BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020640
(323 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/138 (19%), Positives = 61/138 (44%), Gaps = 16/138 (11%)
Query: 64 FRALFGESH----------DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNK 113
FR + H +P+L+ + E++ E LQ + L N++ + +
Sbjct: 23 FRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM-----LQLEAAWALTNIASGTSAQ 77
Query: 114 KLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN-KEVIGKSGALKPLIDLLD 172
V +PL + L +G++E + A AL ++ ++ ++ + + A++P++ L +
Sbjct: 78 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFN 137
Query: 173 EGHQSAMKDVASAIFNLC 190
S ++ + NLC
Sbjct: 138 SNKPSLIRTATWTLSNLC 155
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/138 (19%), Positives = 61/138 (44%), Gaps = 16/138 (11%)
Query: 64 FRALFGESH----------DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNK 113
FR + H +P+L+ + E++ E LQ + L N++ + +
Sbjct: 23 FRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM-----LQLEAAWALTNIASGTSAQ 77
Query: 114 KLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN-KEVIGKSGALKPLIDLLD 172
V +PL + L +G++E + A AL ++ ++ ++ + + A++P++ L +
Sbjct: 78 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFN 137
Query: 173 EGHQSAMKDVASAIFNLC 190
S ++ + NLC
Sbjct: 138 SNKPSLIRTATWTLSNLC 155
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/138 (19%), Positives = 61/138 (44%), Gaps = 16/138 (11%)
Query: 64 FRALFGESH----------DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNK 113
FR + H +P+L+ + E++ E LQ + L N++ + +
Sbjct: 25 FRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM-----LQLEAAWALTNIASGTSAQ 79
Query: 114 KLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN-KEVIGKSGALKPLIDLLD 172
V +PL + L +G++E + A AL ++ ++ ++ + + A++P++ L +
Sbjct: 80 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFN 139
Query: 173 EGHQSAMKDVASAIFNLC 190
S ++ + NLC
Sbjct: 140 SNKPSLIRTATWTLSNLC 157
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/138 (19%), Positives = 61/138 (44%), Gaps = 16/138 (11%)
Query: 64 FRALFGESH----------DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNK 113
FR + H +P+L+ + E++ E LQ + L N++ + +
Sbjct: 25 FRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM-----LQLEAAWALTNIASGTSAQ 79
Query: 114 KLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN-KEVIGKSGALKPLIDLLD 172
V +PL + L +G++E + A AL ++ ++ ++ + + A++P++ L +
Sbjct: 80 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFN 139
Query: 173 EGHQSAMKDVASAIFNLC 190
S ++ + NLC
Sbjct: 140 SNKPSLIRTATWTLSNLC 157
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 75 IPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGT 134
+P+L+ + E++ E LQ + L N++ + + V +PL + L +G+
Sbjct: 132 VPRLVEFMRENQPEM-----LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGS 186
Query: 135 IETRSNAAAALFTLSALDSN-KEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLC 190
+E + A AL ++ ++ ++ + + A++P++ L + S ++ + NLC
Sbjct: 187 VEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC 243
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/138 (19%), Positives = 61/138 (44%), Gaps = 16/138 (11%)
Query: 64 FRALFGESH----------DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNK 113
FR + H +P+L+ + E++ E LQ + L N++ + +
Sbjct: 24 FRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM-----LQLEAAWALTNIASGTSAQ 78
Query: 114 KLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN-KEVIGKSGALKPLIDLLD 172
V +PL + L +G++E + A AL ++ ++ ++ + + A++P++ L +
Sbjct: 79 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFN 138
Query: 173 EGHQSAMKDVASAIFNLC 190
S ++ + NLC
Sbjct: 139 SNKPSLIRTATWTLSNLC 156
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 75 IPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGT 134
+P+L+ + E++ E LQ + L N++ + + V +PL + L +G+
Sbjct: 45 VPRLVEFMRENQPEM-----LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGS 99
Query: 135 IETRSNAAAALFTLSALDSN-KEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLC 190
+E + A AL ++ ++ ++ + + A++P++ L + S ++ + NLC
Sbjct: 100 VEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC 156
>pdb|3NOW|A Chain A, Unc-45 From Drosophila Melanogaster
Length = 810
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 78/175 (44%), Gaps = 10/175 (5%)
Query: 144 ALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDG 203
A TL A + +++I ++ L+DL G+QS + V + NLC +E +
Sbjct: 404 AYLTLDA-ECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMI 462
Query: 204 GVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENC 263
++ K+ H+ E + + N R + G++ L + ++ ++E
Sbjct: 463 ELAKFAKQ-----HIPEEHELDDVDFINKRITVLANE--GITTALCALAKTESHNSQELI 515
Query: 264 IAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVN 318
+L+ +C + K + +E + ++A +GT + KR AT L R+ T+N
Sbjct: 516 ARVLNAVCGLKELRGKVV--QEGGVKALLRMALEGTEKGKRHATQALARIGITIN 568
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 13/149 (8%)
Query: 47 QTEAAKELRLL--TKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLL 104
Q EA + R L +R P + +P+ + L+ P LQ + L
Sbjct: 91 QLEATTQFRKLLSIERSPPIEEVI--QSGVVPRFVQFLTREDF-----PQLQFEAAWALT 143
Query: 105 NLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNK--EVIGKSG 162
N++ + V +P+ + L S + + R A AL ++ DS K +++ +G
Sbjct: 144 NIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAG-DSPKCRDLVLANG 202
Query: 163 ALKPLIDLLDEGHQ-SAMKDVASAIFNLC 190
AL PL+ L+E + S +++ + N C
Sbjct: 203 ALLPLLAQLNEHTKLSMLRNATWTLSNFC 231
>pdb|3TT9|A Chain A, Crystal Structure Of The Stable Degradation Fragment Of
Human Plakophilin 2 Isoform A (Pkp2a) C752r Variant
Length = 233
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 92 NPNLQEDVITTLLNLSIHDNNKKL-VAETPMVIPLLMDALRSGTIETRSNAAAALFTLSA 150
N ++Q V L NL DN+ KL VAE V LL ++ +ET+ L+ LS+
Sbjct: 65 NEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS 124
Query: 151 LDSNKEVI 158
D K ++
Sbjct: 125 NDKLKNLM 132
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 13/149 (8%)
Query: 47 QTEAAKELR--LLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLL 104
Q EA + R L +R P + +P+ + L+ P LQ + L
Sbjct: 53 QLEATTQFRKLLSIERSPPIEEVI--QSGVVPRFVQFLTREDF-----PQLQFEAAWALT 105
Query: 105 NLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNK--EVIGKSG 162
N++ + V +P+ + L S + + R A AL ++ DS K +++ +G
Sbjct: 106 NIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAG-DSPKCRDLVLANG 164
Query: 163 ALKPLIDLLDEGHQ-SAMKDVASAIFNLC 190
AL PL+ L+E + S +++ + N C
Sbjct: 165 ALLPLLAQLNEHTKLSMLRNATWTLSNFC 193
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 69/160 (43%), Gaps = 9/160 (5%)
Query: 106 LSIHDNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGAL 164
LS + ++ + +P ++ ++ ++ + +ET + L LS I KSG +
Sbjct: 177 LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGI 236
Query: 165 KPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDEL--- 221
L+++L S + + + NL + E AVR G + +++ +V L
Sbjct: 237 PALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAIT 296
Query: 222 ---LAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDR 258
L ILA + + + I GG ++ I+R T ++
Sbjct: 297 TDCLQILAYGNQESKLI--ILASGGPQALVNIMRTYTYEK 334
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 68/160 (42%), Gaps = 9/160 (5%)
Query: 106 LSIHDNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGAL 164
LS + ++ + +P ++ ++ ++ + +ET A L LS I KSG +
Sbjct: 42 LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGI 101
Query: 165 KPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDEL--- 221
L+ +L S + + + NL + E AVR G + +++ +V L
Sbjct: 102 PALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAIT 161
Query: 222 ---LAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDR 258
L ILA + + + I GG ++ I+R T ++
Sbjct: 162 TDCLQILAYGNQESKLI--ILASGGPQALVNIMRTYTYEK 199
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Query: 105 NLSIHDNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGA 163
LS + ++ + +P ++ ++ ++ + +ET A L LS I KSG
Sbjct: 30 QLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGG 89
Query: 164 LKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGG 204
+ L+ +L S + + + NL + E AVR G
Sbjct: 90 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG 130
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Query: 105 NLSIHDNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGA 163
LS + ++ + +P ++ ++ ++ + +ET A L LS I KSG
Sbjct: 32 QLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGG 91
Query: 164 LKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGG 204
+ L+ +L S + + + NL + E AVR G
Sbjct: 92 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG 132
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Query: 105 NLSIHDNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGA 163
LS + ++ + +P ++ ++ ++ + +ET A L LS I KSG
Sbjct: 28 QLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGG 87
Query: 164 LKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGG 204
+ L+ +L S + + + NL + E AVR G
Sbjct: 88 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG 128
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Query: 105 NLSIHDNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGA 163
LS + ++ + +P ++ ++ ++ + +ET A L LS I KSG
Sbjct: 28 QLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGG 87
Query: 164 LKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGG 204
+ L+ +L S + + + NL + E AVR G
Sbjct: 88 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG 128
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 106 LSIHDNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGAL 164
LS + ++ + +P ++ ++ ++ + +ET A L LS I KSG +
Sbjct: 46 LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGI 105
Query: 165 KPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGG 204
L+ +L S + + + NL + E AVR G
Sbjct: 106 PALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG 145
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 106 LSIHDNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGAL 164
LS + ++ + +P ++ ++ ++ + +ET A L LS I KSG +
Sbjct: 47 LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGI 106
Query: 165 KPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGG 204
L+ +L S + + + NL + E AVR G
Sbjct: 107 PALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG 146
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 106 LSIHDNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGAL 164
LS + ++ + +P ++ ++ ++ + +ET A L LS I KSG +
Sbjct: 46 LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGI 105
Query: 165 KPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGG 204
L+ +L S + + + NL + E AVR G
Sbjct: 106 PALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG 145
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 106 LSIHDNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGAL 164
LS + ++ + +P ++ ++ ++ + +ET A L LS I KSG +
Sbjct: 45 LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGI 104
Query: 165 KPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGG 204
L+ +L S + + + NL + E AVR G
Sbjct: 105 PALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG 144
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 68/161 (42%), Gaps = 9/161 (5%)
Query: 105 NLSIHDNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGA 163
LS + ++ + +P ++ ++ ++ + +ET A L LS I KSG
Sbjct: 40 QLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGG 99
Query: 164 LKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDEL-- 221
+ L+ +L S + + + NL + E AVR G + +++ +V L
Sbjct: 100 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAI 159
Query: 222 ----LAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDR 258
L ILA + + + I GG ++ I+R T ++
Sbjct: 160 TTDCLQILAYGNQESKLI--ILASGGPQALVNIMRTYTYEK 198
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 106 LSIHDNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGAL 164
LS + ++ + +P ++ ++ ++ + +ET A L LS I KSG +
Sbjct: 44 LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGI 103
Query: 165 KPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGG 204
L+ +L S + + + NL + E AVR G
Sbjct: 104 PALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG 143
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 106 LSIHDNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGAL 164
LS + ++ + +P ++ ++ ++ + +ET A L LS I KSG +
Sbjct: 48 LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGI 107
Query: 165 KPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGG 204
L+ +L S + + + NL + E AVR G
Sbjct: 108 PALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG 147
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 106 LSIHDNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGAL 164
LS + ++ + +P ++ ++ ++ + +ET A L LS I KSG +
Sbjct: 42 LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGI 101
Query: 165 KPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGG 204
L+ +L S + + + NL + E AVR G
Sbjct: 102 PALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,597,120
Number of Sequences: 62578
Number of extensions: 318968
Number of successful extensions: 966
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 911
Number of HSP's gapped (non-prelim): 88
length of query: 323
length of database: 14,973,337
effective HSP length: 99
effective length of query: 224
effective length of database: 8,778,115
effective search space: 1966297760
effective search space used: 1966297760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)