Query 020639
Match_columns 323
No_of_seqs 153 out of 419
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 06:00:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020639.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020639hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mu2a2 e.8.1.2 (A:3-429) HIV- 17.8 55 0.004 29.6 4.6 42 114-156 22-74 (427)
2 d2ov9a1 d.38.1.5 (A:7-209) Hyp 13.2 2.1E+02 0.015 22.6 6.7 45 93-137 21-65 (203)
3 d2gyc31 a.108.1.1 (3:2-48) Rib 12.1 96 0.007 19.5 3.2 29 100-137 3-31 (47)
4 d1i2ka_ e.17.1.1 (A:) Aminodeo 9.1 93 0.0068 25.0 3.0 28 287-314 156-183 (269)
5 d1qpza1 a.35.1.5 (A:2-58) Puri 9.0 1E+02 0.0076 19.8 2.7 18 115-132 26-43 (57)
6 d1wzaa1 b.71.1.1 (A:437-515) B 8.9 68 0.0049 21.6 1.6 20 139-159 33-52 (79)
7 d2bmoa1 b.33.1.2 (A:3-152) Nit 8.6 1.4E+02 0.01 22.6 3.8 28 287-314 47-74 (150)
8 d1c0aa1 b.40.4.1 (A:1-106) Asp 8.6 1.3E+02 0.0093 21.4 3.3 23 288-319 21-43 (106)
9 d1hyua3 c.47.1.2 (A:1-102) Alk 8.2 2.3E+02 0.017 20.1 4.6 41 97-137 4-49 (102)
10 d1wmia1 d.298.1.2 (A:1-88) Hyp 8.1 79 0.0058 21.4 1.9 23 117-140 19-41 (88)
No 1
>d1mu2a2 e.8.1.2 (A:3-429) HIV-1 reverse transcriptase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=17.75 E-value=55 Score=29.64 Aligned_cols=42 Identities=19% Similarity=0.409 Sum_probs=27.4
Q ss_pred CcCCHhhHHHHHHHHHHHHHhC-----CCCCCCcccccc------CcEEEEEEe
Q 020639 114 LNATSETRAEIVELITQLEAKN-----PTPAPTEALTLL------NAKWILVYT 156 (323)
Q Consensus 114 ~~as~~~r~~I~elI~qLEalN-----Ptp~P~~s~~lL------~G~W~LvYT 156 (323)
...++++++++.+.|++|+..+ |...|-.+ +.+ .|+||++--
T Consensus 22 ~pl~~ek~~al~~~i~ell~~G~I~~~ps~Sp~~s-Pvf~V~KKd~gk~Rl~vD 74 (427)
T d1mu2a2 22 WPLTKEKIEALKEICEKMEKEGQLEEAPPTNPYNT-PTFAIKKKDKNKWRMLID 74 (427)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTSEEECCTTCCCBB-CEEECCCCC----CEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHHCCeEEeCCCCCcCcC-ceEEEEcCCCCCcEEEEc
Confidence 4468999999999999999975 33445444 322 499999854
No 2
>d2ov9a1 d.38.1.5 (A:7-209) Hypothetical protein RHA1_ro05818 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=13.21 E-value=2.1e+02 Score=22.58 Aligned_cols=45 Identities=24% Similarity=0.400 Sum_probs=36.5
Q ss_pred hhhHHHHHHHHHHHhhcCCCCCcCCHhhHHHHHHHHHHHHHhCCC
Q 020639 93 VTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPT 137 (323)
Q Consensus 93 ~~~~~~lK~~LL~aia~t~RG~~as~~~r~~I~elI~qLEalNPt 137 (323)
.....+.-++|.+++..++-+-..-.+..+.|++++++|+...+.
T Consensus 21 ~~r~~~a~R~l~d~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 65 (203)
T d2ov9a1 21 VDRATDAARRVVDALLRTDRGNANLERVAEELNSIAGHLEEHAPA 65 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhhccccC
Confidence 455566777999999999888777778889999999999987654
No 3
>d2gyc31 a.108.1.1 (3:2-48) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Escherichia coli [TaxId: 562]}
Probab=12.10 E-value=96 Score=19.47 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=22.0
Q ss_pred HHHHHHHhhcCCCCCcCCHhhHHHHHHHHHHHHHhCCC
Q 020639 100 KKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPT 137 (323)
Q Consensus 100 K~~LL~aia~t~RG~~as~~~r~~I~elI~qLEalNPt 137 (323)
|.++|++++.. .--+|.+||..+|..-..
T Consensus 3 ke~Ileaia~M---------SVmdvveLi~amEEKFGV 31 (47)
T d2gyc31 3 KDQIIEAVAAM---------SVMDVVELISAMEEKFGV 31 (47)
T ss_dssp HHHHHHHHHHS---------CHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHh---------hHHHHHHHHHHHHHHhCc
Confidence 78899999863 134788999999987544
No 4
>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia coli [TaxId: 562]}
Probab=9.06 E-value=93 Score=25.03 Aligned_cols=28 Identities=14% Similarity=0.016 Sum_probs=24.7
Q ss_pred CceEEEEEEecCCeEEEecCCCcEEEEE
Q 020639 287 AQSWLLTTYLDEDLRISRADAGSVFVFI 314 (323)
Q Consensus 287 ~~gwldtTYLDedLRIsRG~~G~vFVl~ 314 (323)
..|.-|..++|++=+|+-|..+|+|+..
T Consensus 156 ~~g~dd~llld~~g~v~E~s~sNif~vk 183 (269)
T d1i2ka_ 156 QTNADEALVLDSEGWVTECCAANLFWRK 183 (269)
T ss_dssp TSSCSEEEEEBTTSBEEECSSSEEEEEE
T ss_pred cccccceeeecccchhhhccccceEEEe
Confidence 4588899999999999999999999753
No 5
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=8.98 E-value=1e+02 Score=19.77 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.8
Q ss_pred cCCHhhHHHHHHHHHHHH
Q 020639 115 NATSETRAEIVELITQLE 132 (323)
Q Consensus 115 ~as~~~r~~I~elI~qLE 132 (323)
..+++.|++|.+++++|-
T Consensus 26 ~vs~~tr~rV~~~a~~lg 43 (57)
T d1qpza1 26 FVAEETRNAVWAAIKELH 43 (57)
T ss_dssp CCCHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHC
Confidence 478999999999999884
No 6
>d1wzaa1 b.71.1.1 (A:437-515) Bacterial alpha-Amylase {Halothermothrix orenii [TaxId: 31909]}
Probab=8.86 E-value=68 Score=21.57 Aligned_cols=20 Identities=20% Similarity=0.607 Sum_probs=15.2
Q ss_pred CCCccccccCcEEEEEEeccC
Q 020639 139 APTEALTLLNAKWILVYTSFS 159 (323)
Q Consensus 139 ~P~~s~~lL~G~W~LvYTS~~ 159 (323)
+|.+ ....+|.|.|+|.|..
T Consensus 33 rpvk-ikvasgnwtllfnsgd 52 (79)
T d1wzaa1 33 RPVK-IKVASGNWTLLFNSGD 52 (79)
T ss_dssp SCEE-EEEESSCEEEEEESSS
T ss_pred CcEE-EEEecCcEEEEEccCC
Confidence 4554 3567899999999875
No 7
>d2bmoa1 b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha subunit, NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]}
Probab=8.63 E-value=1.4e+02 Score=22.55 Aligned_cols=28 Identities=21% Similarity=0.385 Sum_probs=24.2
Q ss_pred CceEEEEEEecCCeEEEecCCCcEEEEE
Q 020639 287 AQSWLLTTYLDEDLRISRADAGSVFVFI 314 (323)
Q Consensus 287 ~~gwldtTYLDedLRIsRG~~G~vFVl~ 314 (323)
+.-++-++++++.+-|.|+.+|.+.+|.
T Consensus 47 ~Gd~~~~~i~~~~~vv~R~~dg~i~af~ 74 (150)
T d2bmoa1 47 PGDYVKAKMGVDEVIVSRQNDGSVRAFL 74 (150)
T ss_dssp TTEEEEEEETTEEEEEEECTTSCEEEEE
T ss_pred CcceeeeeecCceeEEEecCCCchhhhh
Confidence 4567788899999999999999998875
No 8
>d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]}
Probab=8.59 E-value=1.3e+02 Score=21.38 Aligned_cols=23 Identities=13% Similarity=0.349 Sum_probs=17.8
Q ss_pred ceEEEEEEecCCeEEEecCCCcEEEEEecCCC
Q 020639 288 QSWLLTTYLDEDLRISRADAGSVFVFIKEGSP 319 (323)
Q Consensus 288 ~gwldtTYLDedLRIsRG~~G~vFVl~R~~s~ 319 (323)
.||+.. .|+.++-.||..|+++-
T Consensus 21 ~GWv~~---------~R~~g~i~Fi~LRD~~G 43 (106)
T d1c0aa1 21 CGWVNR---------RRDLGSLIFIDMRDREG 43 (106)
T ss_dssp EEEEEE---------EEECSSCEEEEEEETTE
T ss_pred EEEEEE---------eeeCCCcEEEEEEcCCe
Confidence 499843 47788899999998763
No 9
>d1hyua3 c.47.1.2 (A:1-102) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=8.21 E-value=2.3e+02 Score=20.05 Aligned_cols=41 Identities=22% Similarity=0.278 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhcCCCCCc-----CCHhhHHHHHHHHHHHHHhCCC
Q 020639 97 DNLKKALVDSFYGTDRGLN-----ATSETRAEIVELITQLEAKNPT 137 (323)
Q Consensus 97 ~~lK~~LL~aia~t~RG~~-----as~~~r~~I~elI~qLEalNPt 137 (323)
+++|++|-..++...+-+. -..+...++.++++++.++++.
T Consensus 4 ~~ik~QLk~~f~~l~~~V~l~~~~~~~~~s~el~~~l~eva~lSdk 49 (102)
T d1hyua3 4 TNMKTQLRAYLEKLTKPVELIATLDDSAKSAEIKELLAEIAELSDK 49 (102)
T ss_dssp HHHHHHHHHHHTTCCSCEEEEEECCSSHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEeCCChhHHHHHHHHHHHHhhCCC
Confidence 5788999988888777644 2446677899999999988643
No 10
>d1wmia1 d.298.1.2 (A:1-88) Hypothetical protein PHS013 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=8.11 E-value=79 Score=21.44 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=15.9
Q ss_pred CHhhHHHHHHHHHHHHHhCCCCCC
Q 020639 117 TSETRAEIVELITQLEAKNPTPAP 140 (323)
Q Consensus 117 s~~~r~~I~elI~qLEalNPtp~P 140 (323)
.+..+..|.+.++.|+. ||.+.|
T Consensus 19 ~~~~~~~I~~~l~~L~~-~P~~~~ 41 (88)
T d1wmia1 19 PKAHYRRFLEFRDILEY-EPVPRE 41 (88)
T ss_dssp CHHHHHHHHHHHHHHTT-CSCCHH
T ss_pred CHHHHHHHHHHHHHHHh-CcCcCC
Confidence 45677888888888764 665443
Done!