Query 020639
Match_columns 323
No_of_seqs 153 out of 419
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 03:59:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020639.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020639hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04755 PAP_fibrillin: PAP_fi 100.0 6.5E-45 1.4E-49 325.9 22.6 197 97-314 1-198 (198)
2 PF14869 DUF4488: Domain of un 71.0 47 0.001 28.8 9.4 74 147-231 3-77 (133)
3 PF08212 Lipocalin_2: Lipocali 40.7 2.2E+02 0.0048 23.9 9.4 32 287-318 81-115 (143)
4 COG3040 Blc Bacterial lipocali 23.5 4.5E+02 0.0098 23.8 7.7 29 289-317 111-142 (174)
5 TIGR02116 toxin_Txe_YoeB toxin 23.4 1E+02 0.0022 23.5 3.2 32 118-151 17-48 (80)
6 PF07624 PSD2: Protein of unkn 21.7 1.5E+02 0.0032 22.7 3.8 40 97-136 21-60 (76)
7 PF05015 Plasmid_killer: Plasm 21.1 3.8E+02 0.0083 21.1 6.3 31 104-134 10-40 (93)
8 PF06251 Caps_synth_GfcC: Caps 21.0 1E+02 0.0022 28.4 3.3 66 93-161 52-130 (229)
9 PLN02845 Branched-chain-amino- 18.6 1.2E+02 0.0026 29.8 3.3 31 287-317 201-231 (336)
10 PF05973 Gp49: Phage derived p 18.2 3.6E+02 0.0077 20.7 5.5 42 117-159 7-50 (91)
No 1
>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle. The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast
Probab=100.00 E-value=6.5e-45 Score=325.91 Aligned_cols=197 Identities=45% Similarity=0.775 Sum_probs=171.8
Q ss_pred HHHHHHHHHHhhcCCCCCcCCHhhHHHHHHHHHHHHHhCCCCCCCccccccCcEEEEEEeccCCcccccccCCCCceeec
Q 020639 97 DNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVE 176 (323)
Q Consensus 97 ~~lK~~LL~aia~t~RG~~as~~~r~~I~elI~qLEalNPtp~P~~s~~lL~G~W~LvYTS~~~~~pll~~g~lP~~~vG 176 (323)
+++|++||+++++++||+.+++++|++|+++|++||++||++.|+++.++|+|+|+|+|||+....+.++.+..+++.++
T Consensus 1 ~~~K~~Ll~~~~~~~rG~~~~~~~~~~i~~~v~~LE~~np~~~p~~s~~~L~G~W~Lvytt~~~~~~~l~~~~~~~~~~~ 80 (198)
T PF04755_consen 1 QDLKQELLQAVAGTNRGLRASPEDREEIEELVEELEALNPTPDPADSLPLLDGRWELVYTTSPEIRSLLQRGRLPGVRVG 80 (198)
T ss_pred ChHHHHHHHHHhccCCCccCCHHHHHHHHHHHHHHHHhCCCCCCcCCchhcCcEEEEEeecCCCcccccccccccccccc
Confidence 36999999999999999999999999999999999999999999987789999999999999998877777777888999
Q ss_pred ceeEEEecCCceEEEEEEecC-CccceEEEEEEEEEEeCCCeEEEEEEeeeecCccccccccccchhhhccccccCCccc
Q 020639 177 EISQTIDSENFTVQNSIRFAG-PLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQVTDSLVIPENVEFLGQKIDLSPFK 255 (323)
Q Consensus 177 ~v~Q~ID~~~~~v~N~V~f~~-Pl~~gsv~v~As~ev~s~~Rv~V~Fe~~~l~~~~~~~~~~~p~~v~~~G~~idl~p~~ 255 (323)
++||+||.+++++.|+|+|.. |+..+.+.+.+++++.+++|+.++|+++.+.++.+ ++
T Consensus 81 ~v~Q~id~~~~~~~N~v~~~~~~~~~~~~~v~a~~~~~~~~rv~v~f~~~~l~~~~~---------------------l~ 139 (198)
T PF04755_consen 81 RVFQTIDADNGRVENVVELSGFPLLEGSVSVRASLEVRSPRRVEVTFERASLKPPSL---------------------LK 139 (198)
T ss_pred ceEEEEECCCceEEEEEEEeccCceEEEEEEEEEEEEccccEEEEEEEeeEEcccce---------------------ee
Confidence 999999999999999999876 76778999999999999999999999999987653 22
Q ss_pred ccccchhhhhhhhhhhccCCCCcccccCCCCCceEEEEEEecCCeEEEecCCCcEEEEE
Q 020639 256 GILSSVQDTASSVAKTISSQPPLKFSISNSNAQSWLLTTYLDEDLRISRADAGSVFVFI 314 (323)
Q Consensus 256 ~~l~~~~~~~~~i~~~~s~~pPlk~Pl~~~~~~gwldtTYLDedLRIsRG~~G~vFVl~ 314 (323)
+++.++......+.+.+....|+++++++..++|||+||||||||||+||++|++|||.
T Consensus 140 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~l~~tYLDedlRI~Rg~~G~~fVl~ 198 (198)
T PF04755_consen 140 GVLGPLKDALNNVPRGISDELPVPLPLPGGSPKGWLDTTYLDEDLRISRGNKGSLFVLK 198 (198)
T ss_pred ccchhhhhhhhhcccccccccccccccCCCCCceEEEEEEECCCeEEEEcCCCCEEEeC
Confidence 22333444444455555566788888887789999999999999999999999999984
No 2
>PF14869 DUF4488: Domain of unknown function (DUF4488)
Probab=71.04 E-value=47 Score=28.76 Aligned_cols=74 Identities=20% Similarity=0.252 Sum_probs=47.7
Q ss_pred cCcEEEEE-EeccCCcccccccCCCCceeecceeEEEecCCceEEEEEEecCCccceEEEEEEEEEEeCCCeEEEEEEee
Q 020639 147 LNAKWILV-YTSFSGLFPLLSRGTLPLARVEEISQTIDSENFTVQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEG 225 (323)
Q Consensus 147 L~G~W~Lv-YTS~~~~~pll~~g~lP~~~vG~v~Q~ID~~~~~v~N~V~f~~Pl~~gsv~v~As~ev~s~~Rv~V~Fe~~ 225 (323)
|.|-|+|. |-+...-.+ |. ++.+.++.+|. +.+++.|..-+. -....+...+.|+..++....-..++
T Consensus 3 l~GVWQ~c~~~~~~~~~~----g~---l~~~~~lKilS-~Dgtf~Ni~~~~--~~~aiIt~~GtY~~~sD~~Y~E~IeK- 71 (133)
T PF14869_consen 3 LQGVWQLCHYVSESPEVP----GK---LKPSNVLKILS-DDGTFVNITMIP--KSGAIITGYGTYEQPSDNIYVESIEK- 71 (133)
T ss_pred ceEEEEEEEEeecCcccC----ce---EeecccEEEEc-CCCcEEEEEEeC--CCCcEEEEeEEEEEcCCccceeeecc-
Confidence 88999999 555543222 11 23446667775 568999998863 33445677889999888766555555
Q ss_pred eecCcc
Q 020639 226 IIGTPQ 231 (323)
Q Consensus 226 ~l~~~~ 231 (323)
.+.+|+
T Consensus 72 nv~lp~ 77 (133)
T PF14869_consen 72 NVHLPF 77 (133)
T ss_pred eecCcc
Confidence 444443
No 3
>PF08212 Lipocalin_2: Lipocalin-like domain; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 3EBW_B 1QWD_A 2ACO_A 3MBT_A.
Probab=40.67 E-value=2.2e+02 Score=23.92 Aligned_cols=32 Identities=13% Similarity=0.222 Sum_probs=25.3
Q ss_pred CceEEEEEEecCC---eEEEecCCCcEEEEEecCC
Q 020639 287 AQSWLLTTYLDED---LRISRADAGSVFVFIKEGS 318 (323)
Q Consensus 287 ~~gwldtTYLDed---LRIsRG~~G~vFVl~R~~s 318 (323)
..+=..+.|+|.| .=|+-.++-.+|||.|+-.
T Consensus 81 ~~~~YwVl~~D~dY~~~iv~~~~~~~~WILsR~p~ 115 (143)
T PF08212_consen 81 PKGNYWVLYTDYDYSWAIVGSPDREYLWILSRTPQ 115 (143)
T ss_dssp EEEEEEEEEEBTTSSEEEEEECCCCEEEEEESSSS
T ss_pred CCcceEEEEEcCCccEEEEecCCCCEEEEEeCCCC
Confidence 4466679999998 5566778899999999854
No 4
>COG3040 Blc Bacterial lipocalin [Cell envelope biogenesis, outer membrane]
Probab=23.45 E-value=4.5e+02 Score=23.83 Aligned_cols=29 Identities=10% Similarity=0.127 Sum_probs=23.2
Q ss_pred eEEEEEEecCCeEEE---ecCCCcEEEEEecC
Q 020639 289 SWLLTTYLDEDLRIS---RADAGSVFVFIKEG 317 (323)
Q Consensus 289 gwldtTYLDedLRIs---RG~~G~vFVl~R~~ 317 (323)
|-+.++|+|+|-+.. =.|+-.+|+|.|.-
T Consensus 111 g~Y~Vl~~d~eYs~aiVgsPdr~ylWlLsRtP 142 (174)
T COG3040 111 GDYWVLALDPEYSWAIVGSPDREYLWLLSRTP 142 (174)
T ss_pred ccEEEEEECCCccEEEEeCCCcceEEEEecCC
Confidence 556799999998754 45788999999974
No 5
>TIGR02116 toxin_Txe_YoeB toxin-antitoxin system, toxin component, Txe/YoeB family. The Axe-Txe pair in Enterococcus faecium and the homologous YefM-YoeB pair in Escherichia coli have been shown to act as an antitoxin-toxin pair. This model describes the toxin component. Nearly every example found is next to an identifiable antitoxin, as indicated by matches to TIGR01552 and/or pfam02604.
Probab=23.38 E-value=1e+02 Score=23.53 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=19.4
Q ss_pred HhhHHHHHHHHHHHHHhCCCCCCCccccccCcEE
Q 020639 118 SETRAEIVELITQLEAKNPTPAPTEALTLLNAKW 151 (323)
Q Consensus 118 ~~~r~~I~elI~qLEalNPtp~P~~s~~lL~G~W 151 (323)
++.+..|.+.|++|+ .||.+..... ..|.|.|
T Consensus 17 ~~~~~~i~~~i~~l~-~~P~~~~~~~-~~L~G~~ 48 (80)
T TIGR02116 17 KKLKKKINELIKDVR-RDPFKGKGKP-EPLKGDL 48 (80)
T ss_pred HHHHHHHHHHHHHHH-cCCCCCCCCc-ccCCCCC
Confidence 456788999999887 4665422221 3455544
No 6
>PF07624 PSD2: Protein of unknown function (DUF1585); InterPro: IPR011478 This entry represents a conserved region at the C terminus of a family of cytochrome-like proteins found in bacteria such as Rhodopirellula baltica and Solibacter usitatus. These proteins also contain IPR013036 from INTERPRO, IPR013039 from INTERPRO, IPR013042 from INTERPRO and IPR013043 from INTERPRO.
Probab=21.66 E-value=1.5e+02 Score=22.66 Aligned_cols=40 Identities=15% Similarity=0.258 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhcCCCCCcCCHhhHHHHHHHHHHHHHhCC
Q 020639 97 DNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNP 136 (323)
Q Consensus 97 ~~lK~~LL~aia~t~RG~~as~~~r~~I~elI~qLEalNP 136 (323)
+...+++.+.+....-|...+..|+..|+++++++++.+-
T Consensus 21 ~~~~~~~~~kl~~YAlGR~~~~~D~~~i~~i~~~~~~~~y 60 (76)
T PF07624_consen 21 DQFARCFAEKLLTYALGRPLEFSDRCEIDRIVEAFKANGY 60 (76)
T ss_pred HHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHcCC
Confidence 3444444444444334444557799999999999998653
No 7
>PF05015 Plasmid_killer: Plasmid maintenance system killer protein; InterPro: IPR007711 Several plasmids with proteic killer gene systems have been reported. All of them encode a stable toxin and an unstable antidote. Upon loss of the plasmid, the less stable inhibitor is inactivated more rapidly than the toxin, allowing the toxin to be activated. The activation of those systems result in cell filamentation and cessation of viable cell production. It has been verified that both the stable killer and the unstable inhibitor of the systems are short polypeptides. This family corresponds to the toxin.
Probab=21.09 E-value=3.8e+02 Score=21.11 Aligned_cols=31 Identities=10% Similarity=0.294 Sum_probs=17.7
Q ss_pred HHHhhcCCCCCcCCHhhHHHHHHHHHHHHHh
Q 020639 104 VDSFYGTDRGLNATSETRAEIVELITQLEAK 134 (323)
Q Consensus 104 L~aia~t~RG~~as~~~r~~I~elI~qLEal 134 (323)
|+.+..++.-....++-...+...+++|++.
T Consensus 10 l~~l~~~~~~k~~~~~~~~~~~~~L~~L~aa 40 (93)
T PF05015_consen 10 LEKLFEDGKTKKIPADIAKKLRRRLDQLDAA 40 (93)
T ss_pred HHHHHCCCCcCCcCHHHHHHHHHHHHHHHhC
Confidence 4444444443334555666677777777764
No 8
>PF06251 Caps_synth_GfcC: Capsule biosynthesis GfcC; InterPro: IPR010425 This entry represents uncharacterised bacterial proteins that contain a central beta-grasp like domain related to the SLBB domain [].; PDB: 3P42_B.
Probab=20.99 E-value=1e+02 Score=28.40 Aligned_cols=66 Identities=23% Similarity=0.233 Sum_probs=39.1
Q ss_pred hhhHHHHHHHHHHHhhcCCCCCcCCHhhHHHHHHHHHHHHHhCCCCC-------------CCccccccCcEEEEEEeccC
Q 020639 93 VTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPA-------------PTEALTLLNAKWILVYTSFS 159 (323)
Q Consensus 93 ~~~~~~lK~~LL~aia~t~RG~~as~~~r~~I~elI~qLEalNPtp~-------------P~~s~~lL~G~W~LvYTS~~ 159 (323)
....++.|++|+..++.... ....+..+.+..++++|+....+.+ +..+ .+|.|.+.|.....+
T Consensus 52 ~~~~~~~~~~ll~~L~~l~~--~~~~~~~~~~~~l~~qL~~~~~~gR~~i~lD~d~~r~~~~~n-~~L~ggd~L~vP~rp 128 (229)
T PF06251_consen 52 QAEAEQQKQQLLAQLAQLEQ--SADSDQAAAAQQLIQQLQSLEATGRVVINLDPDWVRLNPEYN-PLLEGGDRLYVPPRP 128 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HS-HHHHHHHHHHHHHHTT--B----S----TTS-EESTTSS--B-ECEEEEE-----
T ss_pred hHHHHHHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHHHhccccceEEEecCHHHhhccccCC-CcCCCCcEEEECCCC
Confidence 46678888888887765433 4566778899999999988755422 1122 678999999999887
Q ss_pred Cc
Q 020639 160 GL 161 (323)
Q Consensus 160 ~~ 161 (323)
..
T Consensus 129 ~~ 130 (229)
T PF06251_consen 129 NT 130 (229)
T ss_dssp SE
T ss_pred CE
Confidence 63
No 9
>PLN02845 Branched-chain-amino-acid aminotransferase-like protein
Probab=18.58 E-value=1.2e+02 Score=29.75 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=27.0
Q ss_pred CceEEEEEEecCCeEEEecCCCcEEEEEecC
Q 020639 287 AQSWLLTTYLDEDLRISRADAGSVFVFIKEG 317 (323)
Q Consensus 287 ~~gwldtTYLDedLRIsRG~~G~vFVl~R~~ 317 (323)
..|+.|..+||++=+|+-|..+|+|++.|.+
T Consensus 201 ~~G~deaLlln~~G~V~Egt~sNiF~v~~~~ 231 (336)
T PLN02845 201 ERGAFAGIWLDEEGFVAEGPNMNVAFLTNDG 231 (336)
T ss_pred HcCCCEEEEECCCCcEEEcCcceEEEEEECC
Confidence 4588999999999999999999998876654
No 10
>PF05973 Gp49: Phage derived protein Gp49-like (DUF891); InterPro: IPR009241 This entry consists of several hypothetical viral and bacterial proteins some are annotated as addiction module killer proteins.
Probab=18.24 E-value=3.6e+02 Score=20.71 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=29.9
Q ss_pred CHhhHHHHHHHHHHHHHhCCCCCCCcccccc--CcEEEEEEeccC
Q 020639 117 TSETRAEIVELITQLEAKNPTPAPTEALTLL--NAKWILVYTSFS 159 (323)
Q Consensus 117 s~~~r~~I~elI~qLEalNPtp~P~~s~~lL--~G~W~LvYTS~~ 159 (323)
+...+++|...++.|+..+|...+... ..| +|-|+|......
T Consensus 7 ~~~~~~~i~~~l~~l~~~G~~l~~~~~-k~l~~~~i~ElR~~~~~ 50 (91)
T PF05973_consen 7 PDKERAKILAQLERLEEHGPSLGEPLF-KHLKGDGIYELRVRGGS 50 (91)
T ss_pred CHHHHHHHHHHHHHHHhcCCccCCCcc-cccCcCCeEEEEEeecC
Confidence 566789999999999888754333222 334 699999887765
Done!