Query 020639
Match_columns 323
No_of_seqs 153 out of 419
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 06:00:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020639.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020639hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4i95_A Putative uncharacterize 79.9 21 0.00072 29.9 10.7 77 145-232 10-87 (142)
2 4gzv_A Hypothetical protein; A 73.8 30 0.001 29.0 10.1 70 145-225 10-81 (142)
3 2a6s_A Toxin YOEB; YEFM, antit 19.3 1.5E+02 0.0053 20.8 4.6 20 118-138 21-40 (84)
4 1ug7_A 2610208M17RIK protein; 18.1 52 0.0018 27.1 1.8 55 63-133 25-79 (128)
5 3oei_C RELK (toxin RV3358); to 16.6 1.7E+02 0.0059 22.4 4.5 19 118-137 33-51 (96)
6 1z8m_A Conserved hypothetical 14.9 1E+02 0.0034 22.1 2.6 16 122-137 25-40 (88)
7 3pjy_A Hypothetical signal pep 12.5 1E+02 0.0035 25.2 2.3 14 291-304 70-83 (136)
8 3m7a_A Uncharacterized protein 12.2 1.1E+02 0.0037 25.3 2.3 14 291-304 84-97 (140)
9 2kvu_A MKL/myocardin-like prot 11.6 4.1E+02 0.014 19.7 5.1 41 92-138 27-67 (75)
10 3bpq_B Toxin RELE3; protein to 10.9 4.1E+02 0.014 18.2 5.4 21 118-138 18-38 (88)
No 1
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=79.90 E-value=21 Score=29.89 Aligned_cols=77 Identities=14% Similarity=0.179 Sum_probs=52.2
Q ss_pred cccCcEEEEEEeccCCcccccccCCCC-ceeecceeEEEecCCceEEEEEEecCCccceEEEEEEEEEEeCCCeEEEEEE
Q 020639 145 TLLNAKWILVYTSFSGLFPLLSRGTLP-LARVEEISQTIDSENFTVQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFE 223 (323)
Q Consensus 145 ~lL~G~W~LvYTS~~~~~pll~~g~lP-~~~vG~v~Q~ID~~~~~v~N~V~f~~Pl~~gsv~v~As~ev~s~~Rv~V~Fe 223 (323)
..|.|-|+|.+-.+.... .| .++.+..+.+|. +.+++.|.+-..+ ...-+...+.|+..++....-..+
T Consensus 10 ~~L~GvWQ~C~y~s~~pd-------~~g~L~psn~lKIlS-dDgtF~Ni~m~~~--~~aiIt~~GtY~~~SD~~Y~E~Ie 79 (142)
T 4i95_A 10 AHLQGIWQLCHYVSENPD-------IPGVLKPSNTFKVLS-DDGRIVNFTIRPG--TDAIITGYGTYRQISAAAYKESIE 79 (142)
T ss_dssp CSCCEEEEEEEEECSSTT-------SCCEEEEEEEEEEEC-TTSEEEEEECCTT--SCCEEEEEEEEEEEETTEEEEEEE
T ss_pred ccceeEeEEEEEecCCCC-------CceEeccCccEEEEc-CCCcEEEEEEecC--CCcEEEEeEEEEecCCcceeeeec
Confidence 459999999876554321 12 245667777785 5689999987732 234467788999999987766666
Q ss_pred eeeecCccc
Q 020639 224 EGIIGTPQV 232 (323)
Q Consensus 224 ~~~l~~~~~ 232 (323)
+. +.+|++
T Consensus 80 Kn-i~lp~l 87 (142)
T 4i95_A 80 KN-IHLPML 87 (142)
T ss_dssp EE-SSSGGG
T ss_pred cc-ccCccc
Confidence 64 555543
No 2
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=73.76 E-value=30 Score=29.03 Aligned_cols=70 Identities=16% Similarity=0.163 Sum_probs=46.8
Q ss_pred cccCcEEEEEE-eccCCcccccccCCCCc-eeecceeEEEecCCceEEEEEEecCCccceEEEEEEEEEEeCCCeEEEEE
Q 020639 145 TLLNAKWILVY-TSFSGLFPLLSRGTLPL-ARVEEISQTIDSENFTVQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKF 222 (323)
Q Consensus 145 ~lL~G~W~LvY-TS~~~~~pll~~g~lP~-~~vG~v~Q~ID~~~~~v~N~V~f~~Pl~~gsv~v~As~ev~s~~Rv~V~F 222 (323)
.-|.|-|+|++ .+...-. |+ +..+..+-+|. +.|++.|.+-... ....+...+.|+..++....-..
T Consensus 10 ~~L~GvWQ~c~y~~~~~~~--------~~~l~~s~~~KIlS-~DgtF~N~~m~~~--~~aiIt~yGtY~l~SD~~Y~E~i 78 (142)
T 4gzv_A 10 ADLKGIWQLCHYVSESPDV--------PGALKPSNTFKVLS-DDGRIVNFTIIPG--ADAIITGYGTYKQLTDDSYKESI 78 (142)
T ss_dssp CCCCEEEEEEEEEESSTTS--------CCEEEEEEEEEEEC-TTSEEEEEECCTT--SCCEEEEEEEEEEEETTEEEEEE
T ss_pred ccceEEeEEeeEeecCCCC--------CceEeecCceEEEC-CCCcEEEEEEeCC--CCcEEEEeEEEEecCCCeeeeee
Confidence 45999999884 4443221 22 34556777886 4689999986542 23446778899999998776555
Q ss_pred Eee
Q 020639 223 EEG 225 (323)
Q Consensus 223 e~~ 225 (323)
++.
T Consensus 79 ~kn 81 (142)
T 4gzv_A 79 EKN 81 (142)
T ss_dssp EEE
T ss_pred ccc
Confidence 553
No 3
>2a6s_A Toxin YOEB; YEFM, antitoxin, addiction modules, RNAse, inhibitor; 1.77A {Escherichia coli} SCOP: d.298.1.1 PDB: 2a6r_A 2a6q_E
Probab=19.28 E-value=1.5e+02 Score=20.81 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=13.9
Q ss_pred HhhHHHHHHHHHHHHHhCCCC
Q 020639 118 SETRAEIVELITQLEAKNPTP 138 (323)
Q Consensus 118 ~~~r~~I~elI~qLEalNPtp 138 (323)
....+.|.++|+.|.. ||-+
T Consensus 21 ~~~~~~i~~~i~~l~~-~P~~ 40 (84)
T 2a6s_A 21 KRIVKKINELIKDTRR-TPFE 40 (84)
T ss_dssp HHHHHHHHHHHHHHHH-STTS
T ss_pred HHHHHHHHHHHHHHHh-CCCC
Confidence 3446788888888865 6654
No 4
>1ug7_A 2610208M17RIK protein; hypothetical protein FLJ12806, four helical UP-and-DOWN bundle, structural genomics; NMR {Mus musculus} SCOP: a.24.24.1
Probab=18.09 E-value=52 Score=27.12 Aligned_cols=55 Identities=29% Similarity=0.352 Sum_probs=39.9
Q ss_pred EeecCCCCCCCcccccCCcccccccCCCcchhhHHHHHHHHHHHhhcCCCCCcCCHhhHHHHHHHHHHHHH
Q 020639 63 RAADDDEWGPEKEKEEGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEA 133 (323)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lK~~LL~aia~t~RG~~as~~~r~~I~elI~qLEa 133 (323)
+|+|=|.||.-.++ .++-..|-.+|-..+.++++-...++++++-|..++.-|+-
T Consensus 25 Ka~dfDsWGQvvEA----------------~deY~~La~~lkk~~~s~~~~~~fte~qkk~i~KiatcL~l 79 (128)
T 1ug7_A 25 RGADFDSWGQLVEA----------------IDEYQILARHLQKEAQAQHNNSEFTEEQKKTIGKIATCLEL 79 (128)
T ss_dssp HHHHHHHHTCHHHH----------------HHHHHHHHHHHHHHHTCSSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHH----------------HHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHH
Confidence 46777889866543 34556677777777788877666778888888888888776
No 5
>3oei_C RELK (toxin RV3358); toxin-antitoxin systems, protein-protein complex, tuberculos structural genomics consortium, protein binding; HET: MLZ FLC; 2.15A {Mycobacterium tuberculosis} SCOP: d.298.1.0
Probab=16.60 E-value=1.7e+02 Score=22.42 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=14.5
Q ss_pred HhhHHHHHHHHHHHHHhCCC
Q 020639 118 SETRAEIVELITQLEAKNPT 137 (323)
Q Consensus 118 ~~~r~~I~elI~qLEalNPt 137 (323)
...+..|.++|++|+ .||-
T Consensus 33 k~~~krI~~~I~~l~-~nP~ 51 (96)
T 3oei_C 33 RKTARRITRLIGEIQ-RDPF 51 (96)
T ss_dssp HHHHHHHHHHHHHHH-HCTT
T ss_pred HHHHHHHHHHHHHHH-hCCC
Confidence 456788999999887 4775
No 6
>1z8m_A Conserved hypothetical protein HP0894; structural genomics, helicobac pylori, unknown function; NMR {Helicobacter pylori} SCOP: d.298.1.2
Probab=14.94 E-value=1e+02 Score=22.09 Aligned_cols=16 Identities=31% Similarity=0.465 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhCCC
Q 020639 122 AEIVELITQLEAKNPT 137 (323)
Q Consensus 122 ~~I~elI~qLEalNPt 137 (323)
..+.++++.|...||-
T Consensus 25 ~~~~~~i~~l~~~~p~ 40 (88)
T 1z8m_A 25 SVLNEVILTLRKKEPL 40 (88)
T ss_dssp HHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHhcCCCC
Confidence 4688888888644664
No 7
>3pjy_A Hypothetical signal peptide protein; DUF192 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.55A {Sinorhizobium meliloti}
Probab=12.55 E-value=1e+02 Score=25.23 Aligned_cols=14 Identities=21% Similarity=0.230 Sum_probs=12.0
Q ss_pred EEEEEecCCeEEEe
Q 020639 291 LLTTYLDEDLRISR 304 (323)
Q Consensus 291 ldtTYLDedLRIsR 304 (323)
||+.|||+|-||..
T Consensus 70 LDiiFld~~g~Vv~ 83 (136)
T 3pjy_A 70 LDMLFIASDGTIRT 83 (136)
T ss_dssp EEEEEECTTSBEEE
T ss_pred eEEEEECCCCEEEE
Confidence 59999999988864
No 8
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=12.20 E-value=1.1e+02 Score=25.34 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=12.0
Q ss_pred EEEEEecCCeEEEe
Q 020639 291 LLTTYLDEDLRISR 304 (323)
Q Consensus 291 ldtTYLDedLRIsR 304 (323)
||+.|||+|-||..
T Consensus 84 LDiiFid~dg~Vv~ 97 (140)
T 3m7a_A 84 LDIIFVGLDRRVMN 97 (140)
T ss_dssp EEEEEECTTSBEEE
T ss_pred eEEEEECCCCeEEE
Confidence 59999999988874
No 9
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=11.61 E-value=4.1e+02 Score=19.72 Aligned_cols=41 Identities=22% Similarity=0.296 Sum_probs=27.1
Q ss_pred chhhHHHHHHHHHHHhhcCCCCCcCCHhhHHHHHHHHHHHHHhCCCC
Q 020639 92 EVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTP 138 (323)
Q Consensus 92 ~~~~~~~lK~~LL~aia~t~RG~~as~~~r~~I~elI~qLEalNPtp 138 (323)
+.-.+.+||.+|-. ||+..+-...+-|+.|.+.++..++.+
T Consensus 27 ~klkVaeLK~eLk~------RGL~~sG~KaeLIeRL~~~~~~~~~~~ 67 (75)
T 2kvu_A 27 DDMKVAELKQELKL------RSLPVSGTKTELIERLRAYQDQISPVP 67 (75)
T ss_dssp TTSCHHHHHHHHHH------TTCCCCSCHHHHHHHHHHHHHTTSCCS
T ss_pred HHCcHHHHHHHHHH------cCCCCCCCHHHHHHHHHHHHHccCCCC
Confidence 45678888887765 677765555666666666666655443
No 10
>3bpq_B Toxin RELE3; protein toxin-antitoxin complex; 2.20A {Methanocaldococcus jannaschii}
Probab=10.94 E-value=4.1e+02 Score=18.20 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=13.6
Q ss_pred HhhHHHHHHHHHHHHHhCCCC
Q 020639 118 SETRAEIVELITQLEAKNPTP 138 (323)
Q Consensus 118 ~~~r~~I~elI~qLEalNPtp 138 (323)
+..+..+.++++.++.+...|
T Consensus 18 ~~~~~~i~~~i~~~~~l~~~P 38 (88)
T 3bpq_B 18 GHIRKRIKLIIEECQNSNSLN 38 (88)
T ss_dssp HHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHhcccCc
Confidence 445667888888887653333
Done!