidence 6789999998889999999999999999999999999999997666789999999999876653311 11111
Q ss_pred hHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 233 ~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
+.. ...++..|...++|.+-...|.+++-|---|||+ - | .+.|++|..|||..
T Consensus 270 ----~~~-----------------~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDE--Y-G---~i~GLVTLEDIlEE 322 (423)
T COG4536 270 ----ILR-----------------AADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDE--Y-G---DIQGLVTLEDILEE 322 (423)
T ss_pred ----HHH-----------------HhcCCeecCCCCcHHHHHHHHHHhcceEEEEEec--c-C---cEEeeeeHHHHHHH
Confidence 111 1345689999999999999999999999999995 4 5 69999999999987
No 112
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.21 E-value=6.4e-07 Score=91.30 Aligned_cols=149 Identities=13% Similarity=0.124 Sum_probs=100.2
Q ss_pred hhhhhccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCCh
Q 020637 147 RISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTE 226 (323)
Q Consensus 147 ~~~~~l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~ 226 (323)
+.+..-....+.++|. +.+++++.+++++.+|.++|.+++++.+||+|+ +|+++|+||..|++.....-..- .+.
T Consensus 238 t~~~l~~~~~V~~iM~-~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~-~g~lvGiit~~dl~~~~~~~~iL---VD~ 312 (546)
T PRK14869 238 TARLINQSIPVSYIMT-TEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDE-DGKVVGVISRYHLLSPVRKKVIL---VDH 312 (546)
T ss_pred HHHHhhcCCCHHHhcc-CCCcEEECCCCcHHHHHHHHHhcCCCceEEEcC-CCCEEEEEEHHHhhccccCceEE---EcC
Confidence 4444556788999994 268999999999999999999999999999995 78999999999997643210000 000
Q ss_pred hhhhhhhHHHHHHHHHHhhcccccC--CCCCCCCCCcEEe---CCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEE
Q 020637 227 EELETHTISAWKVGKLQLNLKRQMD--GNGRPCPRPLVQA---GPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEIL 301 (323)
Q Consensus 227 ~~l~~~~i~~~~~~~~~~~~~~~~~--~~~~im~~~~vtv---~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lv 301 (323)
.+.. .......+. ... ...+ ..+++|+..++.+ ....+..-++.+|.++++...|++.. . .+.
T Consensus 313 ~e~~-q~~~~~~~~--~i~--~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia~----~---ll~ 380 (546)
T PRK14869 313 NEKS-QAVEGIEEA--EIL--EIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIAG----L---LLA 380 (546)
T ss_pred cccc-ccccchhhc--eEE--EEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHHH----H---HHH
Confidence 0000 000000000 000 0000 1234677776655 34566778899999999999999963 3 699
Q ss_pred EEeeccccccc
Q 020637 302 YLASLSDILKC 312 (323)
Q Consensus 302 GIIT~~dIl~~ 312 (323)
||+|.++.+++
T Consensus 381 gIlsDT~~f~~ 391 (546)
T PRK14869 381 AILSDTLLFKS 391 (546)
T ss_pred HHHHHhcCccC
Confidence 99999999987
No 113
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=98.20 E-value=1.9e-06 Score=85.90 Aligned_cols=110 Identities=13% Similarity=0.163 Sum_probs=86.0
Q ss_pred cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhH
Q 020637 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI 234 (323)
Q Consensus 155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i 234 (323)
.++.++| ...++++.+++++.+|++.|.++++..+||+|+ .|+++|+||..|+++.+....
T Consensus 195 ~~v~~im--~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~-~g~lvGiIt~~Dil~~l~~~~---------------- 255 (449)
T TIGR00400 195 EILSSIM--RSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDN-EGRLVGIVTVDDIIDVIQSEA---------------- 255 (449)
T ss_pred CcHHHHh--CCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcC-CCeEEEEEEHHHHHHHHHhhh----------------
Confidence 4577888 457889999999999999999999999999995 789999999999987665210
Q ss_pred HHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
-.+ +|+...++..+++.+.+++..|.++++..|+|. .+.|++| ..|+..
T Consensus 256 --~ed----------------~~~~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~----------~~~~~~t-~~ii~~ 304 (449)
T TIGR00400 256 --TED----------------FYMIAAVKPLDDSYFDTSILVMAKNRIIWLLVL----------LVSSTFT-ATIISN 304 (449)
T ss_pred --HHH----------------HHHhcCCCCCcchhhhchHHHHHHhccchHHHH----------HHHHHHH-HHHHHH
Confidence 011 233334455567889999999999999999988 4788888 555544
No 114
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.17 E-value=4e-06 Score=66.67 Aligned_cols=56 Identities=25% Similarity=0.400 Sum_probs=49.7
Q ss_pred ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637 154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (323)
Q Consensus 154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~ 212 (323)
..++.++| ...++++.+++++.+|++.|.++++..+||+|+ +++++|+||.+|+++
T Consensus 58 ~~~v~~~~--~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 58 TAPVENVM--TRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDE-NARPLGVLNARDALK 113 (114)
T ss_pred cCCHHHHh--cCCCeeECCCCCHHHHHHHHHHcCCCeEEEECC-CCcEEEEEEhHhhcc
Confidence 45678888 467889999999999999999999999999994 689999999999863
No 115
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.12 E-value=4.5e-06 Score=67.01 Aligned_cols=54 Identities=22% Similarity=0.439 Sum_probs=49.0
Q ss_pred cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHH
Q 020637 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI 211 (323)
Q Consensus 155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i 211 (323)
.++.|+| ..++.++..++++.+|+++|.++++..+||+|+ +++++|+||..|+.
T Consensus 58 ~~v~dim--~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~~~l~Givt~~dl~ 111 (113)
T cd04597 58 PRVRDVI--NRKPVTARPNDPLREALNLMHEHNIRTLPVVDD-DGTPAGIITLLDLA 111 (113)
T ss_pred hhHHHhc--CCCCCEECCcCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHhh
Confidence 6788999 467889999999999999999999999999995 68999999999984
No 116
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.12 E-value=5.6e-06 Score=83.33 Aligned_cols=119 Identities=18% Similarity=0.259 Sum_probs=82.6
Q ss_pred cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhH
Q 020637 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI 234 (323)
Q Consensus 155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i 234 (323)
.++.++|. ...++++..++++.+|+++|.++++..+||+|+ .++++|+||..|+++.+.+....
T Consensus 147 ~~V~dim~-~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe-~g~lvGiIT~~DLl~~~~~p~a~-------------- 210 (486)
T PRK05567 147 QPVSEVMT-KERLVTVPEGTTLEEALELLHEHRIEKLPVVDD-NGRLKGLITVKDIEKAEEFPNAC-------------- 210 (486)
T ss_pred CcHHHHcC-CCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEhHHhhhhhhCCCcc--------------
Confidence 45778884 267999999999999999999999999999995 78999999999998755321100
Q ss_pred HHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
++.. +.++-...+.+.+++ .+++..|.+.+++. .|+|. ..| +..++++..+.++.
T Consensus 211 ---~d~~------------g~l~V~aai~~~~~~--~e~a~~L~~agvdv-ivvD~--a~g---~~~~vl~~i~~i~~ 265 (486)
T PRK05567 211 ---KDEQ------------GRLRVGAAVGVGADN--EERAEALVEAGVDV-LVVDT--AHG---HSEGVLDRVREIKA 265 (486)
T ss_pred ---cccC------------CCEEEEeecccCcch--HHHHHHHHHhCCCE-EEEEC--CCC---cchhHHHHHHHHHh
Confidence 0000 001112233333422 78999999999995 47875 234 67777766665554
No 117
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.09 E-value=7.2e-06 Score=73.68 Aligned_cols=123 Identities=17% Similarity=0.256 Sum_probs=101.8
Q ss_pred cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhh
Q 020637 153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH 232 (323)
Q Consensus 153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~ 232 (323)
...++.|+|-.-++.+++..+.++.+.+..+.+..-+..||+.+++..+.|||-+.|++..++ .+...++
T Consensus 65 adl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~---~~~~~F~------- 134 (293)
T COG4535 65 ADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMR---SDAEPFD------- 134 (293)
T ss_pred HHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhc---CCccccc-------
Confidence 467888988777899999999999999999999999999999877789999999999965543 2211111
Q ss_pred hHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 233 ~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
+++ +-+|.+.|...-.|...++-|..++.|---|||+ -+ -+-|++|..|||.-
T Consensus 135 ----i~~-----------------lLRPav~VPESKrvd~lLkeFR~~RnHMAIViDE--fG----gVsGLVTIEDiLEq 187 (293)
T COG4535 135 ----IKE-----------------LLRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDE--FG----GVSGLVTIEDILEQ 187 (293)
T ss_pred ----HHH-----------------hcccceecccchhHHHHHHHHHhhcCceEEEEec--cC----CeeeeEEHHHHHHH
Confidence 122 3577888999999999999999999999999996 44 49999999999975
No 118
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.07 E-value=4.8e-06 Score=65.92 Aligned_cols=57 Identities=21% Similarity=0.457 Sum_probs=49.2
Q ss_pred ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHH
Q 020637 154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI 211 (323)
Q Consensus 154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i 211 (323)
..++.++|....++.++++++++.+|+++|.++++..+||+|+ .++++|+||..|++
T Consensus 56 ~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~-~~~~~Gvl~~~di~ 112 (114)
T cd04801 56 QTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVED-SGQVIGLITEADLL 112 (114)
T ss_pred ccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcC-CCcEEEEEecccee
Confidence 3567788854445779999999999999999999999999985 67999999999985
No 119
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.04 E-value=1e-05 Score=65.17 Aligned_cols=50 Identities=20% Similarity=0.454 Sum_probs=44.9
Q ss_pred ccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHH
Q 020637 158 YELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDF 210 (323)
Q Consensus 158 ~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~ 210 (323)
.++| +.++++++++.++.+|++.|.++++..+||+|+ .++++|+||.+|+
T Consensus 71 ~~~~--~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~vGiit~~di 120 (123)
T cd04627 71 LTIG--TSDVISINGDQPLIDALHLMHNEGISSVAVVDN-QGNLIGNISVTDV 120 (123)
T ss_pred cccC--cCCceEeCCCCCHHHHHHHHHHcCCceEEEECC-CCcEEEEEeHHHh
Confidence 3456 578899999999999999999999999999985 5899999999996
No 120
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.01 E-value=1.9e-05 Score=62.09 Aligned_cols=54 Identities=20% Similarity=0.337 Sum_probs=48.1
Q ss_pred cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (323)
Q Consensus 155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~ 212 (323)
.++.++| ...+.+++.++++.+|+++|.+++...+||+| +++++|+||.+|++.
T Consensus 58 ~~v~~~~--~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~--~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 58 TTVRAIM--NPEPIVASPDDSIDEVRRLMVERHLRYLPVLD--GGTLLGVISFHDVAK 111 (112)
T ss_pred CCHHHHh--CCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE--CCEEEEEEEHHHhhc
Confidence 4688888 45688999999999999999999999999998 379999999999863
No 121
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.98 E-value=1.1e-05 Score=62.51 Aligned_cols=61 Identities=13% Similarity=0.297 Sum_probs=49.6
Q ss_pred hhccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637 150 SFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (323)
Q Consensus 150 ~~l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~ 212 (323)
++.+-.+..|++.. ..+.+++++.++.+|+++|.++++..+||+|+ .++++|+||.+|+++
T Consensus 35 ~~~Giv~~~dl~~~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~-~~~~~Giit~~di~~ 95 (96)
T cd04614 35 KLSGIITERDLIAK-SEVVTATKRTTVSECAQKMKRNRIEQIPIING-NDKLIGLLRDHDLLK 95 (96)
T ss_pred CEEEEEEHHHHhcC-CCcEEecCCCCHHHHHHHHHHhCCCeeeEECC-CCcEEEEEEHHHhhc
Confidence 34455555565542 23889999999999999999999999999995 589999999999863
No 122
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.97 E-value=1.1e-05 Score=64.80 Aligned_cols=51 Identities=24% Similarity=0.361 Sum_probs=46.0
Q ss_pred CCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637 255 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (323)
Q Consensus 255 ~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~ 311 (323)
++|.+++.++.+++++.+|+..|.+++++.+||+|+ +| +++||||..||.+
T Consensus 62 dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~---~~---~l~Givt~~dl~~ 112 (113)
T cd04597 62 DVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDD---DG---TPAGIITLLDLAE 112 (113)
T ss_pred HhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECC---CC---eEEEEEEHHHhhc
Confidence 368889999999999999999999999999999985 35 8999999999864
No 123
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.97 E-value=1.8e-05 Score=62.09 Aligned_cols=56 Identities=20% Similarity=0.434 Sum_probs=49.7
Q ss_pred ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637 154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (323)
Q Consensus 154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~ 212 (323)
..++.++|. ..++++++++++.+|+++|.+++...+||+|+ +++++|++|..|++.
T Consensus 52 ~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~di~~ 107 (108)
T cd04596 52 DTTIEKVMT--KNPITVNPKTSVASVAHMMIWEGIEMLPVVDD-NKKLLGIISRQDVLK 107 (108)
T ss_pred cccHHHHhc--CCCeEECCCCCHHHHHHHHHHcCCCeeeEEcC-CCCEEEEEEHHHhhc
Confidence 456888884 57899999999999999999999999999994 689999999999853
No 124
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.97 E-value=1.3e-05 Score=64.21 Aligned_cols=48 Identities=21% Similarity=0.417 Sum_probs=43.4
Q ss_pred CCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 259 ~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
++++++.+++++.+|+.+|.+++++++||+|+ + | +++|++|.+||+++
T Consensus 1 ~~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~--~-~---~~~Giv~~~dl~~~ 48 (120)
T cd04641 1 KNIATARPDTPLIDVLDMLVERRVSALPIVDE--N-G---KVVDVYSRFDVINL 48 (120)
T ss_pred CCcEEEcCCCCHHHHHHHHHHcCCCeeeEECC--C-C---eEEEEEeHHHHHHH
Confidence 35789999999999999999999999999985 3 4 79999999999976
No 125
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.96 E-value=1.7e-05 Score=64.14 Aligned_cols=54 Identities=19% Similarity=0.218 Sum_probs=46.8
Q ss_pred ccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637 156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (323)
Q Consensus 156 ~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~ 212 (323)
.+.++| ..+++++.+++++.+|+++|.++++..+||+|+ .++++|+||.+|+++
T Consensus 72 ~~~~~~--~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~-~~~~~Giit~~dil~ 125 (126)
T cd04642 72 DSDGVK--SRPLITCTPSSTLKEVITKLVANKVHRVWVVDE-EGKPIGVITLTDIIS 125 (126)
T ss_pred cccccc--cCCCeEECCCCcHHHHHHHHHHhCCcEEEEECC-CCCEEEEEEHHHHhc
Confidence 344566 357899999999999999999999999999995 589999999999863
No 126
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.95 E-value=1.6e-05 Score=62.77 Aligned_cols=54 Identities=20% Similarity=0.429 Sum_probs=48.1
Q ss_pred cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHH
Q 020637 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI 211 (323)
Q Consensus 155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i 211 (323)
.++.++| ...+.++.+++++.+|+++|.+++...+||+|+ .++++|+||.+|++
T Consensus 58 ~~v~~~~--~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~di~ 111 (113)
T cd04607 58 DPVSEVM--NRNPITAKVGSSREEILALMRERSIRHLPILDE-EGRVVGLATLDDLL 111 (113)
T ss_pred CCHHHhh--cCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECC-CCCEEEEEEhHHhc
Confidence 4577888 456889999999999999999999999999984 68999999999985
No 127
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.95 E-value=1.7e-05 Score=62.80 Aligned_cols=56 Identities=18% Similarity=0.370 Sum_probs=47.8
Q ss_pred ccccccccCCCCCeEEEecc--hhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637 154 THTVYELLPDSGKVTALDVN--LAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (323)
Q Consensus 154 ~~~~~dvmp~s~~vv~vd~~--~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~ 212 (323)
..++.++|. ..++++.++ +++.+|+++|.+++...+||+|+ +|+++|+||..|+++
T Consensus 57 ~~~i~~~~~--~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~-~~~~~Gvit~~dl~~ 114 (115)
T cd04620 57 DLPIGEVMT--QPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDD-QGQLIGLVTAESIRQ 114 (115)
T ss_pred ccCHHHhcC--CCcEEEecccccCHHHHHHHHHHhCCceEEEEcC-CCCEEEEEEhHHhhc
Confidence 356778884 467778776 78999999999999999999995 689999999999864
No 128
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.93 E-value=3.2e-05 Score=60.58 Aligned_cols=55 Identities=24% Similarity=0.428 Sum_probs=48.6
Q ss_pred ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637 154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (323)
Q Consensus 154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~ 212 (323)
..++.++|. .+++++..+.++.+|+++|.+++...+||+|+ ++++|+||..|+++
T Consensus 58 ~~~~~~~~~--~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 112 (113)
T cd04623 58 DTPVSEIMT--RNVITVTPDDTVDEAMALMTERRFRHLPVVDG--GKLVGIVSIGDVVK 112 (113)
T ss_pred ccCHHHhcC--CCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC--CEEEEEEEHHHhhc
Confidence 456788883 57899999999999999999999999999984 79999999999863
No 129
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=97.93 E-value=7.2e-05 Score=58.22 Aligned_cols=54 Identities=28% Similarity=0.482 Sum_probs=44.2
Q ss_pred eEEEEEeeC---CCceEEEEec---cCCCCCC--CCCCCCCCCCCeEEEEEEeCCc-eEEEEEEE
Q 020637 21 VPVRFIWPN---GGRRVSLSGS---FTRWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYV 76 (323)
Q Consensus 21 ~~v~F~w~~---~~~~V~l~Gs---f~~W~~~--~~m~~~~~~~g~~~~~~~LppG-~y~YkFiV 76 (323)
++|+|..+. .|++|+|+|+ +.+|++. .+|+..+ .+.|++++.||++ .++|||++
T Consensus 1 v~v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~~--~~~W~~~v~l~~~~~~eYKy~~ 63 (95)
T cd05808 1 VAVTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAAT--YPVWSGTVDLPAGTAIEYKYIK 63 (95)
T ss_pred CeEEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCCC--CCCEEEEEEeCCCCeEEEEEEE
Confidence 467888864 4789999996 7799864 5888754 6789999999987 69999997
No 130
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.92 E-value=3e-05 Score=61.43 Aligned_cols=55 Identities=16% Similarity=0.434 Sum_probs=48.7
Q ss_pred ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637 154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (323)
Q Consensus 154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~ 212 (323)
..++.++|. .+++++.+++++.+|+++|.+++...+||+|+ ++++|+||..|++.
T Consensus 59 ~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~~~dl~~ 113 (114)
T cd04630 59 RVNVYEIMT--KPLISVSPDMDIKYCARLMERTNIRRAPVVEN--NELIGIISLTDIFL 113 (114)
T ss_pred ccCHHHHhc--CCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC--CEEEEEEEHHHhhc
Confidence 356778884 57899999999999999999999999999984 89999999999863
No 131
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=97.92 E-value=2.3e-05 Score=61.54 Aligned_cols=55 Identities=18% Similarity=0.341 Sum_probs=49.3
Q ss_pred cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (323)
Q Consensus 155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~ 212 (323)
.+|.++| .....++..++++.+|+++|.+++...+||+|+ .++++|+||..|+++
T Consensus 58 ~~v~~i~--~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 58 TLVERVM--TPNPVCATSDTPVLEALHLMVQGKFRHLPVVDK-SGQVVGLLDVTKLTH 112 (113)
T ss_pred CCHHHhc--CCCCeEEcCCCCHHHHHHHHHHcCCCcccEECC-CCCEEEEEEHHHhcc
Confidence 5788998 467889999999999999999999999999985 589999999999853
No 132
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.91 E-value=3.4e-05 Score=60.72 Aligned_cols=57 Identities=25% Similarity=0.466 Sum_probs=50.0
Q ss_pred ccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHH
Q 020637 152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI 211 (323)
Q Consensus 152 l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i 211 (323)
+...++.++|. .++.+++.++++.+|++.|.+++...+||+|+ .|+++|++|..|++
T Consensus 55 ~~~~~i~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~g~~~Gvvt~~dl~ 111 (113)
T cd04615 55 LKDAKVREVMN--SPVITIDANDSIAKARWLMSNNNISRLPVLDD-KGKVGGIVTEDDIL 111 (113)
T ss_pred hcCCcHHHhcc--CCceEECCCCcHHHHHHHHHHcCCCeeeEECC-CCeEEEEEEHHHhh
Confidence 34467888884 57899999999999999999999999999985 68999999999985
No 133
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=97.91 E-value=2.9e-05 Score=60.86 Aligned_cols=57 Identities=28% Similarity=0.542 Sum_probs=47.1
Q ss_pred eeEEEEEeeC---CCceEEEEeccC---CCCC--CCCCCCCCC--CCCeEEEEEEeCCc-eEEEEEEE
Q 020637 20 LVPVRFIWPN---GGRRVSLSGSFT---RWSE--PMPMSPSEG--CPAVFQIICRLPPG-HHQYKFYV 76 (323)
Q Consensus 20 ~~~v~F~w~~---~~~~V~l~Gsf~---~W~~--~~~m~~~~~--~~g~~~~~~~LppG-~y~YkFiV 76 (323)
.+.|+|.... .+++|+|+||.. +|++ .++|...++ ....|++++.||.| .++|||++
T Consensus 1 ~v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 1 QVSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred CEEEEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEE
Confidence 3788999953 489999999998 7997 468887532 35799999999998 59999999
No 134
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.91 E-value=2e-05 Score=79.39 Aligned_cols=59 Identities=17% Similarity=0.308 Sum_probs=53.2
Q ss_pred ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHH
Q 020637 154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILI 213 (323)
Q Consensus 154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~ 213 (323)
..++.++|..+.+++++++++++.+|+++|.++++..+||+|. .++++|+||..|+++.
T Consensus 160 ~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~-~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 160 DTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDK-NGNLVYLVFRKDYDSH 218 (502)
T ss_pred CCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEhHHHHhc
Confidence 4678899965568999999999999999999999999999995 6899999999999864
No 135
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=97.90 E-value=5.7e-05 Score=77.38 Aligned_cols=165 Identities=19% Similarity=0.261 Sum_probs=95.1
Q ss_pred eeEEEEE-eeCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEE-eCCceEEEEEEEcCe-----eecCCCCCeeeC
Q 020637 20 LVPVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE-----WRHDENQPHVSG 91 (323)
Q Consensus 20 ~~~v~F~-w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~g~~~~~~~-LppG~y~YkFiVDG~-----w~~d~~~p~~~d 91 (323)
...++|+ |.+.++.|.|.|+||+|... .+|.... ..|.|+++++ +++| +.|||.+++. ++.||..-....
T Consensus 35 ~~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~~-~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~~~DP~a~~~~~ 112 (628)
T COG0296 35 VSGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDRK-ESGIWELFVPGAPPG-TRYKYELIDPSGQLRLKADPYARRQEV 112 (628)
T ss_pred CCceEEEEECCCCCeEEEEeecCCccceecccccCC-CCceEEEeccCCCCC-CeEEEEEeCCCCceeeccCchhhccCC
Confidence 3457776 57789999999999999873 4555432 4799999999 9999 9999999653 356665443332
Q ss_pred CCCccceEEEecCCCCCCCC----CCCCCCCCCCchh-hhhcCCCCCCC---CCHHHHHHHHHhhhhhccccccccccCC
Q 020637 92 NYGVVNCVYIAVPQPDMVPN----TISPETSGNMEVD-DVVMRPEGFAQ---YSEADLQLSRDRISSFLSTHTVYELLPD 163 (323)
Q Consensus 92 ~~G~~nnvl~v~~~~~~~p~----~~~~~~~~~~dl~-~~~~~~~~~~~---~s~~~l~~~~~~~~~~l~~~~~~dvmp~ 163 (323)
.-++.. +.+ ..+++.=. -.+...+-..++. =++|- +.+-+ .+-.++..++-+|-.-|+ .||-++||.
T Consensus 113 ~p~~aS--~v~-~~~~y~W~d~~~~~~~~~~~~e~~vIYElHv-Gs~~~~~~~~~~e~a~~llpYl~elG-~T~IELMPv 187 (628)
T COG0296 113 GPHTAS--QVV-DLPDYEWQDERWDRAWRGRFWEPIVIYELHV-GSFTPDRFLGYFELAIELLPYLKELG-ITHIELMPV 187 (628)
T ss_pred CCCCcc--eec-CCCCcccccccccccccCCCCCCceEEEEEe-eeccCCCCcCHHHHHHHHhHHHHHhC-CCEEEEccc
Confidence 222221 222 22222111 0000000011111 11111 22222 455777777778888886 999999996
Q ss_pred CCCeE----------------EEecchhHHHHHHHHHHCCCCee
Q 020637 164 SGKVT----------------ALDVNLAVKQAFHVLYEQGLPMV 191 (323)
Q Consensus 164 s~~vv----------------~vd~~~~v~~A~~~l~~~~i~~l 191 (323)
+.=.- ...+-.-++.-+..+.++||.-+
T Consensus 188 ~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgVi 231 (628)
T COG0296 188 AEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVI 231 (628)
T ss_pred ccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEE
Confidence 53110 11222346777777778888543
No 136
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.89 E-value=1.9e-05 Score=64.00 Aligned_cols=60 Identities=23% Similarity=0.263 Sum_probs=46.9
Q ss_pred cccccccccCCCCCeEEEe----cchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637 153 STHTVYELLPDSGKVTALD----VNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (323)
Q Consensus 153 ~~~~~~dvmp~s~~vv~vd----~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~ 212 (323)
...++.++|.....++.++ +++++.+|++.|.++++..+||+|++.++++|+||.+|+++
T Consensus 62 ~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 62 SELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred hheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 3466888994333334444 57899999999999999999999952269999999999853
No 137
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.88 E-value=2.3e-05 Score=61.50 Aligned_cols=56 Identities=20% Similarity=0.401 Sum_probs=48.7
Q ss_pred cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHH
Q 020637 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILI 213 (323)
Q Consensus 155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~ 213 (323)
.+|.++| ...++++..++++.+|++.|.+++...+||+|+ .++++|+||..|+++.
T Consensus 53 ~~v~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~dll~~ 108 (109)
T cd04606 53 TPVSDIM--DTDVISVSADDDQEEVARLFEKYDLLALPVVDE-EGRLVGIITVDDVIDV 108 (109)
T ss_pred chHHHHh--CCCCeEEcCCCCHHHHHHHHHHcCCceeeeECC-CCcEEEEEEhHHhhhh
Confidence 4577777 356899999999999999999999999999985 6899999999999753
No 138
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.86 E-value=6e-05 Score=75.63 Aligned_cols=58 Identities=24% Similarity=0.398 Sum_probs=52.0
Q ss_pred cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (323)
Q Consensus 155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~ 215 (323)
..+.|+| ...++++.+++++.+|+++|.++++..+||+|+ +++++|+||.+|+++...
T Consensus 148 ~~V~diM--t~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~-~g~lvGIIT~~DIl~~~~ 205 (479)
T PRK07807 148 TQVRDVM--STDLVTLPAGTDPREAFDLLEAARVKLAPVVDA-DGRLVGVLTRTGALRATI 205 (479)
T ss_pred CCHHHhc--cCCceEECCCCcHHHHHHHHHhcCCCEEEEEcC-CCeEEEEEEHHHHHHHhh
Confidence 4588899 478999999999999999999999999999995 689999999999977554
No 139
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.85 E-value=2.4e-05 Score=64.02 Aligned_cols=56 Identities=20% Similarity=0.389 Sum_probs=50.1
Q ss_pred cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637 153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (323)
Q Consensus 153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~ 212 (323)
...++.++| ..+++++.+++++.+|+++|.+++...+||+| .|+++|+||..|+++
T Consensus 79 ~~~~v~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd--~g~~~Gvit~~di~~ 134 (135)
T cd04586 79 HGRKVADVM--TRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR--GGRLVGIVSRADLLR 134 (135)
T ss_pred cCCCHHHHh--CCCceEeCCCCcHHHHHHHHHHcCCCccCEec--CCEEEEEEEhHhhhc
Confidence 456788999 46789999999999999999999999999998 489999999999863
No 140
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.84 E-value=5e-05 Score=49.49 Aligned_cols=47 Identities=30% Similarity=0.610 Sum_probs=41.5
Q ss_pred eEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHH
Q 020637 167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL 214 (323)
Q Consensus 167 vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l 214 (323)
.++++++.++.++.+.|.++++..+||+++ +++++|+++..|++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDE-EGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECC-CCeEEEEEEHHHHHHhh
Confidence 467888999999999999999999999995 58999999999986543
No 141
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=97.84 E-value=3.4e-05 Score=60.46 Aligned_cols=55 Identities=31% Similarity=0.547 Sum_probs=49.2
Q ss_pred ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637 154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (323)
Q Consensus 154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~ 212 (323)
..+|.++| ..+++++++++++.+|++.|.+++...+||+|. ++++|++|..|+++
T Consensus 56 ~~~i~~~~--~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Giit~~di~~ 110 (111)
T cd04800 56 DTPVSEVM--TAPPITIPPDATVFEALLLMLERGIHHLPVVDD--GRLVGVISATDLLR 110 (111)
T ss_pred cCCHHHHh--CCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhc
Confidence 35688888 467899999999999999999999999999984 79999999999863
No 142
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.84 E-value=3.8e-05 Score=60.23 Aligned_cols=55 Identities=18% Similarity=0.429 Sum_probs=49.2
Q ss_pred cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHH
Q 020637 153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI 211 (323)
Q Consensus 153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i 211 (323)
...+|.++|. ...+++..++++.+|+++|.+++...+||+| +++++|+||..|++
T Consensus 54 ~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Gvvt~~di~ 108 (110)
T cd04595 54 GHAPVKDYMS--TDVVTVPPDTPLSEVQELMVEHDIGRVPVVE--DGRLVGIVTRTDLL 108 (110)
T ss_pred ccCcHHHHhc--CCCEEECCCCcHHHHHHHHHHcCCCeeEEEe--CCEEEEEEEhHHhh
Confidence 4567888984 5788999999999999999999999999998 57999999999986
No 143
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.84 E-value=3.1e-05 Score=61.96 Aligned_cols=57 Identities=23% Similarity=0.422 Sum_probs=49.9
Q ss_pred cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637 153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (323)
Q Consensus 153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~ 212 (323)
...++.++|. ..++++.+++++.+|+++|.++++..+||+|+ .|+++|++|..|++.
T Consensus 67 ~~~~i~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-~g~~~Gvit~~di~~ 123 (124)
T cd04600 67 KPETVGDIMS--PPVVTVRPDTPIAELVPLLADGGHHHVPVVDE-DRRLVGIVTQTDLIA 123 (124)
T ss_pred ccccHHHhcc--CCCeeeCCCCcHHHHHHHHHhcCCCceeEEcC-CCCEEEEEEhHHhhc
Confidence 3446778884 57899999999999999999999999999995 789999999999863
No 144
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.83 E-value=4e-05 Score=59.60 Aligned_cols=54 Identities=13% Similarity=0.257 Sum_probs=46.9
Q ss_pred ccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637 156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (323)
Q Consensus 156 ~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~ 212 (323)
++.++|. ....+++.++++.+|+++|.++++..+||+|. .++++|+||..|+++
T Consensus 52 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 52 CCGDHAE--PFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDE-DGRYVGEVTQRSIAD 105 (106)
T ss_pred chhhhcc--cCCEEECCCCCHHHHHHHHHHCCCCeeeEECC-CCcEEEEEEHHHhhc
Confidence 4677773 45678999999999999999999999999985 689999999999863
No 145
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.83 E-value=3.7e-05 Score=60.39 Aligned_cols=54 Identities=20% Similarity=0.479 Sum_probs=48.4
Q ss_pred ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHH
Q 020637 154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI 211 (323)
Q Consensus 154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i 211 (323)
..++.++| ...++++.+++++.+|++.|.++++..+||+|+ ++++|+||..|++
T Consensus 56 ~~~v~~~~--~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~di~ 109 (111)
T cd04626 56 EKKVFNIV--SQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD--NKLIGVVRTKDIL 109 (111)
T ss_pred cCcHHHHh--cCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEhHHhc
Confidence 45688888 467889999999999999999999999999984 7999999999985
No 146
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.82 E-value=3.2e-05 Score=73.65 Aligned_cols=55 Identities=13% Similarity=0.247 Sum_probs=50.0
Q ss_pred ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637 154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (323)
Q Consensus 154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~ 212 (323)
..++.|+| +.+++++++++++.+|+++|.+++++.+||+| .++++||||.+|+++
T Consensus 268 ~~~v~~im--~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~--~~~lvGiit~~dil~ 322 (326)
T PRK10892 268 QASIADVM--TPGGIRVRPGILAVDALNLMQSRHITSVLVAD--GDHLLGVLHMHDLLR 322 (326)
T ss_pred cCCHHHhc--CCCCEEECCCCCHHHHHHHHHHCCCcEEEEee--CCEEEEEEEhHHhHh
Confidence 46799999 46899999999999999999999999999997 469999999999964
No 147
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.82 E-value=3.5e-05 Score=60.64 Aligned_cols=55 Identities=20% Similarity=0.353 Sum_probs=48.3
Q ss_pred ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637 154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (323)
Q Consensus 154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~ 212 (323)
...+.++| ..+.+++..++++.+|++.|.+++...+||+|. |+++|+||..|+++
T Consensus 59 ~~~v~~~~--~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 113 (114)
T cd04629 59 VATVRDIM--TTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD--GKLVGQISRRDVLR 113 (114)
T ss_pred CccHHHHh--ccCceEECCCCcHHHHHHHHHHhCCCccCEEEC--CEEEEEEEHHHHhc
Confidence 34577888 457889999999999999999999999999994 79999999999863
No 148
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.81 E-value=6.4e-05 Score=59.25 Aligned_cols=64 Identities=20% Similarity=0.219 Sum_probs=48.4
Q ss_pred EEEE-eeCCCceEEEEeccCCCC-----CCCCCCCCCCCCCeEEEEEE-eCCceEEEEEEEcCe-----eecCCCCCeee
Q 020637 23 VRFI-WPNGGRRVSLSGSFTRWS-----EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE-----WRHDENQPHVS 90 (323)
Q Consensus 23 v~F~-w~~~~~~V~l~Gsf~~W~-----~~~~m~~~~~~~g~~~~~~~-LppG~y~YkFiVDG~-----w~~d~~~p~~~ 90 (323)
++|+ |.+.|++|.|.. |++|. ..++|.+.. +|.|++.+. +.+|. .|+|.|+|. ...||....+.
T Consensus 10 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~~--~gvw~~~v~~~~~g~-~Y~y~i~~~~~~~~~~~DPyA~~~~ 85 (100)
T cd02860 10 TTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRGE--NGVWSVTLDGDLEGY-YYLYEVKVYKGETNEVVDPYAKALS 85 (100)
T ss_pred EEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecCC--CCEEEEEeCCccCCc-EEEEEEEEeceEEEEEcCcccEeEe
Confidence 6775 467799999988 88886 346898744 799999987 55565 488888775 67888776655
No 149
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.81 E-value=4.7e-05 Score=62.06 Aligned_cols=55 Identities=25% Similarity=0.500 Sum_probs=48.8
Q ss_pred ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637 154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (323)
Q Consensus 154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~ 212 (323)
..++.++|. ..++.++.++++.+|+++|.+++...+||+|+ ++++|++|..|+++
T Consensus 77 ~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl~~ 131 (132)
T cd04636 77 GKKVEEIMT--KKVITVDEDTTIEDVARIMSKKNIKRLPVVDD--GKLVGIISRGDIIR 131 (132)
T ss_pred CCCHHHhcc--CCceEECCCCcHHHHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHhhc
Confidence 347888884 56889999999999999999999999999994 89999999999863
No 150
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.81 E-value=4.1e-05 Score=61.01 Aligned_cols=56 Identities=20% Similarity=0.456 Sum_probs=49.2
Q ss_pred cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637 153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (323)
Q Consensus 153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~ 212 (323)
...++.++| ....+++.+++++.+|+++|.++++..+||+|. ++++|+||..|+++
T Consensus 65 ~~~~~~~~~--~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~dl~~ 120 (121)
T cd04633 65 RNLPVSDIM--TRPVITIEPDTSVSDVASLMLENNIGGLPVVDD--GKLVGIVTRTDILR 120 (121)
T ss_pred hccCHHHHc--cCCceEECCCCcHHHHHHHHHHcCCCcccEEEC--CEEEEEEEHHHhhc
Confidence 445778888 357889999999999999999999999999984 79999999999863
No 151
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.80 E-value=5e-05 Score=62.75 Aligned_cols=57 Identities=18% Similarity=0.296 Sum_probs=50.0
Q ss_pred ccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637 152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (323)
Q Consensus 152 l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~ 212 (323)
+...++.++|. .+++++.+++++.+|++.|.++++..+||+|+ ++++|+||.+|+++
T Consensus 78 ~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~--~~~~Gvit~~di~~ 134 (135)
T cd04621 78 EVPLVAEDIMT--EEIITVSPNDDVVDAAKLMLEANISGLPVVDN--DNIVGVITKTDICR 134 (135)
T ss_pred cccccHHHhcC--CCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC--CEEEEEEEHHHHhh
Confidence 34567889994 57889999999999999999999999999984 79999999999863
No 152
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.79 E-value=4.6e-05 Score=60.41 Aligned_cols=57 Identities=23% Similarity=0.464 Sum_probs=50.1
Q ss_pred cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637 153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (323)
Q Consensus 153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~ 212 (323)
...++.++|. ..+++++.++++.++++.|.+++...+||+|+ .|+++|+||..|+++
T Consensus 65 ~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvvt~~di~~ 121 (122)
T cd04585 65 SKIKVSDIMT--RDPITVSPDASVEEAAELMLERKISGLPVVDD-QGRLVGIITESDLFR 121 (122)
T ss_pred cccCHHHhcc--CCCeEeCCCCcHHHHHHHHHHcCCCceeEECC-CCcEEEEEEHHHhhh
Confidence 4567888884 56899999999999999999999999999984 689999999999864
No 153
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=97.79 E-value=4.8e-05 Score=60.23 Aligned_cols=55 Identities=20% Similarity=0.359 Sum_probs=47.8
Q ss_pred ccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCC-CeEEEEEehHHHHH
Q 020637 156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFK-GRFVGVLSALDFIL 212 (323)
Q Consensus 156 ~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~-~~~vGilT~~D~i~ 212 (323)
.+.++|. ..++++..++++.+|+++|.+++...+||+|+.. |+++|+||.+|++.
T Consensus 59 ~~~~~~~--~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 59 AVDEVAT--PPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred cHHHhcc--CCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 3677774 5788999999999999999999999999998531 79999999999864
No 154
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.79 E-value=4.7e-05 Score=59.18 Aligned_cols=55 Identities=24% Similarity=0.480 Sum_probs=48.2
Q ss_pred cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (323)
Q Consensus 155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~ 212 (323)
..+.++| ...+.++..++++.+|++.|.+++...+||+|+ .|+++|++|..|+++
T Consensus 52 ~~~~~~~--~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~g~~~Gvi~~~di~~ 106 (107)
T cd04610 52 ETVEEIM--SKDLVVAVPEMDIMDAARVMFRTGISKLPVVDE-NNNLVGIITNTDVIR 106 (107)
T ss_pred ccHHHhC--CCCCeEECCCCCHHHHHHHHHHhCCCeEeEECC-CCeEEEEEEHHHhhc
Confidence 3577888 356788999999999999999999999999995 689999999999863
No 155
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.79 E-value=6.3e-05 Score=58.22 Aligned_cols=53 Identities=13% Similarity=0.315 Sum_probs=47.2
Q ss_pred cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHH
Q 020637 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI 211 (323)
Q Consensus 155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i 211 (323)
..|.++| ...+.+++.++++.+|++.|.+++...+||+|+ ++++|+||..|++
T Consensus 51 ~~~~~~~--~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~~l~ 103 (105)
T cd04599 51 RLVADAM--TREVVTISPEASLLEAKRLMEEKKIERLPVLRE--RKLVGIITKGTIA 103 (105)
T ss_pred CCHHHHc--cCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC--CEEEEEEEHHHhc
Confidence 3577788 457889999999999999999999999999984 8999999999985
No 156
>COG0517 FOG: CBS domain [General function prediction only]
Probab=97.78 E-value=4.7e-05 Score=60.10 Aligned_cols=52 Identities=25% Similarity=0.551 Sum_probs=46.9
Q ss_pred ccccccCCCCCeEEEecchhHHHHHHHHHH-CCCCeeeeEeCCCC-eEEEEEehHHH
Q 020637 156 TVYELLPDSGKVTALDVNLAVKQAFHVLYE-QGLPMVPLWDDFKG-RFVGVLSALDF 210 (323)
Q Consensus 156 ~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~-~~i~~lPV~d~~~~-~~vGilT~~D~ 210 (323)
.+.++| +..++++.++.++.+|+++|.+ ++++++||+|. ++ +++|++|.+|+
T Consensus 63 ~v~~v~--~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~-~~~~lvGivt~~di 116 (117)
T COG0517 63 PVKEVM--TKPVVTVDPDTPLEEALELMVERHKIRRLPVVDD-DGGKLVGIITLSDI 116 (117)
T ss_pred cHHHhc--cCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEEC-CCCeEEEEEEHHHc
Confidence 577888 4589999999999999999999 79999999995 54 99999999997
No 157
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.78 E-value=4.5e-05 Score=60.88 Aligned_cols=57 Identities=18% Similarity=0.384 Sum_probs=50.0
Q ss_pred cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637 153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (323)
Q Consensus 153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~ 212 (323)
...+|.++|. .++++++.++++.+|++.|.++++..+||+|+ .|+++|++|..|+++
T Consensus 65 ~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~g~~~Gvit~~dl~~ 121 (122)
T cd04635 65 ASPTVEKIMS--TPVYSVTPDDSIATAVELMLEHDIGRLPVVNE-KDQLVGIVDRHDVLK 121 (122)
T ss_pred ccCcHHHHhc--CCCeeECCCCCHHHHHHHHHHcCCCeeeEEcC-CCcEEEEEEhHHhhc
Confidence 3456788884 57899999999999999999999999999985 689999999999863
No 158
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=97.76 E-value=4.7e-05 Score=63.12 Aligned_cols=47 Identities=23% Similarity=0.319 Sum_probs=43.1
Q ss_pred CcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 260 ~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
.++++.+++++.+|+..|.++++.++||+|+ + | +++|+||..|++++
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~--~-g---~l~Givt~~Dl~~~ 48 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS--D-D---FLEGILTLGDIQRF 48 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECC--C-C---eEEEEEEHHHHHHH
Confidence 4689999999999999999999999999985 3 5 79999999999987
No 159
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=97.76 E-value=5.1e-05 Score=60.15 Aligned_cols=54 Identities=17% Similarity=0.317 Sum_probs=45.2
Q ss_pred ccccccCCCCCeEEEec--chhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637 156 TVYELLPDSGKVTALDV--NLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (323)
Q Consensus 156 ~~~dvmp~s~~vv~vd~--~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~ 212 (323)
.+.++|. ....++.. ++++.+|+++|.++++..+||+|+ .++++|+||..|++.
T Consensus 58 ~v~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~-~~~~~Gvit~~di~~ 113 (114)
T cd04602 58 PLSEVMT--PREVLVVAPTGITLEEANEILRESKKGKLPIVND-DGELVALVTRSDLKK 113 (114)
T ss_pred CHHHhcC--CCceEEECCCCCCHHHHHHHHHhcCCCceeEECC-CCeEEEEEEHHHhhc
Confidence 4678884 44555655 999999999999999999999984 689999999999863
No 160
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.75 E-value=5.5e-05 Score=59.29 Aligned_cols=55 Identities=16% Similarity=0.332 Sum_probs=49.2
Q ss_pred cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHH
Q 020637 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI 211 (323)
Q Consensus 155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i 211 (323)
.+|.++| ..++.++++++++.+|++.|.+++...+||+|...++++|++|..|++
T Consensus 58 ~~v~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~ 112 (114)
T cd04613 58 VVASDIM--TKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLL 112 (114)
T ss_pred EEHHHhc--cCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhh
Confidence 6788888 567899999999999999999999999999983157999999999985
No 161
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=97.75 E-value=4.6e-05 Score=59.74 Aligned_cols=52 Identities=13% Similarity=0.201 Sum_probs=45.7
Q ss_pred ccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHH
Q 020637 156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI 211 (323)
Q Consensus 156 ~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i 211 (323)
.+.++| ..+.++..++++.+|+++|.+++...+||+|. .|+++|+||.+|++
T Consensus 58 ~~~~~~---~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~di~ 109 (111)
T cd04590 58 DLRDLL---RPPLFVPESTPLDDLLEEMRKERSHMAIVVDE-YGGTAGLVTLEDIL 109 (111)
T ss_pred CHHHHh---cCCeecCCCCcHHHHHHHHHhcCCcEEEEEEC-CCCEEEEeEHHHhh
Confidence 455655 35788999999999999999999999999995 68999999999985
No 162
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.75 E-value=4.7e-05 Score=61.02 Aligned_cols=55 Identities=22% Similarity=0.462 Sum_probs=48.6
Q ss_pred cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (323)
Q Consensus 155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~ 212 (323)
.++.++|. ..+++++.++++.+|++.|.+++...+||+|+ .++++|+||..|+++
T Consensus 70 ~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~~Gvit~~di~~ 124 (125)
T cd04631 70 EPVRSIMT--RNVITITPDDSIKDAAELMLEKRVGGLPVVDD-DGKLVGIVTERDLLK 124 (125)
T ss_pred cCHHHHhc--CCceEeCCCCcHHHHHHHHHHcCCceEEEEcC-CCcEEEEEEHHHhhc
Confidence 46777873 57899999999999999999999999999984 589999999999864
No 163
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=97.74 E-value=6e-05 Score=58.66 Aligned_cols=54 Identities=15% Similarity=0.470 Sum_probs=48.1
Q ss_pred cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHH
Q 020637 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI 211 (323)
Q Consensus 155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i 211 (323)
..+.++|. ..+.+++.++++.+|++.|.+++...+||+|+ +|+++|++|.+|++
T Consensus 54 ~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~-~g~~~Gvit~~~l~ 107 (109)
T cd04583 54 KSLEDIML--EDVFTVQPDASLRDVLGLVLKRGPKYVPVVDE-DGKLVGLITRSSLV 107 (109)
T ss_pred CcHhHhhc--CCceEECCCCcHHHHHHHHHHcCCceeeEECC-CCeEEEEEehHHhh
Confidence 35778884 57889999999999999999999999999995 68999999999985
No 164
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=97.74 E-value=5.9e-05 Score=58.81 Aligned_cols=55 Identities=22% Similarity=0.400 Sum_probs=45.9
Q ss_pred cccccccCCCCCeEEEec-chhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637 155 HTVYELLPDSGKVTALDV-NLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (323)
Q Consensus 155 ~~~~dvmp~s~~vv~vd~-~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~ 212 (323)
.++.++|. ...+.+.. ++++.+|+++|.+++...+||+|+ .++++|+||.+|++.
T Consensus 54 ~~v~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~dil~ 109 (110)
T cd04601 54 KPVSEVMT--PENLLTTVEGTSLEEALELLHEHKIEKLPVVDD-EGKLKGLITVKDIEK 109 (110)
T ss_pred CCHHHhcc--cCceEEecCCCCHHHHHHHHHHhCCCeeeEEcC-CCCEEEEEEhhhhhc
Confidence 45677774 34556666 999999999999999999999985 689999999999863
No 165
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.73 E-value=6.1e-05 Score=49.09 Aligned_cols=46 Identities=20% Similarity=0.436 Sum_probs=40.8
Q ss_pred cEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 261 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 261 ~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
++++.+++++.+++..|.+++++++||+++ + + +++|+++..++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~-~---~~~g~i~~~~l~~~ 47 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDE--E-G---RLVGIVTRRDIIKA 47 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECC--C-C---eEEEEEEHHHHHHh
Confidence 578899999999999999999999999985 2 4 79999999998764
No 166
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.72 E-value=5.6e-05 Score=59.24 Aligned_cols=54 Identities=19% Similarity=0.389 Sum_probs=48.2
Q ss_pred cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHH
Q 020637 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI 211 (323)
Q Consensus 155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i 211 (323)
..+.++|. ..+++++.+.++.+|+++|.+++...+||+|+ .++++|++|..|++
T Consensus 56 ~~v~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~dl~ 109 (111)
T cd04639 56 APVRGVMR--RDFPTVSPSATLDAVLRLMQQGGAPAVPVVDG-SGRLVGLVTLENVG 109 (111)
T ss_pred CcHHHHhc--CCCcEECCCCcHHHHHHHHHhcCCceeeEEcC-CCCEEEEEEHHHhh
Confidence 46788884 57889999999999999999999999999985 58999999999985
No 167
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=97.71 E-value=7.6e-05 Score=58.28 Aligned_cols=55 Identities=22% Similarity=0.410 Sum_probs=48.7
Q ss_pred cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (323)
Q Consensus 155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~ 212 (323)
..+.++| ...+.+++.++++.+|++.|.+++...+||+|. .++++|+||..|+++
T Consensus 56 ~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~ 110 (111)
T cd04612 56 VLVGDVM--TRDPVTASPDETLRDALKRMAERDIGRLPVVDD-SGRLVGIVSRSDLLR 110 (111)
T ss_pred cCHHHhc--cCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcC-CCCEEEEEEHHHhhh
Confidence 3577777 467899999999999999999999999999985 689999999999863
No 168
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=97.71 E-value=9.2e-05 Score=57.79 Aligned_cols=57 Identities=23% Similarity=0.401 Sum_probs=49.9
Q ss_pred cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637 153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (323)
Q Consensus 153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~ 212 (323)
....|.++| ...++++..+.++.+|++.|.+++...+||+|. .|+++|+||.+|+++
T Consensus 54 ~~~~v~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~di~~ 110 (111)
T cd04611 54 LQTPVGEVM--SSPLLTVPADTSLYDARQLMREHGIRHLVVVDD-DGELLGLLSQTDLLQ 110 (111)
T ss_pred CCcCHHHhc--CCCceEECCCCCHHHHHHHHHHcCCeEEEEECC-CCcEEEEEEhHHhhc
Confidence 346688888 457899999999999999999999999999985 689999999999863
No 169
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.70 E-value=7.5e-05 Score=59.55 Aligned_cols=57 Identities=25% Similarity=0.482 Sum_probs=49.6
Q ss_pred cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637 153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (323)
Q Consensus 153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~ 212 (323)
...++.++| ...+++++.++++.+|++.|.+++...+||+|+ .++++|++|..|++.
T Consensus 65 ~~~~v~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~dl~~ 121 (122)
T cd04803 65 RDVPVAEVM--KTDVLTVTPDTPLREAAEIMVENKIGCLPVVDD-KGTLVGIITRSDFLR 121 (122)
T ss_pred cCcCHHHhh--CCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcC-CCCEEEEEEHHHhhc
Confidence 455677888 457889999999999999999999999999985 579999999999863
No 170
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.70 E-value=0.00012 Score=57.43 Aligned_cols=55 Identities=22% Similarity=0.471 Sum_probs=48.3
Q ss_pred cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHH
Q 020637 153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI 211 (323)
Q Consensus 153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i 211 (323)
...+|.++|. ..+.++..++++.+|+++|.+++...+||+|+ . +++|++|..|++
T Consensus 56 ~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~Gvi~~~di~ 110 (112)
T cd04802 56 REVPVGEVMS--TPLITIDPNASLNEAAKLMAKHGIKRLPVVDD-D-ELVGIVTTTDIV 110 (112)
T ss_pred ccCCHHHhcC--CCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC-C-EEEEEEEhhhhh
Confidence 3457888884 56889999999999999999999999999985 3 999999999985
No 171
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=97.70 E-value=6.9e-05 Score=58.83 Aligned_cols=55 Identities=25% Similarity=0.450 Sum_probs=48.4
Q ss_pred cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (323)
Q Consensus 155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~ 212 (323)
.++.++| .....++.+++++.+|+++|.+++...+||+|+ .++++|+||..|+++
T Consensus 59 ~~v~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~iG~it~~di~~ 113 (114)
T cd04604 59 LPVADVM--TRNPKTIDPDALAAEALELMEENKITALPVVDD-NGRPVGVLHIHDLLR 113 (114)
T ss_pred CCHHHhh--ccCCeEECCCCcHHHHHHHHHHcCCCEEEEECC-CCCEEEEEEHHHhhc
Confidence 3577888 356788999999999999999999999999985 689999999999863
No 172
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.70 E-value=6.9e-05 Score=75.13 Aligned_cols=58 Identities=19% Similarity=0.318 Sum_probs=52.0
Q ss_pred cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (323)
Q Consensus 155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~ 215 (323)
..+.++| +.+++++.+++++.+|+++|.++++..+||+|+ +++++|+||.+||++...
T Consensus 146 ~~V~dIM--t~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~-~g~LvGIIT~~DLl~~~~ 203 (475)
T TIGR01303 146 TQVRDIM--STDLVTAPADTEPRKAFDLLEHAPRDVAPLVDA-DGTLAGILTRTGALRATI 203 (475)
T ss_pred CCHHHHc--cCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHh
Confidence 4588899 478999999999999999999999999999995 689999999999987544
No 173
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.68 E-value=8.8e-05 Score=58.01 Aligned_cols=53 Identities=15% Similarity=0.355 Sum_probs=47.3
Q ss_pred ccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHH
Q 020637 156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI 211 (323)
Q Consensus 156 ~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i 211 (323)
.+.++| ..++.++..++++.+|+++|.+++...+||+|+ .|+++|+||..|++
T Consensus 56 ~~~~~~--~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~G~v~~~di~ 108 (110)
T cd04605 56 SVEDIM--TRNVITATPDEPIDVAARKMERHNISALPVVDA-ENRVIGIITSEDIS 108 (110)
T ss_pred CHHHhc--CCCCeEECCCCcHHHHHHHHHHhCCCEEeEECC-CCcEEEEEEHHHhh
Confidence 377777 357889999999999999999999999999985 68999999999985
No 174
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=97.68 E-value=7.8e-05 Score=58.31 Aligned_cols=54 Identities=20% Similarity=0.398 Sum_probs=48.2
Q ss_pred cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHH
Q 020637 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI 211 (323)
Q Consensus 155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i 211 (323)
.+|.++|. ..+.++.++.++.+|++.|.++++..+||+|. .++++|+||..|++
T Consensus 55 ~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~i~~~dl~ 108 (110)
T cd04588 55 AKVKDVMT--KDVITIDEDEQLYDAIRLMNKHNVGRLIVTDD-EGRPVGIITRTDIL 108 (110)
T ss_pred cCHHHHhc--CCceEECCCCCHHHHHHHHHhcCCCEEEEECC-CCCEEEEEEhHHhh
Confidence 45777883 68899999999999999999999999999985 58999999999986
No 175
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.67 E-value=7.3e-05 Score=60.41 Aligned_cols=56 Identities=21% Similarity=0.283 Sum_probs=49.1
Q ss_pred ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeC-CCCeEEEEEehHHHH
Q 020637 154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDD-FKGRFVGVLSALDFI 211 (323)
Q Consensus 154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~-~~~~~vGilT~~D~i 211 (323)
...++++|. .+++++.++.++.+|+++|.++++..+||.+. +.++++|+||..|++
T Consensus 70 ~~~~~~~~~--~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~ 126 (128)
T cd04632 70 DLPVYDAMS--SPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVL 126 (128)
T ss_pred cCcHHHHhc--CCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhh
Confidence 456889994 67999999999999999999999999999852 468999999999986
No 176
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=97.67 E-value=0.00039 Score=54.13 Aligned_cols=54 Identities=24% Similarity=0.361 Sum_probs=44.6
Q ss_pred eeEEEEEeeC---CCceEEEEecc---CCCCCCCCCCCCCCCCCeEEEEEEeCCc-eEEEEEEE
Q 020637 20 LVPVRFIWPN---GGRRVSLSGSF---TRWSEPMPMSPSEGCPAVFQIICRLPPG-HHQYKFYV 76 (323)
Q Consensus 20 ~~~v~F~w~~---~~~~V~l~Gsf---~~W~~~~~m~~~~~~~g~~~~~~~LppG-~y~YkFiV 76 (323)
++.++|+.++ -|++++|+|+- -+|++..+|... .+.|++.+.+|++ .++|||++
T Consensus 1 ~~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~~---~~~W~~~~~l~~~~~ieyKy~~ 61 (92)
T cd05818 1 KVKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNWT---ENGWVCDLELDGGELVEYKFVI 61 (92)
T ss_pred CEEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCccccC---CCCEEEEEEeCCCCcEEEEEEE
Confidence 3678888875 48999999986 489987788764 4579999999997 59999998
No 177
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.66 E-value=8.3e-05 Score=70.58 Aligned_cols=55 Identities=22% Similarity=0.375 Sum_probs=49.5
Q ss_pred cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (323)
Q Consensus 155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~ 212 (323)
.++.|+| ...++++.++.++.+|++.|.++++..+||+|+ +++++|+||..|+++
T Consensus 263 ~~v~~im--~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~lvGvIt~~di~~ 317 (321)
T PRK11543 263 TPVNEAM--TRGGTTLQAQSRAIDAKEILMKRKITAAPVVDE-NGKLTGAINLQDFYQ 317 (321)
T ss_pred CcHHHhc--CCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHh
Confidence 4578999 567899999999999999999999999999995 679999999999964
No 178
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.64 E-value=0.0001 Score=74.52 Aligned_cols=62 Identities=15% Similarity=0.255 Sum_probs=54.7
Q ss_pred ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHh
Q 020637 154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE 216 (323)
Q Consensus 154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~ 216 (323)
..++.++|.....++++.+++++.+|+++|.++++..+||+|+ .++++|+||.+|+++.+.+
T Consensus 162 ~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~-~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 162 ETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE-DGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred CCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHhhC
Confidence 4568899954444999999999999999999999999999995 6899999999999987765
No 179
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=97.64 E-value=0.00011 Score=57.58 Aligned_cols=56 Identities=21% Similarity=0.278 Sum_probs=48.9
Q ss_pred cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637 153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (323)
Q Consensus 153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~ 212 (323)
...++.++| ..++.++.+++++.+++++|.+++...+||+|. ++++|+||..|++.
T Consensus 55 ~~~~i~~~~--~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~dl~~ 110 (111)
T cd04589 55 SSTPVGEIA--TFPLITVDPDDFLFNALLLMTRHRIHRVVVREG--GEVVGVLEQTDLLS 110 (111)
T ss_pred CCCCHHHHh--CCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC--CEEEEEEEhHHhhc
Confidence 345688888 357889999999999999999999999999983 79999999999863
No 180
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.63 E-value=9.8e-05 Score=57.94 Aligned_cols=54 Identities=28% Similarity=0.421 Sum_probs=47.8
Q ss_pred ccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637 156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (323)
Q Consensus 156 ~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~ 212 (323)
++.++|. ....++..++++.+|+++|.+++...+||+|+ .++++|++|..|+++
T Consensus 59 ~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~ 112 (113)
T cd04622 59 TVGDVMT--RGVVTVTEDDDVDEAARLMREHQVRRLPVVDD-DGRLVGIVSLGDLAR 112 (113)
T ss_pred CHHHhcc--CCccEECCCCCHHHHHHHHHHcCCCeeeEECC-CCcEEEEEEHHHhhc
Confidence 4778884 56888999999999999999999999999984 589999999999853
No 181
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.62 E-value=0.0001 Score=58.08 Aligned_cols=47 Identities=19% Similarity=0.327 Sum_probs=42.6
Q ss_pred CcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 260 ~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
.++++.+++++.+|+.+|.+++++++||+|+ +| +++|+++..|++++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~ 48 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK---EG---KYVGTISLTDILWK 48 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECC---CC---cEEEEEeHHHHHHH
Confidence 4689999999999999999999999999985 34 79999999999876
No 182
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=97.62 E-value=0.00012 Score=57.04 Aligned_cols=53 Identities=15% Similarity=0.347 Sum_probs=46.5
Q ss_pred ccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637 156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (323)
Q Consensus 156 ~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~ 212 (323)
++.++|. ...++++.+.++.+|++.|.+++...+||+| +++++|++|..|++.
T Consensus 51 ~~~~~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~--~~~~iGvit~~dl~~ 103 (104)
T cd04594 51 DVVDYIV--RGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD--DGKFKGIVTLDSILD 103 (104)
T ss_pred chhhhhh--cCCcEEcCCCCHHHHHHHHHHcCcceEEEEE--CCEEEEEEEHHHhhc
Confidence 4667774 5678999999999999999999999999998 379999999999863
No 183
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=97.60 E-value=0.00038 Score=54.93 Aligned_cols=68 Identities=26% Similarity=0.433 Sum_probs=45.6
Q ss_pred EEEEEe-eCCCceEEEEeccCCCCC-CCCCCCCCCCCCeEEEEEE-eCCce-EEEEEEEc-Ce--eecCCCCCeee
Q 020637 22 PVRFIW-PNGGRRVSLSGSFTRWSE-PMPMSPSEGCPAVFQIICR-LPPGH-HQYKFYVD-GE--WRHDENQPHVS 90 (323)
Q Consensus 22 ~v~F~w-~~~~~~V~l~Gsf~~W~~-~~~m~~~~~~~g~~~~~~~-LppG~-y~YkFiVD-G~--w~~d~~~p~~~ 90 (323)
.++|+. .++|++|.|.++|++|.. ..+|.+.+ ..|.|.+.++ +++|. |.|++..+ |. .+.||....+.
T Consensus 22 ~~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~~-~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~~~~DPYa~~~~ 96 (106)
T cd02855 22 GVRFAVWAPNARRVSVVGDFNGWDGRRHPMRRRG-DSGVWELFIPGLGEGELYKYEILGADGHLPLKADPYAFYSE 96 (106)
T ss_pred CEEEEEECCCCCEEEEEEECCCCCCcceecEECC-CCCEEEEEECCCCCCCEEEEEEECCCCCEEEeeCCCceeeE
Confidence 366765 568999999999999964 35898754 2799999886 66664 44444444 33 34566554443
No 184
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.59 E-value=0.00013 Score=57.19 Aligned_cols=54 Identities=22% Similarity=0.379 Sum_probs=47.7
Q ss_pred cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHH
Q 020637 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI 211 (323)
Q Consensus 155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i 211 (323)
..+.++|. ..++++..++++.+|++.|.++++..+||+|. .|+++|+||..|++
T Consensus 57 ~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~g~~~Gilt~~dl~ 110 (112)
T cd04624 57 TPVSEIMT--RDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDK-GGELVGVISIRDLV 110 (112)
T ss_pred cCHHHhcc--CCCEEECCCCcHHHHHHHHHHcCccEEEEEcC-CCcEEEEEEHHHhc
Confidence 45778884 56889999999999999999999999999985 68999999999985
No 185
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=97.58 E-value=0.00014 Score=57.69 Aligned_cols=56 Identities=23% Similarity=0.416 Sum_probs=48.7
Q ss_pred cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637 153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (323)
Q Consensus 153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~ 212 (323)
...++.++| ...+++++.++++.+|+++|.+++...+||+|. ++++|+||..|+++
T Consensus 65 ~~~~v~~~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~--~~~~Gvv~~~di~~ 120 (121)
T cd04584 65 LKMPVKEIM--TKDVITVHPLDTVEEAALLMREHRIGCLPVVED--GRLVGIITETDLLR 120 (121)
T ss_pred cCcCHHHHh--hCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHhhc
Confidence 345677777 457899999999999999999999999999984 79999999999863
No 186
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.57 E-value=0.00014 Score=58.07 Aligned_cols=55 Identities=16% Similarity=0.430 Sum_probs=48.5
Q ss_pred cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (323)
Q Consensus 155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~ 212 (323)
..+.++| ...+++++.++++.+|++.|.+++...+||+|+ .++++|++|..|++.
T Consensus 67 ~~~~~~~--~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~-~~~~~Gvit~~dll~ 121 (122)
T cd04637 67 RRAHQIM--TRDPITVSPDTPVDEASKLLLENSISCLPVVDE-NGQLIGIITWKDLLK 121 (122)
T ss_pred hHHHHhh--cCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECC-CCCEEEEEEHHHhhh
Confidence 3577888 457899999999999999999999999999985 689999999999863
No 187
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=97.53 E-value=0.00017 Score=74.11 Aligned_cols=59 Identities=12% Similarity=0.139 Sum_probs=52.0
Q ss_pred cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCC-CeEEEEEehHHHHHHHH
Q 020637 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFK-GRFVGVLSALDFILILR 215 (323)
Q Consensus 155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~-~~~vGilT~~D~i~~l~ 215 (323)
.++.|+| +.+++++++++++.+|++.|.++++..+||+|++. ++++|+||.+|+++.+.
T Consensus 512 ~~v~dim--~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~ 571 (574)
T PRK01862 512 KTAADYA--HTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR 571 (574)
T ss_pred chHHHhc--cCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence 5688888 56789999999999999999999999999998643 58999999999987664
No 188
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=97.53 E-value=0.00031 Score=57.41 Aligned_cols=56 Identities=25% Similarity=0.525 Sum_probs=44.9
Q ss_pred EEEEEeeC----CCceEEEEec---cCCCCCC--CCCCCCCCCCCeEEEEEEeCCc-eEEEEEEEc
Q 020637 22 PVRFIWPN----GGRRVSLSGS---FTRWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYVD 77 (323)
Q Consensus 22 ~v~F~w~~----~~~~V~l~Gs---f~~W~~~--~~m~~~~~~~g~~~~~~~LppG-~y~YkFiVD 77 (323)
.|+|.... .+++|+|+|+ +.+|++. .+|++.....+.|++++.||++ .++|||++.
T Consensus 2 ~v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~~~~veYkY~~~ 67 (120)
T cd05814 2 RVTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPRGVDFQYRYFVA 67 (120)
T ss_pred eEEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECCCCeEEEEEEEE
Confidence 57788764 4789999999 8899854 5888752125789999999998 799999994
No 189
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=97.52 E-value=0.0002 Score=58.20 Aligned_cols=48 Identities=19% Similarity=0.343 Sum_probs=42.9
Q ss_pred CCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 259 ~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
++++++.+++++.+|+..|.++++.++||+|+ +| +++|+||..|+++.
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~---~~---~~~Gii~~~dl~~~ 49 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDE---SG---KILGMVTLGNLLSS 49 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHHH
Confidence 45789999999999999999999999999985 34 79999999999864
No 190
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.50 E-value=0.00034 Score=55.49 Aligned_cols=53 Identities=21% Similarity=0.401 Sum_probs=40.4
Q ss_pred EEEE-eeCCCceEEEEeccCCCC--CCCCCCCCCCCCCeEEEEEE-eCCceEEEEEEEcCe
Q 020637 23 VRFI-WPNGGRRVSLSGSFTRWS--EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE 79 (323)
Q Consensus 23 v~F~-w~~~~~~V~l~Gsf~~W~--~~~~m~~~~~~~g~~~~~~~-LppG~y~YkFiVDG~ 79 (323)
++|+ |.+.|++|.|.. |++|. ..++|++.+ +|+|.+.+. +.+|. .|+|.|||.
T Consensus 11 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~--~GvW~~~v~~~~~g~-~Y~y~i~g~ 67 (103)
T cd02856 11 CNFAVHSENATRIELCL-FDEDGSETRLPLTEEY--GGVWHGFLPGIKAGQ-RYGFRVHGP 67 (103)
T ss_pred eEEEEECCCCCEEEEEE-EeCCCCEEEEEccccc--CCEEEEEECCCCCCC-EEEEEECCc
Confidence 5674 566799999998 66664 236898764 799999985 56665 799999994
No 191
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=97.50 E-value=0.00075 Score=53.22 Aligned_cols=57 Identities=23% Similarity=0.406 Sum_probs=43.0
Q ss_pred eeEEEEEeeC----CCceEEEEe---ccCCCCCCC-CCCCCC-CCCCeEEEEEEeCCce-EEEEEEE
Q 020637 20 LVPVRFIWPN----GGRRVSLSG---SFTRWSEPM-PMSPSE-GCPAVFQIICRLPPGH-HQYKFYV 76 (323)
Q Consensus 20 ~~~v~F~w~~----~~~~V~l~G---sf~~W~~~~-~m~~~~-~~~g~~~~~~~LppG~-y~YkFiV 76 (323)
.++|+|.... .+++|+|+| ++.+|+... +|.... ...+.|++++.||+|. ++|||++
T Consensus 2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp~~~~veyKyv~ 68 (99)
T cd05809 2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLPAGRNIEFKAIK 68 (99)
T ss_pred ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEecCCCcEEEEEEE
Confidence 4799999842 478999999 567998642 343221 1257899999999984 9999999
No 192
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=97.47 E-value=0.00079 Score=53.54 Aligned_cols=55 Identities=27% Similarity=0.494 Sum_probs=43.7
Q ss_pred eeEEEEEeeC-----CCceEEEEeccC---CCCCCC-----CCCCCCCCCCeEEEEEEeCCc-eEEEEEEE
Q 020637 20 LVPVRFIWPN-----GGRRVSLSGSFT---RWSEPM-----PMSPSEGCPAVFQIICRLPPG-HHQYKFYV 76 (323)
Q Consensus 20 ~~~v~F~w~~-----~~~~V~l~Gsf~---~W~~~~-----~m~~~~~~~g~~~~~~~LppG-~y~YkFiV 76 (323)
.+||+|+... .|++++|+|+-. +|++.. +|... ....|.+++.||.| ..+|||++
T Consensus 2 ~~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~~--~~~~W~~~~~lp~~~~veyK~v~ 70 (103)
T cd05820 2 QIPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLCP--NWPDWFVVASVPAGTYIEFKFLK 70 (103)
T ss_pred cccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhccccccccccC--CCCCEEEEEEcCCCCcEEEEEEE
Confidence 4899999962 378999999865 898732 66543 25689999999998 49999998
No 193
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=97.43 E-value=0.00023 Score=71.19 Aligned_cols=57 Identities=19% Similarity=0.375 Sum_probs=52.2
Q ss_pred cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHH
Q 020637 153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILI 213 (323)
Q Consensus 153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~ 213 (323)
...+++++| ..++++++..+.+-+|.-+|.+++|+++||.+ +|+.+||||.+||+..
T Consensus 212 ~~~~V~evm--T~p~~svd~~~~~feAml~m~r~~I~hl~V~e--~gq~~Gilt~~dIl~l 268 (610)
T COG2905 212 KTQKVSEVM--TSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE--DGQPLGILTLTDILRL 268 (610)
T ss_pred cccchhhhh--ccCceeecCcchHHHHHHHHHHhCCceeeeec--CCeeeEEeeHHHHHHh
Confidence 457799999 58999999999999999999999999999996 6899999999999764
No 194
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.42 E-value=0.00025 Score=71.54 Aligned_cols=61 Identities=21% Similarity=0.290 Sum_probs=52.7
Q ss_pred ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637 154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (323)
Q Consensus 154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~ 215 (323)
..++.|+|..-.+++++.+++++.+|+++|.++++..+||+|+ +++++|+||.+|+++...
T Consensus 158 ~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~-~g~liGIIT~~DIl~~~~ 218 (495)
T PTZ00314 158 STPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVND-NGELVALVSRSDLKKNRG 218 (495)
T ss_pred CCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEehHhhhccc
Confidence 3568899943237999999999999999999999999999995 789999999999987544
No 195
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=97.42 E-value=0.00058 Score=53.32 Aligned_cols=54 Identities=20% Similarity=0.409 Sum_probs=43.5
Q ss_pred eEEEEEeeC----CCceEEEEeccC---CCCCCCCCCCCCCCCCeEEEEEEeCCce-EEEEEEE
Q 020637 21 VPVRFIWPN----GGRRVSLSGSFT---RWSEPMPMSPSEGCPAVFQIICRLPPGH-HQYKFYV 76 (323)
Q Consensus 21 ~~v~F~w~~----~~~~V~l~Gsf~---~W~~~~~m~~~~~~~g~~~~~~~LppG~-y~YkFiV 76 (323)
|+|+|+..+ +++.++|+|+-. +|+...+|...+ .+.|++++.||++. ++|||++
T Consensus 1 v~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~~--~~~W~~~v~lp~~~~ieYky~~ 62 (95)
T cd05813 1 VNVTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYVK--DGFWSASVSLPVDTHVEWKFVL 62 (95)
T ss_pred CeEEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCCC--CCCEEEEEEecCCCcEEEEEEE
Confidence 468888853 357788999854 798878997654 57899999999985 9999998
No 196
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=97.41 E-value=0.00037 Score=54.76 Aligned_cols=49 Identities=16% Similarity=0.373 Sum_probs=43.8
Q ss_pred ccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637 160 LLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (323)
Q Consensus 160 vmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~ 212 (323)
+| ..+..+++.++++.+|+++|.++++..+||++ .|+++|+||..|+++
T Consensus 56 ~m--~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~--~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YI--DPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD--EGRLVGIITRKDLLK 104 (105)
T ss_pred hc--cCCCceECCCCcHHHHHHHHHHcCCCEEEEEE--CCeEEEEEEhhhhhc
Confidence 56 35788999999999999999999999999996 579999999999863
No 197
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=97.39 E-value=0.00029 Score=54.71 Aligned_cols=46 Identities=20% Similarity=0.414 Sum_probs=42.0
Q ss_pred CcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 260 ~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
+++++.+++++.+|+..|.+++++++||+|+ | +++|++|..|++++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----~---~~~G~v~~~dl~~~ 47 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD----G---RVVGSIDESDLLDA 47 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC----C---eeEEEEeHHHHHHH
Confidence 4688999999999999999999999999983 4 79999999999887
No 198
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.39 E-value=0.00049 Score=53.50 Aligned_cols=52 Identities=25% Similarity=0.477 Sum_probs=45.5
Q ss_pred ccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHH
Q 020637 156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI 211 (323)
Q Consensus 156 ~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i 211 (323)
.+.++| ...++++..++++.+|+++|.+++...+||+|. ++++|++|..|++
T Consensus 53 ~~~~~~--~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~--~~~~G~it~~d~~ 104 (106)
T cd04638 53 QLALLM--TRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD--GKLVGIVTVADIV 104 (106)
T ss_pred hHHHHh--cCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhh
Confidence 456667 356888999999999999999999999999983 6999999999985
No 199
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.37 E-value=0.00039 Score=55.06 Aligned_cols=57 Identities=11% Similarity=0.214 Sum_probs=47.7
Q ss_pred cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCC---eeeeEeCCCCeEEEEEehHHHHH
Q 020637 153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLP---MVPLWDDFKGRFVGVLSALDFIL 212 (323)
Q Consensus 153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~---~lPV~d~~~~~~vGilT~~D~i~ 212 (323)
...++.++| ....+++..+.++.+|+++|.+++.. .+||+++ .|+++|+||..|+++
T Consensus 59 ~~~~v~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-~~~~~Gvvs~~di~~ 118 (119)
T cd04598 59 GKKPVSEVM--DPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTE-EGRYLGIGTVKDLLR 118 (119)
T ss_pred cCCcHHHhc--CCCcEEecCCCCHHHHHHHHHcCCcccccccEEEee-CCeEEEEEEHHHHhc
Confidence 456788999 45789999999999999999999864 4578885 689999999999863
No 200
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=97.35 E-value=0.00027 Score=66.60 Aligned_cols=56 Identities=14% Similarity=0.239 Sum_probs=49.2
Q ss_pred ccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637 156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (323)
Q Consensus 156 ~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~ 215 (323)
++.++| ++++++..++++.+|++.|.+++...+||+|+ .|.++|+||..|++..+.
T Consensus 134 ~l~~l~---r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe-~G~viGiVTleDIle~iv 189 (292)
T PRK15094 134 SMDKVL---RQAVVVPESKRVDRMLKEFRSQRYHMAIVIDE-FGGVSGLVTIEDILELIV 189 (292)
T ss_pred CHHHHc---CCCcCcCCCCcHHHHHHHHHhcCCEEEEEEeC-CCCEEEEeEHHHHHHHHh
Confidence 356777 46778999999999999999999999999995 688999999999988664
No 201
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=97.34 E-value=0.00025 Score=69.98 Aligned_cols=55 Identities=16% Similarity=0.233 Sum_probs=48.7
Q ss_pred CCCCCCC--CcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 253 NGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 253 ~~~im~~--~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
+.++|++ .++++..++++.++++.|.++++.|+||.++ +.+ +++|||+.+|++.+
T Consensus 193 v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~--~~d---~ivGiv~~kDll~~ 249 (408)
T TIGR03520 193 TKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKE--TID---NITGVLYIKDLLPH 249 (408)
T ss_pred eeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcC--CCC---ceEEEEEHHHHHhH
Confidence 4568986 7999999999999999999999999999985 223 79999999999976
No 202
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=97.34 E-value=0.00046 Score=72.45 Aligned_cols=64 Identities=23% Similarity=0.426 Sum_probs=47.3
Q ss_pred EEEEE-eeCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEEe-------CCceEEEEEEEc---Ce--eecCCCCC
Q 020637 22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRL-------PPGHHQYKFYVD---GE--WRHDENQP 87 (323)
Q Consensus 22 ~v~F~-w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~g~~~~~~~L-------ppG~y~YkFiVD---G~--w~~d~~~p 87 (323)
.++|+ |.+.|++|+|+|+||+|+.. .+|++.+ .|+|++.++- +.| ..|||.|. |. .+.||-..
T Consensus 115 g~~FrvWAP~A~~V~LvGdFN~W~~~~~~M~~~~--~GvWe~~ip~~~g~~~~~~G-~~Yky~i~~~~g~~~~r~dpya~ 191 (758)
T PLN02447 115 GITYREWAPGAKAAALIGDFNNWNPNAHWMTKNE--FGVWEIFLPDADGSPAIPHG-SRVKIRMETPDGRWVDRIPAWIK 191 (758)
T ss_pred CEEEEEECCCCCEEEEEEecCCCCCCccCceeCC--CCEEEEEECCccccccCCCC-CEEEEEEEeCCCcEEeecCchHh
Confidence 45665 57789999999999999874 6999865 7999999874 334 36777773 54 46677654
Q ss_pred e
Q 020637 88 H 88 (323)
Q Consensus 88 ~ 88 (323)
.
T Consensus 192 ~ 192 (758)
T PLN02447 192 Y 192 (758)
T ss_pred e
Confidence 3
No 203
>PRK12313 glycogen branching enzyme; Provisional
Probab=97.34 E-value=0.00061 Score=70.88 Aligned_cols=67 Identities=21% Similarity=0.282 Sum_probs=49.0
Q ss_pred EEEEEe-eCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEE-eCCc-eEEEEEEE-cCee--ecCCCCCeee
Q 020637 22 PVRFIW-PNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPG-HHQYKFYV-DGEW--RHDENQPHVS 90 (323)
Q Consensus 22 ~v~F~w-~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~g~~~~~~~-LppG-~y~YkFiV-DG~w--~~d~~~p~~~ 90 (323)
.|+|+. .+.|++|+|+|+||+|.+. .+|.+.. .|+|+++++ +++| .|.|++.. +|.| ..||......
T Consensus 39 gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~~--~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPya~~~~ 112 (633)
T PRK12313 39 GTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRRE--SGVWEGFIPGAKEGQLYKYHISRQDGYQVEKIDPFAFYFE 112 (633)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCcccccccccC--CCEEEEEeCCCCCCCEEEEEEECCCCeEEecCCCceEEEe
Confidence 678876 4689999999999999864 5898864 799999998 4444 57777654 5665 4566554443
No 204
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.30 E-value=0.00058 Score=56.72 Aligned_cols=54 Identities=22% Similarity=0.495 Sum_probs=48.2
Q ss_pred ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHH
Q 020637 154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI 211 (323)
Q Consensus 154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i 211 (323)
..++.++| ...++++..++++.+|++.|.+++...+||++. ++++|++|..|++
T Consensus 88 ~~~v~~~~--~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl~ 141 (143)
T cd04634 88 KMKVRDIM--TKKVITISPDASIEDAAELMVRHKIKRLPVVED--GRLVGIVTRGDII 141 (143)
T ss_pred cCCHHHHc--CCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhh
Confidence 45678888 457899999999999999999999999999984 7999999999985
No 205
>PRK12568 glycogen branching enzyme; Provisional
Probab=97.27 E-value=0.00064 Score=71.21 Aligned_cols=65 Identities=25% Similarity=0.501 Sum_probs=49.6
Q ss_pred EEEEEe-eCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEE-eCCceEEEEEEE---cCee--ecCCCCCee
Q 020637 22 PVRFIW-PNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYV---DGEW--RHDENQPHV 89 (323)
Q Consensus 22 ~v~F~w-~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~g~~~~~~~-LppG~y~YkFiV---DG~w--~~d~~~p~~ 89 (323)
-|+|+. .+.|++|.|+|+||+|+.. .+|.+.. .|+|++.++ +.+| ..|||.| ||.+ +.||.....
T Consensus 139 Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~~--~GVWelfipg~~~G-~~YKYeI~~~~G~~~~k~DPYA~~~ 211 (730)
T PRK12568 139 GVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQRI--GGFWELFLPRVEAG-ARYKYAITAADGRVLLKADPVARQT 211 (730)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCccceecccCC--CCEEEEEECCCCCC-CEEEEEEEcCCCeEeecCCCcceEe
Confidence 568865 5689999999999999864 6898753 899999986 6777 4577776 7865 467766543
No 206
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=97.26 E-value=0.00054 Score=52.61 Aligned_cols=53 Identities=25% Similarity=0.555 Sum_probs=46.4
Q ss_pred cccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637 157 VYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (323)
Q Consensus 157 ~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~ 212 (323)
+.++| ...++++..+.++.+|++.|.+++...+||+|+ .++++|++|..|+++
T Consensus 60 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~i~~~dl~~ 112 (113)
T cd02205 60 VGDVM--TRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDD-EGRLVGIVTRSDILR 112 (113)
T ss_pred HHHHh--cCCceecCCCcCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEHHHhhc
Confidence 55667 457888899999999999999999999999996 589999999999863
No 207
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.26 E-value=0.0009 Score=67.72 Aligned_cols=135 Identities=8% Similarity=0.062 Sum_probs=90.6
Q ss_pred CeEEEecc-hhHHHHHHHHHHCCCCeeeeE-eCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHH
Q 020637 166 KVTALDVN-LAVKQAFHVLYEQGLPMVPLW-DDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQ 243 (323)
Q Consensus 166 ~vv~vd~~-~~v~~A~~~l~~~~i~~lPV~-d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~ 243 (323)
.++++..+ .++.+.-.+|.+....+.||+ +++.++++|++..+|+.-.+.......+....... ......+....
T Consensus 557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~--~f~~~~~~~~~- 633 (696)
T KOG0475|consen 557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSI--YFNDPSPSAVA- 633 (696)
T ss_pred hheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceeccc--ccCCCCccccC-
Confidence 34444444 789999999999999999988 44568999999999998655433221110000000 00000000000
Q ss_pred hhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 244 LNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 244 ~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
.... .....++|.-.++++...++..-++.++-+-+++.+-|..+ | +|+|+||.+|+|++
T Consensus 634 -~~~~-~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~~----G---~l~Giitkkd~l~~ 693 (696)
T KOG0475|consen 634 -GIPS-RLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTKN----G---ILLGIITKKDCLRH 693 (696)
T ss_pred -CCCC-CcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEccC----C---eeEeeeehHHHHHh
Confidence 0000 11123478888899999999999999999999999998853 6 89999999999987
No 208
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=97.18 E-value=0.00046 Score=68.73 Aligned_cols=54 Identities=15% Similarity=0.244 Sum_probs=48.4
Q ss_pred CCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 253 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 253 ~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
+.++|.++++++.+++++.+++..|.++++.++||+|+ ++ +++||||..||+++
T Consensus 337 v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~ 390 (454)
T TIGR01137 337 VKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTE---AG---KVLGSVTLRELLSA 390 (454)
T ss_pred HHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEHHHHHHH
Confidence 34589999999999999999999999999999999985 34 79999999999874
No 209
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=97.16 E-value=0.001 Score=63.23 Aligned_cols=66 Identities=14% Similarity=0.338 Sum_probs=57.5
Q ss_pred cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCC
Q 020637 153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNG 221 (323)
Q Consensus 153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~ 221 (323)
.+.+.--+| ++..+++.+.+++..+.+.|.-.+|..+||+|+ ..+++||+|.+|+++.|+.....+
T Consensus 247 ~~t~ieKVM--tknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~-n~~llGiitR~dvlk~lq~~q~qp 312 (432)
T COG4109 247 PSTTIEKVM--TKNPITVRAKTSVASVAQMMIWEGIEMLPVVDS-NNTLLGIITRQDVLKSLQMIQRQP 312 (432)
T ss_pred CCccHHHHh--ccCCeeecccchHHHHHHHHHhccceeeeEEcC-CceEEEEEEHHHHHHHHHHhccCC
Confidence 345566678 577899999999999999999999999999996 689999999999999998776554
No 210
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=97.14 E-value=0.0004 Score=64.04 Aligned_cols=54 Identities=11% Similarity=0.189 Sum_probs=47.8
Q ss_pred CCCCCCCC-cEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 253 NGRPCPRP-LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 253 ~~~im~~~-~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
++++|.++ ++++.+++++.+|++.|.+.++.++||+|+ + | +++|++|..|++++
T Consensus 157 v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~--~-g---~~~Givt~~dl~~~ 211 (268)
T TIGR00393 157 VKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE--N-N---QLVGVFTDGDLRRA 211 (268)
T ss_pred HHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC--C-C---CEEEEEEcHHHHHH
Confidence 34578888 999999999999999999999999999985 3 5 79999999999875
No 211
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=97.13 E-value=0.0023 Score=50.83 Aligned_cols=59 Identities=25% Similarity=0.501 Sum_probs=45.3
Q ss_pred CeeeEEEEEeeC---CCceEEEEeccC---CCCCC--CCCCCCC--CCCCeEEEEEEeCCce-EEEEEEE
Q 020637 18 SILVPVRFIWPN---GGRRVSLSGSFT---RWSEP--MPMSPSE--GCPAVFQIICRLPPGH-HQYKFYV 76 (323)
Q Consensus 18 ~~~~~v~F~w~~---~~~~V~l~Gsf~---~W~~~--~~m~~~~--~~~g~~~~~~~LppG~-y~YkFiV 76 (323)
+..++|+|...+ .|+.|+|+|+-. +|++. .+|.... ...+.|++++.||++. ++|||++
T Consensus 4 ~~~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~~~~veYKy~~ 73 (106)
T cd05811 4 ATTVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPAGTSFEYKFIR 73 (106)
T ss_pred CCEEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCCCCcEEEEEEE
Confidence 356889998864 489999999865 79864 5786431 1246899999999985 9999997
No 212
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.13 E-value=0.0015 Score=53.06 Aligned_cols=60 Identities=25% Similarity=0.491 Sum_probs=43.6
Q ss_pred EEEE-eeCCCceEEEEeccCCCC---C--CCCCCCCC-CCCCeEEEEEE-eCCceEEEEEEEcCeeecCC
Q 020637 23 VRFI-WPNGGRRVSLSGSFTRWS---E--PMPMSPSE-GCPAVFQIICR-LPPGHHQYKFYVDGEWRHDE 84 (323)
Q Consensus 23 v~F~-w~~~~~~V~l~Gsf~~W~---~--~~~m~~~~-~~~g~~~~~~~-LppG~y~YkFiVDG~w~~d~ 84 (323)
++|+ |.+.|++|.|.. |++|. + .++|.+.+ +..|+|.+.+. +.+|. .|+|.|+|.|..++
T Consensus 9 ~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~~p~~ 76 (119)
T cd02852 9 VNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLKPGQ-LYGYRVDGPFEPEQ 76 (119)
T ss_pred EEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCCEEEEEECCCCCCC-EEEEEECCCCCCCc
Confidence 6675 567899999999 88886 2 24776543 23589999986 67776 79999999754443
No 213
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=97.11 E-value=0.00071 Score=67.59 Aligned_cols=60 Identities=22% Similarity=0.425 Sum_probs=52.6
Q ss_pred ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637 154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (323)
Q Consensus 154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~ 215 (323)
..++.++|.. .+++++..++++.+|+++|.++++..+||+|+ .|+++|+||..|+++.+.
T Consensus 142 ~~~V~dvm~~-~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe-~G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 142 GKPVSEVMTR-EEVITVPEGIDLEEALKVLHEHRIEKLPVVDK-NGELVGLITMKDIVKRRK 201 (450)
T ss_pred CCCHHHhhCC-CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEhHHhhhccc
Confidence 4567888831 38999999999999999999999999999995 789999999999987654
No 214
>PRK14706 glycogen branching enzyme; Provisional
Probab=97.10 E-value=0.0014 Score=68.21 Aligned_cols=66 Identities=29% Similarity=0.500 Sum_probs=48.9
Q ss_pred EEEEEe-eCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEEe-CCceEEEEEEEcC---ee--ecCCCCCeee
Q 020637 22 PVRFIW-PNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRL-PPGHHQYKFYVDG---EW--RHDENQPHVS 90 (323)
Q Consensus 22 ~v~F~w-~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~g~~~~~~~L-ppG~y~YkFiVDG---~w--~~d~~~p~~~ 90 (323)
-++|+. .+.|++|.|+|+||+|... .+|.+.+ .|+|++.++- .+| ..|||.|+| .+ +.||....+.
T Consensus 39 Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~~--~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~~DPYa~~~~ 112 (639)
T PRK14706 39 GVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRLD--FGFWGAFVPGARPG-QRYKFRVTGAAGQTVDKMDPYGSFFE 112 (639)
T ss_pred cEEEEEECCCCCEEEEEEecCCcccccccccccC--CCEEEEEECCCCCC-CEEEEEEECCCCCEEeccCcceEEEe
Confidence 467765 5689999999999999864 6998865 6999999874 445 468888854 33 5677655443
No 215
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=97.09 E-value=0.00075 Score=67.10 Aligned_cols=58 Identities=17% Similarity=0.348 Sum_probs=51.5
Q ss_pred cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (323)
Q Consensus 155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~ 215 (323)
..+.++| ...++++.+++...++.+++.++++.++||+|+ .++++|++|.-|+++++.
T Consensus 196 ~~i~~im--~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~-~~~LiG~itiDDiidvi~ 253 (451)
T COG2239 196 ELLKDLM--EDDVVSVLADDDQEEVARLFEKYDLLAVPVVDE-DNRLIGIITIDDIIDVIE 253 (451)
T ss_pred hHHHHHh--cccceeecccCCHHHHHHHHHHhCCeecceECC-CCceeeeeeHHHHHHHHH
Confidence 3456778 355899999999999999999999999999995 789999999999998765
No 216
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=97.09 E-value=0.0023 Score=50.47 Aligned_cols=52 Identities=25% Similarity=0.455 Sum_probs=40.6
Q ss_pred EEEEeeC---CCceEEEEec---cCCCCCC--CCCCCCCCCCCeEEEEEEeCCc-eEEEEEEE
Q 020637 23 VRFIWPN---GGRRVSLSGS---FTRWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYV 76 (323)
Q Consensus 23 v~F~w~~---~~~~V~l~Gs---f~~W~~~--~~m~~~~~~~g~~~~~~~LppG-~y~YkFiV 76 (323)
++|+.++ .|+.++|+|+ .-+|++. .+|+..+ ...|++++.||++ .++|||++
T Consensus 2 v~F~i~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~--~~~W~~~v~lp~~~~veYKY~i 62 (100)
T cd05817 2 VTFKIHYPTQFGEAVYISGNCNQLGNWNPSKAKRMQWNE--GDLWTVDVGIPESVYIEYKYFV 62 (100)
T ss_pred EEEEEEEEcCCCCEEEEEeCcHHHCCCCccccCcccCCC--CCCEEEEEEECCCCcEEEEEEE
Confidence 4555542 4799999999 5589864 5887654 5689999999987 59999998
No 217
>PRK14705 glycogen branching enzyme; Provisional
Probab=97.01 E-value=0.0012 Score=72.78 Aligned_cols=63 Identities=24% Similarity=0.497 Sum_probs=47.5
Q ss_pred EEEEEe-eCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEE-eCCceEEEEEEEc---Cee--ecCCCC
Q 020637 22 PVRFIW-PNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD---GEW--RHDENQ 86 (323)
Q Consensus 22 ~v~F~w-~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~g~~~~~~~-LppG~y~YkFiVD---G~w--~~d~~~ 86 (323)
-++|+. .+.|++|.|+|+||+|... .+|.+.. ..|+|++.++ +.+|. .|||.|+ |.| +.||..
T Consensus 639 Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~~-~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~k~DPyA 709 (1224)
T PRK14705 639 GVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSLG-SSGVWELFIPGVVAGA-CYKFEILTKAGQWVEKADPLA 709 (1224)
T ss_pred eEEEEEECCCCCEEEEEEEecCCCCCcccceECC-CCCEEEEEECCCCCCC-EEEEEEEcCCCcEEecCCccc
Confidence 567765 6789999999999999874 5888743 3799999986 78885 6888884 544 455554
No 218
>PRK05402 glycogen branching enzyme; Provisional
Probab=97.00 E-value=0.0019 Score=68.35 Aligned_cols=66 Identities=27% Similarity=0.431 Sum_probs=48.1
Q ss_pred eEEEEEee-CCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEE-eCCc-eEEEEEEEc-Cee--ecCCCCC
Q 020637 21 VPVRFIWP-NGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPG-HHQYKFYVD-GEW--RHDENQP 87 (323)
Q Consensus 21 ~~v~F~w~-~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~g~~~~~~~-LppG-~y~YkFiVD-G~w--~~d~~~p 87 (323)
..++|+.- +.|++|.|+|+||+|... .+|++.. ..|.|.+.++ +++| .|.|++..+ |.| ..||..-
T Consensus 131 ~gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~~-~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPYa~ 203 (726)
T PRK05402 131 SGVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLRG-ESGVWELFIPGLGEGELYKFEILTADGELLLKADPYAF 203 (726)
T ss_pred CcEEEEEECCCCCEEEEEEEcCCCCCccccceEcC-CCCEEEEEeCCCCCCCEEEEEEeCCCCcEeecCCCceE
Confidence 35788875 579999999999999864 6898862 3799999986 6666 577777664 444 4455443
No 219
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=96.98 E-value=0.0033 Score=49.53 Aligned_cols=52 Identities=19% Similarity=0.386 Sum_probs=41.7
Q ss_pred EEEEeeC----CCceEEEEecc---CCCCCC--CCCCCCCCCCCeEEEEEEeCCc--eEEEEEEE
Q 020637 23 VRFIWPN----GGRRVSLSGSF---TRWSEP--MPMSPSEGCPAVFQIICRLPPG--HHQYKFYV 76 (323)
Q Consensus 23 v~F~w~~----~~~~V~l~Gsf---~~W~~~--~~m~~~~~~~g~~~~~~~LppG--~y~YkFiV 76 (323)
|+|+... .+++|+|+|+- .+|++. .+|+... ...|++.+.+|++ .++|||++
T Consensus 2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~--~~~W~~~v~~p~~~~~ieYKyvi 64 (99)
T cd05816 2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDVG--FPIWEADIDISKDSFPFEYKYII 64 (99)
T ss_pred EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCCC--CCcEEEEEEeCCCCccEEEEEEE
Confidence 6777753 47899999985 489864 5888754 5789999999986 59999998
No 220
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=96.96 E-value=0.0057 Score=48.27 Aligned_cols=57 Identities=23% Similarity=0.285 Sum_probs=42.3
Q ss_pred eeEEEEEee-C---CCceEEEEeccC---CCCCCC--CCC-C-CCCCCCeEEEEEEeCCc-eEEEEEEE
Q 020637 20 LVPVRFIWP-N---GGRRVSLSGSFT---RWSEPM--PMS-P-SEGCPAVFQIICRLPPG-HHQYKFYV 76 (323)
Q Consensus 20 ~~~v~F~w~-~---~~~~V~l~Gsf~---~W~~~~--~m~-~-~~~~~g~~~~~~~LppG-~y~YkFiV 76 (323)
.++|+|..+ . .|++|+|+|+-. +|++.. .|. . .......|++++.||.| .++|||++
T Consensus 2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~~~~~~~~W~~~~~lp~~~~~eyK~~~ 70 (101)
T cd05807 2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQVVYQYPNWYYDVSVPAGTTIEFKFIK 70 (101)
T ss_pred cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccccCCCcCCcEEEEEEcCCCCcEEEEEEE
Confidence 478999985 2 479999999865 898642 222 1 11235689999999998 59999998
No 221
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.93 E-value=0.0044 Score=48.00 Aligned_cols=53 Identities=26% Similarity=0.459 Sum_probs=41.3
Q ss_pred EEEEeeC---CCceEEEEeccC---CCCCC--CCCCCCCCCCCeEEEEEEeCC--c-eEEEEEEE
Q 020637 23 VRFIWPN---GGRRVSLSGSFT---RWSEP--MPMSPSEGCPAVFQIICRLPP--G-HHQYKFYV 76 (323)
Q Consensus 23 v~F~w~~---~~~~V~l~Gsf~---~W~~~--~~m~~~~~~~g~~~~~~~Lpp--G-~y~YkFiV 76 (323)
|+|+..+ .|+.++|+|+.. +|++. .+|+..+ ..+.|++.+.+|+ + .++|||++
T Consensus 2 v~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~-~~~~W~~~v~~~~~~~~~~~yKy~~ 65 (96)
T cd05467 2 VRFQVRCTTQFGQSVYVVGSHPELGNWDPAKALRLNTSN-SYPLWTGEIPLPAPEGQVIEYKYVI 65 (96)
T ss_pred EEEEEEEECCCCCEEEEEeCcHHhCCcChhcCccccCCC-CCCcEEEEEEecCCCCCeEEEEEEE
Confidence 4566653 589999999976 89853 5887653 2578999999999 7 69999998
No 222
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=96.82 E-value=0.0094 Score=46.84 Aligned_cols=54 Identities=22% Similarity=0.408 Sum_probs=42.1
Q ss_pred eEEEEEee-C---CCceEEEEeccC---CCCCC--CCCCCCCCCCCeEEEEEEeCCc-eEEEEEEE
Q 020637 21 VPVRFIWP-N---GGRRVSLSGSFT---RWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYV 76 (323)
Q Consensus 21 ~~v~F~w~-~---~~~~V~l~Gsf~---~W~~~--~~m~~~~~~~g~~~~~~~LppG-~y~YkFiV 76 (323)
|+|+|... . .++.++|+|+-. +|++. .+|... ....|++.+.||.| ..+|||++
T Consensus 1 v~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~--~~~~W~~~v~lp~~~~veyKyv~ 64 (97)
T cd05810 1 VSVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPT--AYPTWSGSISLPASTNVEWKCLK 64 (97)
T ss_pred CeEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCC--CCCeEEEEEEcCCCCeEEEEEEE
Confidence 56788843 2 478999999876 89864 567654 25789999999998 59999987
No 223
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=96.76 E-value=0.0035 Score=64.10 Aligned_cols=72 Identities=19% Similarity=0.233 Sum_probs=53.1
Q ss_pred EEEE-eeCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEE-eCCceEEEEEEEcC-eeecCCCCCeeeCCCCccceE
Q 020637 23 VRFI-WPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDG-EWRHDENQPHVSGNYGVVNCV 99 (323)
Q Consensus 23 v~F~-w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~g~~~~~~~-LppG~y~YkFiVDG-~w~~d~~~p~~~d~~G~~nnv 99 (323)
|+|+ |.+.|++|.|.+. + ...+|++.+ +|+|+++++ +.+| +.|+|.||| ..+.||........ .+-.++
T Consensus 1 v~FrlwAP~A~~V~L~l~---~-~~~~m~k~~--~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~~~~-~~~~S~ 72 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLN---G-ALHAMQRLG--DGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQPDG-VHGPSQ 72 (542)
T ss_pred CEEEEECCCCCEEEEEeC---C-CEEeCeECC--CCEEEEEECCCCCC-CEEEEEEeeeEEecCccccccccC-CCCCeE
Confidence 4675 5678999999973 3 247999875 799999997 7778 789999999 67899988765432 122355
Q ss_pred EEe
Q 020637 100 YIA 102 (323)
Q Consensus 100 l~v 102 (323)
+..
T Consensus 73 V~d 75 (542)
T TIGR02402 73 VVD 75 (542)
T ss_pred Eec
Confidence 544
No 224
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.62 E-value=0.0082 Score=45.74 Aligned_cols=62 Identities=21% Similarity=0.279 Sum_probs=45.1
Q ss_pred EEEEe-eCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEEeCCceEEEEEEEc-CeeecCCCCCeee
Q 020637 23 VRFIW-PNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVD-GEWRHDENQPHVS 90 (323)
Q Consensus 23 v~F~w-~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~g~~~~~~~LppG~y~YkFiVD-G~w~~d~~~p~~~ 90 (323)
++|+. .+.|++|.|.... |. ..+|.+.+ +|.|++++..-+|. .|+|.|+ |..+.||......
T Consensus 10 ~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~~--~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~~~ 73 (85)
T cd02853 10 TRFRLWAPDAKRVTLRLDD--GE-EIPMQRDG--DGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRFQP 73 (85)
T ss_pred EEEEEeCCCCCEEEEEecC--CC-cccCccCC--CcEEEEEeCCCCCC-eEEEEECCCcCCCCCccccCC
Confidence 66775 6689999999643 53 47898765 79999998733665 4777776 4678888877543
No 225
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=96.44 E-value=0.0062 Score=59.20 Aligned_cols=57 Identities=18% Similarity=0.407 Sum_probs=49.9
Q ss_pred cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (323)
Q Consensus 155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~ 215 (323)
.++.+.| ...+.++.+++++.+|+.+|.+++.. +||+|+ +|+++|+||..+++..|.
T Consensus 302 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~~g~i~~~~~~~~~~ 358 (363)
T TIGR01186 302 QGLQDVL--IDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDE-DQRLVGIVTRGSLVDALY 358 (363)
T ss_pred Cchhhhh--ccCCceECCCCcHHHHHHHHHhCCCC-EEEECC-CCcEEEEEEHHHHHHHHH
Confidence 3577777 45678899999999999999999999 999995 799999999999987765
No 226
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.28 E-value=0.0078 Score=63.67 Aligned_cols=62 Identities=11% Similarity=0.023 Sum_probs=44.8
Q ss_pred EEEEE-eeCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEEeCCceEEEEEEE--cCe--eecCCCC
Q 020637 22 PVRFI-WPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYV--DGE--WRHDENQ 86 (323)
Q Consensus 22 ~v~F~-w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~g~~~~~~~LppG~y~YkFiV--DG~--w~~d~~~ 86 (323)
-++|+ |.+.|++|.|+|+||+ ....+|++.+ ..|.|++.+++..|.. |||.| ||. .+.||..
T Consensus 29 g~~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~~-~~G~w~~~ip~~~g~~-YKy~i~~~g~~~~k~DPya 95 (726)
T PRK05402 29 GLVVRALLPGAEEVWVILPGGG-RKLAELERLH-PRGLFAGVLPRKGPFD-YRLRVTWGGGEQLIDDPYR 95 (726)
T ss_pred cEEEEEECCCCeEEEEEeecCC-CccccceEcC-CCceEEEEecCCCCCC-eEEEEEeCCceeEeccccc
Confidence 45565 5789999999999997 3346999754 3799999999666742 55555 785 4566653
No 227
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=95.96 E-value=0.014 Score=60.66 Aligned_cols=67 Identities=22% Similarity=0.441 Sum_probs=48.9
Q ss_pred EEEEEe-eCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEE-eCCceEEEEEEEc---Ce--eecCCCCCeee
Q 020637 22 PVRFIW-PNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD---GE--WRHDENQPHVS 90 (323)
Q Consensus 22 ~v~F~w-~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~g~~~~~~~-LppG~y~YkFiVD---G~--w~~d~~~p~~~ 90 (323)
.++|+. .+.|++|.|.|+||+|... .+|.+.. ..|+|++.++ +.+|. .|+|.|+ |. ++.||......
T Consensus 29 g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~~-~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~DPYA~~~~ 103 (613)
T TIGR01515 29 GTRFCVWAPNAREVRVAGDFNYWDGREHPMRRRN-DNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKADPYAFYAE 103 (613)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCCceecceEec-CCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeCCCCEeeec
Confidence 567765 6789999999999999764 5888753 2699999987 45565 5888884 54 46787665433
No 228
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=95.96 E-value=0.02 Score=45.08 Aligned_cols=54 Identities=30% Similarity=0.610 Sum_probs=40.1
Q ss_pred EEEEeeC---CCceEEEEeccC---CCCCC--CCCCCCC-CCCCeEEEEEEeCCc-eEEEEEEE
Q 020637 23 VRFIWPN---GGRRVSLSGSFT---RWSEP--MPMSPSE-GCPAVFQIICRLPPG-HHQYKFYV 76 (323)
Q Consensus 23 v~F~w~~---~~~~V~l~Gsf~---~W~~~--~~m~~~~-~~~g~~~~~~~LppG-~y~YkFiV 76 (323)
++|...+ -|++++|+|+-. +|++. .+|.... .....|++++.+|++ .++|||+|
T Consensus 2 l~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~~~~veYky~v 65 (101)
T cd05815 2 LSFKLPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPPGFSSEYNYYV 65 (101)
T ss_pred EEEEEEEEccCCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCCCCcEEEEEEE
Confidence 5677654 489999999864 79764 5785421 123489999999987 49999999
No 229
>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase. The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.
Probab=95.54 E-value=0.12 Score=42.42 Aligned_cols=81 Identities=22% Similarity=0.359 Sum_probs=53.8
Q ss_pred eEEEEEee----CCCceEEEEeccCCCCC-----CCCCCCCCCCCCeEEEEEEeCCc-eEEEEEEEcCe-----------
Q 020637 21 VPVRFIWP----NGGRRVSLSGSFTRWSE-----PMPMSPSEGCPAVFQIICRLPPG-HHQYKFYVDGE----------- 79 (323)
Q Consensus 21 ~~v~F~w~----~~~~~V~l~Gsf~~W~~-----~~~m~~~~~~~g~~~~~~~LppG-~y~YkFiVDG~----------- 79 (323)
+.|||-|+ .....+.|.|+.|+... ...|++.++ ..+|..++.||.. +-.|+|+.+-.
T Consensus 2 ~~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl~g-TDVW~~t~~lp~d~rgSY~~~p~~~~~~~~~r~~~r 80 (122)
T PF11806_consen 2 CLVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRLPG-TDVWYWTYRLPADWRGSYSFIPDVPDARGAQREWWR 80 (122)
T ss_dssp -EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE-TT-SSEEEEEEEEETT-EEEEEEEEES-T-HHHHHHHHH
T ss_pred cEEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeCCC-CceEEEEEEECcccEEEEEEEecCcccchhHHHHHH
Confidence 57999999 34577999999998853 247887764 6899999999998 68899996433
Q ss_pred -----eecCCCCCeee-CC---CCccceEEEe
Q 020637 80 -----WRHDENQPHVS-GN---YGVVNCVYIA 102 (323)
Q Consensus 80 -----w~~d~~~p~~~-d~---~G~~nnvl~v 102 (323)
-..||-||... .. .|..-++++.
T Consensus 81 ~~l~~~~~DPlNp~~~~~~~~~~g~~~S~l~L 112 (122)
T PF11806_consen 81 AILAQAQADPLNPRPWPNGAQDRGNAASVLEL 112 (122)
T ss_dssp HHGGG-B--TTSSSEEE-TT---SSEEEEEE-
T ss_pred HHHhccCCCCCCCCCCCCCccccccccCceeC
Confidence 36789888654 33 4888999998
No 230
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=95.53 E-value=0.031 Score=55.04 Aligned_cols=58 Identities=17% Similarity=0.232 Sum_probs=48.9
Q ss_pred ccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhh
Q 020637 156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL 217 (323)
Q Consensus 156 ~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~ 217 (323)
.+.+.+ ...+.++..+++|.+|+..|.+.... +||+|+ +|+++|+||..++++.|...
T Consensus 338 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 338 GLDAAL--IDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDE-DQQYVGIISKGMLLRALDRE 395 (400)
T ss_pred chhhhh--ccCCceeCCCCCHHHHHHHHHhCCCc-EEEECC-CCcEEEEEEHHHHHHHHHhc
Confidence 466666 35678999999999999999998766 999995 79999999999998877643
No 231
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=95.51 E-value=0.028 Score=55.04 Aligned_cols=47 Identities=11% Similarity=0.188 Sum_probs=39.8
Q ss_pred CCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 258 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 258 ~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
...+.++.++++|.+++..+.+.. +-+||+|+ | +++|+|+..+|+++
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~----~---~~~g~~~~~~~~~~ 378 (382)
T TIGR03415 332 EAAPTVINPDTLMRDVLAARHRTG-GAILLVEN----G---RIVGVIGDDNIYHA 378 (382)
T ss_pred cccCcccCCCCcHHHHHHHHhcCC-CCeEEeeC----C---eEEEEEeHHHHHHH
Confidence 344678999999999999988866 55999973 5 89999999999876
No 232
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=95.26 E-value=0.049 Score=41.90 Aligned_cols=61 Identities=23% Similarity=0.480 Sum_probs=37.4
Q ss_pred EEEEEeeC------CCceEEEEeccCCCCCC--CCCCCCC--CCCCeEEEEEEeCCceEEEEEEE-cC--eeec
Q 020637 22 PVRFIWPN------GGRRVSLSGSFTRWSEP--MPMSPSE--GCPAVFQIICRLPPGHHQYKFYV-DG--EWRH 82 (323)
Q Consensus 22 ~v~F~w~~------~~~~V~l~Gsf~~W~~~--~~m~~~~--~~~g~~~~~~~LppG~y~YkFiV-DG--~w~~ 82 (323)
+|++.|.. ++.+|++.+.|++|... .+|.+.. ...+.|++++.+|..-|+..|+. || .|-.
T Consensus 3 ~vtVyYn~~~~~l~g~~~v~~~~G~n~W~~~~~~~m~~~~~~~~~~~~~~tv~vP~~a~~~dfvF~dg~~~wDN 76 (87)
T PF03423_consen 3 TVTVYYNPSLTALSGAPNVHLHGGFNRWTHVPGFGMTKMCVPDEGGWWKATVDVPEDAYVMDFVFNDGAGNWDN 76 (87)
T ss_dssp EEEEEE---E-SSS-S-EEEEEETTS-B-SSS-EE-EEESS---TTEEEEEEE--TTTSEEEEEEE-SSS-EES
T ss_pred EEEEEEEeCCCCCCCCCcEEEEecCCCCCcCCCCCcceeeeeecCCEEEEEEEEcCCceEEEEEEcCCCCcEeC
Confidence 46666632 36899999999999865 3566542 12689999999999988999987 65 4533
No 233
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=95.10 E-value=0.35 Score=39.08 Aligned_cols=55 Identities=24% Similarity=0.361 Sum_probs=39.9
Q ss_pred EEEEEee----CCCceEEEEecc---CCCCCC--CCCCCCC-----CCCCeEEEEEEeCCc----eEEEEEEE
Q 020637 22 PVRFIWP----NGGRRVSLSGSF---TRWSEP--MPMSPSE-----GCPAVFQIICRLPPG----HHQYKFYV 76 (323)
Q Consensus 22 ~v~F~w~----~~~~~V~l~Gsf---~~W~~~--~~m~~~~-----~~~g~~~~~~~LppG----~y~YkFiV 76 (323)
.|+|... ..+++++|+|+- -+|+.. .+|.... .....|.+.+.||++ .++|||+.
T Consensus 2 ~~~f~~~~~~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~ 74 (112)
T cd05806 2 LFRFGVVLTFADRDTELLVLGSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVELSEPGSEDTFWYKFLK 74 (112)
T ss_pred EEEEEEEEeecCCCCEEEEEECchhcCCCCcccccccccccccccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence 4556553 468899999984 489864 4676541 124479999999996 69999997
No 234
>PLN02316 synthase/transferase
Probab=94.64 E-value=0.11 Score=56.73 Aligned_cols=49 Identities=16% Similarity=0.285 Sum_probs=41.5
Q ss_pred CceEEEEeccCCCCCC---CCCCCCCCCCCeEEEEEEeCCceEEEEEEE-cCe
Q 020637 31 GRRVSLSGSFTRWSEP---MPMSPSEGCPAVFQIICRLPPGHHQYKFYV-DGE 79 (323)
Q Consensus 31 ~~~V~l~Gsf~~W~~~---~~m~~~~~~~g~~~~~~~LppG~y~YkFiV-DG~ 79 (323)
..+|.|.|-||+|.-. .+|.|.+..++.|++++.+|++-|..-|+. ||.
T Consensus 170 ~~~v~i~~gfN~W~~~~f~~~~~k~~~~g~ww~~~v~Vp~~A~~ldfVf~~g~ 222 (1036)
T PLN02316 170 EPDVLIMGAFNGWRWKSFTERLEKTELGGDWWSCKLHIPKEAYKMDFVFFNGQ 222 (1036)
T ss_pred CCceEEEeccccccccccceeccccccCCCeEEEEEecCccceEEEEEEeCCc
Confidence 5789999999999864 377777644778999999999999999998 773
No 235
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.52 E-value=0.71 Score=42.87 Aligned_cols=132 Identities=11% Similarity=0.106 Sum_probs=80.1
Q ss_pred CCHHHHHHHHHhhhhhccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH---
Q 020637 136 YSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL--- 212 (323)
Q Consensus 136 ~s~~~l~~~~~~~~~~l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~--- 212 (323)
+++..++++...+.+-++ ..+|.|..| +.||+++-- .+.|++ .|+++=.=|...++.
T Consensus 169 I~R~~lQ~e~~~lq~~l~-----------kTivfVTHD--idEA~kLad-----ri~vm~--~G~i~Q~~~P~~il~~Pa 228 (309)
T COG1125 169 ITRKQLQEEIKELQKELG-----------KTIVFVTHD--IDEALKLAD-----RIAVMD--AGEIVQYDTPDEILANPA 228 (309)
T ss_pred hhHHHHHHHHHHHHHHhC-----------CEEEEEecC--HHHHHhhhc-----eEEEec--CCeEEEeCCHHHHHhCcc
Confidence 779999998888888876 456666666 889998753 467887 589988888555432
Q ss_pred --HHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhhcccccCCCCCCCCCC---cEEeCCCCCHHHHHHHHHHcCCCEEeE
Q 020637 213 --ILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRP---LVQAGPYDSLKEVALKILQNKVATVPI 287 (323)
Q Consensus 213 --~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~im~~~---~vtv~pd~~L~eaa~~m~~~~i~rlPV 287 (323)
++..+.... +..+....+..+.+.. +... --.+.......+++..+...+...+||
T Consensus 229 n~FV~~f~g~~----~~~~~~l~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~V 289 (309)
T COG1125 229 NDFVEDFFGES----ERGLRLLSLVSVADAV---------------RRGEPADGEPLLEGFVDRDALSDFLARGRSVLPV 289 (309)
T ss_pred HHHHHHHhccc----cccccccchhhHHHhh---------------cccccccCCccccchhhHHHHHHHHhcCCceeEE
Confidence 111111100 0000000111111110 1110 011223344556888899999999999
Q ss_pred EecCCCCCCcccEEEEeeccccccc
Q 020637 288 IHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 288 vD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
+|+ +| +++|.||+.+|+..
T Consensus 290 vd~---~g---~~~G~vt~~~l~~~ 308 (309)
T COG1125 290 VDE---DG---RPLGTVTRADLLDE 308 (309)
T ss_pred ECC---CC---cEeeEEEHHHHhhh
Confidence 995 46 89999999999853
No 236
>PRK11573 hypothetical protein; Provisional
Probab=94.21 E-value=0.099 Score=51.73 Aligned_cols=50 Identities=8% Similarity=0.106 Sum_probs=45.6
Q ss_pred CCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (323)
Q Consensus 165 ~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~ 215 (323)
+++..+..+.++.++++.|++++.+-+.|+|+ -|..+|+||..|++..+.
T Consensus 262 r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE-yG~~~GiVTleDilEeiv 311 (413)
T PRK11573 262 DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE-YGDIQGLVTVEDILEEIV 311 (413)
T ss_pred cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEec-CCCeEEEeeHHHHHHHHh
Confidence 67888999999999999999999999999995 789999999999987553
No 237
>PLN02950 4-alpha-glucanotransferase
Probab=94.20 E-value=0.42 Score=51.88 Aligned_cols=70 Identities=20% Similarity=0.414 Sum_probs=52.3
Q ss_pred cCCeeeEEEEEeeC----CCceEEEEeccC---CCCCC--CCCCCCCCCCCeEEEEEEeCCc--eEEEEEEE---cC--e
Q 020637 16 VGSILVPVRFIWPN----GGRRVSLSGSFT---RWSEP--MPMSPSEGCPAVFQIICRLPPG--HHQYKFYV---DG--E 79 (323)
Q Consensus 16 ~~~~~~~v~F~w~~----~~~~V~l~Gsf~---~W~~~--~~m~~~~~~~g~~~~~~~LppG--~y~YkFiV---DG--~ 79 (323)
.+...++|+|.... .|++|+|+|+-. +|++. .+|.... ...|++++.+|++ ..+|||++ +| .
T Consensus 148 ~~~~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~~--~p~W~~~v~lp~~~~~~EYKyv~~~~~g~v~ 225 (909)
T PLN02950 148 PAPDEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNYTG--DSIWEADCLVPKSDFPIKYKYALQTAEGLVS 225 (909)
T ss_pred CCCCceeEEEEEecCccCCCCeEEEEechhhcCCCCcccccccccCC--CCcEEEEEEecCCCceEEEEEEEEcCCCceE
Confidence 35667889999853 489999999865 89865 4676533 6789999999988 49999998 44 4
Q ss_pred eecCCCCC
Q 020637 80 WRHDENQP 87 (323)
Q Consensus 80 w~~d~~~p 87 (323)
|-..++.-
T Consensus 226 WE~g~NR~ 233 (909)
T PLN02950 226 LELGVNRE 233 (909)
T ss_pred EeeCCCce
Confidence 76555543
No 238
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=94.12 E-value=0.13 Score=53.37 Aligned_cols=65 Identities=17% Similarity=0.182 Sum_probs=45.8
Q ss_pred EEEEe-eCCCceEEEEeccCCCCC-----CCCCCCCCCCCCeEEEEEE-eCCce-EEEEEEEcCe--eecCCCCCeee
Q 020637 23 VRFIW-PNGGRRVSLSGSFTRWSE-----PMPMSPSEGCPAVFQIICR-LPPGH-HQYKFYVDGE--WRHDENQPHVS 90 (323)
Q Consensus 23 v~F~w-~~~~~~V~l~Gsf~~W~~-----~~~m~~~~~~~g~~~~~~~-LppG~-y~YkFiVDG~--w~~d~~~p~~~ 90 (323)
++|+. .+.|++|.|++ |++|.. .++|.+.. .|+|++.++ +.+|. |.|++..+|. ++.||......
T Consensus 21 ~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~~--~gvw~~~i~~~~~g~~Y~y~v~~~~~~~~~~DPya~~~~ 95 (605)
T TIGR02104 21 TVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRGE--NGVWSAVLEGDLHGYFYTYQVCINGKWRETVDPYAKAVT 95 (605)
T ss_pred eEEEEECCCCCEEEEEE-EcCCCCCccceEEecccCC--CCEEEEEECCCCCCCEEEEEEEcCCCeEEEcCCCcceec
Confidence 67865 56899999998 888853 35888754 799999987 45553 4444444564 48888876543
No 239
>PLN02960 alpha-amylase
Probab=93.99 E-value=0.047 Score=58.22 Aligned_cols=52 Identities=29% Similarity=0.540 Sum_probs=39.8
Q ss_pred EEEeeCCCceEEEEeccCCCCCCC-CCC-----CCCCCCCeEEEEEE--eCCc----e---EEEEEEEc
Q 020637 24 RFIWPNGGRRVSLSGSFTRWSEPM-PMS-----PSEGCPAVFQIICR--LPPG----H---HQYKFYVD 77 (323)
Q Consensus 24 ~F~w~~~~~~V~l~Gsf~~W~~~~-~m~-----~~~~~~g~~~~~~~--LppG----~---y~YkFiVD 77 (323)
-..|.++|+.+.|+|+||+|+++. +|. +++ =|+|.++++ |..| . -||.|..|
T Consensus 132 ~~~wap~a~~~~~~gdfn~w~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (897)
T PLN02960 132 FMEWAPGARYCSLVGDFNNWSPTENRAREGYFGHDD--FGYWFIILEDKLREGEEPDELYFQEYNYVDD 198 (897)
T ss_pred EEEEcCCceeEEEeecccCCCcccchhhcccccccc--cceEEEEechhhhcCCCcchhhhhhhccccc
Confidence 446899999999999999999863 554 544 689999986 6666 2 36777764
No 240
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=93.61 E-value=0.15 Score=50.71 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=45.5
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~ 215 (323)
+++.+...+++.++++.|++++.+-+.|+|+ -|.+.|+||..|++..+.
T Consensus 280 ~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE-yG~~~GlVTleDIiEeIv 328 (429)
T COG1253 280 PPLFVPETLSLSDLLEEFREERTHMAIVVDE-YGGVEGLVTLEDIIEEIV 328 (429)
T ss_pred CCeEecCCCcHHHHHHHHHHhCCeEEEEEEc-CCCeEEEeEHHHHHHHHh
Confidence 8899999999999999999999999999995 699999999999998654
No 241
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=93.45 E-value=0.47 Score=46.93 Aligned_cols=86 Identities=24% Similarity=0.328 Sum_probs=59.8
Q ss_pred CCeeeEEEEEeeC-CC-------ceEEEE--eccC--CCCCCCCCCCCCCCCCeEEEEEEeCCc-eEEEEEEEc---C--
Q 020637 17 GSILVPVRFIWPN-GG-------RRVSLS--GSFT--RWSEPMPMSPSEGCPAVFQIICRLPPG-HHQYKFYVD---G-- 78 (323)
Q Consensus 17 ~~~~~~v~F~w~~-~~-------~~V~l~--Gsf~--~W~~~~~m~~~~~~~g~~~~~~~LppG-~y~YkFiVD---G-- 78 (323)
....+.|||-|++ .+ +.|+|- |..+ .+....+|++-.+ ..+|..++.||.. +-.|+|+++ +
T Consensus 35 ~~~~~~vTFlwr~~~~~~~~~~~~~v~~~~n~~tdh~~~~~~~~l~rl~~-tDvW~~~~~~p~~~r~sY~~~~~~~~~~~ 113 (411)
T PRK10439 35 DDGMVRVTFWWRDPQGDEEHSTIRRVWIYINGVTDHHQNSQPQSLQRIAG-TDVWQWSTELSANWRGSYCFIPTERDDIF 113 (411)
T ss_pred CCCcEEEEEEeeCCCCCcccccceeEEEeCCCCCCcCccCCcchhhccCC-CceEEEEEEECcccEEEEEEEeccccccc
Confidence 4556899999986 23 358873 2222 2434457988864 7899999999998 689999982 1
Q ss_pred -----------------------eeecCCCCCeee-CCCCccceEEEec
Q 020637 79 -----------------------EWRHDENQPHVS-GNYGVVNCVYIAV 103 (323)
Q Consensus 79 -----------------------~w~~d~~~p~~~-d~~G~~nnvl~v~ 103 (323)
.-+.||.||... +..|+..|+++++
T Consensus 114 ~~~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~lp 162 (411)
T PRK10439 114 SAFAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEMP 162 (411)
T ss_pred cccccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccCC
Confidence 114788888654 4456556889883
No 242
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=93.30 E-value=0.11 Score=53.20 Aligned_cols=51 Identities=18% Similarity=0.280 Sum_probs=44.6
Q ss_pred cccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637 159 ELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (323)
Q Consensus 159 dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~ 212 (323)
-+|+ ...+++..++++.+|+.++++-|++++.|++ +.++.+|++|..|++.
T Consensus 694 p~~n--~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~-~~~~~~gilTR~D~~~ 744 (762)
T KOG0474|consen 694 PFMN--PSPYTVPETMSLAKAFILFRQLGLRHLLVVP-KTNRVVGILTRKDLAR 744 (762)
T ss_pred cccC--CCCcccCcccchHHHHHHHHHhcceeEEEec-CCCceeEEEehhhhhh
Confidence 3464 4568899999999999999999999999998 5788899999999964
No 243
>PLN02950 4-alpha-glucanotransferase
Probab=93.27 E-value=0.67 Score=50.35 Aligned_cols=60 Identities=27% Similarity=0.486 Sum_probs=45.3
Q ss_pred CCeeeEEEEEeeC---CCceEEEEeccC---CCCCC--CCCCCCC-CCCCeEEEEEEeCCc-eEEEEEEE
Q 020637 17 GSILVPVRFIWPN---GGRRVSLSGSFT---RWSEP--MPMSPSE-GCPAVFQIICRLPPG-HHQYKFYV 76 (323)
Q Consensus 17 ~~~~~~v~F~w~~---~~~~V~l~Gsf~---~W~~~--~~m~~~~-~~~g~~~~~~~LppG-~y~YkFiV 76 (323)
....+.++|..++ -|++|+|+|+-. +|+.. .+|.... .....|++++.||+| ..+|||++
T Consensus 5 ~~~~V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~~~d~~~W~~~v~lp~~~~ieYKYv~ 74 (909)
T PLN02950 5 SLKSVTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPVHQGDELVWEGSVSVPEGFSCEYSYYV 74 (909)
T ss_pred CCCcEEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccccCCCCCeEEEEEEecCCCeEEEEEEE
Confidence 4556788888874 389999999875 78864 5786432 113489999999997 59999995
No 244
>PLN02316 synthase/transferase
Probab=92.40 E-value=0.63 Score=51.04 Aligned_cols=59 Identities=14% Similarity=0.287 Sum_probs=43.9
Q ss_pred eEEEEEeeC------CCceEEEEeccCCCCCCC----CCCCCC-CCCCeEEEEEEeCCceEEEEEEE-cCe
Q 020637 21 VPVRFIWPN------GGRRVSLSGSFTRWSEPM----PMSPSE-GCPAVFQIICRLPPGHHQYKFYV-DGE 79 (323)
Q Consensus 21 ~~v~F~w~~------~~~~V~l~Gsf~~W~~~~----~m~~~~-~~~g~~~~~~~LppG~y~YkFiV-DG~ 79 (323)
-++++.|+. ++.+|++.|.||+|.... .|.+.+ +.++.|.+++.+|+.-|-.-|+. ||.
T Consensus 329 ~~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~~~~~~~~~g~ww~a~v~vP~~A~~mDfVFsdg~ 399 (1036)
T PLN02316 329 DTVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEKLVKSEEKDGDWWYAEVVVPERALVLDWVFADGP 399 (1036)
T ss_pred CEEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCcccceeecccCCCCCEEEEEEecCCCceEEEEEEecCC
Confidence 356777762 358999999999998632 233332 23568999999999999999997 773
No 245
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.33 E-value=0.14 Score=48.65 Aligned_cols=109 Identities=17% Similarity=0.213 Sum_probs=77.2
Q ss_pred cccccccccCCCCCeEEE-ecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhh
Q 020637 153 STHTVYELLPDSGKVTAL-DVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET 231 (323)
Q Consensus 153 ~~~~~~dvmp~s~~vv~v-d~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~ 231 (323)
+-.+..++|-. .+..+. .....-..|.+.+...+...+-+++ ..++++|+++..+.+..
T Consensus 272 ~VltA~~IM~~-~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~-~~~~~~g~v~~~~~~~~------------------ 331 (386)
T COG4175 272 RVLTAKDIMRR-PDLLIRKTPGDGPRVALKLLRDEGREYGYAVD-RGNKFVGVVSIDSLVKA------------------ 331 (386)
T ss_pred heeeHHHhhcc-cccccccccccccchhhhhhhhccchhhHHHh-ccCceeeEEeccchhcc------------------
Confidence 34567778853 222211 1222335688888888888888887 57789999987665310
Q ss_pred hhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637 232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (323)
Q Consensus 232 ~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~ 311 (323)
.+.+++.++.+++++.+.+..+.+.. .-+||+|+ .+ +++|+|+...++.
T Consensus 332 ------------------------~~~~~~~~v~~d~~~~~~~~~~~~~~-~p~aVvde---~~---r~vG~i~~~~vl~ 380 (386)
T COG4175 332 ------------------------ALIDDVLTVDADTPLSEILARIRQAP-CPVAVVDE---DG---RYVGIISRGELLE 380 (386)
T ss_pred ------------------------cccccccccCccchHHHHHHHHhcCC-CceeEEcC---CC---cEEEEecHHHHHH
Confidence 14566788999999999998877665 56899985 35 8999999999988
Q ss_pred c
Q 020637 312 C 312 (323)
Q Consensus 312 ~ 312 (323)
+
T Consensus 381 a 381 (386)
T COG4175 381 A 381 (386)
T ss_pred H
Confidence 7
No 246
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=91.55 E-value=0.47 Score=50.04 Aligned_cols=55 Identities=22% Similarity=0.441 Sum_probs=40.0
Q ss_pred EEEEEe-eCCCceEEEEeccCCCCC----CCCCCCCCCCCCeEEEEEE-eCCceEEEEEEEcCee
Q 020637 22 PVRFIW-PNGGRRVSLSGSFTRWSE----PMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEW 80 (323)
Q Consensus 22 ~v~F~w-~~~~~~V~l~Gsf~~W~~----~~~m~~~~~~~g~~~~~~~-LppG~y~YkFiVDG~w 80 (323)
.++|+. .+.|++|.|+ -|++|.. ..+|.+.. .|+|.+.++ +.+|. .|+|.|+|.|
T Consensus 15 g~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~~~--~gvW~~~v~~~~~g~-~Y~yrv~g~~ 75 (688)
T TIGR02100 15 GVNFALFSANAEKVELC-LFDAQGEKEEARLPLPERT--DDIWHGYLPGAQPGQ-LYGYRVHGPY 75 (688)
T ss_pred cEEEEEECCCCCEEEEE-EEcCCCCceeeEEecccCC--CCEEEEEECCCCCCC-EEEEEEeeee
Confidence 467866 5679999986 4555432 35787754 799999996 67776 4999999843
No 247
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=90.19 E-value=0.6 Score=51.64 Aligned_cols=65 Identities=11% Similarity=0.128 Sum_probs=47.1
Q ss_pred EEEEe-eCCCceEEEEe-ccCCCCC---CCCCCCCCCCCCeEEEEEE-eCCc-----eEEEEEEEcC----eeecCCCCC
Q 020637 23 VRFIW-PNGGRRVSLSG-SFTRWSE---PMPMSPSEGCPAVFQIICR-LPPG-----HHQYKFYVDG----EWRHDENQP 87 (323)
Q Consensus 23 v~F~w-~~~~~~V~l~G-sf~~W~~---~~~m~~~~~~~g~~~~~~~-LppG-----~y~YkFiVDG----~w~~d~~~p 87 (323)
++|+. .+.|++|.|++ ++++|.. .++|.+.. .|+|++.++ +.+| -+.|+|.|++ +.+.||...
T Consensus 329 v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~~--~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~~~~~~~DPYA~ 406 (1111)
T TIGR02102 329 VTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKGD--RGVWEVQLTKENTGIDSLTGYYYHYEITRGGDKVLALDPYAK 406 (1111)
T ss_pred EEEEEECCCCCEEEEEEEeCCCCCCceeeEecccCC--CCEEEEEECCcccCcccCCCceEEEEEECCCceEEEeChhhe
Confidence 66754 67899999997 4556653 46898754 799999987 4443 4788888876 457888765
Q ss_pred ee
Q 020637 88 HV 89 (323)
Q Consensus 88 ~~ 89 (323)
.+
T Consensus 407 al 408 (1111)
T TIGR02102 407 SL 408 (1111)
T ss_pred EE
Confidence 43
No 248
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=89.24 E-value=0.44 Score=46.57 Aligned_cols=55 Identities=24% Similarity=0.320 Sum_probs=47.2
Q ss_pred ccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHH
Q 020637 156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILI 213 (323)
Q Consensus 156 ~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~ 213 (323)
-+.|+|. .+.++...+.++++|=++|.++.-..+||+|+ .+.+|-||+.+|+.+.
T Consensus 172 ~~~~vmt--~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~-~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 172 LVSDVMT--KNPVTGAQGITLKEANEILKKIKKGKLPVVDD-KGELVAMLSRTDLMKN 226 (503)
T ss_pred hhhhhcc--cccccccccccHHHHHHHHHhhhcCCcceecc-CCceeeeeehhhhhhh
Confidence 3556773 44588888999999999999999999999995 8999999999999764
No 249
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=88.22 E-value=0.91 Score=44.49 Aligned_cols=47 Identities=19% Similarity=0.253 Sum_probs=40.1
Q ss_pred CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (323)
Q Consensus 166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~ 215 (323)
.+.++.+++++.+++..+.+.+. .+||+| + |+++|+|+..+++..|.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~-~-~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 334 APTVINPDTLMRDVLAARHRTGG-AILLVE-N-GRIVGVIGDDNIYHALL 380 (382)
T ss_pred cCcccCCCCcHHHHHHHHhcCCC-CeEEee-C-CeEEEEEeHHHHHHHHh
Confidence 56788999999999999998774 588888 3 89999999999987664
No 250
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=87.83 E-value=2 Score=33.96 Aligned_cols=58 Identities=17% Similarity=0.155 Sum_probs=37.9
Q ss_pred eeeEEEEEeeC-CCceEEEEeccCC--CC-CCCCCCCCCCCC--CeEEEEEEeCCceEEEEEEE
Q 020637 19 ILVPVRFIWPN-GGRRVSLSGSFTR--WS-EPMPMSPSEGCP--AVFQIICRLPPGHHQYKFYV 76 (323)
Q Consensus 19 ~~~~v~F~w~~-~~~~V~l~Gsf~~--W~-~~~~m~~~~~~~--g~~~~~~~LppG~y~YkFiV 76 (323)
..+.++++-.. ..++|.|.-.-+. |. ...+|.+....+ ..|++++.++.|.+.|.|.|
T Consensus 16 ~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~~~~~~~~~~~i~~~~~~~~Y~F~l 79 (116)
T cd02857 16 DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGSDELFDYWEATLPPPTGRLRYYFEL 79 (116)
T ss_pred CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeeeCCceeEEEEEEecCCcEEEEEEEE
Confidence 44555555443 4678888644332 22 246898765222 35999999888999999999
No 251
>PRK03705 glycogen debranching enzyme; Provisional
Probab=87.64 E-value=1 Score=47.34 Aligned_cols=54 Identities=20% Similarity=0.335 Sum_probs=39.8
Q ss_pred EEEEEe-eCCCceEEEEeccCCCC--CCCCCCCCCCCCCeEEEEEE-eCCceEEEEEEEcCe
Q 020637 22 PVRFIW-PNGGRRVSLSGSFTRWS--EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE 79 (323)
Q Consensus 22 ~v~F~w-~~~~~~V~l~Gsf~~W~--~~~~m~~~~~~~g~~~~~~~-LppG~y~YkFiVDG~ 79 (323)
-++|+. .+.|++|.|+. |+++. ...+|.+.. .|+|++.++ +.+|. .|+|.|+|.
T Consensus 20 g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~--~gvW~~~v~~~~~G~-~Y~yrv~g~ 77 (658)
T PRK03705 20 GVNFTLFSAHAERVELCV-FDENGQEQRYDLPARS--GDIWHGYLPGARPGL-RYGYRVHGP 77 (658)
T ss_pred CEEEEEECCCCCEEEEEE-EcCCCCeeeEeeeecc--CCEEEEEECCCCCCC-EEEEEEccc
Confidence 367865 56799999997 76653 235887654 789999987 55664 599999884
No 252
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=86.36 E-value=2.7 Score=45.62 Aligned_cols=67 Identities=21% Similarity=0.285 Sum_probs=45.4
Q ss_pred EEEEE-eeCCCceEEEEeccCCCC--CCCCCCCCCCCCCeEEEEEE-eCCceEEEEEEEc------Ce----eecCCCCC
Q 020637 22 PVRFI-WPNGGRRVSLSGSFTRWS--EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD------GE----WRHDENQP 87 (323)
Q Consensus 22 ~v~F~-w~~~~~~V~l~Gsf~~W~--~~~~m~~~~~~~g~~~~~~~-LppG~y~YkFiVD------G~----w~~d~~~p 87 (323)
.++|+ |.+.|++|.|++..++|. ...+|.+.+ ..|+|++.++ ...|. .|+|.|+ |. .+.||...
T Consensus 136 gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~~-~~GVWsv~v~g~~~G~-~Y~Y~V~v~~p~~G~v~~~~v~DPYA~ 213 (898)
T TIGR02103 136 GVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRDS-TSGVWSAEGGSSWKGA-YYRYEVTVYHPSTGKVETYLVTDPYSV 213 (898)
T ss_pred cEEEEEECCCCCEEEEEEEcCCCCccceEeCccCC-CCCEEEEEECcCCCCC-EeEEEEEEecCCCCeECCeEEeCcCcc
Confidence 46675 567899999997666653 236898763 2699999986 44554 3667665 53 36788765
Q ss_pred eee
Q 020637 88 HVS 90 (323)
Q Consensus 88 ~~~ 90 (323)
...
T Consensus 214 als 216 (898)
T TIGR02103 214 SLS 216 (898)
T ss_pred eEc
Confidence 543
No 253
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=85.05 E-value=1.4 Score=40.87 Aligned_cols=38 Identities=21% Similarity=0.469 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637 174 LAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (323)
Q Consensus 174 ~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~ 212 (323)
..-.+|+.-+...+...+||+|+ +|+++|.||..|+++
T Consensus 270 ~~~~~~ls~~~~~~~~~~~Vvd~-~g~~~G~vt~~~l~~ 307 (309)
T COG1125 270 FVDRDALSDFLARGRSVLPVVDE-DGRPLGTVTRADLLD 307 (309)
T ss_pred hhhHHHHHHHHhcCCceeEEECC-CCcEeeEEEHHHHhh
Confidence 34566888999999999999995 899999999999865
No 254
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=84.91 E-value=0.35 Score=44.04 Aligned_cols=52 Identities=13% Similarity=0.164 Sum_probs=46.3
Q ss_pred CCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637 256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (323)
Q Consensus 256 im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~ 312 (323)
+.++..+++.-+.+|.++...|++....|.||+.++ . . .+.||+-.+|+|++
T Consensus 74 IPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~ed-k-D---~v~GIL~AKDLL~~ 125 (293)
T COG4535 74 IPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED-K-D---HVEGILLAKDLLPF 125 (293)
T ss_pred ccHHHheeccccCCHHHHHHHHHHhccccCCcccCC-c-h---hhhhhhhHHHHHHH
Confidence 457788999999999999999999999999999752 2 2 79999999999998
No 255
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=84.77 E-value=2.9 Score=31.63 Aligned_cols=61 Identities=26% Similarity=0.333 Sum_probs=41.8
Q ss_pred CCeeeEEEEEeeCCC---ceEEEEecc-CCCCCCCCCCCCCCCCCeEEEEEEeCCceEEEEEEE-c-Ceeec
Q 020637 17 GSILVPVRFIWPNGG---RRVSLSGSF-TRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYV-D-GEWRH 82 (323)
Q Consensus 17 ~~~~~~v~F~w~~~~---~~V~l~Gsf-~~W~~~~~m~~~~~~~g~~~~~~~LppG~y~YkFiV-D-G~w~~ 82 (323)
.+....+.+.+.+++ ..|.|.++= .+| .+|++.- ...|.+.-.++.|-+.+|+.. | |++..
T Consensus 10 ~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W---~~m~r~w--Ga~W~~~~~~~~~pls~Rvts~~~G~~vv 76 (82)
T PF01357_consen 10 NPYYLAVLVKNVGGDGDIKAVEVKQSGSGNW---IPMKRSW--GAVWQIDSNPPGGPLSFRVTSGDSGQTVV 76 (82)
T ss_dssp BTTEEEEEEEECCTTS-EEEEEEEETTSSS----EE-EEEC--TTEEEEE-SS--SSEEEEEEETTTSEEEE
T ss_pred CCcEEEEEEEEcCCCccEEEEEEEeCCCCCc---eEeecCc--CceEEECCCCcCCCEEEEEEEcCCCeEEE
Confidence 466677777777543 689998444 468 5898875 579999887777889999988 7 87765
No 256
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=81.96 E-value=1.6 Score=45.64 Aligned_cols=45 Identities=24% Similarity=0.402 Sum_probs=32.6
Q ss_pred CCeeeEEEEE-eeCCCceEEEEeccCCCCCCC-CCC-CCCCCCCeEEEEEE
Q 020637 17 GSILVPVRFI-WPNGGRRVSLSGSFTRWSEPM-PMS-PSEGCPAVFQIICR 64 (323)
Q Consensus 17 ~~~~~~v~F~-w~~~~~~V~l~Gsf~~W~~~~-~m~-~~~~~~g~~~~~~~ 64 (323)
++..+ |+|+ |.+.++.|.++|+||+|+... .|. +++ .|.|++.++
T Consensus 110 ~~d~~-v~~~ewaP~a~~~s~~gd~n~W~~~~~~~~~k~~--~g~w~i~l~ 157 (757)
T KOG0470|consen 110 TPDGR-VDFTEWAPLAEAVSLIGDFNNWNPSSNELKPKDD--LGVWEIDLP 157 (757)
T ss_pred cCCCc-eeeeeecccccccccccccCCCCCcccccCcccc--cceeEEecC
Confidence 44444 5554 667899999999999999852 444 433 789988876
No 257
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=81.12 E-value=1.1 Score=46.96 Aligned_cols=59 Identities=8% Similarity=0.060 Sum_probs=50.1
Q ss_pred CCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc--ccc
Q 020637 253 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC--KHF 315 (323)
Q Consensus 253 ~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~--~~f 315 (323)
+.++|-+++.++..+.+..|.-+.+....++-+|+||+ .++. -|+|.+.++.+.+. +|+
T Consensus 590 VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s-~esm---iLlGSV~R~~L~~ll~~~i 650 (931)
T KOG0476|consen 590 VEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVES-KESM---ILLGSVARRYLTALLQRHI 650 (931)
T ss_pred eeeeccccceeeeccCcHHHHHHHHHhCccceeccccC-cccc---eeeehhHHHHHHHHHHhhc
Confidence 34689999999999999999998888777999999997 2333 79999999999888 554
No 258
>PLN03244 alpha-amylase; Provisional
Probab=80.44 E-value=1.9 Score=45.90 Aligned_cols=46 Identities=24% Similarity=0.420 Sum_probs=35.7
Q ss_pred eEEEEEeeCCCceEEEEeccCCCCCCCC------CCCCCCCCCeEEEEEE--eCCc
Q 020637 21 VPVRFIWPNGGRRVSLSGSFTRWSEPMP------MSPSEGCPAVFQIICR--LPPG 68 (323)
Q Consensus 21 ~~v~F~w~~~~~~V~l~Gsf~~W~~~~~------m~~~~~~~g~~~~~~~--LppG 68 (323)
.-.--.|.+||.--.|+|+||+|.++.. |.+++ =|+|.+.++ |..|
T Consensus 132 ~~~~~ewapga~~~~~~gdfn~w~~~~~~~r~~~~~~~~--~g~~~~~~~~~~~~~ 185 (872)
T PLN03244 132 RVDFMDWAPGARYCAIIGDFNGWSPTENAAREGHFGHDD--YGYWFIILEDKLREG 185 (872)
T ss_pred CceeEeecCCcceeeeeccccCCCccccccccccccccc--cceEEEEechhhhcC
Confidence 3445579999999999999999998632 44554 689999986 6666
No 259
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=78.56 E-value=7.6 Score=43.81 Aligned_cols=56 Identities=18% Similarity=0.269 Sum_probs=41.7
Q ss_pred eEEEEEee-CCCceEEEEeccCCCCCC----CCCCCCCCCCCeEEEEEE-eCCceEEEEEEEcCee
Q 020637 21 VPVRFIWP-NGGRRVSLSGSFTRWSEP----MPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEW 80 (323)
Q Consensus 21 ~~v~F~w~-~~~~~V~l~Gsf~~W~~~----~~m~~~~~~~g~~~~~~~-LppG~y~YkFiVDG~w 80 (323)
--|+|+.- ..|++|.|+ -|++|... ++|... ..++|.+.+. +.+|. .|+|.|+|.|
T Consensus 23 ~gv~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~~--~g~vW~~~i~~~~~g~-~Ygyrv~g~~ 84 (1221)
T PRK14510 23 GGVNLALFSGAAERVEFC-LFDLWGVREEARIKLPGR--TGDVWHGFIVGVGPGA-RYGNRQEGPG 84 (1221)
T ss_pred CeEEEEEECCCCCEEEEE-EEECCCCCeeEEEECCCC--cCCEEEEEEccCCCCc-EEEEEeccCC
Confidence 35788764 579999997 78888543 466543 3689999876 78887 6999999854
No 260
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=78.27 E-value=2.6 Score=34.02 Aligned_cols=60 Identities=17% Similarity=0.161 Sum_probs=40.9
Q ss_pred CCeeeEEEEEee-CCCceEEEE-eccCCC----CC-CCCCCCCC--CCCCeEEEEEEeCCceEEEEEEE
Q 020637 17 GSILVPVRFIWP-NGGRRVSLS-GSFTRW----SE-PMPMSPSE--GCPAVFQIICRLPPGHHQYKFYV 76 (323)
Q Consensus 17 ~~~~~~v~F~w~-~~~~~V~l~-Gsf~~W----~~-~~~m~~~~--~~~g~~~~~~~LppG~y~YkFiV 76 (323)
....+.++|+-. +..++|.|. |+-.+| .. ..+|++.. +.-..|+++++++..+..|.|.|
T Consensus 19 ~~~~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~r~~Y~F~l 87 (120)
T PF02903_consen 19 DGDTLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPEKRLRYYFEL 87 (120)
T ss_dssp CTTEEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TTSEEEEEEEE
T ss_pred CCCEEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCCCeEEEEEEE
Confidence 455677777775 357899985 776666 11 24787653 22348899999999999999998
No 261
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=78.23 E-value=3.7 Score=39.95 Aligned_cols=59 Identities=10% Similarity=0.144 Sum_probs=51.3
Q ss_pred cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHH
Q 020637 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL 214 (323)
Q Consensus 155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l 214 (323)
.+--|++..-.++..+...+|+..-+..|.+++-+-+.|+|+ =|.+.|++|..|++..+
T Consensus 265 ~~k~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDE-YG~i~GLVTLEDIlEEI 323 (423)
T COG4536 265 FTKEDILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDE-YGDIQGLVTLEDILEEI 323 (423)
T ss_pred ccHhHHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEec-cCcEEeeeeHHHHHHHH
Confidence 445566666688999999999999999999999999999995 79999999999998754
No 262
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=77.18 E-value=8.6 Score=31.80 Aligned_cols=48 Identities=17% Similarity=0.300 Sum_probs=32.6
Q ss_pred EEEEEeeCC-CceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEEeCCceEEEE
Q 020637 22 PVRFIWPNG-GRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYK 73 (323)
Q Consensus 22 ~v~F~w~~~-~~~V~l~Gsf~~W~~~~~m~~~~~~~g~~~~~~~LppG~y~Yk 73 (323)
+|+|.|... +.+|...++..-|... .+.-. .+..|+.+++- ||.|.|+
T Consensus 63 TVtw~~~d~~~Hnv~~~~~~~~~g~~-~~~~~--~~~s~~~Tfe~-~G~Y~Y~ 111 (128)
T COG3794 63 TVTWVNTDSVGHNVTAVGGMDPEGSG-TLKAG--INESFTHTFET-PGEYTYY 111 (128)
T ss_pred EEEEEECCCCCceEEEeCCCCccccc-ccccC--CCcceEEEecc-cceEEEE
Confidence 578888876 8999999888544332 22211 14567777774 9999985
No 263
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=69.34 E-value=8.8 Score=36.88 Aligned_cols=49 Identities=20% Similarity=0.394 Sum_probs=40.9
Q ss_pred CCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (323)
Q Consensus 165 ~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~ 215 (323)
..+.+++.++++.+-+....+... .+||+|+ +++++|+++...++..|.
T Consensus 335 ~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde-~~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 335 DDVLTVDADTPLSEILARIRQAPC-PVAVVDE-DGRYVGIISRGELLEALA 383 (386)
T ss_pred ccccccCccchHHHHHHHHhcCCC-ceeEEcC-CCcEEEEecHHHHHHHHh
Confidence 467788999999998888887764 6789995 899999999999987664
No 264
>PLN02877 alpha-amylase/limit dextrinase
Probab=68.12 E-value=19 Score=39.49 Aligned_cols=63 Identities=17% Similarity=0.279 Sum_probs=39.8
Q ss_pred EEEEE-eeCCCceEEEEeccCCCC---C--CCCCCCCCCCCCeEEEEEEe-CCceEEEEEEEc------Ce----eecCC
Q 020637 22 PVRFI-WPNGGRRVSLSGSFTRWS---E--PMPMSPSEGCPAVFQIICRL-PPGHHQYKFYVD------GE----WRHDE 84 (323)
Q Consensus 22 ~v~F~-w~~~~~~V~l~Gsf~~W~---~--~~~m~~~~~~~g~~~~~~~L-ppG~y~YkFiVD------G~----w~~d~ 84 (323)
.++|+ |.+.|++|.|+- |++|. + ..+|+ . ..|+|++.++- ..| +.|+|.|+ |. .+.||
T Consensus 223 g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~-~--~~GVWsv~v~~~~~G-~~Y~Y~V~v~~p~~g~~~~~~v~DP 297 (970)
T PLN02877 223 AVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLK-E--SNGVWSVEGPKSWEG-CYYVYEVSVYHPSTGKVETCYANDP 297 (970)
T ss_pred CEEEEEECCCCCEEEEEE-ecCCCCccceEEeccc-C--CCCEEEEEeccCCCC-CeeEEEEeecccCCCcccccccCCc
Confidence 46675 567899999984 55543 2 24676 2 37999999873 344 45777775 32 24677
Q ss_pred CCCee
Q 020637 85 NQPHV 89 (323)
Q Consensus 85 ~~p~~ 89 (323)
.....
T Consensus 298 YA~al 302 (970)
T PLN02877 298 YARGL 302 (970)
T ss_pred cceEE
Confidence 65544
No 265
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=66.06 E-value=10 Score=39.22 Aligned_cols=54 Identities=11% Similarity=0.198 Sum_probs=45.4
Q ss_pred cccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHH
Q 020637 157 VYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL 214 (323)
Q Consensus 157 ~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l 214 (323)
-.++|+. .++++...+|..-.++++++-|++..-|.. .|++.|+||..|++...
T Consensus 641 lk~il~~--tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~--~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 641 LKDILDM--TPFTVTDLTPMETVVDLFRKLGLRQILVTK--NGILLGIITKKDCLRHT 694 (696)
T ss_pred ceeeccC--CcccccccCcHHHHHHHHHhhCceEEEEcc--CCeeEeeeehHHHHHhh
Confidence 4456753 468899999999999999999999998874 68999999999997543
No 266
>PRK10785 maltodextrin glucosidase; Provisional
Probab=64.82 E-value=25 Score=36.52 Aligned_cols=63 Identities=14% Similarity=0.179 Sum_probs=42.4
Q ss_pred CCeeeEEEEEeeCC--CceEEEEeccCCCCCCCCCCCCCCCC--CeEEEEEEeC--CceEEEEEEE--cCe
Q 020637 17 GSILVPVRFIWPNG--GRRVSLSGSFTRWSEPMPMSPSEGCP--AVFQIICRLP--PGHHQYKFYV--DGE 79 (323)
Q Consensus 17 ~~~~~~v~F~w~~~--~~~V~l~Gsf~~W~~~~~m~~~~~~~--g~~~~~~~Lp--pG~y~YkFiV--DG~ 79 (323)
....+.++++.+.+ .++|.|.-.+++.....+|++....+ ..|+++++++ ++++.|.|.+ +|.
T Consensus 17 ~~~~~~~~lr~~~~~~~~~v~l~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~Y~F~l~~~~~ 87 (598)
T PRK10785 17 SKDQLLITLWLTGEDPPQRVMLRCEPDNEEYLLPMEKQRSQPQVTAWRASLPLNSGQPRRRYSFKLLWHDR 87 (598)
T ss_pred CCCEEEEEEEEcCCCceEEEEEEEEcCCCEEEEEeEEeecCCCceEEEEEEEcCCCCceEEEEEEEEeCCE
Confidence 44566777766532 57888876555544446888764222 3599999886 7889999988 553
No 267
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=59.63 E-value=22 Score=34.81 Aligned_cols=40 Identities=13% Similarity=0.182 Sum_probs=28.0
Q ss_pred EEeccCCCCCCCCCCCCCCCCCeEEEEEE--eCCceEEEEEEEcC
Q 020637 36 LSGSFTRWSEPMPMSPSEGCPAVFQIICR--LPPGHHQYKFYVDG 78 (323)
Q Consensus 36 l~Gsf~~W~~~~~m~~~~~~~g~~~~~~~--LppG~y~YkFiVDG 78 (323)
+.|+|.+= ...+.... .+|.|+..++ .+||.|+.++.+||
T Consensus 153 vvg~f~Dd--G~g~DE~p-~DGvFT~~l~l~~~~G~Y~~~v~~~n 194 (374)
T TIGR03503 153 VVGEFEDD--GEGLDERP-GDGIFTGEFNLDVAPGEYRPTYQSRN 194 (374)
T ss_pred EEEeeccC--CccCCCCC-CCceEEEEeeccCCCceEEEEEEEcC
Confidence 56777543 22333222 3799998865 68999999999998
No 268
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=57.34 E-value=7.4 Score=40.15 Aligned_cols=46 Identities=22% Similarity=0.504 Sum_probs=31.9
Q ss_pred CCCCCCCCCCCCCCCCeEEEEEEeCCc-eEEEEEEEcC----eeecCCCCCe
Q 020637 42 RWSEPMPMSPSEGCPAVFQIICRLPPG-HHQYKFYVDG----EWRHDENQPH 88 (323)
Q Consensus 42 ~W~~~~~m~~~~~~~g~~~~~~~LppG-~y~YkFiVDG----~w~~d~~~p~ 88 (323)
.|.. +.+.|..-.+|.|.+.++.+|| .|.|+|.|++ .|-+......
T Consensus 84 hWhG-v~q~kn~w~DG~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~ 134 (563)
T KOG1263|consen 84 HWHG-VRQRKNPWQDGVYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQ 134 (563)
T ss_pred Eecc-ccccCCccccCCccccCCcCCCCeEEEEEEeCCcceeEEEeeccccc
Confidence 3654 4555554336788899999999 4999999995 3555544443
No 269
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=57.16 E-value=17 Score=38.55 Aligned_cols=60 Identities=15% Similarity=0.176 Sum_probs=51.0
Q ss_pred ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCC-CeEEEEEehHHHHHHHH
Q 020637 154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFK-GRFVGVLSALDFILILR 215 (323)
Q Consensus 154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~-~~~vGilT~~D~i~~l~ 215 (323)
...+.++| -++|..+..++|.++.-++|...-++++|++|+.+ .-++|.|..+-++..|.
T Consensus 587 ~v~VE~iM--V~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~ 647 (931)
T KOG0476|consen 587 TVKVEHIM--VTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQ 647 (931)
T ss_pred EEEeeeec--cccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHH
Confidence 35578899 58899999999999999999988899999998754 56889999999887654
No 270
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=55.68 E-value=74 Score=33.18 Aligned_cols=104 Identities=16% Similarity=0.220 Sum_probs=63.9
Q ss_pred HHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCC-CCCCChhhhhhhhHHHHHHHHHHhhcccccCCCC
Q 020637 176 VKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTN-GSNLTEEELETHTISAWKVGKLQLNLKRQMDGNG 254 (323)
Q Consensus 176 v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~-~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~ 254 (323)
+.+.++.|...+ -.+.+.|. +|.++.+....+++..+...... +..+.++...+.-+.. .
T Consensus 61 l~~l~~~l~~~~-~~~~l~D~-~G~vL~~~g~~~~~~~~~~~~~~~G~~w~E~~~GTnaig~------a----------- 121 (638)
T PRK11388 61 LEDAWEYMADRE-CALLILDE-TGCILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTNALSL------A----------- 121 (638)
T ss_pred HHHHHHHhcCCC-cEEEEEcC-CceEEEEeCCHHHHHHHHHcCCccCCccchhccCcCHHHH------H-----------
Confidence 566677777677 68889995 89999999999988766543221 2222222222221110 0
Q ss_pred CCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccc
Q 020637 255 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSD 308 (323)
Q Consensus 255 ~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~d 308 (323)
+....++.|.......+. +....+...||.|. + | +++|+|+.+-
T Consensus 122 -l~~~~pv~v~g~EH~~~~---~~~~~c~aaPI~d~--~-G---~liGvl~l~~ 165 (638)
T PRK11388 122 -AISGQPVKTMGDQHFKQA---LHNWAFCATPVFDS--K-G---RLTGTIALAC 165 (638)
T ss_pred -HhcCCceEEecHHHHHHh---ccCceEEeeEEEcC--C-C---CEEEEEEEEe
Confidence 123444566655555444 44567789999985 3 5 7999997543
No 271
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=49.58 E-value=38 Score=29.86 Aligned_cols=39 Identities=31% Similarity=0.721 Sum_probs=21.8
Q ss_pred CCCCCCCCCCCCCCCCCeEEEEEEeC-CceEEEEEE--EcC--eeec
Q 020637 41 TRWSEPMPMSPSEGCPAVFQIICRLP-PGHHQYKFY--VDG--EWRH 82 (323)
Q Consensus 41 ~~W~~~~~m~~~~~~~g~~~~~~~Lp-pG~y~YkFi--VDG--~w~~ 82 (323)
..|+. .||+... +..|...+.+. +|.|+|+.. +|- .|++
T Consensus 55 ~~w~~-vpM~~~g--nDrW~a~f~~~~~G~~~f~VeAW~D~faTW~~ 98 (187)
T PF11896_consen 55 REWQE-VPMTPLG--NDRWEASFTPDRPGRYEFRVEAWVDHFATWRH 98 (187)
T ss_dssp -B-----B-EEST--S-EEEEEEE--SSEEEEEEEEEEE-HHHHHHH
T ss_pred Cccee-eccccCC--CCEEEEEEECCCceeEEEEEEEEeccHHHHHH
Confidence 35876 7999874 78999998764 599999876 352 4555
No 272
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=48.25 E-value=68 Score=25.93 Aligned_cols=48 Identities=15% Similarity=0.168 Sum_probs=23.6
Q ss_pred eEEEEEeeCCCceEEEE-eccCCCCCCCCCCCCCCCCCeEEEEEEeCCceEEEE
Q 020637 21 VPVRFIWPNGGRRVSLS-GSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYK 73 (323)
Q Consensus 21 ~~v~F~w~~~~~~V~l~-Gsf~~W~~~~~m~~~~~~~g~~~~~~~LppG~y~Yk 73 (323)
-+|+|.|...+..|... +..- +... .... +.+..|+.++. .||.|.|.
T Consensus 23 dTV~f~n~d~~Hnv~~~~~~~p-~g~~-~~~s--~~g~~~~~tF~-~~G~Y~Y~ 71 (116)
T TIGR02375 23 DTVTFVPTDKGHNVETIKGMIP-EGAE-AFKS--KINEEYTVTVT-EEGVYGVK 71 (116)
T ss_pred CEEEEEECCCCeeEEEccCCCc-CCcc-cccC--CCCCEEEEEeC-CCEEEEEE
Confidence 35788887766665542 2111 1000 1111 11345666665 56777774
No 273
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=45.47 E-value=25 Score=27.32 Aligned_cols=17 Identities=18% Similarity=0.383 Sum_probs=10.4
Q ss_pred CCeEEEEE-EeCCceEEE
Q 020637 56 PAVFQIIC-RLPPGHHQY 72 (323)
Q Consensus 56 ~g~~~~~~-~LppG~y~Y 72 (323)
+..+++++ .++||.|+|
T Consensus 73 g~~~~~~f~~~~~G~y~~ 90 (104)
T PF13473_consen 73 GETATVTFTPLKPGEYEF 90 (104)
T ss_dssp T-EEEEEEEE-S-EEEEE
T ss_pred CCEEEEEEcCCCCEEEEE
Confidence 34566665 789999988
No 274
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=45.12 E-value=45 Score=25.60 Aligned_cols=32 Identities=25% Similarity=0.501 Sum_probs=24.1
Q ss_pred CCeEEEEEEeCCceEEEEEEEcCeeecCCCCCe
Q 020637 56 PAVFQIICRLPPGHHQYKFYVDGEWRHDENQPH 88 (323)
Q Consensus 56 ~g~~~~~~~LppG~y~YkFiVDG~w~~d~~~p~ 88 (323)
+|.=++.+.|+||+|....+. |.+.+-|..|.
T Consensus 50 ~Gqte~~I~L~PG~htLtl~~-~d~~h~~~~~~ 81 (87)
T PF14347_consen 50 KGQTELNIELPPGKHTLTLQL-GDGDHVPHDPP 81 (87)
T ss_pred CCEEEEEEEeCCCCEEEEEEe-CCCCcccCCCc
Confidence 567788899999999999887 44555555543
No 275
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=43.00 E-value=33 Score=34.96 Aligned_cols=124 Identities=15% Similarity=0.196 Sum_probs=83.3
Q ss_pred hccccccccccCCCCCeEEEecchhHH-HHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhh
Q 020637 151 FLSTHTVYELLPDSGKVTALDVNLAVK-QAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEEL 229 (323)
Q Consensus 151 ~l~~~~~~dvmp~s~~vv~vd~~~~v~-~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l 229 (323)
-+....+.|+|.....+..++.+..+. +......++|.+..||.+.+....+|.+=...++.++... .+++
T Consensus 200 ~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~----~~~~---- 271 (498)
T KOG2118|consen 200 ELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVE----VPLE---- 271 (498)
T ss_pred HHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhccc----cccc----
Confidence 345677888898888888888888887 5555566999999999987554544442112222211100 0110
Q ss_pred hhhhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccc
Q 020637 230 ETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDI 309 (323)
Q Consensus 230 ~~~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dI 309 (323)
. ..+ ...+...+.-+..++++.+....|.+.+.|..-|... . --++++|..|+
T Consensus 272 -~---~~v----------------~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~~---~----~~~~~~~l~~~ 324 (498)
T KOG2118|consen 272 -P---LPV----------------SESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRNG---H----VDIFVLTLEDL 324 (498)
T ss_pred -c---ccc----------------hhhhccccccCCCcccHHHHHHHHhhhhceeEEEecC---C----cceeeEeccch
Confidence 0 011 1135666778899999999999999999988888863 2 36899998886
No 276
>PLN00115 pollen allergen group 3; Provisional
Probab=42.89 E-value=85 Score=25.55 Aligned_cols=47 Identities=17% Similarity=0.319 Sum_probs=32.4
Q ss_pred CceEEEEecc-CCCCCCCCCCCCCCCCCeEEEEEE-eCCceEEEEEEEc-Ceee
Q 020637 31 GRRVSLSGSF-TRWSEPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD-GEWR 81 (323)
Q Consensus 31 ~~~V~l~Gsf-~~W~~~~~m~~~~~~~g~~~~~~~-LppG~y~YkFiVD-G~w~ 81 (323)
-.+|.|.++= .+|. .+|++.- +..|++.-. .+.|-+.+||... |.+.
T Consensus 47 I~~V~Ik~~g~~~W~--~~M~rsw--GavW~~~s~~pl~GPlS~R~t~~~G~~~ 96 (118)
T PLN00115 47 ISEVEIKEKGAKDWV--DDLKESS--TNTWTLKSKAPLKGPFSVRFLVKGGGYR 96 (118)
T ss_pred EEEEEEeecCCCccc--CccccCc--cceeEecCCCCCCCceEEEEEEeCCCEE
Confidence 3778888762 3682 1798865 568988654 3457899999885 6543
No 277
>PRK10301 hypothetical protein; Provisional
Probab=39.61 E-value=1e+02 Score=25.07 Aligned_cols=74 Identities=16% Similarity=0.142 Sum_probs=39.1
Q ss_pred CCCCCCCCCCcc----------CCeeeEEEEEeeC--CCceEEEEeccC-CCCCCCCCCCCCCCCCeEEEEE--EeCCce
Q 020637 5 GLNTGHENSGVV----------GSILVPVRFIWPN--GGRRVSLSGSFT-RWSEPMPMSPSEGCPAVFQIIC--RLPPGH 69 (323)
Q Consensus 5 ~~~~~~~~~~~~----------~~~~~~v~F~w~~--~~~~V~l~Gsf~-~W~~~~~m~~~~~~~g~~~~~~--~LppG~ 69 (323)
+.-++|.-...+ .+..+..+|.=+- ....|.|.+.-- .|... +..........+++.+ .|++|.
T Consensus 22 ~~A~AHa~l~~s~Pa~ga~v~~~P~~V~L~F~e~v~~~~s~i~v~~~~g~~v~~~-~~~~~~~~~~~~~v~l~~~L~~G~ 100 (124)
T PRK10301 22 PAVWAHAHLTHQYPAANAQVTAAPQALTLNFSEGIEPGFSGATITGPKQENIKTL-PAKRNEQDQKQLIVPLADSLKPGT 100 (124)
T ss_pred hhhhhcccccccCCCCCCccccCCCEEEEEcCCCccccccEEEEEcCCCCEeccC-CccccCCCCcEEEEECCCCCCCcc
Confidence 344677766553 2334444443222 235677774422 23221 1111121234567766 388999
Q ss_pred EEEEEEE---cCe
Q 020637 70 HQYKFYV---DGE 79 (323)
Q Consensus 70 y~YkFiV---DG~ 79 (323)
|.-.|.| ||+
T Consensus 101 YtV~Wrvvs~DGH 113 (124)
T PRK10301 101 YTVDWHVVSVDGH 113 (124)
T ss_pred EEEEEEEEecCCC
Confidence 9999987 774
No 278
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=36.10 E-value=1.2e+02 Score=22.46 Aligned_cols=48 Identities=17% Similarity=0.259 Sum_probs=25.8
Q ss_pred EEEEEeeCC-CceEEE-EeccCCCCCCCCCCCCCCCCCeEEEEEEeCCceEEEE
Q 020637 22 PVRFIWPNG-GRRVSL-SGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYK 73 (323)
Q Consensus 22 ~v~F~w~~~-~~~V~l-~Gsf~~W~~~~~m~~~~~~~g~~~~~~~LppG~y~Yk 73 (323)
+|+|++... +.+|.. .|.+.++.-..++-. .+..|+.++. .||.|.|.
T Consensus 20 tVt~~N~d~~~Hnv~~~~g~~~~~~~~~~~~~---~g~~~~~tf~-~~G~y~y~ 69 (83)
T TIGR02657 20 TVTWINREAMPHNVHFVAGVLGEAALKGPMMK---KEQAYSLTFT-EAGTYDYH 69 (83)
T ss_pred EEEEEECCCCCccEEecCCCCccccccccccC---CCCEEEEECC-CCEEEEEE
Confidence 456666543 566654 455544332222221 1346777765 67888874
No 279
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=34.40 E-value=24 Score=29.38 Aligned_cols=54 Identities=19% Similarity=0.228 Sum_probs=34.5
Q ss_pred CCeEEEEEEeCCceEEEEEEEcCeeecCCCCCeee--CCCCccceEEEecCCCCCCCC
Q 020637 56 PAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVS--GNYGVVNCVYIAVPQPDMVPN 111 (323)
Q Consensus 56 ~g~~~~~~~LppG~y~YkFiVDG~w~~d~~~p~~~--d~~G~~nnvl~v~~~~~~~p~ 111 (323)
.|.|. +++.||.|.--..++|.-..-=..-++. ..-|.+|.+|..+.+.+.-|+
T Consensus 46 ~G~Ys--~~~epG~Y~V~l~~~g~~~~~vG~I~V~~dS~pGTLN~fL~~~~e~dl~Pe 101 (134)
T PF08400_consen 46 AGEYS--FDVEPGVYRVTLKVEGRPPVYVGDITVYEDSKPGTLNDFLTAPDEDDLRPE 101 (134)
T ss_pred CceEE--EEecCCeEEEEEEECCCCceeEEEEEEecCCCCCcHHHHhhccccccCCHH
Confidence 56665 5678999999999998521111111222 457999999976555555554
No 280
>PLN03023 Expansin-like B1; Provisional
Probab=34.38 E-value=1.1e+02 Score=28.12 Aligned_cols=54 Identities=19% Similarity=0.340 Sum_probs=37.7
Q ss_pred CeeeEEEEEeeCC-C--ceEEEEec-cCCCCCCCCCCCCCCCCCeEEEEEEeCCceEEEEEEEc
Q 020637 18 SILVPVRFIWPNG-G--RRVSLSGS-FTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVD 77 (323)
Q Consensus 18 ~~~~~v~F~w~~~-~--~~V~l~Gs-f~~W~~~~~m~~~~~~~g~~~~~~~LppG~y~YkFiVD 77 (323)
+....|.+.+.++ + ..|.|.|+ =.+| .+|++.- ..+|+..-. +.|.+.++|.|.
T Consensus 159 p~yl~vlv~~vgG~GdI~~V~Ik~~~~~~W---~~M~rnw--Ga~W~~~~~-l~Gp~slrf~v~ 216 (247)
T PLN03023 159 PDYLAIVMLYQAGQNDILAVEIWQEDCKEW---RGMRKAY--GAVWDMPNP-PKGPITLRFQVS 216 (247)
T ss_pred CceEEEEEEEcCCCccEEEEEEEecCCCCc---eECccCC--cceeEcCCC-CCCceeEEEEEE
Confidence 4456666666553 2 67888884 3578 5798865 458988644 468999999884
No 281
>KOG0045 consensus Cytosolic Ca2+-dependent cysteine protease (calpain), large subunit (EF-Hand protein superfamily) [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.82 E-value=39 Score=35.37 Aligned_cols=26 Identities=31% Similarity=0.800 Sum_probs=21.6
Q ss_pred CCceEEEEEEEcCeee---cCCCCCeeeC
Q 020637 66 PPGHHQYKFYVDGEWR---HDENQPHVSG 91 (323)
Q Consensus 66 ppG~y~YkFiVDG~w~---~d~~~p~~~d 91 (323)
..|.|+|||.++|+|+ .|...|+..+
T Consensus 115 yaGif~f~~w~~G~W~~VvIDD~LP~~~~ 143 (612)
T KOG0045|consen 115 YAGIFHFRFWQNGEWVEVVIDDRLPTSNG 143 (612)
T ss_pred cceEEEEEEEeCCeEEEEEeeeecceEcC
Confidence 4599999999999994 5888888664
No 282
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=33.07 E-value=2.1e+02 Score=23.02 Aligned_cols=17 Identities=18% Similarity=0.323 Sum_probs=11.7
Q ss_pred CCeEEEEEEeCCceEEEE
Q 020637 56 PAVFQIICRLPPGHHQYK 73 (323)
Q Consensus 56 ~g~~~~~~~LppG~y~Yk 73 (323)
+..|+.++. .||.|.|.
T Consensus 83 G~t~s~Tf~-~~G~Y~Y~ 99 (115)
T TIGR03102 83 GTTYEHTFE-EPGIYLYV 99 (115)
T ss_pred CCEEEEEec-CCcEEEEE
Confidence 346777775 67888774
No 283
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=32.94 E-value=1.9e+02 Score=23.93 Aligned_cols=45 Identities=20% Similarity=0.361 Sum_probs=26.8
Q ss_pred ceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEE-----eCCceEEEEEEE---cCeeecCC
Q 020637 32 RRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICR-----LPPGHHQYKFYV---DGEWRHDE 84 (323)
Q Consensus 32 ~~V~l~Gsf~~W~~~~~m~~~~~~~g~~~~~~~-----LppG~y~YkFiV---DG~w~~d~ 84 (323)
+++....+..+. .|.+. -.|...+. |+||.|.++-.+ ++.|....
T Consensus 73 ~k~~~~~~~~~~----~mAPN----S~f~~~i~~~~~~lk~G~Y~l~~~~~~~~~~W~f~k 125 (140)
T PF11797_consen 73 KKVLYTFKKENM----QMAPN----SNFNFPIPLGGKKLKPGKYTLKITAKSGKKTWTFTK 125 (140)
T ss_pred CeEEEEeeccCC----EECCC----CeEEeEecCCCcCccCCEEEEEEEEEcCCcEEEEEE
Confidence 455555554443 34442 34544443 789999999888 34677644
No 284
>PF03370 CBM_21: Putative phosphatase regulatory subunit; InterPro: IPR005036 This family consists of several eukaryotic proteins that are thought to be involved in the regulation of glycogen metabolism. For instance, the mouse PTG protein O08541 from SWISSPROT has been shown to interact with glycogen synthase, phosphorylase kinase, phosphorylase a: these three enzymes have key roles in the regulation of glycogen metabolism. PTG also binds the catalytic subunit of protein phosphatase 1 (PP1C) and localizes it to glycogen. Subsets of similar interactions have been observed with several other members of this family, such as the yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise function of these proteins is not known, they may serve a scaffold function, bringing together the key enzymes in glycogen metabolism. This entry is a carbohydrate binding domain.; GO: 0005515 protein binding; PDB: 2V8M_D 2V8L_A 2VQ4_A 2EEF_A 2DJM_A.
Probab=32.50 E-value=1.6e+02 Score=23.42 Aligned_cols=62 Identities=18% Similarity=0.224 Sum_probs=38.7
Q ss_pred CeeeEEEEEeeCC--CceEEEEeccCCCCCCCCCC----C-----C-CCCCCeEEEEEEeCCc--------eEEEEEEEc
Q 020637 18 SILVPVRFIWPNG--GRRVSLSGSFTRWSEPMPMS----P-----S-EGCPAVFQIICRLPPG--------HHQYKFYVD 77 (323)
Q Consensus 18 ~~~~~v~F~w~~~--~~~V~l~Gsf~~W~~~~~m~----~-----~-~~~~g~~~~~~~LppG--------~y~YkFiVD 77 (323)
...+..++....- .|+|.|.=+||+|.....+. . . ...-..|...++||+. ++--+|.+.
T Consensus 18 ~~~L~G~V~V~NlayeK~V~VryT~D~W~t~~d~~a~y~~~~~~~~~~~~~d~F~F~i~l~~~~~~~~~~lef~I~Y~~~ 97 (113)
T PF03370_consen 18 QQSLSGTVRVRNLAYEKEVTVRYTFDNWRTFSDVPASYVSSCPGPSPSGNYDRFSFSIPLPDLLPPEGGRLEFCIRYEVN 97 (113)
T ss_dssp SSEEEEEEEEE-SSSSEEEEEEEETSCTSSCCEEEEEEEE---EESTTSSEEEEEEEEE-SSE--T-TS-SEEEEEEEET
T ss_pred CCEEEEEEEEEcCCCCeEEEEEEeeCCCCceeEEeeEEeccccCCCCCCcccEEEEEEECCcccccCCceEEEEEEEEeC
Confidence 4455556666653 48899999999997543221 1 1 1112478888888754 466788899
Q ss_pred Ce
Q 020637 78 GE 79 (323)
Q Consensus 78 G~ 79 (323)
|.
T Consensus 98 g~ 99 (113)
T PF03370_consen 98 GQ 99 (113)
T ss_dssp TE
T ss_pred CC
Confidence 85
No 285
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=31.23 E-value=44 Score=23.23 Aligned_cols=25 Identities=36% Similarity=0.775 Sum_probs=14.3
Q ss_pred EEE-EEeCCceEEEEEEE---cCeeecCC
Q 020637 60 QII-CRLPPGHHQYKFYV---DGEWRHDE 84 (323)
Q Consensus 60 ~~~-~~LppG~y~YkFiV---DG~w~~d~ 84 (323)
.+. ..||||.|.++-.+ +|.|..+.
T Consensus 30 ~~~~~~L~~G~Y~l~V~a~~~~~~~~~~~ 58 (66)
T PF07495_consen 30 SISYTNLPPGKYTLEVRAKDNNGKWSSDE 58 (66)
T ss_dssp EEEEES--SEEEEEEEEEEETTS-B-SS-
T ss_pred EEEEEeCCCEEEEEEEEEECCCCCcCccc
Confidence 444 56999999988776 46776654
No 286
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A ....
Probab=30.58 E-value=39 Score=25.88 Aligned_cols=20 Identities=35% Similarity=0.660 Sum_probs=16.8
Q ss_pred HHCCCCeeeeEeCCCCeEEEE
Q 020637 184 YEQGLPMVPLWDDFKGRFVGV 204 (323)
Q Consensus 184 ~~~~i~~lPV~d~~~~~~vGi 204 (323)
...|-++.||+|. +|++|||
T Consensus 101 ~~~G~SGgpv~~~-~G~vvGi 120 (120)
T PF13365_consen 101 TRPGSSGGPVFDS-DGRVVGI 120 (120)
T ss_dssp -STTTTTSEEEET-TSEEEEE
T ss_pred cCCCcEeHhEECC-CCEEEeC
Confidence 3478999999994 8999997
No 287
>PF04459 DUF512: Protein of unknown function (DUF512); InterPro: IPR007549 This is a domain of uncharacterised prokaryotic proteins. It is often found C-terminal to the radical SAM domain (IPR007197 from INTERPRO).
Probab=28.68 E-value=2.1e+02 Score=25.51 Aligned_cols=53 Identities=23% Similarity=0.223 Sum_probs=31.2
Q ss_pred CCCeEEEecch---hHHHHHHHHH---HCCCCeeeeEeC---CCCeEEEEEehHHHHHHHHh
Q 020637 164 SGKVTALDVNL---AVKQAFHVLY---EQGLPMVPLWDD---FKGRFVGVLSALDFILILRE 216 (323)
Q Consensus 164 s~~vv~vd~~~---~v~~A~~~l~---~~~i~~lPV~d~---~~~~~vGilT~~D~i~~l~~ 216 (323)
.+++..+...+ .++++++.+. .-.+.-+||.|. .+=++.|+||..||++.|..
T Consensus 97 ~~~v~ivTG~la~~~l~~~~~~l~~~~~~~v~V~~V~N~fFG~~ItVaGLLTg~Dii~~L~~ 158 (204)
T PF04459_consen 97 PRRVTIVTGVLAYPFLKPLVEKLNRIPGLEVEVVPVKNRFFGGTITVAGLLTGQDIIEQLKG 158 (204)
T ss_pred CeeEEEEeeHHHHHHHHHHHHHHhccCCCeEEEEEeecCCCCCCeEEeeCccHHHHHHHhCc
Confidence 44554444432 2455555551 124566677663 12248899999999987763
No 288
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=28.31 E-value=2.1e+02 Score=19.94 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=18.1
Q ss_pred CCeEEEEEEeCCceEEEEEEE--cCee
Q 020637 56 PAVFQIICRLPPGHHQYKFYV--DGEW 80 (323)
Q Consensus 56 ~g~~~~~~~LppG~y~YkFiV--DG~w 80 (323)
+|.|... .|++|.|..+... +|--
T Consensus 26 ~G~~~f~-~L~~G~Y~l~E~~aP~GY~ 51 (70)
T PF05738_consen 26 NGKYTFK-NLPPGTYTLKETKAPDGYQ 51 (70)
T ss_dssp TSEEEEE-EEESEEEEEEEEETTTTEE
T ss_pred CCEEEEe-ecCCeEEEEEEEECCCCCE
Confidence 5666554 6899999999987 7743
No 289
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=26.00 E-value=76 Score=23.39 Aligned_cols=32 Identities=19% Similarity=0.369 Sum_probs=24.0
Q ss_pred cccccCC-CCCeEEEecchhHHHHHHHHHH-CCC
Q 020637 157 VYELLPD-SGKVTALDVNLAVKQAFHVLYE-QGL 188 (323)
Q Consensus 157 ~~dvmp~-s~~vv~vd~~~~v~~A~~~l~~-~~i 188 (323)
|.-.+|. ++.+|.+.++.++++++..+-+ +|+
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l 35 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGL 35 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCC
Confidence 4455776 6778899999999999976654 444
No 290
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=25.98 E-value=63 Score=25.56 Aligned_cols=17 Identities=35% Similarity=0.931 Sum_probs=12.5
Q ss_pred eeeeEeCCCCeEEEEEeh
Q 020637 190 MVPLWDDFKGRFVGVLSA 207 (323)
Q Consensus 190 ~lPV~d~~~~~~vGilT~ 207 (323)
.+||.|. +|+++|+|+.
T Consensus 93 ~~PV~d~-~g~viG~V~V 109 (116)
T PF14827_consen 93 FAPVYDS-DGKVIGVVSV 109 (116)
T ss_dssp EEEEE-T-TS-EEEEEEE
T ss_pred EEeeECC-CCcEEEEEEE
Confidence 5899985 7899999974
No 291
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=25.31 E-value=2.1e+02 Score=20.16 Aligned_cols=41 Identities=27% Similarity=0.505 Sum_probs=27.6
Q ss_pred EEEEeeCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEE-EeCCceEEEEEEEcC
Q 020637 23 VRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIIC-RLPPGHHQYKFYVDG 78 (323)
Q Consensus 23 v~F~w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~g~~~~~~-~LppG~y~YkFiVDG 78 (323)
+.+.-...+-+|+|-|.+-+ ..|+ .+ .|++|.|.+++.-+|
T Consensus 4 l~V~s~p~gA~V~vdg~~~G---~tp~------------~~~~l~~G~~~v~v~~~G 45 (71)
T PF08308_consen 4 LRVTSNPSGAEVYVDGKYIG---TTPL------------TLKDLPPGEHTVTVEKPG 45 (71)
T ss_pred EEEEEECCCCEEEECCEEec---cCcc------------eeeecCCccEEEEEEECC
Confidence 34444566788999887766 2222 22 278888888888888
No 292
>TIGR03009 plancto_dom_2 Planctomycetes uncharacterized domain TIGR03009. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to four proteins per genome. The function is unknown.
Probab=24.13 E-value=91 Score=28.02 Aligned_cols=17 Identities=12% Similarity=0.301 Sum_probs=12.0
Q ss_pred EEE-cC--eeecCCCCCeee
Q 020637 74 FYV-DG--EWRHDENQPHVS 90 (323)
Q Consensus 74 FiV-DG--~w~~d~~~p~~~ 90 (323)
.+| || .|.+||+...++
T Consensus 66 ~iVsDGk~lW~YDpdleQVT 85 (210)
T TIGR03009 66 AWICNGTAVYAYNGLAKTVT 85 (210)
T ss_pred EEEECCCEEEEECCChhhEE
Confidence 455 88 499999876544
No 293
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=23.07 E-value=93 Score=24.27 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=26.7
Q ss_pred HHHHHHHHHCCCCeeeeE---eCCCCeE----EEEEehHHHHHHHHh
Q 020637 177 KQAFHVLYEQGLPMVPLW---DDFKGRF----VGVLSALDFILILRE 216 (323)
Q Consensus 177 ~~A~~~l~~~~i~~lPV~---d~~~~~~----vGilT~~D~i~~l~~ 216 (323)
.++.+++...++.++|.+ |..+|++ .|-++..+|+..|..
T Consensus 63 ~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~ 109 (114)
T cd02958 63 SEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIE 109 (114)
T ss_pred ccHHHHHHHhCccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHH
Confidence 466777777777776654 6534544 488888888776654
No 294
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=22.91 E-value=94 Score=23.13 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=24.0
Q ss_pred cccccCC-CCCeEEEecchhHHHHHHHHHHC
Q 020637 157 VYELLPD-SGKVTALDVNLAVKQAFHVLYEQ 186 (323)
Q Consensus 157 ~~dvmp~-s~~vv~vd~~~~v~~A~~~l~~~ 186 (323)
|.-.+|. ++-+|.+.+..+|++++..+.+.
T Consensus 2 crV~LPdg~~T~V~vrpG~ti~d~L~kllek 32 (73)
T cd01817 2 CRVILPDGSTTVVPTRPGESIRDLLSGLCEK 32 (73)
T ss_pred cEEECCCCCeEEEEecCCCCHHHHHHHHHHH
Confidence 4455777 78899999999999998766654
No 295
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=22.78 E-value=99 Score=22.37 Aligned_cols=17 Identities=41% Similarity=1.003 Sum_probs=13.7
Q ss_pred eeeeEeCCCCeEEEEEeh
Q 020637 190 MVPLWDDFKGRFVGVLSA 207 (323)
Q Consensus 190 ~lPV~d~~~~~~vGilT~ 207 (323)
+.||.|. .++++|++..
T Consensus 18 s~pi~~~-~g~~~Gvv~~ 34 (81)
T PF02743_consen 18 SVPIYDD-DGKIIGVVGI 34 (81)
T ss_dssp EEEEEET-TTEEEEEEEE
T ss_pred EEEEECC-CCCEEEEEEE
Confidence 5799994 7899999764
No 296
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=21.84 E-value=1.7e+02 Score=22.36 Aligned_cols=17 Identities=18% Similarity=0.214 Sum_probs=11.2
Q ss_pred EEEEEeeC-CCceEEEEe
Q 020637 22 PVRFIWPN-GGRRVSLSG 38 (323)
Q Consensus 22 ~v~F~w~~-~~~~V~l~G 38 (323)
+|+|.|.. .+.++.+..
T Consensus 26 tV~~~n~~~~~Hnv~~~~ 43 (99)
T PF00127_consen 26 TVTFVNNDSMPHNVVFVA 43 (99)
T ss_dssp EEEEEEESSSSBEEEEET
T ss_pred EEEEEECCCCCceEEEec
Confidence 57788864 466776664
No 297
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=21.74 E-value=1.1e+02 Score=23.29 Aligned_cols=52 Identities=12% Similarity=0.141 Sum_probs=35.7
Q ss_pred HHHHHHHHhhhhhcc--ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCee
Q 020637 139 ADLQLSRDRISSFLS--THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMV 191 (323)
Q Consensus 139 ~~l~~~~~~~~~~l~--~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~l 191 (323)
+++-++.+..-++.. ..|..=+=. -++.++++++.-|.+|+++...|+=..|
T Consensus 23 e~L~~~v~~~c~~~~~q~ft~kw~DE-EGDp~tiSS~~EL~EA~rl~~~n~~~~l 76 (83)
T cd06404 23 EELCNEVRDMCRFHNDQPFTLKWIDE-EGDPCTISSQMELEEAFRLYELNKDSEL 76 (83)
T ss_pred HHHHHHHHHHhCCCCCCcEEEEEECC-CCCceeecCHHHHHHHHHHHHhcCcccE
Confidence 445555555555553 344444333 5899999999999999999998875544
No 298
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.
Probab=21.68 E-value=3.7e+02 Score=20.45 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=14.3
Q ss_pred CCeEEEEEEeC---CceEEEEEE
Q 020637 56 PAVFQIICRLP---PGHHQYKFY 75 (323)
Q Consensus 56 ~g~~~~~~~Lp---pG~y~YkFi 75 (323)
-|.|+.++.++ ||.|...-.
T Consensus 57 ~g~F~~tv~~~~~~~~~g~l~v~ 79 (88)
T PF10648_consen 57 WGPFEGTVSFPPPPPGKGTLEVF 79 (88)
T ss_pred ccceEEEEEeCCCCCCceEEEEE
Confidence 57899999877 676655443
No 299
>cd00912 ML The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of unknown function in plants, animals and fungi. These single-domain proteins form two anti-parallel beta-pleated sheets stabilized by three disulfide bonds and with an accessible central hydrophobic cavity, and are predicted to mediate diverse biological functions through interaction with specific lipids.
Probab=21.30 E-value=2.7e+02 Score=22.24 Aligned_cols=60 Identities=20% Similarity=0.128 Sum_probs=33.5
Q ss_pred CCeeeEEEEEeeCCC--ceEEEEeccCCCCCCCCCCCCCCCCCeE--EEEEEeCCc-eEEEEEEE
Q 020637 17 GSILVPVRFIWPNGG--RRVSLSGSFTRWSEPMPMSPSEGCPAVF--QIICRLPPG-HHQYKFYV 76 (323)
Q Consensus 17 ~~~~~~v~F~w~~~~--~~V~l~Gsf~~W~~~~~m~~~~~~~g~~--~~~~~LppG-~y~YkFiV 76 (323)
+...+.+.|+-+... -++.|.+.+.+..-..++...+..+..+ -..++|.+| .|.|++-+
T Consensus 30 ~~~~i~~~f~~~~~~~~~~~~v~~~~~gi~~p~~~~~~d~C~~~~~~~~~CPl~~G~~~~~~~~~ 94 (127)
T cd00912 30 GNYNLSVTGTLREDIKSLYVDLALMSQGIKVLNPDNSYDFCEAGLPKPSFCPLRKGQQYSYAKTV 94 (127)
T ss_pred CeEEEEEEEEECccccEEEEEEEEEECCEEeccCCCCCCcccccCcccccCCcCCCCEEEEEEEE
Confidence 444666666665532 2677777766543222322333333333 256899999 78777754
No 300
>COG3397 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.30 E-value=4.4e+02 Score=24.95 Aligned_cols=31 Identities=16% Similarity=0.502 Sum_probs=20.4
Q ss_pred eEEEEEeeCCC----c--eEEEEeccCCCCCCCCCCCCC
Q 020637 21 VPVRFIWPNGG----R--RVSLSGSFTRWSEPMPMSPSE 53 (323)
Q Consensus 21 ~~v~F~w~~~~----~--~V~l~Gsf~~W~~~~~m~~~~ 53 (323)
=+.+|+|...+ . ++|| +-.+|++..||++++
T Consensus 114 G~~~f~w~~TapH~t~~w~yYi--TK~~wdpnkPLt~~d 150 (308)
T COG3397 114 GPQTFVWKATAPHNTAYWKYYI--TKPGWDPNKPLTWDD 150 (308)
T ss_pred CceEEEEEeecCCCCcceEEEE--CCCCCCCCCCccHHh
Confidence 35688887533 2 4555 456898888887664
No 301
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=21.29 E-value=58 Score=25.83 Aligned_cols=18 Identities=17% Similarity=0.608 Sum_probs=13.9
Q ss_pred CceEEEEEEEcCeeecCCC
Q 020637 67 PGHHQYKFYVDGEWRHDEN 85 (323)
Q Consensus 67 pG~y~YkFiVDG~w~~d~~ 85 (323)
-|-|+|.|. ||.|++.-+
T Consensus 66 ~G~~hf~~~-~~~W~~~r~ 83 (105)
T cd00503 66 VGGYHFDYK-NGKWICTRS 83 (105)
T ss_pred CCCccceec-CCEEEECCC
Confidence 377888884 999998754
No 302
>PRK02710 plastocyanin; Provisional
Probab=21.19 E-value=2.9e+02 Score=22.02 Aligned_cols=14 Identities=14% Similarity=0.226 Sum_probs=6.9
Q ss_pred eEEEEEEeCCceEEE
Q 020637 58 VFQIICRLPPGHHQY 72 (323)
Q Consensus 58 ~~~~~~~LppG~y~Y 72 (323)
.|+.+..- ||.|.|
T Consensus 89 t~~~tF~~-~G~y~y 102 (119)
T PRK02710 89 SWEETFSE-AGTYTY 102 (119)
T ss_pred EEEEEecC-CEEEEE
Confidence 45544442 555554
No 303
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=20.53 E-value=78 Score=23.68 Aligned_cols=47 Identities=17% Similarity=0.283 Sum_probs=28.3
Q ss_pred EEEEEeeCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEE-EEeCCc-eEEEEEEE----cCee
Q 020637 22 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQII-CRLPPG-HHQYKFYV----DGEW 80 (323)
Q Consensus 22 ~v~F~w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~g~~~~~-~~LppG-~y~YkFiV----DG~w 80 (323)
.+++..| ..-+|++.|.- +.- . +...+.. -.|++| .|.|++.+ ||+-
T Consensus 4 ~itv~vP-adAkl~v~G~~--------t~~-~--G~~R~F~T~~L~~G~~y~Y~v~a~~~~dG~~ 56 (75)
T TIGR03000 4 TITVTLP-ADAKLKVDGKE--------TNG-T--GTVRTFTTPPLEAGKEYEYTVTAEYDRDGRI 56 (75)
T ss_pred EEEEEeC-CCCEEEECCeE--------ccc-C--ccEEEEECCCCCCCCEEEEEEEEEEecCCcE
Confidence 4556666 34567776532 221 1 2344444 579999 59999998 8853
No 304
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=20.37 E-value=73 Score=26.94 Aligned_cols=19 Identities=37% Similarity=0.567 Sum_probs=16.5
Q ss_pred EEEEEeeCCCceEEEEecc
Q 020637 22 PVRFIWPNGGRRVSLSGSF 40 (323)
Q Consensus 22 ~v~F~w~~~~~~V~l~Gsf 40 (323)
||+|++..+..-|+|+|.+
T Consensus 87 pVtf~L~~GsGPVhisG~~ 105 (149)
T PF03066_consen 87 PVTFRLKCGSGPVHISGQH 105 (149)
T ss_dssp SEEEEEEESSS-EEEEEEE
T ss_pred CEEEEEEecCCCEEeeCcc
Confidence 7999999888889999988
No 305
>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.13 E-value=4.4e+02 Score=23.46 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=35.3
Q ss_pred CCeeeEEEEEeeCCC---ceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEEeCCceEEEEEE
Q 020637 17 GSILVPVRFIWPNGG---RRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFY 75 (323)
Q Consensus 17 ~~~~~~v~F~w~~~~---~~V~l~Gsf~~W~~~~~m~~~~~~~g~~~~~~~LppG~y~YkFi 75 (323)
...+..+.|..-.++ -.+.|+|--++=- ....+. +.|.|+.+.+ .+|.|+|.|.
T Consensus 39 ~gd~~~vsF~v~~gg~~~vd~~I~gP~~~~i--~~~~~~--ssgk~tF~a~-~~G~Y~fCF~ 95 (201)
T KOG1692|consen 39 EGDKLSVSFEVIDGGFLGVDVEITGPDGKII--HKGKRE--SSGKYTFTAP-KKGTYTFCFS 95 (201)
T ss_pred cCCEEEEEEEEecCCccceeEEEECCCCchh--hhcccc--cCceEEEEec-CCceEEEEec
Confidence 566888999987643 4677776544321 122232 3688888776 7899999884
Done!