BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020639
(323 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SRQ|A Chain A, Crystal Structure Of The Rap1gap Catalytic Domain
pdb|1SRQ|B Chain B, Crystal Structure Of The Rap1gap Catalytic Domain
pdb|1SRQ|C Chain C, Crystal Structure Of The Rap1gap Catalytic Domain
pdb|1SRQ|D Chain D, Crystal Structure Of The Rap1gap Catalytic Domain
Length = 341
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 204 ISTNAKFEVRSPKRVQIKFEEGIIGTPQVTDSLVIPENVEFLGQKIDLSPFKGILSSVQD 263
IS N KF V K Q EE + T + + + V E +EFLGQK+ L FKG +
Sbjct: 115 ISNNFKFGVIYQKLGQTS-EEELFSTNEESPAFV--EFLEFLGQKVKLQDFKGFRGGLDV 171
Query: 264 TASSVA 269
T
Sbjct: 172 THGQTG 177
>pdb|3E2D|A Chain A, The 1.4 A Crystal Structure Of The Large And Cold-Active
Vibrio Sp. Alkaline Phosphatase
pdb|3E2D|B Chain B, The 1.4 A Crystal Structure Of The Large And Cold-Active
Vibrio Sp. Alkaline Phosphatase
Length = 502
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 37/91 (40%), Gaps = 12/91 (13%)
Query: 102 ALVDSFYGTDRGLNATSETRAEIVEL-----ITQLEAKN-----PTPAPTEALTLLNAKW 151
++ F D+ L T E AEIV IT +AKN P P L+A+
Sbjct: 370 GMISEFQKLDKSLQ-TPEKLAEIVNKNSEFPITAEQAKNVLASKPNPYRLAQHKYLSAEE 428
Query: 152 ILVYTSFSGLFPLLSRGTLPLARVEEISQTI 182
+ F FP RG L LAR + Q I
Sbjct: 429 VPAINDFDAFFPYNDRGNL-LAREQATGQNI 458
>pdb|3BRW|A Chain A, Structure Of The Rap-Rapgap Complex
pdb|3BRW|B Chain B, Structure Of The Rap-Rapgap Complex
pdb|3BRW|C Chain C, Structure Of The Rap-Rapgap Complex
Length = 341
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 204 ISTNAKFEVRSPKRVQIKFEEGIIGTPQVTDSLVIPENVEFLGQKIDLSPFKGILSSVQD 263
IS N KF V +++ EE + T + + + V E +EFLGQK+ L FKG +
Sbjct: 115 ISNNFKFGVIY-QKLGATSEEELFSTNEESPAFV--EFLEFLGQKVKLQDFKGFRGGLDV 171
Query: 264 TASSVA 269
T
Sbjct: 172 THGQTG 177
>pdb|2WR9|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Lectin
(Bcla) Complexed With Aman1-3man Disaccharide
pdb|2WR9|B Chain B, Crystal Structure Of Burkholderia Cenocepacia Lectin
(Bcla) Complexed With Aman1-3man Disaccharide
pdb|2WR9|C Chain C, Crystal Structure Of Burkholderia Cenocepacia Lectin
(Bcla) Complexed With Aman1-3man Disaccharide
pdb|2WR9|D Chain D, Crystal Structure Of Burkholderia Cenocepacia Lectin
(Bcla) Complexed With Aman1-3man Disaccharide
pdb|2WRA|A Chain A, Bcla Lectin From Burkholderia Cenocepacia Complexed With
Aman1(Aman1-6)-3man Trisaccharide
Length = 128
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 14/58 (24%)
Query: 197 GPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQVTDSLVIPENVEFLGQKIDLSPF 254
GP T S N K I+FE + G P TD+ + P N G+K D SPF
Sbjct: 56 GPREATLNSGNGK----------IRFEVSVNGKPSATDARLAPIN----GKKSDGSPF 99
>pdb|2VNV|A Chain A, Crystal Structure Of Bcla Lectin From Burkholderia
Cenocepacia In Complex With Alpha-Methyl-Mannoside At
1.7 Angstrom Resolution
pdb|2VNV|B Chain B, Crystal Structure Of Bcla Lectin From Burkholderia
Cenocepacia In Complex With Alpha-Methyl-Mannoside At
1.7 Angstrom Resolution
pdb|2VNV|C Chain C, Crystal Structure Of Bcla Lectin From Burkholderia
Cenocepacia In Complex With Alpha-Methyl-Mannoside At
1.7 Angstrom Resolution
pdb|2VNV|D Chain D, Crystal Structure Of Bcla Lectin From Burkholderia
Cenocepacia In Complex With Alpha-Methyl-Mannoside At
1.7 Angstrom Resolution
pdb|2VNV|E Chain E, Crystal Structure Of Bcla Lectin From Burkholderia
Cenocepacia In Complex With Alpha-Methyl-Mannoside At
1.7 Angstrom Resolution
pdb|4AOC|A Chain A, Crystal Structure Of Bc2l-A Lectin From Burkolderia
Cenocepacia In Complex With Methyl-Heptoside
pdb|4AOC|B Chain B, Crystal Structure Of Bc2l-A Lectin From Burkolderia
Cenocepacia In Complex With Methyl-Heptoside
pdb|4AOC|C Chain C, Crystal Structure Of Bc2l-A Lectin From Burkolderia
Cenocepacia In Complex With Methyl-Heptoside
pdb|4AOC|D Chain D, Crystal Structure Of Bc2l-A Lectin From Burkolderia
Cenocepacia In Complex With Methyl-Heptoside
pdb|4AOC|E Chain E, Crystal Structure Of Bc2l-A Lectin From Burkolderia
Cenocepacia In Complex With Methyl-Heptoside
Length = 129
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 14/58 (24%)
Query: 197 GPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQVTDSLVIPENVEFLGQKIDLSPF 254
GP T S N K I+FE + G P TD+ + P N G+K D SPF
Sbjct: 57 GPREATLNSGNGK----------IRFEVSVNGKPSATDARLAPIN----GKKSDGSPF 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,628,233
Number of Sequences: 62578
Number of extensions: 262067
Number of successful extensions: 536
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 536
Number of HSP's gapped (non-prelim): 7
length of query: 323
length of database: 14,973,337
effective HSP length: 99
effective length of query: 224
effective length of database: 8,778,115
effective search space: 1966297760
effective search space used: 1966297760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)