Query 020640
Match_columns 323
No_of_seqs 156 out of 1410
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 03:59:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020640.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020640hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 6.1E-29 1.3E-33 257.8 32.2 280 28-315 10-312 (2102)
2 PLN03200 cellulose synthase-in 100.0 1.5E-28 3.3E-33 255.0 31.8 282 29-320 444-769 (2102)
3 KOG0166 Karyopherin (importin) 100.0 1.3E-28 2.9E-33 225.9 25.4 282 29-318 107-396 (514)
4 KOG4224 Armadillo repeat prote 100.0 1.2E-28 2.5E-33 213.6 19.4 275 31-315 126-405 (550)
5 KOG4224 Armadillo repeat prote 100.0 3.1E-28 6.7E-33 210.9 20.0 278 28-316 164-447 (550)
6 KOG0166 Karyopherin (importin) 100.0 2.8E-27 6.1E-32 217.2 24.5 284 29-319 150-440 (514)
7 COG5064 SRP1 Karyopherin (impo 99.9 8.8E-26 1.9E-30 194.3 17.1 278 28-316 111-399 (526)
8 COG5064 SRP1 Karyopherin (impo 99.9 3.6E-25 7.8E-30 190.5 17.6 281 28-318 154-446 (526)
9 KOG2122 Beta-catenin-binding p 99.9 5.3E-22 1.2E-26 195.3 18.4 269 47-319 315-605 (2195)
10 PF05804 KAP: Kinesin-associat 99.9 9.6E-21 2.1E-25 183.0 26.4 284 28-318 120-482 (708)
11 PF05804 KAP: Kinesin-associat 99.9 2.3E-20 5.1E-25 180.3 27.6 264 34-315 253-520 (708)
12 KOG4199 Uncharacterized conser 99.8 9.3E-18 2E-22 144.8 24.2 283 28-319 142-448 (461)
13 KOG4199 Uncharacterized conser 99.8 1.2E-17 2.5E-22 144.2 24.7 264 47-321 124-409 (461)
14 KOG1048 Neural adherens juncti 99.8 1.5E-17 3.3E-22 157.9 20.5 278 31-317 233-597 (717)
15 KOG1048 Neural adherens juncti 99.7 1.2E-15 2.6E-20 145.1 22.8 286 29-322 273-691 (717)
16 PF04826 Arm_2: Armadillo-like 99.7 1.3E-15 2.9E-20 131.5 21.2 227 69-306 9-253 (254)
17 KOG2122 Beta-catenin-binding p 99.7 6.3E-16 1.4E-20 153.2 16.9 243 28-277 336-606 (2195)
18 PF04826 Arm_2: Armadillo-like 99.7 2E-14 4.4E-19 124.2 21.7 190 29-231 10-206 (254)
19 KOG1222 Kinesin associated pro 99.6 1.5E-13 3.2E-18 124.0 20.8 278 33-318 136-496 (791)
20 KOG4500 Rho/Rac GTPase guanine 99.6 7.4E-13 1.6E-17 118.1 21.8 284 30-316 86-476 (604)
21 PF10508 Proteasom_PSMB: Prote 99.6 3.9E-12 8.4E-17 121.6 27.4 275 34-320 41-324 (503)
22 PF10508 Proteasom_PSMB: Prote 99.5 2.7E-11 6E-16 115.7 27.7 277 30-317 76-368 (503)
23 KOG1222 Kinesin associated pro 99.4 1E-10 2.2E-15 106.0 25.0 279 30-318 259-666 (791)
24 cd00020 ARM Armadillo/beta-cat 99.4 1E-11 2.3E-16 95.3 14.5 116 198-315 2-120 (120)
25 cd00020 ARM Armadillo/beta-cat 99.4 8.9E-12 1.9E-16 95.7 13.3 115 157-272 2-120 (120)
26 KOG0946 ER-Golgi vesicle-tethe 99.3 1E-09 2.2E-14 104.6 25.9 280 27-315 18-346 (970)
27 PF03224 V-ATPase_H_N: V-ATPas 99.3 1.6E-10 3.4E-15 104.2 19.1 252 50-305 30-304 (312)
28 cd00256 VATPase_H VATPase_H, r 99.3 1.3E-09 2.9E-14 100.4 23.5 275 32-315 102-425 (429)
29 KOG4500 Rho/Rac GTPase guanine 99.3 1.4E-09 3E-14 97.5 20.8 282 32-315 224-519 (604)
30 PRK09687 putative lyase; Provi 99.1 9.1E-09 2E-13 90.9 19.7 235 29-312 21-279 (280)
31 PF03224 V-ATPase_H_N: V-ATPas 99.1 5.4E-09 1.2E-13 94.3 14.8 214 32-252 56-293 (312)
32 KOG2759 Vacuolar H+-ATPase V1 99.0 1E-07 2.3E-12 85.5 21.4 224 90-316 168-439 (442)
33 PRK09687 putative lyase; Provi 99.0 3.5E-08 7.5E-13 87.3 17.3 195 74-315 24-221 (280)
34 KOG2160 Armadillo/beta-catenin 99.0 8.7E-08 1.9E-12 84.8 18.8 181 133-314 95-281 (342)
35 PRK13800 putative oxidoreducta 98.9 3.3E-07 7.2E-12 93.9 23.9 224 29-313 619-865 (897)
36 KOG2160 Armadillo/beta-catenin 98.9 5.6E-07 1.2E-11 79.7 20.5 226 43-277 96-334 (342)
37 KOG0168 Putative ubiquitin fus 98.9 5.2E-07 1.1E-11 87.2 21.4 255 31-297 167-437 (1051)
38 KOG0168 Putative ubiquitin fus 98.9 3.2E-07 7E-12 88.6 19.3 230 75-316 169-414 (1051)
39 PRK13800 putative oxidoreducta 98.8 9.4E-07 2E-11 90.6 23.6 225 30-311 651-895 (897)
40 cd00256 VATPase_H VATPase_H, r 98.7 5.2E-06 1.1E-10 76.9 22.7 228 73-305 53-298 (429)
41 PF01602 Adaptin_N: Adaptin N 98.7 1.2E-06 2.7E-11 84.7 19.7 251 32-316 80-334 (526)
42 KOG0946 ER-Golgi vesicle-tethe 98.7 1.4E-06 3E-11 83.8 18.6 215 72-296 21-264 (970)
43 PF01602 Adaptin_N: Adaptin N 98.7 1.7E-06 3.8E-11 83.6 19.7 251 32-315 115-369 (526)
44 KOG4646 Uncharacterized conser 98.7 2.2E-07 4.8E-12 70.8 10.1 147 31-186 16-165 (173)
45 KOG3678 SARM protein (with ste 98.7 1.2E-06 2.7E-11 79.7 16.6 262 30-316 179-453 (832)
46 KOG1293 Proteins containing ar 98.7 1.5E-06 3.2E-11 82.1 17.1 142 174-316 389-534 (678)
47 KOG1293 Proteins containing ar 98.6 3.4E-06 7.4E-11 79.7 18.3 217 63-282 316-543 (678)
48 PF14664 RICTOR_N: Rapamycin-i 98.6 1.5E-05 3.2E-10 73.2 20.3 255 57-322 10-276 (371)
49 KOG4646 Uncharacterized conser 98.5 4.7E-07 1E-11 69.1 8.3 129 75-209 18-147 (173)
50 KOG2171 Karyopherin (importin) 98.5 3.8E-05 8.3E-10 77.1 23.6 261 44-313 263-547 (1075)
51 PF05536 Neurochondrin: Neuroc 98.5 1.5E-05 3.3E-10 76.8 19.8 240 74-321 6-267 (543)
52 KOG2973 Uncharacterized conser 98.5 5.9E-06 1.3E-10 71.7 13.7 233 75-320 5-278 (353)
53 KOG2171 Karyopherin (importin) 98.5 6.3E-05 1.4E-09 75.6 22.8 258 32-319 5-282 (1075)
54 PF05536 Neurochondrin: Neuroc 98.4 6.3E-05 1.4E-09 72.6 21.0 238 31-273 5-262 (543)
55 KOG2023 Nuclear transport rece 98.3 1.6E-05 3.5E-10 75.4 14.4 279 31-319 128-467 (885)
56 PTZ00429 beta-adaptin; Provisi 98.3 0.00047 1E-08 68.7 25.1 208 90-315 116-326 (746)
57 PTZ00429 beta-adaptin; Provisi 98.3 0.00039 8.6E-09 69.3 24.4 253 30-316 31-286 (746)
58 PF14664 RICTOR_N: Rapamycin-i 98.2 0.00066 1.4E-08 62.5 22.2 275 32-317 26-366 (371)
59 PF00514 Arm: Armadillo/beta-c 98.2 3.2E-06 6.9E-11 51.7 4.7 41 231-272 1-41 (41)
60 PF10165 Ric8: Guanine nucleot 98.2 0.00034 7.3E-09 66.2 20.2 232 42-276 44-341 (446)
61 KOG2973 Uncharacterized conser 98.2 0.00039 8.6E-09 60.6 18.4 237 28-276 41-319 (353)
62 KOG2759 Vacuolar H+-ATPase V1 98.2 0.00068 1.5E-08 61.5 20.4 259 47-311 36-317 (442)
63 COG5369 Uncharacterized conser 98.1 8.2E-05 1.8E-09 69.2 13.4 195 100-296 410-618 (743)
64 KOG1517 Guanine nucleotide bin 98.1 0.00049 1.1E-08 68.7 19.2 251 3-277 458-737 (1387)
65 KOG3678 SARM protein (with ste 98.0 0.00024 5.1E-09 65.2 15.2 179 64-252 172-358 (832)
66 COG5231 VMA13 Vacuolar H+-ATPa 98.0 0.00069 1.5E-08 59.4 17.1 223 92-315 162-428 (432)
67 KOG0212 Uncharacterized conser 98.0 0.00059 1.3E-08 64.0 17.3 272 31-317 167-446 (675)
68 PF00514 Arm: Armadillo/beta-c 98.0 1.1E-05 2.4E-10 49.3 4.2 40 61-107 1-40 (41)
69 KOG2734 Uncharacterized conser 98.0 0.0044 9.6E-08 56.7 22.2 256 49-316 103-401 (536)
70 KOG1059 Vesicle coat complex A 98.0 0.0039 8.5E-08 60.2 22.6 217 27-272 140-365 (877)
71 KOG1059 Vesicle coat complex A 98.0 0.0031 6.6E-08 60.9 21.8 266 28-322 178-450 (877)
72 KOG2023 Nuclear transport rece 97.9 0.0003 6.6E-09 67.1 14.0 264 31-315 174-505 (885)
73 PF10165 Ric8: Guanine nucleot 97.9 0.0017 3.6E-08 61.5 19.4 264 51-317 2-339 (446)
74 KOG1241 Karyopherin (importin) 97.9 0.00074 1.6E-08 65.4 16.7 257 44-317 188-479 (859)
75 KOG4413 26S proteasome regulat 97.9 0.0048 1E-07 54.5 20.2 239 74-317 79-335 (524)
76 KOG2734 Uncharacterized conser 97.9 0.016 3.6E-07 53.1 23.6 245 28-274 122-402 (536)
77 TIGR02270 conserved hypothetic 97.9 0.0054 1.2E-07 57.2 21.5 220 29-316 52-297 (410)
78 KOG1241 Karyopherin (importin) 97.8 0.0027 5.8E-08 61.6 18.5 268 31-318 129-438 (859)
79 KOG0212 Uncharacterized conser 97.7 0.0021 4.5E-08 60.4 15.8 241 75-322 165-413 (675)
80 KOG1789 Endocytosis protein RM 97.7 0.0013 2.9E-08 65.8 15.2 140 135-274 1739-1885(2235)
81 PF12348 CLASP_N: CLASP N term 97.6 0.0018 3.9E-08 55.5 13.8 182 132-318 18-209 (228)
82 TIGR02270 conserved hypothetic 97.6 0.012 2.7E-07 54.8 19.9 191 73-315 54-267 (410)
83 PF13646 HEAT_2: HEAT repeats; 97.6 0.00032 7E-09 50.3 7.3 87 75-187 1-88 (88)
84 smart00185 ARM Armadillo/beta- 97.6 0.00011 2.4E-09 44.5 4.2 40 152-191 2-41 (41)
85 KOG1824 TATA-binding protein-i 97.6 0.0084 1.8E-07 59.7 18.8 271 27-315 564-886 (1233)
86 COG5231 VMA13 Vacuolar H+-ATPa 97.6 0.0079 1.7E-07 53.0 16.7 223 44-272 163-428 (432)
87 PF13646 HEAT_2: HEAT repeats; 97.6 0.00037 8.1E-09 50.0 7.6 84 123-226 1-88 (88)
88 KOG4413 26S proteasome regulat 97.6 0.019 4.2E-07 50.8 18.9 261 44-315 96-377 (524)
89 KOG1062 Vesicle coat complex A 97.6 0.029 6.2E-07 55.1 21.7 266 30-319 102-419 (866)
90 KOG1789 Endocytosis protein RM 97.5 0.062 1.3E-06 54.6 23.5 242 42-297 1784-2141(2235)
91 PF12348 CLASP_N: CLASP N term 97.4 0.0013 2.8E-08 56.4 10.0 187 90-281 18-215 (228)
92 smart00185 ARM Armadillo/beta- 97.4 0.00042 9.2E-09 41.8 5.0 40 62-108 2-41 (41)
93 PF11841 DUF3361: Domain of un 97.4 0.0066 1.4E-07 48.4 12.8 121 155-276 4-135 (160)
94 KOG1062 Vesicle coat complex A 97.3 0.047 1E-06 53.7 19.8 264 28-319 68-383 (866)
95 COG1413 FOG: HEAT repeat [Ener 97.3 0.031 6.8E-07 50.8 18.0 189 73-312 43-239 (335)
96 COG5240 SEC21 Vesicle coat com 97.3 0.088 1.9E-06 50.1 20.5 246 44-315 278-555 (898)
97 PF09759 Atx10homo_assoc: Spin 97.3 0.0021 4.5E-08 47.4 8.0 66 217-283 2-69 (102)
98 KOG0213 Splicing factor 3b, su 97.3 0.062 1.3E-06 52.6 19.8 150 32-191 800-954 (1172)
99 PF13513 HEAT_EZ: HEAT-like re 97.2 0.001 2.2E-08 43.3 5.5 55 257-313 1-55 (55)
100 PF04063 DUF383: Domain of unk 97.2 0.0052 1.1E-07 51.1 10.7 120 174-295 7-156 (192)
101 KOG1061 Vesicle coat complex A 97.2 0.0099 2.1E-07 58.0 13.9 144 32-189 122-266 (734)
102 KOG1242 Protein containing ada 97.2 0.041 8.8E-07 52.6 17.6 245 27-298 212-465 (569)
103 KOG1077 Vesicle coat complex A 97.2 0.062 1.3E-06 52.2 18.7 236 44-305 162-423 (938)
104 COG1413 FOG: HEAT repeat [Ener 97.1 0.11 2.4E-06 47.2 20.0 184 31-272 43-242 (335)
105 COG5369 Uncharacterized conser 97.1 0.0039 8.5E-08 58.4 10.1 260 47-314 406-740 (743)
106 PF13764 E3_UbLigase_R4: E3 ub 97.1 0.2 4.3E-06 50.6 22.5 242 67-317 112-408 (802)
107 KOG1242 Protein containing ada 97.1 0.048 1E-06 52.1 17.2 169 136-314 269-443 (569)
108 PF11841 DUF3361: Domain of un 97.1 0.014 3E-07 46.6 11.5 121 196-317 4-133 (160)
109 PF13513 HEAT_EZ: HEAT-like re 97.1 0.00076 1.6E-08 43.9 3.7 55 135-189 1-55 (55)
110 PF09759 Atx10homo_assoc: Spin 97.1 0.0032 6.9E-08 46.4 7.1 68 46-118 2-70 (102)
111 KOG1077 Vesicle coat complex A 97.0 0.12 2.7E-06 50.2 19.3 254 42-319 123-402 (938)
112 KOG4151 Myosin assembly protei 97.0 0.016 3.5E-07 56.7 13.6 200 108-314 492-698 (748)
113 PF07814 WAPL: Wings apart-lik 97.0 0.075 1.6E-06 49.0 17.5 275 31-320 21-360 (361)
114 PF04063 DUF383: Domain of unk 96.9 0.0066 1.4E-07 50.4 8.9 112 91-202 7-143 (192)
115 KOG3036 Protein involved in ce 96.9 0.21 4.6E-06 42.6 19.7 207 31-240 26-257 (293)
116 KOG2259 Uncharacterized conser 96.9 0.025 5.5E-07 54.4 13.6 243 36-311 203-471 (823)
117 PF04078 Rcd1: Cell differenti 96.9 0.086 1.9E-06 45.5 15.5 219 92-314 8-261 (262)
118 COG5181 HSH155 U2 snRNP splice 96.8 0.065 1.4E-06 51.4 14.7 147 31-190 604-758 (975)
119 COG5215 KAP95 Karyopherin (imp 96.7 0.11 2.4E-06 49.5 15.9 248 44-315 192-479 (858)
120 KOG3036 Protein involved in ce 96.7 0.081 1.8E-06 45.1 13.5 150 47-199 96-255 (293)
121 PF05004 IFRD: Interferon-rela 96.6 0.3 6.6E-06 43.9 17.8 188 125-317 47-259 (309)
122 KOG1824 TATA-binding protein-i 96.6 0.086 1.9E-06 52.9 15.0 263 35-319 9-290 (1233)
123 KOG1517 Guanine nucleotide bin 96.5 0.15 3.4E-06 51.7 16.2 218 96-314 487-731 (1387)
124 PF12755 Vac14_Fab1_bd: Vacuol 96.5 0.032 6.9E-07 41.0 8.8 93 218-314 3-96 (97)
125 PF06371 Drf_GBD: Diaphanous G 96.5 0.051 1.1E-06 44.9 11.2 117 31-149 66-186 (187)
126 KOG2999 Regulator of Rac1, req 96.5 0.12 2.5E-06 49.0 14.2 153 123-276 85-246 (713)
127 COG5215 KAP95 Karyopherin (imp 96.4 0.57 1.2E-05 44.9 18.3 271 31-318 133-440 (858)
128 KOG1248 Uncharacterized conser 96.3 0.28 6E-06 50.5 17.0 214 90-315 665-898 (1176)
129 KOG2611 Neurochondrin/leucine- 96.3 0.3 6.4E-06 45.7 15.7 181 126-311 16-221 (698)
130 KOG1061 Vesicle coat complex A 96.3 0.073 1.6E-06 52.2 12.2 245 32-306 50-299 (734)
131 KOG2611 Neurochondrin/leucine- 96.2 0.91 2E-05 42.6 18.5 179 90-274 22-227 (698)
132 KOG1788 Uncharacterized conser 96.2 0.51 1.1E-05 48.3 17.6 254 50-318 662-985 (2799)
133 PF04078 Rcd1: Cell differenti 96.1 0.21 4.5E-06 43.2 13.2 143 175-317 8-170 (262)
134 PF08569 Mo25: Mo25-like; Int 96.1 0.7 1.5E-05 42.0 17.2 196 121-317 76-285 (335)
135 PF12031 DUF3518: Domain of un 96.1 0.02 4.3E-07 48.6 6.6 87 216-302 139-232 (257)
136 PF11698 V-ATPase_H_C: V-ATPas 95.9 0.025 5.4E-07 42.9 6.0 72 243-315 44-115 (119)
137 PF13764 E3_UbLigase_R4: E3 ub 95.9 1.7 3.7E-05 44.1 20.3 220 28-252 114-385 (802)
138 KOG0213 Splicing factor 3b, su 95.9 0.47 1E-05 46.8 15.5 216 90-314 810-1064(1172)
139 PF08569 Mo25: Mo25-like; Int 95.8 0.59 1.3E-05 42.5 15.4 214 30-253 75-308 (335)
140 PF11698 V-ATPase_H_C: V-ATPas 95.8 0.045 9.7E-07 41.5 6.8 77 23-106 35-113 (119)
141 COG5181 HSH155 U2 snRNP splice 95.8 0.32 6.9E-06 46.9 13.8 151 163-315 605-759 (975)
142 PF12755 Vac14_Fab1_bd: Vacuol 95.8 0.069 1.5E-06 39.2 7.7 91 47-148 3-94 (97)
143 PF14668 RICTOR_V: Rapamycin-i 95.7 0.079 1.7E-06 36.5 7.2 68 218-287 4-71 (73)
144 KOG1078 Vesicle coat complex C 95.6 2.4 5.2E-05 42.1 19.0 254 35-315 249-532 (865)
145 PF08045 CDC14: Cell division 95.5 0.17 3.6E-06 43.9 10.2 96 218-314 108-206 (257)
146 PF12717 Cnd1: non-SMC mitotic 95.4 1.2 2.6E-05 36.5 15.2 93 92-192 1-93 (178)
147 COG5096 Vesicle coat complex, 95.3 1.5 3.3E-05 43.9 17.3 165 130-315 28-195 (757)
148 KOG2999 Regulator of Rac1, req 95.3 0.36 7.9E-06 45.8 12.3 153 163-316 84-243 (713)
149 COG5096 Vesicle coat complex, 95.3 0.72 1.6E-05 46.1 15.0 147 31-192 38-196 (757)
150 PF08045 CDC14: Cell division 95.2 0.23 4.9E-06 43.1 10.1 97 47-150 108-207 (257)
151 KOG1060 Vesicle coat complex A 95.2 3.7 8E-05 41.0 22.0 248 44-321 157-464 (968)
152 PF05004 IFRD: Interferon-rela 95.2 1.7 3.7E-05 39.1 16.1 178 91-271 55-256 (309)
153 KOG4151 Myosin assembly protei 95.2 0.17 3.6E-06 49.9 10.0 153 31-191 541-699 (748)
154 PF11701 UNC45-central: Myosin 95.1 0.18 4E-06 40.5 8.7 143 33-187 5-155 (157)
155 KOG1240 Protein kinase contain 95.1 0.67 1.5E-05 48.0 14.1 263 33-315 424-725 (1431)
156 PF12719 Cnd3: Nuclear condens 95.0 2.5 5.4E-05 37.8 17.4 185 31-230 26-233 (298)
157 KOG1058 Vesicle coat complex C 95.0 2 4.3E-05 42.6 16.5 54 42-106 146-199 (948)
158 PF06025 DUF913: Domain of Unk 95.0 3.1 6.6E-05 38.6 19.8 209 49-277 3-237 (379)
159 PF06371 Drf_GBD: Diaphanous G 94.9 0.52 1.1E-05 38.8 11.4 110 204-314 67-186 (187)
160 KOG1943 Beta-tubulin folding c 94.9 4.4 9.6E-05 41.8 19.2 238 31-304 341-600 (1133)
161 KOG2032 Uncharacterized conser 94.9 2.7 5.8E-05 39.6 16.4 240 72-315 253-531 (533)
162 PF14668 RICTOR_V: Rapamycin-i 94.9 0.23 4.9E-06 34.3 7.3 64 179-242 4-70 (73)
163 PF12717 Cnd1: non-SMC mitotic 94.8 0.88 1.9E-05 37.3 12.3 93 43-151 1-93 (178)
164 PF11701 UNC45-central: Myosin 94.6 0.21 4.5E-06 40.2 7.8 146 73-227 3-156 (157)
165 KOG2274 Predicted importin 9 [ 94.6 5.5 0.00012 40.4 18.6 155 31-193 530-691 (1005)
166 COG5240 SEC21 Vesicle coat com 94.6 4.7 0.0001 39.0 19.3 170 90-272 275-460 (898)
167 KOG0567 HEAT repeat-containing 94.6 0.55 1.2E-05 40.6 10.5 147 4-190 128-279 (289)
168 PF02985 HEAT: HEAT repeat; I 94.3 0.066 1.4E-06 30.1 3.2 28 164-191 2-29 (31)
169 PF12460 MMS19_C: RNAPII trans 94.3 2.4 5.2E-05 39.9 15.5 146 135-293 248-413 (415)
170 PF05918 API5: Apoptosis inhib 94.3 0.45 9.7E-06 45.9 10.4 132 31-187 23-158 (556)
171 PF06025 DUF913: Domain of Unk 94.3 4.6 9.9E-05 37.5 17.8 96 75-173 108-207 (379)
172 PF12460 MMS19_C: RNAPII trans 94.2 2.1 4.6E-05 40.3 14.9 192 28-232 186-396 (415)
173 KOG4535 HEAT and armadillo rep 94.1 0.08 1.7E-06 49.3 4.8 181 134-314 404-602 (728)
174 PF02985 HEAT: HEAT repeat; I 94.1 0.12 2.6E-06 29.0 3.9 30 287-316 1-30 (31)
175 KOG2259 Uncharacterized conser 94.0 0.25 5.4E-06 47.9 8.0 138 73-230 373-511 (823)
176 KOG3665 ZYG-1-like serine/thre 94.0 1.9 4.2E-05 43.3 14.7 197 47-268 489-693 (699)
177 KOG4653 Uncharacterized conser 93.9 2.8 6.1E-05 42.1 15.1 223 31-270 727-962 (982)
178 KOG1240 Protein kinase contain 93.9 1.7 3.8E-05 45.2 13.9 227 31-273 462-726 (1431)
179 KOG1943 Beta-tubulin folding c 93.8 5.3 0.00011 41.3 16.9 190 122-318 342-576 (1133)
180 KOG4653 Uncharacterized conser 93.5 4 8.7E-05 41.1 15.3 212 90-312 738-961 (982)
181 KOG0915 Uncharacterized conser 93.3 7.4 0.00016 41.8 17.4 234 31-274 994-1267(1702)
182 KOG1248 Uncharacterized conser 93.2 6.1 0.00013 41.2 16.5 218 42-274 666-900 (1176)
183 PF12719 Cnd3: Nuclear condens 92.9 3.7 8E-05 36.7 13.5 177 90-274 38-235 (298)
184 KOG4535 HEAT and armadillo rep 92.8 0.2 4.4E-06 46.8 5.1 152 123-274 435-605 (728)
185 KOG1832 HIV-1 Vpr-binding prot 92.6 1.9 4.1E-05 43.6 11.7 121 199-319 597-777 (1516)
186 PF08324 PUL: PUL domain; Int 92.5 4.6 9.9E-05 35.4 13.4 184 75-264 65-266 (268)
187 COG5209 RCD1 Uncharacterized p 92.3 0.96 2.1E-05 38.2 8.0 149 47-198 117-275 (315)
188 COG5209 RCD1 Uncharacterized p 92.1 0.41 8.8E-06 40.4 5.6 99 218-316 117-219 (315)
189 KOG2274 Predicted importin 9 [ 91.9 16 0.00035 37.3 21.0 221 43-276 463-693 (1005)
190 KOG0414 Chromosome condensatio 91.4 1.5 3.3E-05 45.4 9.9 129 42-190 935-1063(1251)
191 PF08324 PUL: PUL domain; Int 91.4 1.4 3E-05 38.7 8.9 155 44-201 77-241 (268)
192 KOG1967 DNA repair/transcripti 91.0 1.1 2.3E-05 45.3 8.1 153 64-224 860-1018(1030)
193 KOG0211 Protein phosphatase 2A 90.7 12 0.00025 38.1 15.2 264 33-315 357-625 (759)
194 PF12530 DUF3730: Protein of u 90.5 8.8 0.00019 33.0 12.7 138 165-318 3-154 (234)
195 KOG1058 Vesicle coat complex C 90.1 22 0.00048 35.6 15.9 220 31-275 203-466 (948)
196 PF05918 API5: Apoptosis inhib 89.6 1.9 4.1E-05 41.8 8.4 102 25-146 53-158 (556)
197 KOG0414 Chromosome condensatio 89.6 3.2 6.8E-05 43.2 10.2 141 74-230 920-1064(1251)
198 KOG1991 Nuclear transport rece 89.5 28 0.00061 35.9 17.8 137 121-259 410-564 (1010)
199 KOG3665 ZYG-1-like serine/thre 89.3 5.5 0.00012 40.1 11.8 195 102-314 494-696 (699)
200 KOG2025 Chromosome condensatio 89.0 26 0.00057 34.9 16.3 117 74-200 82-199 (892)
201 PF12031 DUF3518: Domain of un 88.4 2.2 4.8E-05 36.5 7.1 83 93-175 138-229 (257)
202 KOG1967 DNA repair/transcripti 87.8 1.7 3.7E-05 43.9 6.9 116 23-144 901-1018(1030)
203 KOG0211 Protein phosphatase 2A 87.7 31 0.00068 35.0 15.7 210 90-314 448-663 (759)
204 KOG1566 Conserved protein Mo25 87.6 20 0.00044 32.0 16.2 219 28-253 76-311 (342)
205 KOG2137 Protein kinase [Signal 87.0 34 0.00073 34.1 15.0 129 160-299 387-521 (700)
206 PF08167 RIX1: rRNA processing 86.8 5.6 0.00012 32.2 8.5 109 74-191 26-143 (165)
207 PF08167 RIX1: rRNA processing 86.8 3.9 8.4E-05 33.1 7.6 108 122-230 26-143 (165)
208 KOG2025 Chromosome condensatio 86.8 8.5 0.00018 38.2 10.8 129 135-269 60-190 (892)
209 KOG4464 Signaling protein RIC- 86.7 24 0.00051 32.9 12.9 152 164-315 47-228 (532)
210 KOG0301 Phospholipase A2-activ 86.3 37 0.00079 33.6 16.1 175 27-215 520-728 (745)
211 KOG2956 CLIP-associating prote 86.2 31 0.00067 32.7 15.8 182 32-230 287-477 (516)
212 PF13251 DUF4042: Domain of un 85.8 16 0.00034 30.1 10.7 141 46-193 2-176 (182)
213 COG5098 Chromosome condensatio 85.7 5.7 0.00012 39.3 9.0 153 162-317 240-418 (1128)
214 PF01347 Vitellogenin_N: Lipop 85.5 32 0.0007 34.1 14.9 115 92-225 448-584 (618)
215 PF11865 DUF3385: Domain of un 85.1 15 0.00033 29.5 10.2 139 162-307 10-149 (160)
216 KOG1060 Vesicle coat complex A 84.7 48 0.001 33.6 18.5 204 34-271 38-245 (968)
217 KOG1820 Microtubule-associated 84.6 23 0.0005 36.3 13.2 145 31-190 294-442 (815)
218 cd03561 VHS VHS domain family; 84.3 7.5 0.00016 30.2 7.8 72 243-315 38-112 (133)
219 KOG2933 Uncharacterized conser 84.2 9.3 0.0002 34.1 8.9 136 163-312 89-231 (334)
220 KOG2137 Protein kinase [Signal 83.9 13 0.00029 36.8 10.8 131 73-215 389-520 (700)
221 PF11707 Npa1: Ribosome 60S bi 83.7 34 0.00074 31.1 15.4 161 33-193 58-239 (330)
222 PF14726 RTTN_N: Rotatin, an a 83.7 6.2 0.00013 28.9 6.6 91 94-184 2-93 (98)
223 COG5218 YCG1 Chromosome conden 83.3 24 0.00052 34.5 11.8 100 162-265 91-192 (885)
224 KOG0301 Phospholipase A2-activ 82.9 52 0.0011 32.6 14.3 164 93-263 558-737 (745)
225 cd03569 VHS_Hrs_Vps27p VHS dom 82.8 8.6 0.00019 30.3 7.6 72 243-315 42-114 (142)
226 cd03568 VHS_STAM VHS domain fa 82.8 8.3 0.00018 30.5 7.5 72 243-315 38-110 (144)
227 PF12231 Rif1_N: Rap1-interact 82.2 24 0.00052 32.7 11.6 176 134-315 6-204 (372)
228 COG5098 Chromosome condensatio 81.8 29 0.00063 34.6 12.0 130 42-191 908-1037(1128)
229 PF00790 VHS: VHS domain; Int 81.6 11 0.00024 29.5 7.9 72 243-315 43-118 (140)
230 cd03569 VHS_Hrs_Vps27p VHS dom 81.3 8.5 0.00019 30.3 7.1 73 30-108 40-114 (142)
231 PF12530 DUF3730: Protein of u 81.2 34 0.00074 29.3 16.5 188 90-299 12-216 (234)
232 smart00288 VHS Domain present 80.8 9.6 0.00021 29.6 7.2 74 30-108 36-111 (133)
233 KOG2933 Uncharacterized conser 80.2 17 0.00037 32.4 9.1 140 31-188 88-231 (334)
234 PF11865 DUF3385: Domain of un 79.4 22 0.00048 28.6 9.1 139 122-270 11-155 (160)
235 PF11864 DUF3384: Domain of un 79.2 61 0.0013 31.0 21.0 93 216-314 230-329 (464)
236 PF10363 DUF2435: Protein of u 78.7 5.8 0.00013 28.7 5.0 71 123-194 5-75 (92)
237 PF14500 MMS19_N: Dos2-interac 78.6 46 0.00099 29.2 15.5 178 128-315 6-237 (262)
238 cd03561 VHS VHS domain family; 77.3 18 0.00039 28.0 7.8 75 30-108 36-112 (133)
239 KOG1820 Microtubule-associated 77.1 73 0.0016 32.8 13.7 175 132-315 264-443 (815)
240 PF08506 Cse1: Cse1; InterPro 76.8 63 0.0014 29.9 13.4 144 159-310 207-370 (370)
241 KOG1078 Vesicle coat complex C 76.6 91 0.002 31.6 18.7 30 286-315 466-495 (865)
242 smart00288 VHS Domain present 76.5 16 0.00035 28.3 7.3 72 243-315 38-111 (133)
243 PF14726 RTTN_N: Rotatin, an a 76.1 28 0.00061 25.5 8.0 95 45-146 2-96 (98)
244 KOG0567 HEAT repeat-containing 75.6 21 0.00046 31.2 8.2 63 72-149 217-279 (289)
245 PF10363 DUF2435: Protein of u 75.0 12 0.00026 27.0 5.8 70 31-109 3-73 (92)
246 cd03567 VHS_GGA VHS domain fam 74.9 19 0.00042 28.2 7.4 72 243-315 39-116 (139)
247 PF07814 WAPL: Wings apart-lik 74.7 29 0.00062 32.0 9.7 79 216-296 37-116 (361)
248 PF12463 DUF3689: Protein of u 74.5 65 0.0014 28.9 13.3 126 156-281 3-182 (303)
249 KOG1020 Sister chromatid cohes 74.1 60 0.0013 35.4 12.4 104 121-231 816-922 (1692)
250 PF04564 U-box: U-box domain; 74.0 4.1 8.8E-05 28.0 3.0 37 2-40 31-67 (73)
251 COG5218 YCG1 Chromosome conden 73.6 62 0.0013 31.8 11.4 109 114-231 86-197 (885)
252 KOG2062 26S proteasome regulat 73.1 1.1E+02 0.0024 31.0 15.6 121 161-298 553-677 (929)
253 KOG1020 Sister chromatid cohes 72.8 81 0.0017 34.5 12.9 110 31-156 816-927 (1692)
254 PF11707 Npa1: Ribosome 60S bi 72.7 75 0.0016 28.8 18.6 152 75-232 58-239 (330)
255 cd03567 VHS_GGA VHS domain fam 72.1 29 0.00063 27.2 7.7 77 31-108 38-116 (139)
256 KOG2032 Uncharacterized conser 72.1 52 0.0011 31.4 10.4 140 44-193 272-417 (533)
257 cd03568 VHS_STAM VHS domain fa 71.0 23 0.0005 27.9 7.0 72 31-108 37-110 (144)
258 KOG1991 Nuclear transport rece 70.8 1.4E+02 0.003 31.2 20.7 255 48-314 390-670 (1010)
259 KOG2062 26S proteasome regulat 70.7 1.3E+02 0.0027 30.6 15.9 64 243-314 589-652 (929)
260 COG5656 SXM1 Importin, protein 70.4 1.3E+02 0.0028 30.6 18.5 273 28-315 405-711 (970)
261 PF14666 RICTOR_M: Rapamycin-i 69.6 71 0.0015 27.3 14.3 128 176-315 78-225 (226)
262 PF00790 VHS: VHS domain; Int 69.0 16 0.00034 28.6 5.7 74 30-108 41-118 (140)
263 cd03572 ENTH_epsin_related ENT 68.9 30 0.00065 26.5 6.9 72 244-316 40-120 (122)
264 KOG4464 Signaling protein RIC- 68.8 94 0.002 29.1 11.1 152 124-275 48-234 (532)
265 PF04499 SAPS: SIT4 phosphatas 68.7 63 0.0014 31.1 10.6 111 203-315 21-149 (475)
266 KOG0915 Uncharacterized conser 67.9 2E+02 0.0043 31.8 18.9 149 74-231 999-1161(1702)
267 PF04869 Uso1_p115_head: Uso1 67.4 96 0.0021 28.0 14.5 156 162-317 34-233 (312)
268 PF01347 Vitellogenin_N: Lipop 66.5 26 0.00057 34.7 8.1 137 31-188 431-586 (618)
269 cd03572 ENTH_epsin_related ENT 66.4 41 0.00089 25.7 7.3 76 31-106 38-117 (122)
270 PRK14707 hypothetical protein; 65.7 2.6E+02 0.0056 32.3 20.6 235 32-278 206-451 (2710)
271 smart00638 LPD_N Lipoprotein N 63.7 1.5E+02 0.0033 29.0 15.7 129 74-223 394-538 (574)
272 KOG4231 Intracellular membrane 62.4 9.6 0.00021 36.3 3.7 72 244-316 329-400 (763)
273 PRK14707 hypothetical protein; 62.0 3E+02 0.0065 31.8 21.8 270 32-315 332-614 (2710)
274 PF08216 CTNNBL: Catenin-beta- 61.4 7.3 0.00016 29.0 2.3 77 95-179 28-104 (108)
275 PF14838 INTS5_C: Integrator c 60.7 1.9E+02 0.0042 29.2 16.4 193 28-240 178-400 (696)
276 cd03565 VHS_Tom1 VHS domain fa 59.5 72 0.0016 25.0 7.8 73 243-315 39-115 (141)
277 COG5116 RPN2 26S proteasome re 58.2 69 0.0015 31.4 8.5 109 44-174 566-674 (926)
278 KOG0413 Uncharacterized conser 58.1 55 0.0012 34.1 8.2 93 44-152 945-1037(1529)
279 PF10521 DUF2454: Protein of u 57.4 83 0.0018 27.8 8.8 70 74-149 120-202 (282)
280 PF06012 DUF908: Domain of Unk 57.4 49 0.0011 30.0 7.5 71 141-211 242-324 (329)
281 PF06012 DUF908: Domain of Unk 57.4 69 0.0015 29.1 8.4 76 217-293 238-323 (329)
282 smart00638 LPD_N Lipoprotein N 55.5 2.1E+02 0.0046 28.0 16.3 132 163-313 394-543 (574)
283 KOG1832 HIV-1 Vpr-binding prot 55.5 95 0.0021 32.2 9.3 154 140-296 328-490 (1516)
284 PF04064 DUF384: Domain of unk 55.4 56 0.0012 21.3 5.5 51 225-275 2-52 (58)
285 PF10521 DUF2454: Protein of u 55.1 1.2E+02 0.0026 26.8 9.4 69 122-190 120-202 (282)
286 PLN03205 ATR interacting prote 53.8 76 0.0016 29.6 7.8 108 163-271 324-445 (652)
287 PF04821 TIMELESS: Timeless pr 53.2 1.6E+02 0.0034 25.8 10.3 40 155-194 33-75 (266)
288 KOG2038 CAATT-binding transcri 52.5 2.7E+02 0.0059 28.5 11.7 181 32-230 213-409 (988)
289 PF08216 CTNNBL: Catenin-beta- 52.0 17 0.00036 27.1 2.9 34 48-83 64-97 (108)
290 PF07539 DRIM: Down-regulated 51.2 1.2E+02 0.0026 23.8 9.1 85 154-252 9-98 (141)
291 PF08506 Cse1: Cse1; InterPro 51.0 1.6E+02 0.0035 27.3 9.8 133 46-186 227-370 (370)
292 cd00197 VHS_ENTH_ANTH VHS, ENT 50.6 1E+02 0.0022 22.9 7.5 71 243-314 38-114 (115)
293 PF09324 DUF1981: Domain of un 50.1 70 0.0015 22.6 5.8 69 28-104 14-84 (86)
294 KOG1243 Protein kinase [Genera 49.6 66 0.0014 32.1 7.2 170 28-215 327-498 (690)
295 PF12830 Nipped-B_C: Sister ch 49.3 62 0.0013 26.7 6.2 68 244-318 10-78 (187)
296 PF12231 Rif1_N: Rap1-interact 48.9 2.2E+02 0.0048 26.3 17.3 263 42-315 5-303 (372)
297 PF01365 RYDR_ITPR: RIH domain 48.6 30 0.00066 28.9 4.4 116 113-231 35-170 (207)
298 KOG1243 Protein kinase [Genera 48.0 3E+02 0.0066 27.6 13.5 180 121-313 330-513 (690)
299 PF04499 SAPS: SIT4 phosphatas 47.1 1.6E+02 0.0034 28.4 9.4 114 67-190 15-147 (475)
300 COG5116 RPN2 26S proteasome re 47.1 42 0.00091 32.8 5.3 63 243-313 586-648 (926)
301 PF11791 Aconitase_B_N: Aconit 47.0 66 0.0014 25.6 5.6 104 27-149 18-122 (154)
302 KOG1992 Nuclear export recepto 46.8 3.5E+02 0.0075 28.0 11.6 172 75-252 500-705 (960)
303 KOG2956 CLIP-associating prote 46.7 2.7E+02 0.0059 26.7 14.7 169 135-314 301-476 (516)
304 PF08389 Xpo1: Exportin 1-like 46.5 94 0.002 23.8 6.7 62 163-225 83-148 (148)
305 cd08050 TAF6 TATA Binding Prot 46.4 2.2E+02 0.0047 26.1 9.9 104 163-271 211-339 (343)
306 PF12726 SEN1_N: SEN1 N termin 46.0 94 0.002 31.7 8.2 59 257-315 495-553 (727)
307 PF06685 DUF1186: Protein of u 45.9 2E+02 0.0044 25.0 10.8 101 161-282 30-152 (249)
308 PF09324 DUF1981: Domain of un 45.2 83 0.0018 22.2 5.5 67 239-311 14-84 (86)
309 PF14663 RasGEF_N_2: Rapamycin 44.5 1.3E+02 0.0029 22.5 7.4 39 163-201 9-47 (115)
310 KOG4231 Intracellular membrane 44.5 1E+02 0.0022 29.7 7.3 61 90-150 339-399 (763)
311 PLN03076 ARF guanine nucleotid 42.8 5.7E+02 0.012 29.3 17.9 255 44-315 1151-1489(1780)
312 KOG0413 Uncharacterized conser 40.5 60 0.0013 33.8 5.5 94 217-321 947-1041(1529)
313 KOG2073 SAP family cell cycle 40.4 93 0.002 32.1 6.9 65 235-299 183-252 (838)
314 PF08767 CRM1_C: CRM1 C termin 40.3 2.8E+02 0.0061 25.0 13.2 175 94-271 42-243 (319)
315 PF01365 RYDR_ITPR: RIH domain 39.9 85 0.0018 26.2 5.8 124 63-193 34-171 (207)
316 PF11791 Aconitase_B_N: Aconit 39.9 62 0.0013 25.7 4.5 66 207-273 41-124 (154)
317 PF08389 Xpo1: Exportin 1-like 39.8 1.2E+02 0.0026 23.1 6.4 49 135-186 100-148 (148)
318 PF14500 MMS19_N: Dos2-interac 39.7 2.6E+02 0.0056 24.5 16.6 211 41-275 10-240 (262)
319 PF14663 RasGEF_N_2: Rapamycin 38.8 61 0.0013 24.4 4.2 39 74-118 9-47 (115)
320 cd00197 VHS_ENTH_ANTH VHS, ENT 38.3 1.6E+02 0.0035 21.7 7.7 75 31-106 37-113 (115)
321 KOG1788 Uncharacterized conser 38.2 93 0.002 33.0 6.4 83 21-107 898-981 (2799)
322 KOG1993 Nuclear transport rece 35.0 5.3E+02 0.011 26.7 18.5 115 201-315 738-864 (978)
323 PF14225 MOR2-PAG1_C: Cell mor 34.9 3.1E+02 0.0068 24.0 14.0 127 30-175 110-241 (262)
324 KOG4524 Uncharacterized conser 34.9 2.1E+02 0.0046 29.9 8.3 90 123-214 805-900 (1014)
325 PF12397 U3snoRNP10: U3 small 33.9 1.5E+02 0.0032 22.2 5.8 67 122-193 7-76 (121)
326 KOG1086 Cytosolic sorting prot 33.6 4E+02 0.0086 25.3 9.1 31 124-154 176-206 (594)
327 PF14631 FancD2: Fanconi anaem 33.5 3.7E+02 0.0081 29.9 10.5 203 80-295 442-652 (1426)
328 KOG1949 Uncharacterized conser 33.0 3.5E+02 0.0075 27.6 9.1 57 90-148 185-247 (1005)
329 KOG2038 CAATT-binding transcri 32.9 4.7E+02 0.01 26.9 10.1 65 244-315 306-370 (988)
330 KOG0891 DNA-dependent protein 32.9 9E+02 0.019 28.7 14.2 192 121-316 565-764 (2341)
331 PF07923 N1221: N1221-like pro 31.9 1.2E+02 0.0025 27.1 5.6 55 28-83 57-126 (293)
332 PF07923 N1221: N1221-like pro 31.5 92 0.002 27.8 4.9 55 159-213 57-126 (293)
333 PF03810 IBN_N: Importin-beta 31.1 1.6E+02 0.0035 19.6 5.3 38 278-315 5-45 (77)
334 PF04388 Hamartin: Hamartin pr 30.3 5.9E+02 0.013 25.8 11.1 66 211-276 78-144 (668)
335 KOG1949 Uncharacterized conser 29.9 6.2E+02 0.013 25.9 11.7 141 127-274 180-333 (1005)
336 PF13251 DUF4042: Domain of un 29.1 3.3E+02 0.0071 22.4 10.6 137 178-316 2-175 (182)
337 PF12765 Cohesin_HEAT: HEAT re 28.9 55 0.0012 19.6 2.1 40 267-310 3-42 (42)
338 PF12783 Sec7_N: Guanine nucle 28.9 2.1E+02 0.0045 22.9 6.2 79 158-238 69-154 (168)
339 cd03565 VHS_Tom1 VHS domain fa 28.3 2.9E+02 0.0063 21.6 7.8 74 31-108 38-115 (141)
340 KOG4524 Uncharacterized conser 28.2 4.2E+02 0.0092 27.8 9.1 92 30-132 802-900 (1014)
341 PF12830 Nipped-B_C: Sister ch 28.2 3.3E+02 0.0073 22.3 13.7 144 163-317 9-169 (187)
342 PF10274 ParcG: Parkin co-regu 28.0 2.2E+02 0.0049 23.4 6.1 71 123-194 40-112 (183)
343 PRK10715 flk flagella biosynth 27.8 1.7E+02 0.0037 26.3 5.7 60 2-61 138-202 (335)
344 KOG2676 Uncharacterized conser 27.6 91 0.002 28.6 4.0 64 50-118 376-440 (478)
345 PF12726 SEN1_N: SEN1 N termin 27.6 6.7E+02 0.015 25.6 13.4 88 46-149 497-584 (727)
346 PF12331 DUF3636: Protein of u 27.5 1.1E+02 0.0025 24.2 4.2 54 161-214 79-147 (149)
347 PF04821 TIMELESS: Timeless pr 27.4 4.2E+02 0.0091 23.2 13.6 30 77-110 45-74 (266)
348 PF12074 DUF3554: Domain of un 25.5 5E+02 0.011 23.4 12.4 60 217-277 178-240 (339)
349 PF03130 HEAT_PBS: PBS lyase H 25.5 59 0.0013 17.2 1.6 25 138-172 2-26 (27)
350 PF04388 Hamartin: Hamartin pr 25.2 2.5E+02 0.0055 28.4 7.1 58 43-106 81-138 (668)
351 COG5095 TAF6 Transcription ini 24.9 5.2E+02 0.011 23.4 9.3 56 259-316 303-360 (450)
352 PLN03205 ATR interacting prote 24.2 6.1E+02 0.013 23.9 8.8 176 122-297 324-546 (652)
353 KOG2152 Sister chromatid cohes 24.1 5.4E+02 0.012 26.3 8.8 56 217-272 348-405 (865)
354 PF12074 DUF3554: Domain of un 24.1 5.4E+02 0.012 23.2 15.1 210 96-317 4-237 (339)
355 KOG2312 Predicted transcriptio 23.7 7.9 0.00017 38.1 -3.4 150 101-252 15-171 (847)
356 KOG2199 Signal transducing ada 23.6 4.1E+02 0.0089 24.9 7.4 72 243-315 46-118 (462)
357 COG5656 SXM1 Importin, protein 22.9 8.5E+02 0.018 25.1 20.3 157 48-213 388-549 (970)
358 smart00504 Ubox Modified RING 22.9 1.4E+02 0.0029 19.1 3.4 25 2-27 28-52 (63)
359 smart00567 EZ_HEAT E-Z type HE 22.9 1.1E+02 0.0024 16.3 2.5 27 137-173 3-29 (30)
360 PF12331 DUF3636: Protein of u 22.7 4E+02 0.0086 21.2 6.8 37 46-83 110-146 (149)
361 KOG4337 Microsomal triglycerid 21.9 8.4E+02 0.018 24.7 10.4 146 163-313 360-521 (896)
362 KOG2243 Ca2+ release channel ( 21.1 5.1E+02 0.011 28.9 8.2 76 154-231 550-626 (5019)
363 KOG0392 SNF2 family DNA-depend 21.0 1.1E+03 0.025 25.9 11.9 228 74-316 78-326 (1549)
364 PF12054 DUF3535: Domain of un 20.9 7.3E+02 0.016 23.6 10.1 51 134-189 289-340 (441)
365 PF10274 ParcG: Parkin co-regu 20.5 4.9E+02 0.011 21.5 7.7 69 243-314 39-108 (183)
366 PF14961 BROMI: Broad-minded p 20.5 1.1E+03 0.025 25.7 12.4 197 97-296 484-749 (1296)
367 cd08050 TAF6 TATA Binding Prot 20.4 6.6E+02 0.014 22.9 8.9 96 218-315 234-340 (343)
368 KOG2312 Predicted transcriptio 20.1 14 0.00029 36.5 -2.7 150 143-295 15-170 (847)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.97 E-value=6.1e-29 Score=257.84 Aligned_cols=280 Identities=18% Similarity=0.241 Sum_probs=245.2
Q ss_pred hhhhHHHHHHHHhc-C--CchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHH
Q 020640 28 ADRDHFLSLLKKMS-A--TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLL 104 (323)
Q Consensus 28 ~~~~~i~~Lv~~l~-~--~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~ 104 (323)
.....+..+++.|. . +++.|..|+..|+.+++.++++|..+.+..|+||.|+.+|+ ++++.+++.|+.+|.
T Consensus 10 ~~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~------sg~~~vk~nAaaaL~ 83 (2102)
T PLN03200 10 GTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLR------SGTLGAKVNAAAVLG 83 (2102)
T ss_pred chHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHc------CCCHHHHHHHHHHHH
Confidence 34568999999995 3 57889999999999999999999999866899999999999 678999999999999
Q ss_pred HhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC---Cchhh-hhccCChHHHHHHhhhcC---Hh
Q 020640 105 NLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD---SNKEV-IGKSGALKPLIDLLDEGH---QS 177 (323)
Q Consensus 105 ~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~---~~~~~-i~~~g~i~~Lv~lL~~~~---~~ 177 (323)
+++.+++++..|+. +|+++.|+.+|++++++.++.|+++|++|+.+. .++.. ++..|++|.|+.++++++ ..
T Consensus 84 nLS~~e~nk~~Iv~-~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~ 162 (2102)
T PLN03200 84 VLCKEEDLRVKVLL-GGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKV 162 (2102)
T ss_pred HHhcCHHHHHHHHH-cCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHH
Confidence 99999889999998 568999999999999999999999999999764 34434 557999999999999863 34
Q ss_pred HHHHHHHHHHHhccCCchhHH-HHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhc
Q 020640 178 AMKDVASAIFNLCITHENKAR-AVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRE 253 (323)
Q Consensus 178 ~~~~al~aL~~L~~~~~~~~~-i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~ 253 (323)
++..++.+|+|||...+++.. +++.|+++.|+.+|+++ ..++.|+.+|.+++.+ ++.+..+++.|+|+.|++++++
T Consensus 163 L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~s 242 (2102)
T PLN03200 163 VEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQ 242 (2102)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcc
Confidence 677889999999999998865 58899999999999977 6789999999988875 8899999999999999999986
Q ss_pred cCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCH---------HHHHHHHHHHHHHhc
Q 020640 254 STCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTA---------RAKRKATGILERLKR 315 (323)
Q Consensus 254 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~---------~~~~~A~~~L~~l~~ 315 (323)
+++..+|++|+++|.+|+.++++. +..+.+.|+++.|++++.+.+. ..++.|.|+|.|+++
T Consensus 243 g~~~~VRE~AA~AL~nLAs~s~e~-r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcg 312 (2102)
T PLN03200 243 GNEVSVRAEAAGALEALSSQSKEA-KQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICG 312 (2102)
T ss_pred CCChHHHHHHHHHHHHHhcCCHHH-HHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhC
Confidence 654689999999999999988764 5566679999999999986553 358999999999997
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.97 E-value=1.5e-28 Score=254.96 Aligned_cols=282 Identities=18% Similarity=0.224 Sum_probs=244.9
Q ss_pred hhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640 29 DRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 107 (323)
Q Consensus 29 ~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls 107 (323)
+.|+++.|+++|+ ++...|..|++.|.+++..+++++..+.+ .|+||.|+++|+ +++..+++.|+++|.|++
T Consensus 444 ~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIie-aGaIP~LV~LL~------s~~~~iqeeAawAL~NLa 516 (2102)
T PLN03200 444 GREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITA-AGGIPPLVQLLE------TGSQKAKEDSATVLWNLC 516 (2102)
T ss_pred HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHc------CCCHHHHHHHHHHHHHHh
Confidence 4568999999996 66888999999999999988889999999 999999999999 678999999999999999
Q ss_pred cccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCch--------------------------------
Q 020640 108 IHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNK-------------------------------- 155 (323)
Q Consensus 108 ~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~-------------------------------- 155 (323)
.++++...++...|+++.|+++|++++++.++.++++|.+|....++.
T Consensus 517 ~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~ 596 (2102)
T PLN03200 517 CHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVAS 596 (2102)
T ss_pred CCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcc
Confidence 987766665544568999999999999999999999999996332211
Q ss_pred -----hhh-hccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCC-chhHHHHhhCchHHHHHHhhcC--chHHHHHHHHH
Q 020640 156 -----EVI-GKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILA 226 (323)
Q Consensus 156 -----~~i-~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~ 226 (323)
... ...|+++.|+++++++++.+++.|+++|.+++.++ +.+..++..|++++++.+|+++ +.++.++++|.
T Consensus 597 ~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~ 676 (2102)
T PLN03200 597 LEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALA 676 (2102)
T ss_pred hhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHH
Confidence 111 13689999999999999999999999999999877 5677889999999999999987 67999999999
Q ss_pred HHhcC--HHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHH
Q 020640 227 MLSTN--HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKR 304 (323)
Q Consensus 227 ~l~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~ 304 (323)
|++.+ ++++..+++.|+++.|++++++++ ..+++.|+.+|.+++.+.+. ..++. ..|++++|++++++|+++.|+
T Consensus 677 nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d-~~v~e~Al~ALanLl~~~e~-~~ei~-~~~~I~~Lv~lLr~G~~~~k~ 753 (2102)
T PLN03200 677 ALSRSIKENRKVSYAAEDAIKPLIKLAKSSS-IEVAEQAVCALANLLSDPEV-AAEAL-AEDIILPLTRVLREGTLEGKR 753 (2102)
T ss_pred HHHhCCCHHHHHHHHHcCCHHHHHHHHhCCC-hHHHHHHHHHHHHHHcCchH-HHHHH-hcCcHHHHHHHHHhCChHHHH
Confidence 99963 566778899999999999999754 89999999999999999865 44555 578899999999999999999
Q ss_pred HHHHHHHHHhcchhhc
Q 020640 305 KATGILERLKRTVNLT 320 (323)
Q Consensus 305 ~A~~~L~~l~~~~~~~ 320 (323)
+|+++|.+|++..+..
T Consensus 754 ~Aa~AL~~L~~~~~~~ 769 (2102)
T PLN03200 754 NAARALAQLLKHFPVD 769 (2102)
T ss_pred HHHHHHHHHHhCCChh
Confidence 9999999999866543
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.3e-28 Score=225.90 Aligned_cols=282 Identities=15% Similarity=0.134 Sum_probs=244.7
Q ss_pred hhhHHHHHHHHhc--CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640 29 DRDHFLSLLKKMS--ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 106 (323)
Q Consensus 29 ~~~~i~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l 106 (323)
..|.+|.+|+.|+ .++..|.+|+++|.|++.++.+.-+.+++ +|++|.++.+|. +++..+++.|+++|.|+
T Consensus 107 ~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~-agavp~fi~Ll~------s~~~~v~eQavWALgNI 179 (514)
T KOG0166|consen 107 QSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVD-AGAVPIFIQLLS------SPSADVREQAVWALGNI 179 (514)
T ss_pred HcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccccc-CCchHHHHHHhc------CCcHHHHHHHHHHHhcc
Confidence 3499999999995 44889999999999999999988889999 999999999999 88999999999999999
Q ss_pred ccccchhhhhhccCCcHHHHHHHHhcCCH-HHHHHHHHHHHHhcCCCCchhhhhc-cCChHHHHHHhhhcCHhHHHHHHH
Q 020640 107 SIHDNNKKLVAETPMVIPLLMDALRSGTI-ETRSNAAAALFTLSALDSNKEVIGK-SGALKPLIDLLDEGHQSAMKDVAS 184 (323)
Q Consensus 107 s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~-~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~al~ 184 (323)
+.+....+.++-..|+++.|+.++...+. .....+.|+|.||+.+.+....+.. ..++|.|..++.+.|+.+...|+|
T Consensus 180 agds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~W 259 (514)
T KOG0166|consen 180 AGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACW 259 (514)
T ss_pred ccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99888544444445689999999987765 7888999999999987765555544 678999999999999999999999
Q ss_pred HHHHhccCCc-hhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCH-HHHHHHHhcCCHHHHHHHHhccCChhHH
Q 020640 185 AIFNLCITHE-NKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNH-RAVEEIGDLGGVSCMLRIIRESTCDRNK 260 (323)
Q Consensus 185 aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~ 260 (323)
+|.+|+.+.. .-+.+++.|+++.|+.+|... .++..|++++-|++.+. ...+.+++.|+++.|..++..++.+.++
T Consensus 260 AlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ik 339 (514)
T KOG0166|consen 260 ALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIK 339 (514)
T ss_pred HHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHH
Confidence 9999998775 555568889999999999876 57788999999999975 4555577899999999999965546689
Q ss_pred HHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchh
Q 020640 261 ENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVN 318 (323)
Q Consensus 261 ~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 318 (323)
..|||++.|++.++....+.++ ++|.++.|+++++++.-++|+.|+|++.|++....
T Consensus 340 kEAcW~iSNItAG~~~qiqaVi-da~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~ 396 (514)
T KOG0166|consen 340 KEACWTISNITAGNQEQIQAVI-DANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT 396 (514)
T ss_pred HHHHHHHHHhhcCCHHHHHHHH-HcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC
Confidence 9999999999999988766666 68999999999999999999999999999986543
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.2e-28 Score=213.59 Aligned_cols=275 Identities=16% Similarity=0.243 Sum_probs=248.9
Q ss_pred hHHHHHHHHh-cCCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640 31 DHFLSLLKKM-SATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 109 (323)
Q Consensus 31 ~~i~~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~ 109 (323)
+.+..|+.++ .+..++|+.++.+|.+++.. .+++..+.. .|++.++.++-+ +++..+|.+++.+|.|+...
T Consensus 126 ~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~-sGaL~pltrLak------skdirvqrnatgaLlnmThs 197 (550)
T KOG4224|consen 126 LGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIAR-SGALEPLTRLAK------SKDIRVQRNATGALLNMTHS 197 (550)
T ss_pred cChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhh-ccchhhhHhhcc------cchhhHHHHHHHHHHHhhhh
Confidence 4455566555 46688999999999999976 678999999 999999999666 78999999999999999999
Q ss_pred cchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccC--ChHHHHHHhhhcCHhHHHHHHHHHH
Q 020640 110 DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSG--ALKPLIDLLDEGHQSAMKDVASAIF 187 (323)
Q Consensus 110 ~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g--~i~~Lv~lL~~~~~~~~~~al~aL~ 187 (323)
.++|+.++..|| +|.|+.++++++++++..++.++.+++-...+++.+++.+ .++.|++++++++++++-.|..+|+
T Consensus 198 ~EnRr~LV~aG~-lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALr 276 (550)
T KOG4224|consen 198 RENRRVLVHAGG-LPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALR 276 (550)
T ss_pred hhhhhhhhccCC-chhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHh
Confidence 999999999876 9999999999999999999999999999888999999866 9999999999999999999999999
Q ss_pred HhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHH
Q 020640 188 NLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIA 265 (323)
Q Consensus 188 ~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~ 265 (323)
||+.+.+-...++++|++|.++++|+++ ...-..+.+++|++.+|-+...|++.|.+.+||.+|+.+++++.|-+|..
T Consensus 277 nlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvs 356 (550)
T KOG4224|consen 277 NLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVS 356 (550)
T ss_pred hhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHH
Confidence 9999999999999999999999999987 56677788899999999999999999999999999998887889999999
Q ss_pred HHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640 266 ILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 315 (323)
Q Consensus 266 ~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 315 (323)
+|++|+...+...+ .+.++|.++.|.+++.++...++..-..++..|+=
T Consensus 357 tLrnLAasse~n~~-~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal 405 (550)
T KOG4224|consen 357 TLRNLAASSEHNVS-VIRESGAIPKLIELLLDGPVSVQSEISACIAQLAL 405 (550)
T ss_pred HHHHHhhhhhhhhH-HHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHh
Confidence 99999997755444 44579999999999999999999988888888763
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.1e-28 Score=210.94 Aligned_cols=278 Identities=17% Similarity=0.228 Sum_probs=252.5
Q ss_pred hhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640 28 ADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 106 (323)
Q Consensus 28 ~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l 106 (323)
+..|++..+.++-+ .+..+|..+..+|.+++ ++.++|+.++. .|++|.|+.+++ +.|..+|.+++.++.|+
T Consensus 164 A~sGaL~pltrLakskdirvqrnatgaLlnmT-hs~EnRr~LV~-aG~lpvLVsll~------s~d~dvqyycttaisnI 235 (550)
T KOG4224|consen 164 ARSGALEPLTRLAKSKDIRVQRNATGALLNMT-HSRENRRVLVH-AGGLPVLVSLLK------SGDLDVQYYCTTAISNI 235 (550)
T ss_pred hhccchhhhHhhcccchhhHHHHHHHHHHHhh-hhhhhhhhhhc-cCCchhhhhhhc------cCChhHHHHHHHHhhhh
Confidence 34477777877444 56778999999999999 57899999999 999999999999 77999999999999999
Q ss_pred ccccchhhhhhccC-CcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHH
Q 020640 107 SIHDNNKKLVAETP-MVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASA 185 (323)
Q Consensus 107 s~~~~~~~~i~~~~-g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~a 185 (323)
+.+..+|+.+++.+ .+++.|+.+..+++++++-.|..+|.+|+.+.+....+++.|.+|.++++|+++..........+
T Consensus 236 aVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaC 315 (550)
T KOG4224|consen 236 AVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVAC 315 (550)
T ss_pred hhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHH
Confidence 99888999888853 48999999999999999999999999999999999999999999999999999988888999999
Q ss_pred HHHhccCCchhHHHHhhCchHHHHHHhhcC---chHHHHHHHHHHHhc-CHHHHHHHHhcCCHHHHHHHHhccCChhHHH
Q 020640 186 IFNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKE 261 (323)
Q Consensus 186 L~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~ 261 (323)
++|++.++-|...++++|.+.+|+++|+-+ +.+-.|+.+|+||+. .+.+++.|.+.|+|+.+..++.+++ -.+|+
T Consensus 316 IrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~p-vsvqs 394 (550)
T KOG4224|consen 316 IRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGP-VSVQS 394 (550)
T ss_pred HhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCC-hhHHH
Confidence 999999999999999999999999999865 578899999999999 6899999999999999999999876 88899
Q ss_pred HHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640 262 NCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 316 (323)
Q Consensus 262 ~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 316 (323)
.--.++..|+..+.. +..+.+.|.++.|+.|..+.+.+++.+|+.+|-||+.-
T Consensus 395 eisac~a~Lal~d~~--k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 395 EISACIAQLALNDND--KEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred HHHHHHHHHHhcccc--HHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence 988899999888754 45556899999999999999999999999999999863
No 6
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.8e-27 Score=217.20 Aligned_cols=284 Identities=15% Similarity=0.163 Sum_probs=246.3
Q ss_pred hhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640 29 DRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 107 (323)
Q Consensus 29 ~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls 107 (323)
+.|++|.++.++. .+..+++.|+++|.|++.+++.+|..+.+ .|++++|+.++... ......+.++++|.||+
T Consensus 150 ~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~-~g~l~pLl~~l~~~-----~~~~~lRn~tW~LsNlc 223 (514)
T KOG0166|consen 150 DAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLS-CGALDPLLRLLNKS-----DKLSMLRNATWTLSNLC 223 (514)
T ss_pred cCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHh-hcchHHHHHHhccc-----cchHHHHHHHHHHHHHH
Confidence 3489999999996 66889999999999999999999999999 99999999999842 22478999999999999
Q ss_pred cccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCc-hhhhhccCChHHHHHHhhhcCHhHHHHHHHHH
Q 020640 108 IHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN-KEVIGKSGALKPLIDLLDEGHQSAMKDVASAI 186 (323)
Q Consensus 108 ~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL 186 (323)
.+.+....+.....++|.|..++.+.++++...++|+|.+|+.+++. -..+++.|+++.|+++|...+..++..|++++
T Consensus 224 rgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRai 303 (514)
T KOG0166|consen 224 RGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAI 303 (514)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhc
Confidence 98865554444344799999999999999999999999999966654 45556799999999999999999999999999
Q ss_pred HHhccCCchhHH-HHhhCchHHHHHHhhcC---chHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhccCChhHHH
Q 020640 187 FNLCITHENKAR-AVRDGGVSVILKKIMDG---VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKE 261 (323)
Q Consensus 187 ~~L~~~~~~~~~-i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~ 261 (323)
.|++.+++...+ ++..|+++.|..++... .+++.|+|++.|++.+ ++..+.++++|.+|.|+.+++.++ .++|.
T Consensus 304 GNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~e-f~~rK 382 (514)
T KOG0166|consen 304 GNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAE-FDIRK 382 (514)
T ss_pred cceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccc-hHHHH
Confidence 999998876665 57889999999999843 5789999999999995 789999999999999999999776 88999
Q ss_pred HHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchhh
Q 020640 262 NCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVNL 319 (323)
Q Consensus 262 ~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~ 319 (323)
.|+|++.|++.......-..+.+.|++++|..++...+.++...+..+|+++.+....
T Consensus 383 EAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~ 440 (514)
T KOG0166|consen 383 EAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEA 440 (514)
T ss_pred HHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHH
Confidence 9999999999866543334455789999999999888999999999999999887654
No 7
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.94 E-value=8.8e-26 Score=194.28 Aligned_cols=278 Identities=15% Similarity=0.112 Sum_probs=235.9
Q ss_pred hhhhHHHHHHHHhc-CC-chhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHH
Q 020640 28 ADRDHFLSLLKKMS-AT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN 105 (323)
Q Consensus 28 ~~~~~i~~Lv~~l~-~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ 105 (323)
.+.|++|++|+++. .. ...+.+|.++|.|++.+...-.+.+++ +|++|.++++|. +.+.++++.++++|.|
T Consensus 111 IdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd-~~AVPlfiqlL~------s~~~~V~eQavWALGN 183 (526)
T COG5064 111 IDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVD-AGAVPLFIQLLS------STEDDVREQAVWALGN 183 (526)
T ss_pred HhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEe-CCchHHHHHHHc------CchHHHHHHHHHHhcc
Confidence 56699999999995 32 445889999999999887766677889 999999999999 7788999999999999
Q ss_pred hccccc-hhhhhhccCCcHHHHHHHHhcC--CHHHHHHHHHHHHHhcCCCCc--hhhhhccCChHHHHHHhhhcCHhHHH
Q 020640 106 LSIHDN-NKKLVAETPMVIPLLMDALRSG--TIETRSNAAAALFTLSALDSN--KEVIGKSGALKPLIDLLDEGHQSAMK 180 (323)
Q Consensus 106 ls~~~~-~~~~i~~~~g~i~~Lv~ll~~~--~~~~~~~a~~~L~~L~~~~~~--~~~i~~~g~i~~Lv~lL~~~~~~~~~ 180 (323)
++.+.+ +|.-+.+. |+++.++.++.+. +......+.|+|.||+...+. -..-+ ..++|.|.+++.+.++++..
T Consensus 184 iAGDS~~~RD~vL~~-galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i-sqalpiL~KLiys~D~evlv 261 (526)
T COG5064 184 IAGDSEGCRDYVLQC-GALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI-SQALPILAKLIYSRDPEVLV 261 (526)
T ss_pred ccCCchhHHHHHHhc-CchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH-HHHHHHHHHHHhhcCHHHHH
Confidence 999888 56666665 5899999999876 457888999999999965432 22222 33799999999999999999
Q ss_pred HHHHHHHHhccCCchh-HHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHH-HHHhcCCHHHHHHHHhccCC
Q 020640 181 DVASAIFNLCITHENK-ARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVE-EIGDLGGVSCMLRIIRESTC 256 (323)
Q Consensus 181 ~al~aL~~L~~~~~~~-~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~-~i~~~g~i~~Lv~ll~~~~~ 256 (323)
.|+|++..|+..+..+ ..+++.|..+.|+++|.++ .++..+++.+.|+....+.+. .+++.|+++.+-.+|.+..
T Consensus 262 DA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~k- 340 (526)
T COG5064 262 DACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPK- 340 (526)
T ss_pred HHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChh-
Confidence 9999999999988544 5567889999999999976 678889999999999765555 4678899999999999665
Q ss_pred hhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640 257 DRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 316 (323)
Q Consensus 257 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 316 (323)
+.++..|||++.|++..+.+..+.++ +++.+|+|++++.+-.=.+++.|+|++.|....
T Consensus 341 e~irKEaCWTiSNITAGnteqiqavi-d~nliPpLi~lls~ae~k~kKEACWAisNatsg 399 (526)
T COG5064 341 ENIRKEACWTISNITAGNTEQIQAVI-DANLIPPLIHLLSSAEYKIKKEACWAISNATSG 399 (526)
T ss_pred hhhhhhhheeecccccCCHHHHHHHH-hcccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 78999999999999999987665555 799999999999999999999999999998754
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.93 E-value=3.6e-25 Score=190.53 Aligned_cols=281 Identities=13% Similarity=0.121 Sum_probs=240.6
Q ss_pred hhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640 28 ADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 106 (323)
Q Consensus 28 ~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l 106 (323)
-+.|++|.++.+|. .+.+++.+++++|.|++.+++.+|..+.+ .|++++++.+|.+. ..+....+.+.++|.||
T Consensus 154 vd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~-~galeplL~ll~ss----~~~ismlRn~TWtLSNl 228 (526)
T COG5064 154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQ-CGALEPLLGLLLSS----AIHISMLRNATWTLSNL 228 (526)
T ss_pred EeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHh-cCchHHHHHHHHhc----cchHHHHHHhHHHHHHh
Confidence 45699999999996 56889999999999999999999999999 99999999999843 33568999999999999
Q ss_pred ccccc---hhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCc-hhhhhccCChHHHHHHhhhcCHhHHHHH
Q 020640 107 SIHDN---NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN-KEVIGKSGALKPLIDLLDEGHQSAMKDV 182 (323)
Q Consensus 107 s~~~~---~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~a 182 (323)
+.... +-..+.. ++|.|.+++.+.++++...|+|++..|+..+.. ...+.+.|+...|+++|.+++..++..+
T Consensus 229 cRGknP~P~w~~isq---alpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPa 305 (526)
T COG5064 229 CRGKNPPPDWSNISQ---ALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPA 305 (526)
T ss_pred hCCCCCCCchHHHHH---HHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHH
Confidence 97654 2333433 589999999999999999999999999976654 4555679999999999999999999999
Q ss_pred HHHHHHhccCCchhHH-HHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhccCChh
Q 020640 183 ASAIFNLCITHENKAR-AVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDR 258 (323)
Q Consensus 183 l~aL~~L~~~~~~~~~-i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~ 258 (323)
++.+.|+..+++.... +++.|+++.+-.+|.++ .+++.+||.+.|+... .+..+.+++.+.+|.|+++|...+ -+
T Consensus 306 lR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae-~k 384 (526)
T COG5064 306 LRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAE-YK 384 (526)
T ss_pred HHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHH-HH
Confidence 9999999888766555 57889999999999876 7899999999999985 688889999999999999999765 88
Q ss_pred HHHHHHHHHHHhcccC---hHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchh
Q 020640 259 NKENCIAILHTICLSD---RTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVN 318 (323)
Q Consensus 259 ~~~~a~~~L~~L~~~~---~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 318 (323)
.+..|||++.|.+++. |+..+.++ +.|+|.+|..++...+.++-+-|..+++++.+...
T Consensus 385 ~kKEACWAisNatsgg~~~PD~iryLv-~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge 446 (526)
T COG5064 385 IKKEACWAISNATSGGLNRPDIIRYLV-SQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGE 446 (526)
T ss_pred HHHHHHHHHHhhhccccCCchHHHHHH-HccchhHHHHHHhccCccchhhhHHHHHHHHhhhh
Confidence 9999999999998765 45555554 68999999999998887788888888888776443
No 9
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.89 E-value=5.3e-22 Score=195.28 Aligned_cols=269 Identities=19% Similarity=0.170 Sum_probs=233.7
Q ss_pred HHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhccccc------CCCCCHHHHHHHHHHHHHhccccc-hhhhhhcc
Q 020640 47 QTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKC------ENGINPNLQEDVITTLLNLSIHDN-NKKLVAET 119 (323)
Q Consensus 47 ~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~------~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~ 119 (323)
.+.|+..|++++ .++++|+.+.+ .|++..+-++|.-... .+.....++.+|..+|.||.+.+. |+..++..
T Consensus 315 lcaA~~~lMK~S-FDEEhR~aM~E-LG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~ 392 (2195)
T KOG2122|consen 315 LCAALCTLMKLS-FDEEHRHAMNE-LGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQ 392 (2195)
T ss_pred hHHHHHHHHHhh-ccHHHHHHHHH-hhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhh
Confidence 448999999999 68999999999 9999999988852110 113346799999999999999888 78899988
Q ss_pred CCcHHHHHHHHhcCCHHHHHHHHHHHHHhc-CCCCc-hhhhhccCChHHHHHH-hhhcCHhHHHHHHHHHHHhccCC-ch
Q 020640 120 PMVIPLLMDALRSGTIETRSNAAAALFTLS-ALDSN-KEVIGKSGALKPLIDL-LDEGHQSAMKDVASAIFNLCITH-EN 195 (323)
Q Consensus 120 ~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~-~~~~~-~~~i~~~g~i~~Lv~l-L~~~~~~~~~~al~aL~~L~~~~-~~ 195 (323)
.|+++.+|..|.+..+++..-.+.+|+||+ .-+.| ++.+.+.|-+..|+.. ++.......+..+.+||||+.+. +|
T Consensus 393 rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteN 472 (2195)
T KOG2122|consen 393 RGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTEN 472 (2195)
T ss_pred hhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhccccc
Confidence 899999999999999999999999999998 44555 5555569999999986 55567789999999999999876 89
Q ss_pred hHHHHhh-CchHHHHHHhhcC------chHHHHHHHHHHHhc----CHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHH
Q 020640 196 KARAVRD-GGVSVILKKIMDG------VHVDELLAILAMLST----NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCI 264 (323)
Q Consensus 196 ~~~i~~~-g~v~~Lv~ll~~~------~~~~~a~~~L~~l~~----~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~ 264 (323)
+..|... |++..|+.+|.-. .+.+.+-+||.|+++ +++.|+.+.++.+++.|+++|++. +-.+..++|
T Consensus 473 KA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~-SLTiVSNaC 551 (2195)
T KOG2122|consen 473 KAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH-SLTIVSNAC 551 (2195)
T ss_pred chhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc-ceEEeecch
Confidence 9999986 9999999999843 578999999999877 589999999999999999999954 488999999
Q ss_pred HHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchhh
Q 020640 265 AILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVNL 319 (323)
Q Consensus 265 ~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~ 319 (323)
++||||+..++. -++++.+.|.++.|.+++++.+..+-.-++.+|+||..|.+.
T Consensus 552 GTLWNLSAR~p~-DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RPA 605 (2195)
T KOG2122|consen 552 GTLWNLSARSPE-DQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRPA 605 (2195)
T ss_pred hhhhhhhcCCHH-HHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCch
Confidence 999999999976 568888999999999999999999999999999999988754
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.89 E-value=9.6e-21 Score=183.01 Aligned_cols=284 Identities=18% Similarity=0.203 Sum_probs=239.8
Q ss_pred hhhhHHHHHHHHhcCCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhccccc--------------------
Q 020640 28 ADRDHFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKC-------------------- 87 (323)
Q Consensus 28 ~~~~~i~~Lv~~l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~-------------------- 87 (323)
+.-+-+...++++-++...+.++...|..+++ +++|-..+..+.-.+..|.+.|++.-.
T Consensus 120 a~~~~~d~yiE~lYe~~~ek~~~~~~il~La~-~~~NL~~l~~ne~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS~f~ 198 (708)
T PF05804_consen 120 ASINDLDEYIELLYEDIPEKIRGTSLILQLAR-NPENLEELVQNETLMSALARVLREDWKKSVELATNIIYIFFCFSNFS 198 (708)
T ss_pred CCHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-CcchHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHH
Confidence 34567888999997777778999999999996 566777766647788999999965111
Q ss_pred ---------------------C-----------------CC---------------------CCHHHHHHHHHHHHHhcc
Q 020640 88 ---------------------E-----------------NG---------------------INPNLQEDVITTLLNLSI 108 (323)
Q Consensus 88 ---------------------~-----------------~~---------------------~~~~~~~~a~~~L~~ls~ 108 (323)
| .+ ....+...+..+|.|+|.
T Consensus 199 ~fH~~l~~~kiG~l~m~iie~Elkr~~~w~~~l~~~~~~~~~~~~~~~~~~~~~kk~~~l~~kQeqLlrv~~~lLlNLAe 278 (708)
T PF05804_consen 199 QFHPILAHYKIGSLCMEIIEHELKRHDLWQEELRKKKKAAEEKPEAKKDYEKELKKLQTLIRKQEQLLRVAFYLLLNLAE 278 (708)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 00 012345567778999999
Q ss_pred ccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHH
Q 020640 109 HDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFN 188 (323)
Q Consensus 109 ~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~ 188 (323)
+......+.+.+ +++.|+.+|.+++.+....+.++|.+|+.+.+|+..+.+.|+++.|++++.+++..+...++++|+|
T Consensus 279 d~~ve~kM~~~~-iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~N 357 (708)
T PF05804_consen 279 DPRVELKMVNKG-IVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFN 357 (708)
T ss_pred ChHHHHHHHhcC-CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 998999999865 7999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCchhHHHHhhCchHHHHHHhhcCchHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHH
Q 020640 189 LCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILH 268 (323)
Q Consensus 189 L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~ 268 (323)
||.+++.|..+++.|++|.|+.+|.++..+..++.+|.++|.++++|..|...++++.+++++..++++.++..++.++.
T Consensus 358 LSfd~~~R~~mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~i 437 (708)
T PF05804_consen 358 LSFDPELRSQMVSLGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLI 437 (708)
T ss_pred hCcCHHHHHHHHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHH
Confidence 99999999999999999999999999888888999999999999999999999999999999877665777888899999
Q ss_pred HhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchh
Q 020640 269 TICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVN 318 (323)
Q Consensus 269 ~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 318 (323)
||+.+... . +++-+.++++.|++......+.. -..+++|++.|.+
T Consensus 438 NLa~~~rn-a-qlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~ 482 (708)
T PF05804_consen 438 NLALNKRN-A-QLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHDG 482 (708)
T ss_pred HHhcCHHH-H-HHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcCc
Confidence 99998754 3 45456789999999887664322 3458999998873
No 11
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.88 E-value=2.3e-20 Score=180.34 Aligned_cols=264 Identities=20% Similarity=0.221 Sum_probs=226.3
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchh
Q 020640 34 LSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNK 113 (323)
Q Consensus 34 ~~Lv~~l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~ 113 (323)
+.+-.++..+......+...|.|++. ++.....+.+ .|+++.|+++|+ +++.++...++.+|.+||...+|+
T Consensus 253 kk~~~l~~kQeqLlrv~~~lLlNLAe-d~~ve~kM~~-~~iV~~Lv~~Ld------r~n~ellil~v~fLkkLSi~~ENK 324 (708)
T PF05804_consen 253 KKLQTLIRKQEQLLRVAFYLLLNLAE-DPRVELKMVN-KGIVSLLVKCLD------RENEELLILAVTFLKKLSIFKENK 324 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHh-cCCHHHHHHHHc------CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 44444444444555678889999995 7788899999 999999999999 678999999999999999999999
Q ss_pred hhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCC
Q 020640 114 KLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITH 193 (323)
Q Consensus 114 ~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~ 193 (323)
..+.+. |+++.|++++++++.+.+..++++|+||+.+++.+..+++.|++|.|+.+|.++ ..+..++.+|++||.++
T Consensus 325 ~~m~~~-giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd 401 (708)
T PF05804_consen 325 DEMAES-GIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDD 401 (708)
T ss_pred HHHHHc-CCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCH
Confidence 999986 589999999999999999999999999999999999999999999999999865 46677999999999999
Q ss_pred chhHHHHhhCchHHHHHHhhcC---chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHh
Q 020640 194 ENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTI 270 (323)
Q Consensus 194 ~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L 270 (323)
+.|..+...++++.+++++-++ .+....+.++.|+|.++.+.+.+.+.|+++.|++...... +.+ .+..+.|+
T Consensus 402 ~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~-D~l---LlKlIRNi 477 (708)
T PF05804_consen 402 EARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTR-DPL---LLKLIRNI 477 (708)
T ss_pred hhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcc-cHH---HHHHHHHH
Confidence 9999998889999999987754 4566688999999999999999999899999997776444 333 44799999
Q ss_pred cccChHhHHHHHhhcccHHHHHHHhhcC-CHHHHHHHHHHHHHHhc
Q 020640 271 CLSDRTKWKAMREEESTHGTISKLAQDG-TARAKRKATGILERLKR 315 (323)
Q Consensus 271 ~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~A~~~L~~l~~ 315 (323)
+.+++. .+..+ .+++..|+.++..+ +++..-.+.++|.||.-
T Consensus 478 S~h~~~-~k~~f--~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~ 520 (708)
T PF05804_consen 478 SQHDGP-LKELF--VDFIGDLAKIVSSGDSEEFVVECLGILANLTI 520 (708)
T ss_pred HhcCch-HHHHH--HHHHHHHHHHhhcCCcHHHHHHHHHHHHhccc
Confidence 999854 34554 36999999998876 88899999999999974
No 12
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=9.3e-18 Score=144.78 Aligned_cols=283 Identities=17% Similarity=0.243 Sum_probs=238.2
Q ss_pred hhhhHHHHHHHHhc---CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHH
Q 020640 28 ADRDHFLSLLKKMS---ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLL 104 (323)
Q Consensus 28 ~~~~~i~~Lv~~l~---~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~ 104 (323)
.+...+..++++|. ++.+.....+..++..|..++.+|..|++ .++.+.+...|.+. +.+ .+.+.++++++
T Consensus 142 ~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~-~~il~Li~~~l~~~----gk~-~~VRel~~a~r 215 (461)
T KOG4199|consen 142 FDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFME-LKILELILQVLNRE----GKT-RTVRELYDAIR 215 (461)
T ss_pred hccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHH-hhHHHHHHHHHccc----Ccc-HHHHHHHHHHH
Confidence 45567888889884 55778888999999999999999999999 99999999888754 233 67788889999
Q ss_pred Hhccccchh----------hhhhccCCcHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhh
Q 020640 105 NLSIHDNNK----------KLVAETPMVIPLLMDALRSG-TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE 173 (323)
Q Consensus 105 ~ls~~~~~~----------~~i~~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~ 173 (323)
.|..+++-| +.|.+.+ ....|+..++-. ++......+.+|..|+..++.+..+.+.|++..|+.++.+
T Consensus 216 ~l~~dDDiRV~fg~ah~hAr~ia~e~-~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d 294 (461)
T KOG4199|consen 216 ALLTDDDIRVVFGQAHGHARTIAKEG-ILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDD 294 (461)
T ss_pred HhcCCCceeeecchhhHHHHHHHHhh-hHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 988777644 3555554 477888888764 7899999999999999999999999999999999999987
Q ss_pred c----CHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhc----CchHHHHHHHHHHHhc-CHHHHHHHHhcCCH
Q 020640 174 G----HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMD----GVHVDELLAILAMLST-NHRAVEEIGDLGGV 244 (323)
Q Consensus 174 ~----~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~----~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i 244 (323)
. .....+.++..|+.|+.+++++..|++.|+.+.++.++.. +.+.+.++.+++-||. .|++-..+++.|+-
T Consensus 295 ~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a 374 (461)
T KOG4199|consen 295 SNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAA 374 (461)
T ss_pred hchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchH
Confidence 3 3346678999999999999999999999999999998753 2578888999999998 58999999999999
Q ss_pred HHHHHHHhccC-ChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchhh
Q 020640 245 SCMLRIIREST-CDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVNL 319 (323)
Q Consensus 245 ~~Lv~ll~~~~-~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~ 319 (323)
...++.|+..+ ...+|++||+.+.|+..++.+.+..++ +.+++.|+......++.....|..+|+-|..+...
T Consensus 375 ~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l--~~GiE~Li~~A~~~h~tce~~akaALRDLGc~v~l 448 (461)
T KOG4199|consen 375 DLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILL--ANGIEKLIRTAKANHETCEAAAKAALRDLGCDVYL 448 (461)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHH--hccHHHHHHHHHhcCccHHHHHHHHHHhcCcchhh
Confidence 99999998643 255899999999999999876544444 68999999999999999999999999999875443
No 13
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=1.2e-17 Score=144.18 Aligned_cols=264 Identities=18% Similarity=0.255 Sum_probs=216.7
Q ss_pred HHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccc-hhhhhhccCCcHHH
Q 020640 47 QTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN-NKKLVAETPMVIPL 125 (323)
Q Consensus 47 ~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~g~i~~ 125 (323)
..+++.+|..+..+.| .+.+ +.++..++.+|... .++.++.-.....+..-+...+ +|..+++.+ +.+.
T Consensus 124 l~ksL~al~~lt~~qp----dl~d-a~g~~vvv~lL~~~----~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~-il~L 193 (461)
T KOG4199|consen 124 LKKSLEAINSLTHKQP----DLFD-AEAMAVVLKLLALK----VESEEVTLLTLQWLQKACIMHEVNRQLFMELK-ILEL 193 (461)
T ss_pred HHHHHHHHHHhhcCCc----chhc-cccHHHHHHHHhcc----cchHHHHHHHHHHHHHHHHHhHHHHHHHHHhh-HHHH
Confidence 4456666666665443 4567 88899999999755 5677888888888887666555 899999965 7888
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHhcCCCCc----------hhhhhccCChHHHHHHhhhc-CHhHHHHHHHHHHHhccCC
Q 020640 126 LMDALRS-GTIETRSNAAAALFTLSALDSN----------KEVIGKSGALKPLIDLLDEG-HQSAMKDVASAIFNLCITH 193 (323)
Q Consensus 126 Lv~ll~~-~~~~~~~~a~~~L~~L~~~~~~----------~~~i~~~g~i~~Lv~lL~~~-~~~~~~~al~aL~~L~~~~ 193 (323)
+...|.. +..++....+++++.|...++. ...+...|++..|++.+..+ ++.+....+.+|..|+..+
T Consensus 194 i~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~ 273 (461)
T KOG4199|consen 194 ILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRD 273 (461)
T ss_pred HHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHH
Confidence 8867654 4557999999999999887763 45667788999999999985 7889999999999999999
Q ss_pred chhHHHHhhCchHHHHHHhhcC------chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHh-ccCChhHHHHHHHH
Q 020640 194 ENKARAVRDGGVSVILKKIMDG------VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIR-ESTCDRNKENCIAI 266 (323)
Q Consensus 194 ~~~~~i~~~g~v~~Lv~ll~~~------~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~-~~~~~~~~~~a~~~ 266 (323)
+.+..+.+.||+..|++++.+. ++.+.++..|+.|+.+++++..|++.|+.+.++.++. ..+++.+.+.++.+
T Consensus 274 E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~ 353 (461)
T KOG4199|consen 274 EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAI 353 (461)
T ss_pred HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHH
Confidence 9999999999999999999974 3568899999999999999999999999999998775 45568899999999
Q ss_pred HHHhcccChHhHHHHHhhcccHHHHHHHhhcC--CHHHHHHHHHHHHHHhcchhhcc
Q 020640 267 LHTICLSDRTKWKAMREEESTHGTISKLAQDG--TARAKRKATGILERLKRTVNLTH 321 (323)
Q Consensus 267 L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~A~~~L~~l~~~~~~~~ 321 (323)
+.-||-..|++.+.++ +.|+-...++-++.- ...+|++|+++++|+......+.
T Consensus 354 i~~l~LR~pdhsa~~i-e~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~ 409 (461)
T KOG4199|consen 354 ISILCLRSPDHSAKAI-EAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENR 409 (461)
T ss_pred HHHHHhcCcchHHHHH-hcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 9999999998766666 577777777766543 78899999999999987665544
No 14
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.78 E-value=1.5e-17 Score=157.89 Aligned_cols=278 Identities=22% Similarity=0.221 Sum_probs=226.3
Q ss_pred hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640 31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 109 (323)
Q Consensus 31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~ 109 (323)
-.+|+.+.+|. .++.+|-.|...+..+|..+.+.+..+.+ .|+|+.|+.+|+ +.+.+++..|+.+|.||.+.
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrq-lggI~kLv~Ll~------~~~~evq~~acgaLRNLvf~ 305 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQ-LGGIPKLVALLD------HRNDEVQRQACGALRNLVFG 305 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHH-hccHHHHHHHhc------CCcHHHHHHHHHHHHhhhcc
Confidence 46788899996 66889999999999999999888998999 999999999999 78999999999999999875
Q ss_pred cc---hhhhhhccCCcHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhc-----------
Q 020640 110 DN---NKKLVAETPMVIPLLMDALRS-GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEG----------- 174 (323)
Q Consensus 110 ~~---~~~~i~~~~g~i~~Lv~ll~~-~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~----------- 174 (323)
.+ |+..|.+.+| ++.++++|+. .+.++++...++||||+.++..+..++.. +++.|..-+-.+
T Consensus 306 ~~~~~NKlai~~~~G-v~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~ 383 (717)
T KOG1048|consen 306 KSTDSNKLAIKELNG-VPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPR 383 (717)
T ss_pred cCCcccchhhhhcCC-hHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCccc
Confidence 54 6888888887 8999999986 69999999999999999998778777765 577776654321
Q ss_pred ---CHhHHHHHHHHHHHhcc-CCchhHHHHhh-CchHHHHHHhhc--------CchHHHHHHHHHHHhcCHH--------
Q 020640 175 ---HQSAMKDVASAIFNLCI-THENKARAVRD-GGVSVILKKIMD--------GVHVDELLAILAMLSTNHR-------- 233 (323)
Q Consensus 175 ---~~~~~~~al~aL~~L~~-~~~~~~~i~~~-g~v~~Lv~ll~~--------~~~~~~a~~~L~~l~~~~~-------- 233 (323)
+..+..++.++|+|++. +.+.|.++-+. |.|..|+..++. ....++|+.+|.|++-.-+
T Consensus 384 ~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~ 463 (717)
T KOG1048|consen 384 KAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYR 463 (717)
T ss_pred ccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhh
Confidence 25678899999999988 55788888775 999999998873 2568999999999975210
Q ss_pred ------------------------HHHH----------------------HHhcCCHHHHHHHHhccCChhHHHHHHHHH
Q 020640 234 ------------------------AVEE----------------------IGDLGGVSCMLRIIRESTCDRNKENCIAIL 267 (323)
Q Consensus 234 ------------------------~~~~----------------------i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L 267 (323)
.++. ++...+|.....++..+.++.+.++++++|
T Consensus 464 ~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaL 543 (717)
T KOG1048|consen 464 QVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGAL 543 (717)
T ss_pred hHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhH
Confidence 0111 111124556566676666688999999999
Q ss_pred HHhcccCh----HhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 020640 268 HTICLSDR----TKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 317 (323)
Q Consensus 268 ~~L~~~~~----~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 317 (323)
.||+.... ..+..++....+.+.|+++++.+++.+.+.++.+|+||+...
T Consensus 544 QNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~ 597 (717)
T KOG1048|consen 544 QNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI 597 (717)
T ss_pred hhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc
Confidence 99998764 234455578899999999999999999999999999998654
No 15
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.72 E-value=1.2e-15 Score=145.10 Aligned_cols=286 Identities=17% Similarity=0.172 Sum_probs=222.2
Q ss_pred hhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChh--hHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHH
Q 020640 29 DRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPS--FRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN 105 (323)
Q Consensus 29 ~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~--~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ 105 (323)
..+.|+.||.+|. ...+++..|+.+|+|+..++.. ++-.+.+ .++|+.++++|++ ..|.++++..+.+|+|
T Consensus 273 qlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~-~~Gv~~l~~~Lr~-----t~D~ev~e~iTg~LWN 346 (717)
T KOG1048|consen 273 QLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKE-LNGVPTLVRLLRH-----TQDDEVRELITGILWN 346 (717)
T ss_pred HhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhh-cCChHHHHHHHHh-----hcchHHHHHHHHHHhc
Confidence 3477889999996 6689999999999999987776 8888999 9999999999985 2355566666666666
Q ss_pred hc------------------------------------------------------c-ccchhhhhhccCCcHHHHHHHH
Q 020640 106 LS------------------------------------------------------I-HDNNKKLVAETPMVIPLLMDAL 130 (323)
Q Consensus 106 ls------------------------------------------------------~-~~~~~~~i~~~~g~i~~Lv~ll 130 (323)
|+ . ..+.|+++.+..|.|..|+..+
T Consensus 347 LSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~i 426 (717)
T KOG1048|consen 347 LSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSI 426 (717)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHH
Confidence 54 2 2345777778788899998887
Q ss_pred hc------CCHHHHHHHHHHHHHhcCCCC--------------------------------chhh---------------
Q 020640 131 RS------GTIETRSNAAAALFTLSALDS--------------------------------NKEV--------------- 157 (323)
Q Consensus 131 ~~------~~~~~~~~a~~~L~~L~~~~~--------------------------------~~~~--------------- 157 (323)
++ .+....++|..+|+||+-.-+ -+.+
T Consensus 427 q~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~ 506 (717)
T KOG1048|consen 427 QTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERAT 506 (717)
T ss_pred HHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCccccc
Confidence 52 367889999999999973211 0001
Q ss_pred -------hhccCChHHHHHHhhh-cCHhHHHHHHHHHHHhccCCc-----hhHHH-HhhCchHHHHHHhhcC--chHHHH
Q 020640 158 -------IGKSGALKPLIDLLDE-GHQSAMKDVASAIFNLCITHE-----NKARA-VRDGGVSVILKKIMDG--VHVDEL 221 (323)
Q Consensus 158 -------i~~~g~i~~Lv~lL~~-~~~~~~~~al~aL~~L~~~~~-----~~~~i-~~~g~v~~Lv~ll~~~--~~~~~a 221 (323)
+...-++..-+.+|.. .+..+.+.++++|.||+.+.- .+..+ ..+.+.++|+++|..+ .+...+
T Consensus 507 ~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~ 586 (717)
T KOG1048|consen 507 APKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSA 586 (717)
T ss_pred CCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHH
Confidence 1112233333344443 477899999999999988663 34444 4568999999999976 789999
Q ss_pred HHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCC-----hhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhh
Q 020640 222 LAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTC-----DRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQ 296 (323)
Q Consensus 222 ~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~-----~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~ 296 (323)
+++|.||+.+..+++.|. .++++.|++.|..+.. +++...++.+|+++...+....+.++ +.++++.|+.+..
T Consensus 587 a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~-~~~g~~kL~~I~~ 664 (717)
T KOG1048|consen 587 AGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLL-EIKGIPKLRLISK 664 (717)
T ss_pred HHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHH-hccChHHHHHHhc
Confidence 999999999999999988 6789999999987543 67888999999999988887767776 6899999999998
Q ss_pred cC-CHHHHHHHHHHHHHHhcchhhccC
Q 020640 297 DG-TARAKRKATGILERLKRTVNLTHT 322 (323)
Q Consensus 297 ~~-~~~~~~~A~~~L~~l~~~~~~~~~ 322 (323)
+. +++.-+.|...|..|-.|-.+.|.
T Consensus 665 s~~S~k~~kaAs~vL~~lW~y~eLh~~ 691 (717)
T KOG1048|consen 665 SQHSPKEFKAASSVLDVLWQYKELHFK 691 (717)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 87 789999999999998877766653
No 16
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.72 E-value=1.3e-15 Score=131.54 Aligned_cols=227 Identities=19% Similarity=0.192 Sum_probs=188.0
Q ss_pred hhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 020640 69 GESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTL 148 (323)
Q Consensus 69 ~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L 148 (323)
.+ .+-++.|+.+|+. ++||.+++.++.++.+.+..+.++..+.+.|| ++.+..++.++++.+++.|+++|.|+
T Consensus 9 l~-~~~l~~Ll~lL~~-----t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Gg-i~lI~~lL~~p~~~vr~~AL~aL~Nl 81 (254)
T PF04826_consen 9 LE-AQELQKLLCLLES-----TEDPFIQEKALIALGNSAAFPFNQDIIRDLGG-ISLIGSLLNDPNPSVREKALNALNNL 81 (254)
T ss_pred cC-HHHHHHHHHHHhc-----CCChHHHHHHHHHHHhhccChhHHHHHHHcCC-HHHHHHHcCCCChHHHHHHHHHHHhc
Confidence 45 6778999999985 56899999999999999999999999999875 99999999999999999999999999
Q ss_pred cCCCCchhhhhccCChHHHHHHhhhc--CHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHH
Q 020640 149 SALDSNKEVIGKSGALKPLIDLLDEG--HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAI 224 (323)
Q Consensus 149 ~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~ 224 (323)
+...+|+..+-. .++.+++.+.+. +..++..++++|.||+..++.+..+. +.++.++.+|.+| ..+..++.+
T Consensus 82 s~~~en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~ 157 (254)
T PF04826_consen 82 SVNDENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKV 157 (254)
T ss_pred CCChhhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHH
Confidence 999999888754 477777765553 67889999999999998887766664 4799999999987 578899999
Q ss_pred HHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChH-------------hHHHHHhhcc-cHHH
Q 020640 225 LAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT-------------KWKAMREEES-THGT 290 (323)
Q Consensus 225 L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~-------------~~~~~~~~~~-~i~~ 290 (323)
|.||+.+++..+.++..++++.++.++..+.+......++..+.|+..+-.. ..-.++.+.+ +.+.
T Consensus 158 L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~ 237 (254)
T PF04826_consen 158 LVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKK 237 (254)
T ss_pred HHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHH
Confidence 9999999999999999999999999998765577889999999999543321 1112333333 6777
Q ss_pred HHHHhhcCCHHHHHHH
Q 020640 291 ISKLAQDGTARAKRKA 306 (323)
Q Consensus 291 L~~ll~~~~~~~~~~A 306 (323)
|..+..+.++++|++.
T Consensus 238 l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 238 LQALANHPDPEVKEQV 253 (254)
T ss_pred HHHHHcCCCHHHhhhc
Confidence 7777777888887763
No 17
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.69 E-value=6.3e-16 Score=153.19 Aligned_cols=243 Identities=19% Similarity=0.150 Sum_probs=201.2
Q ss_pred hhhhHHHHHHHHhcC----------C---chhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHH
Q 020640 28 ADRDHFLSLLKKMSA----------T---LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPN 94 (323)
Q Consensus 28 ~~~~~i~~Lv~~l~~----------~---~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~ 94 (323)
++-|.++.+-+++.- + ...|.=|.++|.||+-++..|+..+....|+++.+|..|. +...+
T Consensus 336 ~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~------s~pee 409 (2195)
T KOG2122|consen 336 NELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLI------SAPEE 409 (2195)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHh------cChHH
Confidence 556667666666631 1 1246779999999999999999888877999999999999 56678
Q ss_pred HHHHHHHHHHHhccccc-hhhhhhccCCcHHHHHHH-HhcCCHHHHHHHHHHHHHhcCC-CCchhhhhc-cCChHHHHHH
Q 020640 95 LQEDVITTLLNLSIHDN-NKKLVAETPMVIPLLMDA-LRSGTIETRSNAAAALFTLSAL-DSNKEVIGK-SGALKPLIDL 170 (323)
Q Consensus 95 ~~~~a~~~L~~ls~~~~-~~~~i~~~~g~i~~Lv~l-l~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~-~g~i~~Lv~l 170 (323)
+....+.+|+||++..| +.+.+...-|.+..|+.. ++...+.+.+..+.+||||+.+ .+||..|.. .|++..||.+
T Consensus 410 L~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~ 489 (2195)
T KOG2122|consen 410 LLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGT 489 (2195)
T ss_pred HHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhh
Confidence 99999999999999888 555555544567777665 4556778899999999999866 579999988 9999999999
Q ss_pred hhhc----CHhHHHHHHHHHHHhccC----CchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc-CHHHHHHHH
Q 020640 171 LDEG----HQSAMKDVASAIFNLCIT----HENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIG 239 (323)
Q Consensus 171 L~~~----~~~~~~~al~aL~~L~~~----~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~-~~~~~~~i~ 239 (323)
|.-+ .-.+.+.+-++|+|.+.. .+.|+.+.+.+.+..|+..|++. ++..++|++||||+. +++.++.++
T Consensus 490 LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~Lw 569 (2195)
T KOG2122|consen 490 LSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLW 569 (2195)
T ss_pred ccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHH
Confidence 9753 567888999999998653 34566667789999999999987 789999999999988 799999999
Q ss_pred hcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHh
Q 020640 240 DLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTK 277 (323)
Q Consensus 240 ~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~ 277 (323)
+.|+++.|..++.+.+ ..+-+-++.+|.||..+.+.+
T Consensus 570 D~gAv~mLrnLIhSKh-kMIa~GSaaALrNLln~RPAk 606 (2195)
T KOG2122|consen 570 DDGAVPMLRNLIHSKH-KMIAMGSAAALRNLLNFRPAK 606 (2195)
T ss_pred hcccHHHHHHHHhhhh-hhhhhhHHHHHHHHhcCCchh
Confidence 9999999999999766 888999999999999988654
No 18
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.67 E-value=2e-14 Score=124.23 Aligned_cols=190 Identities=18% Similarity=0.238 Sum_probs=165.6
Q ss_pred hhhHHHHHHHHhc--CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640 29 DRDHFLSLLKKMS--ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 106 (323)
Q Consensus 29 ~~~~i~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l 106 (323)
+.+.++.|+..|+ +|+.++..|+.++.+.+. .+.++..+.+ .|+++.+.++|. ++++.+++.|+.+|.|+
T Consensus 10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~-~Ggi~lI~~lL~------~p~~~vr~~AL~aL~Nl 81 (254)
T PF04826_consen 10 EAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRD-LGGISLIGSLLN------DPNPSVREKALNALNNL 81 (254)
T ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHH-cCCHHHHHHHcC------CCChHHHHHHHHHHHhc
Confidence 3478899999996 679999999999999985 5778999999 999999999999 77899999999999999
Q ss_pred ccccchhhhhhccCCcHHHHHHHHhcC--CHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHH
Q 020640 107 SIHDNNKKLVAETPMVIPLLMDALRSG--TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVAS 184 (323)
Q Consensus 107 s~~~~~~~~i~~~~g~i~~Lv~ll~~~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~ 184 (323)
|.+.+++..+-. .++.+.....+. +.+++..+.++|.+|+..++....+.. .++.++.+|.+++..++..+++
T Consensus 82 s~~~en~~~Ik~---~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk 156 (254)
T PF04826_consen 82 SVNDENQEQIKM---YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLK 156 (254)
T ss_pred CCChhhHHHHHH---HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHH
Confidence 999999887743 466666655443 678999999999999987777666643 7999999999999999999999
Q ss_pred HHHHhccCCchhHHHHhhCchHHHHHHhhcC---chHHHHHHHHHHHhcC
Q 020640 185 AIFNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTN 231 (323)
Q Consensus 185 aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~ 231 (323)
+|.||+.++.....++..+++..++.++... +....++.++.|+..+
T Consensus 157 ~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 157 VLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999865 5677888888999775
No 19
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=1.5e-13 Score=124.04 Aligned_cols=278 Identities=16% Similarity=0.179 Sum_probs=219.6
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhccc--------cc-----------------
Q 020640 33 FLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSES--------KC----------------- 87 (323)
Q Consensus 33 i~~Lv~~l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~--------~~----------------- 87 (323)
+...++++-++...+......+..+++ +|++-+.+..+..++..|.++|++. +.
T Consensus 136 iDEYiEllYee~~ek~rGsa~ilqlar-NPdNLeeL~~NEt~l~ALaRVlREDWkks~el~TNIiyifFcfst~tkfh~l 214 (791)
T KOG1222|consen 136 IDEYIELLYEETSEKNRGSAAILQLAR-NPDNLEELVNNETLLMALARVLREDWKKSFELGTNIIYIFFCFSTYTKFHPL 214 (791)
T ss_pred HHHHHHHHHhhchhhcccHHHHHHHhc-CcchHHHHHhhHHHHHHHHHHHHHHHHHhhccccceeeeeeeccccccccch
Confidence 778889886555577788888889995 7878777776466788888888640 00
Q ss_pred ------------------------------------CCCCC---------------------HHHHHHHHHHHHHhcccc
Q 020640 88 ------------------------------------ENGIN---------------------PNLQEDVITTLLNLSIHD 110 (323)
Q Consensus 88 ------------------------------------~~~~~---------------------~~~~~~a~~~L~~ls~~~ 110 (323)
|..++ +.+...|+..|.|++.+-
T Consensus 215 i~~ykIGtLCmn~idhElkRye~w~~El~k~krs~de~p~netLk~e~dr~~kklk~~~~KQeqLLrva~ylLlNlAed~ 294 (791)
T KOG1222|consen 215 IVQYKIGTLCMNAIDHELKRYEFWIAELKKTKRSTDEKPKNETLKEEIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAEDI 294 (791)
T ss_pred hhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhhcccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 11112 234455777788888776
Q ss_pred chhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhc
Q 020640 111 NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLC 190 (323)
Q Consensus 111 ~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~ 190 (323)
.....+.... ++..|+..|...+.+........|..|+.+++|+..+.+.|+++.|++++...+++.+...+..|.||+
T Consensus 295 ~~ElKMrrkn-iV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlS 373 (791)
T KOG1222|consen 295 SVELKMRRKN-IVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLS 373 (791)
T ss_pred hHHHHHHHHh-HHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhcc
Confidence 6666777764 799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhHHHHhhCchHHHHHHhhcCchHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHh
Q 020640 191 ITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTI 270 (323)
Q Consensus 191 ~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L 270 (323)
.+...+..++..|.+|.|..++.+..-..-|+.+|..++.+++.+..|..+++|+.+.+.+-.+.+.++.......-.||
T Consensus 374 FD~glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl 453 (791)
T KOG1222|consen 374 FDSGLRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINL 453 (791)
T ss_pred ccccccHHHhhccchHHHHHHhCCcccchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHH
Confidence 99999999999999999999999887777799999999999999999999999999998887666566666655556677
Q ss_pred cccChHhHHHHHhhcccHHHHHHHhhcC-CHHHHHHHHHHHHHHhcchh
Q 020640 271 CLSDRTKWKAMREEESTHGTISKLAQDG-TARAKRKATGILERLKRTVN 318 (323)
Q Consensus 271 ~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~A~~~L~~l~~~~~ 318 (323)
|.+..+ .+++-+..++..|.+..-.. ++.. ...+++++.|..
T Consensus 454 ~lnkRN--aQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg 496 (791)
T KOG1222|consen 454 CLNKRN--AQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEG 496 (791)
T ss_pred Hhcccc--ceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccc
Confidence 776643 24555677888887764333 3332 235666666544
No 20
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.57 E-value=7.4e-13 Score=118.10 Aligned_cols=284 Identities=14% Similarity=0.078 Sum_probs=212.1
Q ss_pred hhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCC-CCCHHHHHHHHHHHHHhc
Q 020640 30 RDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCEN-GINPNLQEDVITTLLNLS 107 (323)
Q Consensus 30 ~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~-~~~~~~~~~a~~~L~~ls 107 (323)
++.+..|.+..+ .+.++-.+..++|.|.|.++.++|..|.+ .||-..++++|+..+-++ ..+.+....+...|.|-.
T Consensus 86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~-lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~ 164 (604)
T KOG4500|consen 86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFN-LGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYI 164 (604)
T ss_pred HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHh-cCCceehHhhhccccccCCccHHHHHHHHHHHHHHhh
Confidence 344454555444 34677888999999999999999999999 999888888887654211 224567777888888877
Q ss_pred cccc-hhhhhhccCCcHHHHHH---------------------------------------------HHhc-CCHHHHHH
Q 020640 108 IHDN-NKKLVAETPMVIPLLMD---------------------------------------------ALRS-GTIETRSN 140 (323)
Q Consensus 108 ~~~~-~~~~i~~~~g~i~~Lv~---------------------------------------------ll~~-~~~~~~~~ 140 (323)
.+.+ .+.+..+. |+++.|.. ++.+ -+++..+.
T Consensus 165 l~~~~l~aq~~~~-gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM 243 (604)
T KOG4500|consen 165 LDSRELRAQVADA-GVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEM 243 (604)
T ss_pred CCcHHHHHHHHhc-ccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhH
Confidence 6655 56666664 46774432 2222 14555566
Q ss_pred HHHHHHHhcCCCCchhhhhccCChHHHHHHh-------------------------------------------------
Q 020640 141 AAAALFTLSALDSNKEVIGKSGALKPLIDLL------------------------------------------------- 171 (323)
Q Consensus 141 a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL------------------------------------------------- 171 (323)
+..++...+.++..+-.+++.|.++.+++++
T Consensus 244 ~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw 323 (604)
T KOG4500|consen 244 IFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESW 323 (604)
T ss_pred HHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHH
Confidence 6666666666666555555555555555544
Q ss_pred -hhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhc-----C--chHHHHHHHHHHHhcCHHHHHHHHhcCC
Q 020640 172 -DEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMD-----G--VHVDELLAILAMLSTNHRAVEEIGDLGG 243 (323)
Q Consensus 172 -~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~-----~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~ 243 (323)
.+++......+.-++.|+++.++++..+++.|.+..|+..+.. + +.+-.++.+|+|+...-.+|..+..+|+
T Consensus 324 ~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGv 403 (604)
T KOG4500|consen 324 FRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGV 403 (604)
T ss_pred hcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccch
Confidence 3445566677788899999999999999999999999998863 2 4578899999999999899999999999
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHH-HHHHHHHHHHHHhcc
Q 020640 244 VSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTAR-AKRKATGILERLKRT 316 (323)
Q Consensus 244 i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~-~~~~A~~~L~~l~~~ 316 (323)
.+.++.+++... ++++..-.+.+..+....+....++......++.|++|.++.+-. +--...++|.-|-+|
T Consensus 404 teaIL~~lk~~~-ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkH 476 (604)
T KOG4500|consen 404 TEAILLQLKLAS-PPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKH 476 (604)
T ss_pred HHHHHHHHHhcC-CcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHh
Confidence 999999999654 999999999999998888766678888888999999999987533 555555555555544
No 21
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.56 E-value=3.9e-12 Score=121.56 Aligned_cols=275 Identities=15% Similarity=0.148 Sum_probs=218.1
Q ss_pred HHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccch
Q 020640 34 LSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNN 112 (323)
Q Consensus 34 ~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~ 112 (323)
+.+...++ .+.+....++.+|..+... ...... . .+..+.|...|. ++++.++..++..|.++..+.+.
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~-~~~~~l--~-~~~~~~L~~gL~------h~~~~Vr~l~l~~l~~~~~~~~~ 110 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLSA-LSPDSL--L-PQYQPFLQRGLT------HPSPKVRRLALKQLGRIARHSEG 110 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhc-cCHHHH--H-HHHHHHHHHHhc------CCCHHHHHHHHHHHHHHhcCCHH
Confidence 34666675 3344445566667776643 222222 3 467788888888 77899999999999999888877
Q ss_pred hhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccC
Q 020640 113 KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCIT 192 (323)
Q Consensus 113 ~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~ 192 (323)
...++...++++.++.++.+++..+.+.|+.+|.+++.++.....+...+.+..|..++..++..++..+..++.+++..
T Consensus 111 ~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~ 190 (503)
T PF10508_consen 111 AAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASH 190 (503)
T ss_pred HHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhc
Confidence 66666666799999999999999999999999999999888888888888899999999988888999999999999887
Q ss_pred CchhHH-HHhhCchHHHHHHhhcCc--hHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChh-----HHHHHH
Q 020640 193 HENKAR-AVRDGGVSVILKKIMDGV--HVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDR-----NKENCI 264 (323)
Q Consensus 193 ~~~~~~-i~~~g~v~~Lv~ll~~~~--~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~-----~~~~a~ 264 (323)
.+.... +.+.|.++.++..+++++ ++.+++.+|..|+..+.+...+.+.|+++.|+.++.+...+. .--..+
T Consensus 191 S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~ 270 (503)
T PF10508_consen 191 SPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRM 270 (503)
T ss_pred CHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHH
Confidence 765555 456799999999998874 588999999999999999999999999999999998643333 233445
Q ss_pred HHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchhhc
Q 020640 265 AILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVNLT 320 (323)
Q Consensus 265 ~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~ 320 (323)
....+++...+...... ...++..|.+++.++++..+..|..++..++.+....
T Consensus 271 ~f~g~la~~~~~~v~~~--~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~ 324 (503)
T PF10508_consen 271 KFFGNLARVSPQEVLEL--YPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGK 324 (503)
T ss_pred HHHHHHHhcChHHHHHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHH
Confidence 67777777555433333 3567788888889999999999999999999776553
No 22
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.50 E-value=2.7e-11 Score=115.73 Aligned_cols=277 Identities=13% Similarity=0.141 Sum_probs=214.1
Q ss_pred hhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc
Q 020640 30 RDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 108 (323)
Q Consensus 30 ~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~ 108 (323)
.+..+.|...|. .++.+|.-++..|.++..++......+.+ .+.++.++..|. +++.++...|+.+|.+++.
T Consensus 76 ~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~-~~l~~~i~~~L~------~~d~~Va~~A~~~L~~l~~ 148 (503)
T PF10508_consen 76 PQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVD-NELLPLIIQCLR------DPDLSVAKAAIKALKKLAS 148 (503)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcC-ccHHHHHHHHHc------CCcHHHHHHHHHHHHHHhC
Confidence 456677777775 66889999999999999877766677778 999999999999 8899999999999999999
Q ss_pred ccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-chhhhhccCChHHHHHHhhhcCHhHHHHHHHHHH
Q 020640 109 HDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS-NKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIF 187 (323)
Q Consensus 109 ~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~ 187 (323)
.+.....++..+ .+..|..++..++..++.++..++.+++...+ ....+.+.|.++.+++.++++|.-++.+++..|.
T Consensus 149 ~~~~~~~l~~~~-~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~ 227 (503)
T PF10508_consen 149 HPEGLEQLFDSN-LLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLS 227 (503)
T ss_pred CchhHHHHhCcc-hHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 888777787765 58889999988888899999999999986554 4556666999999999999999999999999999
Q ss_pred HhccCCchhHHHHhhCchHHHHHHhhcC--ch------HHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhccCChh
Q 020640 188 NLCITHENKARAVRDGGVSVILKKIMDG--VH------VDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDR 258 (323)
Q Consensus 188 ~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~------~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~ 258 (323)
.|+..+.+...+.+.|+++.|..++.+. +. .--.+....+++.. |....... -..+..+.+++.+. +..
T Consensus 228 ~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~ 305 (503)
T PF10508_consen 228 ELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY-PAFLERLFSMLESQ-DPT 305 (503)
T ss_pred HHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH-HHHHHHHHHHhCCC-Chh
Confidence 9999889999999999999999999754 22 12233556667763 32211111 12344555666644 477
Q ss_pred HHHHHHHHHHHhcccChHhHHHH-Hhhcc----cHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 020640 259 NKENCIAILHTICLSDRTKWKAM-REEES----THGTISKLAQDGTARAKRKATGILERLKRTV 317 (323)
Q Consensus 259 ~~~~a~~~L~~L~~~~~~~~~~~-~~~~~----~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 317 (323)
.+..|..++..++...+++ ..+ ....+ .+........++..++|.++..+|.++....
T Consensus 306 ~~~~A~dtlg~igst~~G~-~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~ 368 (503)
T PF10508_consen 306 IREVAFDTLGQIGSTVEGK-QLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSG 368 (503)
T ss_pred HHHHHHHHHHHHhCCHHHH-HHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcC
Confidence 8999999999999887663 233 23233 3444445567778899999999999995443
No 23
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=1e-10 Score=106.03 Aligned_cols=279 Identities=17% Similarity=0.175 Sum_probs=200.4
Q ss_pred hhHHHHHHHHhc----CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHH
Q 020640 30 RDHFLSLLKKMS----ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN 105 (323)
Q Consensus 30 ~~~i~~Lv~~l~----~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ 105 (323)
..-+..+-+.++ .+...-..|+..|.|++. +......++. .+.+..|++.|. ..+.++.......|..
T Consensus 259 k~e~dr~~kklk~~~~KQeqLLrva~ylLlNlAe-d~~~ElKMrr-kniV~mLVKaLd------r~n~~Ll~lv~~FLkK 330 (791)
T KOG1222|consen 259 KEEIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAE-DISVELKMRR-KNIVAMLVKALD------RSNSSLLTLVIKFLKK 330 (791)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHH-HhHHHHHHHHHc------ccchHHHHHHHHHHHH
Confidence 345555656654 233445568889999995 5666777888 899999999999 5578999999999999
Q ss_pred hccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcC----------
Q 020640 106 LSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGH---------- 175 (323)
Q Consensus 106 ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~---------- 175 (323)
||...+|+..+.+.+ .++.|++++...+++.+......|.||+.+..++.+++..|.+|.|+.++.++.
T Consensus 331 LSIf~eNK~~M~~~~-iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lY 409 (791)
T KOG1222|consen 331 LSIFDENKIVMEQNG-IVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKHGIALNMLY 409 (791)
T ss_pred hhhhccchHHHHhcc-HHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcccchhhhhhhh
Confidence 999999999999975 899999999999999999999999999999999999999999999999886321
Q ss_pred --------------------------------------------------------------------------------
Q 020640 176 -------------------------------------------------------------------------------- 175 (323)
Q Consensus 176 -------------------------------------------------------------------------------- 175 (323)
T Consensus 410 h~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vR 489 (791)
T KOG1222|consen 410 HLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVR 489 (791)
T ss_pred hhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHH
Confidence
Q ss_pred -----------------------------HhHHHHHHHHHHHhccCCchhHHHHhh-CchHHHHHHhhcC----chHHHH
Q 020640 176 -----------------------------QSAMKDVASAIFNLCITHENKARAVRD-GGVSVILKKIMDG----VHVDEL 221 (323)
Q Consensus 176 -----------------------------~~~~~~al~aL~~L~~~~~~~~~i~~~-g~v~~Lv~ll~~~----~~~~~a 221 (323)
.++...++++|.||...+-.-..+++. ..+|-+-..|..+ +++-..
T Consensus 490 niSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~ 569 (791)
T KOG1222|consen 490 NISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQI 569 (791)
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHH
Confidence 111111122222222211111111111 2222222223322 233444
Q ss_pred HHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhcc-CChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCH
Q 020640 222 LAILAMLSTNHRAVEEIGDLGGVSCMLRIIRES-TCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTA 300 (323)
Q Consensus 222 ~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~ 300 (323)
+-++.-++.+.++...+...|+|+.|+++++.. .+++..-+-.-++..+..++ ..++.++.+...-.-|+.++++.+.
T Consensus 570 vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He-~tr~~miket~~~AylIDLMHDkN~ 648 (791)
T KOG1222|consen 570 VIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHE-LTRRLMIKETALGAYLIDLMHDKNA 648 (791)
T ss_pred HHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH-HHHHHHHhhccchHHHHHHHhcccH
Confidence 555555666677888888899999999999862 23556666666677777775 3467888888888999999999999
Q ss_pred HHHHHHHHHHHHHhcchh
Q 020640 301 RAKRKATGILERLKRTVN 318 (323)
Q Consensus 301 ~~~~~A~~~L~~l~~~~~ 318 (323)
++++-+-.+|-.++.+..
T Consensus 649 eiRkVCDn~LdIiae~d~ 666 (791)
T KOG1222|consen 649 EIRKVCDNALDIIAEHDK 666 (791)
T ss_pred HHHHHHHHHHHHHHHhhH
Confidence 999988888888876643
No 24
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.41 E-value=1e-11 Score=95.28 Aligned_cols=116 Identities=15% Similarity=0.273 Sum_probs=104.3
Q ss_pred HHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccC
Q 020640 198 RAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSD 274 (323)
Q Consensus 198 ~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~ 274 (323)
.+++.|+++.++++++++ .++..++.+|.+++.. ++.+..+++.|+++.+++++.+++ ++++..++++|++++...
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~-~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED-EEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCC-HHHHHHHHHHHHHHccCc
Confidence 467889999999999987 6899999999999997 899999999999999999999754 999999999999999988
Q ss_pred hHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640 275 RTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 315 (323)
Q Consensus 275 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 315 (323)
+. ....+.+.|+++.|++++.+++..+++.|.++|.+|+.
T Consensus 81 ~~-~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 ED-NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HH-HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 65 44555578999999999999999999999999999873
No 25
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.40 E-value=8.9e-12 Score=95.67 Aligned_cols=115 Identities=20% Similarity=0.316 Sum_probs=103.4
Q ss_pred hhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccC-CchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCH-
Q 020640 157 VIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCIT-HENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNH- 232 (323)
Q Consensus 157 ~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~-~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~- 232 (323)
.+++.|+++.|++++.+++..++..++.+|++++.. ++.+..+++.|+++.++++|.++ .++..++++|.+++.++
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 456789999999999999999999999999999998 57777888889999999999976 78999999999999974
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcc
Q 020640 233 RAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICL 272 (323)
Q Consensus 233 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~ 272 (323)
..+..+.+.|+++.|++++.+.+ ..+++.++++|.+|+.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~-~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSN-EDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCC-HHHHHHHHHHHHHhhC
Confidence 67777888999999999999765 8999999999999873
No 26
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=1e-09 Score=104.64 Aligned_cols=280 Identities=14% Similarity=0.217 Sum_probs=214.7
Q ss_pred hhhhhHHHHHHHHhc--CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHH
Q 020640 27 EADRDHFLSLLKKMS--ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLL 104 (323)
Q Consensus 27 ~~~~~~i~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~ 104 (323)
+..+..|+.|++.+. .-.+.|+.|+..|..+++ .||..++. .|+++|++.|++. ..|+++...++.++.
T Consensus 18 ~s~aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga--~Gmk~li~vL~~D----~~D~E~ik~~LdTl~ 88 (970)
T KOG0946|consen 18 QSAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGA--QGMKPLIQVLQRD----YMDPEIIKYALDTLL 88 (970)
T ss_pred ccHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHH--cccHHHHHHHhhc----cCCHHHHHHHHHHHH
Confidence 455689999999995 338889999999999996 37777666 6799999999865 568999999999999
Q ss_pred Hhccccc-------hh----------hhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--CCchhhhhc-cCCh
Q 020640 105 NLSIHDN-------NK----------KLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL--DSNKEVIGK-SGAL 164 (323)
Q Consensus 105 ~ls~~~~-------~~----------~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~-~g~i 164 (323)
++..+++ .+ ..+....+.+..++..+...+..++..++..+.++-.. .+.+..+.. +.+|
T Consensus 89 il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gI 168 (970)
T KOG0946|consen 89 ILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGI 168 (970)
T ss_pred HHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhH
Confidence 9876553 12 24455667788999999999999999999999999644 344555555 8899
Q ss_pred HHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhh-CchHHHHHHhhcC------chHHHHHHHHHHHhcC-HHHHH
Q 020640 165 KPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRD-GGVSVILKKIMDG------VHVDELLAILAMLSTN-HRAVE 236 (323)
Q Consensus 165 ~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~-g~v~~Lv~ll~~~------~~~~~a~~~L~~l~~~-~~~~~ 236 (323)
..|+.+|++....++..++..|..|+.++...+.++.. ++...|..++.+. -+.+.|+..|-||-.+ ..++.
T Consensus 169 S~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~ 248 (970)
T KOG0946|consen 169 SKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQN 248 (970)
T ss_pred HHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhh
Confidence 99999999999999999999999999999999998875 8999999999742 4789999999999995 67888
Q ss_pred HHHhcCCHHHHHHHHhc---cC-----ChhHHHH----HHHHHHHhcccC-----hHhHHHHHhhcccHHHHHHHhhcC-
Q 020640 237 EIGDLGGVSCMLRIIRE---ST-----CDRNKEN----CIAILHTICLSD-----RTKWKAMREEESTHGTISKLAQDG- 298 (323)
Q Consensus 237 ~i~~~g~i~~Lv~ll~~---~~-----~~~~~~~----a~~~L~~L~~~~-----~~~~~~~~~~~~~i~~L~~ll~~~- 298 (323)
.|.+.+.|+.|.++|.. ++ +...+.. ++-++..+..-+ ......++...+++..|..++.++
T Consensus 249 ~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~ 328 (970)
T KOG0946|consen 249 FFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPG 328 (970)
T ss_pred HHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCC
Confidence 88888999999988864 22 1222222 333334433211 123335666889999999988776
Q ss_pred -CHHHHHHHHHHHHHHhc
Q 020640 299 -TARAKRKATGILERLKR 315 (323)
Q Consensus 299 -~~~~~~~A~~~L~~l~~ 315 (323)
...+...+.-.+...-+
T Consensus 329 vp~dIltesiitvAevVR 346 (970)
T KOG0946|consen 329 VPADILTESIITVAEVVR 346 (970)
T ss_pred CcHhHHHHHHHHHHHHHH
Confidence 45566666555555443
No 27
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.33 E-value=1.6e-10 Score=104.22 Aligned_cols=252 Identities=15% Similarity=0.098 Sum_probs=168.7
Q ss_pred HHHHHHHHhccChhhHHHHhhhcC--CHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhcc------CC
Q 020640 50 AAKELRLLTKRMPSFRALFGESHD--AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAET------PM 121 (323)
Q Consensus 50 a~~~L~~l~~~~~~~~~~i~~~~g--~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~------~g 121 (323)
-+..+..+-+...+.|..+.+..| ....++++|+.- ++++++..+.+..+..+..++..+..++.. +.
T Consensus 30 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~----~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~ 105 (312)
T PF03224_consen 30 DLSLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKL----SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSD 105 (312)
T ss_dssp HHHHHHHHHHHHH-------------------HHHHHH-------HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH-
T ss_pred HHHHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHc----cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccch
Confidence 333444444433444444444122 366777888753 257899999999998876666544433321 12
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhh----cCHhHHHHHHHHHHHhccCCchhH
Q 020640 122 VIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE----GHQSAMKDVASAIFNLCITHENKA 197 (323)
Q Consensus 122 ~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~----~~~~~~~~al~aL~~L~~~~~~~~ 197 (323)
....+++++.+++..+...++..|..|....+....-...+.++.+++++.+ ++......++.+|.+|...++.|.
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~ 185 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQ 185 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHH
Confidence 4667888888999999999999999998766554444335677888888875 345667899999999999999999
Q ss_pred HHHhhCchHHHHHHh------hcC---chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHH
Q 020640 198 RAVRDGGVSVILKKI------MDG---VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILH 268 (323)
Q Consensus 198 ~i~~~g~v~~Lv~ll------~~~---~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~ 268 (323)
.+.+.|+++.++.++ ... .+...++-+++-|+.+++....+.+.+.++.|+++++....+++.+-++.++.
T Consensus 186 ~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~ 265 (312)
T PF03224_consen 186 VFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILR 265 (312)
T ss_dssp HHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHH
Confidence 999999999999999 222 56889999999999999999999999999999999998666899999999999
Q ss_pred HhcccChHhHHHHHhhcccHHHHHHHhhcC--CHHHHHH
Q 020640 269 TICLSDRTKWKAMREEESTHGTISKLAQDG--TARAKRK 305 (323)
Q Consensus 269 ~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~ 305 (323)
||....+......+...++.+.+-.+.... +++..+-
T Consensus 266 Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~ed 304 (312)
T PF03224_consen 266 NLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTED 304 (312)
T ss_dssp HTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHH
T ss_pred HHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHH
Confidence 999988642334444567777777776554 6666554
No 28
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.30 E-value=1.3e-09 Score=100.36 Aligned_cols=275 Identities=12% Similarity=0.046 Sum_probs=198.1
Q ss_pred HHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcccc
Q 020640 32 HFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD 110 (323)
Q Consensus 32 ~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~ 110 (323)
....++.+|. +|..+...|...|..+...+......... .-..+.|.+.|+. ..+...+..++..|..|...+
T Consensus 102 ~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l-~~~~~~l~~~l~~-----~~~~~~~~~~v~~L~~LL~~~ 175 (429)
T cd00256 102 TWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDL-DYYFNWLKEQLNN-----ITNNDYVQTAARCLQMLLRVD 175 (429)
T ss_pred chHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHH-HHHHHHHHHHhhc-----cCCcchHHHHHHHHHHHhCCc
Confidence 3455566774 66778889999999998654432111000 0122334444442 234677888889999999999
Q ss_pred chhhhhhccCCcHHHHHHHHhcC--CHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhc-CHhHHHHHHHHHH
Q 020640 111 NNKKLVAETPMVIPLLMDALRSG--TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEG-HQSAMKDVASAIF 187 (323)
Q Consensus 111 ~~~~~i~~~~g~i~~Lv~ll~~~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~al~aL~ 187 (323)
+.|..+.+.+| ++.|+.+|+.. +...+..++-++|-|+..++....+...+.++.|+++++.. .+++.+-++.+|.
T Consensus 176 ~~R~~f~~~~~-v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~ 254 (429)
T cd00256 176 EYRFAFVLADG-VPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFR 254 (429)
T ss_pred hHHHHHHHccC-HHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 99999998775 89999999863 56889999999999999888777777789999999999974 6789999999999
Q ss_pred HhccCC-------chhHHHHhhCchHHHHHHhhcC-----ch-------HHHHHHHHHHHhcC-----------------
Q 020640 188 NLCITH-------ENKARAVRDGGVSVILKKIMDG-----VH-------VDELLAILAMLSTN----------------- 231 (323)
Q Consensus 188 ~L~~~~-------~~~~~i~~~g~v~~Lv~ll~~~-----~~-------~~~a~~~L~~l~~~----------------- 231 (323)
||...+ .....++..|. +.++..|... ++ .+.--..+..+++.
T Consensus 255 Nll~~~~~~~~~~~~~~~mv~~~l-~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~ 333 (429)
T cd00256 255 NLISKRVDREVKKTAALQMVQCKV-LKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPV 333 (429)
T ss_pred HHhhcccccchhhhHHHHHHHcCh-HHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCC
Confidence 998743 12344555554 4555555532 11 11111222233321
Q ss_pred -------HHHHHHHHhcC--CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHH
Q 020640 232 -------HRAVEEIGDLG--GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARA 302 (323)
Q Consensus 232 -------~~~~~~i~~~g--~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~ 302 (323)
.++...|-+.+ ++..|++++..++++.+..-||.=+..++.+.|. -+.++.+-|+-..+++++.++++++
T Consensus 334 H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~-gr~i~~~lg~K~~vM~Lm~h~d~~V 412 (429)
T cd00256 334 HKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPR-GKDVVEQLGGKQRVMRLLNHEDPNV 412 (429)
T ss_pred CCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCcc-HHHHHHHcCcHHHHHHHhcCCCHHH
Confidence 14666666654 5899999997565577788899999999999875 4677888999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 020640 303 KRKATGILERLKR 315 (323)
Q Consensus 303 ~~~A~~~L~~l~~ 315 (323)
+..|..+++.|.-
T Consensus 413 r~eAL~avQklm~ 425 (429)
T cd00256 413 RYEALLAVQKLMV 425 (429)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988753
No 29
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.26 E-value=1.4e-09 Score=97.53 Aligned_cols=282 Identities=13% Similarity=0.050 Sum_probs=219.6
Q ss_pred HHHHHHHHhc--CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCC--CCCHHHHHHHHHHHHHhc
Q 020640 32 HFLSLLKKMS--ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCEN--GINPNLQEDVITTLLNLS 107 (323)
Q Consensus 32 ~i~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~--~~~~~~~~~a~~~L~~ls 107 (323)
..-.+++.+. -.++.+......+...+ .++..+..+.+ .|.++.++++++....-. ++.......++....-+.
T Consensus 224 l~~~l~~ll~~~v~~d~~eM~feila~~a-end~Vkl~la~-~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vlll 301 (604)
T KOG4500|consen 224 LVFMLLQLLPSMVREDIDEMIFEILAKAA-ENDLVKLSLAQ-NGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLL 301 (604)
T ss_pred HHHHHHHHHHHhhccchhhHHHHHHHHHh-cCcceeeehhh-cchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhh
Confidence 3445666663 23566677788888888 57778889999 999999999997532100 223445666777777778
Q ss_pred cccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhh-----cCHhHHHHH
Q 020640 108 IHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE-----GHQSAMKDV 182 (323)
Q Consensus 108 ~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~a 182 (323)
.+++....+...+.++..++..+++.+...+..+.-++.|++..++++..+++.|.+..|+++|.. ++.+.+..+
T Consensus 302 tGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~ 381 (604)
T KOG4500|consen 302 TGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHAC 381 (604)
T ss_pred cCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHH
Confidence 888888888886658899999999999999999999999999999999999999999999999875 467788999
Q ss_pred HHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHhc-CCHHHHHHHHhccCChh
Q 020640 183 ASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDL-GGVSCMLRIIRESTCDR 258 (323)
Q Consensus 183 l~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~-g~i~~Lv~ll~~~~~~~ 258 (323)
+.+|+||..--.++..++..|+++.++..++.. .+..+-++.++-+-.. +....++.++ ..+..|++--++++-..
T Consensus 382 lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aG 461 (604)
T KOG4500|consen 382 LSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAG 461 (604)
T ss_pred HHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccch
Confidence 999999999999999999999999999999865 6778888888776664 4455566655 46788888888655344
Q ss_pred HHHHHHHHHHHhcccChH-hHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640 259 NKENCIAILHTICLSDRT-KWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 315 (323)
Q Consensus 259 ~~~~a~~~L~~L~~~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 315 (323)
+--.+-+.+.-+..+... .....+-..|++..++......+-..+..|.-+|..+..
T Consensus 462 v~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~ 519 (604)
T KOG4500|consen 462 VAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTES 519 (604)
T ss_pred hhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHH
Confidence 777788888888877521 122334468899999999988888888888877776653
No 30
>PRK09687 putative lyase; Provisional
Probab=99.14 E-value=9.1e-09 Score=90.95 Aligned_cols=235 Identities=11% Similarity=0.034 Sum_probs=144.5
Q ss_pred hhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640 29 DRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 107 (323)
Q Consensus 29 ~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls 107 (323)
..-.++.|++.|. .+..+|..|+..|..+-. ..+++.+..+++ ++++.++..|+.+|..+-
T Consensus 21 ~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~------~~d~~vR~~A~~aLg~lg 82 (280)
T PRK09687 21 KKLNDDELFRLLDDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCS------SKNPIERDIGADILSQLG 82 (280)
T ss_pred hhccHHHHHHHHhCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHh------CCCHHHHHHHHHHHHhcC
Confidence 3346778888885 668889999999876652 345666777777 778999999999999885
Q ss_pred cccchhhhhhccCCcHHHHHHH-HhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHH
Q 020640 108 IHDNNKKLVAETPMVIPLLMDA-LRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAI 186 (323)
Q Consensus 108 ~~~~~~~~i~~~~g~i~~Lv~l-l~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL 186 (323)
..... . ..+++.|..+ ++++++.++..++.+|.++....... ...+++.+...+.+++..++..++.+|
T Consensus 83 ~~~~~-----~-~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aL 152 (280)
T PRK09687 83 MAKRC-----Q-DNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFAL 152 (280)
T ss_pred CCccc-----h-HHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 43221 1 1246777766 56778899999999999885422111 122455666667777778888888887
Q ss_pred HHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHH
Q 020640 187 FNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCI 264 (323)
Q Consensus 187 ~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~ 264 (323)
..+. ...+++.|+.++++. .++..|+.+|..+..... .+++.|+.++.+.+ ..++..|+
T Consensus 153 g~~~----------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~--------~~~~~L~~~L~D~~-~~VR~~A~ 213 (280)
T PRK09687 153 SVIN----------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP--------DIREAFVAMLQDKN-EEIRIEAI 213 (280)
T ss_pred hccC----------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH--------HHHHHHHHHhcCCC-hHHHHHHH
Confidence 6542 112566777777655 566667766666632110 12333444444322 44444444
Q ss_pred HHHHHhcccChHhHHHH-------------------HhhcccHHHHHHHhh-cCCHHHHHHHHHHHHH
Q 020640 265 AILHTICLSDRTKWKAM-------------------REEESTHGTISKLAQ-DGTARAKRKATGILER 312 (323)
Q Consensus 265 ~~L~~L~~~~~~~~~~~-------------------~~~~~~i~~L~~ll~-~~~~~~~~~A~~~L~~ 312 (323)
.+|..+-... ....+ +.+...++.|.+++. +++++++.+|.+.|..
T Consensus 214 ~aLg~~~~~~--av~~Li~~L~~~~~~~~a~~ALg~ig~~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 214 IGLALRKDKR--VLSVLIKELKKGTVGDLIIEAAGELGDKTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHccCChh--HHHHHHHHHcCCchHHHHHHHHHhcCCHhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 4444321100 00000 012346778888886 6688888888887753
No 31
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.05 E-value=5.4e-09 Score=94.25 Aligned_cols=214 Identities=19% Similarity=0.124 Sum_probs=154.5
Q ss_pred HHHHHHHHh---cCCchhHHHHHHHHHHHhccChhhHHHHhhhc-----CCHHHHHHhhcccccCCCCCHHHHHHHHHHH
Q 020640 32 HFLSLLKKM---SATLPDQTEAAKELRLLTKRMPSFRALFGESH-----DAIPQLLSPLSESKCENGINPNLQEDVITTL 103 (323)
Q Consensus 32 ~i~~Lv~~l---~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~-----g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L 103 (323)
....++..| .++.++..-.+..+..+...++.....|.... ....++++++. .+|..++..|+.+|
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~------~~D~~i~~~a~~iL 129 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLD------RNDSFIQLKAAFIL 129 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-------SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhc------CCCHHHHHHHHHHH
Confidence 444455555 25577788899999999988876665555411 14677888777 66899999999999
Q ss_pred HHhccccchhhhhhccCCcHHHHHHHHhc----CCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhh-----h-
Q 020640 104 LNLSIHDNNKKLVAETPMVIPLLMDALRS----GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLD-----E- 173 (323)
Q Consensus 104 ~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~----~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~-----~- 173 (323)
..+....+.+...... ++++.++..+++ .+.+.+..++.+|.+|...++.|..+.+.|+++.++.++. .
T Consensus 130 t~Ll~~~~~~~~~~~~-~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~ 208 (312)
T PF03224_consen 130 TSLLSQGPKRSEKLVK-EALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSN 208 (312)
T ss_dssp HHHHTSTTT--HHHHH-HHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH-------
T ss_pred HHHHHcCCccccchHH-HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCC
Confidence 9987666543333222 357778888765 3456678999999999999999999999999999999992 2
Q ss_pred -cCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC---chHHHHHHHHHHHhcCHH--HHHHHHhcCCHHHH
Q 020640 174 -GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHR--AVEEIGDLGGVSCM 247 (323)
Q Consensus 174 -~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~~~--~~~~i~~~g~i~~L 247 (323)
.+..++.+++-++|.|+.+++....+...+.++.|++++++. .+..-++.+|.|+...+. ....++..|+++.+
T Consensus 209 ~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l 288 (312)
T PF03224_consen 209 SSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTL 288 (312)
T ss_dssp --HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHH
T ss_pred CCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHH
Confidence 256788999999999999999999999999999999999865 678889999999999754 88888888866655
Q ss_pred HHHHh
Q 020640 248 LRIIR 252 (323)
Q Consensus 248 v~ll~ 252 (323)
-.+..
T Consensus 289 ~~L~~ 293 (312)
T PF03224_consen 289 QNLSE 293 (312)
T ss_dssp HHHHS
T ss_pred HHHhc
Confidence 55554
No 32
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.02 E-value=1e-07 Score=85.54 Aligned_cols=224 Identities=13% Similarity=0.089 Sum_probs=173.6
Q ss_pred CCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhc--CCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHH
Q 020640 90 GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRS--GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPL 167 (323)
Q Consensus 90 ~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~--~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~L 167 (323)
+++......++.+|..+...++.|..++...| +..++..+.+ .+..++.+.+-+++-|+.++.-.+.+...+.++.|
T Consensus 168 ~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg-~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L 246 (442)
T KOG2759|consen 168 STNNDYIQFAARCLQTLLRVDEYRYAFVIADG-VSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDL 246 (442)
T ss_pred cCCCchHHHHHHHHHHHhcCcchhheeeecCc-chhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHH
Confidence 46778888999999999999999999999888 6778888843 37899999999999999988888888678999999
Q ss_pred HHHhhhc-CHhHHHHHHHHHHHhccCCc---hh----HHHHhhCchHHHHHHhhcC-----ch-------HHHHHHHHHH
Q 020640 168 IDLLDEG-HQSAMKDVASAIFNLCITHE---NK----ARAVRDGGVSVILKKIMDG-----VH-------VDELLAILAM 227 (323)
Q Consensus 168 v~lL~~~-~~~~~~~al~aL~~L~~~~~---~~----~~i~~~g~v~~Lv~ll~~~-----~~-------~~~a~~~L~~ 227 (323)
.+++++. ...+.+-++.++.|+....+ .+ ..++. +.+++-++.|..+ ++ ++.--.-...
T Consensus 247 ~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~-~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~ 325 (442)
T KOG2759|consen 247 SDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVL-CKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQD 325 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHh-cCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 9999985 67789999999999988763 22 23333 4555666666532 22 2222222233
Q ss_pred HhcC------------------------HHHHHHHHhcC--CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHH
Q 020640 228 LSTN------------------------HRAVEEIGDLG--GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAM 281 (323)
Q Consensus 228 l~~~------------------------~~~~~~i~~~g--~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~ 281 (323)
|++. .++...+-+.. ++..|+++|+.++++.+.--||.=+.....+.|. -+.+
T Consensus 326 LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~-gk~v 404 (442)
T KOG2759|consen 326 LSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPE-GKAV 404 (442)
T ss_pred hccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCch-HhHH
Confidence 3332 14555555543 6999999999777677777888889999998876 5688
Q ss_pred HhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640 282 REEESTHGTISKLAQDGTARAKRKATGILERLKRT 316 (323)
Q Consensus 282 ~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 316 (323)
+.+.|+-+.+.+++.+++++++..|..++..|-.+
T Consensus 405 v~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 405 VEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 88999999999999999999999999999887643
No 33
>PRK09687 putative lyase; Provisional
Probab=98.99 E-value=3.5e-08 Score=87.27 Aligned_cols=195 Identities=14% Similarity=0.069 Sum_probs=144.3
Q ss_pred CHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC
Q 020640 74 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS 153 (323)
Q Consensus 74 ~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~ 153 (323)
-++.|.++|. +++..++..++..|..+.. ..+++.+..+++++++..+..++++|..|...+.
T Consensus 24 ~~~~L~~~L~------d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~ 86 (280)
T PRK09687 24 NDDELFRLLD------DHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR 86 (280)
T ss_pred cHHHHHHHHh------CCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc
Confidence 5788999998 8899999999999987742 2367788889999999999999999999864332
Q ss_pred chhhhhccCChHHHHHH-hhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc
Q 020640 154 NKEVIGKSGALKPLIDL-LDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST 230 (323)
Q Consensus 154 ~~~~i~~~g~i~~Lv~l-L~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~ 230 (323)
. ...+++.|..+ ++++++.++..|+.+|.+++...... ...+++.+...+.+. .++..++.+|..+.
T Consensus 87 ~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~- 156 (280)
T PRK09687 87 C-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN- 156 (280)
T ss_pred c-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC-
Confidence 1 22367888877 56678999999999999986543221 111344566666654 68888888885442
Q ss_pred CHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHH
Q 020640 231 NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGIL 310 (323)
Q Consensus 231 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L 310 (323)
...+++.|+.++++.+ +.++..|+.+|..+...++ ..++.|+..+.+.++.++..|.+.|
T Consensus 157 ---------~~~ai~~L~~~L~d~~-~~VR~~A~~aLg~~~~~~~----------~~~~~L~~~L~D~~~~VR~~A~~aL 216 (280)
T PRK09687 157 ---------DEAAIPLLINLLKDPN-GDVRNWAAFALNSNKYDNP----------DIREAFVAMLQDKNEEIRIEAIIGL 216 (280)
T ss_pred ---------CHHHHHHHHHHhcCCC-HHHHHHHHHHHhcCCCCCH----------HHHHHHHHHhcCCChHHHHHHHHHH
Confidence 2236899999999654 8899999999999844332 3455677777777777788777777
Q ss_pred HHHhc
Q 020640 311 ERLKR 315 (323)
Q Consensus 311 ~~l~~ 315 (323)
..+..
T Consensus 217 g~~~~ 221 (280)
T PRK09687 217 ALRKD 221 (280)
T ss_pred HccCC
Confidence 66543
No 34
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=8.7e-08 Score=84.77 Aligned_cols=181 Identities=17% Similarity=0.186 Sum_probs=155.5
Q ss_pred CCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCc-hhHHHHhhCchHHHHHH
Q 020640 133 GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHE-NKARAVRDGGVSVILKK 211 (323)
Q Consensus 133 ~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~-~~~~i~~~g~v~~Lv~l 211 (323)
.+.+-+..|..-|..+..+-+|...+...|++.+++..+.+++..++..|++.|...+.+++ ....+++.|+++.|+.+
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 47888889999999998888899999999999999999999999999999999999999886 45557888999999999
Q ss_pred hhcC---chHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhcc-CChhHHHHHHHHHHHhcccChHhHHHHHhhcc
Q 020640 212 IMDG---VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRES-TCDRNKENCIAILHTICLSDRTKWKAMREEES 286 (323)
Q Consensus 212 l~~~---~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~ 286 (323)
+.+. +.+.+|+.+++.+-.+ +.+...|...++...|...+++. .+.+.|..++..+..|....... +.++...+
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~-~d~~~~~~ 253 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSD-EDIASSLG 253 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhh-hhHHHHhh
Confidence 9865 5789999999999994 89999999998899999999973 44788999999999999987654 34666778
Q ss_pred cHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 020640 287 THGTISKLAQDGTARAKRKATGILERLK 314 (323)
Q Consensus 287 ~i~~L~~ll~~~~~~~~~~A~~~L~~l~ 314 (323)
+...+..+....+..+++.|...+-.+.
T Consensus 254 f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 254 FQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred hhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 8888888988888888888877655443
No 35
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.93 E-value=3.3e-07 Score=93.86 Aligned_cols=224 Identities=17% Similarity=0.075 Sum_probs=140.2
Q ss_pred hhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640 29 DRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 107 (323)
Q Consensus 29 ~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls 107 (323)
+...++.|++.|. +++.+|..|+..|..+. . .+.++.|+..|+ ++++.++..|+.+|..+.
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~-----------~-~~~~~~L~~aL~------D~d~~VR~~Aa~aL~~l~ 680 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETT-----------P-PGFGPALVAALG------DGAAAVRRAAAEGLRELV 680 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhc-----------c-hhHHHHHHHHHc------CCCHHHHHHHHHHHHHHH
Confidence 4456778888885 67899999999998764 2 456888999998 788999999999988763
Q ss_pred cccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHH
Q 020640 108 IHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIF 187 (323)
Q Consensus 108 ~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~ 187 (323)
... ...+.|...|+++++.++..++.+|..+... -...|++.|.++++.++..|+.+|.
T Consensus 681 ~~~----------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~-----------~~~~l~~~L~D~d~~VR~~Av~aL~ 739 (897)
T PRK13800 681 EVL----------PPAPALRDHLGSPDPVVRAAALDVLRALRAG-----------DAALFAAALGDPDHRVRIEAVRALV 739 (897)
T ss_pred hcc----------CchHHHHHHhcCCCHHHHHHHHHHHHhhccC-----------CHHHHHHHhcCCCHHHHHHHHHHHh
Confidence 211 1134566667777777777777777665321 1234555556666666666666655
Q ss_pred Hhcc---------CC--chhHHHH---------hhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHH
Q 020640 188 NLCI---------TH--ENKARAV---------RDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVS 245 (323)
Q Consensus 188 ~L~~---------~~--~~~~~i~---------~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~ 245 (323)
.+-. ++ +.|.... ....++.|..+++++ .++..++..|..+...+. .++
T Consensus 740 ~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~---------~~~ 810 (897)
T PRK13800 740 SVDDVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPPD---------DVA 810 (897)
T ss_pred cccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcch---------hHH
Confidence 4310 00 0111110 001245566666655 456666666655533211 124
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 020640 246 CMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERL 313 (323)
Q Consensus 246 ~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l 313 (323)
.++..+++++ ..++..|+.+|..+... ..++.|+.++.+.+..++..|+.+|..+
T Consensus 811 ~l~~aL~d~d-~~VR~~Aa~aL~~l~~~------------~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 811 AATAALRASA-WQVRQGAARALAGAAAD------------VAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHHHHhcCCC-hHHHHHHHHHHHhcccc------------chHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 5667777543 77888888888765421 2447788888888888888888888776
No 36
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=5.6e-07 Score=79.72 Aligned_cols=226 Identities=16% Similarity=0.114 Sum_probs=164.6
Q ss_pred CchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccc-hhhhhhccCC
Q 020640 43 TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN-NKKLVAETPM 121 (323)
Q Consensus 43 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~g 121 (323)
+.+.+..|+..|..++ ++-+|...+.. .||..+++.++. +.+..++..|+.++...+.+.. .+..+.+.+
T Consensus 96 ~le~ke~ald~Le~lv-e~iDnAndl~~-~ggl~~ll~~l~------~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~- 166 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELV-EDIDNANDLIS-LGGLVPLLGYLE------NSDAELRELAARVIGTAVQNNPKSQEQVIELG- 166 (342)
T ss_pred CHHHHHHHHHHHHHHH-HhhhhHHhHhh-ccCHHHHHHHhc------CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcc-
Confidence 4677899999999999 57889999999 999999999998 7789999999999998887766 788888876
Q ss_pred cHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCC-CchhhhhccCChHHHHHHhhh--cCHhHHHHHHHHHHHhccCCchhH
Q 020640 122 VIPLLMDALRSG-TIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDE--GHQSAMKDVASAIFNLCITHENKA 197 (323)
Q Consensus 122 ~i~~Lv~ll~~~-~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~al~aL~~L~~~~~~~~ 197 (323)
+.+.|+.++.+. +...+..|..+++.|-.+. .....+...++...|.+.+.+ .+..++..++..+..|...+....
T Consensus 167 ~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~ 246 (342)
T KOG2160|consen 167 ALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDE 246 (342)
T ss_pred cHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhh
Confidence 599999999865 5577789999999998654 456777777889999999999 577889999999999987664433
Q ss_pred HHHh-hCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHH-Hh----cCCHHHHHHHHhccCChhHHHHHHHHHHH
Q 020640 198 RAVR-DGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEI-GD----LGGVSCMLRIIRESTCDRNKENCIAILHT 269 (323)
Q Consensus 198 ~i~~-~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i-~~----~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~ 269 (323)
.+.. .|....++.+.... ...+.+++++..+......+..+ .. +..+.......+.......++.-+.-++.
T Consensus 247 d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~~~~~~~~~~l~e~l~~~~q~~~~~~~~~~e~~l~~~l~~ 326 (342)
T KOG2160|consen 247 DIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSELSTRKELFVSLLNLEELLKSLIQIISDHAALEEERQLVNSLWE 326 (342)
T ss_pred hHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 46666666666544 56777777766665532222222 21 12344444444422224455556666666
Q ss_pred hcccChHh
Q 020640 270 ICLSDRTK 277 (323)
Q Consensus 270 L~~~~~~~ 277 (323)
.+...+..
T Consensus 327 ~~~e~~~~ 334 (342)
T KOG2160|consen 327 ICGEVPSI 334 (342)
T ss_pred HhcccHHH
Confidence 66655543
No 37
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=5.2e-07 Score=87.22 Aligned_cols=255 Identities=15% Similarity=0.169 Sum_probs=191.1
Q ss_pred hHHHHHHHHhc--CCchhHHHHHHHHHHHhc-cChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640 31 DHFLSLLKKMS--ATLPDQTEAAKELRLLTK-RMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 107 (323)
Q Consensus 31 ~~i~~Lv~~l~--~~~~~~~~a~~~L~~l~~-~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls 107 (323)
..+..|+.-|. +|+..|.+|+..|+.+-. .+++.-..|-- .-.+|.|+.+|+. ..+.+++..|+.+|.+|+
T Consensus 167 Sk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv-~slvp~Lv~LL~~-----E~n~DIMl~AcRaltyl~ 240 (1051)
T KOG0168|consen 167 SKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPV-KSLVPVLVALLSH-----EHNFDIMLLACRALTYLC 240 (1051)
T ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccH-HHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHH
Confidence 35666777774 467788888888776543 33433333333 5689999999985 568999999999999997
Q ss_pred cccc-hhhhhhccCCcHHHHHHHHh-cCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHH
Q 020640 108 IHDN-NKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASA 185 (323)
Q Consensus 108 ~~~~-~~~~i~~~~g~i~~Lv~ll~-~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~a 185 (323)
.--. ....++.. ++||.|+.-|. -+-.++.++++.+|..++... -..+.+.|++...+..|+--+..+++.|+.+
T Consensus 241 evlP~S~a~vV~~-~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFFSi~aQR~Alai 317 (1051)
T KOG0168|consen 241 EVLPRSSAIVVDE-HAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFFSIHAQRVALAI 317 (1051)
T ss_pred hhccchhheeecc-cchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 6544 55556664 57998887665 467899999999999998633 2456778999999999998888899999999
Q ss_pred HHHhccCC--chhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc----CHHHHHHHHhcCCHHHHHHHHhccC--
Q 020640 186 IFNLCITH--ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST----NHRAVEEIGDLGGVSCMLRIIREST-- 255 (323)
Q Consensus 186 L~~L~~~~--~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~----~~~~~~~i~~~g~i~~Lv~ll~~~~-- 255 (323)
-.|.|..= +.-..+++ ++|.|..+|+.. .+.+.++.+++.++. .++.-+.+...|.|....+++....
T Consensus 318 aaN~Cksi~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~ 395 (1051)
T KOG0168|consen 318 AANCCKSIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTI 395 (1051)
T ss_pred HHHHHhcCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCccc
Confidence 99998743 22223333 899999999854 677777777777765 4677788999999999999997532
Q ss_pred -ChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhc
Q 020640 256 -CDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD 297 (323)
Q Consensus 256 -~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~ 297 (323)
+..+....+..|.-+|++.+-.++.++ +.++...|..++..
T Consensus 396 Ls~~~~~~vIrmls~msS~~pl~~~tl~-k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 396 LSNGTYTGVIRMLSLMSSGSPLLFRTLL-KLDIADTLKRILQG 437 (1051)
T ss_pred ccccchhHHHHHHHHHccCChHHHHHHH-HhhHHHHHHHHHhc
Confidence 245677788889999998876555554 56888888888754
No 38
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=3.2e-07 Score=88.59 Aligned_cols=230 Identities=15% Similarity=0.128 Sum_probs=167.3
Q ss_pred HHHHHHhhcccccCCCCCHHHHHHHHHHHH-Hhccccc-hhhhhhccCCcHHHHHHHHhcC-CHHHHHHHHHHHHHhc-C
Q 020640 75 IPQLLSPLSESKCENGINPNLQEDVITTLL-NLSIHDN-NKKLVAETPMVIPLLMDALRSG-TIETRSNAAAALFTLS-A 150 (323)
Q Consensus 75 i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~-~ls~~~~-~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~~L~-~ 150 (323)
+..|+.=|+. +.|+..|..|+.=|+ +|+...+ .-..+.-+ -++|.|+.+|+.+ +.++...||++|.+|+ .
T Consensus 169 ~kkLL~gL~~-----~~Des~Qleal~Elce~L~mgnEesLs~fpv~-slvp~Lv~LL~~E~n~DIMl~AcRaltyl~ev 242 (1051)
T KOG0168|consen 169 AKKLLQGLQA-----ESDESQQLEALTELCEMLSMGNEESLSGFPVK-SLVPVLVALLSHEHNFDIMLLACRALTYLCEV 242 (1051)
T ss_pred HHHHHHhccc-----cCChHHHHHHHHHHHHHHhhcchhhhccccHH-HHHHHHHHHHhccccHHHHHHHHHHHHHHHhh
Confidence 4445544542 336666666665554 5665554 33333333 3899999999986 7899999999999998 4
Q ss_pred CCCchhhhhccCChHHHHHHhh-hcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHH
Q 020640 151 LDSNKEVIGKSGALKPLIDLLD-EGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAM 227 (323)
Q Consensus 151 ~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~ 227 (323)
.+.....+++.++||.|++-|. -...++.+.++.+|-.+++... ..++++|++...+.+|+-- ..+..|+.+.+|
T Consensus 243 lP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN 320 (1051)
T KOG0168|consen 243 LPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQAGALSAVLSYLDFFSIHAQRVALAIAAN 320 (1051)
T ss_pred ccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888899999999998655 4788899999999999987554 5678999999999998733 679999999999
Q ss_pred HhcC--HHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcc---cChHhHHHHHhhcccHHHHHHHhhcC----
Q 020640 228 LSTN--HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICL---SDRTKWKAMREEESTHGTISKLAQDG---- 298 (323)
Q Consensus 228 l~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~---~~~~~~~~~~~~~~~i~~L~~ll~~~---- 298 (323)
+|.. ++.=..+++ .+|.|..++...+ .+..+.++-++..++. +.+++..++. ..+.+....+|+.-.
T Consensus 321 ~Cksi~sd~f~~v~e--alPlL~~lLs~~D-~k~ies~~ic~~ri~d~f~h~~~kLdql~-s~dLi~~~~qLlsvt~t~L 396 (1051)
T KOG0168|consen 321 CCKSIRSDEFHFVME--ALPLLTPLLSYQD-KKPIESVCICLTRIADGFQHGPDKLDQLC-SHDLITNIQQLLSVTPTIL 396 (1051)
T ss_pred HHhcCCCccchHHHH--HHHHHHHHHhhcc-chhHHHHHHHHHHHHHhcccChHHHHHHh-chhHHHHHHHHHhcCcccc
Confidence 9995 555555554 4899999999655 8888998888888865 4455666665 467777777776443
Q ss_pred CHHHHHHHHHHHHHHhcc
Q 020640 299 TARAKRKATGILERLKRT 316 (323)
Q Consensus 299 ~~~~~~~A~~~L~~l~~~ 316 (323)
+..+..--.++|..|+.-
T Consensus 397 s~~~~~~vIrmls~msS~ 414 (1051)
T KOG0168|consen 397 SNGTYTGVIRMLSLMSSG 414 (1051)
T ss_pred cccchhHHHHHHHHHccC
Confidence 233445555566666543
No 39
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.84 E-value=9.4e-07 Score=90.56 Aligned_cols=225 Identities=16% Similarity=0.128 Sum_probs=142.1
Q ss_pred hhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc
Q 020640 30 RDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 108 (323)
Q Consensus 30 ~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~ 108 (323)
.+.++.|+..|+ ++..+|..|+..|..+.... ...+.|...|. ++++.++..++.+|..+..
T Consensus 651 ~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~-----------~~~~~L~~~L~------~~d~~VR~~A~~aL~~~~~ 713 (897)
T PRK13800 651 PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL-----------PPAPALRDHLG------SPDPVVRAAALDVLRALRA 713 (897)
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-----------CchHHHHHHhc------CCCHHHHHHHHHHHHhhcc
Confidence 357788888886 56888999988887774211 11234555555 4556666666665554421
Q ss_pred cc-----------c--hhh----hhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHh
Q 020640 109 HD-----------N--NKK----LVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLL 171 (323)
Q Consensus 109 ~~-----------~--~~~----~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL 171 (323)
.+ + .|. .+...+ ..+.|..++.+++++++..++.+|..+.... ...++.|..++
T Consensus 714 ~~~~~l~~~L~D~d~~VR~~Av~aL~~~~-~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~--------~~~~~~L~~ll 784 (897)
T PRK13800 714 GDAALFAAALGDPDHRVRIEAVRALVSVD-DVESVAGAATDENREVRIAVAKGLATLGAGG--------APAGDAVRALT 784 (897)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHhccc-CcHHHHHHhcCCCHHHHHHHHHHHHHhcccc--------chhHHHHHHHh
Confidence 00 0 000 000001 1233445555556666666666665553321 12367788888
Q ss_pred hhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHH
Q 020640 172 DEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLR 249 (323)
Q Consensus 172 ~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ 249 (323)
+++++.++..|+.+|..+.... ..++.++..+.++ .++..|+.+|..+.. ...++.|+.
T Consensus 785 ~D~d~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~ 845 (897)
T PRK13800 785 GDPDPLVRAAALAALAELGCPP---------DDVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVE 845 (897)
T ss_pred cCCCHHHHHHHHHHHHhcCCcc---------hhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHH
Confidence 8888888888888887763221 1224577777766 578888888876542 234589999
Q ss_pred HHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHH
Q 020640 250 IIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILE 311 (323)
Q Consensus 250 ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~ 311 (323)
++++.+ ..++..|+.+|..+. .++ ...+.|...+.++++.+++.|..+|.
T Consensus 846 ~L~D~~-~~VR~~A~~aL~~~~-~~~----------~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 846 ALTDPH-LDVRKAAVLALTRWP-GDP----------AARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HhcCCC-HHHHHHHHHHHhccC-CCH----------HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 999765 899999999999972 121 24567778899999999999999886
No 40
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.74 E-value=5.2e-06 Score=76.90 Aligned_cols=228 Identities=14% Similarity=0.085 Sum_probs=163.3
Q ss_pred CCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhh-hhcc----CCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020640 73 DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKL-VAET----PMVIPLLMDALRSGTIETRSNAAAALFT 147 (323)
Q Consensus 73 g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~-i~~~----~g~i~~Lv~ll~~~~~~~~~~a~~~L~~ 147 (323)
..+..++++|.. ....++..+.+..+.-+...++.+.. +.+. ......++.+|..++..+...++.+|..
T Consensus 53 ~y~~~~l~ll~~-----~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~ 127 (429)
T cd00256 53 QYVKTFVNLLSQ-----IDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAK 127 (429)
T ss_pred HHHHHHHHHHhc-----cCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHH
Confidence 356778888875 45678888888888877666555443 3332 3456677889988888999999999999
Q ss_pred hcCCCCchhhhhc-cCChHHHHHHhhhc-CHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC----chHHHH
Q 020640 148 LSALDSNKEVIGK-SGALKPLIDLLDEG-HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG----VHVDEL 221 (323)
Q Consensus 148 L~~~~~~~~~i~~-~g~i~~Lv~lL~~~-~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~----~~~~~a 221 (323)
+.........-.. .-..+-|...++.. +...+.-++.+|.+|...++.|..+.+.++++.|+.+|+.. .+...+
T Consensus 128 l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ 207 (429)
T cd00256 128 LACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQS 207 (429)
T ss_pred HHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHH
Confidence 9654322111000 11223344444443 46677788899999999999999999988999999999863 568889
Q ss_pred HHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccCh-----HhHHHHHhhcccHHHHHHHhh
Q 020640 222 LAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR-----TKWKAMREEESTHGTISKLAQ 296 (323)
Q Consensus 222 ~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~-----~~~~~~~~~~~~i~~L~~ll~ 296 (323)
+-+++-|+..++....+.+.+.|+.|+++++....+++.+-++.+|.||...+. ......+.+.|..+.+..+..
T Consensus 208 ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~ 287 (429)
T cd00256 208 IFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQ 287 (429)
T ss_pred HHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhc
Confidence 999999999988888887789999999999976668899999999999988541 123334445566665655554
Q ss_pred cC--CHHHHHH
Q 020640 297 DG--TARAKRK 305 (323)
Q Consensus 297 ~~--~~~~~~~ 305 (323)
.. ++++.+-
T Consensus 288 rk~~DedL~ed 298 (429)
T cd00256 288 RKYDDEDLTDD 298 (429)
T ss_pred CCCCcHHHHHH
Confidence 43 5555443
No 41
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.73 E-value=1.2e-06 Score=84.69 Aligned_cols=251 Identities=16% Similarity=0.182 Sum_probs=159.8
Q ss_pred HHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcccc
Q 020640 32 HFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD 110 (323)
Q Consensus 32 ~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~ 110 (323)
.++.+.+-+. +++..|.-|+.+|.+++ +++... ..++.+.++|. ++++.++..|+.++..+....
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~------~l~~~v~~ll~------~~~~~VRk~A~~~l~~i~~~~ 145 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAE------PLIPDVIKLLS------DPSPYVRKKAALALLKIYRKD 145 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHH------HHHHHHHHHHH------SSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhh------HHHHHHHHHhc------CCchHHHHHHHHHHHHHhccC
Confidence 5566666664 56788999999999988 344332 24566788888 778999999999998886543
Q ss_pred chhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhc
Q 020640 111 NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLC 190 (323)
Q Consensus 111 ~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~ 190 (323)
.. .+... +++.+..++.+.++.++..|+.++..+...++....+. ...++.|.+++...++-.+...++.|..++
T Consensus 146 p~---~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~ 220 (526)
T PF01602_consen 146 PD---LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKSLI-PKLIRILCQLLSDPDPWLQIKILRLLRRYA 220 (526)
T ss_dssp HC---CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTTHH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTST
T ss_pred HH---HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhhhhH-HHHHHHhhhcccccchHHHHHHHHHHHhcc
Confidence 22 22222 57888899988999999999999999911111100111 223444455555677778888888888777
Q ss_pred cCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHH
Q 020640 191 ITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILH 268 (323)
Q Consensus 191 ~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~ 268 (323)
........- ...++.+..++++. .+...++.++..+...+. .-..+++.|+.++.+ +++.++..++..|.
T Consensus 221 ~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s-~~~nvr~~~L~~L~ 292 (526)
T PF01602_consen 221 PMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSS-SDPNVRYIALDSLS 292 (526)
T ss_dssp SSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTS-SSHHHHHHHHHHHH
T ss_pred cCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhc-ccchhehhHHHHHH
Confidence 655433211 23555666666644 567777777777777655 222446778888874 33668888888888
Q ss_pred HhcccChHhHHHHHhhcccHHHHHHHhh-cCCHHHHHHHHHHHHHHhcc
Q 020640 269 TICLSDRTKWKAMREEESTHGTISKLAQ-DGTARAKRKATGILERLKRT 316 (323)
Q Consensus 269 ~L~~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~A~~~L~~l~~~ 316 (323)
.++...+. .+ . .....+..+. +++..++.++..+|..++..
T Consensus 293 ~l~~~~~~---~v-~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~ 334 (526)
T PF01602_consen 293 QLAQSNPP---AV-F---NQSLILFFLLYDDDPSIRKKALDLLYKLANE 334 (526)
T ss_dssp HHCCHCHH---HH-G---THHHHHHHHHCSSSHHHHHHHHHHHHHH--H
T ss_pred Hhhcccch---hh-h---hhhhhhheecCCCChhHHHHHHHHHhhcccc
Confidence 88877632 12 1 2222233444 66777777777777777653
No 42
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=1.4e-06 Score=83.81 Aligned_cols=215 Identities=16% Similarity=0.169 Sum_probs=170.9
Q ss_pred cCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcC--CHHHHHHHHHHHHHhc
Q 020640 72 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSG--TIETRSNAAAALFTLS 149 (323)
Q Consensus 72 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~--~~~~~~~a~~~L~~L~ 149 (323)
+..|+.|++-+.+ +.-.+-++.|+..|..+|. .+|..+... | ++.++..|+.. +++....+..++.++.
T Consensus 21 aETI~kLcDRves-----sTL~eDRR~A~rgLKa~sr--kYR~~Vga~-G-mk~li~vL~~D~~D~E~ik~~LdTl~il~ 91 (970)
T KOG0946|consen 21 AETIEKLCDRVES-----STLLEDRRDAVRGLKAFSR--KYREEVGAQ-G-MKPLIQVLQRDYMDPEIIKYALDTLLILT 91 (970)
T ss_pred HhHHHHHHHHHhh-----ccchhhHHHHHHHHHHHHH--HHHHHHHHc-c-cHHHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 3468888888875 4457789999999998875 577777775 4 78899999764 8999999999999997
Q ss_pred CCCC------c-h----------hhhh-ccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCC--chhHHHHhh-CchHHH
Q 020640 150 ALDS------N-K----------EVIG-KSGALKPLIDLLDEGHQSAMKDVASAIFNLCITH--ENKARAVRD-GGVSVI 208 (323)
Q Consensus 150 ~~~~------~-~----------~~i~-~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~--~~~~~i~~~-g~v~~L 208 (323)
.+++ + + ..+. ..+-|..|+..+...+-.++.+++..|.+|-... +.+..++.. -+|..|
T Consensus 92 ~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~l 171 (970)
T KOG0946|consen 92 SHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKL 171 (970)
T ss_pred hcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHH
Confidence 6653 1 1 2333 3788999999999999999999999999995544 455556655 799999
Q ss_pred HHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhccC---ChhHHHHHHHHHHHhcccChHhHHHHH
Q 020640 209 LKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIREST---CDRNKENCIAILHTICLSDRTKWKAMR 282 (323)
Q Consensus 209 v~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~~---~~~~~~~a~~~L~~L~~~~~~~~~~~~ 282 (323)
+.+|.+. .++..++-.|..+..+ +..++.++=+.+...|..++.... ..-+.+-|+..|.||-.++..+ ..++
T Consensus 172 mdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SN-Q~~F 250 (970)
T KOG0946|consen 172 MDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISN-QNFF 250 (970)
T ss_pred HHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcch-hhHH
Confidence 9999987 5788899999999996 555555555688999999997632 2357899999999999988654 5778
Q ss_pred hhcccHHHHHHHhh
Q 020640 283 EEESTHGTISKLAQ 296 (323)
Q Consensus 283 ~~~~~i~~L~~ll~ 296 (323)
++.+.++.|.+++.
T Consensus 251 rE~~~i~rL~klL~ 264 (970)
T KOG0946|consen 251 REGSYIPRLLKLLS 264 (970)
T ss_pred hccccHHHHHhhcC
Confidence 89999999998864
No 43
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.70 E-value=1.7e-06 Score=83.62 Aligned_cols=251 Identities=15% Similarity=0.181 Sum_probs=175.7
Q ss_pred HHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcccc
Q 020640 32 HFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD 110 (323)
Q Consensus 32 ~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~ 110 (323)
.++.+.+.+. .++.+|..|+.++.++...+++.- .. . .++.+.++|. +.++.++..|+.++..+...+
T Consensus 115 l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~---~~-~-~~~~l~~lL~------d~~~~V~~~a~~~l~~i~~~~ 183 (526)
T PF01602_consen 115 LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLV---ED-E-LIPKLKQLLS------DKDPSVVSAALSLLSEIKCND 183 (526)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCH---HG-G-HHHHHHHHTT------HSSHHHHHHHHHHHHHHHCTH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHH---HH-H-HHHHHhhhcc------CCcchhHHHHHHHHHHHccCc
Confidence 4555666664 668999999999999998776532 22 2 5888999997 778999999999999991111
Q ss_pred chhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhc
Q 020640 111 NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLC 190 (323)
Q Consensus 111 ~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~ 190 (323)
+....+.. .+++.|.+++...++-.+...++.+..++........- ...++.+..++++.++.+...+.+++..+.
T Consensus 184 ~~~~~~~~--~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~ 259 (526)
T PF01602_consen 184 DSYKSLIP--KLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLS 259 (526)
T ss_dssp HHHTTHHH--HHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred chhhhhHH--HHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence 11112222 14566666667889999999999999887654322211 457888999999888999999999999887
Q ss_pred cCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHH
Q 020640 191 ITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILH 268 (323)
Q Consensus 191 ~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~ 268 (323)
...+ .-..+++.|..++.++ +++..++..|..++... ...+. .....+..+..+++..++..++.+|.
T Consensus 260 ~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~ 329 (526)
T PF01602_consen 260 PSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAVF---NQSLILFFLLYDDDPSIRKKALDLLY 329 (526)
T ss_dssp SSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHHG---THHHHHHHHHCSSSHHHHHHHHHHHH
T ss_pred cchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhhh---hhhhhhheecCCCChhHHHHHHHHHh
Confidence 6555 3334778899999876 57888999999998843 22222 23334445553344889999999999
Q ss_pred HhcccChHhHHHHHhhcccHHHHHHHhhcC-CHHHHHHHHHHHHHHhc
Q 020640 269 TICLSDRTKWKAMREEESTHGTISKLAQDG-TARAKRKATGILERLKR 315 (323)
Q Consensus 269 ~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~A~~~L~~l~~ 315 (323)
.++... .... +++.|.+.+.+. ++..+..+...+..++.
T Consensus 330 ~l~~~~--n~~~------Il~eL~~~l~~~~d~~~~~~~i~~I~~la~ 369 (526)
T PF01602_consen 330 KLANES--NVKE------ILDELLKYLSELSDPDFRRELIKAIGDLAE 369 (526)
T ss_dssp HH--HH--HHHH------HHHHHHHHHHHC--HHHHHHHHHHHHHHHH
T ss_pred hccccc--chhh------HHHHHHHHHHhccchhhhhhHHHHHHHHHh
Confidence 998754 2333 456677777444 77788888888888774
No 44
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.69 E-value=2.2e-07 Score=70.81 Aligned_cols=147 Identities=16% Similarity=0.177 Sum_probs=119.4
Q ss_pred hHHHHHHHHhc--CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc
Q 020640 31 DHFLSLLKKMS--ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 108 (323)
Q Consensus 31 ~~i~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~ 108 (323)
+.++.||+... .+.+.+.+.+-.|.|++. +|-|...+.+ ..+++.+++-|. .+|..+.+.+...|+|++.
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrq-l~vLdlFvdsl~------e~ne~LvefgIgglCNlC~ 87 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQ-LDVLDLFVDSLE------EQNELLVEFGIGGLCNLCL 87 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHH-hhHHHHHHHHhh------cccHHHHHHhHHHHHhhcc
Confidence 68899999995 668889999999999996 6888999999 999999999999 6789999999999999999
Q ss_pred ccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-CchhhhhccCChHHHHHHhhhcCHhHHHHHHHHH
Q 020640 109 HDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAI 186 (323)
Q Consensus 109 ~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL 186 (323)
+.-+.+.|.+.+| +|.++..+.++...+.-.++.++..|+... ..+..+....++..+.++-.+.+.+.+..|-.+|
T Consensus 88 d~~n~~~I~ea~g-~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl 165 (173)
T KOG4646|consen 88 DKTNAKFIREALG-LPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFL 165 (173)
T ss_pred ChHHHHHHHHhcC-CceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999887 899999999999999999999999998654 3466666654555554444333444444444433
No 45
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.69 E-value=1.2e-06 Score=79.75 Aligned_cols=262 Identities=13% Similarity=0.092 Sum_probs=187.2
Q ss_pred hhHHHHHHHHhc-CC--chhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640 30 RDHFLSLLKKMS-AT--LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 106 (323)
Q Consensus 30 ~~~i~~Lv~~l~-~~--~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l 106 (323)
.|.+..|++++. .+ ..+|+++...|..+.. .+|+..+.. .| +..++++-+. .+.++.+...+.+|.++
T Consensus 179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~-~~-~~~Il~lAK~-----~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVAR-IG-LGVILNLAKE-----REPVELARSVAGILEHM 249 (832)
T ss_pred cchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhh-cc-chhhhhhhhh-----cCcHHHHHHHHHHHHHH
Confidence 467788999995 33 3468999999998874 567888887 55 6666666553 45789999999999999
Q ss_pred ccccc-hhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC--CchhhhhccCChHHHHHHhhhcCHhHHHHHH
Q 020640 107 SIHDN-NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD--SNKEVIGKSGALKPLIDLLDEGHQSAMKDVA 183 (323)
Q Consensus 107 s~~~~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al 183 (323)
.++.+ .+..+++.+| +..++..++..++.+..+++.+|.|.+.+. +.+..+++..+-+-|+.+..+.+.-.+.+|+
T Consensus 250 FKHSeet~~~Lvaa~~-lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC 328 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGG-LDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC 328 (832)
T ss_pred hhhhHHHHHHHHhhcc-cchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence 88777 5777777765 888888888889999999999999998654 5688889988888898888888888999999
Q ss_pred HHHHHhccCCchhHHHHhhCch---HHHHHHhhcCchHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHH
Q 020640 184 SAIFNLCITHENKARAVRDGGV---SVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNK 260 (323)
Q Consensus 184 ~aL~~L~~~~~~~~~i~~~g~v---~~Lv~ll~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~ 260 (323)
-+...|+.+.+....+-..|.+ ++++..++.+.....+ ....+++ ..+-++.|+.+|.+ .+..
T Consensus 329 lAV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~-------hd~aQG~----~~d~LqRLvPlLdS---~R~E 394 (832)
T KOG3678|consen 329 LAVAVLATNKEVEREVRKSGTLALVEPLVASLDPGRFARDA-------HDYAQGR----GPDDLQRLVPLLDS---NRLE 394 (832)
T ss_pred HHHhhhhhhhhhhHHHhhccchhhhhhhhhccCcchhhhhh-------hhhhccC----ChHHHHHhhhhhhc---chhh
Confidence 9999999888776666666544 4444444333222111 0001110 01237888888883 4444
Q ss_pred HHHHHHHHHhcccC----hHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640 261 ENCIAILHTICLSD----RTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 316 (323)
Q Consensus 261 ~~a~~~L~~L~~~~----~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 316 (323)
..++++++-.+... .++ -.++.+-|.|+.|-++..+.+....+.|..+|..+.+-
T Consensus 395 Aq~i~AF~l~~EAaIKs~Q~K-~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEE 453 (832)
T KOG3678|consen 395 AQCIGAFYLCAEAAIKSLQGK-TKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEE 453 (832)
T ss_pred hhhhHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccc
Confidence 44555544332211 111 23455679999999999988988899999999998763
No 46
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.67 E-value=1.5e-06 Score=82.14 Aligned_cols=142 Identities=10% Similarity=0.088 Sum_probs=113.0
Q ss_pred cCHhHHHHHHHHHHHhccCCc-hhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc-CHHHHHHHHhcCCHHHHHH
Q 020640 174 GHQSAMKDVASAIFNLCITHE-NKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLR 249 (323)
Q Consensus 174 ~~~~~~~~al~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~ 249 (323)
.+..++.+|+-++.++++.-. -+...-+..+..+|++++.++ .+...++++++|+.. ...-|..|+..|+|+.+..
T Consensus 389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s 468 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILES 468 (678)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHH
Confidence 467778888888887765432 222233446888999999887 578889999999998 5899999999999999999
Q ss_pred HHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640 250 IIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 316 (323)
Q Consensus 250 ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 316 (323)
++.+.+ ..++..+.++|+++.....+..+......=+...+..++.+.+..+++.+-.+|+||..-
T Consensus 469 ~~~~~~-~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 469 MLTDPD-FNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HhcCCC-chHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 999655 889999999999999988765444433334556677778888999999999999999864
No 47
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.63 E-value=3.4e-06 Score=79.73 Aligned_cols=217 Identities=17% Similarity=0.130 Sum_probs=144.1
Q ss_pred hhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHH---HHHHhcccc--chhhhhhccCCcHHHHHHHHhcCCHHH
Q 020640 63 SFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVIT---TLLNLSIHD--NNKKLVAETPMVIPLLMDALRSGTIET 137 (323)
Q Consensus 63 ~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~---~L~~ls~~~--~~~~~i~~~~g~i~~Lv~ll~~~~~~~ 137 (323)
.++...++ ...++.+++++.....-.+.+++.+.-++. .+..++... ++++.+.+.. +...+.......+.+.
T Consensus 316 klq~~~~e-~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~-t~~~l~~~~~~kd~~~ 393 (678)
T KOG1293|consen 316 KLQLPQHE-EATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETT-TESHLMCLPPIKDHDF 393 (678)
T ss_pred hhhhHHhh-hhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHH-HHHHHccccccccHHH
Confidence 34556666 677888888886421000222332222222 111222222 2344444432 2333333334557788
Q ss_pred HHHHHHHHHHhcCCCC-chhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCC-chhHHHHhhCchHHHHHHhhcC
Q 020640 138 RSNAAAALFTLSALDS-NKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVILKKIMDG 215 (323)
Q Consensus 138 ~~~a~~~L~~L~~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~ 215 (323)
...++-.+.+++..-. -+..+-...+..+|++++..++..+...++++|.||.... +-+..+++.|+|..+..++.+.
T Consensus 394 ~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~ 473 (678)
T KOG1293|consen 394 VAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDP 473 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCC
Confidence 8888888888764322 2333555779999999999999999999999999998865 6788899999999999999876
Q ss_pred --chHHHHHHHHHHHhcCHHH--HHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHH
Q 020640 216 --VHVDELLAILAMLSTNHRA--VEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMR 282 (323)
Q Consensus 216 --~~~~~a~~~L~~l~~~~~~--~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 282 (323)
..+..++|+|+++..+.+. +.+....=..+.++.+..+. +..+|+.+...|.||+++..+...-++
T Consensus 474 ~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~-d~~Vqeq~fqllRNl~c~~~~svdfll 543 (678)
T KOG1293|consen 474 DFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDP-DWAVQEQCFQLLRNLTCNSRKSVDFLL 543 (678)
T ss_pred CchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCC-CHHHHHHHHHHHHHhhcCcHHHHHHHH
Confidence 7899999999999996433 33333332356667777754 499999999999999998654443333
No 48
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.56 E-value=1.5e-05 Score=73.21 Aligned_cols=255 Identities=12% Similarity=0.104 Sum_probs=180.0
Q ss_pred HhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcC--C
Q 020640 57 LTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSG--T 134 (323)
Q Consensus 57 l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~--~ 134 (323)
+-+..+..+..+.- ....+.+..++- +++.+++..+..+++.+..+.+.-..+.+.+ .--.++..|..+ +
T Consensus 10 l~~~~p~l~~~~~~-~~~~~~i~~~lL------~~~~~vraa~yRilRy~i~d~~~l~~~~~l~-id~~ii~SL~~~~~~ 81 (371)
T PF14664_consen 10 LLKRHPTLKYDLVL-SFFGERIQCMLL------SDSKEVRAAGYRILRYLISDEESLQILLKLH-IDIFIIRSLDRDNKN 81 (371)
T ss_pred HHHhCchhhhhhhH-HHHHHHHHHHHC------CCcHHHHHHHHHHHHHHHcCHHHHHHHHHcC-CchhhHhhhcccCCC
Confidence 33344444444443 334455554444 3458999999999999888888888888765 344566666543 5
Q ss_pred HHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhc
Q 020640 135 IETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMD 214 (323)
Q Consensus 135 ~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~ 214 (323)
..-+++|.+.++.+....++... ...|++..++.+....++..+..|+.+|..++..++ ..+.+.||+..|++.+.+
T Consensus 82 ~~ER~QALkliR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d 158 (371)
T PF14664_consen 82 DVEREQALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALID 158 (371)
T ss_pred hHHHHHHHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHh
Confidence 66788999999998765443333 356789999999999999999999999999987654 445678999999999988
Q ss_pred C--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhcc-----C-Ch--hHHHHHHHHHHHhcccChHhHHHHHhh
Q 020640 215 G--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRES-----T-CD--RNKENCIAILHTICLSDRTKWKAMREE 284 (323)
Q Consensus 215 ~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~-----~-~~--~~~~~a~~~L~~L~~~~~~~~~~~~~~ 284 (323)
+ ...+..+.++..+-..|..|+.+...--++.+..-+.+. . +. ..-..+..++..+-..=++...--..+
T Consensus 159 ~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~ 238 (371)
T PF14664_consen 159 GSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMND 238 (371)
T ss_pred ccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCC
Confidence 6 677888999999999999999887533355565555433 1 12 234456666666655544432222223
Q ss_pred cccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchhhccC
Q 020640 285 ESTHGTISKLAQDGTARAKRKATGILERLKRTVNLTHT 322 (323)
Q Consensus 285 ~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~ 322 (323)
..++..|+..++.+++++++.-..++.-+-+..+..|+
T Consensus 239 ~~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p~w~ 276 (371)
T PF14664_consen 239 FRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPSWT 276 (371)
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcc
Confidence 36889999999999999999988888888877666664
No 49
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.55 E-value=4.7e-07 Score=69.09 Aligned_cols=129 Identities=16% Similarity=0.163 Sum_probs=109.4
Q ss_pred HHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCc
Q 020640 75 IPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN 154 (323)
Q Consensus 75 i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~ 154 (323)
+..|++-..+ ..+.+.++..+.-|.|++.++.|...+.+.. ++...+..|..+++...+.+++.|+|+|.+..|
T Consensus 18 lq~LV~efq~-----tt~~eakeqv~ANLANFAYDP~Nys~Lrql~-vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n 91 (173)
T KOG4646|consen 18 LQHLVDEFQT-----TTNIEAKEQVTANLANFAYDPINYSHLRQLD-VLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTN 91 (173)
T ss_pred HHHHHHHHHH-----hccHHHHHHHHHHHHhhccCcchHHHHHHhh-HHHHHHHHhhcccHHHHHHhHHHHHhhccChHH
Confidence 4445554443 5578999999999999999999999998875 899999999999999999999999999999999
Q ss_pred hhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCC-chhHHHHhhCchHHHH
Q 020640 155 KEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVIL 209 (323)
Q Consensus 155 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~-~~~~~i~~~g~v~~Lv 209 (323)
++.|.+.++++..+..+.++...+...++.++..|+... ..+..+..-.++..+.
T Consensus 92 ~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~ 147 (173)
T KOG4646|consen 92 AKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQ 147 (173)
T ss_pred HHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHH
Confidence 999999999999999999999999999999999999876 4566665543343333
No 50
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=3.8e-05 Score=77.06 Aligned_cols=261 Identities=16% Similarity=0.138 Sum_probs=169.2
Q ss_pred chhHHHHHHHHHHHhccChhhHHHHhhhcC--CHHHHHHhhccccc------C---CCC-CHHHHHHHHHHHHHhccccc
Q 020640 44 LPDQTEAAKELRLLTKRMPSFRALFGESHD--AIPQLLSPLSESKC------E---NGI-NPNLQEDVITTLLNLSIHDN 111 (323)
Q Consensus 44 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g--~i~~Lv~lL~~~~~------~---~~~-~~~~~~~a~~~L~~ls~~~~ 111 (323)
..+|..|+..|..++..-+..++.... .| .++.++.++..... + +.+ ...--..|.++|-.+|.+-.
T Consensus 263 ~~~R~~ALe~ivs~~e~Ap~~~k~~~~-~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~ 341 (1075)
T KOG2171|consen 263 NSIRHLALEFLVSLSEYAPAMCKKLAL-LGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLG 341 (1075)
T ss_pred HHHHHHHHHHHHHHHHhhHHHhhhchh-hhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCC
Confidence 557888999999888765544443333 22 45555555543211 0 011 12345667777877776544
Q ss_pred hhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhc-cCChHHHHHHhhhcCHhHHHHHHHHHHHhc
Q 020640 112 NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK-SGALKPLIDLLDEGHQSAMKDVASAIFNLC 190 (323)
Q Consensus 112 ~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~ 190 (323)
.+..+- . +.+.+-.++++.+..-+..++.+|..++..-. +..... ..+++..+..|.++++.++..|+.++..++
T Consensus 342 g~~v~p--~-~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~-~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~s 417 (1075)
T KOG2171|consen 342 GKQVLP--P-LFEALEAMLQSTEWKERHAALLALSVIAEGCS-DVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMS 417 (1075)
T ss_pred hhhehH--H-HHHHHHHHhcCCCHHHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhh
Confidence 333222 1 46667788899999999999999998875322 122222 557888888899999999999999999998
Q ss_pred cCC-chhHHHHhhCchHHHHHHhhcC---chHHHHHHHHHHHhcCHHHHHHHHh---cCCHHHHHHHHhccCChhHHHHH
Q 020640 191 ITH-ENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHRAVEEIGD---LGGVSCMLRIIRESTCDRNKENC 263 (323)
Q Consensus 191 ~~~-~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~~~~~~~i~~---~g~i~~Lv~ll~~~~~~~~~~~a 263 (323)
.+- +.-..--.+-.++.|+..+.+. .++..|+.+|-|.+... -..+++ -+.+.+++.++..++.+.+++.+
T Consensus 418 tdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~--~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~v 495 (1075)
T KOG2171|consen 418 TDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEEC--DKSILEPYLDGLMEKKLLLLLQSSKPYVQEQA 495 (1075)
T ss_pred hhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHhcCCchhHHHHH
Confidence 765 3334444445677888888865 56777888888777631 111221 24566555566555559999999
Q ss_pred HHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCC-HH---HHHHHHHHHHHH
Q 020640 264 IAILHTICLSDRTKWKAMREEESTHGTISKLAQDGT-AR---AKRKATGILERL 313 (323)
Q Consensus 264 ~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~---~~~~A~~~L~~l 313 (323)
+.++...+.........-. ...++.|.+++++.+ ++ .+-|....+..+
T Consensus 496 vtaIasvA~AA~~~F~pY~--d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli 547 (1075)
T KOG2171|consen 496 VTAIASVADAAQEKFIPYF--DRLMPLLKNFLQNADDKDLRELRGKTMECLSLI 547 (1075)
T ss_pred HHHHHHHHHHHhhhhHhHH--HHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHH
Confidence 9999999887655444443 468899999998875 33 344444444443
No 51
>PF05536 Neurochondrin: Neurochondrin
Probab=98.51 E-value=1.5e-05 Score=76.81 Aligned_cols=240 Identities=13% Similarity=0.098 Sum_probs=169.1
Q ss_pred CHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccc----hhhhhhccCCcHHHHHHHHhc-------CCHHHHHHHH
Q 020640 74 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN----NKKLVAETPMVIPLLMDALRS-------GTIETRSNAA 142 (323)
Q Consensus 74 ~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~----~~~~i~~~~g~i~~Lv~ll~~-------~~~~~~~~a~ 142 (323)
.++..+.+|+ +.+.+-+-.++..+.++....+ .++.+.+.-| .+.+-++|++ +....+.-++
T Consensus 6 ~l~~c~~lL~------~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig-~~Fl~RLL~t~~~~~~~~~~~~~~Lav 78 (543)
T PF05536_consen 6 SLEKCLSLLK------SADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIG-FKFLDRLLRTGSVPSDCPPEEYLSLAV 78 (543)
T ss_pred HHHHHHHHhc------cCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcC-hhHHHHHhcCCCCCCCCCHHHHHHHHH
Confidence 4677888888 5555667777777888876655 2445777666 7889999987 3466778899
Q ss_pred HHHHHhcCCCCchhhhhccCChHHHHHHhhhcCH-hHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC-chHHH
Q 020640 143 AALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQ-SAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG-VHVDE 220 (323)
Q Consensus 143 ~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~-~~~~~ 220 (323)
.+|..++..++.+..---.+-||.|++.+...+. .+...|+.+|..++.+++++..+++.|+++.|.+.+.++ ...+.
T Consensus 79 svL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~~~~E~ 158 (543)
T PF05536_consen 79 SVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQSFQMEI 158 (543)
T ss_pred HHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCcchHHH
Confidence 9999999866643222223469999999988766 999999999999999999999999999999999999876 67899
Q ss_pred HHHHHHHHhcCHHHHHHHHhc----CCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhc----ccHHHHH
Q 020640 221 LLAILAMLSTNHRAVEEIGDL----GGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEE----STHGTIS 292 (323)
Q Consensus 221 a~~~L~~l~~~~~~~~~i~~~----g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~----~~i~~L~ 292 (323)
++.++.+++........--.. .+++.+-..+...+ ...+...+..|..+-...+.......... .....|.
T Consensus 159 Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~-~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~ 237 (543)
T PF05536_consen 159 ALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFH-GEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLR 237 (543)
T ss_pred HHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHH
Confidence 999999988753211111111 23455555554333 56678888888888776631100111122 3444555
Q ss_pred HHhhcC-CHHHHHHHHHHHHHHhcchhhcc
Q 020640 293 KLAQDG-TARAKRKATGILERLKRTVNLTH 321 (323)
Q Consensus 293 ~ll~~~-~~~~~~~A~~~L~~l~~~~~~~~ 321 (323)
.++++. ++.-+..|..+...|.+.-...|
T Consensus 238 ~iL~sr~~~~~R~~al~Laa~Ll~~~G~~w 267 (543)
T PF05536_consen 238 DILQSRLTPSQRDPALNLAASLLDLLGPEW 267 (543)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHhChHh
Confidence 566666 78888888888888877655554
No 52
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=5.9e-06 Score=71.67 Aligned_cols=233 Identities=15% Similarity=0.180 Sum_probs=158.7
Q ss_pred HHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCc
Q 020640 75 IPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN 154 (323)
Q Consensus 75 i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~ 154 (323)
...++.+|. +.+|.++..|+..+..++.. ..+...-.....++.+.++++...+ .+.|+.+|.|++.....
T Consensus 5 l~elv~ll~------~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l 75 (353)
T KOG2973|consen 5 LVELVELLH------SLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEEL 75 (353)
T ss_pred HHHHHHHhc------cCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHH
Confidence 346788888 77899999999999988766 2222222223346667777776655 77899999999999888
Q ss_pred hhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhh------CchHHHHHHhhcC--c---hHHHHHH
Q 020640 155 KEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRD------GGVSVILKKIMDG--V---HVDELLA 223 (323)
Q Consensus 155 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~------g~v~~Lv~ll~~~--~---~~~~a~~ 223 (323)
++.+.+. .+..+++.+.++....-...+.+|.||+..++....+... .++..++....+. . .-...+-
T Consensus 76 ~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~ 154 (353)
T KOG2973|consen 76 RKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAP 154 (353)
T ss_pred HHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHH
Confidence 8888887 7888888888876778888999999999998766655321 3444455444433 2 2355678
Q ss_pred HHHHHhcCHHHHHHHHhcCC--HHHHHHHHhccCChhH-HHHHHHHHHHhcccChHhHHHHHh-hcccHHHHH-------
Q 020640 224 ILAMLSTNHRAVEEIGDLGG--VSCMLRIIRESTCDRN-KENCIAILHTICLSDRTKWKAMRE-EESTHGTIS------- 292 (323)
Q Consensus 224 ~L~~l~~~~~~~~~i~~~g~--i~~Lv~ll~~~~~~~~-~~~a~~~L~~L~~~~~~~~~~~~~-~~~~i~~L~------- 292 (323)
+++||+..+.+|..+.+... ++.++.+-. .+ ..+ +...+++|.|+|.+.+.+ ..++. +....+.|+
T Consensus 155 vf~nls~~~~gR~l~~~~k~~p~~kll~ft~-~~-s~vRr~GvagtlkN~cFd~~~h-~~lL~e~~~lLp~iLlPlagpe 231 (353)
T KOG2973|consen 155 VFANLSQFEAGRKLLLEPKRFPDQKLLPFTS-ED-SQVRRGGVAGTLKNCCFDAKLH-EVLLDESINLLPAILLPLAGPE 231 (353)
T ss_pred HHHHHhhhhhhhhHhcchhhhhHhhhhcccc-cc-hhhhccchHHHHHhhhccchhH-HHHhcchHHHHHHHHhhcCCcc
Confidence 89999999999999987663 333333333 23 444 556999999998887643 23332 112222221
Q ss_pred --------------HHh-----hcCCHHHHHHHHHHHHHHhcchhhc
Q 020640 293 --------------KLA-----QDGTARAKRKATGILERLKRTVNLT 320 (323)
Q Consensus 293 --------------~ll-----~~~~~~~~~~A~~~L~~l~~~~~~~ 320 (323)
+.+ ...++.+++.-..+|-.||.....+
T Consensus 232 e~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GR 278 (353)
T KOG2973|consen 232 ELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGR 278 (353)
T ss_pred ccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhH
Confidence 112 1236888888888888888766554
No 53
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=6.3e-05 Score=75.55 Aligned_cols=258 Identities=15% Similarity=0.158 Sum_probs=179.7
Q ss_pred HHHHHHHHh-cCCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc-
Q 020640 32 HFLSLLKKM-SATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH- 109 (323)
Q Consensus 32 ~i~~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~- 109 (323)
.+..|+..| +.|-++|.+|-..+.+..... ...+.|..++.+ +.+++++..|+-.++.+...
T Consensus 5 ~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~-----------~~l~~L~~i~~~-----~~~p~~Rq~aaVl~Rkl~~~~ 68 (1075)
T KOG2171|consen 5 PLEQLLQQLLSPDNEVRRQAEEALETLAKTE-----------PLLPALAHILAT-----SADPQVRQLAAVLLRKLLTKH 68 (1075)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhhccc-----------chHHHHHHHHhc-----CCChHHHHHHHHHHHHHHHHH
Confidence 455666666 566778999999998888642 267888888886 67899999999999887532
Q ss_pred -----cchhhhhhccCCcHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCCCchhhhhc-cCChHHHHHHhhhcCHhHHHHH
Q 020640 110 -----DNNKKLVAETPMVIPLLMDALRS-GTIETRSNAAAALFTLSALDSNKEVIGK-SGALKPLIDLLDEGHQSAMKDV 182 (323)
Q Consensus 110 -----~~~~~~i~~~~g~i~~Lv~ll~~-~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a 182 (323)
.+.+..|- ..|+..+.+ ..+.++...+.++..++.+.-.. + .+.++.|++..+++++..++.|
T Consensus 69 w~~l~~e~~~sik------s~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e----~WPell~~L~q~~~S~~~~~rE~a 138 (1075)
T KOG2171|consen 69 WSRLSAEVQQSIK------SSLLEIIQSETEPSVRHKLADVIAEIARNDLPE----KWPELLQFLFQSTKSPNPSLRESA 138 (1075)
T ss_pred hhcCCHHHHHHHH------HHHHHHHHhccchHHHHHHHHHHHHHHHhcccc----chHHHHHHHHHHhcCCCcchhHHH
Confidence 22333332 234445444 46788888999999998654222 3 5677777777888999999999
Q ss_pred HHHHHHhccCCchhHH-HHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCH-HHHHHHHhc-CCHHHHHHHHhc----
Q 020640 183 ASAIFNLCITHENKAR-AVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNH-RAVEEIGDL-GGVSCMLRIIRE---- 253 (323)
Q Consensus 183 l~aL~~L~~~~~~~~~-i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~-~~~~~i~~~-g~i~~Lv~ll~~---- 253 (323)
+..|+.+...-.+... .+.. ..+.+.+-|.++ .++..+++++..++..- .++...-.. ..+|.++..+..
T Consensus 139 l~il~s~~~~~~~~~~~~~~~-l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~ 217 (1075)
T KOG2171|consen 139 LLILSSLPETFGNTLQPHLDD-LLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQD 217 (1075)
T ss_pred HHHHHhhhhhhccccchhHHH-HHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhc
Confidence 9999999765544332 1111 333444444444 57888999988888753 233333222 456766666654
Q ss_pred cCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcC--CHHHHHHHHHHHHHHhcchhh
Q 020640 254 STCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG--TARAKRKATGILERLKRTVNL 319 (323)
Q Consensus 254 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~A~~~L~~l~~~~~~ 319 (323)
++ ++.-..+..+|-.+....+...+..+. .+++.-.++..+. ++.++..|...|-.+.++++.
T Consensus 218 ~d-~~~a~~~l~~l~El~e~~pk~l~~~l~--~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~ 282 (1075)
T KOG2171|consen 218 GD-DDAAKSALEALIELLESEPKLLRPHLS--QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPA 282 (1075)
T ss_pred cc-hHHHHHHHHHHHHHHhhchHHHHHHHH--HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHH
Confidence 33 556678889999999988877777764 5777778887776 799999999999999888654
No 54
>PF05536 Neurochondrin: Neurochondrin
Probab=98.40 E-value=6.3e-05 Score=72.62 Aligned_cols=238 Identities=14% Similarity=0.086 Sum_probs=166.0
Q ss_pred hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhh---HHHHhhhcCCHHHHHHhhcccccCC-CCCHHHHHHHHHHHHH
Q 020640 31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSF---RALFGESHDAIPQLLSPLSESKCEN-GINPNLQEDVITTLLN 105 (323)
Q Consensus 31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~---~~~i~~~~g~i~~Lv~lL~~~~~~~-~~~~~~~~~a~~~L~~ 105 (323)
..+...+++|+ .+...|-.++..+.++.+.++.. ++.+.+ +=+..-|-++|+++.... .+....+.-|+.+|..
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~-aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~ 83 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFE-AIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA 83 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHH-hcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 47888999996 44456778999999999876643 345777 667888889998754311 1346788889999999
Q ss_pred hccccch--hhhhhccCCcHHHHHHHHhcCCH-HHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHH
Q 020640 106 LSIHDNN--KKLVAETPMVIPLLMDALRSGTI-ETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDV 182 (323)
Q Consensus 106 ls~~~~~--~~~i~~~~g~i~~Lv~ll~~~~~-~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a 182 (323)
++.+++. -..++. .+|.|++++...+. .+...+..+|..++.+++.+..+.+.|+++.|++.+.+ .+.....+
T Consensus 84 f~~~~~~a~~~~~~~---~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~A 159 (543)
T PF05536_consen 84 FCRDPELASSPQMVS---RIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIA 159 (543)
T ss_pred HcCChhhhcCHHHHH---HHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHH
Confidence 9987773 455654 49999999988776 99999999999999999999999999999999999988 55678889
Q ss_pred HHHHHHhccCCchhHHHHhh----CchHHHHHHhhcC--chHHHHHHHHHHHhcCHHH--HHHH----HhcCCHHHHHHH
Q 020640 183 ASAIFNLCITHENKARAVRD----GGVSVILKKIMDG--VHVDELLAILAMLSTNHRA--VEEI----GDLGGVSCMLRI 250 (323)
Q Consensus 183 l~aL~~L~~~~~~~~~i~~~----g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~--~~~i----~~~g~i~~Lv~l 250 (323)
+.+|.+++...+....--.. ..++.+-..+... ..+...+..|.++-...+. .... +-..+...|..+
T Consensus 160 l~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~i 239 (543)
T PF05536_consen 160 LNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDI 239 (543)
T ss_pred HHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHH
Confidence 99998886654421110111 2334444444432 5677778888877664321 1111 112245556667
Q ss_pred HhccCChhHHHHHHHHHHHhccc
Q 020640 251 IRESTCDRNKENCIAILHTICLS 273 (323)
Q Consensus 251 l~~~~~~~~~~~a~~~L~~L~~~ 273 (323)
+++...+..+..+..+...|...
T Consensus 240 L~sr~~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 240 LQSRLTPSQRDPALNLAASLLDL 262 (543)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHH
Confidence 76554466666776666666554
No 55
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=1.6e-05 Score=75.40 Aligned_cols=279 Identities=13% Similarity=0.071 Sum_probs=183.3
Q ss_pred hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHH-Hhh--hcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640 31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRAL-FGE--SHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 106 (323)
Q Consensus 31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~-i~~--~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l 106 (323)
..+|.|.++|. .+..+++-|..+|.+++.++.+.-.. +.+ ..-.+|.++++.+ ++++.++..|+..+..+
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~------h~spkiRs~A~~cvNq~ 201 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFK------HPSPKIRSHAVGCVNQF 201 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHh------CCChhHHHHHHhhhhhe
Confidence 57888999995 56778899999999999876643222 111 0125788888888 67899999999887654
Q ss_pred ccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHH
Q 020640 107 SIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAI 186 (323)
Q Consensus 107 s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL 186 (323)
-. ..++..+...+.+++.+..+-.++++++++..|.++..|......+-.=.-.++++.++..-++.+..+...|+...
T Consensus 202 i~-~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFw 280 (885)
T KOG2023|consen 202 II-IQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFW 280 (885)
T ss_pred ee-cCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHH
Confidence 32 22344444444467777777778899999999999999975443322222256788888888888889999999999
Q ss_pred HHhccCCchhHHHHhh--CchHHHHHHhhcC---------------------ch-------HHHHHH-------------
Q 020640 187 FNLCITHENKARAVRD--GGVSVILKKIMDG---------------------VH-------VDELLA------------- 223 (323)
Q Consensus 187 ~~L~~~~~~~~~i~~~--g~v~~Lv~ll~~~---------------------~~-------~~~a~~------------- 223 (323)
..++..+-.+..+... ..+|.|++-|.-. ++ +....+
T Consensus 281 la~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~ 360 (885)
T KOG2023|consen 281 LALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDED 360 (885)
T ss_pred HHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccc
Confidence 9999888555444432 5666666533200 00 000000
Q ss_pred ------HHHHHhcCH----HHHHHHHhcCCHHHHHHHHhc--cC-ChhHHHHHHHHHHHhcccChHhHHHHHhh-cccHH
Q 020640 224 ------ILAMLSTNH----RAVEEIGDLGGVSCMLRIIRE--ST-CDRNKENCIAILHTICLSDRTKWKAMREE-ESTHG 289 (323)
Q Consensus 224 ------~L~~l~~~~----~~~~~i~~~g~i~~Lv~ll~~--~~-~~~~~~~a~~~L~~L~~~~~~~~~~~~~~-~~~i~ 289 (323)
.=+||=++. +.-.-+.....++.+..+++. ++ .=.+|+.++.+|..++.+- ..-++.. ...++
T Consensus 361 DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGc---M~g~~p~LpeLip 437 (885)
T KOG2023|consen 361 DDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGC---MQGFVPHLPELIP 437 (885)
T ss_pred ccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHH---hhhcccchHHHHH
Confidence 112332222 222224444566777777764 22 2346888888888887643 2233211 24788
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHhcchhh
Q 020640 290 TISKLAQDGTARAKRKATGILERLKRTVNL 319 (323)
Q Consensus 290 ~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~ 319 (323)
.|+.++.+..+-++.-++|.|...+.+...
T Consensus 438 ~l~~~L~DKkplVRsITCWTLsRys~wv~~ 467 (885)
T KOG2023|consen 438 FLLSLLDDKKPLVRSITCWTLSRYSKWVVQ 467 (885)
T ss_pred HHHHHhccCccceeeeeeeeHhhhhhhHhc
Confidence 889999999999999999999998876543
No 56
>PTZ00429 beta-adaptin; Provisional
Probab=98.31 E-value=0.00047 Score=68.73 Aligned_cols=208 Identities=13% Similarity=0.095 Sum_probs=137.6
Q ss_pred CCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHH
Q 020640 90 GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLID 169 (323)
Q Consensus 90 ~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ 169 (323)
++|+.++-.|+.+|.++-. ..+.+. +++.+.+.+.+.++.+++.|+-++..+-..+. ..+.+.|.++.|.+
T Consensus 116 d~Np~IRaLALRtLs~Ir~-----~~i~e~--l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~ 186 (746)
T PTZ00429 116 NSSPVVRALAVRTMMCIRV-----SSVLEY--TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVE 186 (746)
T ss_pred CCCHHHHHHHHHHHHcCCc-----HHHHHH--HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHH
Confidence 6678888888887776632 223332 45567778888999999999999999865333 23345778899999
Q ss_pred HhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcCc--hHHHHHHHHHHHhcCHHHHHHHHhcCCHHHH
Q 020640 170 LLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGV--HVDELLAILAMLSTNHRAVEEIGDLGGVSCM 247 (323)
Q Consensus 170 lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~--~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L 247 (323)
+|.+.++.+..+|+.+|..+...++....+ ..+.+..|+..+.+-+ .+...+.+|... .|+..... ...+..+
T Consensus 187 LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l-~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y--~P~~~~e~--~~il~~l 261 (746)
T PTZ00429 187 LLNDNNPVVASNAAAIVCEVNDYGSEKIES-SNEWVNRLVYHLPECNEWGQLYILELLAAQ--RPSDKESA--ETLLTRV 261 (746)
T ss_pred HhcCCCccHHHHHHHHHHHHHHhCchhhHH-HHHHHHHHHHHhhcCChHHHHHHHHHHHhc--CCCCcHHH--HHHHHHH
Confidence 999999999999999999998765433222 2345666777665432 234444444332 12222211 2456777
Q ss_pred HHHHhccCChhHHHHHHHHHHHhcccC-hHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640 248 LRIIRESTCDRNKENCIAILHTICLSD-RTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 315 (323)
Q Consensus 248 v~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 315 (323)
...+++. ++-+...|++++.++.... +...+.... ....+|+.+ .+++++++.-+..-+..+..
T Consensus 262 ~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~~--rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~ 326 (746)
T PTZ00429 262 LPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCTV--RVNTALLTL-SRRDAETQYIVCKNIHALLV 326 (746)
T ss_pred HHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHHH--HHHHHHHHh-hCCCccHHHHHHHHHHHHHH
Confidence 7778865 4889999999999988653 232333321 344666766 45678888888777766654
No 57
>PTZ00429 beta-adaptin; Provisional
Probab=98.30 E-value=0.00039 Score=69.26 Aligned_cols=253 Identities=11% Similarity=0.065 Sum_probs=172.6
Q ss_pred hhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc
Q 020640 30 RDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 108 (323)
Q Consensus 30 ~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~ 108 (323)
.|-+..|-+.|. .+...+.+|++.+........+.-. ..+.+++++. +++.+++.-..-.+.+.+.
T Consensus 31 kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS~-------LF~dVvk~~~------S~d~elKKLvYLYL~~ya~ 97 (746)
T PTZ00429 31 RGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVSY-------LFVDVVKLAP------STDLELKKLVYLYVLSTAR 97 (746)
T ss_pred cchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCchH-------HHHHHHHHhC------CCCHHHHHHHHHHHHHHcc
Confidence 456677777885 4556677777755554434444433 3444677777 7788999888888888876
Q ss_pred ccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHH
Q 020640 109 HDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFN 188 (323)
Q Consensus 109 ~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~ 188 (323)
.+.....+ ++..+.+-+.++++.++..|++++.++-.. .+.+ -.++.+.+.+.+.++-+++.|+-++..
T Consensus 98 ~~pelalL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~-----~i~e-~l~~~lkk~L~D~~pYVRKtAalai~K 166 (746)
T PTZ00429 98 LQPEKALL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRVS-----SVLE-YTLEPLRRAVADPDPYVRKTAAMGLGK 166 (746)
T ss_pred cChHHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcH-----HHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 44332222 244566777888999999999999887441 1222 246667777888899999999999999
Q ss_pred hccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHH
Q 020640 189 LCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAI 266 (323)
Q Consensus 189 L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~ 266 (323)
+-..++. .+.+.|.++.|.++|.+. .+..+|+.+|..+......+ .-...+.+..|+..+.+.+ +..|...+.+
T Consensus 167 ly~~~pe--lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~-l~l~~~~~~~Ll~~L~e~~-EW~Qi~IL~l 242 (746)
T PTZ00429 167 LFHDDMQ--LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK-IESSNEWVNRLVYHLPECN-EWGQLYILEL 242 (746)
T ss_pred HHhhCcc--cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh-hHHHHHHHHHHHHHhhcCC-hHHHHHHHHH
Confidence 8654442 234557888999999876 67899999999998642221 2233455777888887544 7778877777
Q ss_pred HHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640 267 LHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 316 (323)
Q Consensus 267 L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 316 (323)
|....-.+. .+. ..++..+...+++.++.+.-.|++++-.+..+
T Consensus 243 L~~y~P~~~---~e~---~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 243 LAAQRPSDK---ESA---ETLLTRVLPRMSHQNPAVVMGAIKVVANLASR 286 (746)
T ss_pred HHhcCCCCc---HHH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence 755322221 122 25777888888888999988888888877643
No 58
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.21 E-value=0.00066 Score=62.46 Aligned_cols=275 Identities=13% Similarity=0.102 Sum_probs=171.6
Q ss_pred HHHHHHHHh-cCCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcccc
Q 020640 32 HFLSLLKKM-SATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD 110 (323)
Q Consensus 32 ~i~~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~ 110 (323)
..+.+..++ .++.++|-.+.+.++.+.. +++.-..+.+ .+.=--++.-|... ..+..-++.|++.++.+....
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~-l~id~~ii~SL~~~----~~~~~ER~QALkliR~~l~~~ 99 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLK-LHIDIFIIRSLDRD----NKNDVEREQALKLIRAFLEIK 99 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHH-cCCchhhHhhhccc----CCChHHHHHHHHHHHHHHHhc
Confidence 334444344 5668889999999999995 5667777777 66444455556533 345667899999998876554
Q ss_pred chhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhc
Q 020640 111 NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLC 190 (323)
Q Consensus 111 ~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~ 190 (323)
.....+- .|++..++.+..+.++..+..|..+|..++..+ -..+..+||+..|++.+.++..+.....+.++-.+-
T Consensus 100 ~~~~~~~--~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lL 175 (371)
T PF14664_consen 100 KGPKEIP--RGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSFSISESLLDTLLYLL 175 (371)
T ss_pred CCcccCC--HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHh
Confidence 4444443 358999999999999999999999999998643 234567999999999998877678888888888888
Q ss_pred cCCchhHHHHhhCchHHHHHHhhcC--------c-h--HHHHHHHHHHHhcCHHHHHHHHhc--CCHHHHHHHHhccCCh
Q 020640 191 ITHENKARAVRDGGVSVILKKIMDG--------V-H--VDELLAILAMLSTNHRAVEEIGDL--GGVSCMLRIIRESTCD 257 (323)
Q Consensus 191 ~~~~~~~~i~~~g~v~~Lv~ll~~~--------~-~--~~~a~~~L~~l~~~~~~~~~i~~~--g~i~~Lv~ll~~~~~~ 257 (323)
..+..|..+...--++.++.-+.+. . . -..+..++..+-..=.+--.+... .+++.|+..|.... +
T Consensus 176 d~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~-~ 254 (371)
T PF14664_consen 176 DSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPN-P 254 (371)
T ss_pred CCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCC-H
Confidence 7777776554322233333333221 1 1 112222222222211111111111 23444444444322 4
Q ss_pred hHHHHHHHHHHHh------------------------------c---------------------ccChHhHHHHHhhcc
Q 020640 258 RNKENCIAILHTI------------------------------C---------------------LSDRTKWKAMREEES 286 (323)
Q Consensus 258 ~~~~~a~~~L~~L------------------------------~---------------------~~~~~~~~~~~~~~~ 286 (323)
+++.....++..+ . .+.-...-.++.+.|
T Consensus 255 ~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~g 334 (371)
T PF14664_consen 255 EIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAG 334 (371)
T ss_pred HHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcC
Confidence 4444444444433 1 000011112344899
Q ss_pred cHHHHHHHhhcC-CHHHHHHHHHHHHHHhcch
Q 020640 287 THGTISKLAQDG-TARAKRKATGILERLKRTV 317 (323)
Q Consensus 287 ~i~~L~~ll~~~-~~~~~~~A~~~L~~l~~~~ 317 (323)
.++.|++++.+. ++.+..||.-+|..+...+
T Consensus 335 L~~~L~~li~~~~d~~l~~KAtlLL~elL~la 366 (371)
T PF14664_consen 335 LLEALVELIESSEDSSLSRKATLLLGELLHLA 366 (371)
T ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence 999999999888 8999999999998876543
No 59
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.20 E-value=3.2e-06 Score=51.71 Aligned_cols=41 Identities=12% Similarity=0.284 Sum_probs=37.2
Q ss_pred CHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcc
Q 020640 231 NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICL 272 (323)
Q Consensus 231 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~ 272 (323)
+++++..+++.|+++.|+++|++++ +.+++.|+++|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~-~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPD-PEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSS-HHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCC-HHHHHHHHHHHHHHhC
Confidence 4788999999999999999999654 9999999999999974
No 60
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.18 E-value=0.00034 Score=66.16 Aligned_cols=232 Identities=18% Similarity=0.148 Sum_probs=157.4
Q ss_pred CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc-cchhhhhhccC
Q 020640 42 ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH-DNNKKLVAETP 120 (323)
Q Consensus 42 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~~ 120 (323)
.+..+..+|+++|.|....++..|..+.+ .|..+.+++.|+.+..- +.+.++.-....+|+-++.. .+.+..+.+..
T Consensus 44 ~~~~v~~EALKCL~N~lf~s~~aR~~~~~-~~~~~~l~~~Lk~~~~~-~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~ 121 (446)
T PF10165_consen 44 PDPDVSREALKCLCNALFLSPSARQIFVD-LGLAEKLCERLKNYSDS-SQPSDVEFLDSRLLFLLTALRPDDRKKLIEEH 121 (446)
T ss_pred CChHHHHHHHHHHHHHHhCCHHHHHHHHH-cCcHHHHHHHHHccccc-CCChhHHHHHHHHHHHHhcCChhHHHHHHHHh
Confidence 34778999999999999999999999999 99999999999864210 12677888888888877654 44677777765
Q ss_pred CcHHHHHHHHhc-----------------CCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhh---------c
Q 020640 121 MVIPLLMDALRS-----------------GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE---------G 174 (323)
Q Consensus 121 g~i~~Lv~ll~~-----------------~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~---------~ 174 (323)
+.+..++..+.. ........++++++|+..+......--....++.|+.++.. +
T Consensus 122 ~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~ 201 (446)
T PF10165_consen 122 HGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPP 201 (446)
T ss_pred hhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCc
Confidence 457777766521 13455778899999997654433221224456666665442 1
Q ss_pred CHhHHHHHHHHHHHhccCCchh--------HH----HHhhCchHHHHHHhhcC----------chHHHHHHHHHHHhcC-
Q 020640 175 HQSAMKDVASAIFNLCITHENK--------AR----AVRDGGVSVILKKIMDG----------VHVDELLAILAMLSTN- 231 (323)
Q Consensus 175 ~~~~~~~al~aL~~L~~~~~~~--------~~----i~~~g~v~~Lv~ll~~~----------~~~~~a~~~L~~l~~~- 231 (323)
......+++.+|.|+-...... .. -.....+..|+.+|... +.....+.+|.+++..
T Consensus 202 l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~ 281 (446)
T PF10165_consen 202 LDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA 281 (446)
T ss_pred chhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc
Confidence 3457888999998883221111 00 01224566777777632 2234457777777775
Q ss_pred HHHHHHHHh--------------c--CCHHHHHHHHhccCChhHHHHHHHHHHHhcccChH
Q 020640 232 HRAVEEIGD--------------L--GGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT 276 (323)
Q Consensus 232 ~~~~~~i~~--------------~--g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~ 276 (323)
...|+.+.. . ..-..|++++.... ..++..++..|+.||..+.+
T Consensus 282 ~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~-~~~k~~vaellf~Lc~~d~~ 341 (446)
T PF10165_consen 282 REVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPD-PQLKDAVAELLFVLCKEDAS 341 (446)
T ss_pred HHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCC-chHHHHHHHHHHHHHhhhHH
Confidence 555555543 1 25788999999665 88999999999999998765
No 61
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=0.00039 Score=60.59 Aligned_cols=237 Identities=14% Similarity=0.161 Sum_probs=157.7
Q ss_pred hhhhHHHHHHHHhcCCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640 28 ADRDHFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 107 (323)
Q Consensus 28 ~~~~~i~~Lv~~l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls 107 (323)
+....++.+..++.+... -..|+.+|.|++. ++..++.+.+ . .+..++..+. ++....-...+.+|.|++
T Consensus 41 ~~~~~lk~l~qL~~~~~~-~~~a~~alVnlsq-~~~l~~~ll~-~-~~k~l~~~~~------~p~~~lad~~cmlL~NLs 110 (353)
T KOG2973|consen 41 YSEALLKDLTQLLKDLDP-AEPAATALVNLSQ-KEELRKKLLQ-D-LLKVLMDMLT------DPQSPLADLICMLLSNLS 110 (353)
T ss_pred chhhhHHHHHHHccCccc-ccHHHHHHHHHHh-hHHHHHHHHH-H-HHHHHHHHhc------CcccchHHHHHHHHHHhc
Confidence 344566777777764323 5689999999995 6778888888 5 7777777776 444567788899999999
Q ss_pred cccchhhhhhc------cCCcHHHHHHHHhcC-C-HHHHHHHHHHHHHhcCCCCchhhhhccCCh--HHHHHHhhhcCHh
Q 020640 108 IHDNNKKLVAE------TPMVIPLLMDALRSG-T-IETRSNAAAALFTLSALDSNKEVIGKSGAL--KPLIDLLDEGHQS 177 (323)
Q Consensus 108 ~~~~~~~~i~~------~~g~i~~Lv~ll~~~-~-~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i--~~Lv~lL~~~~~~ 177 (323)
..++....+.. ..|........+..+ + ..-....+-++.||+.....|..+.....+ +.|+.+- +.+..
T Consensus 111 ~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~~~gR~l~~~~k~~p~~kll~ft-~~~s~ 189 (353)
T KOG2973|consen 111 RDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQFEAGRKLLLEPKRFPDQKLLPFT-SEDSQ 189 (353)
T ss_pred cCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhhhhhhhhHhcchhhhhHhhhhccc-ccchh
Confidence 98874433322 134444444444433 2 233456788999999999888888774422 2233332 33333
Q ss_pred H-HHHHHHHHHHhccCCchhHHHHhhCchHHHHHHh------------------------hc-------CchHHHHHHHH
Q 020640 178 A-MKDVASAIFNLCITHENKARAVRDGGVSVILKKI------------------------MD-------GVHVDELLAIL 225 (323)
Q Consensus 178 ~-~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll------------------------~~-------~~~~~~a~~~L 225 (323)
+ +...+++|.|.|++......++.. .+..|..+| .. +.++..-+.+|
T Consensus 190 vRr~GvagtlkN~cFd~~~h~~lL~e-~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai 268 (353)
T KOG2973|consen 190 VRRGGVAGTLKNCCFDAKLHEVLLDE-SINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEAL 268 (353)
T ss_pred hhccchHHHHHhhhccchhHHHHhcc-hHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHH
Confidence 4 456889999999988887777652 333333332 11 14577789999
Q ss_pred HHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChH
Q 020640 226 AMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT 276 (323)
Q Consensus 226 ~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~ 276 (323)
.-||....+|+.+++.|+-+.+-.+=+...+++..+.+-.....+...+++
T Consensus 269 ~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~~e~~ 319 (353)
T KOG2973|consen 269 LLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVRLEPE 319 (353)
T ss_pred HHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999886555444444334477788777777777776653
No 62
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.16 E-value=0.00068 Score=61.50 Aligned_cols=259 Identities=15% Similarity=0.091 Sum_probs=177.8
Q ss_pred HHHHHHHHHHHhccChh-hHHHHhhhc--CCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhcc----
Q 020640 47 QTEAAKELRLLTKRMPS-FRALFGESH--DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAET---- 119 (323)
Q Consensus 47 ~~~a~~~L~~l~~~~~~-~~~~i~~~~--g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~---- 119 (323)
...-...++++...... -|..+.... ..+..++++++. ...++.....+..+.-+-..+..+..++..
T Consensus 36 se~d~~~i~~~~~~~~~~~r~~~l~~~~~~~v~~fi~LlS~-----~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~ 110 (442)
T KOG2759|consen 36 SEEDYQFIRRLEKAPLSKERAQVLSANNAQYVKTFINLLSH-----IDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHK 110 (442)
T ss_pred hHhhHHHHHHHhcccchhhhhHHhhcccHHHHHHHHHHhch-----hhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHh
Confidence 44455566666543221 233344312 246777888874 334666777777777665555555544431
Q ss_pred --CCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCC-hHHHHHHhhh-cCHhHHHHHHHHHHHhccCCch
Q 020640 120 --PMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGA-LKPLIDLLDE-GHQSAMKDVASAIFNLCITHEN 195 (323)
Q Consensus 120 --~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~-i~~Lv~lL~~-~~~~~~~~al~aL~~L~~~~~~ 195 (323)
.-..+..++++...+.-+...+.+++..++.+...+....+... ...|-+.+.+ .+.....-+.++|..+...++-
T Consensus 111 ~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~ey 190 (442)
T KOG2759|consen 111 LKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEY 190 (442)
T ss_pred hhccchHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcch
Confidence 11245578888888888888899999999877765555444222 2333444555 5677888899999999999999
Q ss_pred hHHHHhhCchHHHHHHhhcC----chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 020640 196 KARAVRDGGVSVILKKIMDG----VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTIC 271 (323)
Q Consensus 196 ~~~i~~~g~v~~Lv~ll~~~----~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~ 271 (323)
|..++.+.++..++..+.+. .++-..+-+++-|+.+|...+.+..-+.|+.|.++++++...++.+-++.++.|+.
T Consensus 191 R~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll 270 (442)
T KOG2759|consen 191 RYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLL 270 (442)
T ss_pred hheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998432 57888999999999999998888777899999999997655888999999999999
Q ss_pred ccCh------HhHHHHHhhcccHHHHHHHhhcC--CHHHHHHHHHHHH
Q 020640 272 LSDR------TKWKAMREEESTHGTISKLAQDG--TARAKRKATGILE 311 (323)
Q Consensus 272 ~~~~------~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~A~~~L~ 311 (323)
...+ .....++ ..++.+.+-.+.... +++...--..+-+
T Consensus 271 ~k~~~~~~~k~~~~~mv-~~~v~k~l~~L~~rkysDEDL~~di~~L~e 317 (442)
T KOG2759|consen 271 DKGPDRETKKDIASQMV-LCKVLKTLQSLEERKYSDEDLVDDIEFLTE 317 (442)
T ss_pred ccCchhhHHHHHHHHHH-hcCchHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 8874 2223344 456666666555544 4444444333333
No 63
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=8.2e-05 Score=69.18 Aligned_cols=195 Identities=14% Similarity=0.114 Sum_probs=146.5
Q ss_pred HHHHHHhccccc-hhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhc-CCCCchhhhhccCChHHHHHHhhhcCHh
Q 020640 100 ITTLLNLSIHDN-NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLS-ALDSNKEVIGKSGALKPLIDLLDEGHQS 177 (323)
Q Consensus 100 ~~~L~~ls~~~~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 177 (323)
+..|..++..-. -|..+...+ +.+.|+.+|..++..+...+...+.|+. .+.+.+..+.+.|++..|++++.+.+..
T Consensus 410 ~l~LkS~SrSV~~LRTgL~d~~-I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDda 488 (743)
T COG5369 410 VLFLKSMSRSVTFLRTGLLDYP-IVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDA 488 (743)
T ss_pred HHHHHHhhHHHHHHHhhccccc-hHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhh
Confidence 334556655444 366666665 7899999999987777778888888886 5566688889999999999999998889
Q ss_pred HHHHHHHHHHHhccCCc--hhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC----HHHHHHHHhcC----CHH
Q 020640 178 AMKDVASAIFNLCITHE--NKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN----HRAVEEIGDLG----GVS 245 (323)
Q Consensus 178 ~~~~al~aL~~L~~~~~--~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~----~~~~~~i~~~g----~i~ 245 (323)
.+.+..|.|+.+-.+.+ .+.+.+..-++..++.+..++ .++.+++.+|+|+..+ ++.++.+.+.. ...
T Consensus 489 Lqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk 568 (743)
T COG5369 489 LQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFK 568 (743)
T ss_pred hhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHH
Confidence 99999999999988775 355667777899999999988 8999999999999884 23344444332 355
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhh
Q 020640 246 CMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQ 296 (323)
Q Consensus 246 ~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~ 296 (323)
.|++.++..+ |...+..+-+|.+++..+++...-++.+...+....+++.
T Consensus 569 ~l~~k~e~~n-p~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~ 618 (743)
T COG5369 569 RLIDKYEENN-PMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILD 618 (743)
T ss_pred HHHHHHHhcC-chhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHH
Confidence 6677777544 6666777888888888776655556666666666666654
No 64
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.08 E-value=0.00049 Score=68.67 Aligned_cols=251 Identities=12% Similarity=0.077 Sum_probs=177.3
Q ss_pred HHHHHHcCCCCCCCCCCCCccccchhhhhHHHHHHHHhcCCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhh
Q 020640 3 SQWCRSQGIELPNSVQYINEEGITEADRDHFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPL 82 (323)
Q Consensus 3 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lv~~l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL 82 (323)
|=||+.+..+..-|.| .+ -+++.|+++. -|..|+..|.++-.-.+=-...-.. .|+.|.++++|
T Consensus 458 evWLd~gse~r~PPeQ------LP----iVLQVLLSQv-----HRlRAL~LL~RFLDlGpWAV~LaLs-VGIFPYVLKLL 521 (1387)
T KOG1517|consen 458 EVWLDYGSESRTPPEQ------LP----IVLQVLLSQV-----HRLRALVLLARFLDLGPWAVDLALS-VGIFPYVLKLL 521 (1387)
T ss_pred HHHHHhccccCCChHh------cc----hHHHHHHHHH-----HHHHHHHHHHHHhccchhhhhhhhc-cchHHHHHHHh
Confidence 5688877766544444 11 3777887764 5788999998888655533334456 89999999999
Q ss_pred cccccCCCCCHHHHHHHHHHHH-HhccccchhhhhhccCCcHHHHHHHHhc-C--CHHHHHHHHHHHHHhcC-CCCchhh
Q 020640 83 SESKCENGINPNLQEDVITTLL-NLSIHDNNKKLVAETPMVIPLLMDALRS-G--TIETRSNAAAALFTLSA-LDSNKEV 157 (323)
Q Consensus 83 ~~~~~~~~~~~~~~~~a~~~L~-~ls~~~~~~~~i~~~~g~i~~Lv~ll~~-~--~~~~~~~a~~~L~~L~~-~~~~~~~ 157 (323)
+ +...+++..-+-+=. .||.++.++..+++..| ....+..|.. . +++-+..++-+|..+.. +.-.++.
T Consensus 522 Q------S~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g-~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~a 594 (1387)
T KOG1517|consen 522 Q------SSARELRPILVFIWAKILAVDPSCQADLVKENG-YKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKA 594 (1387)
T ss_pred c------cchHhhhhhHHHHHHHHHhcCchhHHHHHhccC-ceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHH
Confidence 9 556676665444332 46778888999998876 6667777765 2 56888888999988874 3445666
Q ss_pred hhccCChHHHHHHhhhc-CHhHHHHHHHHHHHhccCC-chhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC--
Q 020640 158 IGKSGALKPLIDLLDEG-HQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-- 231 (323)
Q Consensus 158 i~~~g~i~~Lv~lL~~~-~~~~~~~al~aL~~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-- 231 (323)
..+.+.+..-++.|.++ .+-++.-++-+|..|=.+. +.|..=.+.++.+.|+.+|+++ +++..|+-+|..+-.+
T Consensus 595 cl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~ 674 (1387)
T KOG1517|consen 595 CLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGS 674 (1387)
T ss_pred hccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccc
Confidence 77788888888888885 5677888888888885554 4555557789999999999987 7888888888877663
Q ss_pred ---HHHHHHH-----------HhcCCH----HHHHHHHhccCChhHHHHHHHHHHHhcccChHh
Q 020640 232 ---HRAVEEI-----------GDLGGV----SCMLRIIRESTCDRNKENCIAILHTICLSDRTK 277 (323)
Q Consensus 232 ---~~~~~~i-----------~~~g~i----~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~ 277 (323)
++....+ .-+..+ ..++..+++++ +-++...+-+|..+.......
T Consensus 675 d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgs-plvr~ev~v~ls~~~~g~~~~ 737 (1387)
T KOG1517|consen 675 DNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGS-PLVRTEVVVALSHFVVGYVSH 737 (1387)
T ss_pred cccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccc-hHHHHHHHHHHHHHHHhhHHH
Confidence 2211111 112222 36777777665 888888888999888877553
No 65
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.04 E-value=0.00024 Score=65.25 Aligned_cols=179 Identities=13% Similarity=0.149 Sum_probs=139.1
Q ss_pred hHHHHhhhcCCHHHHHHhhcccccCCCCCH--HHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhc-CCHHHHHH
Q 020640 64 FRALFGESHDAIPQLLSPLSESKCENGINP--NLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRS-GTIETRSN 140 (323)
Q Consensus 64 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~--~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~-~~~~~~~~ 140 (323)
.+..+.. .|+++.|++++. +++- .++..+..+|..+. ..+|+..++..+ ...++.+.+. +.++....
T Consensus 172 LCD~iR~-~~~lD~Llrmf~------aPn~et~vRve~~rlLEq~~-~aeN~d~va~~~--~~~Il~lAK~~e~~e~aR~ 241 (832)
T KOG3678|consen 172 LCDAIRL-DGGLDLLLRMFQ------APNLETSVRVEAARLLEQIL-VAENRDRVARIG--LGVILNLAKEREPVELARS 241 (832)
T ss_pred hhhHhhc-cchHHHHHHHHh------CCchhHHHHHHHHHHHHHHH-hhhhhhHHhhcc--chhhhhhhhhcCcHHHHHH
Confidence 3455677 899999999998 4443 46888999888764 446777777764 5566666654 47788999
Q ss_pred HHHHHHHhcCCC-CchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCC--chhHHHHhhCchHHHHHHhhcC--
Q 020640 141 AAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITH--ENKARAVRDGGVSVILKKIMDG-- 215 (323)
Q Consensus 141 a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~--~~~~~i~~~g~v~~Lv~ll~~~-- 215 (323)
.+++|.++-.+. +.+..+++.|++...+-.++..++.+..+|+-+|.|.+.+. +.+.+|++..+-+-|..+-.+.
T Consensus 242 ~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDe 321 (832)
T KOG3678|consen 242 VAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDE 321 (832)
T ss_pred HHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHH
Confidence 999999998665 45888999999999999999999999999999999998866 5777888887777777765544
Q ss_pred chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHh
Q 020640 216 VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIR 252 (323)
Q Consensus 216 ~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~ 252 (323)
-++-.||-+.+-++.+.+....+.+.|.+..+-.++.
T Consensus 322 l~R~~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva 358 (832)
T KOG3678|consen 322 LLRLHACLAVAVLATNKEVEREVRKSGTLALVEPLVA 358 (832)
T ss_pred HHHHHHHHHHhhhhhhhhhhHHHhhccchhhhhhhhh
Confidence 4688899999999999888888888875443333333
No 66
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.02 E-value=0.00069 Score=59.39 Aligned_cols=223 Identities=12% Similarity=0.087 Sum_probs=159.9
Q ss_pred CHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcC--CHHHHHHHHHHHHHhcCCCCchhhhhc-cCChHHHH
Q 020640 92 NPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSG--TIETRSNAAAALFTLSALDSNKEVIGK-SGALKPLI 168 (323)
Q Consensus 92 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~--~~~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv 168 (323)
++-.+-.|++.+.++....+.|..+.....+...++.+++.. ..+.+.+..-+++-|+..+.....+-. ...+..|+
T Consensus 162 ~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli 241 (432)
T COG5231 162 DFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLI 241 (432)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 455788899999999999998887776555778899998864 678999999999999987776644433 55678888
Q ss_pred HHhhhc-CHhHHHHHHHHHHHhccCC--chhHHHHhhCchHHHHHHhhcC-----ch-------HHHH------H----H
Q 020640 169 DLLDEG-HQSAMKDVASAIFNLCITH--ENKARAVRDGGVSVILKKIMDG-----VH-------VDEL------L----A 223 (323)
Q Consensus 169 ~lL~~~-~~~~~~~al~aL~~L~~~~--~~~~~i~~~g~v~~Lv~ll~~~-----~~-------~~~a------~----~ 223 (323)
++.++. ...+.+.+++.+.|++.-. +....+.-.|-+.+-++.|.++ ++ ++.. + .
T Consensus 242 ~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~ 321 (432)
T COG5231 242 AIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDN 321 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 888875 5678889999999998722 3333445556566667766543 11 1111 0 1
Q ss_pred HHHHHhc-----C---------HHHHHHHHhc--CCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhccc
Q 020640 224 ILAMLST-----N---------HRAVEEIGDL--GGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEEST 287 (323)
Q Consensus 224 ~L~~l~~-----~---------~~~~~~i~~~--g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~ 287 (323)
.+..|=+ . .++.+.+.+. .++..|.++++.........-||.=+..+....|+ ...++...|+
T Consensus 322 Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE-~~~vl~Kyg~ 400 (432)
T COG5231 322 YLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPE-INAVLSKYGV 400 (432)
T ss_pred HHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCch-HHHHHHHhhh
Confidence 1122211 1 2455555554 36899999999654233566678888888888877 4577778999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640 288 HGTISKLAQDGTARAKRKATGILERLKR 315 (323)
Q Consensus 288 i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 315 (323)
-+.+.+++.+++++++-.|..++..+-.
T Consensus 401 k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 401 KEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 9999999999999999999999987754
No 67
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=0.00059 Score=63.98 Aligned_cols=272 Identities=13% Similarity=0.119 Sum_probs=176.8
Q ss_pred hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640 31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 109 (323)
Q Consensus 31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~ 109 (323)
+.||.|-+.+. -++.+|.-.+.-|..+-. .|. .+.+.=-....+-|+++|. +++.+++..+=.+|.++-..
T Consensus 167 ~~ipLL~eriy~~n~~tR~flv~Wl~~Lds-~P~-~~m~~yl~~~ldGLf~~Ls------D~s~eVr~~~~t~l~~fL~e 238 (675)
T KOG0212|consen 167 EFIPLLRERIYVINPMTRQFLVSWLYVLDS-VPD-LEMISYLPSLLDGLFNMLS------DSSDEVRTLTDTLLSEFLAE 238 (675)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHhc-CCc-HHHHhcchHHHHHHHHHhc------CCcHHHHHHHHHHHHHHHHH
Confidence 34444444443 457777777776666664 343 3333321345666778887 67788886666666555332
Q ss_pred cchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHh-HHHHHH---HH
Q 020640 110 DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQS-AMKDVA---SA 185 (323)
Q Consensus 110 ~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~-~~~~al---~a 185 (323)
-.+....+..+..++.++.-+.++++.++..|..-+..+..-........-.|++..++.++.+.... ++..+. ..
T Consensus 239 I~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~ 318 (675)
T KOG0212|consen 239 IRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGL 318 (675)
T ss_pred HhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHH
Confidence 22333333445567888999999999999999888877765444444444478888888888876543 333322 23
Q ss_pred HHHhccCCchhHHHHhh-CchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHH
Q 020640 186 IFNLCITHENKARAVRD-GGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKEN 262 (323)
Q Consensus 186 L~~L~~~~~~~~~i~~~-g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 262 (323)
|..++........ ++. ..+..+-+.+.+. +.+..++.-+..+-..-.++-........+.|+.-+.+.+ +.+...
T Consensus 319 l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~s-d~vvl~ 396 (675)
T KOG0212|consen 319 LLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRS-DEVVLL 396 (675)
T ss_pred HHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCch-hHHHHH
Confidence 4444444333333 333 3556777777766 5566677666666554445555555678899999998655 999999
Q ss_pred HHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 020640 263 CIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 317 (323)
Q Consensus 263 a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 317 (323)
+...+.++|.++.. . .. -.+...|+++-..+..-.+.++..+++.||-.=
T Consensus 397 ~L~lla~i~~s~~~-~-~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL 446 (675)
T KOG0212|consen 397 ALSLLASICSSSNS-P-NL---RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLL 446 (675)
T ss_pred HHHHHHHHhcCccc-c-cH---HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHh
Confidence 99999999998754 1 11 246677888878788888999999999998643
No 68
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.00 E-value=1.1e-05 Score=49.30 Aligned_cols=40 Identities=30% Similarity=0.410 Sum_probs=37.1
Q ss_pred ChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640 61 MPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 107 (323)
Q Consensus 61 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls 107 (323)
+++++..+.+ .|++|.|+++|+ ++++++++.|+++|.||+
T Consensus 1 ~~~~~~~i~~-~g~i~~Lv~ll~------~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVE-AGGIPPLVQLLK------SPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHH-TTHHHHHHHHTT------SSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-cccHHHHHHHHc------CCCHHHHHHHHHHHHHHh
Confidence 4678899999 999999999999 789999999999999997
No 69
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=0.0044 Score=56.70 Aligned_cols=256 Identities=19% Similarity=0.232 Sum_probs=176.6
Q ss_pred HHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccc------hh----hhhhc
Q 020640 49 EAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN------NK----KLVAE 118 (323)
Q Consensus 49 ~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~------~~----~~i~~ 118 (323)
..+..+.-++ ..|+....+++ .++++.|+.+|. ++|..+....+..|..|...+. .. ..+++
T Consensus 103 d~IQ~mhvlA-t~PdLYp~lve-ln~V~slL~LLg------HeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvd 174 (536)
T KOG2734|consen 103 DIIQEMHVLA-TMPDLYPILVE-LNAVQSLLELLG------HENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVD 174 (536)
T ss_pred HHHHHHHhhh-cChHHHHHHHH-hccHHHHHHHhc------CCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHh
Confidence 3677777777 57888889999 999999999999 7788999999999999975431 11 23444
Q ss_pred cCCcHHHHHHHHhcCC------HHHHHHHHHHHHHhcCCC-CchhhhhccCChHHHHHHhhhc--CHhHHHHHHHHHHHh
Q 020640 119 TPMVIPLLMDALRSGT------IETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEG--HQSAMKDVASAIFNL 189 (323)
Q Consensus 119 ~~g~i~~Lv~ll~~~~------~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~al~aL~~L 189 (323)
|++++.|++-+..=+ ..........+-|+.... +....+++.|.+.-|++-+... -..-..+|...|.-+
T Consensus 175 -g~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLail 253 (536)
T KOG2734|consen 175 -GQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAIL 253 (536)
T ss_pred -ccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHH
Confidence 668888888775432 234455677778886544 4566777777777666644432 334567788888777
Q ss_pred ccCC-chhHHHHhhCchHHHHHHhh-----cC------chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCCh
Q 020640 190 CITH-ENKARAVRDGGVSVILKKIM-----DG------VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCD 257 (323)
Q Consensus 190 ~~~~-~~~~~i~~~g~v~~Lv~ll~-----~~------~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~ 257 (323)
-.+. +++.......++..+++-+. ++ ..-++-...|+.+-..+.+|..|+...+++...-+++. . .
T Consensus 254 lq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-K-k 331 (536)
T KOG2734|consen 254 LQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-K-K 331 (536)
T ss_pred hccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-H-H
Confidence 6655 47777777788888888664 22 23455566666666779999999998888887777875 3 6
Q ss_pred hHHHHHHHHHHHhcccCh--HhHHHHHhhcccHHHHHHH-hhc---------CCHHHHHHHHHHHHHHhcc
Q 020640 258 RNKENCIAILHTICLSDR--TKWKAMREEESTHGTISKL-AQD---------GTARAKRKATGILERLKRT 316 (323)
Q Consensus 258 ~~~~~a~~~L~~L~~~~~--~~~~~~~~~~~~i~~L~~l-l~~---------~~~~~~~~A~~~L~~l~~~ 316 (323)
..+..+.++|-....+.+ ..+..++ +..+...+..+ .+. .-++..+.-..+|+.+.++
T Consensus 332 ~sr~SalkvLd~am~g~~gt~~C~kfV-e~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~ 401 (536)
T KOG2734|consen 332 VSRGSALKVLDHAMFGPEGTPNCNKFV-EILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN 401 (536)
T ss_pred HhhhhHHHHHHHHHhCCCchHHHHHHH-HHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence 678889999999888776 4455555 35555555443 321 1345555666666666553
No 70
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=0.0039 Score=60.22 Aligned_cols=217 Identities=14% Similarity=0.197 Sum_probs=133.5
Q ss_pred hhhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHH
Q 020640 27 EADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN 105 (323)
Q Consensus 27 ~~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ 105 (323)
+..++.-+-++.+|+ +-+.+|.+|+..+..+...-++ .+. -+.|.|++-|. ++|+.++..|+.+++.
T Consensus 140 dLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe---Alr---~~FprL~EkLe------DpDp~V~SAAV~VICE 207 (877)
T KOG1059|consen 140 DLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPE---ALR---PCFPRLVEKLE------DPDPSVVSAAVSVICE 207 (877)
T ss_pred hhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhH---hHh---hhHHHHHHhcc------CCCchHHHHHHHHHHH
Confidence 344567778888996 5588999999999999976443 333 36888999999 8899999999999999
Q ss_pred hccccc-hhhhhhccCCcHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcC-HhHHHHH
Q 020640 106 LSIHDN-NKKLVAETPMVIPLLMDALRS-GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGH-QSAMKDV 182 (323)
Q Consensus 106 ls~~~~-~~~~i~~~~g~i~~Lv~ll~~-~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~a 182 (323)
||..+. +.-. .-|.+..++.. .+.=.....++...+|+..++ .++. ..+++|.+++.+.. .++...|
T Consensus 208 LArKnPknyL~------LAP~ffkllttSsNNWmLIKiiKLF~aLtplEP---RLgK-KLieplt~li~sT~AmSLlYEC 277 (877)
T KOG1059|consen 208 LARKNPQNYLQ------LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEP---RLGK-KLIEPITELMESTVAMSLLYEC 277 (877)
T ss_pred HHhhCCccccc------ccHHHHHHHhccCCCeehHHHHHHHhhccccCc---hhhh-hhhhHHHHHHHhhHHHHHHHHH
Confidence 997655 4332 24566677754 344455566777777765443 2222 37888999888763 3455556
Q ss_pred HHHHH--HhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc-CHHHHHHHHhcCCHHHHHHHHhccCCh
Q 020640 183 ASAIF--NLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCD 257 (323)
Q Consensus 183 l~aL~--~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~ 257 (323)
.+++- +++.+..+...-+.. +++.|=.++.+. +++.-++-++..+.. ++....+.- +.+++.|.+.+ .
T Consensus 278 vNTVVa~s~s~g~~d~~asiqL-CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~k-----dlIlrcL~DkD-~ 350 (877)
T KOG1059|consen 278 VNTVVAVSMSSGMSDHSASIQL-CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHK-----DLILRCLDDKD-E 350 (877)
T ss_pred HHHheeehhccCCCCcHHHHHH-HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhH-----HHHHHHhccCC-c
Confidence 65553 333332233333322 455555555544 566666666666665 333222211 23344444332 5
Q ss_pred hHHHHHHHHHHHhcc
Q 020640 258 RNKENCIAILHTICL 272 (323)
Q Consensus 258 ~~~~~a~~~L~~L~~ 272 (323)
.++..|+..|.-+..
T Consensus 351 SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 351 SIRLRALDLLYGMVS 365 (877)
T ss_pred hhHHHHHHHHHHHhh
Confidence 555556555555544
No 71
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=0.0031 Score=60.93 Aligned_cols=266 Identities=15% Similarity=0.154 Sum_probs=165.7
Q ss_pred hhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640 28 ADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 106 (323)
Q Consensus 28 ~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l 106 (323)
+-...+|+|++.|. .|+.++-.|+..++.+++.+|.+. ...-|.+..+|.+. .|-=+..+.+....+|
T Consensus 178 Alr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny------L~LAP~ffkllttS-----sNNWmLIKiiKLF~aL 246 (877)
T KOG1059|consen 178 ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY------LQLAPLFYKLLVTS-----SNNWVLIKLLKLFAAL 246 (877)
T ss_pred hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc------ccccHHHHHHHhcc-----CCCeehHHHHHHHhhc
Confidence 34457889999996 679999999999999999999875 44567788999763 3444566777878888
Q ss_pred ccccchhhhhhccCCcHHHHHHHHhcCC-HHHHHHHHHHHHHh--cCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHH
Q 020640 107 SIHDNNKKLVAETPMVIPLLMDALRSGT-IETRSNAAAALFTL--SALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVA 183 (323)
Q Consensus 107 s~~~~~~~~i~~~~g~i~~Lv~ll~~~~-~~~~~~a~~~L~~L--~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al 183 (323)
+--+ ..++++ +++.|.+++.+.+ ..+...|+.++... +...++...-+.. +++.|-.++.+.|+..+..++
T Consensus 247 tplE---PRLgKK--Lieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqL-CvqKLr~fiedsDqNLKYlgL 320 (877)
T KOG1059|consen 247 TPLE---PRLGKK--LIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQL-CVQKLRIFIEDSDQNLKYLGL 320 (877)
T ss_pred cccC---chhhhh--hhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHH-HHHHHhhhhhcCCccHHHHHH
Confidence 7543 344543 5788888888764 34555555555433 3222233332322 578888888899999999999
Q ss_pred HHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHH
Q 020640 184 SAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKE 261 (323)
Q Consensus 184 ~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~ 261 (323)
.+++-+...+.-. +.+ --..+++.|.+. .++-.|+..|.-|.. +++-.+|+ +.|+..+...+....+.
T Consensus 321 lam~KI~ktHp~~---Vqa-~kdlIlrcL~DkD~SIRlrALdLl~gmVs-kkNl~eIV-----k~LM~~~~~ae~t~yrd 390 (877)
T KOG1059|consen 321 LAMSKILKTHPKA---VQA-HKDLILRCLDDKDESIRLRALDLLYGMVS-KKNLMEIV-----KTLMKHVEKAEGTNYRD 390 (877)
T ss_pred HHHHHHhhhCHHH---HHH-hHHHHHHHhccCCchhHHHHHHHHHHHhh-hhhHHHHH-----HHHHHHHHhccchhHHH
Confidence 9999887654322 111 234678888765 689999998888776 44444443 45665544333234455
Q ss_pred HHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcC-CHHHHHHHHHHHHHHhcchhhccC
Q 020640 262 NCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG-TARAKRKATGILERLKRTVNLTHT 322 (323)
Q Consensus 262 ~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~A~~~L~~l~~~~~~~~~ 322 (323)
.-+.-+-.+|+.+ .+..+....=.+..|+++..-. ...-..-|..++-..-+...++|+
T Consensus 391 ell~~II~iCS~s--nY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR~f 450 (877)
T KOG1059|consen 391 ELLTRIISICSQS--NYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRVPSIRPF 450 (877)
T ss_pred HHHHHHHHHhhhh--hhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHheechhhhHh
Confidence 5555555555544 2445544444566677765433 222233333333333344444443
No 72
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=0.0003 Score=67.05 Aligned_cols=264 Identities=11% Similarity=0.075 Sum_probs=169.3
Q ss_pred hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640 31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 109 (323)
Q Consensus 31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~ 109 (323)
-.+|+++++.+ .++.+|..|+.++-.+.-... +..+......++.+..+-. +++++++...+.++..|...
T Consensus 174 ~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~--qal~~~iD~Fle~lFalan------D~~~eVRk~vC~alv~Llev 245 (885)
T KOG2023|consen 174 IMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT--QALYVHIDKFLEILFALAN------DEDPEVRKNVCRALVFLLEV 245 (885)
T ss_pred HhHHHHHHHHhCCChhHHHHHHhhhhheeecCc--HHHHHHHHHHHHHHHHHcc------CCCHHHHHHHHHHHHHHHHh
Confidence 47888888886 678999999999988876433 3333331234555555544 88999999999999877543
Q ss_pred cchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhc--cCChHHHHHHhhh-c-C----------
Q 020640 110 DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK--SGALKPLIDLLDE-G-H---------- 175 (323)
Q Consensus 110 ~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~--~g~i~~Lv~lL~~-~-~---------- 175 (323)
...+- +-..+++++.++..-+..++.+.-.|+.....++..+-.+..+.. ...+|.|++-+.- + +
T Consensus 246 r~dkl-~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD 324 (885)
T KOG2023|consen 246 RPDKL-VPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEED 324 (885)
T ss_pred cHHhc-ccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCcccc
Confidence 33222 222345777777777888999999999999999988866666655 4566666643320 0 0
Q ss_pred --------------------------------------------HhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHH
Q 020640 176 --------------------------------------------QSAMKDVASAIFNLCITHENKARAVRDGGVSVILKK 211 (323)
Q Consensus 176 --------------------------------------------~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~l 211 (323)
-..++-.+.+|--| ..+.....++.++.+
T Consensus 325 ~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVL-------anvf~~elL~~l~Pl 397 (885)
T KOG2023|consen 325 ESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVL-------ANVFGDELLPILLPL 397 (885)
T ss_pred ccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHH-------HHhhHHHHHHHHHHH
Confidence 01111111111111 112223455556666
Q ss_pred hhc----C--chHHHHHHHHHHHhcCHHHHHHHHhc--CCHHHHHHHHhccCChhHHHHHHHHHHHhcccChH-hHHHHH
Q 020640 212 IMD----G--VHVDELLAILAMLSTNHRAVEEIGDL--GGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT-KWKAMR 282 (323)
Q Consensus 212 l~~----~--~~~~~a~~~L~~l~~~~~~~~~i~~~--g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~-~~~~~~ 282 (323)
|+. . .+++.++-+|..++.+- -+-++.. -.++.|+.+|.+.. +-++.-.||+|...+..-.. ...+.+
T Consensus 398 Lk~~L~~~~W~vrEagvLAlGAIAEGc--M~g~~p~LpeLip~l~~~L~DKk-plVRsITCWTLsRys~wv~~~~~~~~f 474 (885)
T KOG2023|consen 398 LKEHLSSEEWKVREAGVLALGAIAEGC--MQGFVPHLPELIPFLLSLLDDKK-PLVRSITCWTLSRYSKWVVQDSRDEYF 474 (885)
T ss_pred HHHHcCcchhhhhhhhHHHHHHHHHHH--hhhcccchHHHHHHHHHHhccCc-cceeeeeeeeHhhhhhhHhcCChHhhh
Confidence 553 3 57888888888887631 1123332 25788888888654 88999999999887553211 122333
Q ss_pred hhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640 283 EEESTHGTISKLAQDGTARAKRKATGILERLKR 315 (323)
Q Consensus 283 ~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 315 (323)
...+..|++.+-+++.++|+.|+.+...+-+
T Consensus 475 --~pvL~~ll~~llD~NK~VQEAAcsAfAtleE 505 (885)
T KOG2023|consen 475 --KPVLEGLLRRLLDSNKKVQEAACSAFATLEE 505 (885)
T ss_pred --HHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2466777777888999999999999887764
No 73
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.92 E-value=0.0017 Score=61.46 Aligned_cols=264 Identities=13% Similarity=0.192 Sum_probs=172.3
Q ss_pred HHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccc----cCCCCCHHHHHHHHHHHHHhccccc-hhhhhhccCCcHHH
Q 020640 51 AKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESK----CENGINPNLQEDVITTLLNLSIHDN-NKKLVAETPMVIPL 125 (323)
Q Consensus 51 ~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~----~~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~g~i~~ 125 (323)
+.+|+-+.+ ++.+...+.. ..++..|..+-.-.. .....++.+...|+++|.|+-.... .|..+++.+ ..+.
T Consensus 2 L~~LRiLsR-d~~~~~~l~~-~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~-~~~~ 78 (446)
T PF10165_consen 2 LETLRILSR-DPTGLDPLFT-EEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLG-LAEK 78 (446)
T ss_pred HHHHHHHcc-Ccccchhhcc-HHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcC-cHHH
Confidence 456666775 4555566665 556666665541000 0016688999999999999877766 576676665 6888
Q ss_pred HHHHHhcC-----CHHHHHHHHHHHHHhcC-CCCchhhhhc-cCChHHHHHHhhh-----------------cCHhHHHH
Q 020640 126 LMDALRSG-----TIETRSNAAAALFTLSA-LDSNKEVIGK-SGALKPLIDLLDE-----------------GHQSAMKD 181 (323)
Q Consensus 126 Lv~ll~~~-----~~~~~~~a~~~L~~L~~-~~~~~~~i~~-~g~i~~Lv~lL~~-----------------~~~~~~~~ 181 (323)
++..|+.. +.+..--..++|+-++. ..+.+..+++ .+++..++..|.. .+......
T Consensus 79 l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~E 158 (446)
T PF10165_consen 79 LCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSE 158 (446)
T ss_pred HHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHH
Confidence 99999876 78888899999998864 4556777777 5788888887652 13345778
Q ss_pred HHHHHHHhccCCchhHHHHhhCchHHHHHHhh-------cC----chHHHHHHHHHHHhcC-HHH-------HHHH----
Q 020640 182 VASAIFNLCITHENKARAVRDGGVSVILKKIM-------DG----VHVDELLAILAMLSTN-HRA-------VEEI---- 238 (323)
Q Consensus 182 al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~-------~~----~~~~~a~~~L~~l~~~-~~~-------~~~i---- 238 (323)
++..++|+..+......--..+.++.++.++. .. .+...++.+|.|+-.. .+. ...+
T Consensus 159 iLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~ 238 (446)
T PF10165_consen 159 ILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEG 238 (446)
T ss_pred HHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCC
Confidence 99999999776654332112234444444432 11 3566677777777332 111 1111
Q ss_pred HhcCCHHHHHHHHhcc----CC---hhHHHHHHHHHHHhcccChHhHHHHHh---------------hcccHHHHHHHhh
Q 020640 239 GDLGGVSCMLRIIRES----TC---DRNKENCIAILHTICLSDRTKWKAMRE---------------EESTHGTISKLAQ 296 (323)
Q Consensus 239 ~~~g~i~~Lv~ll~~~----~~---~~~~~~a~~~L~~L~~~~~~~~~~~~~---------------~~~~i~~L~~ll~ 296 (323)
.....+..|+++|... .. +..-...+.+|.+++..+...++.+.. ....-..|++++.
T Consensus 239 ~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt 318 (446)
T PF10165_consen 239 DNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMT 318 (446)
T ss_pred CChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhC
Confidence 1223578888887641 11 235566778888888876543333322 4467788999999
Q ss_pred cCCHHHHHHHHHHHHHHhcch
Q 020640 297 DGTARAKRKATGILERLKRTV 317 (323)
Q Consensus 297 ~~~~~~~~~A~~~L~~l~~~~ 317 (323)
+..+.++..++..|..||+-.
T Consensus 319 ~~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 319 SPDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred CCCchHHHHHHHHHHHHHhhh
Confidence 888999999999999999643
No 74
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.00074 Score=65.37 Aligned_cols=257 Identities=10% Similarity=0.034 Sum_probs=156.8
Q ss_pred chhHHHHHHHHHHHhccChhh-HHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc-ccchhhhhhccCC
Q 020640 44 LPDQTEAAKELRLLTKRMPSF-RALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI-HDNNKKLVAETPM 121 (323)
Q Consensus 44 ~~~~~~a~~~L~~l~~~~~~~-~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~~g 121 (323)
..+|..|+.+|.|--.....+ ....-. .-.+...++.-+ +++.+++..|...|..+-. .-+....-....
T Consensus 188 ~~vRLaa~~aL~nsLef~~~nF~~E~er-n~iMqvvcEatq------~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~a- 259 (859)
T KOG1241|consen 188 AAVRLAALNALYNSLEFTKANFNNEMER-NYIMQVVCEATQ------SPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQA- 259 (859)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhccHhhh-ceeeeeeeeccc------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 445666666666644322211 111111 223344444444 7899999999999876632 222222222221
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCc------------h----hhhh-c--cCChHHHHHHhhh-------cC
Q 020640 122 VIPLLMDALRSGTIETRSNAAAALFTLSALDSN------------K----EVIG-K--SGALKPLIDLLDE-------GH 175 (323)
Q Consensus 122 ~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~------------~----~~i~-~--~g~i~~Lv~lL~~-------~~ 175 (323)
....-+.-+++.++++...++..=.+++..+-. . ..+. . .+++|.|+++|.. ++
T Consensus 260 lfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~Dd 339 (859)
T KOG1241|consen 260 LFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDD 339 (859)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCccccc
Confidence 333344556788999999998887777642211 0 1111 1 3678888888864 13
Q ss_pred HhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHh----hcC--chHHHHHHHHHHHhcCH-HHHHHHHhcCCHHHHH
Q 020640 176 QSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKI----MDG--VHVDELLAILAMLSTNH-RAVEEIGDLGGVSCML 248 (323)
Q Consensus 176 ~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll----~~~--~~~~~a~~~L~~l~~~~-~~~~~i~~~g~i~~Lv 248 (323)
......|..+|.-++.. +....++.++.++ +++ .-++.++.++..+-..+ ..+..=...++++.++
T Consensus 340 Wnp~kAAg~CL~l~A~~-------~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii 412 (859)
T KOG1241|consen 340 WNPAKAAGVCLMLFAQC-------VGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSII 412 (859)
T ss_pred CcHHHHHHHHHHHHHHH-------hcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHH
Confidence 34566666666554322 2223344444444 444 45777888887777764 3333334457899999
Q ss_pred HHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 020640 249 RIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 317 (323)
Q Consensus 249 ~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 317 (323)
.++.++ +-.++..++|+|..++..-++.+-.-......+..|++.+. +.|++-.+++|++.+|.+..
T Consensus 413 ~lm~D~-sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~ 479 (859)
T KOG1241|consen 413 NLMSDP-SLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAA 479 (859)
T ss_pred HHhcCc-hhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHH
Confidence 999954 48889999999999999887643333334556666666665 68999999999999998643
No 75
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.0048 Score=54.50 Aligned_cols=239 Identities=13% Similarity=0.125 Sum_probs=168.8
Q ss_pred CHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccc-h---hhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 020640 74 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN-N---KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLS 149 (323)
Q Consensus 74 ~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~-~---~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~ 149 (323)
.+|.+...|+.+-. .++..++..+++.+..+-.+.+ | ....+-+.|+.+.++..+..++.++.+.|...+..++
T Consensus 79 lapnlmpdLQrGLi--addasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikria 156 (524)
T KOG4413|consen 79 LAPNLMPDLQRGLI--ADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIA 156 (524)
T ss_pred hchhhhHHHHhccc--CCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 45555555554443 6778888888887776654444 2 2233335678999999999999999999999999999
Q ss_pred CCCCchhhhhccCChHHH--HHHhhhcCHhHHHHHHHHHHHhccCC-chhHHHHhhCchHHHHHHhhcC---chHHHHHH
Q 020640 150 ALDSNKEVIGKSGALKPL--IDLLDEGHQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVILKKIMDG---VHVDELLA 223 (323)
Q Consensus 150 ~~~~~~~~i~~~g~i~~L--v~lL~~~~~~~~~~al~aL~~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~ 223 (323)
.++.....+.+......+ ..+....+.-++...+..+..+..-. +.....-..|.+..|..-|+.. -++..++.
T Consensus 157 lfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciE 236 (524)
T KOG4413|consen 157 LFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIE 236 (524)
T ss_pred hcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHH
Confidence 999888888876666544 34444556667777888877775543 4555566678888877777642 35788889
Q ss_pred HHHHHhcCHHHHHHHHhcCCHHHHHHHHhccC-ChhHHHHHHHHHHHhcccC------hHh-HHHHHhhcccHHHHHHHh
Q 020640 224 ILAMLSTNHRAVEEIGDLGGVSCMLRIIREST-CDRNKENCIAILHTICLSD------RTK-WKAMREEESTHGTISKLA 295 (323)
Q Consensus 224 ~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~-~~~~~~~a~~~L~~L~~~~------~~~-~~~~~~~~~~i~~L~~ll 295 (323)
....|+..+.+++.+.++|.|+.+..++...+ ++.-+..+......+.... ++. ++..+ -+++.-.+.+
T Consensus 237 lvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaiceali---iaidgsfEmi 313 (524)
T KOG4413|consen 237 LVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALI---IAIDGSFEMI 313 (524)
T ss_pred HHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHH---HHHHhhHHhh
Confidence 99999999999999999999999999997533 2445555665555544332 111 12221 3556666778
Q ss_pred hcCCHHHHHHHHHHHHHHhcch
Q 020640 296 QDGTARAKRKATGILERLKRTV 317 (323)
Q Consensus 296 ~~~~~~~~~~A~~~L~~l~~~~ 317 (323)
..+++...+.|..++-.|....
T Consensus 314 EmnDpdaieaAiDalGilGSnt 335 (524)
T KOG4413|consen 314 EMNDPDAIEAAIDALGILGSNT 335 (524)
T ss_pred hcCCchHHHHHHHHHHhccCCc
Confidence 8889999999999988876543
No 76
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=0.016 Score=53.10 Aligned_cols=245 Identities=13% Similarity=0.167 Sum_probs=173.1
Q ss_pred hhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccCh---------hhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHH
Q 020640 28 ADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMP---------SFRALFGESHDAIPQLLSPLSESKCENGINPNLQE 97 (323)
Q Consensus 28 ~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~---------~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~ 97 (323)
-+..+++.|+.+|. ++.++....+..|..++..+. ..-..+++ .++++.|++-+.+-..-..+...-..
T Consensus 122 veln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvd-g~vlaLLvqnveRLdEsvkeea~gv~ 200 (536)
T KOG2734|consen 122 VELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVD-GQVLALLVQNVERLDESVKEEADGVH 200 (536)
T ss_pred HHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHh-ccHHHHHHHHHHHhhhcchhhhhhhH
Confidence 34578999999996 778888889999998885433 12345777 78888888777643110012233456
Q ss_pred HHHHHHHHhccccc-hhhhhhccCCcHHHHHHHHhc--CCHHHHHHHHHHHHHhcCCCC-chhhhhccCChHHHHHHhhh
Q 020640 98 DVITTLLNLSIHDN-NKKLVAETPMVIPLLMDALRS--GTIETRSNAAAALFTLSALDS-NKEVIGKSGALKPLIDLLDE 173 (323)
Q Consensus 98 ~a~~~L~~ls~~~~-~~~~i~~~~g~i~~Lv~ll~~--~~~~~~~~a~~~L~~L~~~~~-~~~~i~~~g~i~~Lv~lL~~ 173 (323)
.++..+-|+....+ ....+++. |.+..|+.-+.. +-...+..|..+|.-+-.+.+ ++.......++..+++-+.-
T Consensus 201 ~~L~vveNlv~~r~~~~~~~~e~-~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~ 279 (536)
T KOG2734|consen 201 NTLAVVENLVEVRPAICTEIVEQ-GLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAV 279 (536)
T ss_pred HHHHHHHHHHhccHHHHHHHHHh-hHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcch
Confidence 67777778765444 56666775 677776664433 334567778888888865544 78888888889999887642
Q ss_pred ----c-----CHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC-chHHHHHHHHHHHhcCH---HHHHHHHh
Q 020640 174 ----G-----HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG-VHVDELLAILAMLSTNH---RAVEEIGD 240 (323)
Q Consensus 174 ----~-----~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~-~~~~~a~~~L~~l~~~~---~~~~~i~~ 240 (323)
+ ..+..++.-.+|+.+-....++..++...+++.+.=+++.. ..+-.++.+|-....++ ++...+++
T Consensus 280 yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~Kk~sr~SalkvLd~am~g~~gt~~C~kfVe 359 (536)
T KOG2734|consen 280 YKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREKKVSRGSALKVLDHAMFGPEGTPNCNKFVE 359 (536)
T ss_pred hhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 1 34577888889999889999999999988888777777655 56788999999888864 67778888
Q ss_pred cCCHHHHHHHHh-c--------cCChhHHHHHHHHHHHhcccC
Q 020640 241 LGGVSCMLRIIR-E--------STCDRNKENCIAILHTICLSD 274 (323)
Q Consensus 241 ~g~i~~Lv~ll~-~--------~~~~~~~~~a~~~L~~L~~~~ 274 (323)
.+|+..+..+.. . ...+..-++.+.+|+.+-.+.
T Consensus 360 ~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~ 402 (536)
T KOG2734|consen 360 ILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNL 402 (536)
T ss_pred HHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhc
Confidence 888888775554 2 122556777888888776533
No 77
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.87 E-value=0.0054 Score=57.19 Aligned_cols=220 Identities=12% Similarity=0.010 Sum_probs=121.6
Q ss_pred hhhHHHHHHHHhc--CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640 29 DRDHFLSLLKKMS--ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 106 (323)
Q Consensus 29 ~~~~i~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l 106 (323)
....++.|+..|. ++..++..++..+ ....+ ..+++.|+..|. +.++.++..++.+|..+
T Consensus 52 G~~a~~~L~~aL~~d~~~ev~~~aa~al--~~~~~----------~~~~~~L~~~L~------d~~~~vr~aaa~ALg~i 113 (410)
T TIGR02270 52 GKAATELLVSALAEADEPGRVACAALAL--LAQED----------ALDLRSVLAVLQ------AGPEGLCAGIQAALGWL 113 (410)
T ss_pred hHhHHHHHHHHHhhCCChhHHHHHHHHH--hccCC----------hHHHHHHHHHhc------CCCHHHHHHHHHHHhcC
Confidence 3457888888885 3344444444333 22211 223777888887 66777888888877644
Q ss_pred ccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHH
Q 020640 107 SIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAI 186 (323)
Q Consensus 107 s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL 186 (323)
- ...+.+.|+.++++.++.++..++.++... .....+.|..+|++.++.++..|+++|
T Consensus 114 ~-----------~~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raL 171 (410)
T TIGR02270 114 G-----------GRQAEPWLEPLLAASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRAL 171 (410)
T ss_pred C-----------chHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHH
Confidence 2 123456667777777777666666555441 112345666777766777777777777
Q ss_pred HHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHH------------------HHhc----C
Q 020640 187 FNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEE------------------IGDL----G 242 (323)
Q Consensus 187 ~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~------------------i~~~----g 242 (323)
..+-. ...++.|...+.+. .++..|+..+..+-. ++.... +... .
T Consensus 172 G~l~~----------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~ 240 (410)
T TIGR02270 172 GELPR----------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPD 240 (410)
T ss_pred Hhhcc----------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCCchh
Confidence 66532 12344455555443 455555555544422 111111 0111 2
Q ss_pred CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640 243 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 316 (323)
Q Consensus 243 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 316 (323)
.++.|..++++ +.+++.++.++..+- +...++.|++.+.+ +.+.+.|-.+++.++..
T Consensus 241 a~~~L~~ll~d---~~vr~~a~~AlG~lg------------~p~av~~L~~~l~d--~~~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 241 AQAWLRELLQA---AATRREALRAVGLVG------------DVEAAPWCLEAMRE--PPWARLAGEAFSLITGM 297 (410)
T ss_pred HHHHHHHHhcC---hhhHHHHHHHHHHcC------------CcchHHHHHHHhcC--cHHHHHHHHHHHHhhCC
Confidence 34444455543 235666666555432 23466777777663 33888888888888763
No 78
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=0.0027 Score=61.64 Aligned_cols=268 Identities=13% Similarity=0.138 Sum_probs=166.7
Q ss_pred hHHHHHHHHhc-CC-chhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc-
Q 020640 31 DHFLSLLKKMS-AT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS- 107 (323)
Q Consensus 31 ~~i~~Lv~~l~-~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls- 107 (323)
+.++.|++... +. ..+|..++.+|..+|.+ -.-.........++-.++.-.+.. ..+..++-.|+.+|.|--
T Consensus 129 ~li~~lv~nv~~~~~~~~k~~slealGyice~-i~pevl~~~sN~iLtaIv~gmrk~----e~s~~vRLaa~~aL~nsLe 203 (859)
T KOG1241|consen 129 ELIVTLVSNVGEEQASMVKESSLEALGYICED-IDPEVLEQQSNDILTAIVQGMRKE----ETSAAVRLAALNALYNSLE 203 (859)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHcc-CCHHHHHHHHhHHHHHHHhhcccc----CCchhHHHHHHHHHHHHHH
Confidence 45566666663 33 34788899999999954 333322223133555666666533 557788999999998642
Q ss_pred ccc------chhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CCCchhhhhccCChHHHHHHhhhcCHhHHH
Q 020640 108 IHD------NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSA-LDSNKEVIGKSGALKPLIDLLDEGHQSAMK 180 (323)
Q Consensus 108 ~~~------~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~ 180 (323)
.-. ..|.- +.......-++++.+++..|...|..+.. +-+....-+........+..++++++++..
T Consensus 204 f~~~nF~~E~ern~------iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deVal 277 (859)
T KOG1241|consen 204 FTKANFNNEMERNY------IMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVAL 277 (859)
T ss_pred HHHHhhccHhhhce------eeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 111 12222 23333445567889999999999988853 222222223334556666778888999999
Q ss_pred HHHHHHHHhccCC-chh---HHHHh---------------hCchHHHHHHhhcC---------chHHHHHHHHHHHhcCH
Q 020640 181 DVASAIFNLCITH-ENK---ARAVR---------------DGGVSVILKKIMDG---------VHVDELLAILAMLSTNH 232 (323)
Q Consensus 181 ~al~aL~~L~~~~-~~~---~~i~~---------------~g~v~~Lv~ll~~~---------~~~~~a~~~L~~l~~~~ 232 (323)
.+...=.++|... +.. ....+ .+++|.|+++|... .+.+.|-.+|.-++.+
T Consensus 278 QaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~- 356 (859)
T KOG1241|consen 278 QAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC- 356 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH-
Confidence 9988877777543 211 11111 15677888888631 3444444444444431
Q ss_pred HHHHHHHhcCCHHHHHHHHhc---cCChhHHHHHHHHHHHhcccChH-hHHHHHhhcccHHHHHHHhhcCCHHHHHHHHH
Q 020640 233 RAVEEIGDLGGVSCMLRIIRE---STCDRNKENCIAILHTICLSDRT-KWKAMREEESTHGTISKLAQDGTARAKRKATG 308 (323)
Q Consensus 233 ~~~~~i~~~g~i~~Lv~ll~~---~~~~~~~~~a~~~L~~L~~~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~ 308 (323)
++..+++++..+++. .++-+-++.|+-++..+-...+. +...++ .+.++.++++..+.+-.+++-+.|
T Consensus 357 ------~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV--~qalp~ii~lm~D~sl~VkdTaAw 428 (859)
T KOG1241|consen 357 ------VGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIV--IQALPSIINLMSDPSLWVKDTAAW 428 (859)
T ss_pred ------hcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHH--hhhhHHHHHHhcCchhhhcchHHH
Confidence 222344555555543 22245578888888888776544 334443 589999999999889999999999
Q ss_pred HHHHHhcchh
Q 020640 309 ILERLKRTVN 318 (323)
Q Consensus 309 ~L~~l~~~~~ 318 (323)
.|-.++++-+
T Consensus 429 tlgrI~d~l~ 438 (859)
T KOG1241|consen 429 TLGRIADFLP 438 (859)
T ss_pred HHHHHHhhch
Confidence 9999998654
No 79
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=0.0021 Score=60.40 Aligned_cols=241 Identities=15% Similarity=0.146 Sum_probs=164.6
Q ss_pred HHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCc
Q 020640 75 IPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN 154 (323)
Q Consensus 75 i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~ 154 (323)
++.++.+|++.-- ..++..+..-+.-|..|=..+ ....+.--+.+.+.|+.+|.+++++++..+-.++.++-..-.+
T Consensus 165 L~~~ipLL~eriy--~~n~~tR~flv~Wl~~Lds~P-~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s 241 (675)
T KOG0212|consen 165 LPEFIPLLRERIY--VINPMTRQFLVSWLYVLDSVP-DLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRS 241 (675)
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhcCC-cHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc
Confidence 4444444442111 457788888888777663332 2333332334677789999999999998888777776432223
Q ss_pred hhhhhc-cCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcCc---hHHHH---HHHHHH
Q 020640 155 KEVIGK-SGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGV---HVDEL---LAILAM 227 (323)
Q Consensus 155 ~~~i~~-~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~---~~~~a---~~~L~~ 227 (323)
....++ ...++.++.-+.+.++.++..|+..|..+..-.....-..-.|.+..++..+.+.+ .++.+ -..|..
T Consensus 242 ~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~ 321 (675)
T KOG0212|consen 242 SPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLK 321 (675)
T ss_pred CccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHH
Confidence 333324 56789999999999999999999999888765554444444566677777776552 22222 233455
Q ss_pred HhcCHHHHHHHHhcC-CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHH
Q 020640 228 LSTNHRAVEEIGDLG-GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKA 306 (323)
Q Consensus 228 l~~~~~~~~~i~~~g-~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A 306 (323)
+...+...+. ++-| .+..+.+.+.++. ...+..+..-+..|-...|+. -+.......+.|++-+.+.++++...+
T Consensus 322 l~s~~~~~~~-id~~~ii~vl~~~l~~~~-~~tri~~L~Wi~~l~~~~p~q--l~~h~~~if~tLL~tLsd~sd~vvl~~ 397 (675)
T KOG0212|consen 322 LVSSERLKEE-IDYGSIIEVLTKYLSDDR-EETRIAVLNWIILLYHKAPGQ--LLVHNDSIFLTLLKTLSDRSDEVVLLA 397 (675)
T ss_pred HHhhhhhccc-cchHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHhhCcch--hhhhccHHHHHHHHhhcCchhHHHHHH
Confidence 5555555444 4444 5778888888554 888999998888888887774 333356888999999999999999999
Q ss_pred HHHHHHHhcchhhccC
Q 020640 307 TGILERLKRTVNLTHT 322 (323)
Q Consensus 307 ~~~L~~l~~~~~~~~~ 322 (323)
..++..++......|+
T Consensus 398 L~lla~i~~s~~~~~~ 413 (675)
T KOG0212|consen 398 LSLLASICSSSNSPNL 413 (675)
T ss_pred HHHHHHHhcCcccccH
Confidence 9999999988776654
No 80
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.0013 Score=65.85 Aligned_cols=140 Identities=19% Similarity=0.170 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHhc-CCCCchhhhhc----cCChHHHHHHhhh-cCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHH
Q 020640 135 IETRSNAAAALFTLS-ALDSNKEVIGK----SGALKPLIDLLDE-GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVI 208 (323)
Q Consensus 135 ~~~~~~a~~~L~~L~-~~~~~~~~i~~----~g~i~~Lv~lL~~-~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~L 208 (323)
.+-...+..+|.|+- .+++....+.. -|-.+.+..++.. +++.+...|+..+..++.+.+....+++.|++..|
T Consensus 1739 ~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~L 1818 (2235)
T KOG1789|consen 1739 ETKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTL 1818 (2235)
T ss_pred HHHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHH
Confidence 345667899999985 45544444433 4566777777776 57889999999999999999999999999999999
Q ss_pred HHHhhcC-chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccC
Q 020640 209 LKKIMDG-VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSD 274 (323)
Q Consensus 209 v~ll~~~-~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~ 274 (323)
+.+|.+- ..++.++.+|..|+++++...+..++|++..+..++-....+..+.+++..+..|..+.
T Consensus 1819 L~lLHS~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1819 LTLLHSQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred HHHHhcChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhcc
Confidence 9999876 78999999999999999999999999999999999976665888888999999987754
No 81
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.64 E-value=0.0018 Score=55.50 Aligned_cols=182 Identities=15% Similarity=0.079 Sum_probs=111.3
Q ss_pred cCCHHHHHHHHHHHHHhcCCC---Cchhhhhc--cCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchH
Q 020640 132 SGTIETRSNAAAALFTLSALD---SNKEVIGK--SGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVS 206 (323)
Q Consensus 132 ~~~~~~~~~a~~~L~~L~~~~---~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~ 206 (323)
+.+=+.+..++.-|..+.... .....+.+ ...+..+...+.+....+...|+.++..|+..-.....-.-...+|
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~ 97 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLP 97 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 345566777788888876433 33344433 2455677777777777899999999999987654444333334788
Q ss_pred HHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccCh---HhHHHH
Q 020640 207 VILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR---TKWKAM 281 (323)
Q Consensus 207 ~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~---~~~~~~ 281 (323)
.|++.+.++ .+++.|..+|..++..-..-..+. +..+...+.+ .++.++..++..+..+....+ .....-
T Consensus 98 ~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~----~~~l~~~~~~-Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~ 172 (228)
T PF12348_consen 98 PLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL----LEILSQGLKS-KNPQVREECAEWLAIILEKWGSDSSVLQKS 172 (228)
T ss_dssp HHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH----HHHHHHHTT--S-HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH----HHHHHHHHhC-CCHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence 898888876 578888888888888533111221 3445555564 459999999999999877665 111111
Q ss_pred HhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchh
Q 020640 282 REEESTHGTISKLAQDGTARAKRKATGILERLKRTVN 318 (323)
Q Consensus 282 ~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 318 (323)
..-...++.+.+.+.+.++++++.|..++..+.++.+
T Consensus 173 ~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 173 AFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 1013578888899999999999999999999987654
No 82
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.63 E-value=0.012 Score=54.84 Aligned_cols=191 Identities=17% Similarity=0.093 Sum_probs=128.5
Q ss_pred CCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Q 020640 73 DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD 152 (323)
Q Consensus 73 g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~ 152 (323)
.+++.|+..|.. ++++++...++.++... . ...++..|+..+.+.++.++..++.+|..+
T Consensus 54 ~a~~~L~~aL~~-----d~~~ev~~~aa~al~~~--~---------~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i---- 113 (410)
T TIGR02270 54 AATELLVSALAE-----ADEPGRVACAALALLAQ--E---------DALDLRSVLAVLQAGPEGLCAGIQAALGWL---- 113 (410)
T ss_pred hHHHHHHHHHhh-----CCChhHHHHHHHHHhcc--C---------ChHHHHHHHHHhcCCCHHHHHHHHHHHhcC----
Confidence 468888888853 45667666555544322 1 111378899999999999999999998754
Q ss_pred CchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc
Q 020640 153 SNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST 230 (323)
Q Consensus 153 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~ 230 (323)
......+.|+.+|.++++.++..++.++... .....+.+..+|++. .++..|+++|..+-.
T Consensus 114 ------~~~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~ 176 (410)
T TIGR02270 114 ------GGRQAEPWLEPLLAASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRALGELPR 176 (410)
T ss_pred ------CchHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc
Confidence 3345789999999999999999888877661 123456788888766 678999998887654
Q ss_pred CHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHH------------------HH---hhcccHH
Q 020640 231 NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKA------------------MR---EEESTHG 289 (323)
Q Consensus 231 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~------------------~~---~~~~~i~ 289 (323)
...++.|...+.+. ++.++..|+..+..+... ..... ++ .....++
T Consensus 177 ----------~~a~~~L~~al~d~-~~~VR~aA~~al~~lG~~--~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~ 243 (410)
T TIGR02270 177 ----------RLSESTLRLYLRDS-DPEVRFAALEAGLLAGSR--LAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQA 243 (410)
T ss_pred ----------ccchHHHHHHHcCC-CHHHHHHHHHHHHHcCCH--hHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHH
Confidence 23455567667754 488999999888776431 11111 11 1224555
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640 290 TISKLAQDGTARAKRKATGILERLKR 315 (323)
Q Consensus 290 ~L~~ll~~~~~~~~~~A~~~L~~l~~ 315 (323)
.|..++++. .++..+..+|-.+..
T Consensus 244 ~L~~ll~d~--~vr~~a~~AlG~lg~ 267 (410)
T TIGR02270 244 WLRELLQAA--ATRREALRAVGLVGD 267 (410)
T ss_pred HHHHHhcCh--hhHHHHHHHHHHcCC
Confidence 666666653 378888877776654
No 83
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.60 E-value=0.00032 Score=50.33 Aligned_cols=87 Identities=29% Similarity=0.400 Sum_probs=69.2
Q ss_pred HHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCc
Q 020640 75 IPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN 154 (323)
Q Consensus 75 i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~ 154 (323)
||.|++.|.. ++++.++..++.+|..+-. ..+++.|+.+++++++.++..++.+|..+.
T Consensus 1 i~~L~~~l~~-----~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----- 59 (88)
T PF13646_consen 1 IPALLQLLQN-----DPDPQVRAEAARALGELGD-----------PEAIPALIELLKDEDPMVRRAAARALGRIG----- 59 (88)
T ss_dssp HHHHHHHHHT-----SSSHHHHHHHHHHHHCCTH-----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----
T ss_pred CHHHHHHHhc-----CCCHHHHHHHHHHHHHcCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----
Confidence 6789998842 7789999999999985421 125889999999999999999999999872
Q ss_pred hhhhhccCChHHHHHHhhhc-CHhHHHHHHHHHH
Q 020640 155 KEVIGKSGALKPLIDLLDEG-HQSAMKDVASAIF 187 (323)
Q Consensus 155 ~~~i~~~g~i~~Lv~lL~~~-~~~~~~~al~aL~ 187 (323)
...+++.|.+++.++ +..++..|..+|.
T Consensus 60 -----~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -----DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -----HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 344899999999886 5556888888774
No 84
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.60 E-value=0.00011 Score=44.48 Aligned_cols=40 Identities=30% Similarity=0.485 Sum_probs=36.0
Q ss_pred CCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhcc
Q 020640 152 DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCI 191 (323)
Q Consensus 152 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~ 191 (323)
++++..+++.|+++.|++++.++++.++..++++|+||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3467888899999999999999999999999999999973
No 85
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.60 E-value=0.0084 Score=59.70 Aligned_cols=271 Identities=14% Similarity=0.098 Sum_probs=160.7
Q ss_pred hhhhhHHHHHHHHhc---CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHH
Q 020640 27 EADRDHFLSLLKKMS---ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTL 103 (323)
Q Consensus 27 ~~~~~~i~~Lv~~l~---~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L 103 (323)
|.....+...+..|. .|+++|+.|+.++..+...-.+.-.... ..+++.+++-|. ++..+-.|++++
T Consensus 564 ~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL--~~~L~il~eRl~--------nEiTRl~AvkAl 633 (1233)
T KOG1824|consen 564 PYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNEL--PRTLPILLERLG--------NEITRLTAVKAL 633 (1233)
T ss_pred hhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhh--HHHHHHHHHHHh--------chhHHHHHHHHH
Confidence 344445666667773 5688999999998887754333222111 235666777666 567888899999
Q ss_pred HHhccccc--hhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC--CchhhhhccCChHHHHHHhhhcCHhHH
Q 020640 104 LNLSIHDN--NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD--SNKEVIGKSGALKPLIDLLDEGHQSAM 179 (323)
Q Consensus 104 ~~ls~~~~--~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~ 179 (323)
..++...- +...+... +++.+...++......+.....++-.|..+- .......+. ++..+..++.+.+..+.
T Consensus 634 t~Ia~S~l~i~l~~~l~~--il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~-vL~el~~Lisesdlhvt 710 (1233)
T KOG1824|consen 634 TLIAMSPLDIDLSPVLTE--ILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEA-VLVELPPLISESDLHVT 710 (1233)
T ss_pred HHHHhccceeehhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH-HHHHhhhhhhHHHHHHH
Confidence 88876544 44444443 5888888888877777777777777665322 222222322 55666677777788889
Q ss_pred HHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcCchHHHHHHHH----HHHhc----------------CH--H----
Q 020640 180 KDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAIL----AMLST----------------NH--R---- 233 (323)
Q Consensus 180 ~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L----~~l~~----------------~~--~---- 233 (323)
..|..+|..+.........-+..-.++.++.+++++-++-.++.++ ..+.. .| +
T Consensus 711 ~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~ 790 (1233)
T KOG1824|consen 711 QLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTD 790 (1233)
T ss_pred HHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCccccccc
Confidence 9999999988887765554445556677777776652211111111 01100 00 0
Q ss_pred ------------HHHHH---Hh-c--CCHHHHH-HHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHH
Q 020640 234 ------------AVEEI---GD-L--GGVSCML-RIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKL 294 (323)
Q Consensus 234 ------------~~~~i---~~-~--g~i~~Lv-~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~l 294 (323)
+...+ .. . .....|+ ++.....++..+.-|.-.|..+.++-+... ..+.-..+++-
T Consensus 791 ~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~-----~~e~~~~iiea 865 (1233)
T KOG1824|consen 791 GLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSP-----QNELKDTIIEA 865 (1233)
T ss_pred chhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCc-----chhhHHHHHHH
Confidence 00000 00 0 1233333 233223346667777777777766543211 12344467777
Q ss_pred hhcCCHHHHHHHHHHHHHHhc
Q 020640 295 AQDGTARAKRKATGILERLKR 315 (323)
Q Consensus 295 l~~~~~~~~~~A~~~L~~l~~ 315 (323)
..+.+++++..|+-+|-+++.
T Consensus 866 f~sp~edvksAAs~ALGsl~v 886 (1233)
T KOG1824|consen 866 FNSPSEDVKSAASYALGSLAV 886 (1233)
T ss_pred cCCChHHHHHHHHHHhhhhhc
Confidence 888899999999999888764
No 86
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.60 E-value=0.0079 Score=52.96 Aligned_cols=223 Identities=12% Similarity=0.037 Sum_probs=151.2
Q ss_pred chhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcH
Q 020640 44 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVI 123 (323)
Q Consensus 44 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i 123 (323)
+-++.-|+.++.++.- .+++|..+-....+--.++.+++.+ -.+.++|-+.+-+++.++..++....+-+....+
T Consensus 163 ~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~----vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli 237 (432)
T COG5231 163 FLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNY----VGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLI 237 (432)
T ss_pred HHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhh----hhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4578889999999995 6888887655255667788888865 3367899999999999998887664444433356
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhcCCC--CchhhhhccCChHHHHHHhhhc---CHhHHHHHHHH------------
Q 020640 124 PLLMDALRSG-TIETRSNAAAALFTLSALD--SNKEVIGKSGALKPLIDLLDEG---HQSAMKDVASA------------ 185 (323)
Q Consensus 124 ~~Lv~ll~~~-~~~~~~~a~~~L~~L~~~~--~~~~~i~~~g~i~~Lv~lL~~~---~~~~~~~al~a------------ 185 (323)
.-++.+.+.. .+.+..-+++++.|++... .....+.-.|-+.+-++.|.++ +++++...-+.
T Consensus 238 ~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~ 317 (432)
T COG5231 238 NDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLC 317 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhh
Confidence 6677777764 5677888999999997622 2333344456566777777653 33333222111
Q ss_pred -----HHH-----hccCC---------chhHHHHhh--CchHHHHHHhhcC---chHHHHHHHHHHHhc-CHHHHHHHHh
Q 020640 186 -----IFN-----LCITH---------ENKARAVRD--GGVSVILKKIMDG---VHVDELLAILAMLST-NHRAVEEIGD 240 (323)
Q Consensus 186 -----L~~-----L~~~~---------~~~~~i~~~--g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~-~~~~~~~i~~ 240 (323)
+.. |+.++ +|..++.+. ..+..|.++++.. .....||.-+..+.. .|+.+..+.+
T Consensus 318 ~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~K 397 (432)
T COG5231 318 IFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSK 397 (432)
T ss_pred HHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHH
Confidence 111 12222 233444433 4667788888865 234445655555555 6999999999
Q ss_pred cCCHHHHHHHHhccCChhHHHHHHHHHHHhcc
Q 020640 241 LGGVSCMLRIIRESTCDRNKENCIAILHTICL 272 (323)
Q Consensus 241 ~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~ 272 (323)
.|+=+.++.++.+++ ++++-.|..++..+..
T Consensus 398 yg~k~~im~L~nh~d-~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 398 YGVKEIIMNLINHDD-DDVKFEALQALQTCIS 428 (432)
T ss_pred hhhHHHHHHHhcCCC-chhhHHHHHHHHHHHh
Confidence 999999999999665 9999999999887644
No 87
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.59 E-value=0.00037 Score=50.00 Aligned_cols=84 Identities=25% Similarity=0.334 Sum_probs=66.6
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHh
Q 020640 123 IPLLMDAL-RSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVR 201 (323)
Q Consensus 123 i~~Lv~ll-~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~ 201 (323)
++.|++.+ +++++.++..++.+|..+. ...+++.|+++++++++.++..|+.+|..+- .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 57788988 7889999999999998442 2247999999999999999999999999761 3
Q ss_pred hCchHHHHHHhhcC---chHHHHHHHHH
Q 020640 202 DGGVSVILKKIMDG---VHVDELLAILA 226 (323)
Q Consensus 202 ~g~v~~Lv~ll~~~---~~~~~a~~~L~ 226 (323)
..+++.|.+++.++ .++..|+.+|.
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 34888999999865 35777777663
No 88
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.019 Score=50.82 Aligned_cols=261 Identities=12% Similarity=0.089 Sum_probs=167.6
Q ss_pred chhHHHHHHHHHHHhccChhh--H--HHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhcc
Q 020640 44 LPDQTEAAKELRLLTKRMPSF--R--ALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAET 119 (323)
Q Consensus 44 ~~~~~~a~~~L~~l~~~~~~~--~--~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~ 119 (323)
..++.-++..+..+..+.+.+ . ..+++ .|..+.++...- .+|.++...|...+..++..++....++++
T Consensus 96 asVKiLackqigcilEdcDtnaVseillvvN-aeilklildcIg------geddeVAkAAiesikrialfpaaleaiFeS 168 (524)
T KOG4413|consen 96 ASVKILACKQIGCILEDCDTNAVSEILLVVN-AEILKLILDCIG------GEDDEVAKAAIESIKRIALFPAALEAIFES 168 (524)
T ss_pred chhhhhhHhhhhHHHhcCchhhHHHHHHHhh-hhHHHHHHHHHc------CCcHHHHHHHHHHHHHHHhcHHHHHHhccc
Confidence 345555666666655444422 1 22446 888899999887 778999999999999999998888888875
Q ss_pred CCcHH--HHHHHHhcCCHHHHHHHHHHHHHhc-CCCCchhhhhccCChHHHHHHhhh-cCHhHHHHHHHHHHHhccCCch
Q 020640 120 PMVIP--LLMDALRSGTIETRSNAAAALFTLS-ALDSNKEVIGKSGALKPLIDLLDE-GHQSAMKDVASAIFNLCITHEN 195 (323)
Q Consensus 120 ~g~i~--~Lv~ll~~~~~~~~~~a~~~L~~L~-~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~al~aL~~L~~~~~~ 195 (323)
. ... .+.++.-..+.-.+......+-.+. ..++.....-..|.+..|..=++. .+.-++..++.....|+.....
T Consensus 169 e-llDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHg 247 (524)
T KOG4413|consen 169 E-LLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHG 247 (524)
T ss_pred c-cCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhh
Confidence 4 222 2333433445555666666666664 444555555567877777766665 4667888999999999998888
Q ss_pred hHHHHhhCchHHHHHHhhcC--ch--HHHHHHHHH----HHhcCHHHHHHHHhc--CCHHHHHHHHhccCChhHHHHHHH
Q 020640 196 KARAVRDGGVSVILKKIMDG--VH--VDELLAILA----MLSTNHRAVEEIGDL--GGVSCMLRIIRESTCDRNKENCIA 265 (323)
Q Consensus 196 ~~~i~~~g~v~~Lv~ll~~~--~~--~~~a~~~L~----~l~~~~~~~~~i~~~--g~i~~Lv~ll~~~~~~~~~~~a~~ 265 (323)
+..+.+.|.++.+..++... ++ +..++.... +.+..+-.-+.+++. -.|....+++...+ +..++.|..
T Consensus 248 reflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnD-pdaieaAiD 326 (524)
T KOG4413|consen 248 REFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMND-PDAIEAAID 326 (524)
T ss_pred hhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCC-chHHHHHHH
Confidence 88888999999999888632 22 333433333 333222222333332 24666677777554 889999999
Q ss_pred HHHHhcccChHhHHHHHhhccc--HHHHHHHhhcC-CHHHHHHHHHHHHHHhc
Q 020640 266 ILHTICLSDRTKWKAMREEEST--HGTISKLAQDG-TARAKRKATGILERLKR 315 (323)
Q Consensus 266 ~L~~L~~~~~~~~~~~~~~~~~--i~~L~~ll~~~-~~~~~~~A~~~L~~l~~ 315 (323)
++..+.++.++ +.++...|- ...|+.-..+. ..--++.+..+|.+++.
T Consensus 327 alGilGSnteG--adlllkTgppaaehllarafdqnahakqeaaihaLaaIag 377 (524)
T KOG4413|consen 327 ALGILGSNTEG--ADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAG 377 (524)
T ss_pred HHHhccCCcch--hHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhc
Confidence 99999998876 355443332 22233323333 33335566667776654
No 89
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.029 Score=55.10 Aligned_cols=266 Identities=12% Similarity=0.119 Sum_probs=122.1
Q ss_pred hhHHHHHHHHhc-----CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHH
Q 020640 30 RDHFLSLLKKMS-----ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLL 104 (323)
Q Consensus 30 ~~~i~~Lv~~l~-----~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~ 104 (323)
++++--+...++ ++..+..-|+.+|.+++. ++.. ....|.+.++|+ ..++.++.+|+.+..
T Consensus 102 qdvllLltNslknDL~s~nq~vVglAL~alg~i~s--~Ema------rdlapeVe~Ll~------~~~~~irKKA~Lca~ 167 (866)
T KOG1062|consen 102 QDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICS--PEMA------RDLAPEVERLLQ------HRDPYIRKKAALCAV 167 (866)
T ss_pred hHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCC--HHHh------HHhhHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 344444444442 335556667777777762 3332 224444555566 446666666666555
Q ss_pred Hhccc-cc--------hhhhhhcc-CCc----HHHHHHHHhcC------CHHHHHHHHHHHHHhcCCC---Cc-----hh
Q 020640 105 NLSIH-DN--------NKKLVAET-PMV----IPLLMDALRSG------TIETRSNAAAALFTLSALD---SN-----KE 156 (323)
Q Consensus 105 ~ls~~-~~--------~~~~i~~~-~g~----i~~Lv~ll~~~------~~~~~~~a~~~L~~L~~~~---~~-----~~ 156 (323)
.+=.. ++ .+..+.++ .|+ +..+..+++.+ -.++...-+.+|.++.... +. ..
T Consensus 168 r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~d 247 (866)
T KOG1062|consen 168 RFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISD 247 (866)
T ss_pred HHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCc
Confidence 44221 11 12222221 122 33344444332 1234444556666664211 10 01
Q ss_pred hhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCc---hhHHHHhhCchHHHHHHhhcCchHHHHHHHHHHHhcCHH
Q 020640 157 VIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHE---NKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHR 233 (323)
Q Consensus 157 ~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~---~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~l~~~~~ 233 (323)
.+.+.. +-.++++|-.++++....-...|..++...+ |....+=...|..++.+..++.++..|+.+|...-.+++
T Consensus 248 PFLQi~-iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d 326 (866)
T KOG1062|consen 248 PFLQIR-ILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRD 326 (866)
T ss_pred hHHHHH-HHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCc
Confidence 111110 1123344445566666666666666655443 222222222444444444444455555555444444321
Q ss_pred HHHH---------HHhc--CC----HHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcC
Q 020640 234 AVEE---------IGDL--GG----VSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG 298 (323)
Q Consensus 234 ~~~~---------i~~~--g~----i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~ 298 (323)
+--+ +++. .+ =..+++.+++.+ ..+|+.|...+..|...+ +.+.++ ..|++++.+.
T Consensus 327 ~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD-~SIkrralELs~~lvn~~--Nv~~mv------~eLl~fL~~~ 397 (866)
T KOG1062|consen 327 NNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPD-VSIKRRALELSYALVNES--NVRVMV------KELLEFLESS 397 (866)
T ss_pred cceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHhccc--cHHHHH------HHHHHHHHhc
Confidence 1100 0000 00 134566677544 777888888888877765 344443 4566777666
Q ss_pred CHHHHHHHHHHHHHHh-cchhh
Q 020640 299 TARAKRKATGILERLK-RTVNL 319 (323)
Q Consensus 299 ~~~~~~~A~~~L~~l~-~~~~~ 319 (323)
++..+...+.-+.-+. +|++-
T Consensus 398 d~~~k~~~as~I~~laEkfaP~ 419 (866)
T KOG1062|consen 398 DEDFKADIASKIAELAEKFAPD 419 (866)
T ss_pred cHHHHHHHHHHHHHHHHhcCCc
Confidence 6666544443333333 45553
No 90
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.062 Score=54.56 Aligned_cols=242 Identities=14% Similarity=0.120 Sum_probs=154.5
Q ss_pred CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCC
Q 020640 42 ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPM 121 (323)
Q Consensus 42 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g 121 (323)
.++.++.-|+..+..++. +.+.-..+.+ .|.+-.|+.+|.+ .|..+..++.+|+.|+....-...-.+.||
T Consensus 1784 ~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~-~~vL~~LL~lLHS-------~PS~R~~vL~vLYAL~S~~~i~keA~~hg~ 1854 (2235)
T KOG1789|consen 1784 KHPKLQILALQVILLATA-NKECVTDLAT-CNVLTTLLTLLHS-------QPSMRARVLDVLYALSSNGQIGKEALEHGG 1854 (2235)
T ss_pred CCchHHHHHHHHHHHHhc-ccHHHHHHHh-hhHHHHHHHHHhc-------ChHHHHHHHHHHHHHhcCcHHHHHHHhcCc
Confidence 456678888888888885 6667788888 8888888888874 478899999999999988776555566676
Q ss_pred cHHHHHHHHh-cCCHHHHHHHHHHHHHhcCCCC--chhhh-------------hccCChHHHHHHhhhc--C------Hh
Q 020640 122 VIPLLMDALR-SGTIETRSNAAAALFTLSALDS--NKEVI-------------GKSGALKPLIDLLDEG--H------QS 177 (323)
Q Consensus 122 ~i~~Lv~ll~-~~~~~~~~~a~~~L~~L~~~~~--~~~~i-------------~~~g~i~~Lv~lL~~~--~------~~ 177 (323)
+..+..++. +.++..+..++..+..|..+.- .+..| .+. .-+..+.++... + +.
T Consensus 1855 -l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD-~PEAaVH~fE~T~EnPELiWn~~ 1932 (2235)
T KOG1789|consen 1855 -LMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRD-SPEAAVHMFESTSENPELIWNEV 1932 (2235)
T ss_pred -hhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhc-CHHHHHHHHhccCCCcccccCHh
Confidence 445665554 4567788888888888754321 11100 111 112233332210 0 00
Q ss_pred HHHHHHHHH--------------------------------------------------------------------HHh
Q 020640 178 AMKDVASAI--------------------------------------------------------------------FNL 189 (323)
Q Consensus 178 ~~~~al~aL--------------------------------------------------------------------~~L 189 (323)
.+......+ ..+
T Consensus 1933 ~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm 2012 (2235)
T KOG1789|consen 1933 TRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELM 2012 (2235)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHh
Confidence 111111111 111
Q ss_pred ccC--------------------C-chhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHH
Q 020640 190 CIT--------------------H-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSC 246 (323)
Q Consensus 190 ~~~--------------------~-~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~ 246 (323)
+.. . .-..++-..|.+|.++..+.-. ..-..|+++|..|+.+.-+.+++.....+..
T Consensus 2013 ~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~ 2092 (2235)
T KOG1789|consen 2013 SRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQLPCIDG 2092 (2235)
T ss_pred cCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhccccchh
Confidence 111 1 1111122336666666665532 3447789999999999999999999888888
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhcccChH-hHHHHHhhcccHHHHHHHhhc
Q 020640 247 MLRIIRESTCDRNKENCIAILHTICLSDRT-KWKAMREEESTHGTISKLAQD 297 (323)
Q Consensus 247 Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~-~~~~~~~~~~~i~~L~~ll~~ 297 (323)
++..++- . ..+---|+.+|-.+...+.+ .+.+.+ +.|.++.|++++..
T Consensus 2093 ~m~~mkK-~-~~~~GLA~EalkR~~~r~~~eLVAQ~L-K~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2093 IMKSMKK-Q-PSLMGLAAEALKRLMKRNTGELVAQML-KCGLVPYLLQLLDS 2141 (2235)
T ss_pred hHHHHHh-c-chHHHHHHHHHHHHHHHhHHHHHHHHh-ccCcHHHHHHHhcc
Confidence 9988873 2 55666888999888876544 344555 58999999999865
No 91
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.42 E-value=0.0013 Score=56.40 Aligned_cols=187 Identities=10% Similarity=0.065 Sum_probs=111.6
Q ss_pred CCCHHHHHHHHHHHHHhcccc---chhhhhhcc-CCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChH
Q 020640 90 GINPNLQEDVITTLLNLSIHD---NNKKLVAET-PMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALK 165 (323)
Q Consensus 90 ~~~~~~~~~a~~~L~~ls~~~---~~~~~i~~~-~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~ 165 (323)
+.+.+.+..|+.-|..+.... +....+... ..++..+...+.+....+...|+.++..++..-...-.-.-...+|
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~ 97 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLP 97 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 678999999999999887655 233333331 1134456666666677888999999999985433322212244789
Q ss_pred HHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHh--
Q 020640 166 PLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGD-- 240 (323)
Q Consensus 166 ~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~-- 240 (323)
.|++.+.++...++..|..+|..++........+ .++.+...+.+. .++..++..+..+... +.....+-.
T Consensus 98 ~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~ 173 (228)
T PF12348_consen 98 PLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSA 173 (228)
T ss_dssp HHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HH
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccc
Confidence 9999999998999999999999998765522222 123445555554 5788888888887663 311111111
Q ss_pred --cCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHH
Q 020640 241 --LGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAM 281 (323)
Q Consensus 241 --~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~ 281 (323)
..+++.+...+.+++ +.+++.|-.+++.+...-++....+
T Consensus 174 ~~~~l~~~l~~~l~D~~-~~VR~~Ar~~~~~l~~~~~~~a~~~ 215 (228)
T PF12348_consen 174 FLKQLVKALVKLLSDAD-PEVREAARECLWALYSHFPERAESI 215 (228)
T ss_dssp HHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHHH-HHH---
T ss_pred hHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHCCHhhccc
Confidence 235778888888765 9999999999999988776543333
No 92
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.41 E-value=0.00042 Score=41.85 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=35.5
Q ss_pred hhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc
Q 020640 62 PSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 108 (323)
Q Consensus 62 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~ 108 (323)
++++..+.+ .|+++.|+++|. +++++++..++.+|+|++.
T Consensus 2 ~~~~~~i~~-~g~i~~L~~ll~------~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVD-AGGLPALVELLK------SEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHH-CCCHHHHHHHHc------CCCHHHHHHHHHHHHHHcC
Confidence 347788889 999999999999 6789999999999999973
No 93
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.41 E-value=0.0066 Score=48.44 Aligned_cols=121 Identities=17% Similarity=0.189 Sum_probs=94.5
Q ss_pred hhhhhccCChHHHHHHhhhcC------HhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC----chHHHHHHH
Q 020640 155 KEVIGKSGALKPLIDLLDEGH------QSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG----VHVDELLAI 224 (323)
Q Consensus 155 ~~~i~~~g~i~~Lv~lL~~~~------~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~----~~~~~a~~~ 224 (323)
..++...||+..|++++.++. .+....++.++..|-.++-.-...++...+..++.+.... .+...|+.+
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 346677889999999999875 4778889999988877765455666666788888888744 578899999
Q ss_pred HHHHhcCHHHHHHHH-hcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChH
Q 020640 225 LAMLSTNHRAVEEIG-DLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT 276 (323)
Q Consensus 225 L~~l~~~~~~~~~i~-~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~ 276 (323)
|.++..++...-..+ ++=-++.|+.+++.+ ++.++.+|...+-.|....++
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~-~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVS-NQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcC-CHHHHHHHHHHHHHHHhcCCh
Confidence 999999766544444 445699999999965 489999999999888765544
No 94
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.047 Score=53.69 Aligned_cols=264 Identities=15% Similarity=0.125 Sum_probs=141.5
Q ss_pred hhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640 28 ADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 106 (323)
Q Consensus 28 ~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l 106 (323)
+..|-+. .++++. ++-..++-.-...+-+-..+.+.-..+ ...|.+=|+ +.+.-++-.|+.+|.++
T Consensus 68 ahFGqie-clKLias~~f~dKRiGYLaamLlLdE~qdvllLl------tNslknDL~------s~nq~vVglAL~alg~i 134 (866)
T KOG1062|consen 68 AHFGQIE-CLKLIASDNFLDKRIGYLAAMLLLDERQDLLLLL------TNSLKNDLN------SSNQYVVGLALCALGNI 134 (866)
T ss_pred ccchhhH-HHHHhcCCCchHHHHHHHHHHHHhccchHHHHHH------HHHHHhhcc------CCCeeehHHHHHHhhcc
Confidence 3334443 456665 444445555555555553322211111 223444455 67888899999999999
Q ss_pred ccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-C--------chhhhhc------cCChHHHHHHh
Q 020640 107 SIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD-S--------NKEVIGK------SGALKPLIDLL 171 (323)
Q Consensus 107 s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~-~--------~~~~i~~------~g~i~~Lv~lL 171 (323)
+..+ +... +.|.+.+++++.++-+++.|+-+...+-.-. + .+..+.+ .+++..+.+++
T Consensus 135 ~s~E-----mard--lapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c 207 (866)
T KOG1062|consen 135 CSPE-----MARD--LAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELC 207 (866)
T ss_pred CCHH-----HhHH--hhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHH
Confidence 7532 3321 5677888999999999999888888765322 2 2333322 33456666666
Q ss_pred hhc------CHhHHHHHHHHHHHhccCCc--------hhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHH--
Q 020640 172 DEG------HQSAMKDVASAIFNLCITHE--------NKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHR-- 233 (323)
Q Consensus 172 ~~~------~~~~~~~al~aL~~L~~~~~--------~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~-- 233 (323)
..+ ...+...-...|.++....- ....+++-. +-.++++|..+ +..+....+|+.++.+-+
T Consensus 208 ~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~-iLrlLriLGq~d~daSd~M~DiLaqvatntdss 286 (866)
T KOG1062|consen 208 KISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIR-ILRLLRILGQNDADASDLMNDILAQVATNTDSS 286 (866)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHH-HHHHHHHhcCCCccHHHHHHHHHHHHHhccccc
Confidence 652 12344455566777654331 111122210 11234444433 567778888888887421
Q ss_pred ---HHHHHHh----------cC-----CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHh
Q 020640 234 ---AVEEIGD----------LG-----GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLA 295 (323)
Q Consensus 234 ---~~~~i~~----------~g-----~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll 295 (323)
+...+.+ ++ ++..|-+++...+ ..+|.-|+..|..+...++....+ =-..+++++
T Consensus 287 kN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d-~NirYvaLn~L~r~V~~d~~avqr------Hr~tIleCL 359 (866)
T KOG1062|consen 287 KNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRD-NNIRYVALNMLLRVVQQDPTAVQR------HRSTILECL 359 (866)
T ss_pred ccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCc-cceeeeehhhHHhhhcCCcHHHHH------HHHHHHHHh
Confidence 1111111 11 2333334444222 344444444444444444332111 123567888
Q ss_pred hcCCHHHHHHHHHHHHHHhcchhh
Q 020640 296 QDGTARAKRKATGILERLKRTVNL 319 (323)
Q Consensus 296 ~~~~~~~~~~A~~~L~~l~~~~~~ 319 (323)
++.++.++++|..++..|.....+
T Consensus 360 ~DpD~SIkrralELs~~lvn~~Nv 383 (866)
T KOG1062|consen 360 KDPDVSIKRRALELSYALVNESNV 383 (866)
T ss_pred cCCcHHHHHHHHHHHHHHhccccH
Confidence 989999999999998888765443
No 95
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.29 E-value=0.031 Score=50.80 Aligned_cols=189 Identities=18% Similarity=0.222 Sum_probs=123.9
Q ss_pred CCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Q 020640 73 DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD 152 (323)
Q Consensus 73 g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~ 152 (323)
..++.+..++. +++..++..++..+..+.. .-+++.+..++.+.++.++..++.+|..+-
T Consensus 43 ~~~~~~~~~l~------~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--- 102 (335)
T COG1413 43 EAADELLKLLE------DEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG--- 102 (335)
T ss_pred hhHHHHHHHHc------CCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC---
Confidence 46788888888 6688899988888655532 226888999999999999999999776663
Q ss_pred CchhhhhccCChHHHHHHhh-hcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcCchHHHHHHHHHHHhcC
Q 020640 153 SNKEVIGKSGALKPLIDLLD-EGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTN 231 (323)
Q Consensus 153 ~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~l~~~ 231 (323)
....++.|++++. +++..++..+..+|..+-. ..++..++..+++..... +...+ ....
T Consensus 103 -------~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~-a~~~~--~~~~ 162 (335)
T COG1413 103 -------DPEAVPPLVELLENDENEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGS-AAAAL--DAAL 162 (335)
T ss_pred -------ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhh-hhhhc--cchH
Confidence 2347999999999 5889999999999987622 223677888877653222 11111 0000
Q ss_pred HHHHHH----HHh---cCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHH
Q 020640 232 HRAVEE----IGD---LGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKR 304 (323)
Q Consensus 232 ~~~~~~----i~~---~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~ 304 (323)
-..|.. +.. .-.++.+..++.+.. ..++..|+.+|..+..... .....+...+.+.+..++.
T Consensus 163 ~~~r~~a~~~l~~~~~~~~~~~l~~~l~~~~-~~vr~~Aa~aL~~~~~~~~----------~~~~~l~~~~~~~~~~vr~ 231 (335)
T COG1413 163 LDVRAAAAEALGELGDPEAIPLLIELLEDED-ADVRRAAASALGQLGSENV----------EAADLLVKALSDESLEVRK 231 (335)
T ss_pred HHHHHHHHHHHHHcCChhhhHHHHHHHhCch-HHHHHHHHHHHHHhhcchh----------hHHHHHHHHhcCCCHHHHH
Confidence 012221 122 235788888888654 7889999999988877651 2334444555555555555
Q ss_pred HHHHHHHH
Q 020640 305 KATGILER 312 (323)
Q Consensus 305 ~A~~~L~~ 312 (323)
++...|..
T Consensus 232 ~~~~~l~~ 239 (335)
T COG1413 232 AALLALGE 239 (335)
T ss_pred HHHHHhcc
Confidence 55544433
No 96
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.28 E-value=0.088 Score=50.13 Aligned_cols=246 Identities=13% Similarity=0.158 Sum_probs=125.3
Q ss_pred chhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcH
Q 020640 44 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVI 123 (323)
Q Consensus 44 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i 123 (323)
..+..++++.+..++..+. -..+.+ ..+..|-.+|+ ++....+-.|..+|..|+.....+...+..
T Consensus 278 emV~lE~Ar~v~~~~~~nv--~~~~~~--~~vs~L~~fL~------s~rv~~rFsA~Riln~lam~~P~kv~vcN~---- 343 (898)
T COG5240 278 EMVFLEAARAVCALSEENV--GSQFVD--QTVSSLRTFLK------STRVVLRFSAMRILNQLAMKYPQKVSVCNK---- 343 (898)
T ss_pred hhhhHHHHHHHHHHHHhcc--CHHHHH--HHHHHHHHHHh------cchHHHHHHHHHHHHHHHhhCCceeeecCh----
Confidence 3456677777777665431 223333 34666666777 667888888999998887644433333221
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHH-----
Q 020640 124 PLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKAR----- 198 (323)
Q Consensus 124 ~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~----- 198 (323)
-+-.++.+.+..+...|+.+|..= ..+++...+ +..+..++++=+...+.-+..+++.||...+.+..
T Consensus 344 -evEsLIsd~Nr~IstyAITtLLKT-Gt~e~idrL-----v~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~F 416 (898)
T COG5240 344 -EVESLISDENRTISTYAITTLLKT-GTEETIDRL-----VNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDF 416 (898)
T ss_pred -hHHHHhhcccccchHHHHHHHHHc-CchhhHHHH-----HHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHH
Confidence 122333333333333333332221 112211111 11222222222333444444455555544433221
Q ss_pred ----HHhhCch-------HHHHHHhhc-CchHHHHHHHHHHHhcC---HHHHHHHH----hcC--------CHHHHHHHH
Q 020640 199 ----AVRDGGV-------SVILKKIMD-GVHVDELLAILAMLSTN---HRAVEEIG----DLG--------GVSCMLRII 251 (323)
Q Consensus 199 ----i~~~g~v-------~~Lv~ll~~-~~~~~~a~~~L~~l~~~---~~~~~~i~----~~g--------~i~~Lv~ll 251 (323)
+.+.|+. ..+.+++.. ++.++.|+..|+..-.+ ++....|. ++| .+.++..-+
T Consensus 417 L~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~ 496 (898)
T COG5240 417 LGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRL 496 (898)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHH
Confidence 1123333 233333332 25667666666655442 33333332 233 244444333
Q ss_pred hccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640 252 RESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 315 (323)
Q Consensus 252 ~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 315 (323)
--.+ ..++.+|+.+|...+.+-.+ .. ....+...|..++.+.++++++.|..+|+++..
T Consensus 497 iLEN-~ivRsaAv~aLskf~ln~~d---~~-~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 497 ILEN-NIVRSAAVQALSKFALNISD---VV-SPQSVENALKRCLNDQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred HHhh-hHHHHHHHHHHHHhccCccc---cc-cHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence 2233 77889999999877765533 11 123455666777787899999999999999863
No 97
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.27 E-value=0.0021 Score=47.39 Aligned_cols=66 Identities=17% Similarity=0.290 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHhc-CHHHHHHHHhcCCHHHHHHHHhc-cCChhHHHHHHHHHHHhcccChHhHHHHHh
Q 020640 217 HVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRE-STCDRNKENCIAILHTICLSDRTKWKAMRE 283 (323)
Q Consensus 217 ~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~ 283 (323)
.+...+++++|++. ++.+++.+.+.|+++.++....- .++|.+++.|..++.+|+..+++. ++++.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eN-Q~~I~ 69 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPEN-QEFIA 69 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHH-HHHHH
Confidence 46678899999999 58999999999999999987753 446889999999999999999875 34443
No 98
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.27 E-value=0.062 Score=52.55 Aligned_cols=150 Identities=13% Similarity=0.121 Sum_probs=98.8
Q ss_pred HHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhH---HHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640 32 HFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFR---ALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 107 (323)
Q Consensus 32 ~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~---~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls 107 (323)
.+...+..|+ .++.+|.+|+..+..++.--. .+ +.+.. .|. .|.+.|. .+++++.-..+.++..+.
T Consensus 800 i~stiL~rLnnksa~vRqqaadlis~la~Vlk-tc~ee~~m~~-lGv--vLyEylg------eeypEvLgsILgAikaI~ 869 (1172)
T KOG0213|consen 800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLK-TCGEEKLMGH-LGV--VLYEYLG------EEYPEVLGSILGAIKAIV 869 (1172)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHH-hccHHHHHHH-hhH--HHHHhcC------cccHHHHHHHHHHHHHHH
Confidence 3444555564 568889999988888774211 11 22333 443 2556666 778998888777777664
Q ss_pred cccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhc-cCChHHHHHHhhhcCHhHHHHHHHHH
Q 020640 108 IHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK-SGALKPLIDLLDEGHQSAMKDVASAI 186 (323)
Q Consensus 108 ~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~al~aL 186 (323)
..-.--+..--..+++|.|.-+|++.+..+++.++..+..++..........+ -.+--.|+++|++-+.+++.+|..++
T Consensus 870 nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTf 949 (1172)
T KOG0213|consen 870 NVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTF 949 (1172)
T ss_pred HhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 32221111111124799999999999999999999999999865443222222 23445788889988889999998888
Q ss_pred HHhcc
Q 020640 187 FNLCI 191 (323)
Q Consensus 187 ~~L~~ 191 (323)
..++.
T Consensus 950 G~Iak 954 (1172)
T KOG0213|consen 950 GYIAK 954 (1172)
T ss_pred hHHHH
Confidence 77654
No 99
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.22 E-value=0.001 Score=43.26 Aligned_cols=55 Identities=15% Similarity=0.056 Sum_probs=47.5
Q ss_pred hhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 020640 257 DRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERL 313 (323)
Q Consensus 257 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l 313 (323)
+.++..|+++|.+++...++..+..+ ...++.|..++.++++.++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~--~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL--PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH--HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 36899999999999988877666654 57999999999999999999999999865
No 100
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=97.21 E-value=0.0052 Score=51.06 Aligned_cols=120 Identities=11% Similarity=0.066 Sum_probs=87.5
Q ss_pred cCHhHHHHHHHHHHHhccCCchhHHHHhh----------------CchHHHHHHhhcC--------chHHHHHHHHHHHh
Q 020640 174 GHQSAMKDVASAIFNLCITHENKARAVRD----------------GGVSVILKKIMDG--------VHVDELLAILAMLS 229 (323)
Q Consensus 174 ~~~~~~~~al~aL~~L~~~~~~~~~i~~~----------------g~v~~Lv~ll~~~--------~~~~~a~~~L~~l~ 229 (323)
++......++..|.||+..++.+..+++. .++..|+..+..+ ........+|+|++
T Consensus 7 ~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS 86 (192)
T PF04063_consen 7 PKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS 86 (192)
T ss_pred CCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence 34456777899999999998888766543 2567788877662 34677899999999
Q ss_pred cCHHHHHHHHhc--CC--HHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhc--ccHHHHHHHh
Q 020640 230 TNHRAVEEIGDL--GG--VSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEE--STHGTISKLA 295 (323)
Q Consensus 230 ~~~~~~~~i~~~--g~--i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~--~~i~~L~~ll 295 (323)
..+++|+.|.+. +. ++.|+.++... +..-+..+++++.|+|.+.+.+ ..++.+. ++++.|+--+
T Consensus 87 ~~~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPL 156 (192)
T PF04063_consen 87 QLPEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPL 156 (192)
T ss_pred CCHHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhc
Confidence 999999999865 45 78888888755 4767888999999999988653 4555422 4444444433
No 101
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.20 E-value=0.0099 Score=57.98 Aligned_cols=144 Identities=17% Similarity=0.100 Sum_probs=84.7
Q ss_pred HHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcccc
Q 020640 32 HFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD 110 (323)
Q Consensus 32 ~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~ 110 (323)
....+.+.++ +++.+|..|+.+..++-..++ ....+ .|.++.|-+++. ++++.+..+|+.+|..+...+
T Consensus 122 ~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~-~gl~~~L~~ll~------D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 122 LCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVED-SGLVDALKDLLS------DSNPMVVANALAALSEIHESH 191 (734)
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccc-cchhHHHHHHhc------CCCchHHHHHHHHHHHHHHhC
Confidence 3445666664 568889999999988886543 56677 899999999999 789999999999999886554
Q ss_pred chhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHh
Q 020640 111 NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNL 189 (323)
Q Consensus 111 ~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L 189 (323)
.+.....- ..+.+-.++..-+....+.-+.+|-.++.+..... .-....++.+...|...+..+...+...+.++
T Consensus 192 ~~~~~~~l---~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~ 266 (734)
T KOG1061|consen 192 PSVNLLEL---NPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQL 266 (734)
T ss_pred CCCCcccc---cHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHH
Confidence 43111111 12233334444455555566666666654332211 00011333444444444444444444444443
No 102
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.19 E-value=0.041 Score=52.58 Aligned_cols=245 Identities=10% Similarity=0.094 Sum_probs=144.8
Q ss_pred hhhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHH
Q 020640 27 EADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN 105 (323)
Q Consensus 27 ~~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ 105 (323)
|.....+|.++.... ....+|..|..+..-+...-..+. + .-.++.++.-+. .........++..+..
T Consensus 212 Pyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a---V--K~llpsll~~l~------~~kWrtK~aslellg~ 280 (569)
T KOG1242|consen 212 PYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYA---V--KLLLPSLLGSLL------EAKWRTKMASLELLGA 280 (569)
T ss_pred chHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcch---h--hHhhhhhHHHHH------HHhhhhHHHHHHHHHH
Confidence 333345555555553 335666665555555543322211 0 123444444343 2245778889999999
Q ss_pred hccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHH
Q 020640 106 LSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASA 185 (323)
Q Consensus 106 ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~a 185 (323)
++...+.+-..... .++|.+.+.|-+..+++++.+..++..++..-+|... . -.+|.|++.+.+++..+. .++..
T Consensus 281 m~~~ap~qLs~~lp-~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI-~--~~ip~Lld~l~dp~~~~~-e~~~~ 355 (569)
T KOG1242|consen 281 MADCAPKQLSLCLP-DLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI-Q--KIIPTLLDALADPSCYTP-ECLDS 355 (569)
T ss_pred HHHhchHHHHHHHh-HhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH-H--HHHHHHHHHhcCcccchH-HHHHh
Confidence 98877766666664 4899999999999999999999999999876666552 1 257777777777543332 34443
Q ss_pred HHHhccCCchhHHHHhhCchHHHHHHhh----cC--chHHHHHHHHHHHhcCHHHHHHHHh--cCCHHHHHHHHhccCCh
Q 020640 186 IFNLCITHENKARAVRDGGVSVILKKIM----DG--VHVDELLAILAMLSTNHRAVEEIGD--LGGVSCMLRIIRESTCD 257 (323)
Q Consensus 186 L~~L~~~~~~~~~i~~~g~v~~Lv~ll~----~~--~~~~~a~~~L~~l~~~~~~~~~i~~--~g~i~~Lv~ll~~~~~~ 257 (323)
|..=+.-.. ++.-.+..++.+++ +. ..++.++.+..|||+-=+....+.. -..++.|-..+.+. .+
T Consensus 356 L~~ttFV~~-----V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~-~P 429 (569)
T KOG1242|consen 356 LGATTFVAE-----VDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDA-VP 429 (569)
T ss_pred hcceeeeee-----ecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCC-Ch
Confidence 332222111 11123334444444 33 5788999999999984222222221 12355555555544 38
Q ss_pred hHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcC
Q 020640 258 RNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG 298 (323)
Q Consensus 258 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~ 298 (323)
.++.-++++|..+-.+-.+. .+ .+.++.|.+.+.+.
T Consensus 430 EvR~vaarAL~~l~e~~g~~--~f---~d~~p~l~e~~~~~ 465 (569)
T KOG1242|consen 430 EVRAVAARALGALLERLGEV--SF---DDLIPELSETLTSE 465 (569)
T ss_pred hHHHHHHHHHHHHHHHHHhh--cc---cccccHHHHhhccc
Confidence 89999999998776654221 11 45666666665433
No 103
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.18 E-value=0.062 Score=52.20 Aligned_cols=236 Identities=9% Similarity=0.092 Sum_probs=133.3
Q ss_pred chhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccc--hhhhhhccCC
Q 020640 44 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN--NKKLVAETPM 121 (323)
Q Consensus 44 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~--~~~~i~~~~g 121 (323)
..+|.+|+.+|..+-+.+++.. .. .+-.+.++.+|. +.+-.+...+...+..++...+ .+..+..
T Consensus 162 ~~vkqkaALclL~L~r~spDl~---~~-~~W~~riv~LL~------D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~--- 228 (938)
T KOG1077|consen 162 DYVKQKAALCLLRLFRKSPDLV---NP-GEWAQRIVHLLD------DQHMGVVTAATSLIEALVKKNPESYKTCLPL--- 228 (938)
T ss_pred HHHHHHHHHHHHHHHhcCcccc---Ch-hhHHHHHHHHhC------ccccceeeehHHHHHHHHHcCCHHHhhhHHH---
Confidence 4456666666666666666532 11 345677778777 4556666667777766665443 2222221
Q ss_pred cHHHHHHHHhc-------------CCHHHHHHHHHHHHHhcCCCC--chhhhhccCChHHHHHHhhhc--CHh-----HH
Q 020640 122 VIPLLMDALRS-------------GTIETRSNAAAALFTLSALDS--NKEVIGKSGALKPLIDLLDEG--HQS-----AM 179 (323)
Q Consensus 122 ~i~~Lv~ll~~-------------~~~~~~~~a~~~L~~L~~~~~--~~~~i~~~g~i~~Lv~lL~~~--~~~-----~~ 179 (323)
++..|.++... +.|=.+...+++|.+.-..++ .+..+.+ +++.++...+++ +.. ++
T Consensus 229 avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~ 306 (938)
T KOG1077|consen 229 AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAK 306 (938)
T ss_pred HHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhH
Confidence 23333333321 134455566666666632222 2333322 344444444421 111 11
Q ss_pred HHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCCh
Q 020640 180 KDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCD 257 (323)
Q Consensus 180 ~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~ 257 (323)
...+=-..+|+.+-+.-..++.. ++..|-.+|.+. +++.-++..++.|++++...+.+..+ .+.++..|+...+-
T Consensus 307 naVLFeaI~l~~h~D~e~~ll~~-~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDv 383 (938)
T KOG1077|consen 307 NAVLFEAISLAIHLDSEPELLSR-AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDV 383 (938)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccch
Confidence 11111123344433333333222 566788888766 68999999999999998777777766 68888888855557
Q ss_pred hHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHH
Q 020640 258 RNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRK 305 (323)
Q Consensus 258 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~ 305 (323)
.+++.|+..|+.+|..+. .+.++ .-|++.+.+-+..+++.
T Consensus 384 SirrravDLLY~mcD~~N--ak~IV------~elLqYL~tAd~siree 423 (938)
T KOG1077|consen 384 SIRRRAVDLLYAMCDVSN--AKQIV------AELLQYLETADYSIREE 423 (938)
T ss_pred HHHHHHHHHHHHHhchhh--HHHHH------HHHHHHHhhcchHHHHH
Confidence 799999999999998763 34554 33455554455444443
No 104
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.15 E-value=0.11 Score=47.24 Aligned_cols=184 Identities=21% Similarity=0.262 Sum_probs=121.4
Q ss_pred hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640 31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 109 (323)
Q Consensus 31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~ 109 (323)
..++.+++.+. .+..+|..|...+..+. . .-.++.+.++|. +.++.++..|+.+|..+-.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~-----------~-~~av~~l~~~l~------d~~~~vr~~a~~aLg~~~~- 103 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG-----------S-EEAVPLLRELLS------DEDPRVRDAAADALGELGD- 103 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc-----------h-HHHHHHHHHHhc------CCCHHHHHHHHHHHHccCC-
Confidence 46777888885 45777887777744433 1 446888999999 7788999999998776632
Q ss_pred cchhhhhhccCCcHHHHHHHHh-cCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHh-----------
Q 020640 110 DNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQS----------- 177 (323)
Q Consensus 110 ~~~~~~i~~~~g~i~~Lv~ll~-~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~----------- 177 (323)
...++.++.++. +++..++..++++|..+-.. ..+.+++..+.+....
T Consensus 104 ----------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~ 163 (335)
T COG1413 104 ----------PEAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALL 163 (335)
T ss_pred ----------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHH
Confidence 235788889888 58999999999999988432 2478888888876532
Q ss_pred -HHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhcc
Q 020640 178 -AMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRES 254 (323)
Q Consensus 178 -~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~ 254 (323)
++..+..+|..+ .....++.+..++.+. .++..+..+|..+.... ..+...+...+.+.
T Consensus 164 ~~r~~a~~~l~~~----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~ 225 (335)
T COG1413 164 DVRAAAAEALGEL----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDE 225 (335)
T ss_pred HHHHHHHHHHHHc----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCC
Confidence 233333333222 1223667778888766 57888888777777654 22345555555543
Q ss_pred CChhHHHHHHHHHHHhcc
Q 020640 255 TCDRNKENCIAILHTICL 272 (323)
Q Consensus 255 ~~~~~~~~a~~~L~~L~~ 272 (323)
+ ..++..++.+|..+-.
T Consensus 226 ~-~~vr~~~~~~l~~~~~ 242 (335)
T COG1413 226 S-LEVRKAALLALGEIGD 242 (335)
T ss_pred C-HHHHHHHHHHhcccCc
Confidence 3 5566666665555443
No 105
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.0039 Score=58.38 Aligned_cols=260 Identities=13% Similarity=0.076 Sum_probs=174.0
Q ss_pred HHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccc-hhhhhhccCCcHHH
Q 020640 47 QTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN-NKKLVAETPMVIPL 125 (323)
Q Consensus 47 ~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~g~i~~ 125 (323)
-..++..|..+++.-.-.|.-+.+ ..+.+.|+++|. .++..+..-++..+.|+-..-+ -+..+... |++..
T Consensus 406 ~~a~~l~LkS~SrSV~~LRTgL~d-~~I~elLi~~Ls------~Peimi~~~~t~~icn~vv~fsnL~~~fL~~-~iIdv 477 (743)
T COG5369 406 FVAIVLFLKSMSRSVTFLRTGLLD-YPIVELLIDALS------NPEIMIEFPDTIDICNKVVPFSNLGAGFLEK-SIIDV 477 (743)
T ss_pred HHHHHHHHHHhhHHHHHHHhhccc-cchHHHHHHHhc------CccceeeccchhhhhheeeeccchHHHHHHh-hHHHH
Confidence 345777788888766667778888 889999999999 4444555556777777765555 46777775 58999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCCc--hhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCc-h---hHHH
Q 020640 126 LMDALRSGTIETRSNAAAALFTLSALDSN--KEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHE-N---KARA 199 (323)
Q Consensus 126 Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~--~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~-~---~~~i 199 (323)
|+.++.+.+...+....|.++.+-.+.++ +-+....-+++.++.+..++.-.++..++..|+|++.+.. | +...
T Consensus 478 l~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~ 557 (743)
T COG5369 478 LVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVF 557 (743)
T ss_pred HHHHhhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeE
Confidence 99999988899999999999999765543 4455667789999999999999999999999999976432 1 1111
Q ss_pred HhhC----chHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHh--cCCHHHHHHHHhc---------cC-------
Q 020640 200 VRDG----GVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGD--LGGVSCMLRIIRE---------ST------- 255 (323)
Q Consensus 200 ~~~g----~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~--~g~i~~Lv~ll~~---------~~------- 255 (323)
+..- ....|++.+... -.....+.+|.+++.+++..+.++. +..+..+-.+|.. ++
T Consensus 558 ~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~ 637 (743)
T COG5369 558 IKATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLL 637 (743)
T ss_pred EecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccC
Confidence 1111 223445555443 2345567888888876655555443 3444444444321 00
Q ss_pred ------------------------------------ChhHHHHHHHHHHHhcccCh--------HhHHHHHhhcccHHHH
Q 020640 256 ------------------------------------CDRNKENCIAILHTICLSDR--------TKWKAMREEESTHGTI 291 (323)
Q Consensus 256 ------------------------------------~~~~~~~a~~~L~~L~~~~~--------~~~~~~~~~~~~i~~L 291 (323)
+++.-.+..|...++..... -.+..++...|+-+.|
T Consensus 638 p~s~~~v~l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l 717 (743)
T COG5369 638 PISYTIVNLSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWL 717 (743)
T ss_pred ccceeeecccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHH
Confidence 01111223333333332211 1344566677888888
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHh
Q 020640 292 SKLAQDGTARAKRKATGILERLK 314 (323)
Q Consensus 292 ~~ll~~~~~~~~~~A~~~L~~l~ 314 (323)
.++..++++.+++++-.+|.++.
T Consensus 718 ~k~q~~~Sl~vrek~~taL~~l~ 740 (743)
T COG5369 718 VKIQAKDSLIVREKIGTALENLR 740 (743)
T ss_pred HHHhccCcHHHHHHHHHHHHhhh
Confidence 88888889999999999998864
No 106
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=97.11 E-value=0.2 Score=50.59 Aligned_cols=242 Identities=15% Similarity=0.136 Sum_probs=157.6
Q ss_pred HHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHh----cCC----HHHH
Q 020640 67 LFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALR----SGT----IETR 138 (323)
Q Consensus 67 ~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~----~~~----~~~~ 138 (323)
.+.+ .||+..+++++..-.. .+....+....+.+|..+++...||+.+.+.+ .++.|+..+. .+. .++.
T Consensus 112 v~~~-~gGL~~ll~~l~~~~~-~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~-al~~LL~~L~~~l~~~~~~~~~~i~ 188 (802)
T PF13764_consen 112 VLAE-CGGLEVLLSRLDSIRD-FSRGRELLQVLLKLLRYCCKVKVNRRALLELN-ALNRLLSVLNRALQANQNSSQAEIA 188 (802)
T ss_pred Hhhc-CCCHHHHHHHHHhhcc-ccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcC-CHHHHHHHHHHHHhCccccccchHH
Confidence 3455 8999999999974321 03456788888999999999999999999965 5998888774 333 6777
Q ss_pred HHHHHHHHHhcCCCCc---hh--hhhcc--------CChHHHHHHhhhc----CHhHHHHHHHHHHHhccCCchhHHHHh
Q 020640 139 SNAAAALFTLSALDSN---KE--VIGKS--------GALKPLIDLLDEG----HQSAMKDVASAIFNLCITHENKARAVR 201 (323)
Q Consensus 139 ~~a~~~L~~L~~~~~~---~~--~i~~~--------g~i~~Lv~lL~~~----~~~~~~~al~aL~~L~~~~~~~~~i~~ 201 (323)
+....++..|...... .. ..... .-+..+++.+.++ ++.+....++.|-.|+.+++.+...+-
T Consensus 189 E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv 268 (802)
T PF13764_consen 189 EQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALV 268 (802)
T ss_pred HHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHH
Confidence 7777777776432211 00 00111 1255556655543 688999999999999999876665422
Q ss_pred hCchHHHHHHhhc-----C--chHHHHHHHHHHHhcC-------HHHHHHHHhcCCHHHHHHHHhcc-------CChhHH
Q 020640 202 DGGVSVILKKIMD-----G--VHVDELLAILAMLSTN-------HRAVEEIGDLGGVSCMLRIIRES-------TCDRNK 260 (323)
Q Consensus 202 ~g~v~~Lv~ll~~-----~--~~~~~a~~~L~~l~~~-------~~~~~~i~~~g~i~~Lv~ll~~~-------~~~~~~ 260 (323)
. ..-..++- . .--...+..++.++.. ...|+.+++.|+++..++++... +++.++
T Consensus 269 ~----~F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk 344 (802)
T PF13764_consen 269 E----HFKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWK 344 (802)
T ss_pred H----HHHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHH
Confidence 1 22222221 1 1112335555555542 47888999999999999888652 124444
Q ss_pred H--------HHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcC-CHHHHHHHHHHHHHHhcch
Q 020640 261 E--------NCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG-TARAKRKATGILERLKRTV 317 (323)
Q Consensus 261 ~--------~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~A~~~L~~l~~~~ 317 (323)
+ .++..|.-|+..++.. +.++ ..++++.+..+=+.. +..+...|-.+|..|+...
T Consensus 345 ~~l~~psLp~iL~lL~GLa~gh~~t-Q~~~-~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~ 408 (802)
T PF13764_consen 345 EFLSRPSLPYILRLLRGLARGHEPT-QLLI-AEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENE 408 (802)
T ss_pred HHhcCCcHHHHHHHHHHHHhcCHHH-HHHH-HhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence 4 4788888888887653 3443 456775555554433 6788888888888888754
No 107
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.10 E-value=0.048 Score=52.09 Aligned_cols=169 Identities=13% Similarity=0.116 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC
Q 020640 136 ETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG 215 (323)
Q Consensus 136 ~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~ 215 (323)
..+..++..+..++...+..-......++|.+.+.|.+..+++++.+..+|..++..-+|.. | + -.+|.|++.+.++
T Consensus 269 rtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I-~-~~ip~Lld~l~dp 345 (569)
T KOG1242|consen 269 RTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-I-Q-KIIPTLLDALADP 345 (569)
T ss_pred hhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-H-H-HHHHHHHHHhcCc
Confidence 56677888888887766666666668899999999999999999999999999988666655 2 2 2678888888877
Q ss_pred c-hHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhcc---CChhHHHHHHHHHHHhcccC--hHhHHHHHhhcccHH
Q 020640 216 V-HVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRES---TCDRNKENCIAILHTICLSD--RTKWKAMREEESTHG 289 (323)
Q Consensus 216 ~-~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~---~~~~~~~~a~~~L~~L~~~~--~~~~~~~~~~~~~i~ 289 (323)
. -...++..|..-..-. .++.-.+..++.+++.+ .+..+++.++.++.|+|.-- +.....++. ..++
T Consensus 346 ~~~~~e~~~~L~~ttFV~-----~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~--~Llp 418 (569)
T KOG1242|consen 346 SCYTPECLDSLGATTFVA-----EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP--SLLP 418 (569)
T ss_pred ccchHHHHHhhcceeeee-----eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH--HHhh
Confidence 4 4555555444332211 11223344444444432 23668899999999999865 333334432 4555
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHh
Q 020640 290 TISKLAQDGTARAKRKATGILERLK 314 (323)
Q Consensus 290 ~L~~ll~~~~~~~~~~A~~~L~~l~ 314 (323)
.|-+.+....|+++.-|.++|..+-
T Consensus 419 ~lk~~~~d~~PEvR~vaarAL~~l~ 443 (569)
T KOG1242|consen 419 GLKENLDDAVPEVRAVAARALGALL 443 (569)
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHH
Confidence 5555566567999999999985443
No 108
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.09 E-value=0.014 Score=46.62 Aligned_cols=121 Identities=15% Similarity=0.150 Sum_probs=91.7
Q ss_pred hHHHHhhCchHHHHHHhhcCc--------hHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccC-ChhHHHHHHHH
Q 020640 196 KARAVRDGGVSVILKKIMDGV--------HVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIREST-CDRNKENCIAI 266 (323)
Q Consensus 196 ~~~i~~~g~v~~Lv~ll~~~~--------~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~-~~~~~~~a~~~ 266 (323)
..++++.||+..|++++.++. ....++.++.+|..+...-=...+...|..++.++.... +..+.+.|..+
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 456788899999999998763 233456666666654322223444456888888887533 47789999999
Q ss_pred HHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 020640 267 LHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 317 (323)
Q Consensus 267 L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 317 (323)
|-++..+++.. ...+.+.=-++.|+..++.++++++.+|..++..|...+
T Consensus 84 LEs~Vl~S~~l-y~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA 133 (160)
T PF11841_consen 84 LESIVLNSPKL-YQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKA 133 (160)
T ss_pred HHHHHhCCHHH-HHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Confidence 99999998764 466667888999999999999999999999998887533
No 109
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.07 E-value=0.00076 Score=43.88 Aligned_cols=55 Identities=29% Similarity=0.106 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHh
Q 020640 135 IETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNL 189 (323)
Q Consensus 135 ~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L 189 (323)
+.++..++++|.+++........-....+++.|+.+|.++++.++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4678999999999876555444444467899999999999999999999999875
No 110
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.05 E-value=0.0032 Score=46.41 Aligned_cols=68 Identities=22% Similarity=0.255 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccc-hhhhhhc
Q 020640 46 DQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN-NKKLVAE 118 (323)
Q Consensus 46 ~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~ 118 (323)
.|...+..|.|++..++.++..+.+ .|+||.+++...-. +++|-+++.|..+++||+.... ++..+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~-~~Gi~liL~~c~iD----~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRE-LGGIPLILSCCNID----DHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHH-cCChHHHHHhcCCC----cccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4667889999999999999999999 99999999987643 7799999999999999987665 6665554
No 111
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.12 Score=50.21 Aligned_cols=254 Identities=11% Similarity=0.054 Sum_probs=152.7
Q ss_pred CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCC
Q 020640 42 ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPM 121 (323)
Q Consensus 42 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g 121 (323)
.++...+-|+.++.|+- +.++++.+.. -|+ ++|.++ +...-++.+|+-+|..|-... .-++..|+
T Consensus 123 rn~~fv~LAL~~I~niG--~re~~ea~~~---DI~---KlLvS~----~~~~~vkqkaALclL~L~r~s---pDl~~~~~ 187 (938)
T KOG1077|consen 123 RNPTFVCLALHCIANIG--SREMAEAFAD---DIP---KLLVSG----SSMDYVKQKAALCLLRLFRKS---PDLVNPGE 187 (938)
T ss_pred CCcHHHHHHHHHHHhhc--cHhHHHHhhh---hhH---HHHhCC----cchHHHHHHHHHHHHHHHhcC---ccccChhh
Confidence 45666777888888887 3556766665 244 556644 334456666555555554332 22334467
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhh-------------cCHhHHHHHHHHHHH
Q 020640 122 VIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE-------------GHQSAMKDVASAIFN 188 (323)
Q Consensus 122 ~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~-------------~~~~~~~~al~aL~~ 188 (323)
+...++.+|.+.+..+...+...+-.|+...+....-.-.-++..|..+... +.+=.....+++|.+
T Consensus 188 W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~ 267 (938)
T KOG1077|consen 188 WAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQI 267 (938)
T ss_pred HHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHh
Confidence 8889999999888888888888888887543321111111123333333221 245577788888887
Q ss_pred hccCC--chhHHHHhhCchHHHHHHhhcC----chH-----HHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhccCC
Q 020640 189 LCITH--ENKARAVRDGGVSVILKKIMDG----VHV-----DELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTC 256 (323)
Q Consensus 189 L~~~~--~~~~~i~~~g~v~~Lv~ll~~~----~~~-----~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~ 256 (323)
+-... ..+.++.+ +++.++...++. .++ ...+--.-+++.. +.-.+.+.+ .+..|.+++.+..
T Consensus 268 ~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~rE- 342 (938)
T KOG1077|consen 268 YPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHRE- 342 (938)
T ss_pred CCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhccc-
Confidence 73322 34444443 344444444422 221 1112222233432 222233332 3788889998654
Q ss_pred hhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhh-cCCHHHHHHHHHHHHHHhcchhh
Q 020640 257 DRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQ-DGTARAKRKATGILERLKRTVNL 319 (323)
Q Consensus 257 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~A~~~L~~l~~~~~~ 319 (323)
..++.-|..-++.|+...+. -..++.+ .+.++..++ ..+..++++|..+|..+|+-...
T Consensus 343 ~NiRYLaLEsm~~L~ss~~s--~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~Na 402 (938)
T KOG1077|consen 343 TNIRYLALESMCKLASSEFS--IDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNA 402 (938)
T ss_pred ccchhhhHHHHHHHHhccch--HHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchhhH
Confidence 77899999999999988754 2454443 777788887 55999999999999999976543
No 112
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.02 E-value=0.016 Score=56.72 Aligned_cols=200 Identities=11% Similarity=0.028 Sum_probs=144.6
Q ss_pred cccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHH-HhcCCCCchhhhhccCChHHHHHHhhhcC-HhHHHHHHHH
Q 020640 108 IHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALF-TLSALDSNKEVIGKSGALKPLIDLLDEGH-QSAMKDVASA 185 (323)
Q Consensus 108 ~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~-~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~al~a 185 (323)
.....+...++.+ ..+.|.++.....+..+.....+|. .+.... .+ ....++++...++.+. ..-...++.+
T Consensus 492 ~~K~~~~~~Ik~~-~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~-~~----~~~v~~~~~s~~~~d~~~~en~E~L~a 565 (748)
T KOG4151|consen 492 KEKYERAKKIKPG-GYEALLRLGQQQFEEAKLKWYHALAGKIDFPG-ER----SYEVVKPLDSALHNDEKGLENFEALEA 565 (748)
T ss_pred hhHHhcCcccccc-HHHHHHHHHHHhchHHHHHHHHHHhhhcCCCC-Cc----hhhhhhhhcchhhhhHHHHHHHHHHHH
Confidence 3444566677755 5999999998888888888888887 232211 11 1346777777777643 3345678999
Q ss_pred HHHhccCC-chhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHH-Hh-cCCHHHHHHHHhccCChhHH
Q 020640 186 IFNLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEI-GD-LGGVSCMLRIIRESTCDRNK 260 (323)
Q Consensus 186 L~~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i-~~-~g~i~~Lv~ll~~~~~~~~~ 260 (323)
+.||+..+ ..|.++++.-+++.+-.++.+. ..+..++..+.||..++..-... ++ ...++.....+.... .+..
T Consensus 566 ltnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~-E~~~ 644 (748)
T KOG4151|consen 566 LTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVAD-EKFE 644 (748)
T ss_pred hhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhh-hHHh
Confidence 99998866 5677888876666655555554 56888999999999998665554 44 346777777776543 7788
Q ss_pred HHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 020640 261 ENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK 314 (323)
Q Consensus 261 ~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~ 314 (323)
.++++++..++...++++..+..-..+...++.++.++++++|........++.
T Consensus 645 lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~ 698 (748)
T KOG4151|consen 645 LAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLF 698 (748)
T ss_pred hhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHH
Confidence 899999998877776655546556678899999999999999999888777744
No 113
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=97.01 E-value=0.075 Score=48.96 Aligned_cols=275 Identities=16% Similarity=0.155 Sum_probs=152.8
Q ss_pred hHHHHHHHHhc--CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc
Q 020640 31 DHFLSLLKKMS--ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 108 (323)
Q Consensus 31 ~~i~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~ 108 (323)
+-+..+++-+. .+..+|+.++..|..-+. ++.+|..|.. .|.+..+++.+... .+++..--.++.+++-++.
T Consensus 21 Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra-~g~~~~l~~~l~~~----~~d~~~~l~~a~i~~~l~~ 94 (361)
T PF07814_consen 21 DEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRA-HGLVKRLFKALSDA----PDDDILALATAAILYVLSR 94 (361)
T ss_pred HHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHH-cCcHHHHHHHhccc----cchHHHHHHHHHHHHHHcc
Confidence 56777888885 346689999999999995 7899999999 99999999999632 2333444444455555655
Q ss_pred ccchhhhhhccCCcHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhh---------hcCHhH
Q 020640 109 HDNNKKLVAETPMVIPLLMDALRSG-TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLD---------EGHQSA 178 (323)
Q Consensus 109 ~~~~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~---------~~~~~~ 178 (323)
+..+...+.. .+....++.+++.. ..+.....- .....+..+.. ...+...-+.+. ......
T Consensus 95 d~~~~~l~~~-~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk~~-~~~~~~~~~~~~~~~~~~~~~~~~lsp 166 (361)
T PF07814_consen 95 DGLNMHLLLD-RDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSKVQ-QKSRSLCKELLSSGSSWKSPKPPELSP 166 (361)
T ss_pred CCcchhhhhc-hhHHHHHHHHhccccccccccchh------hhhhhhhhHHH-HHHHHHHHHHHhccccccccCCccccc
Confidence 5444444333 45677778888711 000000000 00000111111 111111111221 012234
Q ss_pred HHHHHHHHHHhcc---------------CCchhHHHHhhCchHHHHHHhhc----C--------------chHHHHHHHH
Q 020640 179 MKDVASAIFNLCI---------------THENKARAVRDGGVSVILKKIMD----G--------------VHVDELLAIL 225 (323)
Q Consensus 179 ~~~al~aL~~L~~---------------~~~~~~~i~~~g~v~~Lv~ll~~----~--------------~~~~~a~~~L 225 (323)
+..|+.+|-.++. .+--+.++.+.|++..++..+.+ . ...+.++.+|
T Consensus 167 ~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~IL 246 (361)
T PF07814_consen 167 QTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSIL 246 (361)
T ss_pred ccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHH
Confidence 4455555555530 01135556677899999998862 1 1246789999
Q ss_pred HHHhcC-HHHHHHHHhc--CCHHHHH-HHHhccC--ChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhc--
Q 020640 226 AMLSTN-HRAVEEIGDL--GGVSCML-RIIREST--CDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD-- 297 (323)
Q Consensus 226 ~~l~~~-~~~~~~i~~~--g~i~~Lv-~ll~~~~--~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~-- 297 (323)
.+.+.. ++++..+... +.+..+. .++.... .......+++++.|++.+++..+..+- ..+....+..+...
T Consensus 247 Es~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~-s~~l~~~~~~i~~~~~ 325 (361)
T PF07814_consen 247 ESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFA-SPKLGQQLGLIVTSFF 325 (361)
T ss_pred HHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhh-hhHhccchHHHHHhhc
Confidence 999884 6777777654 3333333 3333221 133467899999999999976544432 23333333222111
Q ss_pred ------------CCHHHHHHHHHHHHHHhcchhhc
Q 020640 298 ------------GTARAKRKATGILERLKRTVNLT 320 (323)
Q Consensus 298 ------------~~~~~~~~A~~~L~~l~~~~~~~ 320 (323)
..-+..--+.++|-||+++.+.+
T Consensus 326 ~~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~s~~n 360 (361)
T PF07814_consen 326 CVLSLPNYVPEESSFDILILALGLLINLVEHSEAN 360 (361)
T ss_pred ccccccccccccccchHHHHHHHhHHHheeeCccC
Confidence 12334455777888888776544
No 114
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.93 E-value=0.0066 Score=50.43 Aligned_cols=112 Identities=18% Similarity=0.200 Sum_probs=84.4
Q ss_pred CCHHHHHHHHHHHHHhccccchhhhhhccC---------------CcHHHHHHHHhc------CCHHHHHHHHHHHHHhc
Q 020640 91 INPNLQEDVITTLLNLSIHDNNKKLVAETP---------------MVIPLLMDALRS------GTIETRSNAAAALFTLS 149 (323)
Q Consensus 91 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~---------------g~i~~Lv~ll~~------~~~~~~~~a~~~L~~L~ 149 (323)
+.......++.+|.|++..++....+.... ..+..|+..+.. ...+-....+.++.|++
T Consensus 7 ~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS 86 (192)
T PF04063_consen 7 PKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS 86 (192)
T ss_pred CCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence 345567788899999998877666444322 245566666644 23566678999999999
Q ss_pred CCCCchhhhhc--cCC--hHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhh
Q 020640 150 ALDSNKEVIGK--SGA--LKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRD 202 (323)
Q Consensus 150 ~~~~~~~~i~~--~g~--i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~ 202 (323)
..++.|..+.+ .+. +..|+.+....+..-+.-++++|.|+|.+.+....++..
T Consensus 87 ~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~ 143 (192)
T PF04063_consen 87 QLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSD 143 (192)
T ss_pred CCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCc
Confidence 99999999987 344 677777777777777888999999999999888777764
No 115
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.93 E-value=0.21 Score=42.62 Aligned_cols=207 Identities=13% Similarity=0.136 Sum_probs=134.6
Q ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHH-hhccccc-----CCCCCHHHHHHHHHHHH
Q 020640 31 DHFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLS-PLSESKC-----ENGINPNLQEDVITTLL 104 (323)
Q Consensus 31 ~~i~~Lv~~l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~-lL~~~~~-----~~~~~~~~~~~a~~~L~ 104 (323)
+-+..++-.+.+ +..++.|+..|..--...++..-.+-...|.+..|++ .+.-+.. .......=.-+++..|.
T Consensus 26 dk~~~~i~~l~~-~p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQ 104 (293)
T KOG3036|consen 26 DKAYQLILSLVS-PPTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQ 104 (293)
T ss_pred cchhhHHHHhhC-CchHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHH
Confidence 345555555543 4677888888888776556555554442554444432 2211100 00112233445777788
Q ss_pred HhccccchhhhhhccCCcHHH-HHHHHh-----cCCHHHHHHHHHHHHHhcCCCCc--hhhhhccCChHHHHHHhhhcCH
Q 020640 105 NLSIHDNNKKLVAETPMVIPL-LMDALR-----SGTIETRSNAAAALFTLSALDSN--KEVIGKSGALKPLIDLLDEGHQ 176 (323)
Q Consensus 105 ~ls~~~~~~~~i~~~~g~i~~-Lv~ll~-----~~~~~~~~~a~~~L~~L~~~~~~--~~~i~~~g~i~~Lv~lL~~~~~ 176 (323)
-++.+++.|..+.... +|. +-.+|. .+.+..+-.+.+++..|...++. ...+...+++|..++.+..+++
T Consensus 105 cvASHpdTr~~FL~A~--iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSe 182 (293)
T KOG3036|consen 105 CVASHPDTRRAFLRAH--IPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSE 182 (293)
T ss_pred HHhcCcchHHHHHHcc--ChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccH
Confidence 8999999999999864 554 333442 23577888999999999876543 4555678999999999999999
Q ss_pred hHHHHHHHHHHHhccCCchhHHHHh----hC----chHHHHHHhhc-C--chHHHHHHHHHHHhcCHHHHHHHHh
Q 020640 177 SAMKDVASAIFNLCITHENKARAVR----DG----GVSVILKKIMD-G--VHVDELLAILAMLSTNHRAVEEIGD 240 (323)
Q Consensus 177 ~~~~~al~aL~~L~~~~~~~~~i~~----~g----~v~~Lv~ll~~-~--~~~~~a~~~L~~l~~~~~~~~~i~~ 240 (323)
..+..|...+..+-.++.+-..+.+ .- .+..++.-+.+ + .+.+..+++..+|+.++..|..+..
T Consensus 183 lSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~ 257 (293)
T KOG3036|consen 183 LSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRS 257 (293)
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 9999999998888777765433321 12 22233333332 2 5678899999999999988887754
No 116
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=0.025 Score=54.39 Aligned_cols=243 Identities=14% Similarity=0.158 Sum_probs=139.2
Q ss_pred HHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcccc----
Q 020640 36 LLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD---- 110 (323)
Q Consensus 36 Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~---- 110 (323)
|..... .|..++..|+..|..+.....- - .-+....++.++ +++..++..|+.+++-++..-
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL-~------~~~Y~~A~~~ls------D~~e~VR~aAvqlv~v~gn~~p~~~ 269 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKL-S------KACYSRAVKHLS------DDYEDVRKAAVQLVSVWGNRCPAPL 269 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccccc-c------HHHHHHHHHHhc------chHHHHHHHHHHHHHHHHhcCCCcc
Confidence 444443 4455666677766666642221 1 123455778888 778999999988776554321
Q ss_pred --c-hhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHH-
Q 020640 111 --N-NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAI- 186 (323)
Q Consensus 111 --~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL- 186 (323)
+ +...+... +...+...+++.+-.++..|+++|..+....+ .+.....=+.+..-++. .......-..+
T Consensus 270 e~e~~e~kl~D~--aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe---e~i~QTLdKKlms~lRR--kr~ahkrpk~l~ 342 (823)
T KOG2259|consen 270 ERESEEEKLKDA--AFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE---EIIQQTLDKKLMSRLRR--KRTAHKRPKALY 342 (823)
T ss_pred cchhhhhhhHHH--HHHHHHHHHhcCceeeeehHHHHhchHHHhHH---HHHHHHHHHHHhhhhhh--hhhcccchHHHH
Confidence 1 23333332 46667777778888888888888877744221 11111011111111111 11111111111
Q ss_pred HHh--cc------------CCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHH
Q 020640 187 FNL--CI------------THENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLR 249 (323)
Q Consensus 187 ~~L--~~------------~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ 249 (323)
.+- +. .++....++..|+-..++.-|.+. ++++.|+..++.|+.+ |.-... .+..|++
T Consensus 343 s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvD 417 (823)
T KOG2259|consen 343 SSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVD 417 (823)
T ss_pred hcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHH
Confidence 111 00 122344567778778888888777 8999999999999985 433222 3678999
Q ss_pred HHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHH
Q 020640 250 IIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILE 311 (323)
Q Consensus 250 ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~ 311 (323)
++.+.- +.++..|..+|..++.+- .+ ....++...+-+.+.++++++..-.+|.
T Consensus 418 MfNDE~-~~VRL~ai~aL~~Is~~l-----~i--~eeql~~il~~L~D~s~dvRe~l~elL~ 471 (823)
T KOG2259|consen 418 MFNDEI-EVVRLKAIFALTMISVHL-----AI--REEQLRQILESLEDRSVDVREALRELLK 471 (823)
T ss_pred HhccHH-HHHHHHHHHHHHHHHHHh-----ee--cHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999654 889999999999988762 11 2334455555555555555555444443
No 117
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.90 E-value=0.086 Score=45.52 Aligned_cols=219 Identities=14% Similarity=0.074 Sum_probs=140.5
Q ss_pred CHHHHHHHHHHHHHhc-cccchhhhhhccCCcHHHHHHHH-------hcC--CH---HHHHHHHHHHHHhcCCCCchhhh
Q 020640 92 NPNLQEDVITTLLNLS-IHDNNKKLVAETPMVIPLLMDAL-------RSG--TI---ETRSNAAAALFTLSALDSNKEVI 158 (323)
Q Consensus 92 ~~~~~~~a~~~L~~ls-~~~~~~~~i~~~~g~i~~Lv~ll-------~~~--~~---~~~~~a~~~L~~L~~~~~~~~~i 158 (323)
+++.++.|+.-|..-- ..++-...+..+.|.+..|+.=+ ..+ +. .-...+...+..++.+++.+..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 4677887776665432 22333445556667666554322 111 12 23345666677788999999999
Q ss_pred hccCChHHHHHHhhhc-----CHhHHHHHHHHHHHhccCCc--hhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHh
Q 020640 159 GKSGALKPLIDLLDEG-----HQSAMKDVASAIFNLCITHE--NKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLS 229 (323)
Q Consensus 159 ~~~g~i~~Lv~lL~~~-----~~~~~~~al~aL~~L~~~~~--~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~ 229 (323)
.+.++.-.|..+|+.. -+.++..+++.++.|...++ ...-+.+.+.+|..++.|..| -.+..|.-++..+-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9999888888888753 34578899999999988653 344456779999999999987 34667888888888
Q ss_pred cCHHHHHHHHhc--------CCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHH-----Hhh
Q 020640 230 TNHRAVEEIGDL--------GGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISK-----LAQ 296 (323)
Q Consensus 230 ~~~~~~~~i~~~--------g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~-----ll~ 296 (323)
.++.+-..+.+. .++..++.-+....++++-.+.+++...|+.+... ++.+. .++|..+. -+.
T Consensus 168 ~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpra--r~aL~--~~LP~~Lrd~~f~~~l 243 (262)
T PF04078_consen 168 LDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRA--REALR--QCLPDQLRDGTFSNIL 243 (262)
T ss_dssp HSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTH--HHHHH--HHS-GGGTSSTTTTGG
T ss_pred cchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHH--HHHHH--HhCcHHHhcHHHHHHH
Confidence 877666666543 14555555444455699999999999999998743 34443 23332211 123
Q ss_pred cCCHHHHHHHHHHHHHHh
Q 020640 297 DGTARAKRKATGILERLK 314 (323)
Q Consensus 297 ~~~~~~~~~A~~~L~~l~ 314 (323)
.+++.+++.=..++.|+.
T Consensus 244 ~~D~~~k~~l~qLl~nl~ 261 (262)
T PF04078_consen 244 KDDPSTKRWLQQLLSNLN 261 (262)
T ss_dssp CS-HHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHHHhc
Confidence 347778887777777664
No 118
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.75 E-value=0.065 Score=51.38 Aligned_cols=147 Identities=14% Similarity=0.101 Sum_probs=100.4
Q ss_pred hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhh---HHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640 31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSF---RALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 106 (323)
Q Consensus 31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~---~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l 106 (323)
..+...+..|+ ..+.+|.+|+.....++.- -.+ -+.+.. .|.| |.+-|. .+++++.-..+.+++.+
T Consensus 604 ~ivStiL~~L~~k~p~vR~~aadl~~sl~~v-lk~c~e~~~l~k-lg~i--LyE~lg------e~ypEvLgsil~Ai~~I 673 (975)
T COG5181 604 MIVSTILKLLRSKPPDVRIRAADLMGSLAKV-LKACGETKELAK-LGNI--LYENLG------EDYPEVLGSILKAICSI 673 (975)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHH-HHhcchHHHHHH-HhHH--HHHhcC------cccHHHHHHHHHHHHHH
Confidence 46677777785 5688999998887777642 111 122223 3322 333333 67889888888887766
Q ss_pred ccccch---hhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhc-cCChHHHHHHhhhcCHhHHHHH
Q 020640 107 SIHDNN---KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK-SGALKPLIDLLDEGHQSAMKDV 182 (323)
Q Consensus 107 s~~~~~---~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a 182 (323)
-....- +..+ .|++|.|.-+|++.+..+....+..+..++...+...-..+ -.+--.|+++|++-+.+++.+|
T Consensus 674 ~sv~~~~~mqpPi---~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A 750 (975)
T COG5181 674 YSVHRFRSMQPPI---SGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNA 750 (975)
T ss_pred hhhhcccccCCch---hhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhh
Confidence 433332 2233 35899999999999999999999999999876554333233 2345678888999999999999
Q ss_pred HHHHHHhc
Q 020640 183 ASAIFNLC 190 (323)
Q Consensus 183 l~aL~~L~ 190 (323)
..++..++
T Consensus 751 ~~tfG~Is 758 (975)
T COG5181 751 TETFGCIS 758 (975)
T ss_pred hhhhhhHH
Confidence 99888765
No 119
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=96.72 E-value=0.11 Score=49.49 Aligned_cols=248 Identities=11% Similarity=0.017 Sum_probs=152.9
Q ss_pred chhHHHHHHHHHHHhccChhhHHHHhhhcC----CHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc-ccchhhhhhc
Q 020640 44 LPDQTEAAKELRLLTKRMPSFRALFGESHD----AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI-HDNNKKLVAE 118 (323)
Q Consensus 44 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g----~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~ 118 (323)
..+|..|+.+|.+-+.. .+..|.. .+ .+...++.-+ +++.+++..|...|..+-. .-.....+.+
T Consensus 192 ~avRLaaL~aL~dsl~f---v~~nf~~-E~erNy~mqvvceatq------~~d~e~q~aafgCl~kim~LyY~fm~~ymE 261 (858)
T COG5215 192 SAVRLAALKALMDSLMF---VQGNFCY-EEERNYFMQVVCEATQ------GNDEELQHAAFGCLNKIMMLYYKFMQSYME 261 (858)
T ss_pred HHHHHHHHHHHHHHHHH---HHHhhcc-hhhhchhheeeehhcc------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888873322 1222222 22 3334445445 7899999999998876532 2223344555
Q ss_pred cCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCc-hhhh----------------hccCChHHHHHHhhh-------c
Q 020640 119 TPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN-KEVI----------------GKSGALKPLIDLLDE-------G 174 (323)
Q Consensus 119 ~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~-~~~i----------------~~~g~i~~Lv~lL~~-------~ 174 (323)
+. ......+.+++.+.++...+...-..++..+.. ...+ .-..++|.|+++|.. +
T Consensus 262 ~a-L~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~D 340 (858)
T COG5215 262 NA-LAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGD 340 (858)
T ss_pred HH-HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 43 445556677899999988888776666532210 0000 013478999999975 2
Q ss_pred CHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHh----hcC--chHHHHHHHHHHHhcC--HHHHHHHHhcCCHHH
Q 020640 175 HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKI----MDG--VHVDELLAILAMLSTN--HRAVEEIGDLGGVSC 246 (323)
Q Consensus 175 ~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll----~~~--~~~~~a~~~L~~l~~~--~~~~~~i~~~g~i~~ 246 (323)
+..+...|..+|.-.+....+ . .+.++..+. +++ .-++.++.++..+... ++.+..++. .++|.
T Consensus 341 dWn~smaA~sCLqlfaq~~gd--~-----i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~-qalp~ 412 (858)
T COG5215 341 DWNPSMAASSCLQLFAQLKGD--K-----IMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVP-QALPG 412 (858)
T ss_pred ccchhhhHHHHHHHHHHHhhh--H-----hHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHH-hhhHH
Confidence 445677777777665433221 1 222333333 333 5688899999888885 466666654 56888
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhc---CCHHHHHHHHHHHHHHhc
Q 020640 247 MLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD---GTARAKRKATGILERLKR 315 (323)
Q Consensus 247 Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~---~~~~~~~~A~~~L~~l~~ 315 (323)
+..++.++ +-.+++.++|++..++.+-+ .++...+-+...+.-+.- +.+.+..+..|...||.+
T Consensus 413 i~n~m~D~-~l~vk~ttAwc~g~iad~va----~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~ 479 (858)
T COG5215 413 IENEMSDS-CLWVKSTTAWCFGAIADHVA----MIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVD 479 (858)
T ss_pred HHHhcccc-eeehhhHHHHHHHHHHHHHH----HhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHH
Confidence 88888854 48899999999999988654 333322333333332222 378888899999999886
No 120
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.69 E-value=0.081 Score=45.07 Aligned_cols=150 Identities=17% Similarity=0.109 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccc-hhhhhhccCCcHHH
Q 020640 47 QTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN-NKKLVAETPMVIPL 125 (323)
Q Consensus 47 ~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~g~i~~ 125 (323)
..+|+..|.-++. .++.|..|.+ +..--.|-.+|.+... +..++.++-.++.++..|.+.++ ....+.-..+++|.
T Consensus 96 VcnaL~LlQcvAS-HpdTr~~FL~-A~iPlylYpfL~Tt~~-~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl 172 (293)
T KOG3036|consen 96 VCNALALLQCVAS-HPDTRRAFLR-AHIPLYLYPFLNTTSK-SRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL 172 (293)
T ss_pred HHHHHHHHHHHhc-CcchHHHHHH-ccChhhhHHhhhcccc-CCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence 4678888888885 5889999999 8766667788865421 14567899999999999988776 33333333469999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhc--------cCChHHHHH-HhhhcCHhHHHHHHHHHHHhccCCchh
Q 020640 126 LMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK--------SGALKPLID-LLDEGHQSAMKDVASAIFNLCITHENK 196 (323)
Q Consensus 126 Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~--------~g~i~~Lv~-lL~~~~~~~~~~al~aL~~L~~~~~~~ 196 (323)
.++.+..+++..+.-|..++..+-.++..-..+.+ ...+..++. +.+.+++...++++++..+|+.+...|
T Consensus 173 CLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar 252 (293)
T KOG3036|consen 173 CLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRAR 252 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999999999877765444322 112233332 334578999999999999999877655
Q ss_pred HHH
Q 020640 197 ARA 199 (323)
Q Consensus 197 ~~i 199 (323)
..+
T Consensus 253 ~aL 255 (293)
T KOG3036|consen 253 AAL 255 (293)
T ss_pred HHH
Confidence 544
No 121
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.62 E-value=0.3 Score=43.94 Aligned_cols=188 Identities=16% Similarity=0.165 Sum_probs=115.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhc--cCChHHHHHHhhhcCHhHHHHHHHHHHHhccC---CchhHHH
Q 020640 125 LLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK--SGALKPLIDLLDEGHQSAMKDVASAIFNLCIT---HENKARA 199 (323)
Q Consensus 125 ~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~---~~~~~~i 199 (323)
..+..+...+...++.++..+.++....-....+.. ...+..+.+.++.+..+-+..|+.++.-++.. .+....+
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 345555666788899999888888644332223322 44677788888887766677788877777665 2455566
Q ss_pred HhhCchHHHHHHhhcC----chHHHHHHHHHHHhcC----HHHHHHHHhcCCHHHH--HHHHhccC---------ChhHH
Q 020640 200 VRDGGVSVILKKIMDG----VHVDELLAILAMLSTN----HRAVEEIGDLGGVSCM--LRIIREST---------CDRNK 260 (323)
Q Consensus 200 ~~~g~v~~Lv~ll~~~----~~~~~a~~~L~~l~~~----~~~~~~i~~~g~i~~L--v~ll~~~~---------~~~~~ 260 (323)
.+. ..|.|...+.++ ..+..|+.+|+-++.. ++......+ .+..+ ....+.+. ++.+.
T Consensus 127 ~~~-~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l~ 203 (309)
T PF05004_consen 127 FEE-LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAALV 203 (309)
T ss_pred HHH-HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence 654 778899988876 2445666666665551 222221111 12211 11222211 13466
Q ss_pred HHHHHHHHHhcccChH-hHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 020640 261 ENCIAILHTICLSDRT-KWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 317 (323)
Q Consensus 261 ~~a~~~L~~L~~~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 317 (323)
.+|+.+-.-|...-+. .....+ ...++.|..++.+++..++-.|-..|..|.+..
T Consensus 204 ~aAL~aW~lLlt~~~~~~~~~~~--~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 204 AAALSAWALLLTTLPDSKLEDLL--EEALPALSELLDSDDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 6666555555443332 234443 357999999999999999999999999887543
No 122
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.61 E-value=0.086 Score=52.88 Aligned_cols=263 Identities=14% Similarity=0.136 Sum_probs=144.3
Q ss_pred HHHHHh-cCCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchh
Q 020640 35 SLLKKM-SATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNK 113 (323)
Q Consensus 35 ~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~ 113 (323)
.|++.+ ++|.+.|..|..-|++--.++ ...-..-.....+..++++|. +.+.++|..|++.+.-++..
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~------D~ngEVQnlAVKClg~lvsK---- 77 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLE------DKNGEVQNLAVKCLGPLVSK---- 77 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHh------ccCcHHHHHHHHHHHHHHhh----
Confidence 566666 477889999988887766432 111111111457888999999 77899999999999987621
Q ss_pred hhhhccCCcHHHHHHHH----hcCCHHHHH-HHHHHHHHhcCCCCchhhhhccCChHHHHHHhhh------cCHhHHHHH
Q 020640 114 KLVAETPMVIPLLMDAL----RSGTIETRS-NAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE------GHQSAMKDV 182 (323)
Q Consensus 114 ~~i~~~~g~i~~Lv~ll----~~~~~~~~~-~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~------~~~~~~~~a 182 (323)
+-+. -++.+++-| -++.+..+. .+++.....+.-++.........+.+.+...+.. +...++-.+
T Consensus 78 --vke~--~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~ 153 (1233)
T KOG1824|consen 78 --VKED--QLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEV 153 (1233)
T ss_pred --chHH--HHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHH
Confidence 1111 122222222 122222222 2222222233223222223333444555544443 233366666
Q ss_pred HHHHHHhccCC-chhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhccCChh
Q 020640 183 ASAIFNLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDR 258 (323)
Q Consensus 183 l~aL~~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~ 258 (323)
+..|.-+-... +--.. .+.+....++.-+.+. .++++++.+|..++.. +.. .+. +++..|++=|.......
T Consensus 154 lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~--ly~--~li~~Ll~~L~~~~q~~ 228 (1233)
T KOG1824|consen 154 LDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD--LYV--ELIEHLLKGLSNRTQMS 228 (1233)
T ss_pred HHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH--HHH--HHHHHHHhccCCCCchH
Confidence 66665442211 11111 2223334444444444 6799999999999983 211 111 23455555554333344
Q ss_pred HHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHh---hcCCHHHHHHHHHHHHHHhcchhh
Q 020640 259 NKENCIAILHTICLSDRTKWKAMREEESTHGTISKLA---QDGTARAKRKATGILERLKRTVNL 319 (323)
Q Consensus 259 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll---~~~~~~~~~~A~~~L~~l~~~~~~ 319 (323)
..+--..+|..++.........= -...++.+.+.+ ..++++.+++...++..+-...|.
T Consensus 229 ~~rt~Iq~l~~i~r~ag~r~~~h--~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ 290 (1233)
T KOG1824|consen 229 ATRTYIQCLAAICRQAGHRFGSH--LDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPK 290 (1233)
T ss_pred HHHHHHHHHHHHHHHhcchhhcc--cchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChh
Confidence 55556667777766553211121 356788888888 777999999999999888765543
No 123
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.52 E-value=0.15 Score=51.70 Aligned_cols=218 Identities=12% Similarity=0.076 Sum_probs=145.7
Q ss_pred HHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHH-hcCCCCchhhhhccCChHHHHHHhhh-
Q 020640 96 QEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFT-LSALDSNKEVIGKSGALKPLIDLLDE- 173 (323)
Q Consensus 96 ~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~-L~~~~~~~~~i~~~g~i~~Lv~lL~~- 173 (323)
+..|+..|..+-.--.-..-+.-.-|+.|.++++|++...+.+-.-+-+=.. |+.+++++..+++.++-...+..|..
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~ 566 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPS 566 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCc
Confidence 4445555544432222222222234689999999999988877755444444 46777888889887777777777766
Q ss_pred c--CHhHHHHHHHHHHHhccCCc-hhHHHHhhCchHHHHHHhhcC---chHHHHHHHHHHHhcC-HHHHHHHHhcCCHHH
Q 020640 174 G--HQSAMKDVASAIFNLCITHE-NKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTN-HRAVEEIGDLGGVSC 246 (323)
Q Consensus 174 ~--~~~~~~~al~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~ 246 (323)
+ +++-+..|+=.|..++.+.. ......+.+.+....+.|.++ -++.-++-+|..|=.+ +..|=.=++.++...
T Consensus 567 ~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahek 646 (1387)
T KOG1517|consen 567 QAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEK 646 (1387)
T ss_pred CCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHH
Confidence 3 45677778888888888764 555667778899999999885 2456666666666664 344333356678999
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhcccC----hHh---HHH--------HHhhcccH---HHHHHHhhcCCHHHHHHHHH
Q 020640 247 MLRIIRESTCDRNKENCIAILHTICLSD----RTK---WKA--------MREEESTH---GTISKLAQDGTARAKRKATG 308 (323)
Q Consensus 247 Lv~ll~~~~~~~~~~~a~~~L~~L~~~~----~~~---~~~--------~~~~~~~i---~~L~~ll~~~~~~~~~~A~~ 308 (323)
|..++.+.. ++++-+|+.+|..+-... ++. +.+ ...+.... -.|+.+++.+++.++..-..
T Consensus 647 L~~~LsD~v-pEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v 725 (1387)
T KOG1517|consen 647 LILLLSDPV-PEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVV 725 (1387)
T ss_pred HHHHhcCcc-HHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHH
Confidence 999999765 999999999999987752 111 111 11122222 37777888899999888776
Q ss_pred HHHHHh
Q 020640 309 ILERLK 314 (323)
Q Consensus 309 ~L~~l~ 314 (323)
.|.-+.
T Consensus 726 ~ls~~~ 731 (1387)
T KOG1517|consen 726 ALSHFV 731 (1387)
T ss_pred HHHHHH
Confidence 666544
No 124
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.49 E-value=0.032 Score=40.96 Aligned_cols=93 Identities=15% Similarity=0.077 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhh
Q 020640 218 VDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQ 296 (323)
Q Consensus 218 ~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~ 296 (323)
+.-++..|+.++.. +..-.... .-+++.++..+.+.+ .+++..|+.+|.+++....+..-.. -..+...|.+++.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~d-~rVRy~AcEaL~ni~k~~~~~~l~~--f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQD-SRVRYYACEALYNISKVARGEILPY--FNEIFDALCKLSA 78 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHc
Confidence 44566667766653 22211111 245788888888665 9999999999999998765432222 3578899999999
Q ss_pred cCCHHHHHHHHHHHHHHh
Q 020640 297 DGTARAKRKATGILERLK 314 (323)
Q Consensus 297 ~~~~~~~~~A~~~L~~l~ 314 (323)
+.++.++..|..+-+.|+
T Consensus 79 D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 79 DPDENVRSAAELLDRLLK 96 (97)
T ss_pred CCchhHHHHHHHHHHHhc
Confidence 999999888866655553
No 125
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=96.47 E-value=0.051 Score=44.89 Aligned_cols=117 Identities=22% Similarity=0.225 Sum_probs=83.2
Q ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHHhccCh-hhHHHHhhhcCCHHHHHHhhccccc---CCCCCHHHHHHHHHHHHHh
Q 020640 31 DHFLSLLKKMSATLPDQTEAAKELRLLTKRMP-SFRALFGESHDAIPQLLSPLSESKC---ENGINPNLQEDVITTLLNL 106 (323)
Q Consensus 31 ~~i~~Lv~~l~~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~---~~~~~~~~~~~a~~~L~~l 106 (323)
.....+++.+.+..... ..+..|...-+.++ .....|.+ .||+..|+++|..... ...++...+..++.++..+
T Consensus 66 ~~p~~~i~~L~~~~~~~-~~L~~L~v~Lrt~~~~Wv~~Fl~-~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTS-KILKSLRVSLRTNPISWVQEFLE-LGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHHTTT--HH-HHHHHHHHHHHHS-HHHHHHH-H-HHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCccH-HHHHHHHHHhccCCchHHHHhcc-CCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 46667888886432222 44555554444443 44578999 8999999999963211 0035667888899999999
Q ss_pred ccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 020640 107 SIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLS 149 (323)
Q Consensus 107 s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~ 149 (323)
.........+....+.+..|+..|.+++..++..++.+|..+|
T Consensus 144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 8887788888888889999999999999999999999998876
No 126
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=96.45 E-value=0.12 Score=49.00 Aligned_cols=153 Identities=16% Similarity=0.155 Sum_probs=109.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCH----hHHHHHHHHHHHhccCCchhHH
Q 020640 123 IPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQ----SAMKDVASAIFNLCITHENKAR 198 (323)
Q Consensus 123 i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~----~~~~~al~aL~~L~~~~~~~~~ 198 (323)
...+..++.+++...+..+...|..++.+......+....++..|..++.+++. .+...+++++..+-.+.-.-..
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 345788889999888888999999999988888999999999999999998744 4555666666555332221111
Q ss_pred HHhhCchHHHHHHhhc----CchHHHHHHHHHHHhcCHH-HHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhccc
Q 020640 199 AVRDGGVSVILKKIMD----GVHVDELLAILAMLSTNHR-AVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLS 273 (323)
Q Consensus 199 i~~~g~v~~Lv~ll~~----~~~~~~a~~~L~~l~~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~ 273 (323)
.+...+|...+.+.+- ..+-..|+.+|.++..+.+ .+..+.++--++.|+.+++.++ ..++..|...+..+...
T Consensus 165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n-~~i~~~aial~nal~~~ 243 (713)
T KOG2999|consen 165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSN-QRIQTCAIALLNALFRK 243 (713)
T ss_pred ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcc-hHHHHHHHHHHHHHHhh
Confidence 2222233333333332 2567889999999999754 6666777788999999999765 88888888888887665
Q ss_pred ChH
Q 020640 274 DRT 276 (323)
Q Consensus 274 ~~~ 276 (323)
.++
T Consensus 244 a~~ 246 (713)
T KOG2999|consen 244 APD 246 (713)
T ss_pred CCh
Confidence 544
No 127
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=96.40 E-value=0.57 Score=44.85 Aligned_cols=271 Identities=8% Similarity=0.063 Sum_probs=155.1
Q ss_pred hHHHHHHHHhc-CC-chhHHHHHHHHHHHhccChhhHHHHhhhcCC-HHHHH-HhhcccccCCCCCHHHHHHHHHHHHH-
Q 020640 31 DHFLSLLKKMS-AT-LPDQTEAAKELRLLTKRMPSFRALFGESHDA-IPQLL-SPLSESKCENGINPNLQEDVITTLLN- 105 (323)
Q Consensus 31 ~~i~~Lv~~l~-~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~-i~~Lv-~lL~~~~~~~~~~~~~~~~a~~~L~~- 105 (323)
|.+..+++... +. ...+++++.++.+.|.+ ..-...+.. .+. +-.++ --+++ ..+..++-.|+.+|.+
T Consensus 133 ~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces-~~Pe~li~~-sN~il~aiv~ga~k~-----et~~avRLaaL~aL~ds 205 (858)
T COG5215 133 GLMEEMVRNVGDEQPVSGKCESLGICGYHCES-EAPEDLIQM-SNVILFAIVMGALKN-----ETTSAVRLAALKALMDS 205 (858)
T ss_pred HHHHHHHHhccccCchHhHHHHHHHHHHHhhc-cCHHHHHHH-hhHHHHHHHHhhccc-----CchHHHHHHHHHHHHHH
Confidence 44455555553 22 45689999999999954 433333333 443 22233 33332 4567888888888886
Q ss_pred hccccch--hhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CCCchhhhhccCChHHHHHHhhhcCHhHHHHH
Q 020640 106 LSIHDNN--KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSA-LDSNKEVIGKSGALKPLIDLLDEGHQSAMKDV 182 (323)
Q Consensus 106 ls~~~~~--~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a 182 (323)
+-.-..+ ++.-. .-+.......-+.++.+++..+.++|..+-. +-.......+.-....+...+++.+.++...+
T Consensus 206 l~fv~~nf~~E~er--Ny~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qa 283 (858)
T COG5215 206 LMFVQGNFCYEEER--NYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQA 283 (858)
T ss_pred HHHHHHhhcchhhh--chhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence 3222111 11111 1123334455567889999999999988742 22222233333233344456778888888888
Q ss_pred HHHHHHhccCC-chhHHHH----------------hhCchHHHHHHhhc-C--------chHHHHHHHHHHHhcCHHHHH
Q 020640 183 ASAIFNLCITH-ENKARAV----------------RDGGVSVILKKIMD-G--------VHVDELLAILAMLSTNHRAVE 236 (323)
Q Consensus 183 l~aL~~L~~~~-~~~~~i~----------------~~g~v~~Lv~ll~~-~--------~~~~~a~~~L~~l~~~~~~~~ 236 (323)
...-..+|... +....+. -..++|.|+.+|.. + .+-..|..+|.-.+.. ...
T Consensus 284 vEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~--~gd 361 (858)
T COG5215 284 VEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQL--KGD 361 (858)
T ss_pred HHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHH--hhh
Confidence 88766666543 2111111 12478889998874 1 2334443333333221 011
Q ss_pred HHHhcCCHHHHHHHHhc---cCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 020640 237 EIGDLGGVSCMLRIIRE---STCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERL 313 (323)
Q Consensus 237 ~i~~~g~i~~Lv~ll~~---~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l 313 (323)
. .+..+..+... +++-.-++.|+.++..+.......+..-+. ...++.+.....+..--++..++|++-.+
T Consensus 362 ~-----i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~i 435 (858)
T COG5215 362 K-----IMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSCLWVKSTTAWCFGAI 435 (858)
T ss_pred H-----hHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhcccceeehhhHHHHHHHHH
Confidence 1 22333333322 232445888999999987765443333332 57888888888877888999999999999
Q ss_pred hcchh
Q 020640 314 KRTVN 318 (323)
Q Consensus 314 ~~~~~ 318 (323)
+.|..
T Consensus 436 ad~va 440 (858)
T COG5215 436 ADHVA 440 (858)
T ss_pred HHHHH
Confidence 87653
No 128
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=0.28 Score=50.50 Aligned_cols=214 Identities=15% Similarity=0.141 Sum_probs=127.4
Q ss_pred CCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHH----hcCCHHHHHHHHHHHHHhcCC-C-CchhhhhccCC
Q 020640 90 GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDAL----RSGTIETRSNAAAALFTLSAL-D-SNKEVIGKSGA 163 (323)
Q Consensus 90 ~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll----~~~~~~~~~~a~~~L~~L~~~-~-~~~~~i~~~g~ 163 (323)
+.+..+|.++..+|..++..++. ...... .+..+.+.| ++.....+...+.+|..|-.. + +.... +.. .
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~~s~-~~~~~q--~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~-i~k-~ 739 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSSPSG-EGLVEQ--RIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDL-IPK-L 739 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcCCch-hhHHHH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHH-HHH-H
Confidence 44788999999999998876332 323322 244444444 444666777777777777422 2 22222 222 2
Q ss_pred hHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhC------chHHHHHHhhcC----chHHHHHHHHHHHhcCHH
Q 020640 164 LKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDG------GVSVILKKIMDG----VHVDELLAILAMLSTNHR 233 (323)
Q Consensus 164 i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g------~v~~Lv~ll~~~----~~~~~a~~~L~~l~~~~~ 233 (323)
|+.++=.+++.+...+..+..+|..++. .....+.| .+...+..+..+ .....+.. |-.+..-=.
T Consensus 740 I~EvIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~-Ivai~~il~ 814 (1176)
T KOG1248|consen 740 IPEVILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASD-IVAITHILQ 814 (1176)
T ss_pred HHHHHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHH-HHHHHHHHH
Confidence 3333334477788899999999988872 11111111 344455544433 23333333 222222111
Q ss_pred HHHHHHhc----CCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHH
Q 020640 234 AVEEIGDL----GGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGI 309 (323)
Q Consensus 234 ~~~~i~~~----g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~ 309 (323)
....+.+. +.++.+...|.. .+..+...|++.+..++..-|..+-... ....++.+..|+++....++.+...+
T Consensus 815 e~~~~ld~~~l~~li~~V~~~L~s-~sreI~kaAI~fikvlv~~~pe~~l~~~-~~~LL~sll~ls~d~k~~~r~Kvr~L 892 (1176)
T KOG1248|consen 815 EFKNILDDETLEKLISMVCLYLAS-NSREIAKAAIGFIKVLVYKFPEECLSPH-LEELLPSLLALSHDHKIKVRKKVRLL 892 (1176)
T ss_pred HHhccccHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHcCCHHHHhhh-HHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 11122333 345555555664 4499999999999999998876322222 23589999999999999999999999
Q ss_pred HHHHhc
Q 020640 310 LERLKR 315 (323)
Q Consensus 310 L~~l~~ 315 (323)
|..|.+
T Consensus 893 lekLir 898 (1176)
T KOG1248|consen 893 LEKLIR 898 (1176)
T ss_pred HHHHHH
Confidence 999886
No 129
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=96.31 E-value=0.3 Score=45.70 Aligned_cols=181 Identities=12% Similarity=0.137 Sum_probs=117.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCC----chhhhhccCChHHHHHHhhhc-------CHhHHHHHHHHHHHhccCCc
Q 020640 126 LMDALRSGTIETRSNAAAALFTLSALDS----NKEVIGKSGALKPLIDLLDEG-------HQSAMKDVASAIFNLCITHE 194 (323)
Q Consensus 126 Lv~ll~~~~~~~~~~a~~~L~~L~~~~~----~~~~i~~~g~i~~Lv~lL~~~-------~~~~~~~al~aL~~L~~~~~ 194 (323)
+..+++..+.+-+-.+.-.+..+..+++ +++.+.+.=+.+.+=+++..+ +...+.-++..|..+|+.++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 4456666677777777777777776654 577788877788888888763 33456677888999999886
Q ss_pred hh--HHHHhhCchHHHHHHhhcC---------chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHH
Q 020640 195 NK--ARAVRDGGVSVILKKIMDG---------VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENC 263 (323)
Q Consensus 195 ~~--~~i~~~g~v~~Lv~ll~~~---------~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a 263 (323)
.. ..++ ..||.|.+.+..+ .+.+.+-.+|..++..+.+...++..|+++.+.++-...+...-..-+
T Consensus 96 lAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~ala 173 (698)
T KOG2611|consen 96 LASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALA 173 (698)
T ss_pred hccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHH
Confidence 43 3444 4789999999754 257888999999999999999999999999999887743212223334
Q ss_pred HHHHHHhcccChH---hHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHH
Q 020640 264 IAILHTICLSDRT---KWKAMREEESTHGTISKLAQDGTARAKRKATGILE 311 (323)
Q Consensus 264 ~~~L~~L~~~~~~---~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~ 311 (323)
..++.-+...-.. ....+. ..+..+..=....+...|-..+.+|.
T Consensus 174 l~Vlll~~~~~~cw~e~~~~fl---ali~~va~df~~~~~a~KfElc~lL~ 221 (698)
T KOG2611|consen 174 LKVLLLLVSKLDCWSETIERFL---ALIAAVARDFAVLHNALKFELCHLLS 221 (698)
T ss_pred HHHHHHHHHhcccCcCCHHHHH---HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4444333322211 011111 12333333333345666777777777
No 130
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.26 E-value=0.073 Score=52.17 Aligned_cols=245 Identities=15% Similarity=0.143 Sum_probs=143.7
Q ss_pred HHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcccc
Q 020640 32 HFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD 110 (323)
Q Consensus 32 ~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~ 110 (323)
..+..++.+. .|.+.+.-.-.-+.+.+...++.. .+++..+++=.. ++++.++..|+..+..+-.
T Consensus 50 lF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a------~~avnt~~kD~~------d~np~iR~lAlrtm~~l~v-- 115 (734)
T KOG1061|consen 50 LFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA------ILAVNTFLKDCE------DPNPLIRALALRTMGCLRV-- 115 (734)
T ss_pred hhHHHHhhcccCCchHHHHHHHHHHHhhccCchHH------HhhhhhhhccCC------CCCHHHHHHHhhceeeEee--
Confidence 4444555553 445555556666666666555432 333444444333 7788888877777665532
Q ss_pred chhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhc
Q 020640 111 NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLC 190 (323)
Q Consensus 111 ~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~ 190 (323)
..+.+. ....+...+++.++.++..++-.+.++- ..+.......|.++.|-+++.+.++.+..+|+.+|..+.
T Consensus 116 ---~~i~ey--~~~Pl~~~l~d~~~yvRktaa~~vakl~--~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~ 188 (734)
T KOG1061|consen 116 ---DKITEY--LCDPLLKCLKDDDPYVRKTAAVCVAKLF--DIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIH 188 (734)
T ss_pred ---hHHHHH--HHHHHHHhccCCChhHHHHHHHHHHHhh--cCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 223332 3456778888999999998888777763 334556667999999999999889999999999999997
Q ss_pred cCCch--hHHHHhhCchHHHHHHhhcCchHHHHHHHHHHHhcC--HHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHH
Q 020640 191 ITHEN--KARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTN--HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAI 266 (323)
Q Consensus 191 ~~~~~--~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~l~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~ 266 (323)
..+.+ ...+. .-.+..++..+... ....-+.+|-.++.+ ++.++.. ..+..+...+++.. ..+...+...
T Consensus 189 e~~~~~~~~~l~-~~~~~~lL~al~ec-~EW~qi~IL~~l~~y~p~d~~ea~---~i~~r~~p~Lqh~n-~avvlsavKv 262 (734)
T KOG1061|consen 189 ESHPSVNLLELN-PQLINKLLEALNEC-TEWGQIFILDCLAEYVPKDSREAE---DICERLTPRLQHAN-SAVVLSAVKV 262 (734)
T ss_pred HhCCCCCccccc-HHHHHHHHHHHHHh-hhhhHHHHHHHHHhcCCCCchhHH---HHHHHhhhhhccCC-cceEeehHHH
Confidence 76543 11111 11223333333321 112223444445443 1112211 22455666666544 6677777777
Q ss_pred HHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHH
Q 020640 267 LHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKA 306 (323)
Q Consensus 267 L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A 306 (323)
+..+....+. +...+ .....++|+.++.+.. +.+.-|
T Consensus 263 ~l~~~~~~~~-~~~~~-~~K~~~pl~tlls~~~-e~qyva 299 (734)
T KOG1061|consen 263 ILQLVKYLKQ-VNELL-FKKVAPPLVTLLSSES-EIQYVA 299 (734)
T ss_pred HHHHHHHHHH-HHHHH-HHHhcccceeeecccc-hhhHHH
Confidence 7777766544 22222 2356677777776665 555543
No 131
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=96.25 E-value=0.91 Score=42.59 Aligned_cols=179 Identities=16% Similarity=0.187 Sum_probs=118.7
Q ss_pred CCCHHHHHHHHHHHHHhccccc----hhhhhhccCCcHHHHHHHHhcC-------CHHHHHHHHHHHHHhcCCCCc--hh
Q 020640 90 GINPNLQEDVITTLLNLSIHDN----NKKLVAETPMVIPLLMDALRSG-------TIETRSNAAAALFTLSALDSN--KE 156 (323)
Q Consensus 90 ~~~~~~~~~a~~~L~~ls~~~~----~~~~i~~~~g~i~~Lv~ll~~~-------~~~~~~~a~~~L~~L~~~~~~--~~ 156 (323)
..+.+-+-.|+-....+.+.++ +++.+++.-| .+.+=+++.+. +.-.+.-++.+|..+|..++. .+
T Consensus 22 ~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVG-f~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~ 100 (698)
T KOG2611|consen 22 GKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVG-FHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHE 100 (698)
T ss_pred ccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhc-cchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCH
Confidence 3455667777777778877766 4777888766 77788888643 233455677888888887764 34
Q ss_pred hhhccCChHHHHHHhhhc-C------HhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC---chHHHHHHHHH
Q 020640 157 VIGKSGALKPLIDLLDEG-H------QSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILA 226 (323)
Q Consensus 157 ~i~~~g~i~~Lv~lL~~~-~------~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~ 226 (323)
.+++ .||.|++++..+ + ..+...+-.+|+..+....+...++..|+++.+.++-.-. .-..-++.++.
T Consensus 101 ~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~Vll 178 (698)
T KOG2611|consen 101 EMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALALKVLL 178 (698)
T ss_pred HHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHHHHH
Confidence 4444 689999998763 2 3378889999999999988999999999999999876533 23344444444
Q ss_pred HHhcC----HHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccC
Q 020640 227 MLSTN----HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSD 274 (323)
Q Consensus 227 ~l~~~----~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~ 274 (323)
-.... ++.-..|..- |..+..-+...+ +..|...+.+|..+-...
T Consensus 179 l~~~~~~cw~e~~~~flal--i~~va~df~~~~-~a~KfElc~lL~~vl~~~ 227 (698)
T KOG2611|consen 179 LLVSKLDCWSETIERFLAL--IAAVARDFAVLH-NALKFELCHLLSAVLSSE 227 (698)
T ss_pred HHHHhcccCcCCHHHHHHH--HHHHHHHHHHhh-hHHHHHHHHHHHHHHhCC
Confidence 43331 3333334322 455554444334 667888888888554433
No 132
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=0.51 Score=48.28 Aligned_cols=254 Identities=16% Similarity=0.207 Sum_probs=154.1
Q ss_pred HHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHH
Q 020640 50 AAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDA 129 (323)
Q Consensus 50 a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~l 129 (323)
.-.+|..+-+++.+|++.|.+ +.|+..++.++- +.+-+..-+.++..|-..+..+. .. . -+-.+++.
T Consensus 662 gwDcLisllKnnteNqklFre-anGvklilpfli--------ndehRSslLrivscLitvdpkqv--hh-q-elmalVdt 728 (2799)
T KOG1788|consen 662 GWDCLISLLKNNTENQKLFRE-ANGVKLILPFLI--------NDEHRSSLLRIVSCLITVDPKQV--HH-Q-ELMALVDT 728 (2799)
T ss_pred hHHHHHHHHhccchhhHHHHh-hcCceEEEEeee--------chHHHHHHHHHHHHHhccCcccc--cH-H-HHHHHHHH
Confidence 356777888889999999999 999999988885 33445555555554433222111 10 1 13346666
Q ss_pred HhcC------------CHHHHHHHHHHHHHhcC-CCCchhhhhccCChHHHHHHhhh----------cCHhHHHHHHHHH
Q 020640 130 LRSG------------TIETRSNAAAALFTLSA-LDSNKEVIGKSGALKPLIDLLDE----------GHQSAMKDVASAI 186 (323)
Q Consensus 130 l~~~------------~~~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~----------~~~~~~~~al~aL 186 (323)
|+++ .........++++..-. +...+..+++.|+...|...|.. ++..+-..-...|
T Consensus 729 Lksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkil 808 (2799)
T KOG1788|consen 729 LKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKIL 808 (2799)
T ss_pred HHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHH
Confidence 6653 23455667788888764 34557777889999999888752 1222222222333
Q ss_pred HH-----hccCCchhHHH------------Hhh-C---------chHHHHHHh-h---cCc--hHHHHHHHHHHHhc---
Q 020640 187 FN-----LCITHENKARA------------VRD-G---------GVSVILKKI-M---DGV--HVDELLAILAMLST--- 230 (323)
Q Consensus 187 ~~-----L~~~~~~~~~i------------~~~-g---------~v~~Lv~ll-~---~~~--~~~~a~~~L~~l~~--- 230 (323)
+. +|.+..|+..+ ++. | .+..+.++- . ... -...|+.-+-.+-.
T Consensus 809 FrlfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednif 888 (2799)
T KOG1788|consen 809 FRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIF 888 (2799)
T ss_pred HHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhccccee
Confidence 22 24455555432 121 2 111111110 0 011 11222322222211
Q ss_pred --------CHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHh---hcCC
Q 020640 231 --------NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLA---QDGT 299 (323)
Q Consensus 231 --------~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll---~~~~ 299 (323)
....++.|...|++..|+..+-.. ++++|..-...+..+++.++.. .+.....||++.|++++ .+|+
T Consensus 889 avntPsGqfnpdk~~iynagavRvlirslLln-ypK~qlefl~lleSlaRaspfn-aelltS~gcvellleIiypflsgs 966 (2799)
T KOG1788|consen 889 AVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLN-YPKLQLEFLNLLESLARASPFN-AELLTSAGCVELLLEIIYPFLSGS 966 (2799)
T ss_pred eeccCCCCcCchHhhhcccchhHHHHHHHHhh-ChHHHHHHHHHHHHHhhcCCCc-hhhhhcccHHHHHHHHhhhhhcCC
Confidence 124677889999999999888754 4999999999999999988764 46667789999999985 4566
Q ss_pred HHHHHHHHHHHHHHhcchh
Q 020640 300 ARAKRKATGILERLKRTVN 318 (323)
Q Consensus 300 ~~~~~~A~~~L~~l~~~~~ 318 (323)
...--.|..++..|+.++.
T Consensus 967 spfLshalkIvemLgayrl 985 (2799)
T KOG1788|consen 967 SPFLSHALKIVEMLGAYRL 985 (2799)
T ss_pred chHhhccHHHHHHHhhccC
Confidence 6666677778888876553
No 133
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.14 E-value=0.21 Score=43.22 Aligned_cols=143 Identities=10% Similarity=0.111 Sum_probs=99.5
Q ss_pred CHhHHHHHHHHHHHhccCCchhHHHH-hh-CchHHHHHHhhc-------Cc-------hHHHHHHHHHHHhcCHHHHHHH
Q 020640 175 HQSAMKDVASAIFNLCITHENKARAV-RD-GGVSVILKKIMD-------GV-------HVDELLAILAMLSTNHRAVEEI 238 (323)
Q Consensus 175 ~~~~~~~al~aL~~L~~~~~~~~~i~-~~-g~v~~Lv~ll~~-------~~-------~~~~a~~~L~~l~~~~~~~~~i 238 (323)
+++.++.|+.-|+.--...++-..++ .. |.+..|++=+-+ +. -.-+++..|..+|++|+.|..|
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 56677777766655433333444333 33 777776653322 21 1345778888899999999999
Q ss_pred HhcCCHHHHHHHHhccC----ChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 020640 239 GDLGGVSCMLRIIREST----CDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK 314 (323)
Q Consensus 239 ~~~g~i~~Lv~ll~~~~----~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~ 314 (323)
+++...-.|..++...+ -+.++-.+.+++..|...+....-.++.+.++++.-++.+..|++..|.-|..++..+-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99997666667775422 15578999999999999776656677778999999999999999999999999999876
Q ss_pred cch
Q 020640 315 RTV 317 (323)
Q Consensus 315 ~~~ 317 (323)
-..
T Consensus 168 ~dd 170 (262)
T PF04078_consen 168 LDD 170 (262)
T ss_dssp HSH
T ss_pred cch
Confidence 543
No 134
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.11 E-value=0.7 Score=42.01 Aligned_cols=196 Identities=10% Similarity=0.057 Sum_probs=139.4
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-chh-hhhc--cCChHHHHHHhhh--cCHhHHHHHHHHHHHhccCCc
Q 020640 121 MVIPLLMDALRSGTIETRSNAAAALFTLSALDS-NKE-VIGK--SGALKPLIDLLDE--GHQSAMKDVASAIFNLCITHE 194 (323)
Q Consensus 121 g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~-~~~-~i~~--~g~i~~Lv~lL~~--~~~~~~~~al~aL~~L~~~~~ 194 (323)
+.+..|+..|..-+-+.++.++.+..++..... ++. ..++ ..--|.++..|-. +++++...+...|+..+.+..
T Consensus 76 dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~ 155 (335)
T PF08569_consen 76 DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHES 155 (335)
T ss_dssp THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHH
T ss_pred CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHH
Confidence 478889999999899999999999999975432 222 1121 1121333443333 377888889999999888887
Q ss_pred hhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHH-hcCHHHHHHHHhcC---CHHHHHHHHhccCChhHHHHHHHHHH
Q 020640 195 NKARAVRDGGVSVILKKIMDG--VHVDELLAILAML-STNHRAVEEIGDLG---GVSCMLRIIRESTCDRNKENCIAILH 268 (323)
Q Consensus 195 ~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l-~~~~~~~~~i~~~g---~i~~Lv~ll~~~~~~~~~~~a~~~L~ 268 (323)
....++....+..+.+.+..+ ++...|..++..+ ..++.....+.... .+..+..++.++ +--++++++..|.
T Consensus 156 l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~-NYvtkrqslkLL~ 234 (335)
T PF08569_consen 156 LAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESS-NYVTKRQSLKLLG 234 (335)
T ss_dssp HHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-S-SHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC-CeEeehhhHHHHH
Confidence 788888888888899988877 6788888888874 45677767666553 567777888854 4778999999999
Q ss_pred HhcccChH--hHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 020640 269 TICLSDRT--KWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 317 (323)
Q Consensus 269 ~L~~~~~~--~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 317 (323)
.+-.+..+ .....+.+..-+..++.++++.+..++-.|=.+.+.+...+
T Consensus 235 ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 235 ELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred HHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 99887754 12244456778888999999999999999988888776543
No 135
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=96.10 E-value=0.02 Score=48.64 Aligned_cols=87 Identities=15% Similarity=0.144 Sum_probs=70.7
Q ss_pred chHHHHHHHHHHHhcCHHHHHHHHhcC-------CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccH
Q 020640 216 VHVDELLAILAMLSTNHRAVEEIGDLG-------GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTH 288 (323)
Q Consensus 216 ~~~~~a~~~L~~l~~~~~~~~~i~~~g-------~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i 288 (323)
.++..++.+|+.|+..+.+.+.+..++ .+..|++++....+...+|-|+-+|.+|+..++...+.+-.+.+++
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 468999999999999998888887766 4555666665555577899999999999999987777777789999
Q ss_pred HHHHHHhhcCCHHH
Q 020640 289 GTISKLAQDGTARA 302 (323)
Q Consensus 289 ~~L~~ll~~~~~~~ 302 (323)
..|+.++.+.....
T Consensus 219 ~~Li~FiE~a~~~~ 232 (257)
T PF12031_consen 219 SHLIAFIEDAEQNA 232 (257)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998764443
No 136
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.95 E-value=0.025 Score=42.88 Aligned_cols=72 Identities=7% Similarity=0.042 Sum_probs=59.8
Q ss_pred CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640 243 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 315 (323)
Q Consensus 243 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 315 (323)
++..|+++|..++++.+..-||.=|..++...|. -+.++.+.|+-..+.+++.+++++++..|..+++.+..
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~-gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN-GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG-GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChh-HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 6899999996554466777799999999999876 57888889999999999999999999999999988764
No 137
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.91 E-value=1.7 Score=44.06 Aligned_cols=220 Identities=15% Similarity=0.146 Sum_probs=123.1
Q ss_pred hhhhHHHHHHHHhcC--C---chhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCC----CHHHHHH
Q 020640 28 ADRDHFLSLLKKMSA--T---LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGI----NPNLQED 98 (323)
Q Consensus 28 ~~~~~i~~Lv~~l~~--~---~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~----~~~~~~~ 98 (323)
.+.|.+..+++++.. + .......+.-|...|-.-+.+|+.+.+ .|+++.|++.|..... ++ ..++-+.
T Consensus 114 ~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~-~~al~~LL~~L~~~l~--~~~~~~~~~i~E~ 190 (802)
T PF13764_consen 114 AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLE-LNALNRLLSVLNRALQ--ANQNSSQAEIAEQ 190 (802)
T ss_pred hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHH-cCCHHHHHHHHHHHHh--CccccccchHHHH
Confidence 556778888888852 1 222333444444444457899999999 9999999999863222 22 2567777
Q ss_pred HHHHHHHhccccchh-h----h---hh----ccCCcHHHHHHHHhcC----CHHHHHHHHHHHHHhcCCCCchhhhhccC
Q 020640 99 VITTLLNLSIHDNNK-K----L---VA----ETPMVIPLLMDALRSG----TIETRSNAAAALFTLSALDSNKEVIGKSG 162 (323)
Q Consensus 99 a~~~L~~ls~~~~~~-~----~---i~----~~~g~i~~Lv~ll~~~----~~~~~~~a~~~L~~L~~~~~~~~~i~~~g 162 (323)
.+.++..+....... . . .. +....+..+++.+.+. ++.+....+++|-.|+..++.+....-..
T Consensus 191 LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~ 270 (802)
T PF13764_consen 191 LLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH 270 (802)
T ss_pred HHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH
Confidence 777776553322210 0 0 00 0111255566666543 68889999999999987654433221111
Q ss_pred ChHHHHHHhh--hcCHhHHHHHHHHHHHhccCC-------chhHHHHhhCchHHHHHHhhcC------------------
Q 020640 163 ALKPLIDLLD--EGHQSAMKDVASAIFNLCITH-------ENKARAVRDGGVSVILKKIMDG------------------ 215 (323)
Q Consensus 163 ~i~~Lv~lL~--~~~~~~~~~al~aL~~L~~~~-------~~~~~i~~~g~v~~Lv~ll~~~------------------ 215 (323)
..+.+++=+ .....--..-+.++..++.+= .-|..+++.|.+...+++|...
T Consensus 271 -F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ 349 (802)
T PF13764_consen 271 -FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSR 349 (802)
T ss_pred -HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcC
Confidence 122222211 111111122344454443321 3466788999999999988743
Q ss_pred chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHh
Q 020640 216 VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIR 252 (323)
Q Consensus 216 ~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~ 252 (323)
.-...++.+|.=||.+...-+.++..++++ +++-|.
T Consensus 350 psLp~iL~lL~GLa~gh~~tQ~~~~~~~l~-~lH~LE 385 (802)
T PF13764_consen 350 PSLPYILRLLRGLARGHEPTQLLIAEQLLP-LLHRLE 385 (802)
T ss_pred CcHHHHHHHHHHHHhcCHHHHHHHHhhHHH-HHHHhh
Confidence 113457888888888644333335556664 444443
No 138
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=95.89 E-value=0.47 Score=46.75 Aligned_cols=216 Identities=9% Similarity=0.049 Sum_probs=126.5
Q ss_pred CCCHHHHHHHHHHHHHhccccchh--hhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhc--cCChH
Q 020640 90 GINPNLQEDVITTLLNLSIHDNNK--KLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK--SGALK 165 (323)
Q Consensus 90 ~~~~~~~~~a~~~L~~ls~~~~~~--~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~--~g~i~ 165 (323)
+..+.++..|+.++..++.--..+ ..+...-|+ .|...|....+++.-..++++..+...-. ..++.. .+.+|
T Consensus 810 nksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvig-m~km~pPi~dllP 886 (1172)
T KOG0213|consen 810 NKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIG-MTKMTPPIKDLLP 886 (1172)
T ss_pred CCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhcc-ccccCCChhhhcc
Confidence 667899999999998887533322 223333343 37777888888888877777776642211 111111 57899
Q ss_pred HHHHHhhhcCHhHHHHHHHHHHHhccCCchh----HHH-HhhCchHHHHHHhhcC--chHHHHHHHHHHHhc--CH----
Q 020640 166 PLIDLLDEGHQSAMKDVASAIFNLCITHENK----ARA-VRDGGVSVILKKIMDG--VHVDELLAILAMLST--NH---- 232 (323)
Q Consensus 166 ~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~----~~i-~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~--~~---- 232 (323)
.|..+|++....++.+++..+..+|...... .-+ +-. .|+++|++. .++..|...+..++. .|
T Consensus 887 rltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcf----eLlelLkahkK~iRRaa~nTfG~IakaIGPqdVL 962 (1172)
T KOG0213|consen 887 RLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICF----ELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVL 962 (1172)
T ss_pred cchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHH
Confidence 9999999999999999999999999866432 111 111 255555543 455555544444443 11
Q ss_pred ----------H--------HHHHHH-hc-CCHHHHHHHHhcc--CChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHH
Q 020640 233 ----------R--------AVEEIG-DL-GGVSCMLRIIRES--TCDRNKENCIAILHTICLSDRTKWKAMREEESTHGT 290 (323)
Q Consensus 233 ----------~--------~~~~i~-~~-g~i~~Lv~ll~~~--~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~ 290 (323)
+ ..-.|+ +. |-...|=.++.+. ++..+|.-.+++++.+...-.+..+.-+ ....+.
T Consensus 963 atLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYi--yav~Pl 1040 (1172)
T KOG0213|consen 963 ATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYI--YAVTPL 1040 (1172)
T ss_pred HHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHH--HHhhHH
Confidence 0 111122 22 3222222333332 2256788888888877665433222222 234555
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHh
Q 020640 291 ISKLAQDGTARAKRKATGILERLK 314 (323)
Q Consensus 291 L~~ll~~~~~~~~~~A~~~L~~l~ 314 (323)
|-.-+-+.+..-++-|+.+++-++
T Consensus 1041 leDAlmDrD~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen 1041 LEDALMDRDLVHRQTAMNVIKHLA 1064 (1172)
T ss_pred HHHhhccccHHHHHHHHHHHHHHh
Confidence 555566667777777777777665
No 139
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=95.81 E-value=0.59 Score=42.46 Aligned_cols=214 Identities=13% Similarity=0.152 Sum_probs=146.3
Q ss_pred hhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHH-----HHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHH
Q 020640 30 RDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRA-----LFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTL 103 (323)
Q Consensus 30 ~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~-----~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L 103 (323)
.+.+..|+..|. -+-+.|..+.....++.+.....+. .+.. --|.++..|-.+ -+++++.-.+-..|
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~---~~peil~~L~~g----y~~~dial~~g~ml 147 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLER---HRPEILDILLRG----YENPDIALNCGDML 147 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT-----THHHHHHHHG----GGSTTTHHHHHHHH
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHh---CCHHHHHHHHHH----hcCccccchHHHHH
Confidence 355666666664 4567788888888888876655432 2222 223344334333 34678888888889
Q ss_pred HHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhc-CCCCchhhhhc---cCChHHHHHHhhhcCHhHH
Q 020640 104 LNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLS-ALDSNKEVIGK---SGALKPLIDLLDEGHQSAM 179 (323)
Q Consensus 104 ~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~-~~~~~~~~i~~---~g~i~~Lv~lL~~~~~~~~ 179 (323)
+.+..++.-.+.+...+ .+..+....+.++-++...|..++..+- .+......... ........++|.+++=-++
T Consensus 148 Rec~k~e~l~~~iL~~~-~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk 226 (335)
T PF08569_consen 148 RECIKHESLAKIILYSE-CFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK 226 (335)
T ss_dssp HHHTTSHHHHHHHHTSG-GGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred HHHHhhHHHHHHHhCcH-HHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence 99988887666677755 6777899999999999999999999974 55544333333 3456677788999999999
Q ss_pred HHHHHHHHHhccCCchhHHHHh----hCchHHHHHHhhcC--chHHHHHHHHHHHhcC----HHHHHHHHhcCCHHHHHH
Q 020640 180 KDVASAIFNLCITHENKARAVR----DGGVSVILKKIMDG--VHVDELLAILAMLSTN----HRAVEEIGDLGGVSCMLR 249 (323)
Q Consensus 180 ~~al~aL~~L~~~~~~~~~i~~----~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~----~~~~~~i~~~g~i~~Lv~ 249 (323)
..++..|..|-.+..|-..+.. ..-+..++.+|++. .++..|.-++--...+ ++.+..+..+. ..|+.
T Consensus 227 rqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr--~kLl~ 304 (335)
T PF08569_consen 227 RQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNR--EKLLR 304 (335)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTH--HHHHH
T ss_pred hhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHH--HHHHH
Confidence 9999999999988887665533 25677888888876 7899998888877775 35666666553 55555
Q ss_pred HHhc
Q 020640 250 IIRE 253 (323)
Q Consensus 250 ll~~ 253 (323)
.+..
T Consensus 305 fl~~ 308 (335)
T PF08569_consen 305 FLKD 308 (335)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 5554
No 140
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.80 E-value=0.045 Score=41.51 Aligned_cols=77 Identities=12% Similarity=0.246 Sum_probs=63.7
Q ss_pred cccchhhhhHHHHHHHHhc--CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHH
Q 020640 23 EGITEADRDHFLSLLKKMS--ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVI 100 (323)
Q Consensus 23 ~~~~~~~~~~i~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~ 100 (323)
.-+.+.+...+..|++.|. +|+.+..-|+.-|..+++.-|..|..+.+ .|+=+.+++++. ++|++++..|+
T Consensus 35 ~kf~~~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~-lg~K~~vM~Lm~------h~d~eVr~eAL 107 (119)
T PF11698_consen 35 DKFEENNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEK-LGAKERVMELMN------HEDPEVRYEAL 107 (119)
T ss_dssp GGGSSGGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHH-HSHHHHHHHHTS-------SSHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHh-cChHHHHHHHhc------CCCHHHHHHHH
Confidence 3345577789999999994 45677777999999999999999888888 999999999999 78999999999
Q ss_pred HHHHHh
Q 020640 101 TTLLNL 106 (323)
Q Consensus 101 ~~L~~l 106 (323)
.++..+
T Consensus 108 ~avQkl 113 (119)
T PF11698_consen 108 LAVQKL 113 (119)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998765
No 141
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=95.80 E-value=0.32 Score=46.89 Aligned_cols=151 Identities=15% Similarity=0.147 Sum_probs=96.3
Q ss_pred ChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhh-CchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHH-
Q 020640 163 ALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRD-GGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEI- 238 (323)
Q Consensus 163 ~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~-g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i- 238 (323)
++...+++|++..+.++..|+.....|+.--.++.+.-.. ..-..|.+.|... ++.-..+.+++.+.+.-..+..-
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqp 684 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQP 684 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCC
Confidence 5666777888899999999999888875432222221111 1122355555433 34444444444444321111100
Q ss_pred HhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640 239 GDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 315 (323)
Q Consensus 239 ~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 315 (323)
=-.|++|.|..+|+..+ .+++.+....+.-+|...++. -...+=..+.--|++.+++.+.+++++|...+--+++
T Consensus 685 Pi~~ilP~ltPILrnkh-~Kv~~nti~lvg~I~~~~pey-i~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 685 PISGILPSLTPILRNKH-QKVVANTIALVGTICMNSPEY-IGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred chhhccccccHhhhhhh-HHHhhhHHHHHHHHHhcCccc-CCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 11378999999999877 899999999999999988762 2222223466778888999999999999887765554
No 142
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.79 E-value=0.069 Score=39.16 Aligned_cols=91 Identities=13% Similarity=0.086 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhc-cCCcHHH
Q 020640 47 QTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAE-TPMVIPL 125 (323)
Q Consensus 47 ~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~-~~g~i~~ 125 (323)
|.-++..|...+..-+..-....+ ..+++++..+. +++..++..|+.+|+|++..-. ..+.. -..+...
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~--~Il~pVL~~~~------D~d~rVRy~AcEaL~ni~k~~~--~~~l~~f~~IF~~ 72 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLD--EILPPVLKCFD------DQDSRVRYYACEALYNISKVAR--GEILPYFNEIFDA 72 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHH--HHHHHHHHHcC------CCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 456677777776554443333333 47888888888 8899999999999999986543 22221 1236777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHh
Q 020640 126 LMDALRSGTIETRSNAAAALFTL 148 (323)
Q Consensus 126 Lv~ll~~~~~~~~~~a~~~L~~L 148 (323)
|.+++.+.++.++..| ..|-+|
T Consensus 73 L~kl~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 73 LCKLSADPDENVRSAA-ELLDRL 94 (97)
T ss_pred HHHHHcCCchhHHHHH-HHHHHH
Confidence 7888788887777655 554443
No 143
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.71 E-value=0.079 Score=36.52 Aligned_cols=68 Identities=12% Similarity=0.182 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhccc
Q 020640 218 VDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEEST 287 (323)
Q Consensus 218 ~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~ 287 (323)
.+.+++++.++++.+.+...+-+.++++.++++.+.++...+|--|.-+|..++...+. .+++.+.|+
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G--~~~L~~~gW 71 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEG--AEILDELGW 71 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHH--HHHHHHcCC
Confidence 46799999999999999998888899999999999766677888999999999887754 466666654
No 144
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.55 E-value=2.4 Score=42.14 Aligned_cols=254 Identities=17% Similarity=0.147 Sum_probs=125.7
Q ss_pred HHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchh
Q 020640 35 SLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNK 113 (323)
Q Consensus 35 ~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~ 113 (323)
.+-+.++ ....+..+|...+..+...+. +.+.. .+..|--+|. ++.+.++-.|..+|..+|......
T Consensus 249 fl~s~l~~K~emV~~EaArai~~l~~~~~---r~l~p---avs~Lq~fls------sp~~~lRfaAvRtLnkvAm~~P~~ 316 (865)
T KOG1078|consen 249 FLESCLRHKSEMVIYEAARAIVSLPNTNS---RELAP---AVSVLQLFLS------SPKVALRFAAVRTLNKVAMKHPQA 316 (865)
T ss_pred HHHHHHhchhHHHHHHHHHHHhhccccCH---hhcch---HHHHHHHHhc------CcHHHHHHHHHHHHHHHHHhCCcc
Confidence 3334443 345677888888888875443 22222 5666666677 778899999999999887533322
Q ss_pred hhhhcc---------C--CcHHHHHHHHhcCCHHHHHHHHHHHHHhcC--CCCchhhhhc-------------cCChHHH
Q 020640 114 KLVAET---------P--MVIPLLMDALRSGTIETRSNAAAALFTLSA--LDSNKEVIGK-------------SGALKPL 167 (323)
Q Consensus 114 ~~i~~~---------~--g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~--~~~~~~~i~~-------------~g~i~~L 167 (323)
...... . -....+..+|+.+++........-+.+... .++.+..+++ .+.+..|
T Consensus 317 v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL 396 (865)
T KOG1078|consen 317 VTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFL 396 (865)
T ss_pred ccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHH
Confidence 211110 0 012234455666655555555444444432 2222222211 1112222
Q ss_pred HHHhhh-cCHhHHHHHHHHHHHhccCC-chhHHHHhhCchHHHHHHhhcCchHHHHHHHHHHHhcC-HHHHHHHHhcCCH
Q 020640 168 IDLLDE-GHQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTN-HRAVEEIGDLGGV 244 (323)
Q Consensus 168 v~lL~~-~~~~~~~~al~aL~~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i 244 (323)
..+|++ +.-+.+.....++..+.... +.|.. ++..|..++.+.....-+.++|.-+-.. |.. ..-...+
T Consensus 397 ~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDce~~~i~~rILhlLG~EgP~a---~~Pskyi 468 (865)
T KOG1078|consen 397 SNMLREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDCEFTQIAVRILHLLGKEGPKA---PNPSKYI 468 (865)
T ss_pred HHHHHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhccchHHHHHHHHHHhccCCCC---CCcchhh
Confidence 222222 12222222333332222211 11111 2223333333333333344433333221 100 0001134
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640 245 SCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 315 (323)
Q Consensus 245 ~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 315 (323)
..+...+--.+ ..++-.|..+|..+....+.. ...+.-.|..++.+.++++++.|...|.++..
T Consensus 469 r~iyNRviLEn-~ivRaaAv~alaKfg~~~~~l------~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 469 RFIYNRVILEN-AIVRAAAVSALAKFGAQDVVL------LPSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred HHHhhhhhhhh-hhhHHHHHHHHHHHhcCCCCc------cccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 44443333233 778889999999998655432 23445566667788899999999999999873
No 145
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.52 E-value=0.17 Score=43.95 Aligned_cols=96 Identities=16% Similarity=0.128 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhc-CHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhh
Q 020640 218 VDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQ 296 (323)
Q Consensus 218 ~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~ 296 (323)
...|+++|.-++. +|..|..+.++..+..|++++....+..++.+++.+|..+..+++.+.+ .+++.+|+..++.+++
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r-~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQR-DFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHH-HHHHhCCHHHHHHHHc
Confidence 4457788887777 7999999999999999999996444588999999999999999988765 5578999999999997
Q ss_pred cC--CHHHHHHHHHHHHHHh
Q 020640 297 DG--TARAKRKATGILERLK 314 (323)
Q Consensus 297 ~~--~~~~~~~A~~~L~~l~ 314 (323)
+. +.+++-|....|.-..
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred cccccHHHhHHHHHHHHHHH
Confidence 76 6888888777765443
No 146
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.43 E-value=1.2 Score=36.53 Aligned_cols=93 Identities=23% Similarity=0.229 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHh
Q 020640 92 NPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLL 171 (323)
Q Consensus 92 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL 171 (323)
++.++..++.++.-|+..- ..+++ + +++.+...|+++++.+++.|+.+|..|...+--+.+ ...+..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~---~~~ve-~-~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY---PNLVE-P-YLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC---cHHHH-h-HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHHH
Confidence 4688999999999887643 34444 2 688999999999999999999999999765432222 22347888889
Q ss_pred hhcCHhHHHHHHHHHHHhccC
Q 020640 172 DEGHQSAMKDVASAIFNLCIT 192 (323)
Q Consensus 172 ~~~~~~~~~~al~aL~~L~~~ 192 (323)
.++++.++..|..++..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 899999999999999988765
No 147
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.34 E-value=1.5 Score=43.88 Aligned_cols=165 Identities=12% Similarity=0.082 Sum_probs=103.7
Q ss_pred HhcCCHHHHHHHH-HHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHH
Q 020640 130 LRSGTIETRSNAA-AALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVI 208 (323)
Q Consensus 130 l~~~~~~~~~~a~-~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~L 208 (323)
+.+.+...+..|+ ++|..++..++ -. -..+.+++...+.+.++++..---|.+.+...+....+ +++.+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d-ms-----sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNti 97 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED-MS-----SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNTI 97 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC-hH-----HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHHH
Confidence 3444444444443 45555554443 11 13556666666777888888877777777766633333 45566
Q ss_pred HHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcc
Q 020640 209 LKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEES 286 (323)
Q Consensus 209 v~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~ 286 (323)
.+=+.++ .++-.|++.|.-+=. ++ ++. .+++.+.+.+++.+ +.++..|+-++..+-..++ .+..+.|
T Consensus 98 ~kDl~d~N~~iR~~AlR~ls~l~~-~e----l~~-~~~~~ik~~l~d~~-ayVRk~Aalav~kly~ld~----~l~~~~g 166 (757)
T COG5096 98 QKDLQDPNEEIRGFALRTLSLLRV-KE----LLG-NIIDPIKKLLTDPH-AYVRKTAALAVAKLYRLDK----DLYHELG 166 (757)
T ss_pred HhhccCCCHHHHHHHHHHHHhcCh-HH----HHH-HHHHHHHHHccCCc-HHHHHHHHHHHHHHHhcCH----hhhhccc
Confidence 6666655 355556655544322 11 111 23677778888665 8888888888888877664 3344567
Q ss_pred cHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640 287 THGTISKLAQDGTARAKRKATGILERLKR 315 (323)
Q Consensus 287 ~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 315 (323)
.+..+..++.+.+|.+..+|...|..+..
T Consensus 167 ~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 167 LIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 88888888888888888888888877754
No 148
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=95.34 E-value=0.36 Score=45.83 Aligned_cols=153 Identities=18% Similarity=0.196 Sum_probs=109.3
Q ss_pred ChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcCch------HHHHHHHHHHHhcCHHHHH
Q 020640 163 ALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVH------VDELLAILAMLSTNHRAVE 236 (323)
Q Consensus 163 ~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~------~~~a~~~L~~l~~~~~~~~ 236 (323)
....+.+++.+++...+..++.-|..|+.+..-...+++..++..|..++.+++. ...+++++..+-...-.-=
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 4567888888988888888999999999988889999999999999999998732 3344444444433211000
Q ss_pred HHHhcCCHHHHHHHHhcc-CChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640 237 EIGDLGGVSCMLRIIRES-TCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 315 (323)
Q Consensus 237 ~i~~~g~i~~Lv~ll~~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 315 (323)
..+...+|.....+..-. -+..+-..|+..|-++...++. ....+.++--++.|+..++.++.+++.+|..++..+..
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~-~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDT-LRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChH-HHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 011222333344333221 1245678899999999988865 45666788999999999999999999999999988765
Q ss_pred c
Q 020640 316 T 316 (323)
Q Consensus 316 ~ 316 (323)
-
T Consensus 243 ~ 243 (713)
T KOG2999|consen 243 K 243 (713)
T ss_pred h
Confidence 3
No 149
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.32 E-value=0.72 Score=46.07 Aligned_cols=147 Identities=16% Similarity=0.174 Sum_probs=100.4
Q ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHHhccChhhHHHHhh----h--cC------CHHHHHHhhcccccCCCCCHHHHHH
Q 020640 31 DHFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGE----S--HD------AIPQLLSPLSESKCENGINPNLQED 98 (323)
Q Consensus 31 ~~i~~Lv~~l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~----~--~g------~i~~Lv~lL~~~~~~~~~~~~~~~~ 98 (323)
+++..++..+....++..=....+.+.+..+.+.++.+.- . .. ++..+.+=+. ++|+.+|-.
T Consensus 38 dAmK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~------d~N~~iR~~ 111 (757)
T COG5096 38 DAMKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQ------DPNEEIRGF 111 (757)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhcc------CCCHHHHHH
Confidence 5667777777422234444455555555556666554221 0 10 1233333334 789999999
Q ss_pred HHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhH
Q 020640 99 VITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSA 178 (323)
Q Consensus 99 a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ 178 (323)
|++++..+=. ..+.. .+++.+.+++.++++.+++.|+-++..+=.- .+....+.|.+..+..++.+.++.+
T Consensus 112 AlR~ls~l~~-----~el~~--~~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~~l~~~~g~~~~l~~l~~D~dP~V 182 (757)
T COG5096 112 ALRTLSLLRV-----KELLG--NIIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DKDLYHELGLIDILKELVADSDPIV 182 (757)
T ss_pred HHHHHHhcCh-----HHHHH--HHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CHhhhhcccHHHHHHHHhhCCCchH
Confidence 9998886621 23333 2678899999999999999999999998532 3445566788889999999999999
Q ss_pred HHHHHHHHHHhccC
Q 020640 179 MKDVASAIFNLCIT 192 (323)
Q Consensus 179 ~~~al~aL~~L~~~ 192 (323)
..+|+.+|..+...
T Consensus 183 i~nAl~sl~~i~~e 196 (757)
T COG5096 183 IANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHHhchh
Confidence 99999999988554
No 150
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.24 E-value=0.23 Score=43.12 Aligned_cols=97 Identities=24% Similarity=0.219 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHH-hccccchhhhhhccCCcHHH
Q 020640 47 QTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN-LSIHDNNKKLVAETPMVIPL 125 (323)
Q Consensus 47 ~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~-ls~~~~~~~~i~~~~g~i~~ 125 (323)
...|+..|.-++.-.+..|..|.+ ...++.|+++|.. ...+.++..++.+|.. |..++.|.+.+-+.+| +..
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r-~~~m~lll~LL~~-----~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~G-l~~ 180 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHR-EQNMELLLDLLSP-----SNPPAIQSACLDTLVCILLDSPENQRDFEELNG-LST 180 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhh-hhhHHHHHHHhcc-----CCCchHHHHHHHHHHHHHHcChHHHHHHHHhCC-HHH
Confidence 456889999999999999999999 9999999999953 4578999999998875 4555568888888887 888
Q ss_pred HHHHHhcC--CHHHHHHHHHHHHHhcC
Q 020640 126 LMDALRSG--TIETRSNAAAALFTLSA 150 (323)
Q Consensus 126 Lv~ll~~~--~~~~~~~a~~~L~~L~~ 150 (323)
++.++++. +.+++..++..|+-...
T Consensus 181 v~~llk~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 181 VCSLLKSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred HHHHHccccccHHHhHHHHHHHHHHHc
Confidence 99999875 56777777777766543
No 151
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.23 E-value=3.7 Score=40.99 Aligned_cols=248 Identities=13% Similarity=0.107 Sum_probs=145.9
Q ss_pred chhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcH
Q 020640 44 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVI 123 (323)
Q Consensus 44 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i 123 (323)
+.+|..|+.+|-.+-.-+++.+..+.+ .+=.+|. +.++-+.-.|+.+...++- +.-..|.+ ..
T Consensus 157 ~yVRk~AA~AIpKLYsLd~e~k~qL~e------~I~~LLa------D~splVvgsAv~AF~evCP--erldLIHk---ny 219 (968)
T KOG1060|consen 157 PYVRKTAAHAIPKLYSLDPEQKDQLEE------VIKKLLA------DRSPLVVGSAVMAFEEVCP--ERLDLIHK---NY 219 (968)
T ss_pred HHHHHHHHHhhHHHhcCChhhHHHHHH------HHHHHhc------CCCCcchhHHHHHHHHhch--hHHHHhhH---HH
Confidence 678888999998888777776654444 2233444 6677888888887776653 22223322 25
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCC---Cc----------------------hhhhhccCChHHHH----HHhhhc
Q 020640 124 PLLMDALRSGTIETRSNAAAALFTLSALD---SN----------------------KEVIGKSGALKPLI----DLLDEG 174 (323)
Q Consensus 124 ~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~---~~----------------------~~~i~~~g~i~~Lv----~lL~~~ 174 (323)
+.+.++|..-++=.+...+..|..-|.+. +. +..++..-=+..|+ .+|.+.
T Consensus 220 rklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~ 299 (968)
T KOG1060|consen 220 RKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSR 299 (968)
T ss_pred HHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcC
Confidence 56666665544333444444443333210 10 01111111122333 345667
Q ss_pred CHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC-chHHHHHHHHHHHhcC------------------HH--
Q 020640 175 HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG-VHVDELLAILAMLSTN------------------HR-- 233 (323)
Q Consensus 175 ~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~-~~~~~a~~~L~~l~~~------------------~~-- 233 (323)
++.+...++.+.|.++--.+. .+.+..|+++|.+. .++...+..++-++.- +.
T Consensus 300 n~sVVmA~aql~y~lAP~~~~------~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~v 373 (968)
T KOG1060|consen 300 NPSVVMAVAQLFYHLAPKNQV------TKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQV 373 (968)
T ss_pred CcHHHHHHHhHHHhhCCHHHH------HHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHH
Confidence 899999999999999753321 13466899999876 5666666555555531 11
Q ss_pred ------HHHHHHhcCCHHHHH----HHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHH
Q 020640 234 ------AVEEIGDLGGVSCML----RIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAK 303 (323)
Q Consensus 234 ------~~~~i~~~g~i~~Lv----~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~ 303 (323)
.-..+++++-++.++ ..+++.+ ..+-..++.++..++...- .+ ..-|+..|+.++.+.+.-+-
T Consensus 374 k~lKleiLs~La~esni~~ILrE~q~YI~s~d-~~faa~aV~AiGrCA~~~~----sv--~~tCL~gLv~Llsshde~Vv 446 (968)
T KOG1060|consen 374 KILKLEILSNLANESNISEILRELQTYIKSSD-RSFAAAAVKAIGRCASRIG----SV--TDTCLNGLVQLLSSHDELVV 446 (968)
T ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHhhC----ch--hhHHHHHHHHHHhcccchhH
Confidence 112223444344433 3444333 3345555566665544331 22 46799999999999999999
Q ss_pred HHHHHHHHHHhcchhhcc
Q 020640 304 RKATGILERLKRTVNLTH 321 (323)
Q Consensus 304 ~~A~~~L~~l~~~~~~~~ 321 (323)
..|...++.|-...+..|
T Consensus 447 ~eaV~vIk~Llq~~p~~h 464 (968)
T KOG1060|consen 447 AEAVVVIKRLLQKDPAEH 464 (968)
T ss_pred HHHHHHHHHHHhhChHHH
Confidence 999999999998888877
No 152
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.22 E-value=1.7 Score=39.12 Aligned_cols=178 Identities=15% Similarity=0.146 Sum_probs=96.7
Q ss_pred CCHHHHHHHHHHHHHhccccchhhhhhc-cCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC---CCchhhhhccCChHH
Q 020640 91 INPNLQEDVITTLLNLSIHDNNKKLVAE-TPMVIPLLMDALRSGTIETRSNAAAALFTLSAL---DSNKEVIGKSGALKP 166 (323)
Q Consensus 91 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~-~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~---~~~~~~i~~~g~i~~ 166 (323)
.....++.++..+.++.........+.. ...++..+.+.++.+..+-+..|+.++.-++.. .+....+.+ ...|.
T Consensus 55 K~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-~~~~~ 133 (309)
T PF05004_consen 55 KSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE-ELKPV 133 (309)
T ss_pred cCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH-HHHHH
Confidence 3456677777766655433221111111 112455667777777766667787877777644 234555554 36788
Q ss_pred HHHHhhhcC--HhHHHHHHHHHHHhccCCc-hhHHHHh-hCchHHHH--HHhhc-C-----------chHHHHHHHHHHH
Q 020640 167 LIDLLDEGH--QSAMKDVASAIFNLCITHE-NKARAVR-DGGVSVIL--KKIMD-G-----------VHVDELLAILAML 228 (323)
Q Consensus 167 Lv~lL~~~~--~~~~~~al~aL~~L~~~~~-~~~~i~~-~g~v~~Lv--~ll~~-~-----------~~~~~a~~~L~~l 228 (323)
|.+.+.+++ ..++..++.+|.-++.... .-..+.+ ...+..+. ...+. + .+...|+..-.-|
T Consensus 134 L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lL 213 (309)
T PF05004_consen 134 LKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALL 213 (309)
T ss_pred HHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHH
Confidence 888888753 4566677777777655321 1111110 01222111 11221 1 2445555444444
Q ss_pred hc-CHHH-HHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 020640 229 ST-NHRA-VEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTIC 271 (323)
Q Consensus 229 ~~-~~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~ 271 (323)
.. .+.. ..... ...++.|+.+|.+. +..+|.+|..+|.-|.
T Consensus 214 lt~~~~~~~~~~~-~~~~~~l~~lL~s~-d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 214 LTTLPDSKLEDLL-EEALPALSELLDSD-DVDVRIAAGEAIALLY 256 (309)
T ss_pred HhcCCHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 44 2331 22222 24589999999965 4889999888887663
No 153
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.16 E-value=0.17 Score=49.94 Aligned_cols=153 Identities=18% Similarity=0.131 Sum_probs=115.8
Q ss_pred hHHHHHHHHhcCC--chhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc
Q 020640 31 DHFLSLLKKMSAT--LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 108 (323)
Q Consensus 31 ~~i~~Lv~~l~~~--~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~ 108 (323)
++++.+.+.++.+ ....-+++.++.|++..+...|..+.+ .-+++.+-.++. .+++..|..++..+.||..
T Consensus 541 ~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r~~i~k-e~~~~~ie~~~~------ee~~~lqraa~e~~~NLl~ 613 (748)
T KOG4151|consen 541 EVVKPLDSALHNDEKGLENFEALEALTNLASISESDRQKILK-EKALGKIEELMT------EENPALQRAALESIINLLW 613 (748)
T ss_pred hhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhHHHHHH-HhcchhhHHHhh------cccHHHHHHHHHHHHHHHh
Confidence 4677777777544 334567999999999988888888887 667777777766 6789999999999999999
Q ss_pred ccc-hhhhhhc-cCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCc-hhhhhc-cCChHHHHHHhhhcCHhHHHHHHH
Q 020640 109 HDN-NKKLVAE-TPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN-KEVIGK-SGALKPLIDLLDEGHQSAMKDVAS 184 (323)
Q Consensus 109 ~~~-~~~~i~~-~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~-~~~i~~-~g~i~~Lv~lL~~~~~~~~~~al~ 184 (323)
++. ....+++ +.+ .+.....+....+.....+++++..++...++ +..+.+ ......++.++.+++..++...+.
T Consensus 614 ~~~~~e~si~e~~~~-l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~ 692 (748)
T KOG4151|consen 614 SPLLYERSIVEYKDR-LKLWNLNLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLV 692 (748)
T ss_pred hHHHHHHHhhccccC-chHHHHHHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhh
Confidence 888 4556665 344 66666666667788888888888877655554 443444 667888999999999999988888
Q ss_pred HHHHhcc
Q 020640 185 AIFNLCI 191 (323)
Q Consensus 185 aL~~L~~ 191 (323)
...|+..
T Consensus 693 ~~ln~~~ 699 (748)
T KOG4151|consen 693 IILNLFE 699 (748)
T ss_pred hhhhHHH
Confidence 8877543
No 154
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.09 E-value=0.18 Score=40.53 Aligned_cols=143 Identities=17% Similarity=0.039 Sum_probs=93.4
Q ss_pred HHHHHHHhc---CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc-
Q 020640 33 FLSLLKKMS---ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI- 108 (323)
Q Consensus 33 i~~Lv~~l~---~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~- 108 (323)
+..++..|. ...++|..+..++..+- +..+..+.+ -+-+.+-..+.. .+.+-...+..++..+--
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~--~~~~~i~~~~~~------~~~d~~i~~~~~l~~lfp~ 73 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKE--KISDFIESLLDE------GEMDSLIIAFSALTALFPG 73 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHH--HHHHHHHHHHCC------HHCCHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHH--HHHHHHHHHHcc------ccchhHHHHHHHHHHHhCC
Confidence 445555553 34778888988888885 334444444 122223333332 223456677777776644
Q ss_pred ccchhhhhhccCCcHHHHHHHHh--cCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhh-cCHh-HHHHHHH
Q 020640 109 HDNNKKLVAETPMVIPLLMDALR--SGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE-GHQS-AMKDVAS 184 (323)
Q Consensus 109 ~~~~~~~i~~~~g~i~~Lv~ll~--~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~-~~~~al~ 184 (323)
.++-...+....|+.+.++.+.. ..+...+..++.+|..-|.+.+.|..+.+ .+++-|-++.+. ++.. ++..|+-
T Consensus 74 ~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~-~~~~~L~~~~~~~~~~~~ir~~A~v 152 (157)
T PF11701_consen 74 PPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK-NYVSWLKELYKNSKDDSEIRVLAAV 152 (157)
T ss_dssp THHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH-HCHHHHHHHTTTCC-HH-CHHHHHH
T ss_pred CHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH-HHHHHHHHHHccccchHHHHHHHHH
Confidence 34456677777789999999998 77888899999988888876666666555 468999999864 4555 6777776
Q ss_pred HHH
Q 020640 185 AIF 187 (323)
Q Consensus 185 aL~ 187 (323)
.|.
T Consensus 153 ~L~ 155 (157)
T PF11701_consen 153 GLC 155 (157)
T ss_dssp HHH
T ss_pred HHh
Confidence 664
No 155
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.09 E-value=0.67 Score=48.00 Aligned_cols=263 Identities=14% Similarity=0.143 Sum_probs=129.3
Q ss_pred HHHHHHHhc--CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc--
Q 020640 33 FLSLLKKMS--ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI-- 108 (323)
Q Consensus 33 i~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~-- 108 (323)
+..+-..+. ...+.|.+|+..|..++....+ +...+ -++|.++.++. +....+|..|+.+|..+-.
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d--e~~LD--RVlPY~v~l~~------Ds~a~Vra~Al~Tlt~~L~~V 493 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDD--EVKLD--RVLPYFVHLLM------DSEADVRATALETLTELLALV 493 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch--HHHHh--hhHHHHHHHhc------CchHHHHHHHHHHHHHHHhhc
Confidence 344444443 3467899999999999965432 22233 47999999999 7788999999998876532
Q ss_pred ---ccchhhhhhccCCcHHHHHHHHhcC-CHHHHHHHHHHHHHhcCC------------------CCchhhhhc---cC-
Q 020640 109 ---HDNNKKLVAETPMVIPLLMDALRSG-TIETRSNAAAALFTLSAL------------------DSNKEVIGK---SG- 162 (323)
Q Consensus 109 ---~~~~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~~L~~~------------------~~~~~~i~~---~g- 162 (323)
...+...+.+. ++|.|-.++.+. ...++..-+..|..||.. +.+-....+ ..
T Consensus 494 r~~~~~daniF~eY--lfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~ 571 (1431)
T KOG1240|consen 494 RDIPPSDANIFPEY--LFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTE 571 (1431)
T ss_pred cCCCcccchhhHhh--hhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchH
Confidence 22244445553 677777777663 333333334444443321 000000000 00
Q ss_pred ------ChHHHH-HHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcCch--HHHHHHHHHHHhcCHH
Q 020640 163 ------ALKPLI-DLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVH--VDELLAILAMLSTNHR 233 (323)
Q Consensus 163 ------~i~~Lv-~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~--~~~a~~~L~~l~~~~~ 233 (323)
.++.++ .+|.+.++-++..-+..|.-||....-.. .+.=.++.|+.+|.+.+- +-.=...+.-+|.+=
T Consensus 572 ~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k--sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~V- 648 (1431)
T KOG1240|consen 572 LQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK--SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFV- 648 (1431)
T ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc--cccchHHHHHHHhcCccHHHHHHHHhhccceEEEE-
Confidence 111111 12222233444444444444443221000 000134445555544421 111111111111210
Q ss_pred HHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 020640 234 AVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERL 313 (323)
Q Consensus 234 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l 313 (323)
-..=++++.+|.|.+-+.++. +-+...|+++|..|+..+ ..++.. --.+++-..-++-+.+.=+++.+.+++...
T Consensus 649 -G~rs~seyllPLl~Q~ltD~E-E~Viv~aL~~ls~Lik~~--ll~K~~-v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~ 723 (1431)
T KOG1240|consen 649 -GWRSVSEYLLPLLQQGLTDGE-EAVIVSALGSLSILIKLG--LLRKPA-VKDILQDVLPLLCHPNLWIRRAVLGIIAAI 723 (1431)
T ss_pred -eeeeHHHHHHHHHHHhccCcc-hhhHHHHHHHHHHHHHhc--ccchHH-HHHHHHhhhhheeCchHHHHHHHHHHHHHH
Confidence 000123445666666666554 667777777777777654 222221 223333333345666777777777776655
Q ss_pred hc
Q 020640 314 KR 315 (323)
Q Consensus 314 ~~ 315 (323)
.+
T Consensus 724 ~~ 725 (1431)
T KOG1240|consen 724 AR 725 (1431)
T ss_pred Hh
Confidence 43
No 156
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.01 E-value=2.5 Score=37.81 Aligned_cols=185 Identities=14% Similarity=0.103 Sum_probs=119.0
Q ss_pred hHHHHHH-HHh-cCCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc
Q 020640 31 DHFLSLL-KKM-SATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 108 (323)
Q Consensus 31 ~~i~~Lv-~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~ 108 (323)
+.+..|+ .-+ +.++.+|..|+.+|.-.+.-+.+.. . ..++.+...++ .++..++..|+.++.-+..
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a----~--~~l~l~~~~~~------~~~~~v~~~al~~l~Dll~ 93 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELA----K--EHLPLFLQALQ------KDDEEVKITALKALFDLLL 93 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHH----H--HHHHHHHHHHH------hCCHHHHHHHHHHHHHHHH
Confidence 4566655 333 3668999999999999998765432 2 23666777776 4588999999999987643
Q ss_pred cc--chhhhhh------ccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhh----cCH
Q 020640 109 HD--NNKKLVA------ETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE----GHQ 176 (323)
Q Consensus 109 ~~--~~~~~i~------~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~----~~~ 176 (323)
.. +.-.... ....+.+.+.+.+.+.+++++..++..+..|-...-... ...++..|+-+--+ ++.
T Consensus 94 ~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~ 170 (298)
T PF12719_consen 94 THGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQ 170 (298)
T ss_pred HcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcH
Confidence 21 1111111 112367778888888999999999999999865443222 13345555544333 345
Q ss_pred hHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcCch---------HHHHHHHHHHHhc
Q 020640 177 SAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVH---------VDELLAILAMLST 230 (323)
Q Consensus 177 ~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~---------~~~a~~~L~~l~~ 230 (323)
..+..-...+-..|......+..+....++.+-.+.+.... -......+..++.
T Consensus 171 ~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~ 233 (298)
T PF12719_consen 171 RLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTD 233 (298)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCC
Confidence 66666666777778877766676667688887777764311 3345555555555
No 157
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.99 E-value=2 Score=42.57 Aligned_cols=54 Identities=17% Similarity=0.107 Sum_probs=31.1
Q ss_pred CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640 42 ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 106 (323)
Q Consensus 42 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l 106 (323)
.+..+|++|+.++..+-+.... .+ ..+-+.+-++|.+ ..|+...++|...|...
T Consensus 146 rhsYVRrNAilaifsIyk~~~~---L~---pDapeLi~~fL~~-----e~DpsCkRNAFi~L~~~ 199 (948)
T KOG1058|consen 146 RHSYVRRNAILAIFSIYKNFEH---LI---PDAPELIESFLLT-----EQDPSCKRNAFLMLFTT 199 (948)
T ss_pred cchhhhhhhheeehhHHhhhhh---hc---CChHHHHHHHHHh-----ccCchhHHHHHHHHHhc
Confidence 3466788888888777753221 11 2334444455543 45677777776666543
No 158
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=94.97 E-value=3.1 Score=38.65 Aligned_cols=209 Identities=12% Similarity=0.105 Sum_probs=127.2
Q ss_pred HHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc-----ccchhhhhhccCCcH
Q 020640 49 EAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI-----HDNNKKLVAETPMVI 123 (323)
Q Consensus 49 ~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~-----~~~~~~~i~~~~g~i 123 (323)
.|+..|-.+....+..-..|.+ .+|+..+++.++. ++.. +..- ..... ..+.+..... +
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~-~~G~~~li~rl~~---------Ev~~-~~~~-~~~~~~~~~~~~~~~~~~~~-~--- 66 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRN-LNGLDILIDRLQY---------EVDF-ALEE-NKNEEAGSGIPPEYKESSVD-G--- 66 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHh-CCCHHHHHHHHHH---------HHHH-HHhc-ccccCCCCCCCCCccccccc-c---
Confidence 4667777777666666778888 9999999999982 1111 1110 00000 0001111110 0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcC-CCCc---hhhhhc-cCChHHHHHHhhhc---CHhHHHHHHHHHHHhccCCch
Q 020640 124 PLLMDALRSGTIETRSNAAAALFTLSA-LDSN---KEVIGK-SGALKPLIDLLDEG---HQSAMKDVASAIFNLCITHEN 195 (323)
Q Consensus 124 ~~Lv~ll~~~~~~~~~~a~~~L~~L~~-~~~~---~~~i~~-~g~i~~Lv~lL~~~---~~~~~~~al~aL~~L~~~~~~ 195 (323)
..+........+..++++..+.. .... -..+.+ ...+..|-.+++.. .+.+...|+..+..+-.+++.
T Consensus 67 ----~~i~~~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT 142 (379)
T PF06025_consen 67 ----YSISYQRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPT 142 (379)
T ss_pred ----cccCHHHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCc
Confidence 00011122334444445544444 2222 233444 33445555566653 567888999999999888877
Q ss_pred hHHHH-hhCchHHHHHHhh-cC-----chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCC------hhHHHH
Q 020640 196 KARAV-RDGGVSVILKKIM-DG-----VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTC------DRNKEN 262 (323)
Q Consensus 196 ~~~i~-~~g~v~~Lv~ll~-~~-----~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~------~~~~~~ 262 (323)
...++ +.|.++.+++.+. .+ ++....-.++..||.++++.+.+.+.+.++.+++++.+.+. .+.-..
T Consensus 143 ~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~ 222 (379)
T PF06025_consen 143 SFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASN 222 (379)
T ss_pred hhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHH
Confidence 66655 5699999999888 54 33444457788899999999999999999999999985321 123334
Q ss_pred HHHHHHHhcccChHh
Q 020640 263 CIAILHTICLSDRTK 277 (323)
Q Consensus 263 a~~~L~~L~~~~~~~ 277 (323)
--..+-.|.++.|..
T Consensus 223 lG~~~DEL~RH~p~L 237 (379)
T PF06025_consen 223 LGNSFDELMRHHPSL 237 (379)
T ss_pred HHHHHHHHHccCHHH
Confidence 556677888888764
No 159
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=94.95 E-value=0.52 Score=38.82 Aligned_cols=110 Identities=18% Similarity=0.232 Sum_probs=75.9
Q ss_pred chHHHHHHhhcCchHHHHHHHHHHHh-cCH-HHHHHHHhcCCHHHHHHHHhcc--------CChhHHHHHHHHHHHhccc
Q 020640 204 GVSVILKKIMDGVHVDELLAILAMLS-TNH-RAVEEIGDLGGVSCMLRIIRES--------TCDRNKENCIAILHTICLS 273 (323)
Q Consensus 204 ~v~~Lv~ll~~~~~~~~a~~~L~~l~-~~~-~~~~~i~~~g~i~~Lv~ll~~~--------~~~~~~~~a~~~L~~L~~~ 273 (323)
....+++.+.++......+.-|.-.- ..+ .=.+.|++.||+..|+.+|..- ........++.++..+...
T Consensus 67 ~p~~~i~~L~~~~~~~~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~ 146 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTSKILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNT 146 (187)
T ss_dssp HHHHHHHHHTTT--HHHHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHccCccHHHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHcc
Confidence 34456666666543333333333222 222 4456678889999999888651 1235677899999999988
Q ss_pred ChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 020640 274 DRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK 314 (323)
Q Consensus 274 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~ 314 (323)
..+ +..++...+++..|...+.+.+..++..|..+|..+|
T Consensus 147 ~~G-~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 147 KYG-LEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHH-HHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 866 6788889999999999999999999999999998876
No 160
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=4.4 Score=41.79 Aligned_cols=238 Identities=15% Similarity=0.127 Sum_probs=134.1
Q ss_pred hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640 31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 109 (323)
Q Consensus 31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~ 109 (323)
+++..|++.++ .|..++=.|+..+..++...| ..+.+ .+|...++++.. .+++..-..|+-+|..|+..
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~~Lad--~vi~svid~~~p-----~e~~~aWHgacLaLAELA~r 410 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---PELAD--QVIGSVIDLFNP-----AEDDSAWHGACLALAELALR 410 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc---HHHHH--HHHHHHHHhcCc-----CCchhHHHHHHHHHHHHHhc
Confidence 56666666665 567788899999999998777 34444 467778886553 33566777899999999864
Q ss_pred cchhhhhhccCCcHHHHHHHHh--------cCCHHHHHHHHHHHHHhcCCCCc--hhhhhccCChHHHH-HHhhhcCHhH
Q 020640 110 DNNKKLVAETPMVIPLLMDALR--------SGTIETRSNAAAALFTLSALDSN--KEVIGKSGALKPLI-DLLDEGHQSA 178 (323)
Q Consensus 110 ~~~~~~i~~~~g~i~~Lv~ll~--------~~~~~~~~~a~~~L~~L~~~~~~--~~~i~~~g~i~~Lv-~lL~~~~~~~ 178 (323)
---....+. .++|.++.-|. +....++..|+.++|.++..-+. .+.+... ..+.|+ ..+-+.+..+
T Consensus 411 GlLlps~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~-L~s~LL~~AlFDrevnc 487 (1133)
T KOG1943|consen 411 GLLLPSLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQS-LASALLIVALFDREVNC 487 (1133)
T ss_pred CCcchHHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHH-HHHHHHHHHhcCchhhH
Confidence 433333333 25666666552 12467888999999999743221 1222211 222222 2334456778
Q ss_pred HHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC-----chHHHHHHHHHHHhcCHHHHHHHHhc-CCHHHHHHHHh
Q 020640 179 MKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG-----VHVDELLAILAMLSTNHRAVEEIGDL-GGVSCMLRIIR 252 (323)
Q Consensus 179 ~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~-----~~~~~a~~~L~~l~~~~~~~~~i~~~-g~i~~Lv~ll~ 252 (323)
+..|..|+...... .|-.|.=+.++..- ..+.+|-. +....+.+. |....+++.+-
T Consensus 488 RRAAsAAlqE~VGR---------~~n~p~Gi~Lis~~dy~sV~~rsNcy~---------~l~~~ia~~~~y~~~~f~~L~ 549 (1133)
T KOG1943|consen 488 RRAASAALQENVGR---------QGNFPHGISLISTIDYFSVTNRSNCYL---------DLCVSIAEFSGYREPVFNHLL 549 (1133)
T ss_pred hHHHHHHHHHHhcc---------CCCCCCchhhhhhcchhhhhhhhhHHH---------HHhHHHHhhhhHHHHHHHHHH
Confidence 88888888655332 22222222222211 12222222 222222221 33333333222
Q ss_pred c---cC-ChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHH
Q 020640 253 E---ST-CDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKR 304 (323)
Q Consensus 253 ~---~~-~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~ 304 (323)
. .+ +..+++.++.+|..|+...++. + .....++|+.-..+.+...+.
T Consensus 550 t~Kv~HWd~~irelaa~aL~~Ls~~~pk~---~--a~~~L~~lld~~ls~~~~~r~ 600 (1133)
T KOG1943|consen 550 TKKVCHWDVKIRELAAYALHKLSLTEPKY---L--ADYVLPPLLDSTLSKDASMRH 600 (1133)
T ss_pred hcccccccHHHHHHHHHHHHHHHHhhHHh---h--cccchhhhhhhhcCCChHHhh
Confidence 1 12 3778999999999988887652 2 235666666665555544443
No 161
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.89 E-value=2.7 Score=39.65 Aligned_cols=240 Identities=12% Similarity=0.007 Sum_probs=133.7
Q ss_pred cCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccc-hhhhhhccCCcHHHHHHHHhc-CCHHHHHHHHHHHHHhc
Q 020640 72 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN-NKKLVAETPMVIPLLMDALRS-GTIETRSNAAAALFTLS 149 (323)
Q Consensus 72 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~g~i~~Lv~ll~~-~~~~~~~~a~~~L~~L~ 149 (323)
.|.+..++..|....- +++..++..|++.|.|.+.... ........ .+..++.-|.+ .+.+++-.++.+|..+.
T Consensus 253 ~~lL~s~~~~la~ka~--dp~a~~r~~a~r~L~~~as~~P~kv~th~~~--~ldaii~gL~D~~~~~V~leam~~Lt~v~ 328 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKAT--DPSAKSRGMACRGLGNTASGAPDKVRTHKTT--QLDAIIRGLYDDLNEEVQLEAMKCLTMVL 328 (533)
T ss_pred cccHHHHHHHHHHhcc--CchhHHHHHHHHHHHHHhccCcHHHHHhHHH--HHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 5555555544432211 5677899999999999987733 33333222 35555555544 46888888888888876
Q ss_pred CCCCchhhhhc-cCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCch--hHHHHhh--CchHHHHHHhhcCch-HHHHHH
Q 020640 150 ALDSNKEVIGK-SGALKPLIDLLDEGHQSAMKDVASAIFNLCITHEN--KARAVRD--GGVSVILKKIMDGVH-VDELLA 223 (323)
Q Consensus 150 ~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~--~~~i~~~--g~v~~Lv~ll~~~~~-~~~a~~ 223 (323)
..-.+....-- ..+.-.+..+..+.+++++..+..+...|+..... +..+.+. +...+++-.|.+..+ ...||+
T Consensus 329 ~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr 408 (533)
T KOG2032|consen 329 EKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACR 408 (533)
T ss_pred HhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHH
Confidence 43332221111 23445666677888899999999888888765533 3333432 334445555555533 556777
Q ss_pred HHHHHhcCHHHHHHH---Hh---cC------------------CHHHHHHHHhc-------cCChhHHHHHHHHHHHhcc
Q 020640 224 ILAMLSTNHRAVEEI---GD---LG------------------GVSCMLRIIRE-------STCDRNKENCIAILHTICL 272 (323)
Q Consensus 224 ~L~~l~~~~~~~~~i---~~---~g------------------~i~~Lv~ll~~-------~~~~~~~~~a~~~L~~L~~ 272 (323)
.....|.-.-.+++. .+ .+ ..+.+..++.+ ++.+.+++.+...-.+...
T Consensus 409 ~~~~~c~p~l~rke~~~~~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd 488 (533)
T KOG2032|consen 409 SELRTCYPNLVRKELYHLFQESLDTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVD 488 (533)
T ss_pred HHHHhcCchhHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHH
Confidence 666666532222221 11 01 11111111111 1224455555554444444
Q ss_pred cChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640 273 SDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 315 (323)
Q Consensus 273 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 315 (323)
+-......-.........|..+.+..-+++++.|..++..+.+
T Consensus 489 ~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 489 SLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 3333223333334456677777788899999999999887764
No 162
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=94.86 E-value=0.23 Score=34.28 Aligned_cols=64 Identities=17% Similarity=0.132 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC---chHHHHHHHHHHHhcCHHHHHHHHhcC
Q 020640 179 MKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHRAVEEIGDLG 242 (323)
Q Consensus 179 ~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~~~~~~~i~~~g 242 (323)
.+.+++++.+++..+.....+.+.+.++.++++.... .+|-.|..+|.-++...++.+.+-+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 5679999999999888777777779999999998865 679999999999999999999887765
No 163
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.82 E-value=0.88 Score=37.33 Aligned_cols=93 Identities=22% Similarity=0.200 Sum_probs=71.4
Q ss_pred CchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCc
Q 020640 43 TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMV 122 (323)
Q Consensus 43 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~ 122 (323)
++.+|.+++.++..++..-+. +.+ ..++.+...|+ ++++.++..|+.+|..|-..+--+. .|..
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~----~ve--~~~~~l~~~L~------D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l 64 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN----LVE--PYLPNLYKCLR------DEDPLVRKTALLVLSHLILEDMIKV----KGQL 64 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH----HHH--hHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHcCceee----hhhh
Confidence 467899999999999975443 333 46788999999 8899999999999999865432111 1222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 020640 123 IPLLMDALRSGTIETRSNAAAALFTLSAL 151 (323)
Q Consensus 123 i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~ 151 (323)
+..++.++.+++++++..|...+..+...
T Consensus 65 ~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 65 FSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 36677888999999999999999999765
No 164
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=94.61 E-value=0.21 Score=40.21 Aligned_cols=146 Identities=16% Similarity=0.144 Sum_probs=93.8
Q ss_pred CCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-
Q 020640 73 DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL- 151 (323)
Q Consensus 73 g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~- 151 (323)
..++.++..|... ...++++..++-++..+- +..+....+. +-+.+-..+..++.+....++.++..|-..
T Consensus 3 ~~l~~lL~~L~~~----~~~~~~r~~a~v~l~k~l--~~~~~~~~~~--~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~ 74 (157)
T PF11701_consen 3 DELDTLLTSLDML----RQPEEVRSHALVILSKLL--DAAREEFKEK--ISDFIESLLDEGEMDSLIIAFSALTALFPGP 74 (157)
T ss_dssp CCCCHHHHHHHCT----TTSCCHHHHHHHHHHHHH--HHHHHHHHHH--HHHHHHHHHCCHHCCHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHhccc----CCCHhHHHHHHHHHHHHH--HHhHHHHHHH--HHHHHHHHHccccchhHHHHHHHHHHHhCCC
Confidence 3455566666521 245678888888887762 3344444432 344455555555555677778888877533
Q ss_pred CCchhhh-hccCChHHHHHHhh--hcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC---c-hHHHHHHH
Q 020640 152 DSNKEVI-GKSGALKPLIDLLD--EGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG---V-HVDELLAI 224 (323)
Q Consensus 152 ~~~~~~i-~~~g~i~~Lv~lL~--~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~---~-~~~~a~~~ 224 (323)
++....+ ...|.++.++.++. .++..+...++.+|..=|.+...|..+.+ .+++.|-++++.+ . ++..|+-.
T Consensus 75 ~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~-~~~~~L~~~~~~~~~~~~ir~~A~v~ 153 (157)
T PF11701_consen 75 PDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK-NYVSWLKELYKNSKDDSEIRVLAAVG 153 (157)
T ss_dssp HHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH-HCHHHHHHHTTTCC-HH-CHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH-HHHHHHHHHHccccchHHHHHHHHHH
Confidence 3444444 45899999999999 67888999999998775554444444554 4899999999644 2 66667666
Q ss_pred HHH
Q 020640 225 LAM 227 (323)
Q Consensus 225 L~~ 227 (323)
|+.
T Consensus 154 L~K 156 (157)
T PF11701_consen 154 LCK 156 (157)
T ss_dssp HHH
T ss_pred Hhc
Confidence 653
No 165
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=94.60 E-value=5.5 Score=40.40 Aligned_cols=155 Identities=15% Similarity=0.100 Sum_probs=110.1
Q ss_pred hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640 31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 109 (323)
Q Consensus 31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~ 109 (323)
+.+.-|+.... .+.++-.--..+|...++-+++...... .-..|.++.+...+ ++||.+...+-.++..++..
T Consensus 530 ~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~--skI~P~~i~lF~k~----s~DP~V~~~~qd~f~el~q~ 603 (1005)
T KOG2274|consen 530 MILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASME--SKICPLTINLFLKY----SEDPQVASLAQDLFEELLQI 603 (1005)
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhh--cchhHHHHHHHHHh----cCCchHHHHHHHHHHHHHHH
Confidence 45555555554 3345555566777888877776543333 45777778777666 77899999888888899887
Q ss_pred cchhhhhhccCCcHHHHHHHHhcCC----HHHHHHHHHHHHHhcCC-CCchhhhhccCChHHHHHH-hhhcCHhHHHHHH
Q 020640 110 DNNKKLVAETPMVIPLLMDALRSGT----IETRSNAAAALFTLSAL-DSNKEVIGKSGALKPLIDL-LDEGHQSAMKDVA 183 (323)
Q Consensus 110 ~~~~~~i~~~~g~i~~Lv~ll~~~~----~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~l-L~~~~~~~~~~al 183 (323)
.++...+.+. .+|.++..+..+. ......++.+|..+-.+ ++.-....-+-+.|++.+. +.+++..+..++-
T Consensus 604 ~~~~g~m~e~--~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~ 681 (1005)
T KOG2274|consen 604 AANYGPMQER--LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNAT 681 (1005)
T ss_pred HHhhcchHHH--HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHH
Confidence 7788777774 6999999998764 66677788888866543 2333343445578888886 6678888999999
Q ss_pred HHHHHhccCC
Q 020640 184 SAIFNLCITH 193 (323)
Q Consensus 184 ~aL~~L~~~~ 193 (323)
.+|+.+-..+
T Consensus 682 EcLra~Is~~ 691 (1005)
T KOG2274|consen 682 ECLRALISVT 691 (1005)
T ss_pred HHHHHHHhcC
Confidence 9998886554
No 166
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=94.59 E-value=4.7 Score=38.96 Aligned_cols=170 Identities=16% Similarity=0.145 Sum_probs=91.7
Q ss_pred CCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHH
Q 020640 90 GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLID 169 (323)
Q Consensus 90 ~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ 169 (323)
+....+.-.++.++..++... -...+++. .+..|-.+|++.....+-.|.++|..|++..+.+..... +.+=.
T Consensus 275 ~k~emV~lE~Ar~v~~~~~~n-v~~~~~~~--~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN----~evEs 347 (898)
T COG5240 275 DKFEMVFLEAARAVCALSEEN-VGSQFVDQ--TVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCN----KEVES 347 (898)
T ss_pred CcchhhhHHHHHHHHHHHHhc-cCHHHHHH--HHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecC----hhHHH
Confidence 445677888888888776543 13334432 466777888888999999999999999976544433322 22333
Q ss_pred HhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcCchHHHHHHHHHHHhc-CHHHHH--------HHHh
Q 020640 170 LLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLST-NHRAVE--------EIGD 240 (323)
Q Consensus 170 lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~l~~-~~~~~~--------~i~~ 240 (323)
++.+.+..+...|+.+|.. +..+++..+++. .++..+.=++++ .+.-+..+++.||. .|.-+. .+.+
T Consensus 348 LIsd~Nr~IstyAITtLLK-TGt~e~idrLv~--~I~sfvhD~SD~-FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~ 423 (898)
T COG5240 348 LISDENRTISTYAITTLLK-TGTEETIDRLVN--LIPSFVHDMSDG-FKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQ 423 (898)
T ss_pred HhhcccccchHHHHHHHHH-cCchhhHHHHHH--HHHHHHHhhccC-ceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHh
Confidence 4455555666666665532 333344444443 344444444443 22223333333333 232222 1234
Q ss_pred cCC-------HHHHHHHHhccCChhHHHHHHHHHHHhcc
Q 020640 241 LGG-------VSCMLRIIRESTCDRNKENCIAILHTICL 272 (323)
Q Consensus 241 ~g~-------i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~ 272 (323)
+|+ +..+.++++. . +..++.|+..|+..-.
T Consensus 424 eGg~eFK~~~Vdaisd~~~~-~-p~skEraLe~LC~fIE 460 (898)
T COG5240 424 EGGLEFKKYMVDAISDAMEN-D-PDSKERALEVLCTFIE 460 (898)
T ss_pred cccchHHHHHHHHHHHHHhh-C-chHHHHHHHHHHHHHh
Confidence 442 4445555552 2 5566666665555443
No 167
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=94.58 E-value=0.55 Score=40.60 Aligned_cols=147 Identities=22% Similarity=0.243 Sum_probs=97.3
Q ss_pred HHHHHcCCCCCCCCCCCCccccchhhhhHHHHHHHHhc-CC--chhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHH
Q 020640 4 QWCRSQGIELPNSVQYINEEGITEADRDHFLSLLKKMS-AT--LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLS 80 (323)
Q Consensus 4 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lv~~l~-~~--~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~ 80 (323)
.|. +++.+.+.+.++.+-++..|.....+..+-..|. .+ ...|..|...|+|.-. + ..|..|++
T Consensus 128 e~~-~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--E----------eaI~al~~ 194 (289)
T KOG0567|consen 128 EWK-DIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--E----------EAINALID 194 (289)
T ss_pred HHh-hccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--H----------HHHHHHHH
Confidence 573 3444444455555555556655566777766663 22 3356777777777652 1 23555666
Q ss_pred hhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhc--CCHHHHHHHHHHHHHhcCCCCchhhh
Q 020640 81 PLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRS--GTIETRSNAAAALFTLSALDSNKEVI 158 (323)
Q Consensus 81 lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~--~~~~~~~~a~~~L~~L~~~~~~~~~i 158 (323)
-|. .++.-++..++-++..|-. ...++.|.+.|.. +++-++-.|+.+|..++..+
T Consensus 195 ~l~------~~SalfrhEvAfVfGQl~s-----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~------ 251 (289)
T KOG0567|consen 195 GLA------DDSALFRHEVAFVFGQLQS-----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADED------ 251 (289)
T ss_pred hcc------cchHHHHHHHHHHHhhccc-----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHH------
Confidence 666 5567788888888877632 3358888888864 47788888999988876533
Q ss_pred hccCChHHHHHHhhhcCHhHHHHHHHHHHHhc
Q 020640 159 GKSGALKPLIDLLDEGHQSAMKDVASAIFNLC 190 (323)
Q Consensus 159 ~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~ 190 (323)
+++.|.+.+.++.+-+++.|.-+|-.+-
T Consensus 252 ----~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 252 ----CVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred ----HHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 6888888888888888888777775543
No 168
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.34 E-value=0.066 Score=30.11 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=25.0
Q ss_pred hHHHHHHhhhcCHhHHHHHHHHHHHhcc
Q 020640 164 LKPLIDLLDEGHQSAMKDVASAIFNLCI 191 (323)
Q Consensus 164 i~~Lv~lL~~~~~~~~~~al~aL~~L~~ 191 (323)
+|.+++++.+++++++..|+.+|..++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999865
No 169
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.33 E-value=2.4 Score=39.88 Aligned_cols=146 Identities=14% Similarity=0.023 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHhcC-CCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccC-Cc--------h-----hHHH
Q 020640 135 IETRSNAAAALFTLSA-LDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCIT-HE--------N-----KARA 199 (323)
Q Consensus 135 ~~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~-~~--------~-----~~~i 199 (323)
+...+..+|+...|.. +++.. ...+..|++++.+ +.+...+++++.-|..+ ++ + |+++
T Consensus 248 ~~~~~~~~Wi~KaLv~R~~~~~-----~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~ 320 (415)
T PF12460_consen 248 PQALEILIWITKALVMRGHPLA-----TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRF 320 (415)
T ss_pred HHHHHHHHHHHHHHHHcCCchH-----HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHH
Confidence 3444455555555542 22111 1245667777766 56777888888877666 22 1 2222
Q ss_pred HhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHhc--CCHHHHHHHHhccCChhHHHHHHHHHHHhcccC
Q 020640 200 VRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDL--GGVSCMLRIIRESTCDRNKENCIAILHTICLSD 274 (323)
Q Consensus 200 ~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~--g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~ 274 (323)
.. -.+|.|++..++. ..+...+.+|.++..+ | +..+..+ ..+|-|++-|...+ ..++..+..+|..+....
T Consensus 321 F~-~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP--~~vl~~~l~~LlPLLlqsL~~~~-~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 321 FT-QVLPKLLEGFKEADDEIKSNYLTALSHLLKNVP--KSVLLPELPTLLPLLLQSLSLPD-ADVLLSSLETLKMILEEA 396 (415)
T ss_pred HH-HHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCC--HHHHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHcC
Confidence 22 2566777766654 4688889999999885 4 2222222 46888888887554 789999999999999988
Q ss_pred hHhHHHHHhhcccHHHHHH
Q 020640 275 RTKWKAMREEESTHGTISK 293 (323)
Q Consensus 275 ~~~~~~~~~~~~~i~~L~~ 293 (323)
++...+=+ ...++.|++
T Consensus 397 ~~~i~~hl--~sLI~~LL~ 413 (415)
T PF12460_consen 397 PELISEHL--SSLIPRLLK 413 (415)
T ss_pred HHHHHHHH--HHHHHHHHh
Confidence 65443322 245555544
No 170
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=94.26 E-value=0.45 Score=45.94 Aligned_cols=132 Identities=16% Similarity=0.256 Sum_probs=83.6
Q ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcccc
Q 020640 31 DHFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD 110 (323)
Q Consensus 31 ~~i~~Lv~~l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~ 110 (323)
.....++...+++...+.-|...|..+.++-|+.+ ..++..+++++. +++..++..|...|-.++.+.
T Consensus 23 ~~y~~il~~~kg~~k~K~Laaq~I~kffk~FP~l~------~~Ai~a~~DLcE------Ded~~iR~~aik~lp~~ck~~ 90 (556)
T PF05918_consen 23 EDYKEILDGVKGSPKEKRLAAQFIPKFFKHFPDLQ------EEAINAQLDLCE------DEDVQIRKQAIKGLPQLCKDN 90 (556)
T ss_dssp HHHHHHHHGGGS-HHHHHHHHHHHHHHHCC-GGGH------HHHHHHHHHHHT-------SSHHHHHHHHHHGGGG--T-
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhH------HHHHHHHHHHHh------cccHHHHHHHHHhHHHHHHhH
Confidence 34555556556778888899999999998888865 345667999999 889999999999999998763
Q ss_pred -chhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhh---hcCHhHHHHHHHHH
Q 020640 111 -NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLD---EGHQSAMKDVASAI 186 (323)
Q Consensus 111 -~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~---~~~~~~~~~al~aL 186 (323)
+.... +...|+.+|.++++.-...+-.+|..|-..+. .+.+..++.-+. +++..+++.++..|
T Consensus 91 ~~~v~k------vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl 157 (556)
T PF05918_consen 91 PEHVSK------VADVLVQLLQTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFL 157 (556)
T ss_dssp -T-HHH------HHHHHHHHTT---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHH
T ss_pred HHHHhH------HHHHHHHHHhcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHH
Confidence 23332 35668889988877666666666666643221 233444554444 45566666666665
Q ss_pred H
Q 020640 187 F 187 (323)
Q Consensus 187 ~ 187 (323)
.
T Consensus 158 ~ 158 (556)
T PF05918_consen 158 R 158 (556)
T ss_dssp H
T ss_pred H
Confidence 3
No 171
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=94.25 E-value=4.6 Score=37.50 Aligned_cols=96 Identities=15% Similarity=0.229 Sum_probs=74.0
Q ss_pred HHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHh-cC---CHHHHHHHHHHHHHhcC
Q 020640 75 IPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALR-SG---TIETRSNAAAALFTLSA 150 (323)
Q Consensus 75 i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~-~~---~~~~~~~a~~~L~~L~~ 150 (323)
...|..+++... .--+.+-..|+.++..+-.++...-.+....|+++.++..+. .+ +.++....-.++..||.
T Consensus 108 ~~sL~~Il~n~~---~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL 184 (379)
T PF06025_consen 108 LSSLKHILENPE---VFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL 184 (379)
T ss_pred HHHHHHHHhCcc---ccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc
Confidence 444555555321 224678888999999887777755555555679999999887 43 67888888899999999
Q ss_pred CCCchhhhhccCChHHHHHHhhh
Q 020640 151 LDSNKEVIGKSGALKPLIDLLDE 173 (323)
Q Consensus 151 ~~~~~~~i~~~g~i~~Lv~lL~~ 173 (323)
+....+.+.+.+.++.+++++.+
T Consensus 185 N~~Gl~~~~~~~~l~~~f~if~s 207 (379)
T PF06025_consen 185 NNRGLEKVKSSNPLDKLFEIFTS 207 (379)
T ss_pred CHHHHHHHHhcChHHHHHHHhCC
Confidence 99999999999999999998875
No 172
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.25 E-value=2.1 Score=40.27 Aligned_cols=192 Identities=17% Similarity=0.110 Sum_probs=110.2
Q ss_pred hhhhHHHHHHHHhc--CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHH
Q 020640 28 ADRDHFLSLLKKMS--ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN 105 (323)
Q Consensus 28 ~~~~~i~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ 105 (323)
.....+..++.... +++..+..+...+.-+..+-+... ..+ ..++.+...+. . ..++..+..+..++.-
T Consensus 186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~l~--~~l~~~~~~~~-~----~~~~~~~~~~~~~~~W 256 (415)
T PF12460_consen 186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD--DLD--EFLDSLLQSIS-S----SEDSELRPQALEILIW 256 (415)
T ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh--hHH--HHHHHHHhhhc-c----cCCcchhHHHHHHHHH
Confidence 44457777777773 446778888888888885522110 111 22333333331 0 2333444444444433
Q ss_pred hccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CC--------c-----hhhhhccCChHHHHHHh
Q 020640 106 LSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL-DS--------N-----KEVIGKSGALKPLIDLL 171 (323)
Q Consensus 106 ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~-~~--------~-----~~~i~~~g~i~~Lv~lL 171 (323)
+++.---|..-.. ...+..|+.++.+ +++...+++.+.-|..+ ++ + |.++. ...+|.|++..
T Consensus 257 i~KaLv~R~~~~~-~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F-~~~~p~L~~~~ 332 (415)
T PF12460_consen 257 ITKALVMRGHPLA-TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF-TQVLPKLLEGF 332 (415)
T ss_pred HHHHHHHcCCchH-HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH-HHHHHHHHHHH
Confidence 3221111110001 1134556666666 66788888888888765 22 1 12222 23567777777
Q ss_pred hhcCHhHHHHHHHHHHHhccCCchhHHHHhh-CchHHHHHHhhcC--chHHHHHHHHHHHhcCH
Q 020640 172 DEGHQSAMKDVASAIFNLCITHENKARAVRD-GGVSVILKKIMDG--VHVDELLAILAMLSTNH 232 (323)
Q Consensus 172 ~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~-g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~ 232 (323)
+..+...+...+.+|.++..+-+...-.-+. ..+|.|++-|+-+ +++..++.+|..+....
T Consensus 333 ~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 333 KEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred hhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 7766668888899999998866633333332 5778888888754 57888999988888754
No 173
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=94.08 E-value=0.08 Score=49.35 Aligned_cols=181 Identities=9% Similarity=0.018 Sum_probs=105.2
Q ss_pred CHHHHHHHHHHHHHhcCCCCchhhhhc-cCChHHHHHHhhhcCHhHHHHHHHHHHHhccC----CchhHHHH-hh-C-ch
Q 020640 134 TIETRSNAAAALFTLSALDSNKEVIGK-SGALKPLIDLLDEGHQSAMKDVASAIFNLCIT----HENKARAV-RD-G-GV 205 (323)
Q Consensus 134 ~~~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~----~~~~~~i~-~~-g-~v 205 (323)
+.-++..|.+++.-+..++..+....- .++...++..+.+..-..+..+.+++.|++.. -++..... +. | .+
T Consensus 404 ~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll 483 (728)
T KOG4535|consen 404 NRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLL 483 (728)
T ss_pred HHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHH
Confidence 334555666666666677765554433 45566666667676777889999999998541 12211111 11 1 12
Q ss_pred HHHHHHhh----c-CchHHHHHHHHHHHhcCH----HHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChH
Q 020640 206 SVILKKIM----D-GVHVDELLAILAMLSTNH----RAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT 276 (323)
Q Consensus 206 ~~Lv~ll~----~-~~~~~~a~~~L~~l~~~~----~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~ 276 (323)
..+...-. + ..++.+++++|.|+...- +..-.....|.+..+..-....+..++|=++|-++.||..+..-
T Consensus 484 ~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~ 563 (728)
T KOG4535|consen 484 LKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPAL 563 (728)
T ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccc
Confidence 22222211 1 168899999999998731 11112222344555553333334588999999999999998742
Q ss_pred hHHHHHhhcccHHHHHHHhhcC-CHHHHHHHHHHHHHHh
Q 020640 277 KWKAMREEESTHGTISKLAQDG-TARAKRKATGILERLK 314 (323)
Q Consensus 277 ~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~A~~~L~~l~ 314 (323)
....+-.-....+.|..++.+- +=.++-+|+.+|..-.
T Consensus 564 ~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~ 602 (728)
T KOG4535|consen 564 PLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPG 602 (728)
T ss_pred cccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCC
Confidence 2222222334556666666543 7777888888876543
No 174
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.06 E-value=0.12 Score=29.01 Aligned_cols=30 Identities=13% Similarity=0.176 Sum_probs=26.0
Q ss_pred cHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640 287 THGTISKLAQDGTARAKRKATGILERLKRT 316 (323)
Q Consensus 287 ~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 316 (323)
.++.+++++.+++++++..|+..|..++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 368899999999999999999999998864
No 175
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.04 E-value=0.25 Score=47.88 Aligned_cols=138 Identities=16% Similarity=0.173 Sum_probs=93.5
Q ss_pred CCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Q 020640 73 DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD 152 (323)
Q Consensus 73 g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~ 152 (323)
|+.-.++.-|. ++.-+++..|+..++.|+.. +..+... .+..|+.++.++.++++..|..+|..++.+-
T Consensus 373 GACGA~VhGlE------DEf~EVR~AAV~Sl~~La~s---sP~FA~~--aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l 441 (823)
T KOG2259|consen 373 GACGALVHGLE------DEFYEVRRAAVASLCSLATS---SPGFAVR--ALDFLVDMFNDEIEVVRLKAIFALTMISVHL 441 (823)
T ss_pred cccceeeeech------HHHHHHHHHHHHHHHHHHcC---CCCcHHH--HHHHHHHHhccHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555 66789999999999999864 3444443 5889999999999999999999999998762
Q ss_pred CchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhc-CchHHHHHHHHHHHhc
Q 020640 153 SNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMD-GVHVDELLAILAMLST 230 (323)
Q Consensus 153 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~-~~~~~~a~~~L~~l~~ 230 (323)
. .+..-++.+++.|.+.+.++++..-..|.+.=..+-++..+. +..|+.-|.. +.-+....+++..+..
T Consensus 442 ~-----i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~----v~~lL~~L~kyPqDrd~i~~cm~~iGq 511 (823)
T KOG2259|consen 442 A-----IREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDMC----VAHLLKNLGKYPQDRDEILRCMGRIGQ 511 (823)
T ss_pred e-----ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHH----HHHHHHHhhhCCCCcHHHHHHHHHHhc
Confidence 2 334468888999999999999988888876544444444442 2223333322 2334455555555555
No 176
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.00 E-value=1.9 Score=43.29 Aligned_cols=197 Identities=19% Similarity=0.109 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHH--
Q 020640 47 QTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIP-- 124 (323)
Q Consensus 47 ~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~-- 124 (323)
+..+. +|.+.+..++++++.+.+ .||+..+.+.++.. ...+.+..++..+.|++...+.+....... .+.
T Consensus 489 ~~~~~-~l~~~t~~~~~~C~~~l~-~~g~~~~~~~l~~f-----~~~~~~~~il~~l~n~~~~~~~~~~~~~~~-~~~~~ 560 (699)
T KOG3665|consen 489 VLEFT-ALWNITDENPETCKEFLD-NGGMKLLFKCLESF-----DNEELHRKILGLLGNLAEVLELRELLMIFE-FIDFS 560 (699)
T ss_pred HHHHH-HHHhhhcCCHHHHHHHHh-cccHHHHHHHHhhc-----cchhHHHHHHHHHHHHHHHhhhhhhhhHHH-HHHHH
Confidence 44444 888999999999999999 99999999999863 467899999999999998776555444322 122
Q ss_pred HHHHHHhcCCH-HHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhC
Q 020640 125 LLMDALRSGTI-ETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDG 203 (323)
Q Consensus 125 ~Lv~ll~~~~~-~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g 203 (323)
.+-.++...+. +.-..++++|..+..+.+. -...+.-+..-+++.+ +. .........+....
T Consensus 561 ~f~~~~~~w~~~ersY~~~siLa~ll~~~~~---~~~~~~r~~~~~~l~e-----------~i---~~~~~~~~~~~~~~ 623 (699)
T KOG3665|consen 561 VFKVLLNKWDSIERSYNAASILALLLSDSEK---TTECVFRNSVNELLVE-----------AI---SRWLTSEIRVINDR 623 (699)
T ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHhCCCc---CccccchHHHHHHHHH-----------Hh---hccCccceeehhhh
Confidence 23334444444 7888899999988765443 1112222222222111 11 11111111111111
Q ss_pred chHH-HHHHhh---cCchHHHHHHHHHHHhc-CHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHH
Q 020640 204 GVSV-ILKKIM---DGVHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILH 268 (323)
Q Consensus 204 ~v~~-Lv~ll~---~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~ 268 (323)
...+ +..++. .+..+-.|++++.++.. +++....+.+.|+++.+.+.-.......+++.+...+-
T Consensus 624 ~f~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 693 (699)
T KOG3665|consen 624 SFFPRILRILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIE 693 (699)
T ss_pred hcchhHHHHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhh
Confidence 2222 333443 34778889999999988 47777778888888888766653323445555555443
No 177
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.94 E-value=2.8 Score=42.14 Aligned_cols=223 Identities=13% Similarity=0.108 Sum_probs=128.2
Q ss_pred hHHHHHHHHhcC-CchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640 31 DHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 109 (323)
Q Consensus 31 ~~i~~Lv~~l~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~ 109 (323)
+..+.-+..+.+ .+.+|--|+..|+.+... ......+.. .+++....+.|+ ++|+-+--+|...+..|+.-
T Consensus 727 e~~qeai~sl~d~qvpik~~gL~~l~~l~e~-r~~~~~~~~-ekvl~i~ld~Lk------dedsyvyLnaI~gv~~Lcev 798 (982)
T KOG4653|consen 727 EPLQEAISSLHDDQVPIKGYGLQMLRHLIEK-RKKATLIQG-EKVLAIALDTLK------DEDSYVYLNAIRGVVSLCEV 798 (982)
T ss_pred HHHHHHHHHhcCCcccchHHHHHHHHHHHHh-cchhhhhhH-HHHHHHHHHHhc------ccCceeeHHHHHHHHHHHHh
Confidence 345566666654 477899999999999964 344455666 789999999999 77888888888866666542
Q ss_pred cchhhhhhccCCcHHHHHHH-HhcC---CHHHHHHHHHHHHHhcCC-CCchhhhhccCChHHHHHHhhhcCHhHHHHHHH
Q 020640 110 DNNKKLVAETPMVIPLLMDA-LRSG---TIETRSNAAAALFTLSAL-DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVAS 184 (323)
Q Consensus 110 ~~~~~~i~~~~g~i~~Lv~l-l~~~---~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~ 184 (323)
.. ..++|.+... .... .++.+...-.++.++..- .+-..... .-.+...+...++++...+..++.
T Consensus 799 -------y~-e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-~~Li~tfl~gvrepd~~~RaSS~a 869 (982)
T KOG4653|consen 799 -------YP-EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-AVLINTFLSGVREPDHEFRASSLA 869 (982)
T ss_pred -------cc-hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhcCCchHHHHHhHHH
Confidence 11 1245555552 2211 123333333555555321 11111111 112333444455567778999999
Q ss_pred HHHHhccCCchhHHHHhhCchHHHHHHhhcC---chHHHHHHHHHHHhcC-HHHHHHHH---hcCCHHHHHHHHhccCCh
Q 020640 185 AIFNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTN-HRAVEEIG---DLGGVSCMLRIIRESTCD 257 (323)
Q Consensus 185 aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~-~~~~~~i~---~~g~i~~Lv~ll~~~~~~ 257 (323)
.+++||.-...+..=.=..++..++.+.+.+ -++..|+-.+..+-.+ .+.--.|. .-+....+.+..+..+++
T Consensus 870 ~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd 949 (982)
T KOG4653|consen 870 NLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDD 949 (982)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 9999986443221111112445555555543 4688888888777663 21111121 224456666677655556
Q ss_pred hHHHHHHHHHHHh
Q 020640 258 RNKENCIAILHTI 270 (323)
Q Consensus 258 ~~~~~a~~~L~~L 270 (323)
.++.+|+.++-.+
T Consensus 950 ~~klhaql~leei 962 (982)
T KOG4653|consen 950 GLKLHAQLCLEEI 962 (982)
T ss_pred HHHHHHHHHHHHH
Confidence 6777777776654
No 178
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=93.88 E-value=1.7 Score=45.19 Aligned_cols=227 Identities=15% Similarity=0.131 Sum_probs=133.7
Q ss_pred hHHHHHHHHhc-CCchhHHHHHHHHHHHhcc----ChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHH
Q 020640 31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKR----MPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN 105 (323)
Q Consensus 31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~----~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ 105 (323)
.++|.+|.++. ...++|..|+.+|..+... .+.+...|.+ -..|.|-.++.. +....++..-+..|..
T Consensus 462 RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~e--YlfP~L~~l~~d-----~~~~~vRiayAsnla~ 534 (1431)
T KOG1240|consen 462 RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPE--YLFPHLNHLLND-----SSAQIVRIAYASNLAQ 534 (1431)
T ss_pred hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHh--hhhhhhHhhhcc-----CccceehhhHHhhHHH
Confidence 47788888886 4578899999888877632 2223334444 456777777762 1233444444444444
Q ss_pred hcc------------------ccc-h-----------hhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-Cc
Q 020640 106 LSI------------------HDN-N-----------KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD-SN 154 (323)
Q Consensus 106 ls~------------------~~~-~-----------~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~-~~ 154 (323)
||. ++. + ...+.. ++-.....+|..+.+-++..-+..|.-||.+- .-
T Consensus 535 LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~--~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ 612 (1431)
T KOG1240|consen 535 LAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHH--TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE 612 (1431)
T ss_pred HHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHH--HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc
Confidence 431 111 1 112221 12233445556666666666666777776321 10
Q ss_pred hhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCH
Q 020640 155 KEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNH 232 (323)
Q Consensus 155 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~ 232 (323)
+ .+.=+++.|+..|.+.+...+..=...|.-+|..-.- +-++++.+|.|.+-|.++ .+...|+++|.-|+...
T Consensus 613 k---sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~--rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ 687 (1431)
T KOG1240|consen 613 K---SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW--RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG 687 (1431)
T ss_pred c---cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee--eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc
Confidence 0 1123678888899888877776555555444432221 114556788888888887 57899999999998865
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhccc
Q 020640 233 RAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLS 273 (323)
Q Consensus 233 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~ 273 (323)
-.++..+. ..++...-+|-.. +..++..++..+......
T Consensus 688 ll~K~~v~-~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 688 LLRKPAVK-DILQDVLPLLCHP-NLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred ccchHHHH-HHHHhhhhheeCc-hHHHHHHHHHHHHHHHhh
Confidence 44443321 2344455556544 488999999999887654
No 179
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=93.76 E-value=5.3 Score=41.26 Aligned_cols=190 Identities=17% Similarity=0.107 Sum_probs=118.9
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhc-CHhHHHHHHHHHHHhccCCchhHHHH
Q 020640 122 VIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEG-HQSAMKDVASAIFNLCITHENKARAV 200 (323)
Q Consensus 122 ~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~al~aL~~L~~~~~~~~~i~ 200 (323)
+++.|...+++.+..+++.|++-+..++...+ ..+.+ .++...++++... +...-..++-+|+.|+...=-....+
T Consensus 342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l 418 (1133)
T KOG1943|consen 342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLL 418 (1133)
T ss_pred HHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHH
Confidence 67777788888899999999999999986554 22332 2566666655543 35566678888888877654333333
Q ss_pred hhCchHHHHHHhh---------cC-chHHHHHHHHHHHhcC--HH-HHHHHHhcCCHHHHH-HHHhccCChhHHHHHHHH
Q 020640 201 RDGGVSVILKKIM---------DG-VHVDELLAILAMLSTN--HR-AVEEIGDLGGVSCML-RIIRESTCDRNKENCIAI 266 (323)
Q Consensus 201 ~~g~v~~Lv~ll~---------~~-~~~~~a~~~L~~l~~~--~~-~~~~i~~~g~i~~Lv-~ll~~~~~~~~~~~a~~~ 266 (323)
+. ++|.++.-|. .| .+++.|+-+++.++.. +. .+. +++ ...+.|+ ..+.+.+ -.++++|..+
T Consensus 419 ~d-VvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l~-~L~s~LL~~AlFDre-vncRRAAsAA 494 (1133)
T KOG1943|consen 419 ED-VVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP-VLQ-SLASALLIVALFDRE-VNCRRAASAA 494 (1133)
T ss_pred HH-HHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH-HHH-HHHHHHHHHHhcCch-hhHhHHHHHH
Confidence 32 5566665553 22 6899999999999984 22 222 332 2223333 4444332 5678888888
Q ss_pred HHHhcccChHh-------------------------HHHHHhhcccHHHHHHH-----hhcCCHHHHHHHHHHHHHHhcc
Q 020640 267 LHTICLSDRTK-------------------------WKAMREEESTHGTISKL-----AQDGTARAKRKATGILERLKRT 316 (323)
Q Consensus 267 L~~L~~~~~~~-------------------------~~~~~~~~~~i~~L~~l-----l~~~~~~~~~~A~~~L~~l~~~ 316 (323)
+........+. ...+-...+....+++- +.+.++.+++-|++.|..|+..
T Consensus 495 lqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~ 574 (1133)
T KOG1943|consen 495 LQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLT 574 (1133)
T ss_pred HHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHh
Confidence 87776552210 11122234444444442 4556899999999999998765
Q ss_pred hh
Q 020640 317 VN 318 (323)
Q Consensus 317 ~~ 318 (323)
.+
T Consensus 575 ~p 576 (1133)
T KOG1943|consen 575 EP 576 (1133)
T ss_pred hH
Confidence 44
No 180
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.50 E-value=4 Score=41.12 Aligned_cols=212 Identities=14% Similarity=0.080 Sum_probs=122.7
Q ss_pred CCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHH
Q 020640 90 GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLID 169 (323)
Q Consensus 90 ~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ 169 (323)
++.+.++..|+..|..+.........+... +++...+..+++.+.-+--.|+..+..|+.- ....++|.|.+
T Consensus 738 d~qvpik~~gL~~l~~l~e~r~~~~~~~~e-kvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL~e 809 (982)
T KOG4653|consen 738 DDQVPIKGYGLQMLRHLIEKRKKATLIQGE-KVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDLSE 809 (982)
T ss_pred CCcccchHHHHHHHHHHHHhcchhhhhhHH-HHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHHHH
Confidence 455678888888888887655555555554 4888888999998888888888877777642 22456777777
Q ss_pred H-hhhc---CHhHHHHHHHHHHHhccCC-chhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCH--HHHHHHHh
Q 020640 170 L-LDEG---HQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNH--RAVEEIGD 240 (323)
Q Consensus 170 l-L~~~---~~~~~~~al~aL~~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~--~~~~~i~~ 240 (323)
. .... ..+.+...-.++.++...- +....-.+ -.+...+...+++ ..+..++.++.++|.-- ..-..+.
T Consensus 810 ~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~- 887 (982)
T KOG4653|consen 810 EYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH- 887 (982)
T ss_pred HHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH-
Confidence 3 3332 1233333335555543311 11111111 1223344444444 45888999999998732 1222333
Q ss_pred cCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhc--ccHHHHHHHh-hcCCHHHHHHHHHHHHH
Q 020640 241 LGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEE--STHGTISKLA-QDGTARAKRKATGILER 312 (323)
Q Consensus 241 ~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~--~~i~~L~~ll-~~~~~~~~~~A~~~L~~ 312 (323)
..+..++.+.+.+.+..++++|+..+..+-.+.....-++.+.. .....+.... .+.++.++..|...+..
T Consensus 888 -ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~lee 961 (982)
T KOG4653|consen 888 -EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEE 961 (982)
T ss_pred -HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 34677777777666688999999999998876643222332211 1222233333 33355556555555443
No 181
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.25 E-value=7.4 Score=41.81 Aligned_cols=234 Identities=13% Similarity=0.078 Sum_probs=120.7
Q ss_pred hHHHHHHHHh---cCCch--hHHHHHHHHHHHhccCh-hhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHH
Q 020640 31 DHFLSLLKKM---SATLP--DQTEAAKELRLLTKRMP-SFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLL 104 (323)
Q Consensus 31 ~~i~~Lv~~l---~~~~~--~~~~a~~~L~~l~~~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~ 104 (323)
-..+.||..| +.||+ +| .|..-|.+.-..+. ........ ...+.|+.-|. +....+++.++.+|.
T Consensus 994 p~l~kLIPrLyRY~yDP~~~Vq-~aM~sIW~~Li~D~k~~vd~y~n--eIl~eLL~~lt------~kewRVReasclAL~ 1064 (1702)
T KOG0915|consen 994 PYLKKLIPRLYRYQYDPDKKVQ-DAMTSIWNALITDSKKVVDEYLN--EILDELLVNLT------SKEWRVREASCLALA 1064 (1702)
T ss_pred hHHHHhhHHHhhhccCCcHHHH-HHHHHHHHHhccChHHHHHHHHH--HHHHHHHHhcc------chhHHHHHHHHHHHH
Confidence 3555666666 23444 44 35555555443332 22222222 34455555555 567889999999999
Q ss_pred HhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHH---HHHHHHHhcC---CCCc--hhhhhccCChHHHHH--Hhhhc
Q 020640 105 NLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSN---AAAALFTLSA---LDSN--KEVIGKSGALKPLID--LLDEG 174 (323)
Q Consensus 105 ~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~---a~~~L~~L~~---~~~~--~~~i~~~g~i~~Lv~--lL~~~ 174 (323)
-|-...+.-...-+.+.....+.+...+-.+.+++. ++++|..|+. +..+ +.+-.-..++|.|++ .+ ++
T Consensus 1065 dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim-s~ 1143 (1702)
T KOG0915|consen 1065 DLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM-SK 1143 (1702)
T ss_pred HHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc-cc
Confidence 887665532222111123444455544444555554 4555555541 1111 111111234455543 22 45
Q ss_pred CHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC-------------chHHHHHHHHH-HHhcC-H--HHHHH
Q 020640 175 HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG-------------VHVDELLAILA-MLSTN-H--RAVEE 237 (323)
Q Consensus 175 ~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~-------------~~~~~a~~~L~-~l~~~-~--~~~~~ 237 (323)
-.+++..++.++.-|+.+......---...++.|++..+.- +....++..++ +.+.+ | +.-..
T Consensus 1144 v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ 1223 (1702)
T KOG0915|consen 1144 VNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINK 1223 (1702)
T ss_pred hHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHH
Confidence 67899999999999987664311111113455555555421 12233443333 33333 1 11111
Q ss_pred H-------HhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccC
Q 020640 238 I-------GDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSD 274 (323)
Q Consensus 238 i-------~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~ 274 (323)
. +=+..+|.+.++++.+-.-..|..++..+..|+..-
T Consensus 1224 ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~ 1267 (1702)
T KOG0915|consen 1224 CINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRL 1267 (1702)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHh
Confidence 1 112368888888887655667778888777776653
No 182
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.20 E-value=6.1 Score=41.22 Aligned_cols=218 Identities=17% Similarity=0.166 Sum_probs=124.6
Q ss_pred CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcccc--chhhhhhcc
Q 020640 42 ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD--NNKKLVAET 119 (323)
Q Consensus 42 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~--~~~~~i~~~ 119 (323)
++..+|.++-..|..++.. +.......+ -+..+.+.|..... +.....+..++.+|..+-... +....+.+
T Consensus 666 ~~~~vQkK~yrlL~~l~~~-~s~~~~~~q---~i~~I~n~L~ds~q--s~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k- 738 (1176)
T KOG1248|consen 666 SSTKVQKKAYRLLEELSSS-PSGEGLVEQ---RIDDIFNSLLDSFQ--SSSSPAQASRLKCLKRLLKLLSAEHCDLIPK- 738 (1176)
T ss_pred ccHHHHHHHHHHHHHHhcC-CchhhHHHH---HHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHhccHHHHHHHHH-
Confidence 3577899999999999965 333222222 34445555542221 444556666777666553322 34444444
Q ss_pred CCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC----CCCchhhhhccCChHHHHHHhhhc--CHhHHHHHH--HHHHHhcc
Q 020640 120 PMVIPLLMDALRSGTIETRSNAAAALFTLSA----LDSNKEVIGKSGALKPLIDLLDEG--HQSAMKDVA--SAIFNLCI 191 (323)
Q Consensus 120 ~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~----~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~al--~aL~~L~~ 191 (323)
.++-++-.++..+...+..+..+|..+.. .+..... ..-.++..+..+..+ ..+....+. -++..+..
T Consensus 739 --~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~ 814 (1176)
T KOG1248|consen 739 --LIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ 814 (1176)
T ss_pred --HHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence 24444444477889999999999998872 1111111 112566666666654 333333333 23333221
Q ss_pred CCchhHHHHhhCchHH----HHHHhhcC--chHHHHHHHHHHHhc-CHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHH
Q 020640 192 THENKARAVRDGGVSV----ILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCI 264 (323)
Q Consensus 192 ~~~~~~~i~~~g~v~~----Lv~ll~~~--~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~ 264 (323)
. -..++..+.++. +..+|.++ .++..|++.+.-++. .|+........-+++.+..++++.. ..++.+.-
T Consensus 815 e---~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k-~~~r~Kvr 890 (1176)
T KOG1248|consen 815 E---FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHK-IKVRKKVR 890 (1176)
T ss_pred H---HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhh-HHHHHHHH
Confidence 1 111222233333 33444444 688999999988887 4655544444456888888888654 78888888
Q ss_pred HHHHHhcccC
Q 020640 265 AILHTICLSD 274 (323)
Q Consensus 265 ~~L~~L~~~~ 274 (323)
..|-.|....
T Consensus 891 ~LlekLirkf 900 (1176)
T KOG1248|consen 891 LLLEKLIRKF 900 (1176)
T ss_pred HHHHHHHHHh
Confidence 8888887744
No 183
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=92.91 E-value=3.7 Score=36.70 Aligned_cols=177 Identities=15% Similarity=0.149 Sum_probs=108.7
Q ss_pred CCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CC-Cch-------hhhhc
Q 020640 90 GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSA-LD-SNK-------EVIGK 160 (323)
Q Consensus 90 ~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~-~~-~~~-------~~i~~ 160 (323)
++++.+++.|+..|.-.+.-+. .+... .++.+...++.+++.++..|+.++..+.. +. +.- .....
T Consensus 38 ~~~~~vR~~al~cLGl~~Lld~---~~a~~--~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~ 112 (298)
T PF12719_consen 38 SSDPAVRELALKCLGLCCLLDK---ELAKE--HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDS 112 (298)
T ss_pred CCCHHHHHHHHHHHHHHHHhCh---HHHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchH
Confidence 6788999999999998876554 33332 36778888877899999999999999863 22 111 11223
Q ss_pred cCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC-----chHHHHH-HHHHHHhcCHHH
Q 020640 161 SGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG-----VHVDELL-AILAMLSTNHRA 234 (323)
Q Consensus 161 ~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~-----~~~~~a~-~~L~~l~~~~~~ 234 (323)
...+..+.+.+.+.+++++..++..+..|-..+.... ....+..|+-+.-++ .-..+++ ..+-..|.....
T Consensus 113 ~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~ 189 (298)
T PF12719_consen 113 KSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPE 189 (298)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHH
Confidence 5577788888888899999999999988865553222 112333344433332 1223343 344566665443
Q ss_pred HHHHHhcCCHHHHHHHHhccCC---hh--H-HHHHHHHHHHhcccC
Q 020640 235 VEEIGDLGGVSCMLRIIRESTC---DR--N-KENCIAILHTICLSD 274 (323)
Q Consensus 235 ~~~i~~~g~i~~Lv~ll~~~~~---~~--~-~~~a~~~L~~L~~~~ 274 (323)
.+..+....++.+-.+.+...+ +. + -...+..+..++...
T Consensus 190 ~Q~~l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~~~ 235 (298)
T PF12719_consen 190 NQERLAEAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTDPS 235 (298)
T ss_pred HHHHHHHHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCChh
Confidence 3455555667777777764321 11 1 334555555655543
No 184
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=92.77 E-value=0.2 Score=46.79 Aligned_cols=152 Identities=10% Similarity=0.078 Sum_probs=89.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcC--CC--Cc-hhhhhc-cC-ChHHHHHHhh---hcCHhHHHHHHHHHHHhccC
Q 020640 123 IPLLMDALRSGTIETRSNAAAALFTLSA--LD--SN-KEVIGK-SG-ALKPLIDLLD---EGHQSAMKDVASAIFNLCIT 192 (323)
Q Consensus 123 i~~Lv~ll~~~~~~~~~~a~~~L~~L~~--~~--~~-~~~i~~-~g-~i~~Lv~lL~---~~~~~~~~~al~aL~~L~~~ 192 (323)
...+...+.+..-..++.+++++.|++. .+ .+ +..--+ .| .+..++.... .++.+++.++.++|.|+...
T Consensus 435 a~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQv 514 (728)
T KOG4535|consen 435 ANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQF 514 (728)
T ss_pred HHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHH
Confidence 4455566666667788899999999852 11 12 111111 11 2233333322 24678899999999998653
Q ss_pred CchhH----HHHhhCchHHHHHHhh-cC--chHHHHHHHHHHHhcCHHHHHHH--HhcCCHHHHHHHHhccCChhHHHHH
Q 020640 193 HENKA----RAVRDGGVSVILKKIM-DG--VHVDELLAILAMLSTNHRAVEEI--GDLGGVSCMLRIIRESTCDRNKENC 263 (323)
Q Consensus 193 ~~~~~----~i~~~g~v~~Lv~ll~-~~--~~~~~a~~~L~~l~~~~~~~~~i--~~~g~i~~Lv~ll~~~~~~~~~~~a 263 (323)
-+... ..+..|.+..+..-.- .+ .++.++|.++.||-+++..+-+= +.-.+.+.|..++.+..+-+++.+|
T Consensus 515 lq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~A 594 (728)
T KOG4535|consen 515 LQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRA 594 (728)
T ss_pred HHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehh
Confidence 22111 1111222222222111 12 68999999999999987542221 1123578888999876678899999
Q ss_pred HHHHHHhcccC
Q 020640 264 IAILHTICLSD 274 (323)
Q Consensus 264 ~~~L~~L~~~~ 274 (323)
+.+|..-....
T Consensus 595 A~aL~vp~~re 605 (728)
T KOG4535|consen 595 AAALSVPGKRE 605 (728)
T ss_pred hhhhcCCCCcc
Confidence 99998765543
No 185
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.60 E-value=1.9 Score=43.56 Aligned_cols=121 Identities=12% Similarity=0.099 Sum_probs=81.7
Q ss_pred HHhhCchHHHHHHhhcC----------chHHHHHHHHHHHhcCHHHHHHHHhc--------CCHHHHHHHHhc---cCCh
Q 020640 199 AVRDGGVSVILKKIMDG----------VHVDELLAILAMLSTNHRAVEEIGDL--------GGVSCMLRIIRE---STCD 257 (323)
Q Consensus 199 i~~~g~v~~Lv~ll~~~----------~~~~~a~~~L~~l~~~~~~~~~i~~~--------g~i~~Lv~ll~~---~~~~ 257 (323)
+...|++..++++.... ++...|+.+|+-+..-|+++.++... .|+..++..-.. -.++
T Consensus 597 flkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dp 676 (1516)
T KOG1832|consen 597 FLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDP 676 (1516)
T ss_pred HHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCH
Confidence 34446666677766532 34677888888888889888887532 145555544432 1248
Q ss_pred hHHHHHHHHHHHhcccChHhHH----------------------------------HHHhhcccHHHHHHHhhcC-----
Q 020640 258 RNKENCIAILHTICLSDRTKWK----------------------------------AMREEESTHGTISKLAQDG----- 298 (323)
Q Consensus 258 ~~~~~a~~~L~~L~~~~~~~~~----------------------------------~~~~~~~~i~~L~~ll~~~----- 298 (323)
.++..|+.++.|+.+..|+.+. ..++..++|..|++|++-.
T Consensus 677 ei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~ 756 (1516)
T KOG1832|consen 677 EIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTT 756 (1516)
T ss_pred HHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCc
Confidence 8999999999998776643221 1234678999999998764
Q ss_pred CHHHHHHHHHHHHHHhcchhh
Q 020640 299 TARAKRKATGILERLKRTVNL 319 (323)
Q Consensus 299 ~~~~~~~A~~~L~~l~~~~~~ 319 (323)
.+.++.-|+..|--|++++..
T Consensus 757 aD~IRalAc~~L~GLaR~~tV 777 (1516)
T KOG1832|consen 757 ADCIRALACRVLLGLARDDTV 777 (1516)
T ss_pred HHHHHHHHHHHHhccccCcHH
Confidence 367788888888877776544
No 186
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=92.46 E-value=4.6 Score=35.38 Aligned_cols=184 Identities=17% Similarity=0.171 Sum_probs=110.4
Q ss_pred HHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCC-cHHHHHHHHhc----CCHHHHHHHHHHHHHhc
Q 020640 75 IPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPM-VIPLLMDALRS----GTIETRSNAAAALFTLS 149 (323)
Q Consensus 75 i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g-~i~~Lv~ll~~----~~~~~~~~a~~~L~~L~ 149 (323)
...+...+.+. .++-+--++.+++-+..++.....+...++ ....+..++.. .++..+..+++++.|+-
T Consensus 65 ~~~~~~~~~~W------p~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF 138 (268)
T PF08324_consen 65 LILLLKILLSW------PPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLF 138 (268)
T ss_dssp HHHHHHHHCCS-------CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC------CCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhh
Confidence 45556666544 234577788888887777765555544332 24445555543 46888999999999998
Q ss_pred CCCCchhhhhc-cC-ChHHHHHHhhhc----CHhHHHHHHHHHHHhccCCc-hhH-HHHhhCchHHHHHHhh----cCch
Q 020640 150 ALDSNKEVIGK-SG-ALKPLIDLLDEG----HQSAMKDVASAIFNLCITHE-NKA-RAVRDGGVSVILKKIM----DGVH 217 (323)
Q Consensus 150 ~~~~~~~~i~~-~g-~i~~Lv~lL~~~----~~~~~~~al~aL~~L~~~~~-~~~-~i~~~g~v~~Lv~ll~----~~~~ 217 (323)
.+...+..+.. .+ .+...+..+... +..++..++..+.|++..-- .+. .-.....+..+++.+. +++.
T Consensus 139 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea 218 (268)
T PF08324_consen 139 SHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEA 218 (268)
T ss_dssp TSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHH
T ss_pred CCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHH
Confidence 88888887776 33 344444433333 67889999999999965321 110 0011113444555332 2267
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHhc-CCHHHHHHHHhccCChhHHHHHH
Q 020640 218 VDELLAILAMLSTNHRAVEEIGDL-GGVSCMLRIIRESTCDRNKENCI 264 (323)
Q Consensus 218 ~~~a~~~L~~l~~~~~~~~~i~~~-g~i~~Lv~ll~~~~~~~~~~~a~ 264 (323)
..+++.+|.++...++......+. |+-..+-..-..+..+++++.+.
T Consensus 219 ~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ 266 (268)
T PF08324_consen 219 LYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAA 266 (268)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhc
Confidence 888899999999877666666653 54444444444444466666554
No 187
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=92.29 E-value=0.96 Score=38.23 Aligned_cols=149 Identities=16% Similarity=0.143 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccc-hhhhhhccCCcHHH
Q 020640 47 QTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN-NKKLVAETPMVIPL 125 (323)
Q Consensus 47 ~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~g~i~~ 125 (323)
..+|+..|.-++. .++.+..|.+ +..--.+..+|...+. .+..+.++..++.++..|-.+++ ....+.....++|.
T Consensus 117 vcnaL~lLQclaS-hPetk~~Fl~-AhiplflypfLntss~-~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPL 193 (315)
T COG5209 117 VCNALNLLQCLAS-HPETKKVFLD-AHIPLFLYPFLNTSSS-NSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPL 193 (315)
T ss_pred HHHHHHHHHHHhc-Ccchheeeee-cccceeeHhhhhcccc-CCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHH
Confidence 4668888888885 6888999999 7655455566653210 04467789999999999987776 44444444558999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhc--------cCChHHHHHH-hhhcCHhHHHHHHHHHHHhccCCchh
Q 020640 126 LMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK--------SGALKPLIDL-LDEGHQSAMKDVASAIFNLCITHENK 196 (323)
Q Consensus 126 Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~--------~g~i~~Lv~l-L~~~~~~~~~~al~aL~~L~~~~~~~ 196 (323)
.++++..+++-.+.-++.++..+-.++..-..+.+ ...+..++.- .+.+.....++++++-..||.....|
T Consensus 194 cLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR 273 (315)
T COG5209 194 CLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHAR 273 (315)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHH
Confidence 99999999998888888888888776654333221 1122222222 22345566677777666666555544
Q ss_pred HH
Q 020640 197 AR 198 (323)
Q Consensus 197 ~~ 198 (323)
..
T Consensus 274 ~l 275 (315)
T COG5209 274 AL 275 (315)
T ss_pred HH
Confidence 43
No 188
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=92.06 E-value=0.41 Score=40.40 Aligned_cols=99 Identities=11% Similarity=0.078 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhc----cCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHH
Q 020640 218 VDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRE----STCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISK 293 (323)
Q Consensus 218 ~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~----~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ 293 (323)
.-.++.+|..++++|+.|..|+++-+--.|-.++.. +.-+.++..+.+.+..|..++....-.++....+++.+++
T Consensus 117 vcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 117 VCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred HHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 456788888999999999999988643333344432 1225578899999999999887656677778899999999
Q ss_pred HhhcCCHHHHHHHHHHHHHHhcc
Q 020640 294 LAQDGTARAKRKATGILERLKRT 316 (323)
Q Consensus 294 ll~~~~~~~~~~A~~~L~~l~~~ 316 (323)
+...|++-.|.-|+.++..+-.-
T Consensus 197 Ime~gSElSktvaifI~qkil~d 219 (315)
T COG5209 197 IMELGSELSKTVAIFIFQKILGD 219 (315)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcc
Confidence 99999999999999998876543
No 189
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=91.95 E-value=16 Score=37.27 Aligned_cols=221 Identities=10% Similarity=0.011 Sum_probs=142.3
Q ss_pred CchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCc
Q 020640 43 TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMV 122 (323)
Q Consensus 43 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~ 122 (323)
.+..-.+|..++..++.....+...+.. .+...++.+.- +..+.++..|+.++...+....... ..+++
T Consensus 463 ~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~---fl~~~v~~l~~-----~~~~~~ki~a~~~~~~~~~~~vl~~---~~p~i 531 (1005)
T KOG2274|consen 463 SPFLLLRAFLTISKFSSSTVINPQLLQH---FLNATVNALTM-----DVPPPVKISAVRAFCGYCKVKVLLS---LQPMI 531 (1005)
T ss_pred CHHHHHHHHHHHHHHHhhhccchhHHHH---HHHHHHHhhcc-----CCCCchhHHHHHHHHhccCceeccc---cchHH
Confidence 3555568888888888654433322222 34445555542 4456788888888876662221111 12456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhh--hcCHhHHHHHHHHHHHhccCCchhHHHH
Q 020640 123 IPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLD--EGHQSAMKDVASAIFNLCITHENKARAV 200 (323)
Q Consensus 123 i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~~~~~al~aL~~L~~~~~~~~~i~ 200 (323)
+..|+.+....+.++......+|...+..+.-.....+..+.|..+.+.. ++++-+...+-.++-.|+....+...+.
T Consensus 532 ld~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~ 611 (1005)
T KOG2274|consen 532 LDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQ 611 (1005)
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchH
Confidence 77777777777889999999999999887766666666767787777654 3577788888888888877444444444
Q ss_pred hhCchHHHHHHhhcC------chHHHHHHHHHHHhcC--HHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcc
Q 020640 201 RDGGVSVILKKIMDG------VHVDELLAILAMLSTN--HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICL 272 (323)
Q Consensus 201 ~~g~v~~Lv~ll~~~------~~~~~a~~~L~~l~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~ 272 (323)
+. .+|.++..|... ....-++.+|.-+..+ ++.-..++. -+.+++.+..-++++..+-+++-.+|..+..
T Consensus 612 e~-~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~-~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 612 ER-LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC-YAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred HH-HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH-HHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 43 889999998754 3455566666655553 232222322 2467777666545557777888888888877
Q ss_pred cChH
Q 020640 273 SDRT 276 (323)
Q Consensus 273 ~~~~ 276 (323)
.+.+
T Consensus 690 ~~~e 693 (1005)
T KOG2274|consen 690 VTLE 693 (1005)
T ss_pred cCHH
Confidence 6544
No 190
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.44 E-value=1.5 Score=45.36 Aligned_cols=129 Identities=22% Similarity=0.230 Sum_probs=100.5
Q ss_pred CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCC
Q 020640 42 ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPM 121 (323)
Q Consensus 42 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g 121 (323)
++|+.|..|..+|.+++--+.+++ + ..+|.|+..+.. ++++.++.+++-++.-++..-++ +++ .
T Consensus 935 sdp~Lq~AAtLaL~klM~iSa~fc----e--s~l~llftimek-----sp~p~IRsN~VvalgDlav~fpn---lie-~- 998 (1251)
T KOG0414|consen 935 SDPELQAAATLALGKLMCISAEFC----E--SHLPLLFTIMEK-----SPSPRIRSNLVVALGDLAVRFPN---LIE-P- 998 (1251)
T ss_pred CCHHHHHHHHHHHHHHhhhhHHHH----H--HHHHHHHHHHhc-----CCCceeeecchheccchhhhccc---ccc-h-
Confidence 458889999999999986555443 3 458889999975 67899999999999888764433 333 2
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhc
Q 020640 122 VIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLC 190 (323)
Q Consensus 122 ~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~ 190 (323)
+-+.|.+.|.++++.+++.|..+|.+|-.++- +--.|-+..+..+|.++++.++..|=.....|+
T Consensus 999 ~T~~Ly~rL~D~~~~vRkta~lvlshLILndm----iKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 999 WTEHLYRRLRDESPSVRKTALLVLSHLILNDM----IKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred hhHHHHHHhcCccHHHHHHHHHHHHHHHHhhh----hHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 56778889999999999999999999976552 222789999999999999988888875554444
No 191
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=91.43 E-value=1.4 Score=38.66 Aligned_cols=155 Identities=21% Similarity=0.200 Sum_probs=98.2
Q ss_pred chhHHHHHHHHHHHhccChhhHHHHhhhcC-CHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCC-
Q 020640 44 LPDQTEAAKELRLLTKRMPSFRALFGESHD-AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPM- 121 (323)
Q Consensus 44 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g-~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g- 121 (323)
.+.+..++..++-+..+ +.....+....+ ....+..++..... +..+..+.-+++++.|+-.+...+..+....+
T Consensus 77 ~~~~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~ 153 (268)
T PF08324_consen 77 PESRFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSS--SSPPANQMLALRLLANLFSHPPGRQLLLSHFDS 153 (268)
T ss_dssp CCC-HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTT--TSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHT
T ss_pred CccchhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccC--CCcHHHHHHHHHHHHHhhCCCccHHHHHhcccc
Confidence 34567788888888764 444445544122 35666666655432 45788899999999999888888888887543
Q ss_pred cHHHHHHHHhcC----CHHHHHHHHHHHHHhcCCC--CchhhhhccCChHHHHHHhhh--cCHhHHHHHHHHHHHhccCC
Q 020640 122 VIPLLMDALRSG----TIETRSNAAAALFTLSALD--SNKEVIGKSGALKPLIDLLDE--GHQSAMKDVASAIFNLCITH 193 (323)
Q Consensus 122 ~i~~Lv~ll~~~----~~~~~~~a~~~L~~L~~~~--~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~al~aL~~L~~~~ 193 (323)
.+...+..+... +..++..++..+.|++..- .....-.....+..+++.+.. .++++...++-+|++|...+
T Consensus 154 ~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~ 233 (268)
T PF08324_consen 154 SILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSS 233 (268)
T ss_dssp CHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCS
T ss_pred hHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccC
Confidence 222222222333 6788889999999997421 111111112245566664332 58999999999999999777
Q ss_pred chhHHHHh
Q 020640 194 ENKARAVR 201 (323)
Q Consensus 194 ~~~~~i~~ 201 (323)
+.......
T Consensus 234 ~~~~~~~~ 241 (268)
T PF08324_consen 234 DSAKQLAK 241 (268)
T ss_dssp HHHHHHCC
T ss_pred hhHHHHHH
Confidence 66666655
No 192
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=90.99 E-value=1.1 Score=45.33 Aligned_cols=153 Identities=16% Similarity=0.205 Sum_probs=95.2
Q ss_pred hHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHH
Q 020640 64 FRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAA 143 (323)
Q Consensus 64 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~ 143 (323)
+|..|.. ..+|.|++...+. ....+..-+.+|.++-.+-.....+-+.+...|.|++.|.-++..++..+..
T Consensus 860 ykQRfF~--~ivP~l~~~~~t~------~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~ 931 (1030)
T KOG1967|consen 860 YKQRFFC--DIVPILVSKFETA------PGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLR 931 (1030)
T ss_pred HHHHHHH--hhHHHHHHHhccC------CccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhh
Confidence 4444444 4788888877732 3344555555665554433333333333456788888888889999888888
Q ss_pred HHHHhcCCCCchhhhhccCChHHHHHHhhhcC---HhHHHHHHHHHHHhccC-CchhHHHHhhCchHHHHHHhhcC--ch
Q 020640 144 ALFTLSALDSNKEVIGKSGALKPLIDLLDEGH---QSAMKDVASAIFNLCIT-HENKARAVRDGGVSVILKKIMDG--VH 217 (323)
Q Consensus 144 ~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~---~~~~~~al~aL~~L~~~-~~~~~~i~~~g~v~~Lv~ll~~~--~~ 217 (323)
++..+......-..---...+|.++.+=++.+ ..++..|+.+|..|++. +.....-.+-.++..|...|+++ -+
T Consensus 932 ~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlV 1011 (1030)
T KOG1967|consen 932 TIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLV 1011 (1030)
T ss_pred hhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHH
Confidence 88887543322111111346677766655543 67899999999999984 33333333345777788888876 46
Q ss_pred HHHHHHH
Q 020640 218 VDELLAI 224 (323)
Q Consensus 218 ~~~a~~~ 224 (323)
|+.|+++
T Consensus 1012 R~eAv~t 1018 (1030)
T KOG1967|consen 1012 RKEAVDT 1018 (1030)
T ss_pred HHHHHHH
Confidence 7777653
No 193
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=90.70 E-value=12 Score=38.05 Aligned_cols=264 Identities=12% Similarity=0.069 Sum_probs=139.9
Q ss_pred HHHHHHHhcCC-chhHHHHHHHHHHHhcc-ChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcccc
Q 020640 33 FLSLLKKMSAT-LPDQTEAAKELRLLTKR-MPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD 110 (323)
Q Consensus 33 i~~Lv~~l~~~-~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~ 110 (323)
++....+++.. ...+..+..-...++.. +...+..+.. ...+|.+-.+.. +.+..++...+.....++-.-
T Consensus 357 ~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~-~~ilp~~~~lv~------d~~~~vr~a~a~~~~~~~p~~ 429 (759)
T KOG0211|consen 357 VPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPD-SSILPEVQVLVL------DNALHVRSALASVITGLSPIL 429 (759)
T ss_pred hhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccch-hhhhHHHHHHHh------cccchHHHHHhccccccCccC
Confidence 34444555432 34444444444444421 1122334444 455677776666 667777777776666554222
Q ss_pred chhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHh
Q 020640 111 NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL-DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNL 189 (323)
Q Consensus 111 ~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L 189 (323)
. +..-... ..|.++..+++..+.++....+.+..+-.. +......+....++.+..+-.....+++...+..+..+
T Consensus 430 ~-k~~ti~~--llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~l 506 (759)
T KOG0211|consen 430 P-KERTISE--LLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQL 506 (759)
T ss_pred C-cCcCccc--cChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHH
Confidence 2 2222221 467778888888999999888877666322 22233334445677777776666778888888888888
Q ss_pred ccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHH
Q 020640 190 CITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAIL 267 (323)
Q Consensus 190 ~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L 267 (323)
+.... ..+......+.+..-+.+. .+++.|...+..++..-. ...-.. -.++.++.+...++ -..+...+.++
T Consensus 507 a~q~~--~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w~~~-~~i~k~L~~~~q~~-y~~R~t~l~si 581 (759)
T KOG0211|consen 507 ALQLG--VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG-SEWARL-EEIPKLLAMDLQDN-YLVRMTTLFSI 581 (759)
T ss_pred HHhhh--hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cchhHH-HhhHHHHHHhcCcc-cchhhHHHHHH
Confidence 76544 2222221222222222222 456666666666554211 111111 12444444444322 33444444444
Q ss_pred HHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640 268 HTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 315 (323)
Q Consensus 268 ~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 315 (323)
..++.--.. ++. .....+.+..+..+..++++-+++..|..+.+
T Consensus 582 ~~la~v~g~---ei~-~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~ 625 (759)
T KOG0211|consen 582 HELAEVLGQ---EIT-CEDLLPVFLDLVKDPVANVRINVAKHLPKILK 625 (759)
T ss_pred HHHHHHhcc---HHH-HHHHhHHHHHhccCCchhhhhhHHHHHHHHHh
Confidence 444332211 222 23567777777777788888888777776654
No 194
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=90.49 E-value=8.8 Score=33.00 Aligned_cols=138 Identities=15% Similarity=0.041 Sum_probs=86.2
Q ss_pred HHHHH-HhhhcCHhHHHHHHHHHHHhccCC-chhHHHHhhCchHHHHHHhhcCch--HHHHHHHHHHHhcCHHHHHHHHh
Q 020640 165 KPLID-LLDEGHQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVILKKIMDGVH--VDELLAILAMLSTNHRAVEEIGD 240 (323)
Q Consensus 165 ~~Lv~-lL~~~~~~~~~~al~aL~~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~~~--~~~a~~~L~~l~~~~~~~~~i~~ 240 (323)
+.|+- +-+..+++.....+.+|..++.++ .+...+++ .|..+...+.. ..-+.+.+..+-..++.. .
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~-----~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~---f- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPPVLQ-----TLVSLVEQGSLELRYVALRLLTLLWKANDRH---F- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhHHHH-----HHHHHHcCCchhHHHHHHHHHHHHHHhCchH---H-
Confidence 34444 334468899999999999999988 55444443 45555555533 335566666665532111 1
Q ss_pred cCCHHHHHHH--Hh---c--cC--ChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHh-hcCCHHHHHHHHHHH
Q 020640 241 LGGVSCMLRI--IR---E--ST--CDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLA-QDGTARAKRKATGIL 310 (323)
Q Consensus 241 ~g~i~~Lv~l--l~---~--~~--~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~A~~~L 310 (323)
+.++.++.. ++ . +. ..+.....+..+..+|...|++ ....++.+..++ +++++.++..|..+|
T Consensus 74 -~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~------g~~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 -PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH------GVDLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred -HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh------HHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 333433333 11 1 11 1223445567888888888762 345778888888 788999999999999
Q ss_pred HHHhcchh
Q 020640 311 ERLKRTVN 318 (323)
Q Consensus 311 ~~l~~~~~ 318 (323)
.-|++...
T Consensus 147 ~~Lc~~~v 154 (234)
T PF12530_consen 147 APLCEAEV 154 (234)
T ss_pred HHHHHHhh
Confidence 99986543
No 195
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.09 E-value=22 Score=35.63 Aligned_cols=220 Identities=16% Similarity=0.174 Sum_probs=118.8
Q ss_pred hHHHHHHHHhc--C--CchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhccccc----C-------CCCCHHH
Q 020640 31 DHFLSLLKKMS--A--TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKC----E-------NGINPNL 95 (323)
Q Consensus 31 ~~i~~Lv~~l~--~--~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~----~-------~~~~~~~ 95 (323)
.++..|..... . +...+.-.+..++..+..++..+..+.+ .+.++|.+.+. | -+.+|..
T Consensus 203 rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~------~i~~lL~stssaV~fEaa~tlv~lS~~p~a 276 (948)
T KOG1058|consen 203 RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIR------CIYNLLSSTSSAVIFEAAGTLVTLSNDPTA 276 (948)
T ss_pred HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHH------HHHHHHhcCCchhhhhhcceEEEccCCHHH
Confidence 34555444441 2 2445566666666666666655555444 24444542111 0 0456777
Q ss_pred HHHHHHHHHHhcccc-c-hhhhhhccC-------------CcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhc
Q 020640 96 QEDVITTLLNLSIHD-N-NKKLVAETP-------------MVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK 160 (323)
Q Consensus 96 ~~~a~~~L~~ls~~~-~-~~~~i~~~~-------------g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~ 160 (323)
...|+..+..|.... + |.+.|+... |.+--++++|.+++-+++..+..+...|....
T Consensus 277 lk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr-------- 348 (948)
T KOG1058|consen 277 LKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR-------- 348 (948)
T ss_pred HHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc--------
Confidence 777777766654332 2 333332110 11112334445666667777666666665433
Q ss_pred cCChHHHHHHhhh-----------cCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcCchH--HHHHHHHHH
Q 020640 161 SGALKPLIDLLDE-----------GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHV--DELLAILAM 227 (323)
Q Consensus 161 ~g~i~~Lv~lL~~-----------~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~--~~a~~~L~~ 227 (323)
-+..++.+|+. ++..-+..-+.+|...+...+. +.+.+++.|++.+.+.+.. ...+..+..
T Consensus 349 --Nvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~----~aatvV~~ll~fisD~N~~aas~vl~FvrE 422 (948)
T KOG1058|consen 349 --NVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE----VAATVVSLLLDFISDSNEAAASDVLMFVRE 422 (948)
T ss_pred --cHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH----HHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 24445555442 2455678888888887664432 3345788899999876432 223333333
Q ss_pred Hhc-CHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccCh
Q 020640 228 LST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR 275 (323)
Q Consensus 228 l~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~ 275 (323)
.-. .|.-|..++ ..|++-+..-.+.+.-+.|+|++..-|....
T Consensus 423 ~iek~p~Lr~~ii-----~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 423 AIEKFPNLRASII-----EKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHHhCchHHHHHH-----HHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 322 455555554 4455444332236788899999988887765
No 196
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=89.60 E-value=1.9 Score=41.80 Aligned_cols=102 Identities=21% Similarity=0.218 Sum_probs=56.8
Q ss_pred cchhhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHH
Q 020640 25 ITEADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTL 103 (323)
Q Consensus 25 ~~~~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L 103 (323)
++.....++..++++.. +|..+|..|+..|-.+|++++++...+.+ .|+++|. ++++......-.+|
T Consensus 53 FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaD------vL~QlL~------tdd~~E~~~v~~sL 120 (556)
T PF05918_consen 53 FPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVAD------VLVQLLQ------TDDPVELDAVKNSL 120 (556)
T ss_dssp -GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHH------HHHHHTT---------HHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHH------HHHHHHh------cccHHHHHHHHHHH
Confidence 34455678889999985 67889999999999999887776654444 6888998 55555444444455
Q ss_pred HHhccccchhhhhhccCCcHHHHHHHHh---cCCHHHHHHHHHHHH
Q 020640 104 LNLSIHDNNKKLVAETPMVIPLLMDALR---SGTIETRSNAAAALF 146 (323)
Q Consensus 104 ~~ls~~~~~~~~i~~~~g~i~~Lv~ll~---~~~~~~~~~a~~~L~ 146 (323)
..+-..+ .+ +.+..+...+. ++++.+++.++..|.
T Consensus 121 ~~ll~~d-~k-------~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 121 MSLLKQD-PK-------GTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp HHHHHH--HH-------HHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred HHHHhcC-cH-------HHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 4442211 11 12233333333 455666666666554
No 197
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.55 E-value=3.2 Score=43.22 Aligned_cols=141 Identities=21% Similarity=0.166 Sum_probs=100.0
Q ss_pred CHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHh-cCCHHHHHHHHHHHHHhcCCC
Q 020640 74 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALD 152 (323)
Q Consensus 74 ~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~-~~~~~~~~~a~~~L~~L~~~~ 152 (323)
..|.++...+...- ..+|+++..|.-+|..+-.-. ..+++. ..|.|+.++. ++++.++.++.-++..|+.--
T Consensus 920 f~piv~e~c~n~~~--~sdp~Lq~AAtLaL~klM~iS---a~fces--~l~llftimeksp~p~IRsN~VvalgDlav~f 992 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGL--FSDPELQAAATLALGKLMCIS---AEFCES--HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF 992 (1251)
T ss_pred HHHHHHHHhcCCCc--CCCHHHHHHHHHHHHHHhhhh---HHHHHH--HHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence 45666666654433 668999999999998774432 345554 3899999997 789999999999999997422
Q ss_pred CchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhh-CchHHHHHHhhcC--chHHHHHHHHHHHh
Q 020640 153 SNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRD-GGVSVILKKIMDG--VHVDELLAILAMLS 229 (323)
Q Consensus 153 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~-g~v~~Lv~ll~~~--~~~~~a~~~L~~l~ 229 (323)
+| +++. .-+.|...|++.++.+++.|+..|.+|-..+ ++.. |.+..+...|.++ .++.-|=.....|+
T Consensus 993 pn---lie~-~T~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 993 PN---LIEP-WTEHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred cc---ccch-hhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 21 2332 4567788888899999999999999997644 3443 8888888888887 34444444444444
Q ss_pred c
Q 020640 230 T 230 (323)
Q Consensus 230 ~ 230 (323)
.
T Consensus 1064 ~ 1064 (1251)
T KOG0414|consen 1064 S 1064 (1251)
T ss_pred h
Confidence 3
No 198
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.46 E-value=28 Score=35.91 Aligned_cols=137 Identities=10% Similarity=0.061 Sum_probs=87.2
Q ss_pred CcHHHHHHHHh------cC--CHHHHHHHHHHHHHhcC---CCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHh
Q 020640 121 MVIPLLMDALR------SG--TIETRSNAAAALFTLSA---LDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNL 189 (323)
Q Consensus 121 g~i~~Lv~ll~------~~--~~~~~~~a~~~L~~L~~---~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L 189 (323)
|.++.++.++. .+ ++.-+..|..++.+|+. ..+.-+..++.-.++.++..++++..-.+..|++.+..+
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~ 489 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQF 489 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence 46778888886 22 56667788888888862 222223344444667777778888888999999999999
Q ss_pred ccCC-chhHHHHhhCchHHHHHHhh-cC--chHHHHHHHHHHHhcC-HHHHHHHHhc--CCHHHHHHHHhccCChhH
Q 020640 190 CITH-ENKARAVRDGGVSVILKKIM-DG--VHVDELLAILAMLSTN-HRAVEEIGDL--GGVSCMLRIIRESTCDRN 259 (323)
Q Consensus 190 ~~~~-~~~~~i~~~g~v~~Lv~ll~-~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~--g~i~~Lv~ll~~~~~~~~ 259 (323)
+.-+ .+...+.+ ++......|. +. .++-.|+-+|.-+-++ +.....+..+ +.++.|+++.++-.++.+
T Consensus 490 ~~~df~d~~~l~~--ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~L 564 (1010)
T KOG1991|consen 490 SSIDFKDPNNLSE--ALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDL 564 (1010)
T ss_pred HhccCCChHHHHH--HHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHH
Confidence 8433 33333222 3344555555 44 5777788888877765 4444445443 567888888876443433
No 199
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=89.33 E-value=5.5 Score=40.11 Aligned_cols=195 Identities=15% Similarity=0.105 Sum_probs=119.1
Q ss_pred HHHHhccccc-hhhhhhccCCcHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCCCchhhhhccCChH--HHHHHhhhc-CH
Q 020640 102 TLLNLSIHDN-NKKLVAETPMVIPLLMDALRS-GTIETRSNAAAALFTLSALDSNKEVIGKSGALK--PLIDLLDEG-HQ 176 (323)
Q Consensus 102 ~L~~ls~~~~-~~~~i~~~~g~i~~Lv~ll~~-~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~--~Lv~lL~~~-~~ 176 (323)
+|+++..... +++.+.+.+| ...+...++. .+.+.+..+.+.+.+++...+++.......-+. ..-.++..- +.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g-~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGG-MKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhccc-HHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchh
Confidence 6667765544 7888888776 8889999874 577889999999999987665544443322222 222233333 33
Q ss_pred hHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcCchHHHHHHHHHHHhc-CHHHHHHHHhcCCHHH-HHHHHhcc
Q 020640 177 SAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLST-NHRAVEEIGDLGGVSC-MLRIIRES 254 (323)
Q Consensus 177 ~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~-Lv~ll~~~ 254 (323)
+....+...|+.+..+.+. ..+. ..++.+...+..... .+.....+.....+.. +..++..+
T Consensus 573 ersY~~~siLa~ll~~~~~---~~~~-------------~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s 636 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEK---TTEC-------------VFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLS 636 (699)
T ss_pred hHHHHHHHHHHHHHhCCCc---Cccc-------------cchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhccc
Confidence 6677777777776554433 1111 122223222222222 2222222222222233 66666666
Q ss_pred CChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhc-CCHHHHHHHHHHHHHHh
Q 020640 255 TCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD-GTARAKRKATGILERLK 314 (323)
Q Consensus 255 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~A~~~L~~l~ 314 (323)
..+..+--|++++.+++...++ ..+.+.+.++++.+.++-.. ....++..+...+.+..
T Consensus 637 ~~~g~~lWal~ti~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 696 (699)
T KOG3665|consen 637 KSDGSQLWALWTIKNVLEQNKE-YCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESCE 696 (699)
T ss_pred CCCchHHHHHHHHHHHHHcChh-hhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhccc
Confidence 6688899999999999999987 66777788999998887533 36666777666665543
No 200
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.02 E-value=26 Score=34.94 Aligned_cols=117 Identities=15% Similarity=0.105 Sum_probs=75.3
Q ss_pred CHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC
Q 020640 74 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS 153 (323)
Q Consensus 74 ~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~ 153 (323)
.+..++..+-.+.+ +.+..++...+.+|..++........-+-+ +....+..-+.+..+.++..|..+|..+-..+.
T Consensus 82 lV~~~f~hlLRg~E--skdk~VRfrvlqila~l~d~~~eidd~vfn-~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~ 158 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTE--SKDKKVRFRVLQILALLSDENAEIDDDVFN-KLNEKLLIRLKDREPNVRIQAVLALSRLQGDPK 158 (892)
T ss_pred HHHHHHHHHHhccc--CcchhHHHHHHHHHHHHhccccccCHHHHH-HHHHHHHHHHhccCchHHHHHHHHHHHHhcCCC
Confidence 44445444433443 788999999999999887633333333332 355666666677788999999999999964332
Q ss_pred chhhhhccCChHHHHHHhhh-cCHhHHHHHHHHHHHhccCCchhHHHH
Q 020640 154 NKEVIGKSGALKPLIDLLDE-GHQSAMKDVASAIFNLCITHENKARAV 200 (323)
Q Consensus 154 ~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~al~aL~~L~~~~~~~~~i~ 200 (323)
+ -+..++..+..+++. ++++++..++. |++-++.....++
T Consensus 159 d----ee~~v~n~l~~liqnDpS~EVRRaaLs---nI~vdnsTlp~Iv 199 (892)
T KOG2025|consen 159 D----EECPVVNLLKDLIQNDPSDEVRRAALS---NISVDNSTLPCIV 199 (892)
T ss_pred C----CcccHHHHHHHHHhcCCcHHHHHHHHH---hhccCcccchhHH
Confidence 1 113467788888876 48889988766 4444554444443
No 201
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=88.44 E-value=2.2 Score=36.53 Aligned_cols=83 Identities=22% Similarity=0.257 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHhccccchhhhhhccCC------cHHHHHHHHh-cCCHHHHHHHHHHHHHhcCCCCch--hhhhccCC
Q 020640 93 PNLQEDVITTLLNLSIHDNNKKLVAETPM------VIPLLMDALR-SGTIETRSNAAAALFTLSALDSNK--EVIGKSGA 163 (323)
Q Consensus 93 ~~~~~~a~~~L~~ls~~~~~~~~i~~~~g------~i~~Lv~ll~-~~~~~~~~~a~~~L~~L~~~~~~~--~~i~~~g~ 163 (323)
-.-|..|+.+|..|+..+.|...+...+. ++..|++++. .+++-.++-|+.+|.+|+..++.. ....+.++
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 45789999999999999888877776543 2223455554 458899999999999999877653 33345889
Q ss_pred hHHHHHHhhhcC
Q 020640 164 LKPLIDLLDEGH 175 (323)
Q Consensus 164 i~~Lv~lL~~~~ 175 (323)
|..|+.++.+..
T Consensus 218 i~~Li~FiE~a~ 229 (257)
T PF12031_consen 218 ISHLIAFIEDAE 229 (257)
T ss_pred HHHHHHHHHHHH
Confidence 999999998753
No 202
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=87.80 E-value=1.7 Score=43.94 Aligned_cols=116 Identities=19% Similarity=0.199 Sum_probs=83.1
Q ss_pred cccchhhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCC-HHHHHHHH
Q 020640 23 EGITEADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGIN-PNLQEDVI 100 (323)
Q Consensus 23 ~~~~~~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~-~~~~~~a~ 100 (323)
++..|......|.|++.|+ .|..+|..++.++..+....+.....-.+ -.+|.++.+=+.+ +.+ ..+++.|+
T Consensus 901 ~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~--Tlvp~lLsls~~~----~n~~~~VR~~AL 974 (1030)
T KOG1967|consen 901 QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS--TLVPYLLSLSSDN----DNNMMVVREDAL 974 (1030)
T ss_pred HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh--HHHHHHHhcCCCC----CcchhHHHHHHH
Confidence 4445556678899999997 88999999999999998776655544444 3677777765522 222 77999999
Q ss_pred HHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHH
Q 020640 101 TTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAA 144 (323)
Q Consensus 101 ~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~ 144 (323)
..|..|...-..+....-.+.++..|+..|.++..-+++.|+.+
T Consensus 975 qcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 975 QCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred HHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 99999987444333222234478888899888877888888765
No 203
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=87.69 E-value=31 Score=35.05 Aligned_cols=210 Identities=13% Similarity=0.062 Sum_probs=120.8
Q ss_pred CCCHHHHHHHHHHHHHhccccc-hhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHH
Q 020640 90 GINPNLQEDVITTLLNLSIHDN-NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLI 168 (323)
Q Consensus 90 ~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv 168 (323)
++++.++......+..+-...+ .....+... .+|.++.+-....-.++....+.+..++.... ..+.+...-+.+.
T Consensus 448 de~~~V~lnli~~ls~~~~v~~v~g~~~~s~s-lLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~~~~~~~~~~l~~ 524 (759)
T KOG0211|consen 448 DEDPIVRLNLIDKLSLLEEVNDVIGISTVSNS-LLPAIVELAEDLLWRVRLAILEYIPQLALQLG--VEFFDEKLAELLR 524 (759)
T ss_pred hhhHHHHHhhHHHHHHHHhccCcccchhhhhh-hhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--hHHhhHHHHHHHH
Confidence 6778888888766654432222 222333322 57777777666667777778888888775432 2333322233333
Q ss_pred HHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHH---HHHHHhcCHHHHHHHHhcCC
Q 020640 169 DLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLA---ILAMLSTNHRAVEEIGDLGG 243 (323)
Q Consensus 169 ~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~---~L~~l~~~~~~~~~i~~~g~ 243 (323)
..+.+..-+++.+|+..+..++.... ..-.. ...++.++.....+ -.+...+. .|+.+...+-..+ ..
T Consensus 525 ~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w~~-~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~-----~L 597 (759)
T KOG0211|consen 525 TWLPDHVYSIREAAARNLPALVETFG-SEWAR-LEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCE-----DL 597 (759)
T ss_pred hhhhhhHHHHHHHHHHHhHHHHHHhC-cchhH-HHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHH-----HH
Confidence 34444456788889988888766444 11111 12344444444432 33443333 4444444443333 34
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 020640 244 VSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK 314 (323)
Q Consensus 244 i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~ 314 (323)
++.+.++..+.. +.++-+++..|..+...-.. .. .+..+.+.+..+..+.+..++..|..++..+.
T Consensus 598 lp~~~~l~~D~v-anVR~nvak~L~~i~~~L~~---~~-~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 598 LPVFLDLVKDPV-ANVRINVAKHLPKILKLLDE---SV-RDEEVLPLLETLSSDQELDVRYRAILAFGSIE 663 (759)
T ss_pred hHHHHHhccCCc-hhhhhhHHHHHHHHHhhcch---HH-HHHHHHHHHHHhccCcccchhHHHHHHHHHHH
Confidence 577777777654 88999999998887664422 22 23456666666767667777777776665543
No 204
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=87.58 E-value=20 Score=32.02 Aligned_cols=219 Identities=11% Similarity=0.081 Sum_probs=139.0
Q ss_pred hhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCC-HHHHHHhhcccccCCCCCHHHHHHHHHHHHH
Q 020640 28 ADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDA-IPQLLSPLSESKCENGINPNLQEDVITTLLN 105 (323)
Q Consensus 28 ~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~-i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ 105 (323)
...|....|+..+. -+-+.+..++....++-+.....|...++--.. .+.+-.+++.. ...+++.-.+-..+..
T Consensus 76 ~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~----~~~~~iaL~cg~mlrE 151 (342)
T KOG1566|consen 76 YNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGY----ENTPEIALTCGNMLRE 151 (342)
T ss_pred HhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhh----ccchHHHHHHHHHHHH
Confidence 34456666777663 455667777777777766554444332221111 22223333321 1125555555555666
Q ss_pred hccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhc-CCCCchhhhhccC---C-hHHHHHHhhhcCHhHHH
Q 020640 106 LSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLS-ALDSNKEVIGKSG---A-LKPLIDLLDEGHQSAMK 180 (323)
Q Consensus 106 ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~-~~~~~~~~i~~~g---~-i~~Lv~lL~~~~~~~~~ 180 (323)
...++.-.+.+..+. .........+.++-++...|..+...+. .+......+...+ . .+.--.++.+++--++.
T Consensus 152 cirhe~LakiiL~s~-~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkr 230 (342)
T KOG1566|consen 152 CIRHEFLAKIILEST-NFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKR 230 (342)
T ss_pred HHhhHHHHHHHHcch-hHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHH
Confidence 555555555666655 4777888888888899999999998885 4433333333322 2 33466678888888999
Q ss_pred HHHHHHHHhccCCchhHHHHh----hCchHHHHHHhhcC--chHHHHHHHHHHHhcC----HHHHHHHHhcCCHHHHHHH
Q 020640 181 DVASAIFNLCITHENKARAVR----DGGVSVILKKIMDG--VHVDELLAILAMLSTN----HRAVEEIGDLGGVSCMLRI 250 (323)
Q Consensus 181 ~al~aL~~L~~~~~~~~~i~~----~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~----~~~~~~i~~~g~i~~Lv~l 250 (323)
.++.+|..+-.+..|-..+.. -..+..++.+|+++ .++-.|.-+..-...+ .+.+..++.+. +.|+++
T Consensus 231 qs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~Nr--~KLl~~ 308 (342)
T KOG1566|consen 231 QSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVRNR--PKLLEL 308 (342)
T ss_pred HHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHhCc--HHHHHH
Confidence 999999999888877666543 25778899999876 7888888888777765 36666677664 566666
Q ss_pred Hhc
Q 020640 251 IRE 253 (323)
Q Consensus 251 l~~ 253 (323)
+..
T Consensus 309 l~~ 311 (342)
T KOG1566|consen 309 LHD 311 (342)
T ss_pred HHH
Confidence 654
No 205
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=87.05 E-value=34 Score=34.12 Aligned_cols=129 Identities=12% Similarity=0.067 Sum_probs=78.0
Q ss_pred ccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC---chHHHHHHHHHHHhcCHHHHH
Q 020640 160 KSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHRAVE 236 (323)
Q Consensus 160 ~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~~~~~~ 236 (323)
...++|.|...++..+..++..++..+..++..=+ ...+..-.+|.+.++.... .++..++.++..+..
T Consensus 387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q------ 458 (700)
T KOG2137|consen 387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ------ 458 (700)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH------
Confidence 34567777777777788888889988888765444 3334444566666653322 467777777777771
Q ss_pred HHHhcCCHHHHHHHH---hccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCC
Q 020640 237 EIGDLGGVSCMLRII---RESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGT 299 (323)
Q Consensus 237 ~i~~~g~i~~Lv~ll---~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~ 299 (323)
.+-..-+++.+.-++ +..+ +.+......+...+....++- .+++ -+.+++.++-+...+.
T Consensus 459 ~lD~~~v~d~~lpi~~~~~~~d-p~iv~~~~~i~~~l~~~~~~g-~ev~-~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 459 RLDKAAVLDELLPILKCIKTRD-PAIVMGFLRIYEALALIIYSG-VEVM-AENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHHHHhHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHhhcccc-eeee-hhhhhhhhhhhhhccc
Confidence 111122333343333 3333 777777788877777766431 1222 3578888888776664
No 206
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=86.82 E-value=5.6 Score=32.16 Aligned_cols=109 Identities=14% Similarity=0.081 Sum_probs=67.3
Q ss_pred CHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhh-hccCCcHHHHHHHHhcC-CHHHHHHHHHHHHHhc--
Q 020640 74 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLV-AETPMVIPLLMDALRSG-TIETRSNAAAALFTLS-- 149 (323)
Q Consensus 74 ~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i-~~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~~L~-- 149 (323)
.+..+..+|+ +.++.-+-.++..+..+....+ ...+ ...+-++..++.+|+.+ ++.+.+.++.+|..+-
T Consensus 26 l~~ri~~LL~------s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 26 LVTRINSLLQ------SKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred HHHHHHHHhC------CCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 3455777777 6678888888888887754432 2333 22234677788888765 5677888888888874
Q ss_pred --CCCCchhhhhc---cCChHHHHHHhhhcCHhHHHHHHHHHHHhcc
Q 020640 150 --ALDSNKEVIGK---SGALKPLIDLLDEGHQSAMKDVASAIFNLCI 191 (323)
Q Consensus 150 --~~~~~~~~i~~---~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~ 191 (323)
..++...++.. .+.++.++++++. ......++.+|..+-.
T Consensus 99 ~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 99 IRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred hcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 33443444433 3344555555553 4566667777766643
No 207
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=86.80 E-value=3.9 Score=33.13 Aligned_cols=108 Identities=19% Similarity=0.169 Sum_probs=69.7
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhc--cCChHHHHHHhhhc-CHhHHHHHHHHHHHhccCCchhHH
Q 020640 122 VIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK--SGALKPLIDLLDEG-HQSAMKDVASAIFNLCITHENKAR 198 (323)
Q Consensus 122 ~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~--~g~i~~Lv~lL~~~-~~~~~~~al~aL~~L~~~~~~~~~ 198 (323)
.+..+..+|++.+.+.+..++..+.......+ .+.+.+ ..-+..|+..|+.. ...+.+.++.+|..|...-.....
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 45667888899999999999999888876432 233333 33567888888875 556788888888777543333333
Q ss_pred HHhh-------CchHHHHHHhhcCchHHHHHHHHHHHhc
Q 020640 199 AVRD-------GGVSVILKKIMDGVHVDELLAILAMLST 230 (323)
Q Consensus 199 i~~~-------g~v~~Lv~ll~~~~~~~~a~~~L~~l~~ 230 (323)
+.++ +.++.++.++++....+.++.+|..+-.
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLP 143 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3222 3455555566544566666666666554
No 208
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.78 E-value=8.5 Score=38.17 Aligned_cols=129 Identities=13% Similarity=0.096 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhc
Q 020640 135 IETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMD 214 (323)
Q Consensus 135 ~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~ 214 (323)
..+.+-+++.+..|-..+..-. ++ .|.+..+++-..+++..++..++..|.-+.........-+-.+....+..-+.+
T Consensus 60 dRIl~fla~fv~sl~q~d~e~D-lV-~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~D 137 (892)
T KOG2025|consen 60 DRILSFLARFVESLPQLDKEED-LV-AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKD 137 (892)
T ss_pred HHHHHHHHHHHHhhhccCchhh-HH-HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhc
Confidence 3455555555555543332111 22 346667777777788999999999999988755444444444555566655555
Q ss_pred C--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHH
Q 020640 215 G--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHT 269 (323)
Q Consensus 215 ~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~ 269 (323)
. .++.+|+-+|+.+-.++..- +..++..++.+++.++++++++.|+..+..
T Consensus 138 rep~VRiqAv~aLsrlQ~d~~de----e~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 138 REPNVRIQAVLALSRLQGDPKDE----ECPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred cCchHHHHHHHHHHHHhcCCCCC----cccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 4 78999999999887532110 113467788888877779999887765543
No 209
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=86.71 E-value=24 Score=32.89 Aligned_cols=152 Identities=11% Similarity=0.049 Sum_probs=102.1
Q ss_pred hHHHHHHhhhcC-HhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhh--cC----------chHHHHHHHHHHHhc
Q 020640 164 LKPLIDLLDEGH-QSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIM--DG----------VHVDELLAILAMLST 230 (323)
Q Consensus 164 i~~Lv~lL~~~~-~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~--~~----------~~~~~a~~~L~~l~~ 230 (323)
-..+++.|..+. ...+..++.+++-|+++...-..+...-.++.|+.+-. ++ .+...++.+|+|+..
T Consensus 47 ~e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf 126 (532)
T KOG4464|consen 47 GERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVF 126 (532)
T ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHh
Confidence 346777777765 44567788888888887765544433333444444332 11 357889999999999
Q ss_pred C-HHHHHHHHhcCCHHHHHHHHhc----cCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcC-------
Q 020640 231 N-HRAVEEIGDLGGVSCMLRIIRE----STCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG------- 298 (323)
Q Consensus 231 ~-~~~~~~i~~~g~i~~Lv~ll~~----~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~------- 298 (323)
+ +..|..+.+......+++.+.. ..-...+--=+..|.-|+.-..+.+.+++.+.++.+.+.+|+.+.
T Consensus 127 ~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~ 206 (532)
T KOG4464|consen 127 HSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEI 206 (532)
T ss_pred ccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCc
Confidence 5 6888888887666666655532 111334555667777777777777888988999999999997552
Q ss_pred -----CHHHHHHHHHHHHHHhc
Q 020640 299 -----TARAKRKATGILERLKR 315 (323)
Q Consensus 299 -----~~~~~~~A~~~L~~l~~ 315 (323)
+++--..|..+|+.+..
T Consensus 207 n~~~l~pqe~n~a~EaLK~~FN 228 (532)
T KOG4464|consen 207 NVPPLNPQETNRACEALKVFFN 228 (532)
T ss_pred CCCCCCHHHHHHHHHHHHHHhh
Confidence 12556677777777654
No 210
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=86.29 E-value=37 Score=33.61 Aligned_cols=175 Identities=17% Similarity=0.196 Sum_probs=103.0
Q ss_pred hhhhhHHHHHHHHhc-CC--------------------chhHHHHHHHHHHHhccChhhHHHHhhh--cCCHHHHHHhhc
Q 020640 27 EADRDHFLSLLKKMS-AT--------------------LPDQTEAAKELRLLTKRMPSFRALFGES--HDAIPQLLSPLS 83 (323)
Q Consensus 27 ~~~~~~i~~Lv~~l~-~~--------------------~~~~~~a~~~L~~l~~~~~~~~~~i~~~--~g~i~~Lv~lL~ 83 (323)
|.+......++..++ ++ .+++-.|+..|+.+..+...+-..+-.+ ...+..++..+.
T Consensus 520 ~d~~~~~eeil~li~~s~~~~~e~~~~l~~l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~ 599 (745)
T KOG0301|consen 520 PDEINGLEEILSLIKNSSHYSSEVLQSLLALAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN 599 (745)
T ss_pred cchhhhHHHHHHhhcCCCCccchhHHHHHHHHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc
Confidence 455566677777764 21 2335567888888877655433322210 123334444333
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHH---hcC-CHHHHHHHHHHHHHhc--CCCCchhh
Q 020640 84 ESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDAL---RSG-TIETRSNAAAALFTLS--ALDSNKEV 157 (323)
Q Consensus 84 ~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll---~~~-~~~~~~~a~~~L~~L~--~~~~~~~~ 157 (323)
.++..+..+++.|.|+-.++-.+..+... ...+...+ ++. +..++...+....|++ ....+-.
T Consensus 600 -------~~~an~ll~vR~L~N~f~~~~g~~~~~s~---~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~- 668 (745)
T KOG0301|consen 600 -------ADPANQLLVVRCLANLFSNPAGRELFMSR---LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ- 668 (745)
T ss_pred -------cchhHHHHHHHHHHHhccCHHHHHHHHHH---HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc-
Confidence 25778889999999998776667666553 22232222 332 3455555555555554 2222111
Q ss_pred hhccCChHHHHHHhhh-----cCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC
Q 020640 158 IGKSGALKPLIDLLDE-----GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG 215 (323)
Q Consensus 158 i~~~g~i~~Lv~lL~~-----~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~ 215 (323)
.++.+.|...+.. ++-+.....+-||.+|+..+....++...-.+..++..+++.
T Consensus 669 ---~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~~A~~~~v~sia~~~~~~ 728 (745)
T KOG0301|consen 669 ---LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQLAKNRSVDSIAKKLKEA 728 (745)
T ss_pred ---cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHHHHHhcCHHHHHHHHHHh
Confidence 4556666665543 244567778889999999988888887766777787777654
No 211
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=86.22 E-value=31 Score=32.67 Aligned_cols=182 Identities=14% Similarity=0.115 Sum_probs=103.6
Q ss_pred HHHHHHHHhcCC--chhHHHHHHHHHHHhccC-hhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc
Q 020640 32 HFLSLLKKMSAT--LPDQTEAAKELRLLTKRM-PSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 108 (323)
Q Consensus 32 ~i~~Lv~~l~~~--~~~~~~a~~~L~~l~~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~ 108 (323)
.+..++..++++ .+.+..|+..|..+...+ ...+..... ..+..+++.|.. +.+...+..|+++|..++.
T Consensus 287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~--~iL~~l~EvL~d-----~~~~~~k~laLrvL~~ml~ 359 (516)
T KOG2956|consen 287 LVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFA--EILLLLLEVLSD-----SEDEIIKKLALRVLREMLT 359 (516)
T ss_pred HHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHH--HHHHHHHHHHcc-----chhhHHHHHHHHHHHHHHH
Confidence 444455555433 556778888676666444 333443333 356678888883 4788899999999999876
Q ss_pred ccchhhhhhccC-CcHHHHHHHHhcCCHHHHHHHHH-HHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHH
Q 020640 109 HDNNKKLVAETP-MVIPLLMDALRSGTIETRSNAAA-ALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAI 186 (323)
Q Consensus 109 ~~~~~~~i~~~~-g~i~~Lv~ll~~~~~~~~~~a~~-~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL 186 (323)
....+ ++... -++..++..-++.++++...|.. ++..++.+.+.+ .|..+..++...+...-..++..+
T Consensus 360 ~Q~~~--l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~-------~I~~i~~~Ilt~D~~~~~~~iKm~ 430 (516)
T KOG2956|consen 360 NQPAR--LFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ-------CIVNISPLILTADEPRAVAVIKML 430 (516)
T ss_pred hchHh--hhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh-------HHHHHhhHHhcCcchHHHHHHHHH
Confidence 54322 22210 12333334434455555544443 445555555422 234444444445556666677777
Q ss_pred HHhccCCchhHHHHh--hCchHHHHHHhhcC--chHHHHHHHHHHHhc
Q 020640 187 FNLCITHENKARAVR--DGGVSVILKKIMDG--VHVDELLAILAMLST 230 (323)
Q Consensus 187 ~~L~~~~~~~~~i~~--~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~ 230 (323)
..++..-. +..+.. ....|.+++...+. .+++.++-+|-.|..
T Consensus 431 Tkl~e~l~-~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 431 TKLFERLS-AEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred HHHHhhcC-HHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 76655332 112211 24778888877755 678888877776654
No 212
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=85.80 E-value=16 Score=30.13 Aligned_cols=141 Identities=18% Similarity=0.136 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHHhccCh-----hhHHHHhh-h----cCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhh
Q 020640 46 DQTEAAKELRLLTKRMP-----SFRALFGE-S----HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKL 115 (323)
Q Consensus 46 ~~~~a~~~L~~l~~~~~-----~~~~~i~~-~----~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~ 115 (323)
+|..|+.+|..+++..+ .++..|.- . ...-+.|+..+-. ++++.++..|+.+|..|-.+....-.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~-----Dp~~kvR~aA~~~l~~lL~gsk~~L~ 76 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILK-----DPSPKVRAAAASALAALLEGSKPFLA 76 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHc-----CCchhHHHHHHHHHHHHHHccHHHHH
Confidence 57788888888886522 22233332 0 2244455544432 77899999999999887433211000
Q ss_pred hhc-----cCC--------------cHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCCCchhhhhccCChHHH----HHHh
Q 020640 116 VAE-----TPM--------------VIPLLMDALRSG-TIETRSNAAAALFTLSALDSNKEVIGKSGALKPL----IDLL 171 (323)
Q Consensus 116 i~~-----~~g--------------~i~~Lv~ll~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~L----v~lL 171 (323)
..+ .+. ....|+..|+.+ +..+....++++..|...-..... +.|.++.+ -.++
T Consensus 77 ~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL--~~~ll~~~v~~v~~~l 154 (182)
T PF13251_consen 77 QAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL--PPGLLTEVVTQVRPLL 154 (182)
T ss_pred HHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhc--CHhHHHHHHHHHHHHH
Confidence 000 001 223456666654 678888999999998765442111 23444444 4455
Q ss_pred hhcCHhHHHHHHHHHHHhccCC
Q 020640 172 DEGHQSAMKDVASAIFNLCITH 193 (323)
Q Consensus 172 ~~~~~~~~~~al~aL~~L~~~~ 193 (323)
.+.|..++..++.++..+....
T Consensus 155 ~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 155 RHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred hcCCCcHHHHHHHHHHHHHcCC
Confidence 6678889999999888876543
No 213
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=85.67 E-value=5.7 Score=39.27 Aligned_cols=153 Identities=14% Similarity=0.158 Sum_probs=89.2
Q ss_pred CChHHHHHHhhhc--CHhHHHHHHHHHHHhccCCc---hhHHH----Hhh-----C----chHHHHHHhhcC--chHHHH
Q 020640 162 GALKPLIDLLDEG--HQSAMKDVASAIFNLCITHE---NKARA----VRD-----G----GVSVILKKIMDG--VHVDEL 221 (323)
Q Consensus 162 g~i~~Lv~lL~~~--~~~~~~~al~aL~~L~~~~~---~~~~i----~~~-----g----~v~~Lv~ll~~~--~~~~~a 221 (323)
|.+-.|+..+... .....+-....|.++..+.. +...+ +.. | -...++.+|++. .++-..
T Consensus 240 ~~~aeli~~isde~n~~~l~edi~~~l~~l~fn~~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~ 319 (1128)
T COG5098 240 GLIAELIPSISDELNRCALKEDIPVLLKNLSFNLPDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCF 319 (1128)
T ss_pred HHHHHHHHHhHHHhhhhhhhcccHHHHhhceeecccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHH
Confidence 3444455555442 34455556667777766542 11111 111 1 134577778766 455555
Q ss_pred HHHHHHHhcCHHHHHHHHhc--CCHHHHHHHHhc---cCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhh
Q 020640 222 LAILAMLSTNHRAVEEIGDL--GGVSCMLRIIRE---STCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQ 296 (323)
Q Consensus 222 ~~~L~~l~~~~~~~~~i~~~--g~i~~Lv~ll~~---~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~ 296 (323)
+.+++|+..+-....+++++ .-+..|+.++.+ +.++.++.+|...+..++..+.. ..-..+.++...+..++
T Consensus 320 ~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk---~~~~r~ev~~lv~r~lq 396 (1128)
T COG5098 320 LEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSK---TVGRRHEVIRLVGRRLQ 396 (1128)
T ss_pred HHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccc---ccchHHHHHHHHHHHhh
Confidence 66666666542222233331 124444444432 23588999999999988876532 22223456777788899
Q ss_pred cCCHHHHHHHHHHHHHHh-cch
Q 020640 297 DGTARAKRKATGILERLK-RTV 317 (323)
Q Consensus 297 ~~~~~~~~~A~~~L~~l~-~~~ 317 (323)
+.+..++++|..+++.|. +|+
T Consensus 397 Drss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 397 DRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred hhhHHHHHHHHHHHHHHHhcCC
Confidence 999999999999998775 443
No 214
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=85.52 E-value=32 Score=34.08 Aligned_cols=115 Identities=19% Similarity=0.198 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHHHhcc----cc-------chhhhhhccCCcHHHHHHHHh----cCCHHHHHHHHHHHHHhcCCCCchh
Q 020640 92 NPNLQEDVITTLLNLSI----HD-------NNKKLVAETPMVIPLLMDALR----SGTIETRSNAAAALFTLSALDSNKE 156 (323)
Q Consensus 92 ~~~~~~~a~~~L~~ls~----~~-------~~~~~i~~~~g~i~~Lv~ll~----~~~~~~~~~a~~~L~~L~~~~~~~~ 156 (323)
++.+...|+-.+..+.. .. .....+.+. +++.+...+. ..+.+.+..++++|.|+..
T Consensus 448 ~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~--~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~------ 519 (618)
T PF01347_consen 448 SPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEK--YVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH------ 519 (618)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTT-----------SS--GG--GTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-------
T ss_pred ChhHHHHHHHHHHHHhCceeecccccccccccchhhHHH--HHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC------
Confidence 45666666666666532 21 112223222 4666666665 3467888889999999853
Q ss_pred hhhccCChHHHHHHhhhc---CHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC----chHHHHHHHH
Q 020640 157 VIGKSGALKPLIDLLDEG---HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG----VHVDELLAIL 225 (323)
Q Consensus 157 ~i~~~g~i~~Lv~lL~~~---~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~----~~~~~a~~~L 225 (323)
...++.|...+..+ +..++..|+.+|+.++.....+ +.+.+..++.+. ++|..|..+|
T Consensus 520 ----~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~-------v~~~l~~I~~n~~e~~EvRiaA~~~l 584 (618)
T PF01347_consen 520 ----PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK-------VREILLPIFMNTTEDPEVRIAAYLIL 584 (618)
T ss_dssp ----GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH-------HHHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred ----chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH-------HHHHHHHHhcCCCCChhHHHHHHHHH
Confidence 23678888877765 6778889999988774433221 233566766654 3455554433
No 215
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=85.06 E-value=15 Score=29.48 Aligned_cols=139 Identities=13% Similarity=0.086 Sum_probs=79.5
Q ss_pred CChHHHHHHhhhc-CHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcCchHHHHHHHHHHHhcCHHHHHHHHh
Q 020640 162 GALKPLIDLLDEG-HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGD 240 (323)
Q Consensus 162 g~i~~Lv~lL~~~-~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~l~~~~~~~~~i~~ 240 (323)
..++.|+++|+.+ +..++..++++|..|-.-++-+.+....+.- .-...-.+........ .+... ...-++..-
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~-~~~~~~~~~~~~~~~l---~~~~~-~~~~ee~y~ 84 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD-SKSSENSNDESTDISL---PMMGI-SPSSEEYYP 84 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC-ccccccccccchhhHH---hhccC-CCchHHHHH
Confidence 3567788888875 6899999999999986666655553322111 0000000001111111 11111 112333444
Q ss_pred cCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHH
Q 020640 241 LGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKAT 307 (323)
Q Consensus 241 ~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~ 307 (323)
.-++..|+.++++.+-..-...++.++.++.......+-..+ ..+++.++..++...+..++.--
T Consensus 85 ~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L--~~viP~~l~~i~~~~~~~~e~~~ 149 (160)
T PF11865_consen 85 TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL--PQVIPIFLRVIRTCPDSLREFYF 149 (160)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH--HHHhHHHHHHHHhCCHHHHHHHH
Confidence 445889999998754233455677777777654333344554 47999999999988777777633
No 216
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.75 E-value=48 Score=33.60 Aligned_cols=204 Identities=17% Similarity=0.147 Sum_probs=117.7
Q ss_pred HHHHHHhcCC-chhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccch
Q 020640 34 LSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNN 112 (323)
Q Consensus 34 ~~Lv~~l~~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~ 112 (323)
..|..+|.++ ...+.+|+..|..+..+..+.. ...|.+|+-.- +.|.+++...---|..-+..+.+
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS-------~~Fp~VVKNVa------skn~EVKkLVyvYLlrYAEeqpd 104 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKDVS-------LLFPAVVKNVA------SKNIEVKKLVYVYLLRYAEEQPD 104 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCcHH-------HHHHHHHHHhh------ccCHHHHHHHHHHHHHHhhcCCC
Confidence 4577888533 4567888887777766555533 23445666666 77888887665555544543333
Q ss_pred hhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccC
Q 020640 113 KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCIT 192 (323)
Q Consensus 113 ~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~ 192 (323)
-..+ -|-.+-+-|+++++.++..|+++|..+-. .++..=++-.+-+...+.++-+++.|+.|+-.|=.-
T Consensus 105 LALL-----SIntfQk~L~DpN~LiRasALRvlSsIRv------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL 173 (968)
T KOG1060|consen 105 LALL-----SINTFQKALKDPNQLIRASALRVLSSIRV------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL 173 (968)
T ss_pred ceee-----eHHHHHhhhcCCcHHHHHHHHHHHHhcch------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC
Confidence 2222 14456678899999999988888876622 112111122222334456889999999999888554
Q ss_pred C-chhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHH
Q 020640 193 H-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHT 269 (323)
Q Consensus 193 ~-~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~ 269 (323)
+ +.+.++.+ .+-.+|.+. .+.-.|+.+...+| |+.-+.|- +--..|+.++.+-+ +.-|.-....|..
T Consensus 174 d~e~k~qL~e-----~I~~LLaD~splVvgsAv~AF~evC--PerldLIH--knyrklC~ll~dvd-eWgQvvlI~mL~R 243 (968)
T KOG1060|consen 174 DPEQKDQLEE-----VIKKLLADRSPLVVGSAVMAFEEVC--PERLDLIH--KNYRKLCRLLPDVD-EWGQVVLINMLTR 243 (968)
T ss_pred ChhhHHHHHH-----HHHHHhcCCCCcchhHHHHHHHHhc--hhHHHHhh--HHHHHHHhhccchh-hhhHHHHHHHHHH
Confidence 4 44444433 455566665 34555666555554 33333332 22456666665322 4445555555544
Q ss_pred hc
Q 020640 270 IC 271 (323)
Q Consensus 270 L~ 271 (323)
-|
T Consensus 244 YA 245 (968)
T KOG1060|consen 244 YA 245 (968)
T ss_pred HH
Confidence 43
No 217
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=84.61 E-value=23 Score=36.26 Aligned_cols=145 Identities=16% Similarity=0.160 Sum_probs=94.7
Q ss_pred hHHHHHHHHhc--CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc
Q 020640 31 DHFLSLLKKMS--ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 108 (323)
Q Consensus 31 ~~i~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~ 108 (323)
+.+-.+++-.. .+..+...|+.+|..++......-..+.. +..+.+++.+. .....+++.+..++.....
T Consensus 294 ~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~--~v~p~lld~lk------ekk~~l~d~l~~~~d~~~n 365 (815)
T KOG1820|consen 294 GLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAK--NVFPSLLDRLK------EKKSELRDALLKALDAILN 365 (815)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHH--hhcchHHHHhh------hccHHHHHHHHHHHHHHHh
Confidence 34444444443 33556677888888888776655444444 57788888887 4566777777777665543
Q ss_pred ccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC--chhhhhccCChHHHHHHhhhcCHhHHHHHHHHH
Q 020640 109 HDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS--NKEVIGKSGALKPLIDLLDEGHQSAMKDVASAI 186 (323)
Q Consensus 109 ~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL 186 (323)
........+.++..+++.++..+..+...+.......+ +...-.-.+.++.++....+.+.+++..|..++
T Consensus 366 -------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~ 438 (815)
T KOG1820|consen 366 -------STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAV 438 (815)
T ss_pred -------cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHH
Confidence 11111246778889999999999987777666543222 111111145677888888888999999999998
Q ss_pred HHhc
Q 020640 187 FNLC 190 (323)
Q Consensus 187 ~~L~ 190 (323)
..+-
T Consensus 439 ~~v~ 442 (815)
T KOG1820|consen 439 AAVM 442 (815)
T ss_pred HHHH
Confidence 8763
No 218
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=84.31 E-value=7.5 Score=30.16 Aligned_cols=72 Identities=8% Similarity=0.113 Sum_probs=58.4
Q ss_pred CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhc---CCHHHHHHHHHHHHHHhc
Q 020640 243 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD---GTARAKRKATGILERLKR 315 (323)
Q Consensus 243 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~---~~~~~~~~A~~~L~~l~~ 315 (323)
++..|-+-|+.++ +.++..|+.+|-.+..+....+...+....++..|++++.. .++.+++++..++.....
T Consensus 38 a~raL~krl~~~n-~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 38 AARAIRKKIKYGN-PHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4677888888654 99999999999999988765566666566888889999875 489999999999988775
No 219
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.21 E-value=9.3 Score=34.06 Aligned_cols=136 Identities=13% Similarity=0.151 Sum_probs=89.2
Q ss_pred ChHHHHHHhhhcCHhHHHHHHHHHHHhccCCc-hhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHH
Q 020640 163 ALKPLIDLLDEGHQSAMKDVASAIFNLCITHE-NKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEI 238 (323)
Q Consensus 163 ~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i 238 (323)
++...+..|.+++......++..|..|+.... ....++.. .+-.+++-+++. .+-..|+.++..|... ...-..
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~-vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~- 166 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHE-VIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ- 166 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 56777888888889999999999999988664 33333333 566666666654 5777788888888763 222111
Q ss_pred HhcCCHHHHH-HHHhcc--CChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHH
Q 020640 239 GDLGGVSCML-RIIRES--TCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILER 312 (323)
Q Consensus 239 ~~~g~i~~Lv-~ll~~~--~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~ 312 (323)
-+..++ .++..+ ++..+++.|-.+|..+..+-.. ...++.|...+++.+++++.+++....+
T Consensus 167 ----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp--------~~~L~~L~~~~~~~n~r~r~~a~~~~~~ 231 (334)
T KOG2933|consen 167 ----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP--------QKLLRKLIPILQHSNPRVRAKAALCFSR 231 (334)
T ss_pred ----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh--------HHHHHHHHHHHhhhchhhhhhhhccccc
Confidence 123333 333222 2255789999999998886532 1245566677888888888888765443
No 220
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=83.95 E-value=13 Score=36.79 Aligned_cols=131 Identities=11% Similarity=0.169 Sum_probs=84.7
Q ss_pred CCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHH-hcCCHHHHHHHHHHHHHhcCC
Q 020640 73 DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDAL-RSGTIETRSNAAAALFTLSAL 151 (323)
Q Consensus 73 g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll-~~~~~~~~~~a~~~L~~L~~~ 151 (323)
.++|.|..-++ +.+..+|+.++..+-.++..-| ...+... ++|.+-++. +..+..++..++-++..+...
T Consensus 389 ~IlplL~~S~~------~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~-ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~ 459 (700)
T KOG2137|consen 389 KILPLLYRSLE------DSDVQIQELALQILPTVAESID--VPFVKQA-ILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR 459 (700)
T ss_pred HHHHHHHHHhc------CcchhhHHHHHHhhhHHHHhcc--HHHHHHH-HHHHhhcchhcccchHHHHHHHHHHHHHHHH
Confidence 45565555555 7788899999998888876555 3333333 567666654 345778888888888888721
Q ss_pred CCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC
Q 020640 152 DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG 215 (323)
Q Consensus 152 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~ 215 (323)
-.+..+++ -+.++.+..+..++.+....+++..++.........++.+.++|.++.+...+
T Consensus 460 -lD~~~v~d--~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 460 -LDKAAVLD--ELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred -HHHHHhHH--HHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcc
Confidence 11222222 24444555555688888888888887776665544555556888888877765
No 221
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=83.74 E-value=34 Score=31.08 Aligned_cols=161 Identities=19% Similarity=0.163 Sum_probs=104.9
Q ss_pred HHHHHHHhc-CCchhHHHHHHHHHHHhc-cChhhHHHHhhhcC-CHHHHHHhhcccccCCCCC-------HHHHHHHHHH
Q 020640 33 FLSLLKKMS-ATLPDQTEAAKELRLLTK-RMPSFRALFGESHD-AIPQLLSPLSESKCENGIN-------PNLQEDVITT 102 (323)
Q Consensus 33 i~~Lv~~l~-~~~~~~~~a~~~L~~l~~-~~~~~~~~i~~~~g-~i~~Lv~lL~~~~~~~~~~-------~~~~~~a~~~ 102 (323)
++.+-+.|+ ........++..|..++. .+....+.+.+.-+ -.+.+..++.....+.... +.++...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 444555554 335566789999999998 55566666555234 3566777774321100110 3788888886
Q ss_pred HHHhcc-cc-chhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHH-hcCCC----CchhhhhccCChHHHHHHhhhcC
Q 020640 103 LLNLSI-HD-NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFT-LSALD----SNKEVIGKSGALKPLIDLLDEGH 175 (323)
Q Consensus 103 L~~ls~-~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~-L~~~~----~~~~~i~~~g~i~~Lv~lL~~~~ 175 (323)
+..+-. .+ ..+..+....+.+..+.+-+..+++++....+.+|.. +..++ ..|..+.....+..|..+...++
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 665433 22 2577777767778888888888889999999999885 43333 24666677778888888777665
Q ss_pred H----hHHHHHHHHHHHhccCC
Q 020640 176 Q----SAMKDVASAIFNLCITH 193 (323)
Q Consensus 176 ~----~~~~~al~aL~~L~~~~ 193 (323)
+ .+...+-..|..+|.++
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCC
Confidence 5 66777777777776544
No 222
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=83.71 E-value=6.2 Score=28.89 Aligned_cols=91 Identities=10% Similarity=0.169 Sum_probs=61.0
Q ss_pred HHHHHHHHHH-HHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhh
Q 020640 94 NLQEDVITTL-LNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLD 172 (323)
Q Consensus 94 ~~~~~a~~~L-~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~ 172 (323)
+++..|+.-+ ..+...--....+++..+.+..|+.....++......+...+..|..++.....+.+-|+.+.|-++=.
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~ 81 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRP 81 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHh
Confidence 4566665533 344433334444554344667777777888777888999999999999988888888999988766655
Q ss_pred hcCHhHHHHHHH
Q 020640 173 EGHQSAMKDVAS 184 (323)
Q Consensus 173 ~~~~~~~~~al~ 184 (323)
.-++..+...-.
T Consensus 82 ~~~~~~~~~id~ 93 (98)
T PF14726_consen 82 NVEPNLQAEIDE 93 (98)
T ss_pred cCCHHHHHHHHH
Confidence 444544444333
No 223
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=83.33 E-value=24 Score=34.46 Aligned_cols=100 Identities=12% Similarity=0.135 Sum_probs=67.6
Q ss_pred CChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHH
Q 020640 162 GALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIG 239 (323)
Q Consensus 162 g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~ 239 (323)
|.+..++.-+.+++..++..++..|+.+...-......+-.|.+..|..-+-+. .++..|+.+|+.+-..+.+-+-.
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~- 169 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENR- 169 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHH-
Confidence 467777777888899999999999988866544444555556666666655444 67888888888776533222212
Q ss_pred hcCCHHHHHHHHhccCChhHHHHHHH
Q 020640 240 DLGGVSCMLRIIRESTCDRNKENCIA 265 (323)
Q Consensus 240 ~~g~i~~Lv~ll~~~~~~~~~~~a~~ 265 (323)
....|+.+++.++++++++.|+.
T Consensus 170 ---~~n~l~~~vqnDPS~EVRr~all 192 (885)
T COG5218 170 ---IVNLLKDIVQNDPSDEVRRLALL 192 (885)
T ss_pred ---HHHHHHHHHhcCcHHHHHHHHHH
Confidence 23467777877666778876653
No 224
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=82.88 E-value=52 Score=32.60 Aligned_cols=164 Identities=16% Similarity=0.204 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHhccccchhhhhhc-cC--CcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHH
Q 020640 93 PNLQEDVITTLLNLSIHDNNKKLVAE-TP--MVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLID 169 (323)
Q Consensus 93 ~~~~~~a~~~L~~ls~~~~~~~~i~~-~~--g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ 169 (323)
++.+.-|+.+|+-+..+...-..+.. .. .++..++..+. .++..+..++++|.|+-.++.+++.+... ...+..
T Consensus 558 ~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~--~~~i~~ 634 (745)
T KOG0301|consen 558 VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR--LESILD 634 (745)
T ss_pred HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH--HHHHhh
Confidence 45566777777766665543222222 11 12333333333 45778888999999998776666555442 222222
Q ss_pred Hhh---h-cCHhHHHHHHHHHHHhcc--CCchhHHHHhhCchHHHHHHhhcC-------chHHHHHHHHHHHhcCHHHHH
Q 020640 170 LLD---E-GHQSAMKDVASAIFNLCI--THENKARAVRDGGVSVILKKIMDG-------VHVDELLAILAMLSTNHRAVE 236 (323)
Q Consensus 170 lL~---~-~~~~~~~~al~aL~~L~~--~~~~~~~i~~~g~v~~Lv~ll~~~-------~~~~~a~~~L~~l~~~~~~~~ 236 (323)
.+. . ++..+.........|++. ..++- +.|+.+.+...+... +...+.+.+|-+|+..+....
T Consensus 635 ~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~ 710 (745)
T KOG0301|consen 635 PVIEASSLSNKNLQIALATLALNYSVLLIQDNE----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVI 710 (745)
T ss_pred hhhhhhcccchhHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHH
Confidence 221 2 233444433333333322 11111 146666666666532 234566788888888888888
Q ss_pred HHHhcCCHHHHHHHHhccCChhHHHHH
Q 020640 237 EIGDLGGVSCMLRIIRESTCDRNKENC 263 (323)
Q Consensus 237 ~i~~~g~i~~Lv~ll~~~~~~~~~~~a 263 (323)
.+.+.-.++.+++-+++..+.+.....
T Consensus 711 ~~A~~~~v~sia~~~~~~~~~~~~k~~ 737 (745)
T KOG0301|consen 711 QLAKNRSVDSIAKKLKEAVSNPSGKNI 737 (745)
T ss_pred HHHHhcCHHHHHHHHHHhccCchhhHH
Confidence 888877799999988874433333333
No 225
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=82.77 E-value=8.6 Score=30.27 Aligned_cols=72 Identities=6% Similarity=0.095 Sum_probs=57.9
Q ss_pred CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhc-CCHHHHHHHHHHHHHHhc
Q 020640 243 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD-GTARAKRKATGILERLKR 315 (323)
Q Consensus 243 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~A~~~L~~l~~ 315 (323)
++..|.+-++.++ +.++..|+.+|-.+..+-.......+-+.+++..|.+++.. .++.+++++..++..-+.
T Consensus 42 a~ral~krl~~~n-~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 42 AMRALKKRLLSKN-PNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHcCCC-hHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 5677888887654 99999999999998887544455556678999999999875 489999999999988764
No 226
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=82.76 E-value=8.3 Score=30.46 Aligned_cols=72 Identities=8% Similarity=0.142 Sum_probs=58.3
Q ss_pred CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhc-CCHHHHHHHHHHHHHHhc
Q 020640 243 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD-GTARAKRKATGILERLKR 315 (323)
Q Consensus 243 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~A~~~L~~l~~ 315 (323)
++..|.+-+.+. ++.++..|+.+|-.+..+-...+..-+-...++..|.+++.. .++.++++...++...+.
T Consensus 38 a~ral~KRl~~~-n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 38 CLKAIMKRLNHK-DPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 466777777755 499999999999999887765555555577999999999988 699999999999888763
No 227
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=82.23 E-value=24 Score=32.70 Aligned_cols=176 Identities=11% Similarity=0.024 Sum_probs=104.6
Q ss_pred CHHHHHHHHHHHHHhcCCCCc---hhhhhccCChHHHHHHhhh-----------cCHhHHHHHHHHHHHhccCCchhHHH
Q 020640 134 TIETRSNAAAALFTLSALDSN---KEVIGKSGALKPLIDLLDE-----------GHQSAMKDVASAIFNLCITHENKARA 199 (323)
Q Consensus 134 ~~~~~~~a~~~L~~L~~~~~~---~~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~al~aL~~L~~~~~~~~~i 199 (323)
+...+..|-..|.+.-...++ ...+.+ -++.+++.++. .+.++...|+++|..+-.+++....+
T Consensus 6 ~~~~r~daY~~l~~~l~~~~~~~~~~~l~~--k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l 83 (372)
T PF12231_consen 6 DRSSRLDAYMTLNNALKAYDNLPDRQALQD--KMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTL 83 (372)
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhC
Confidence 444555555555555322222 222222 35555555442 15567888999998887666544444
Q ss_pred Hhh---CchHHHHHHhhcC-chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhc----cCChhHHHHHHHHHHHhc
Q 020640 200 VRD---GGVSVILKKIMDG-VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRE----STCDRNKENCIAILHTIC 271 (323)
Q Consensus 200 ~~~---g~v~~Lv~ll~~~-~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~----~~~~~~~~~a~~~L~~L~ 271 (323)
-+. -.+...+..+.++ ..+.-+...|+-++...-..+ +.....+..++..+.. -.+..+....+.++.++.
T Consensus 84 ~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~-~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll 162 (372)
T PF12231_consen 84 SDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPK-IMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLL 162 (372)
T ss_pred ChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCc-ccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHH
Confidence 322 1345566666555 455566666666666432222 3333334444444332 223667888899999999
Q ss_pred ccChHhHHHHHhhcc-cHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640 272 LSDRTKWKAMREEES-THGTISKLAQDGTARAKRKATGILERLKR 315 (323)
Q Consensus 272 ~~~~~~~~~~~~~~~-~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 315 (323)
...|.. +..... +.+.++..+-+....++.+|..++..+..
T Consensus 163 ~q~p~~---M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~ 204 (372)
T PF12231_consen 163 SQFPQQ---MIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKK 204 (372)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 988763 444444 89999999888899999998888877753
No 228
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=81.85 E-value=29 Score=34.61 Aligned_cols=130 Identities=15% Similarity=0.134 Sum_probs=86.7
Q ss_pred CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCC
Q 020640 42 ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPM 121 (323)
Q Consensus 42 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g 121 (323)
+|+..+..|..+|..+.--+-+++ ..-+|.|+..+.. +++|.++.+|+-.|.-++..-. ..++.
T Consensus 908 sd~~lq~aA~l~L~klMClS~~fc------~ehlpllIt~mek-----~p~P~IR~NaVvglgD~~vcfN---~~~de-- 971 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEFC------SEHLPLLITSMEK-----HPIPRIRANAVVGLGDFLVCFN---TTADE-- 971 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHH------HHHHHHHHHHHhh-----CCCcceeccceeeccccceehh---hhhHH--
Confidence 357778888888877764443332 2357888888865 5678888888877776543221 12221
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhcc
Q 020640 122 VIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCI 191 (323)
Q Consensus 122 ~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~ 191 (323)
.-+.|.+-|.+.+..++..|.-++..|-.... +--.|-++.+..+|.+++.++...|--.+..++.
T Consensus 972 ~t~yLyrrL~De~~~V~rtclmti~fLilagq----~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098 972 HTHYLYRRLGDEDADVRRTCLMTIHFLILAGQ----LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHHHHccc----eeeccchhhhHhhccCCcchHHHHHHHHHHHHHh
Confidence 34567777777788888888888888854332 2225667788888888888888777777766654
No 229
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=81.64 E-value=11 Score=29.52 Aligned_cols=72 Identities=10% Similarity=0.156 Sum_probs=57.2
Q ss_pred CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcC-CHH---HHHHHHHHHHHHhc
Q 020640 243 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG-TAR---AKRKATGILERLKR 315 (323)
Q Consensus 243 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~---~~~~A~~~L~~l~~ 315 (323)
++..|.+-|+.++ +.++..|+.+|-.+..+....+...+-...++..|.+++.+. ... +++++..++.....
T Consensus 43 a~~~l~krl~~~~-~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 43 AARALRKRLKHGN-PNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 3567777888654 999999999999999988666666666778999999988765 444 89999888887764
No 230
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=81.29 E-value=8.5 Score=30.29 Aligned_cols=73 Identities=12% Similarity=0.119 Sum_probs=59.2
Q ss_pred hhHHHHHHHHhc-CCchhHHHHHHHHHHHhcc-ChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640 30 RDHFLSLLKKMS-ATLPDQTEAAKELRLLTKR-MPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 107 (323)
Q Consensus 30 ~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls 107 (323)
.+++..+.+.|. .++.++..|+..|-.+.++ .......+.+ .+.++.|+.++.. ..++.++..++..+...+
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas-~~fl~~l~~l~~~-----~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVAS-REFMDELKDLIKT-----TKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhh-HHHHHHHHHHHcc-----cCCHHHHHHHHHHHHHHH
Confidence 368888888885 7789999999999888875 3456677888 8899999999874 357899999999998776
Q ss_pred c
Q 020640 108 I 108 (323)
Q Consensus 108 ~ 108 (323)
.
T Consensus 114 ~ 114 (142)
T cd03569 114 L 114 (142)
T ss_pred H
Confidence 3
No 231
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=81.21 E-value=34 Score=29.35 Aligned_cols=188 Identities=15% Similarity=0.191 Sum_probs=103.6
Q ss_pred CCCHHHHHHHHHHHHHhcccc-chhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHH
Q 020640 90 GINPNLQEDVITTLLNLSIHD-NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLI 168 (323)
Q Consensus 90 ~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv 168 (323)
..+++.+...+..|..++.++ .+... ++..|..+...++.+...-+.+.+..+...++ +.. +.++.++
T Consensus 12 ~~~~~~~~~~L~~L~~l~~~~~~~~~~------v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-r~f----~~L~~~L 80 (234)
T PF12530_consen 12 ISDPELQLPLLEALPSLACHKNVCVPP------VLQTLVSLVEQGSLELRYVALRLLTLLWKAND-RHF----PFLQPLL 80 (234)
T ss_pred CCChHHHHHHHHHHHHHhccCccchhH------HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCc-hHH----HHHHHHH
Confidence 668999999999999999877 33332 34456666667777766667777777754332 111 3444444
Q ss_pred HHh--h------h--cCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHh-hcC--chHHHHHHHHHHHhcCHHHH
Q 020640 169 DLL--D------E--GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKI-MDG--VHVDELLAILAMLSTNHRAV 235 (323)
Q Consensus 169 ~lL--~------~--~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll-~~~--~~~~~a~~~L~~l~~~~~~~ 235 (323)
..+ + + ...+.......++..+|...+++.. ..++.+..+| .+. ..+..++.+|..+|..
T Consensus 81 ~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~----~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~---- 152 (234)
T PF12530_consen 81 LLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGV----DLLPLLSGCLNQSCDEVAQALALEALAPLCEA---- 152 (234)
T ss_pred HHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHH----HHHHHHHHHHhccccHHHHHHHHHHHHHHHHH----
Confidence 441 1 1 1334445556678888887766221 2566777788 444 5678888899999832
Q ss_pred HHHHhc-CCHHHHHHHHhccCChhHHHHHHHHHHHhcccC--hHhHHHHHhhcccHHHHHHHhhcCC
Q 020640 236 EEIGDL-GGVSCMLRIIRESTCDRNKENCIAILHTICLSD--RTKWKAMREEESTHGTISKLAQDGT 299 (323)
Q Consensus 236 ~~i~~~-g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~--~~~~~~~~~~~~~i~~L~~ll~~~~ 299 (323)
.+++- ..-..+...+.....+.+...-+..+..+.... .+.+..+ ...++..+.++..+.+
T Consensus 153 -~vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~--~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 153 -EVVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEEL--KRQILQLLWEYTSSSD 216 (234)
T ss_pred -hhccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHH--HHHHHHHHHhhccccc
Confidence 22221 122333333332222434443333333332222 1223333 3456667777665553
No 232
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=80.76 E-value=9.6 Score=29.58 Aligned_cols=74 Identities=12% Similarity=0.096 Sum_probs=57.2
Q ss_pred hhHHHHHHHHhc-CCchhHHHHHHHHHHHhcc-ChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640 30 RDHFLSLLKKMS-ATLPDQTEAAKELRLLTKR-MPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 107 (323)
Q Consensus 30 ~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls 107 (323)
.+++..|-+.|+ .++.++..|+..|-.+.+. ...+...+.+ ..+++.|..++... ...+.++..++..+...+
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s-~~fl~~L~~l~~~~----~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVAS-KEFLNELVKLIKPK----YPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHh-HHHHHHHHHHHcCC----CCcHHHHHHHHHHHHHHH
Confidence 367788888885 7789999999999988876 3456677777 88999999998853 233459999999988775
Q ss_pred c
Q 020640 108 I 108 (323)
Q Consensus 108 ~ 108 (323)
.
T Consensus 111 ~ 111 (133)
T smart00288 111 D 111 (133)
T ss_pred H
Confidence 4
No 233
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.20 E-value=17 Score=32.45 Aligned_cols=140 Identities=19% Similarity=0.198 Sum_probs=86.8
Q ss_pred hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640 31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 109 (323)
Q Consensus 31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~ 109 (323)
.++...++.|+ +++..++.++..|+.++...++....... ..|-.+++-++ .....+...|+.++..+...
T Consensus 88 ~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~--~vii~vvkslK------NlRS~VsraA~~t~~difs~ 159 (334)
T KOG2933|consen 88 AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH--EVIIAVVKSLK------NLRSAVSRAACMTLADIFSS 159 (334)
T ss_pred HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHhc------ChHHHHHHHHHHHHHHHHHH
Confidence 35556677774 66888999999999999876655444333 35666677676 44567888888888776543
Q ss_pred cchhhhhhccCCcHHHHHHHHhc---CCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHH
Q 020640 110 DNNKKLVAETPMVIPLLMDALRS---GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAI 186 (323)
Q Consensus 110 ~~~~~~i~~~~g~i~~Lv~ll~~---~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL 186 (323)
-++...- +.. ..+..++.. .+.-+++.|-.+|..+..+.... -+++.|...++..++.++..+..+.
T Consensus 160 ln~~i~~-~ld---~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~~n~r~r~~a~~~~ 229 (334)
T KOG2933|consen 160 LNNSIDQ-ELD---DLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQHSNPRVRAKAALCF 229 (334)
T ss_pred HHHHHHH-HHH---HHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhhhchhhhhhhhccc
Confidence 2221111 111 222333322 34567788888888886544322 2466777778887887777776654
Q ss_pred HH
Q 020640 187 FN 188 (323)
Q Consensus 187 ~~ 188 (323)
.+
T Consensus 230 ~~ 231 (334)
T KOG2933|consen 230 SR 231 (334)
T ss_pred cc
Confidence 43
No 234
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=79.41 E-value=22 Score=28.56 Aligned_cols=139 Identities=15% Similarity=0.190 Sum_probs=74.3
Q ss_pred cHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHH
Q 020640 122 VIPLLMDALRSG-TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAV 200 (323)
Q Consensus 122 ~i~~Lv~ll~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~ 200 (323)
.++.|+++++.+ +..++..++++|..|-.-|..+.+....+. +.-. -.+.+.......+ .+.... ..-.+..
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~-~~~~--~~~~~~~~~~~~l---~~~~~~-~~~ee~y 83 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL-DSKS--SENSNDESTDISL---PMMGIS-PSSEEYY 83 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC-Cccc--cccccccchhhHH---hhccCC-CchHHHH
Confidence 566788888865 689999999999999776766665433211 1000 0011111111111 111111 1122222
Q ss_pred hhCchHHHHHHhhcC---chHHHHHHHHHHHhcC--HHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHh
Q 020640 201 RDGGVSVILKKIMDG---VHVDELLAILAMLSTN--HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTI 270 (323)
Q Consensus 201 ~~g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L 270 (323)
-..++..|+++|++. .....++.++.++-.. ..+...+- .+++.+++.++..+ +..++.-..-|..|
T Consensus 84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~--~viP~~l~~i~~~~-~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLP--QVIPIFLRVIRTCP-DSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHH--HHhHHHHHHHHhCC-HHHHHHHHHHHHHH
Confidence 223677888888876 2334556666555532 23322222 35888888888654 56666655555544
No 235
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=79.23 E-value=61 Score=31.02 Aligned_cols=93 Identities=9% Similarity=0.044 Sum_probs=58.2
Q ss_pred chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhcc-----CChhHHHHHHHHHHHhcccChHhHHHHHhhcc--cH
Q 020640 216 VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRES-----TCDRNKENCIAILHTICLSDRTKWKAMREEES--TH 288 (323)
Q Consensus 216 ~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~-----~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~--~i 288 (323)
.....+..++.||+...-+.. ++..|..+|.+. .+..+.+.|+..+..+.....+.....+...- .+
T Consensus 230 ~l~~~~w~~m~nL~~S~~g~~------~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl 303 (464)
T PF11864_consen 230 SLCKPSWRTMRNLLKSHLGHS------AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVL 303 (464)
T ss_pred ccchhHHHHHHHHHcCccHHH------HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHH
Confidence 456667777777776543322 356777888321 12445678888888887776332222333334 78
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHh
Q 020640 289 GTISKLAQDGTARAKRKATGILERLK 314 (323)
Q Consensus 289 ~~L~~ll~~~~~~~~~~A~~~L~~l~ 314 (323)
+.|..-++.+++.+-.....++..+-
T Consensus 304 ~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 304 PSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 88888888877777666666665554
No 236
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=78.67 E-value=5.8 Score=28.66 Aligned_cols=71 Identities=15% Similarity=0.148 Sum_probs=54.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCc
Q 020640 123 IPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHE 194 (323)
Q Consensus 123 i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~ 194 (323)
....+..+.++.+.++.++...|..|....+ ...+-..+++..+...|++++.-+-.+|+..|..|+...+
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence 4456667788889999999999999976555 2222225677788888888888999999999999977554
No 237
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=78.55 E-value=46 Score=29.20 Aligned_cols=178 Identities=12% Similarity=0.088 Sum_probs=95.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCC-CCchhhhhccCChHHHHHHhhh--cCHhHHHHHHHHHHHhccCCchhHHHHhhCc
Q 020640 128 DALRSGTIETRSNAAAALFTLSAL-DSNKEVIGKSGALKPLIDLLDE--GHQSAMKDVASAIFNLCITHENKARAVRDGG 204 (323)
Q Consensus 128 ~ll~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~ 204 (323)
..|.++++..+..+...|..+... +... ....-+..|++...+ ++......++.+|..|......... .
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~-----~ 77 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPE-----S 77 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChh-----h
Confidence 456788899999999988887532 2211 222236677776554 3566666667777666543321111 1
Q ss_pred hHHHHHHhh-cC-------chHHHHHHHHHHHhcCHHHHHHHHhc--CCHHHHHHHHhccCChhHHHHHHHHHHHhcccC
Q 020640 205 VSVILKKIM-DG-------VHVDELLAILAMLSTNHRAVEEIGDL--GGVSCMLRIIRESTCDRNKENCIAILHTICLSD 274 (323)
Q Consensus 205 v~~Lv~ll~-~~-------~~~~~a~~~L~~l~~~~~~~~~i~~~--g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~ 274 (323)
...+++.+. +- ..|..+..+|..+..+ .+..+.+. +.+..+++.+....+|+--..+..++..+...-
T Consensus 78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~--~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~ 155 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN--HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEF 155 (262)
T ss_pred HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH--hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence 222222221 11 3455566666655543 22222222 245555665554344554444444444432211
Q ss_pred h--HhHHHHHh---------------------------------------hcccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 020640 275 R--TKWKAMRE---------------------------------------EESTHGTISKLAQDGTARAKRKATGILERL 313 (323)
Q Consensus 275 ~--~~~~~~~~---------------------------------------~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l 313 (323)
+ +...++++ ..-+++.|++-+.++++.+|.-+..+|..+
T Consensus 156 ~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c 235 (262)
T PF14500_consen 156 DISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKAC 235 (262)
T ss_pred ccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 1 00111111 235788888889999999999999998887
Q ss_pred hc
Q 020640 314 KR 315 (323)
Q Consensus 314 ~~ 315 (323)
..
T Consensus 236 ~~ 237 (262)
T PF14500_consen 236 IE 237 (262)
T ss_pred HH
Confidence 75
No 238
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=77.27 E-value=18 Score=27.99 Aligned_cols=75 Identities=20% Similarity=0.236 Sum_probs=58.0
Q ss_pred hhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChh-hHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640 30 RDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPS-FRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 107 (323)
Q Consensus 30 ~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls 107 (323)
.+++..|-+.|+ +++.++..|+..|-.+.+.... +...+.+ ...+..|+.++... . ..++.++..++..+...+
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s-~~fl~~l~~l~~~~-~--~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVAD-KEFLLELVKIAKNS-P--KYDPKVREKALELILAWS 111 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhh-HHHHHHHHHHhCCC-C--CCCHHHHHHHHHHHHHHH
Confidence 367788888885 6788999999999988876654 5666777 77888899998742 1 347899999999998875
Q ss_pred c
Q 020640 108 I 108 (323)
Q Consensus 108 ~ 108 (323)
.
T Consensus 112 ~ 112 (133)
T cd03561 112 E 112 (133)
T ss_pred H
Confidence 4
No 239
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=77.07 E-value=73 Score=32.81 Aligned_cols=175 Identities=14% Similarity=0.110 Sum_probs=101.0
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhh-hcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHH
Q 020640 132 SGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLD-EGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILK 210 (323)
Q Consensus 132 ~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ 210 (323)
+.+-.-+..++.-+................|.+-.+++... +.+..+...++.+|..++..-..-..=...++.+.++.
T Consensus 264 s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld 343 (815)
T KOG1820|consen 264 SKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLD 343 (815)
T ss_pred ccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHH
Confidence 34444455555555555443330111111333344444332 33667777788888887764432233333467888888
Q ss_pred HhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChH--hHHHHHhhcc
Q 020640 211 KIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT--KWKAMREEES 286 (323)
Q Consensus 211 ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~--~~~~~~~~~~ 286 (323)
.+.+. .+++.++.++-.++.. -.-....+.+..+++++. +..+..+...+......... ..+..+ ..
T Consensus 344 ~lkekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~kn-p~~k~~~~~~l~r~~~~~~~~~~~~~t~--~~ 414 (815)
T KOG1820|consen 344 RLKEKKSELRDALLKALDAILNS------TPLSKMSEAILEALKGKN-PQIKGECLLLLDRKLRKLGPKTVEKETV--KT 414 (815)
T ss_pred HhhhccHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHHHhhcCCcCcchhhH--HH
Confidence 88765 5666666655555441 011134566777888654 88888877777766654431 122232 36
Q ss_pred cHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640 287 THGTISKLAQDGTARAKRKATGILERLKR 315 (323)
Q Consensus 287 ~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 315 (323)
.++.++....+.+..++..|..++.-+.+
T Consensus 415 l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 415 LVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred HhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 77777777777788998888877766554
No 240
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=76.77 E-value=63 Score=29.92 Aligned_cols=144 Identities=10% Similarity=0.034 Sum_probs=79.6
Q ss_pred hccCChHHHHHHhhh-cCHhHHHHHHHHHHHhccCCchh-HHHHhhCchHHHHHHhh-cC----chHHHHHHHHHHHhcC
Q 020640 159 GKSGALKPLIDLLDE-GHQSAMKDVASAIFNLCITHENK-ARAVRDGGVSVILKKIM-DG----VHVDELLAILAMLSTN 231 (323)
Q Consensus 159 ~~~g~i~~Lv~lL~~-~~~~~~~~al~aL~~L~~~~~~~-~~i~~~g~v~~Lv~ll~-~~----~~~~~a~~~L~~l~~~ 231 (323)
.+..-.+-+-+-+.. +...-+..|...|..|+...+.. ..++. +.+..++.-.. ++ .-++.|+..+..++..
T Consensus 207 fEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~-~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k 285 (370)
T PF08506_consen 207 FEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILM-QYIQQLLQQYASNPSNNWRSKDGALYLIGALASK 285 (370)
T ss_dssp HHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBS
T ss_pred HccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhh
Confidence 333334444333332 34567888999999998643221 12221 23333332211 22 3577788888888874
Q ss_pred HHH-------------HHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcC
Q 020640 232 HRA-------------VEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG 298 (323)
Q Consensus 232 ~~~-------------~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~ 298 (323)
... -..|...-+++.|. -..+..+-++-.|++.+...-..-+. +.+ .+.++.++.++.++
T Consensus 286 ~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~--~~~~~~piLka~aik~~~~Fr~~l~~---~~l--~~~~~~l~~~L~~~ 358 (370)
T PF08506_consen 286 GSTTKSGVTQTNELVDVVDFFSQHVLPELQ--PDVNSHPILKADAIKFLYTFRNQLPK---EQL--LQIFPLLVNHLQSS 358 (370)
T ss_dssp S--BTTB-S-B-TTS-HHHHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGGS-H---HHH--HHHHHHHHHHTTSS
T ss_pred hccccCCcccccccccHHHHHHHHhHHHhc--ccCCCCcchHHHHHHHHHHHHhhCCH---HHH--HHHHHHHHHHhCCC
Confidence 321 22333333333333 11122266788899988888776543 333 36999999999999
Q ss_pred CHHHHHHHHHHH
Q 020640 299 TARAKRKATGIL 310 (323)
Q Consensus 299 ~~~~~~~A~~~L 310 (323)
+..+..+|+.++
T Consensus 359 ~~vv~tyAA~~i 370 (370)
T PF08506_consen 359 SYVVHTYAAIAI 370 (370)
T ss_dssp -HHHHHHHHHHH
T ss_pred CcchhhhhhhhC
Confidence 999999998764
No 241
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.63 E-value=91 Score=31.64 Aligned_cols=30 Identities=13% Similarity=-0.017 Sum_probs=19.0
Q ss_pred ccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640 286 STHGTISKLAQDGTARAKRKATGILERLKR 315 (323)
Q Consensus 286 ~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 315 (323)
..+.-..+...=.+.-++..|..+|.++..
T Consensus 466 kyir~iyNRviLEn~ivRaaAv~alaKfg~ 495 (865)
T KOG1078|consen 466 KYIRFIYNRVILENAIVRAAAVSALAKFGA 495 (865)
T ss_pred hhhHHHhhhhhhhhhhhHHHHHHHHHHHhc
Confidence 344444444444577778888888877763
No 242
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=76.50 E-value=16 Score=28.32 Aligned_cols=72 Identities=8% Similarity=0.114 Sum_probs=56.1
Q ss_pred CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcC-C-HHHHHHHHHHHHHHhc
Q 020640 243 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG-T-ARAKRKATGILERLKR 315 (323)
Q Consensus 243 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~-~~~~~~A~~~L~~l~~ 315 (323)
++..|.+-++.++ +.++..|+.+|-.+..+....+...+...+++..|..++... + +.+++++..++..-..
T Consensus 38 a~r~l~krl~~~n-~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKN-PHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 3566777777554 999999999999998886555656666788999999998775 3 4499999988887664
No 243
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=76.11 E-value=28 Score=25.49 Aligned_cols=95 Identities=12% Similarity=0.040 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHH
Q 020640 45 PDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIP 124 (323)
Q Consensus 45 ~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~ 124 (323)
++|+.|+..|..=-.+.--....+.+....+..|++... .+.......++..|..+..++.....+.+-| +.+
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFn------f~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG-~~~ 74 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFN------FPPVPMKEEVLALLLRLLKSPYAAQILRDIG-AVR 74 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhC------CCCCccHHHHHHHHHHHHhCcHHHHHHHHcc-HHH
Confidence 456666655543332222222233321444455555444 4556678889999999998888877777765 687
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 020640 125 LLMDALRSGTIETRSNAAAALF 146 (323)
Q Consensus 125 ~Lv~ll~~~~~~~~~~a~~~L~ 146 (323)
.|-++-+.-++..+...-.++-
T Consensus 75 fL~klr~~~~~~~~~~id~il~ 96 (98)
T PF14726_consen 75 FLSKLRPNVEPNLQAEIDEILD 96 (98)
T ss_pred HHHHHHhcCCHHHHHHHHHHHh
Confidence 7666655556666655554443
No 244
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=75.64 E-value=21 Score=31.16 Aligned_cols=63 Identities=21% Similarity=0.246 Sum_probs=49.1
Q ss_pred cCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 020640 72 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLS 149 (323)
Q Consensus 72 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~ 149 (323)
...|+.|.+.|... .+++-++..|+.+|..++.. .+++.|...+.++.+-+++.|..+|-.+.
T Consensus 217 ~~ai~~L~k~L~d~----~E~pMVRhEaAeALGaIa~e-----------~~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 217 PAAIPSLIKVLLDE----TEHPMVRHEAAEALGAIADE-----------DCVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred hhhhHHHHHHHHhh----hcchHHHHHHHHHHHhhcCH-----------HHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 44689999988754 56889999999999988752 25777778888877778888877776664
No 245
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=75.01 E-value=12 Score=26.99 Aligned_cols=70 Identities=16% Similarity=0.144 Sum_probs=50.6
Q ss_pred hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640 31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 109 (323)
Q Consensus 31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~ 109 (323)
......++.+. ..+.+|-.++..|+++..... .......+++..+...|+ ++++-+--+|...|..|+..
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~------d~DsyVYL~aI~~L~~La~~ 73 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLK------DEDSYVYLNAIKGLAALADR 73 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcC------CCCchHHHHHHHHHHHHHHH
Confidence 45677777786 447899999999999997554 122221345666666667 77888999999999988753
No 246
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=74.94 E-value=19 Score=28.19 Aligned_cols=72 Identities=11% Similarity=0.138 Sum_probs=55.9
Q ss_pred CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhc------CCHHHHHHHHHHHHHHhc
Q 020640 243 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD------GTARAKRKATGILERLKR 315 (323)
Q Consensus 243 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~------~~~~~~~~A~~~L~~l~~ 315 (323)
++..|.+-+.+.+ +.++..|+.+|-.+..+-...+...+-..+++..|++++.. .+..++++...++..-..
T Consensus 39 a~rai~krl~~~n-~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKIQSPQ-EKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4677777787554 88999999999998886655455555567899999999853 478999999888877653
No 247
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=74.72 E-value=29 Score=32.02 Aligned_cols=79 Identities=14% Similarity=0.066 Sum_probs=59.0
Q ss_pred chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCCh-hHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHH
Q 020640 216 VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCD-RNKENCIAILHTICLSDRTKWKAMREEESTHGTISKL 294 (323)
Q Consensus 216 ~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~-~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~l 294 (323)
..+..++--|+.-+.+++-+..|..+|.++.+++.+.+..++ ..-..++.+++-++.+... ..++.+..+...++++
T Consensus 37 s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~--~~l~~~~~~~~ll~~L 114 (361)
T PF07814_consen 37 SVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLN--MHLLLDRDSLRLLLKL 114 (361)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcc--hhhhhchhHHHHHHHH
Confidence 567788888888888999999999999999999999654434 4455566666666666643 3555566777777888
Q ss_pred hh
Q 020640 295 AQ 296 (323)
Q Consensus 295 l~ 296 (323)
+.
T Consensus 115 l~ 116 (361)
T PF07814_consen 115 LK 116 (361)
T ss_pred hc
Confidence 77
No 248
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=74.48 E-value=65 Score=28.91 Aligned_cols=126 Identities=12% Similarity=0.176 Sum_probs=84.7
Q ss_pred hhhhccCChHHHHHHhhh-----------------------cCHhHHHHHHHHHHHhccCCchhHHHH------------
Q 020640 156 EVIGKSGALKPLIDLLDE-----------------------GHQSAMKDVASAIFNLCITHENKARAV------------ 200 (323)
Q Consensus 156 ~~i~~~g~i~~Lv~lL~~-----------------------~~~~~~~~al~aL~~L~~~~~~~~~i~------------ 200 (323)
..+.+.|.||.|-++++. ++...+..-++.+.++|..+.++..+.
T Consensus 3 ~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~ 82 (303)
T PF12463_consen 3 TRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESEL 82 (303)
T ss_pred HHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCccccccc
Confidence 345667888888877752 012467788999999998664433221
Q ss_pred ----------hhCchHHHHHHhhcC----chHHHHHHHHHHHhcC---HHHHHHHHhcCCHHHHHHHHhccCC--hhHHH
Q 020640 201 ----------RDGGVSVILKKIMDG----VHVDELLAILAMLSTN---HRAVEEIGDLGGVSCMLRIIRESTC--DRNKE 261 (323)
Q Consensus 201 ----------~~g~v~~Lv~ll~~~----~~~~~a~~~L~~l~~~---~~~~~~i~~~g~i~~Lv~ll~~~~~--~~~~~ 261 (323)
+.|.+..+++.+... ..+-.-+.++...... ..-+..+.+.|.++.++..+-++.+ ..+-+
T Consensus 83 ~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q 162 (303)
T PF12463_consen 83 NSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQ 162 (303)
T ss_pred cccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHH
Confidence 236677777777644 3454555556666654 2455667888999999987765432 45788
Q ss_pred HHHHHHHHhcccChHhHHHH
Q 020640 262 NCIAILHTICLSDRTKWKAM 281 (323)
Q Consensus 262 ~a~~~L~~L~~~~~~~~~~~ 281 (323)
.....|..|...+......+
T Consensus 163 ~~FDLLGELiK~n~~~f~~l 182 (303)
T PF12463_consen 163 SNFDLLGELIKFNRDAFQRL 182 (303)
T ss_pred HHHHHHHHHHCCCHHHHHHH
Confidence 89999999999997654443
No 249
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=74.06 E-value=60 Score=35.39 Aligned_cols=104 Identities=14% Similarity=0.202 Sum_probs=64.4
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCC-chhHHH
Q 020640 121 MVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITH-ENKARA 199 (323)
Q Consensus 121 g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~-~~~~~i 199 (323)
+++..++..+..+...++..|+++|.++..-++. .+....+-...-.-+.+.+..+++.|+..+....... +...+.
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~--vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qy 893 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPS--VLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQY 893 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChH--hhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHH
Confidence 3566677777777788888888888888754431 1111223333444455567788888888887654332 222222
Q ss_pred HhhCchHHHHH-HhhcC-chHHHHHHHHHHHhcC
Q 020640 200 VRDGGVSVILK-KIMDG-VHVDELLAILAMLSTN 231 (323)
Q Consensus 200 ~~~g~v~~Lv~-ll~~~-~~~~~a~~~L~~l~~~ 231 (323)
.+ .+.+ ++++| .+++.+..+++.+|..
T Consensus 894 Y~-----~i~erIlDtgvsVRKRvIKIlrdic~e 922 (1692)
T KOG1020|consen 894 YD-----QIIERILDTGVSVRKRVIKILRDICEE 922 (1692)
T ss_pred HH-----HHHhhcCCCchhHHHHHHHHHHHHHHh
Confidence 22 2333 33344 6899999999999983
No 250
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=74.02 E-value=4.1 Score=27.97 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=25.5
Q ss_pred hHHHHHHcCCCCCCCCCCCCccccchhhhhHHHHHHHHh
Q 020640 2 ISQWCRSQGIELPNSVQYINEEGITEADRDHFLSLLKKM 40 (323)
Q Consensus 2 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lv~~l 40 (323)
|++|+.+++.++|.+.++.......++ ..+...++.+
T Consensus 31 I~~~l~~~~~~~P~t~~~l~~~~l~pn--~~Lk~~I~~~ 67 (73)
T PF04564_consen 31 IERWLEQNGGTDPFTRQPLSESDLIPN--RALKSAIEEW 67 (73)
T ss_dssp HHHHHCTTSSB-TTT-SB-SGGGSEE---HHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCCcCCcccceEC--HHHHHHHHHH
Confidence 799999999999999999998777776 4455555444
No 251
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=73.63 E-value=62 Score=31.79 Aligned_cols=109 Identities=13% Similarity=0.088 Sum_probs=72.5
Q ss_pred hhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCC
Q 020640 114 KLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITH 193 (323)
Q Consensus 114 ~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~ 193 (323)
..+++ |.+..+++-+.+++..++..++.+|.-+...-.........|.+..|.+-+-+..+.++..|..+|..+-...
T Consensus 86 ~~~V~--~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~ 163 (885)
T COG5218 86 EELVA--GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEME 163 (885)
T ss_pred hHHHH--HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcc
Confidence 55665 3677777777888999999999999998754433444455677778887777778889999999998775433
Q ss_pred chhHHHHhhCchHHHHHHhhcC---chHHHHHHHHHHHhcC
Q 020640 194 ENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTN 231 (323)
Q Consensus 194 ~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~ 231 (323)
.+-... ....|+.+++.+ +++..| |.|+..+
T Consensus 164 ~neen~----~~n~l~~~vqnDPS~EVRr~a---llni~vd 197 (885)
T COG5218 164 LNEENR----IVNLLKDIVQNDPSDEVRRLA---LLNISVD 197 (885)
T ss_pred CChHHH----HHHHHHHHHhcCcHHHHHHHH---HHHeeeC
Confidence 322222 223566677654 344443 3455544
No 252
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=73.07 E-value=1.1e+02 Score=30.95 Aligned_cols=121 Identities=9% Similarity=0.118 Sum_probs=70.6
Q ss_pred cCChHHHHHH-hhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC---chHHHHHHHHHHHhcCHHHHH
Q 020640 161 SGALKPLIDL-LDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHRAVE 236 (323)
Q Consensus 161 ~g~i~~Lv~l-L~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~~~~~~ 236 (323)
.++|..|+.. .++.+.++++.|.-+|.-++..+.. ..+..+.+|.+. .++.-++.+|---|.+.-.+.
T Consensus 553 nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~--------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e 624 (929)
T KOG2062|consen 553 NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE--------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE 624 (929)
T ss_pred hhhHHHhhcccccccchHHHHHHHHHheeeEecChh--------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH
Confidence 4566677766 4455788888888888766655432 334556666654 567777777776666544443
Q ss_pred HHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcC
Q 020640 237 EIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG 298 (323)
Q Consensus 237 ~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~ 298 (323)
.+ ..|=.+..+ ..+.+++.|+-++..+.....+....-+ .++...+.+.+.+.
T Consensus 625 Ai------~lLepl~~D-~~~fVRQgAlIa~amIm~Q~t~~~~pkv--~~frk~l~kvI~dK 677 (929)
T KOG2062|consen 625 AI------NLLEPLTSD-PVDFVRQGALIALAMIMIQQTEQLCPKV--NGFRKQLEKVINDK 677 (929)
T ss_pred HH------HHHhhhhcC-hHHHHHHHHHHHHHHHHHhcccccCchH--HHHHHHHHHHhhhh
Confidence 32 222233343 3377888888877777554433222222 35566666666443
No 253
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=72.84 E-value=81 Score=34.51 Aligned_cols=110 Identities=11% Similarity=0.099 Sum_probs=68.1
Q ss_pred hHHHHHHHHhcCC-chhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh-cc
Q 020640 31 DHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL-SI 108 (323)
Q Consensus 31 ~~i~~Lv~~l~~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l-s~ 108 (323)
..+..++..+.++ ...|-+|+.+|.++...++... .. ..+-..+-.-+. +....+++.|+..+... ..
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL---~~-~dvq~~Vh~R~~------DssasVREAaldLvGrfvl~ 885 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVL---SR-PDVQEAVHGRLN------DSSASVREAALDLVGRFVLS 885 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh---cC-HHHHHHHHHhhc------cchhHHHHHHHHHHhhhhhc
Confidence 3445556666533 6789999999999997766432 11 222222333333 55679999999999743 23
Q ss_pred ccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchh
Q 020640 109 HDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKE 156 (323)
Q Consensus 109 ~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~ 156 (323)
.++...++ ...++.=+.+....++++++++++.++...++-.
T Consensus 886 ~~e~~~qy------Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~ 927 (1692)
T KOG1020|consen 886 IPELIFQY------YDQIIERILDTGVSVRKRVIKILRDICEETPDFS 927 (1692)
T ss_pred cHHHHHHH------HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChh
Confidence 33222222 3344455566778899999999999986554433
No 254
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=72.70 E-value=75 Score=28.84 Aligned_cols=152 Identities=13% Similarity=0.103 Sum_probs=103.4
Q ss_pred HHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc-ccc-hhhhhhc-cCCcHHHHHHHHhcC-----C--------HHHH
Q 020640 75 IPQLLSPLSESKCENGINPNLQEDVITTLLNLSI-HDN-NKKLVAE-TPMVIPLLMDALRSG-----T--------IETR 138 (323)
Q Consensus 75 i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~-~~~-~~~~i~~-~~g~i~~Lv~ll~~~-----~--------~~~~ 138 (323)
+..+-+.|. +....+...++..|.++.. +.. ....+.. -+--.+.+.+++... . +.++
T Consensus 58 ~k~lyr~L~------~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR 131 (330)
T PF11707_consen 58 LKLLYRSLS------SSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIR 131 (330)
T ss_pred HHHHHHHhC------cCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHH
Confidence 666677777 5567788899999998876 432 3333333 222234556665221 1 2777
Q ss_pred HHHHHHHHHhcCCC--Cchhhhhc-cCChHHHHHHhhhcCHhHHHHHHHHHHH-hccCC----chhHHHHhhCchHHHHH
Q 020640 139 SNAAAALFTLSALD--SNKEVIGK-SGALKPLIDLLDEGHQSAMKDVASAIFN-LCITH----ENKARAVRDGGVSVILK 210 (323)
Q Consensus 139 ~~a~~~L~~L~~~~--~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~al~aL~~-L~~~~----~~~~~i~~~g~v~~Lv~ 210 (323)
...+..+..+.... ..+..+.+ .+.+..+++-|..++.++....+.+|+. +..+. ..|..+.....+..|..
T Consensus 132 ~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~ 211 (330)
T PF11707_consen 132 TNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLAS 211 (330)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHH
Confidence 78888777775433 34666655 7778999999999999999999999985 33333 24555666678888888
Q ss_pred HhhcC------chHHHHHHHHHHHhcCH
Q 020640 211 KIMDG------VHVDELLAILAMLSTNH 232 (323)
Q Consensus 211 ll~~~------~~~~~a~~~L~~l~~~~ 232 (323)
+.... .+.+.+-..|..+|.++
T Consensus 212 Ly~~~~~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 212 LYSRDGEDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred HhcccCCcccchHHHHHHHHHHHHhcCC
Confidence 77643 45888999999999764
No 255
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=72.12 E-value=29 Score=27.21 Aligned_cols=77 Identities=14% Similarity=0.172 Sum_probs=57.8
Q ss_pred hHHHHHHHHhc-CCchhHHHHHHHHHHHhccC-hhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc
Q 020640 31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRM-PSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 108 (323)
Q Consensus 31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~ 108 (323)
+++..+.+.++ .++.++..|+..|-.+.+.- ..+...+.+ .+++..|++++.....+...++.++...+..+...+.
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas-~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGK-FRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHh-HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 68888889995 67889999998888888633 345677887 8899999999963110013578999999999987753
No 256
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.09 E-value=52 Score=31.42 Aligned_cols=140 Identities=15% Similarity=0.160 Sum_probs=82.9
Q ss_pred chhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhh--hhccCC
Q 020640 44 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKL--VAETPM 121 (323)
Q Consensus 44 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~--i~~~~g 121 (323)
...|..|++.|.|.+..-++-...... -.+..++.-|.. ..+.+++-.+...|..+.....+... +.- +
T Consensus 272 a~~r~~a~r~L~~~as~~P~kv~th~~--~~ldaii~gL~D-----~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l-~- 342 (533)
T KOG2032|consen 272 AKSRGMACRGLGNTASGAPDKVRTHKT--TQLDAIIRGLYD-----DLNEEVQLEAMKCLTMVLEKASNDDLESYLL-N- 342 (533)
T ss_pred hHHHHHHHHHHHHHhccCcHHHHHhHH--HHHHHHHHHHhc-----CCccHHHHHHHHHHHHHHHhhhhcchhhhch-h-
Confidence 456778999999999875654444333 345566655553 44678888888888776543333221 111 1
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC--Cchhhhhc--cCChHHHHHHhhhcCHhHHHHHHHHHHHhccCC
Q 020640 122 VIPLLMDALRSGTIETRSNAAAALFTLSALD--SNKEVIGK--SGALKPLIDLLDEGHQSAMKDVASAIFNLCITH 193 (323)
Q Consensus 122 ~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~--~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~ 193 (323)
+.-.+..+..+.+++.+..+..++..|+... ..+..+.+ .+...+++-.|.+.++.+.. |++.....|.-+
T Consensus 343 ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-ACr~~~~~c~p~ 417 (533)
T KOG2032|consen 343 IALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-ACRSELRTCYPN 417 (533)
T ss_pred HHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH-HHHHHHHhcCch
Confidence 2334666778889999999988888887433 33333332 33344455555665654444 445444444444
No 257
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=71.00 E-value=23 Score=27.91 Aligned_cols=72 Identities=14% Similarity=0.207 Sum_probs=57.9
Q ss_pred hHHHHHHHHhc-CCchhHHHHHHHHHHHhccCh-hhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc
Q 020640 31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMP-SFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 108 (323)
Q Consensus 31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~ 108 (323)
+++..|.+.+. .++.++..|+..|-.+.+.-. .....+.+ ..++..|++++.. ..++.++..++..+...+.
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas-k~Fl~eL~kl~~~-----~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVAS-RDFTQELKKLIND-----RVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhh-HHHHHHHHHHhcc-----cCCHHHHHHHHHHHHHHHH
Confidence 68888888885 778999999999988886544 34556777 8899999999984 2578999999999988763
No 258
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.84 E-value=1.4e+02 Score=31.17 Aligned_cols=255 Identities=15% Similarity=0.110 Sum_probs=131.2
Q ss_pred HHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhccccc--CCCCCHHHHHHHHHHHHHhcc----ccchhhhhhccCC
Q 020640 48 TEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKC--ENGINPNLQEDVITTLLNLSI----HDNNKKLVAETPM 121 (323)
Q Consensus 48 ~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~--~~~~~~~~~~~a~~~L~~ls~----~~~~~~~i~~~~g 121 (323)
..|...+..++++- .+..+ .+.++-+++.|.++.+ .+..++.-...|+.++.+++. ....+..+ +.-
T Consensus 390 ~Aa~~~l~~~~~KR--~ke~l---~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~m-E~f- 462 (1010)
T KOG1991|consen 390 TAALDFLTTLVSKR--GKETL---PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQM-EYF- 462 (1010)
T ss_pred HHHHHHHHHHHHhc--chhhh---hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHH-HHH-
Confidence 44666666666532 12222 2567777888864321 013456677778888887762 11122222 211
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CCCchhhhhccCChHHHHHHhh-hcCHhHHHHHHHHHHHhccCCchhHH-
Q 020640 122 VIPLLMDALRSGTIETRSNAAAALFTLSA-LDSNKEVIGKSGALKPLIDLLD-EGHQSAMKDVASAIFNLCITHENKAR- 198 (323)
Q Consensus 122 ~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~al~aL~~L~~~~~~~~~- 198 (323)
++..++-.++++..-.+.+||+++..++. .-.+...+ ..+++...+.|. +.+-.++..|+-||..+-.+.+....
T Consensus 463 lv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~ 540 (1010)
T KOG1991|consen 463 LVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEK 540 (1010)
T ss_pred HHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhh
Confidence 33444456678888899999999999983 22222222 235666677666 66788999999999999887764433
Q ss_pred HHhh--CchHHHHHHhhcC--c-hHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhc----c-CChhHHHHHHHHH
Q 020640 199 AVRD--GGVSVILKKIMDG--V-HVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRE----S-TCDRNKENCIAIL 267 (323)
Q Consensus 199 i~~~--g~v~~Lv~ll~~~--~-~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~----~-~~~~~~~~a~~~L 267 (323)
+-.+ +.++.|+.+.++- + +....=.+++..+.. ......+.+ .......+++.. + .++.-...|.++|
T Consensus 541 ~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL 619 (1010)
T KOG1991|consen 541 VSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGIL 619 (1010)
T ss_pred HhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHH
Confidence 3332 3444455555432 1 111111111121110 112222222 234455555552 1 1133344555555
Q ss_pred HHhc------ccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 020640 268 HTIC------LSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK 314 (323)
Q Consensus 268 ~~L~------~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~ 314 (323)
..+. ...+...+.+ +.-+.+..-.++++.-.+.-+.+..+...+.
T Consensus 620 ~Ti~Til~s~e~~p~vl~~l--e~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t 670 (1010)
T KOG1991|consen 620 RTISTILLSLENHPEVLKQL--EPIVLPVIGFILKNDITDFYEELLEIVSSLT 670 (1010)
T ss_pred HHHHHHHHHHhccHHHHHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHhhhh
Confidence 4442 1222222233 3445555555666666666666655555544
No 259
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=70.68 E-value=1.3e+02 Score=30.58 Aligned_cols=64 Identities=14% Similarity=0.137 Sum_probs=41.7
Q ss_pred CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 020640 243 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK 314 (323)
Q Consensus 243 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~ 314 (323)
..+..|.+|.++.++.++-.++.+|.-.|..... ++ ++..|-.+..+..+-+++-|.-++..+.
T Consensus 589 ~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~--~e------Ai~lLepl~~D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 589 QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL--KE------AINLLEPLTSDPVDFVRQGALIALAMIM 652 (929)
T ss_pred hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc--HH------HHHHHhhhhcChHHHHHHHHHHHHHHHH
Confidence 4677777777666677888888888777776632 12 3334444445667788888777666543
No 260
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=70.38 E-value=1.3e+02 Score=30.58 Aligned_cols=273 Identities=11% Similarity=0.051 Sum_probs=143.2
Q ss_pred hhhhHHHHHHHHhc----CCc-----hhHHHHHHHHHHHhc--cChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHH
Q 020640 28 ADRDHFLSLLKKMS----ATL-----PDQTEAAKELRLLTK--RMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQ 96 (323)
Q Consensus 28 ~~~~~i~~Lv~~l~----~~~-----~~~~~a~~~L~~l~~--~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~ 96 (323)
+-+|.++.+++.|. +++ ...+.|++.+.++.. +...-.+-+.+ .-.++.++..++ ++.--++
T Consensus 405 TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me-~fiv~hv~P~f~------s~ygfL~ 477 (970)
T COG5656 405 TFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVME-YFIVNHVIPAFR------SNYGFLK 477 (970)
T ss_pred hhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHH-HHHHHHhhHhhc------CcccchH
Confidence 45678888888882 111 123446666666553 22222233344 345566666667 5666788
Q ss_pred HHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhc--cCChHHHHHHhhhc
Q 020640 97 EDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK--SGALKPLIDLLDEG 174 (323)
Q Consensus 97 ~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~--~g~i~~Lv~lL~~~ 174 (323)
..|+..+..++.+-.......+ +.+....++++.+-.++..|+.++.-+-.++.....+.+ .+.++.|+.+-+.-
T Consensus 478 Srace~is~~eeDfkd~~ill~---aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~f 554 (970)
T COG5656 478 SRACEFISTIEEDFKDNGILLE---AYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTF 554 (970)
T ss_pred HHHHHHHHHHHHhcccchHHHH---HHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccc
Confidence 9999999888544333333332 356677888888889999999999999877765555544 44555555554443
Q ss_pred CHhHHHHHHHHHH-HhccC-CchhHHHHhhCchHHHHH----HhhcC--------chHHHHHHHHHHHhc---CHHHHHH
Q 020640 175 HQSAMKDVASAIF-NLCIT-HENKARAVRDGGVSVILK----KIMDG--------VHVDELLAILAMLST---NHRAVEE 237 (323)
Q Consensus 175 ~~~~~~~al~aL~-~L~~~-~~~~~~i~~~g~v~~Lv~----ll~~~--------~~~~~a~~~L~~l~~---~~~~~~~ 237 (323)
+.+....++..+- ..+.. .+-..+++. ..++..++ ++.++ +-+..|.++|.-+.+ .=+++..
T Consensus 555 eiD~LS~vMe~fVe~fseELspfa~eLa~-~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~ 633 (970)
T COG5656 555 EIDPLSMVMESFVEYFSEELSPFAPELAG-SLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPL 633 (970)
T ss_pred cchHHHHHHHHHHHHhHHhhchhHHHHHH-HHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchH
Confidence 3333333333321 11110 011111111 12222222 33221 235566777766554 2233333
Q ss_pred HHhc---CCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCC-HHHHHHHHHHHHHH
Q 020640 238 IGDL---GGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGT-ARAKRKATGILERL 313 (323)
Q Consensus 238 i~~~---g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~A~~~L~~l 313 (323)
+.+. ...|.+-=++++.- .+.-..|+.++-..+....+ ...+. -|..+.|.+++.+.. ..--+.++-+|.|+
T Consensus 634 vLk~le~slypvi~Filkn~i-~dfy~Ea~dildg~tf~ske-I~pim--wgi~Ell~~~l~~~~t~~y~ee~~~al~nf 709 (970)
T COG5656 634 VLKYLEVSLYPVISFILKNEI-SDFYQEALDILDGYTFMSKE-IEPIM--WGIFELLLNLLIDEITAVYSEEVADALDNF 709 (970)
T ss_pred HHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHhhhhHHHHH-hhhhh--hHHHHHHHhcccccchhhhHHHHHHHHHHH
Confidence 3221 22233333334322 55667778888777665533 23332 255566666655543 34455666667666
Q ss_pred hc
Q 020640 314 KR 315 (323)
Q Consensus 314 ~~ 315 (323)
--
T Consensus 710 it 711 (970)
T COG5656 710 IT 711 (970)
T ss_pred HH
Confidence 43
No 261
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=69.64 E-value=71 Score=27.33 Aligned_cols=128 Identities=16% Similarity=0.111 Sum_probs=90.4
Q ss_pred HhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhc-----C---------------chHHHHHHHHHHHhcCHHHH
Q 020640 176 QSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMD-----G---------------VHVDELLAILAMLSTNHRAV 235 (323)
Q Consensus 176 ~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~-----~---------------~~~~~a~~~L~~l~~~~~~~ 235 (323)
..-...++..+..|...+++...+.+.+.++.+.+.|.. + ++..--...+..++.++.+.
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl 157 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGL 157 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHH
Confidence 455666777888888887777776677888877776642 1 11233467778889999999
Q ss_pred HHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640 236 EEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 315 (323)
Q Consensus 236 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 315 (323)
+.+-+.++...+.++....+ . ..-...++.+|=...++..+. .|-+.+.++++.++.+|...|+.+.+
T Consensus 158 ~lLe~~~if~~l~~i~~~~~-~--~~l~klil~~LDY~~~~~~R~---------iLsKaLt~~s~~iRl~aT~~L~~llr 225 (226)
T PF14666_consen 158 KLLERWNIFTMLYHIFSLSS-R--DDLLKLILSSLDYSVDGHPRI---------ILSKALTSGSESIRLYATKHLRVLLR 225 (226)
T ss_pred HHHHHCCHHHHHHHHHccCc-h--HHHHHHHHhhCCCCCccHHHH---------HHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 99999999999999998643 2 222333666664444333333 35578889999999999999988754
No 262
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=69.02 E-value=16 Score=28.60 Aligned_cols=74 Identities=18% Similarity=0.267 Sum_probs=55.6
Q ss_pred hhHHHHHHHHhc-CCchhHHHHHHHHHHHhccC-hhhHHHHhhhcCCHHHHHHhhcccccCCCCCHH--HHHHHHHHHHH
Q 020640 30 RDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRM-PSFRALFGESHDAIPQLLSPLSESKCENGINPN--LQEDVITTLLN 105 (323)
Q Consensus 30 ~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~--~~~~a~~~L~~ 105 (323)
.+++..|-+.|. .++.++..|+..|-.+.++. +.++..+.+ ...+..|..++... ...+. +++.++..+..
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~-~~fl~~l~~l~~~~----~~~~~~~Vk~k~l~ll~~ 115 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVAS-KEFLDELVKLIKSK----KTDPETPVKEKILELLQE 115 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTS-HHHHHHHHHHHHHT----TTHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhH-HHHHHHHHHHHccC----CCCchhHHHHHHHHHHHH
Confidence 467777778885 67889999999998888765 456677777 77889999988753 22333 89999998877
Q ss_pred hcc
Q 020640 106 LSI 108 (323)
Q Consensus 106 ls~ 108 (323)
.+.
T Consensus 116 W~~ 118 (140)
T PF00790_consen 116 WAE 118 (140)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 263
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=68.88 E-value=30 Score=26.46 Aligned_cols=72 Identities=10% Similarity=0.285 Sum_probs=53.1
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhcccChHh-HHHHHhhcccHHHHHHHhh-----cC---CHHHHHHHHHHHHHHh
Q 020640 244 VSCMLRIIRESTCDRNKENCIAILHTICLSDRTK-WKAMREEESTHGTISKLAQ-----DG---TARAKRKATGILERLK 314 (323)
Q Consensus 244 i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~~~i~~L~~ll~-----~~---~~~~~~~A~~~L~~l~ 314 (323)
+..|.+=|+.. ++.+|.+|+.+|-.||...++. .+.+......|..+.++-. .| +..++..|..++..+.
T Consensus 40 ~d~L~kRL~~~-~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 40 LEYLLKRLKRS-SPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHhcCC-CCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 45666667654 4889999999999999977654 3455556677777777754 22 5788999999998886
Q ss_pred cc
Q 020640 315 RT 316 (323)
Q Consensus 315 ~~ 316 (323)
.+
T Consensus 119 ~~ 120 (122)
T cd03572 119 SY 120 (122)
T ss_pred cc
Confidence 54
No 264
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=68.85 E-value=94 Score=29.13 Aligned_cols=152 Identities=11% Similarity=0.172 Sum_probs=94.4
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhh--h--------cCHhHHHHHHHHHHHhccC
Q 020640 124 PLLMDALRSGT-IETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLD--E--------GHQSAMKDVASAIFNLCIT 192 (323)
Q Consensus 124 ~~Lv~ll~~~~-~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~--~--------~~~~~~~~al~aL~~L~~~ 192 (323)
..++..|..+- ...+..+..+++-|+.+...-..+....-++.|+.+.+ + .+..+...++.+|.|+..+
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~ 127 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFH 127 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhc
Confidence 34667776664 45667788888888876665444444334555555533 1 2457889999999999998
Q ss_pred CchhH-HHHhhCchHHHHHHhhcC-------chHHHHHHHHHHHhc-CHHHHHHHH-hcCCHHHHHHHHhccC---C---
Q 020640 193 HENKA-RAVRDGGVSVILKKIMDG-------VHVDELLAILAMLST-NHRAVEEIG-DLGGVSCMLRIIREST---C--- 256 (323)
Q Consensus 193 ~~~~~-~i~~~g~v~~Lv~ll~~~-------~~~~~a~~~L~~l~~-~~~~~~~i~-~~g~i~~Lv~ll~~~~---~--- 256 (323)
.+..+ ...+......+.+.+... ++...-++.|.-+.. ..+.|.++. +.+|++.+.+.+.+.- +
T Consensus 128 Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n 207 (532)
T KOG4464|consen 128 SQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEIN 207 (532)
T ss_pred cHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcC
Confidence 86544 456655555555544321 344455666666655 467888765 5688999999987621 1
Q ss_pred --h---h---HHHHHHHHHHHhcccCh
Q 020640 257 --D---R---NKENCIAILHTICLSDR 275 (323)
Q Consensus 257 --~---~---~~~~a~~~L~~L~~~~~ 275 (323)
+ . .--.++.++.|++.+..
T Consensus 208 ~~~l~pqe~n~a~EaLK~~FNvt~~~~ 234 (532)
T KOG4464|consen 208 VPPLNPQETNRACEALKVFFNVTCDSD 234 (532)
T ss_pred CCCCCHHHHHHHHHHHHHHhheeeccc
Confidence 1 1 12246666777766553
No 265
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=68.69 E-value=63 Score=31.08 Aligned_cols=111 Identities=15% Similarity=0.199 Sum_probs=65.4
Q ss_pred CchHHHHHHhhcCchHHHHHHHHHHHhcC----HHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccCh---
Q 020640 203 GGVSVILKKIMDGVHVDELLAILAMLSTN----HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR--- 275 (323)
Q Consensus 203 g~v~~Lv~ll~~~~~~~~a~~~L~~l~~~----~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~--- 275 (323)
+.++.+++.+..+.+-+--+.++. +.. ....+.+.+.+.|+.|+.+|....+...+.+|+..|..+..-..
T Consensus 21 ~~v~~llkHI~~~~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~ 98 (475)
T PF04499_consen 21 NFVDNLLKHIDTPAIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAP 98 (475)
T ss_pred cHHHHHHHhcCCcHHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccc
Confidence 566666666655444333333333 111 24555566789999999999855557799999988887744221
Q ss_pred ---------HhHHHHHhhcccHHHHHHHhhc--CCHHHHHHHHHHHHHHhc
Q 020640 276 ---------TKWKAMREEESTHGTISKLAQD--GTARAKRKATGILERLKR 315 (323)
Q Consensus 276 ---------~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~A~~~L~~l~~ 315 (323)
+..-..+....++..|+..+.. +...+.....-++..+.+
T Consensus 99 ~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRk 149 (475)
T PF04499_consen 99 QNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRK 149 (475)
T ss_pred cccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHh
Confidence 2222334466788888887663 333334444444555443
No 266
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.90 E-value=2e+02 Score=31.78 Aligned_cols=149 Identities=17% Similarity=0.146 Sum_probs=80.1
Q ss_pred CHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccch-hhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Q 020640 74 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNN-KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD 152 (323)
Q Consensus 74 ~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~-~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~ 152 (323)
.||.|.++=. +++..+|.....+=..|-.+... ...... . +..-|+.-+.+..-.+++.+|.+|..|-...
T Consensus 999 LIPrLyRY~y------DP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-e-Il~eLL~~lt~kewRVReasclAL~dLl~g~ 1070 (1702)
T KOG0915|consen 999 LIPRLYRYQY------DPDKKVQDAMTSIWNALITDSKKVVDEYLN-E-ILDELLVNLTSKEWRVREASCLALADLLQGR 1070 (1702)
T ss_pred hhHHHhhhcc------CCcHHHHHHHHHHHHHhccChHHHHHHHHH-H-HHHHHHHhccchhHHHHHHHHHHHHHHHcCC
Confidence 4566665544 77888888777754445433221 222222 2 3444555556666789999999999998765
Q ss_pred Cchhhhhc-cCChHHHHHHhhhcCHhHHHHH---HHHHHHhcc----CC-chh-HHHHhhCchHHHHH--HhhcC-chHH
Q 020640 153 SNKEVIGK-SGALKPLIDLLDEGHQSAMKDV---ASAIFNLCI----TH-ENK-ARAVRDGGVSVILK--KIMDG-VHVD 219 (323)
Q Consensus 153 ~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a---l~aL~~L~~----~~-~~~-~~i~~~g~v~~Lv~--ll~~~-~~~~ 219 (323)
++-...-. ......+++..++=.+.+++.| +++|..||. .. ..+ .++++ ..+|.|++ ++++- +++.
T Consensus 1071 ~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~-~iLPfLl~~gims~v~evr~ 1149 (1702)
T KOG0915|consen 1071 PFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALD-IILPFLLDEGIMSKVNEVRR 1149 (1702)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHH-HHHHHHhccCcccchHHHHH
Confidence 43222211 3344555555544345566554 444554432 11 111 11222 23444433 22111 5788
Q ss_pred HHHHHHHHHhcC
Q 020640 220 ELLAILAMLSTN 231 (323)
Q Consensus 220 ~a~~~L~~l~~~ 231 (323)
.++.++..|+.+
T Consensus 1150 ~si~tl~dl~Ks 1161 (1702)
T KOG0915|consen 1150 FSIGTLMDLAKS 1161 (1702)
T ss_pred HHHHHHHHHHHh
Confidence 899999999885
No 267
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=67.39 E-value=96 Score=27.99 Aligned_cols=156 Identities=11% Similarity=0.060 Sum_probs=102.5
Q ss_pred CChHHHHHHhhh-c---CHhHHHHHHHHHHHhccCC-chhHHHHhh-------C----chHHHHHHhhc------Cch--
Q 020640 162 GALKPLIDLLDE-G---HQSAMKDVASAIFNLCITH-ENKARAVRD-------G----GVSVILKKIMD------GVH-- 217 (323)
Q Consensus 162 g~i~~Lv~lL~~-~---~~~~~~~al~aL~~L~~~~-~~~~~i~~~-------g----~v~~Lv~ll~~------~~~-- 217 (323)
.++..|+.++-. . .-.+|..|+.++.....++ +.+..+++. + ....|+..|-+ .+.
T Consensus 34 pvi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~ 113 (312)
T PF04869_consen 34 PVIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYR 113 (312)
T ss_dssp EHHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHH
T ss_pred cHHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHH
Confidence 355566665433 2 4678899999999888766 556666532 1 11124444431 122
Q ss_pred HHHHHHHHHHHhcC-HHHHHHHHhc--C----------CHHHHHHHHhc----cCChhHHHHHHHHHHHhcccChHhHHH
Q 020640 218 VDELLAILAMLSTN-HRAVEEIGDL--G----------GVSCMLRIIRE----STCDRNKENCIAILHTICLSDRTKWKA 280 (323)
Q Consensus 218 ~~~a~~~L~~l~~~-~~~~~~i~~~--g----------~i~~Lv~ll~~----~~~~~~~~~a~~~L~~L~~~~~~~~~~ 280 (323)
..-|+.+|.++-.+ ++.|+.+.+- | .++.+..+|.. +.+++++..=+..|.....+.+..++.
T Consensus 114 ~wfAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~ 193 (312)
T PF04869_consen 114 CWFAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVND 193 (312)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHH
Confidence 45678888888885 5666665322 2 47777777754 334777888888888888999999999
Q ss_pred HHhhcccHHHHHHHhhc---CCHHHHHHHHHHHHHHhcch
Q 020640 281 MREEESTHGTISKLAQD---GTARAKRKATGILERLKRTV 317 (323)
Q Consensus 281 ~~~~~~~i~~L~~ll~~---~~~~~~~~A~~~L~~l~~~~ 317 (323)
++.+...++.|++.... .+.-++--++.+|-.+..|.
T Consensus 194 FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicyef~ 233 (312)
T PF04869_consen 194 FLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYEFS 233 (312)
T ss_dssp HHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHHT-
T ss_pred HHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHhc
Confidence 99998999999997522 37888999999998888765
No 268
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=66.54 E-value=26 Score=34.69 Aligned_cols=137 Identities=15% Similarity=0.072 Sum_probs=80.3
Q ss_pred hHHHHHHHHhc-----CCchhHHHHHHHHHHHhccChhhH---------HHHhhhcCCHHHHHHhhcccccCCCCCHHHH
Q 020640 31 DHFLSLLKKMS-----ATLPDQTEAAKELRLLTKRMPSFR---------ALFGESHDAIPQLLSPLSESKCENGINPNLQ 96 (323)
Q Consensus 31 ~~i~~Lv~~l~-----~~~~~~~~a~~~L~~l~~~~~~~~---------~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~ 96 (323)
..+..+.++++ .++..+..|+..+..+........ ..... ...++.|.+.|..... ..+.+-+
T Consensus 431 e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~--~~~~~~~ 507 (618)
T PF01347_consen 431 ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCII-EKYVPYLEQELKEAVS--RGDEEEK 507 (618)
T ss_dssp HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS---GGGTHHHHHHHHHHHH--TT-HHHH
T ss_pred HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhH-HHHHHHHHHHHHHHhh--ccCHHHH
Confidence 46676666664 335566667777666664322110 11111 2356666666653222 4567888
Q ss_pred HHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcC---CHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhh
Q 020640 97 EDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSG---TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE 173 (323)
Q Consensus 97 ~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~---~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~ 173 (323)
..++.+|.|+-. +..++.+..++... +..++..|+++|..++.... ..+.+.|+.++.+
T Consensus 508 ~~~LkaLgN~g~-----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~-------~~v~~~l~~I~~n 569 (618)
T PF01347_consen 508 IVYLKALGNLGH-----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP-------EKVREILLPIFMN 569 (618)
T ss_dssp HHHHHHHHHHT------------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H-------HHHHHHHHHHHH-
T ss_pred HHHHHHhhccCC-----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc-------HHHHHHHHHHhcC
Confidence 889999999953 22466666666554 67888899999887744221 1245678888776
Q ss_pred --cCHhHHHHHHHHHHH
Q 020640 174 --GHQSAMKDVASAIFN 188 (323)
Q Consensus 174 --~~~~~~~~al~aL~~ 188 (323)
.+.++|..|...|..
T Consensus 570 ~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 570 TTEDPEVRIAAYLILMR 586 (618)
T ss_dssp TTS-HHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHh
Confidence 367788888776654
No 269
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=66.41 E-value=41 Score=25.72 Aligned_cols=76 Identities=12% Similarity=0.171 Sum_probs=46.1
Q ss_pred hHHHHHHHHhc-CCchhHHHHHHHHHHHhccCh-hhHHHHhhhcCCHHHHHHhhccc--ccCCCCCHHHHHHHHHHHHHh
Q 020640 31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMP-SFRALFGESHDAIPQLLSPLSES--KCENGINPNLQEDVITTLLNL 106 (323)
Q Consensus 31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~~~~~~~a~~~L~~l 106 (323)
..+..|.+.|+ .++.++.+++..|..++.... .++..+.++...|..+.++=-.. ..+++.+..++..|-.++..+
T Consensus 38 ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 38 ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAI 117 (122)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHH
Confidence 45666777775 568999999999999987655 44555555233344433332100 012244567777777776655
No 270
>PRK14707 hypothetical protein; Provisional
Probab=65.70 E-value=2.6e+02 Score=32.31 Aligned_cols=235 Identities=13% Similarity=0.076 Sum_probs=125.6
Q ss_pred HHHHHHHHhc--CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHH-Hhcc
Q 020640 32 HFLSLLKKMS--ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLL-NLSI 108 (323)
Q Consensus 32 ~i~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~-~ls~ 108 (323)
.|-.++.-++ .+......|+..|.....+....+.. .+ .-++...++.|... .+...+..++..|. .++.
T Consensus 206 ~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~-~~-~q~va~~lN~lsKw-----p~~~~C~~a~~~lA~rl~~ 278 (2710)
T PRK14707 206 GVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNE-LK-PQELGNALNALSKW-----ADTPVCAAAASALAERLVD 278 (2710)
T ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHh-CC-hHHHHHHHHHHhcC-----CCchHHHHHHHHHHHHHhh
Confidence 4455555553 23233445666665555444444433 34 45677777777654 24456777777664 5664
Q ss_pred ccchhhhhhccCCcHHHHHHHHhc-CCH-HHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhh-c-CHhHHHHHHH
Q 020640 109 HDNNKKLVAETPMVIPLLMDALRS-GTI-ETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE-G-HQSAMKDVAS 184 (323)
Q Consensus 109 ~~~~~~~i~~~~g~i~~Lv~ll~~-~~~-~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~-~-~~~~~~~al~ 184 (323)
+..-+..+-.. + +.-.++-|.. ++. .+...+.-+-..|....+.+..+ +.-.+...++.|+. + +..+...+..
T Consensus 279 ~~~l~~al~~q-~-vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~ 355 (2710)
T PRK14707 279 DPGLRKALDPI-N-VTQALNALSKWADLPVCAEAAIALAERLADDPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSA 355 (2710)
T ss_pred hHHHHHhcCHH-H-HHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHH
Confidence 44444444332 2 3334444443 344 44444444445555544444333 33345555555554 3 4445555555
Q ss_pred HHHHhccCCchhHHHHhhCchHHHHHHhh-cC--chHHHHHHHHH-HHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHH
Q 020640 185 AIFNLCITHENKARAVRDGGVSVILKKIM-DG--VHVDELLAILA-MLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNK 260 (323)
Q Consensus 185 aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~-~~--~~~~~a~~~L~-~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~ 260 (323)
.-..|+.+++-+..+--. ++..+++.++ -+ .....++..|+ .+..+++.++.+--.|+-..|-.+-+=. +..+.
T Consensus 356 LA~rl~~d~~l~~~l~~q-~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWP-d~~~C 433 (2710)
T PRK14707 356 LAERLVADPELRKDLEPQ-GVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWP-DLPIC 433 (2710)
T ss_pred HHHHhccCHhhhcccchh-HHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCC-cchhH
Confidence 556667666666665444 4444555444 33 44555555555 5566777777776656444444444433 36677
Q ss_pred HHHHHHHHHhcccChHhH
Q 020640 261 ENCIAILHTICLSDRTKW 278 (323)
Q Consensus 261 ~~a~~~L~~L~~~~~~~~ 278 (323)
..++..|..-..++.+.+
T Consensus 434 ~~aa~~lA~~la~d~~l~ 451 (2710)
T PRK14707 434 GQAVSALAGRLAHDTELC 451 (2710)
T ss_pred HHHHHHHHHHHhccHHHH
Confidence 788888877777776643
No 271
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=63.73 E-value=1.5e+02 Score=29.04 Aligned_cols=129 Identities=17% Similarity=0.104 Sum_probs=70.5
Q ss_pred CHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc----ccchh-hhhhccCCcHHHHHHHHh----cCCHHHHHHHHHH
Q 020640 74 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI----HDNNK-KLVAETPMVIPLLMDALR----SGTIETRSNAAAA 144 (323)
Q Consensus 74 ~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~----~~~~~-~~i~~~~g~i~~Lv~ll~----~~~~~~~~~a~~~ 144 (323)
.+..+..+++.... ...+.+...++-++.++.. ..+.+ ..+.+ .+++.+...|. ..+.+-+...+++
T Consensus 394 ~l~~l~~l~~~~~~--~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~Lka 469 (574)
T smart00638 394 ILKALFELAESPEV--QKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLE--ELLKYLHELLQQAVSKGDEEEIQLYLKA 469 (574)
T ss_pred HHHHHHHHhcCccc--cccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHH--HHHHHHHHHHHHHHhcCCchheeeHHHh
Confidence 45556666663211 3355666666666666542 22211 12222 14555665553 3455556677888
Q ss_pred HHHhcCCCCchhhhhccCChHHHHHHhh-h--cCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC----ch
Q 020640 145 LFTLSALDSNKEVIGKSGALKPLIDLLD-E--GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG----VH 217 (323)
Q Consensus 145 L~~L~~~~~~~~~i~~~g~i~~Lv~lL~-~--~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~----~~ 217 (323)
|.|+... ..++.|...+. . .+..++..|+.+|+.++...... +-+.++.++.+. ++
T Consensus 470 LGN~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~-------v~~~l~~i~~n~~e~~Ev 532 (574)
T smart00638 470 LGNAGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK-------VQEVLLPIYLNRAEPPEV 532 (574)
T ss_pred hhccCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH-------HHHHHHHHHcCCCCChHH
Confidence 8877442 24566666665 2 25678999999999876533221 233566666654 34
Q ss_pred HHHHHH
Q 020640 218 VDELLA 223 (323)
Q Consensus 218 ~~~a~~ 223 (323)
|..|+.
T Consensus 533 RiaA~~ 538 (574)
T smart00638 533 RMAAVL 538 (574)
T ss_pred HHHHHH
Confidence 444443
No 272
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=62.42 E-value=9.6 Score=36.30 Aligned_cols=72 Identities=10% Similarity=0.104 Sum_probs=52.9
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640 244 VSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 316 (323)
Q Consensus 244 i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 316 (323)
+..+.+.+..++++++++.|..++.+++.+.++ ++..+-.......+++++--..+++-+.|..++..+.+.
T Consensus 329 ~~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~-r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~~ 400 (763)
T KOG4231|consen 329 MLKALKSLCAHKNPELQRQALLAVGNLAFCLEN-RRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGEN 400 (763)
T ss_pred HHHHHHHHhcccChHHHHHHHHHHHHheecccc-cccccCChHHHHHHHHHhcccccccchhhhHHHHHhhhh
Confidence 444555554455699999999999999998765 445555566777888888777788878888777776653
No 273
>PRK14707 hypothetical protein; Provisional
Probab=61.96 E-value=3e+02 Score=31.82 Aligned_cols=270 Identities=12% Similarity=0.032 Sum_probs=131.5
Q ss_pred HHHHHHHHhc--CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHH-Hhcc
Q 020640 32 HFLSLLKKMS--ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLL-NLSI 108 (323)
Q Consensus 32 ~i~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~-~ls~ 108 (323)
.+...+.-|+ .+..+...|+..|..-...+++.+..+-- -++...++-|.... +...+..|+..|. .+..
T Consensus 332 ~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~--q~~a~~lNalsKWp-----~~~~c~~aa~~LA~~l~~ 404 (2710)
T PRK14707 332 GLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEP--QGVSSVLNALSKWP-----DTPVCAAAASALAEHVVD 404 (2710)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccch--hHHHHHHhhhhcCC-----CchHHHHHHHHHHHHhcc
Confidence 3444555553 33344455666665555566666655543 46777777777652 3456666666664 6776
Q ss_pred ccchhhhhhccCCcHHHHHHHHhc-CCHHHHHHHHHHHHHh-cCCCCchhhhhccCChHHHHHHhhh-cCHhHHHHHHHH
Q 020640 109 HDNNKKLVAETPMVIPLLMDALRS-GTIETRSNAAAALFTL-SALDSNKEVIGKSGALKPLIDLLDE-GHQSAMKDVASA 185 (323)
Q Consensus 109 ~~~~~~~i~~~~g~i~~Lv~ll~~-~~~~~~~~a~~~L~~L-~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~al~a 185 (323)
+.+-++.+-.. | +.-.++-|.. ++...-..++.+|..- +.+.+.++.+--.+ |...+..++. ++..+...++..
T Consensus 405 d~~l~~~~~~Q-~-van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~-va~~LnalSKWPd~p~c~~aa~~ 481 (2710)
T PRK14707 405 DLELRKGLDPQ-G-VSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPIN-VTQALDALSKWPDTPICGQTASA 481 (2710)
T ss_pred Chhhhhhcchh-h-HHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHH-HHHHHHHhhcCCCChhHHHHHHH
Confidence 66677777664 4 4445555544 5555555666666554 34334344433333 4444454544 444555444444
Q ss_pred H-HHhccCCchhHHHHhhCchHHHHHHhhcCchHHHHHHHHHHHhc----CHHHHHHHHhcCCHHHHHHHHhccCChhHH
Q 020640 186 I-FNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLST----NHRAVEEIGDLGGVSCMLRIIRESTCDRNK 260 (323)
Q Consensus 186 L-~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~l~~----~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~ 260 (323)
| ..|+...+.+..+--.++...|-.+-+-++ ...|..++..++. ...-...|-..+....+-.+-+... ....
T Consensus 482 La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd-~~~c~~A~~~lA~rl~~~~~l~~~~~~~~~~~~lnalSKwp~-s~~C 559 (2710)
T PRK14707 482 LAARLAHERRLRKALKPQEVVIALHSLSKWPD-TPICAEAASALAERVVDELQLRKAFDAHQVVNTLKALSKWPD-KQLC 559 (2710)
T ss_pred HHHHhcccHHHHhhcCHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHhhhcCCc-hhHH
Confidence 4 455555454444322333333333333221 1233333333333 2333333332232222223334333 3445
Q ss_pred HHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhc-C-CHHHHHHHHHHHHHHhc
Q 020640 261 ENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD-G-TARAKRKATGILERLKR 315 (323)
Q Consensus 261 ~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~-~-~~~~~~~A~~~L~~l~~ 315 (323)
+.++..|..+...++.....+ ....+..+++-+.. . .+..++.+.++-..+..
T Consensus 560 ~~A~~~iA~~l~~~~~~~~~L--~aq~Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~~ 614 (2710)
T PRK14707 560 AVAASGLAERLADEPQLPKDL--HRQGVVIVLNALSKWPDTAVCAEAVNALAERLVD 614 (2710)
T ss_pred HHHHHHHHHHhhcchhhHHhh--hhhHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc
Confidence 555556666655555433333 35556666665533 2 44444444444444433
No 274
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=61.35 E-value=7.3 Score=29.00 Aligned_cols=77 Identities=14% Similarity=0.138 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhc
Q 020640 95 LQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEG 174 (323)
Q Consensus 95 ~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~ 174 (323)
++..++..=..+..+.+-|.+....+ . +++.| +--.-..+..+..|+..++.-..+++.|+++.|+.+|..+
T Consensus 28 lkklvl~fek~i~kN~e~R~K~~ddP---~---KFmdS--E~dLd~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~He 99 (108)
T PF08216_consen 28 LKKLVLSFEKRINKNQEMRIKYPDDP---E---KFMDS--EVDLDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHE 99 (108)
T ss_pred HHHHHHHHHHHHHHhHHHHHhCCCCH---H---HHHHh--HHHHHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCC
Confidence 44444444445555555555555543 1 23333 2223456677888999999999999999999999999987
Q ss_pred CHhHH
Q 020640 175 HQSAM 179 (323)
Q Consensus 175 ~~~~~ 179 (323)
+..+.
T Consensus 100 N~DIa 104 (108)
T PF08216_consen 100 NTDIA 104 (108)
T ss_pred Cccee
Confidence 66543
No 275
>PF14838 INTS5_C: Integrator complex subunit 5 C-terminus
Probab=60.74 E-value=1.9e+02 Score=29.16 Aligned_cols=193 Identities=19% Similarity=0.192 Sum_probs=106.8
Q ss_pred hhhhHHHHHHHHh-cCCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640 28 ADRDHFLSLLKKM-SATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 106 (323)
Q Consensus 28 ~~~~~i~~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l 106 (323)
.-+..+..|-..+ +.+..-+..+...|.-++..++ ..+++.+..+|.. +.+++-...++..+..+
T Consensus 178 ~l~~~~~~Lc~~lL~~n~~r~~w~~rLL~lL~~~~P---------si~~~~~~~lL~~-----A~~~~~l~lli~L~~~~ 243 (696)
T PF14838_consen 178 ELKAHITELCKELLSLNRKRQQWAHRLLCLLSSQHP---------SIAIEAISYLLTK-----AQNPEHLALLIRLYAGL 243 (696)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCC---------chHHHHHHHHHHh-----cCCHHHHHHHHHHHhcc
Confidence 3344555555555 5556666678888888875554 3345556666654 44666666666666655
Q ss_pred ccccchhhhhhccCCcHHHHHH-HHhc--CCHHHHHHHHHHHHHhc---CCC-C-------chhhhhc--cCChHHHHHH
Q 020640 107 SIHDNNKKLVAETPMVIPLLMD-ALRS--GTIETRSNAAAALFTLS---ALD-S-------NKEVIGK--SGALKPLIDL 170 (323)
Q Consensus 107 s~~~~~~~~i~~~~g~i~~Lv~-ll~~--~~~~~~~~a~~~L~~L~---~~~-~-------~~~~i~~--~g~i~~Lv~l 170 (323)
+. ..+....|..+..++ .+.. .+.-..+.+...+.||. ..+ . ....+.+ .+-++.+..+
T Consensus 244 ~~-----~~~~~~~~l~~~vle~~l~~i~~~~lt~~e~~qLl~NL~~L~k~eks~~~~~~~~~~~l~~Al~~~L~~i~~l 318 (696)
T PF14838_consen 244 SV-----VNFPSLPGLFPAVLEQCLRQIHTNTLTPTEATQLLQNLALLAKWEKSGNVPPASMSSQLTQALSSHLPDIAQL 318 (696)
T ss_pred cC-----CccccccchHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHH
Confidence 54 111122333443332 2222 12224456667777764 221 1 1223333 4567788888
Q ss_pred hhhcCHhHHHHHHHHHHHhccCCc---hhHHHH---hhCchHHHHHHhhcC------chHHHHHHHHHHHhcC-HHHHHH
Q 020640 171 LDEGHQSAMKDVASAIFNLCITHE---NKARAV---RDGGVSVILKKIMDG------VHVDELLAILAMLSTN-HRAVEE 237 (323)
Q Consensus 171 L~~~~~~~~~~al~aL~~L~~~~~---~~~~i~---~~g~v~~Lv~ll~~~------~~~~~a~~~L~~l~~~-~~~~~~ 237 (323)
|..++.++...+...|..+-.... .-..+. +. .+.-....|... .....+...|..+|.. +..+..
T Consensus 319 L~~~~~~~~~~~v~lL~~l~~~~~~~~~~~~~L~l~~~-~V~yFF~~l~~~~~~~~~~~~~~~~~lL~~l~~~s~~a~~~ 397 (696)
T PF14838_consen 319 LLHSDPEVAHAAVKLLDLLPLPEKAPLSPSLLLKLSRA-LVKYFFLCLHEKDVSGKQEGLKRCCQLLSRLCSYSPAARKA 397 (696)
T ss_pred HcCCChhHHHHHHHHHHhCCCccccCCCHHHHHHHHHH-HHHHHHHHHhhccchhhHHHHHHHHHHHHHHHccCchHHHH
Confidence 888899999999999988755442 112221 22 333333344433 1245788999999996 666665
Q ss_pred HHh
Q 020640 238 IGD 240 (323)
Q Consensus 238 i~~ 240 (323)
+.+
T Consensus 398 vLr 400 (696)
T PF14838_consen 398 VLR 400 (696)
T ss_pred HHH
Confidence 543
No 276
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=59.45 E-value=72 Score=24.98 Aligned_cols=73 Identities=8% Similarity=0.139 Sum_probs=52.9
Q ss_pred CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHH-HHHHhhc---CCHHHHHHHHHHHHHHhc
Q 020640 243 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGT-ISKLAQD---GTARAKRKATGILERLKR 315 (323)
Q Consensus 243 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~-L~~ll~~---~~~~~~~~A~~~L~~l~~ 315 (323)
++..|.+-+..+.++.++..|+.+|-.+..+-...+..-+-...++.. |++++.. ....++.+...++...+.
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 456666666644457788889999888888765545555556688887 8999863 246899999888888774
No 277
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=58.17 E-value=69 Score=31.37 Aligned_cols=109 Identities=14% Similarity=0.015 Sum_probs=49.1
Q ss_pred chhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcH
Q 020640 44 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVI 123 (323)
Q Consensus 44 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i 123 (323)
.++|+.|+.+|.-.|-++ ...++..+++|.. ++|+.++-..+-+|...+...-.+. ++
T Consensus 566 DDVrRAAViAlGfvc~~D----------~~~lv~tvelLs~-----shN~hVR~g~AvaLGiacag~G~~~-------a~ 623 (926)
T COG5116 566 DDVRRAAVIALGFVCCDD----------RDLLVGTVELLSE-----SHNFHVRAGVAVALGIACAGTGDKV-------AT 623 (926)
T ss_pred hHHHHHHHHheeeeEecC----------cchhhHHHHHhhh-----ccchhhhhhhHHHhhhhhcCCccHH-------HH
Confidence 445555555555555332 2233344444442 4455555555555543332221111 22
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhc
Q 020640 124 PLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEG 174 (323)
Q Consensus 124 ~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~ 174 (323)
..|-.+..+.+.-++..|+-++..+......+-.=--.++++.+.+++.+.
T Consensus 624 diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~K 674 (926)
T COG5116 624 DILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDK 674 (926)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhh
Confidence 333344455566667777766666643221110000133555555555554
No 278
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=58.09 E-value=55 Score=34.09 Aligned_cols=93 Identities=11% Similarity=0.177 Sum_probs=64.3
Q ss_pred chhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcH
Q 020640 44 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVI 123 (323)
Q Consensus 44 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i 123 (323)
+.++-.++.+|.++|...+... .-.+|.|++-|.- +++..++.+.+-++.-++. ....+.+. .+
T Consensus 945 ~~vra~~vvTlakmcLah~~La------Kr~~P~lvkeLe~-----~~~~aiRnNiV~am~D~C~---~YTam~d~--Yi 1008 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLA------KRLMPMLVKELEY-----NTAHAIRNNIVLAMGDICS---SYTAMTDR--YI 1008 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHH------HHHHHHHHHHHHh-----hhHHHHhcceeeeehhhHH---HHHHHHHH--hh
Confidence 4577889999999997554322 2357888877763 3345555555544444432 23345543 68
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Q 020640 124 PLLMDALRSGTIETRSNAAAALFTLSALD 152 (323)
Q Consensus 124 ~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~ 152 (323)
|.+...|+++++-++.++.-.|.+|-+.+
T Consensus 1009 P~I~~~L~Dp~~iVRrqt~ilL~rLLq~~ 1037 (1529)
T KOG0413|consen 1009 PMIAASLCDPSVIVRRQTIILLARLLQFG 1037 (1529)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999997654
No 279
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=57.42 E-value=83 Score=27.82 Aligned_cols=70 Identities=20% Similarity=0.236 Sum_probs=45.5
Q ss_pred CHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhh-hhhccCCcHHHHHH----HHh--------cCCHHHHHH
Q 020640 74 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKK-LVAETPMVIPLLMD----ALR--------SGTIETRSN 140 (323)
Q Consensus 74 ~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~-~i~~~~g~i~~Lv~----ll~--------~~~~~~~~~ 140 (323)
.+|.++.+++ +.++.++..++.+|..+...-.... .+...-|..+.+-. ++. .++..+...
T Consensus 120 iiP~iL~llD------D~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ 193 (282)
T PF10521_consen 120 IIPPILNLLD------DYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQA 193 (282)
T ss_pred HHhhHHHHhc------CCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHH
Confidence 6899999999 7789999999999998865433222 22222344444333 332 334566777
Q ss_pred HHHHHHHhc
Q 020640 141 AAAALFTLS 149 (323)
Q Consensus 141 a~~~L~~L~ 149 (323)
+..+|..|.
T Consensus 194 ay~~L~~L~ 202 (282)
T PF10521_consen 194 AYPALLSLL 202 (282)
T ss_pred HHHHHHHHH
Confidence 777777774
No 280
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=57.42 E-value=49 Score=30.03 Aligned_cols=71 Identities=14% Similarity=0.174 Sum_probs=46.5
Q ss_pred HHHHHHHhcCCCCchhhhhccC--ChHHHHHHhhhc---CHhHHHHHHHHHHHhccCCchhHHHHh-------hCchHHH
Q 020640 141 AAAALFTLSALDSNKEVIGKSG--ALKPLIDLLDEG---HQSAMKDVASAIFNLCITHENKARAVR-------DGGVSVI 208 (323)
Q Consensus 141 a~~~L~~L~~~~~~~~~i~~~g--~i~~Lv~lL~~~---~~~~~~~al~aL~~L~~~~~~~~~i~~-------~g~v~~L 208 (323)
|+..+..+.........+...+ .+..|+++++-+ ...++..|+.+|..++........++. +|.+..+
T Consensus 242 Ai~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGiL~~l 321 (329)
T PF06012_consen 242 AIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGILPQL 321 (329)
T ss_pred HHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcccHHHH
Confidence 3333333334445566666644 999999999875 567899999999999886654444443 3555555
Q ss_pred HHH
Q 020640 209 LKK 211 (323)
Q Consensus 209 v~l 211 (323)
++.
T Consensus 322 lR~ 324 (329)
T PF06012_consen 322 LRK 324 (329)
T ss_pred HHH
Confidence 553
No 281
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=57.35 E-value=69 Score=29.08 Aligned_cols=76 Identities=8% Similarity=0.030 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHhcC--CHHHHHHHHhccC--ChhHHHHHHHHHHHhcccChHhHHHHHh------hcc
Q 020640 217 HVDELLAILAMLSTNHRAVEEIGDLG--GVSCMLRIIREST--CDRNKENCIAILHTICLSDRTKWKAMRE------EES 286 (323)
Q Consensus 217 ~~~~a~~~L~~l~~~~~~~~~i~~~g--~i~~Lv~ll~~~~--~~~~~~~a~~~L~~L~~~~~~~~~~~~~------~~~ 286 (323)
++-.|+..+..+...+.....+...+ .+..|+++++-+. ...++..|..+|..++.+.. ....++. .+|
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~-~~~~V~~aLg~~v~HG 316 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRP-RCSDVLRALGANVSHG 316 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccc-cHHHHHHHhcCCCCcc
Confidence 34456666666666788888888877 9999999998533 36689999999999999774 2444443 345
Q ss_pred cHHHHHH
Q 020640 287 THGTISK 293 (323)
Q Consensus 287 ~i~~L~~ 293 (323)
++..++.
T Consensus 317 iL~~llR 323 (329)
T PF06012_consen 317 ILPQLLR 323 (329)
T ss_pred cHHHHHH
Confidence 5554443
No 282
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=55.49 E-value=2.1e+02 Score=28.04 Aligned_cols=132 Identities=12% Similarity=0.116 Sum_probs=70.8
Q ss_pred ChHHHHHHhhhc----CHhHHHHHHHHHHHh----ccCCchhHHHHhhCchHHHHHHhhcC------chHHHHHHHHHHH
Q 020640 163 ALKPLIDLLDEG----HQSAMKDVASAIFNL----CITHENKARAVRDGGVSVILKKIMDG------VHVDELLAILAML 228 (323)
Q Consensus 163 ~i~~Lv~lL~~~----~~~~~~~al~aL~~L----~~~~~~~~~i~~~g~v~~Lv~ll~~~------~~~~~a~~~L~~l 228 (323)
.++.+.+++.++ .+.+...|+-++++| |.+.+.+...+....++.+...|.+. ..+..++.+|.|+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 567777777753 445666666666655 44443332222223556666655431 2233355555555
Q ss_pred hcCHHHHHHHHhcCCHHHHHHHHh-c-cCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcC--CHHHHH
Q 020640 229 STNHRAVEEIGDLGGVSCMLRIIR-E-STCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG--TARAKR 304 (323)
Q Consensus 229 ~~~~~~~~~i~~~g~i~~Lv~ll~-~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~ 304 (323)
-... .+..+..++. . ..+..++..|+.+|..++...+... .+.|..+..+. +++++-
T Consensus 474 g~~~----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v---------~~~l~~i~~n~~e~~EvRi 534 (574)
T smart00638 474 GHPS----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV---------QEVLLPIYLNRAEPPEVRM 534 (574)
T ss_pred CChh----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH---------HHHHHHHHcCCCCChHHHH
Confidence 5421 2334444444 1 2236789999999998876555432 23444554443 566666
Q ss_pred HHHHHHHHH
Q 020640 305 KATGILERL 313 (323)
Q Consensus 305 ~A~~~L~~l 313 (323)
.|..+|-..
T Consensus 535 aA~~~lm~t 543 (574)
T smart00638 535 AAVLVLMET 543 (574)
T ss_pred HHHHHHHhc
Confidence 666555433
No 283
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=55.46 E-value=95 Score=32.18 Aligned_cols=154 Identities=13% Similarity=0.079 Sum_probs=80.2
Q ss_pred HHHHHHHHhcCCCCchhhhhccCChHHHHHHhh---hcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcCc
Q 020640 140 NAAAALFTLSALDSNKEVIGKSGALKPLIDLLD---EGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGV 216 (323)
Q Consensus 140 ~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~---~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~ 216 (323)
.++..|.-|..+.+....+.+.|.=..++-+.+ -++..+.-.++..|+.|+.+.....++++.|++..|+..=+-..
T Consensus 328 ~~~q~l~~lgey~e~lpv~~~~g~~~~~~~~~~~~q~~d~~l~~~~~k~~~~l~~h~kfa~~fv~~~gi~kll~vpr~s~ 407 (1516)
T KOG1832|consen 328 YCIQCLEILGEYVEVLPVLHEKGVDVCIVLLERTSQLDDSPLLPDVMKLICALAAHRKFAAMFVERRGILKLLAVPRVSE 407 (1516)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhCchhhhhhhhhhhccccccccHHHHHHHHHHHHhhHHHHHHHHhhhhHHHhcCCCchh
Confidence 455555555555555555555553333332222 13555677788889999988988999999999888876543221
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHh------cCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHH
Q 020640 217 HVDELLAILAMLSTNHRAVEEIGD------LGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGT 290 (323)
Q Consensus 217 ~~~~a~~~L~~l~~~~~~~~~i~~------~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~ 290 (323)
.-.-.-.+|..+......-+.+.- ..++..-+.+|..++ +..+-+++..+....... . .-..+.....+..
T Consensus 408 ~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv~~~~~l~~cs~-~~~~~~~~~ff~~~f~fr-a-il~~fd~~d~l~~ 484 (1516)
T KOG1832|consen 408 TFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVKLAIELLDCSQ-DQARKNSALFFAAAFVFR-A-ILDAFDAQDSLQK 484 (1516)
T ss_pred hhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHHHHHHHHHhcch-hhccchHHHHHHHHHHHH-H-HHHHHhhhhHHHH
Confidence 111112334444444433333332 233444455666544 444444433333222211 1 2233444566666
Q ss_pred HHHHhh
Q 020640 291 ISKLAQ 296 (323)
Q Consensus 291 L~~ll~ 296 (323)
|+.+++
T Consensus 485 l~~~~~ 490 (1516)
T KOG1832|consen 485 LLAILK 490 (1516)
T ss_pred HHHHHH
Confidence 666654
No 284
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=55.42 E-value=56 Score=21.34 Aligned_cols=51 Identities=12% Similarity=0.217 Sum_probs=34.5
Q ss_pred HHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccCh
Q 020640 225 LAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR 275 (323)
Q Consensus 225 L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~ 275 (323)
|.-||....+|+.+.+.|+-+.+-.+=+...++.+++.+-.+...|..+++
T Consensus 2 LllL~~T~~GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iLirdE~ 52 (58)
T PF04064_consen 2 LLLLCATREGREYLREKGVYPILRELHKWEEDEEVQEACERLVQILIRDEP 52 (58)
T ss_pred HhHHhccHHHHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHHhcCCC
Confidence 556888899999999988654444333333347777777777766666554
No 285
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=55.14 E-value=1.2e+02 Score=26.81 Aligned_cols=69 Identities=17% Similarity=0.276 Sum_probs=46.5
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchh--hhhccCChHHHHHHh----h--------hcCHhHHHHHHHHHH
Q 020640 122 VIPLLMDALRSGTIETRSNAAAALFTLSALDSNKE--VIGKSGALKPLIDLL----D--------EGHQSAMKDVASAIF 187 (323)
Q Consensus 122 ~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~--~i~~~g~i~~Lv~lL----~--------~~~~~~~~~al~aL~ 187 (323)
++|.++.++.+.+++.+..++.+|..+........ .+.+.|..+.+-+.+ . .++..+...+.-+|.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 68889999999999999999999999976443222 244455554444433 3 234556666667766
Q ss_pred Hhc
Q 020640 188 NLC 190 (323)
Q Consensus 188 ~L~ 190 (323)
.|+
T Consensus 200 ~L~ 202 (282)
T PF10521_consen 200 SLL 202 (282)
T ss_pred HHH
Confidence 663
No 286
>PLN03205 ATR interacting protein; Provisional
Probab=53.76 E-value=76 Score=29.61 Aligned_cols=108 Identities=13% Similarity=0.137 Sum_probs=64.4
Q ss_pred ChHHHHHHhhhcCHhHHHHHHHHHHHhccC---CchhHHHH-hhCchHHHHHHhh------c-CchHHHHHHHHHHHhc-
Q 020640 163 ALKPLIDLLDEGHQSAMKDVASAIFNLCIT---HENKARAV-RDGGVSVILKKIM------D-GVHVDELLAILAMLST- 230 (323)
Q Consensus 163 ~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~---~~~~~~i~-~~g~v~~Lv~ll~------~-~~~~~~a~~~L~~l~~- 230 (323)
.+++|+++..-++..+...+++.|..+-.+ ++.+.+.. +. -.-.|.+++. + +.++-.|+.++--+..
T Consensus 324 LlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~-NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlms 402 (652)
T PLN03205 324 LVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDA-NWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMS 402 (652)
T ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccc-cHHHHHHHHHHHHhccchhheeeehhhhhHHhhhc
Confidence 456777777777777777777766554321 12222111 11 1223444332 1 2456667777665554
Q ss_pred -CH-HHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 020640 231 -NH-RAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTIC 271 (323)
Q Consensus 231 -~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~ 271 (323)
+. .-|+.|...-++..+.++|+......+|..|+..|.-|-
T Consensus 403 sna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLL 445 (652)
T PLN03205 403 TDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLL 445 (652)
T ss_pred cchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 33 456667777789999999986444778888888777653
No 287
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=53.18 E-value=1.6e+02 Score=25.85 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=27.1
Q ss_pred hhhhhccCChH-HHHHHhhh--cCHhHHHHHHHHHHHhccCCc
Q 020640 155 KEVIGKSGALK-PLIDLLDE--GHQSAMKDVASAIFNLCITHE 194 (323)
Q Consensus 155 ~~~i~~~g~i~-~Lv~lL~~--~~~~~~~~al~aL~~L~~~~~ 194 (323)
+..+++.++++ -|+.+|.+ +++.+...+++.|.+|+.--+
T Consensus 33 ~r~lg~~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT~P~~ 75 (266)
T PF04821_consen 33 RRQLGEWNIVQKDLIPILISYKDDDKLFLACLRLLVNLTWPIE 75 (266)
T ss_pred HHHHHHhchhhhhHHHHHHhccCchHHHHHHHHHHHHhCCCHH
Confidence 44555666664 77777665 367788888888888876433
No 288
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=52.55 E-value=2.7e+02 Score=28.48 Aligned_cols=181 Identities=14% Similarity=0.096 Sum_probs=98.6
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccc
Q 020640 32 HFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN 111 (323)
Q Consensus 32 ~i~~Lv~~l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~ 111 (323)
-|..+.-++.+++---.+++.+|..+|... .++...+ +++.|-+++-.+.- ++..++...=..+..|.....
T Consensus 213 kitA~~LlvqesPvh~lk~lEtLls~c~KK--sk~~a~~---~l~~LkdlfI~~LL---PdRKLk~f~qrp~~~l~~~~~ 284 (988)
T KOG2038|consen 213 KITAMTLLVQESPVHNLKSLETLLSSCKKK--SKRDALQ---ALPALKDLFINGLL---PDRKLKYFSQRPLLELTNKRL 284 (988)
T ss_pred hhHHHHHhhcccchhHHHHHHHHHHHHhhh--hHHHHHH---HHHHHHHHHHhccC---cchhhHHHhhChhhhcccccc
Confidence 344444444566666778889999998643 4444444 46666666543321 233433333333332221111
Q ss_pred h-hh-----------hhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHH
Q 020640 112 N-KK-----------LVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAM 179 (323)
Q Consensus 112 ~-~~-----------~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~ 179 (323)
. +. .+... ++..|..+-..+=+.++..++.+++.|..+.+-.+ ...+..||.-|.++.-.+-
T Consensus 285 ~~k~Ll~WyfE~~LK~ly~r--fievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE----~~LL~~lVNKlGDpqnKia 358 (988)
T KOG2038|consen 285 RDKILLMWYFEHELKILYFR--FIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQE----NNLLVLLVNKLGDPQNKIA 358 (988)
T ss_pred ccceehHHHHHHHHHHHHHH--HHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHH----HHHHHHHHHhcCCcchhhh
Confidence 1 11 11111 45555555455567899999999999976544332 2356777888877777777
Q ss_pred HHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC----chHHHHHHHHHHHhc
Q 020640 180 KDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG----VHVDELLAILAMLST 230 (323)
Q Consensus 180 ~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~----~~~~~a~~~L~~l~~ 230 (323)
..|...|-+|....++-..++ +..+.+++-.+ .....|+..|..+..
T Consensus 359 skAsylL~~L~~~HPnMK~Vv----i~EIer~~FRpn~~~ra~Yyav~fLnQ~~L 409 (988)
T KOG2038|consen 359 SKASYLLEGLLAKHPNMKIVV----IDEIERLAFRPNVSERAHYYAVIFLNQMKL 409 (988)
T ss_pred hhHHHHHHHHHhhCCcceeeh----HHHHHHHHcccCccccceeehhhhhhhhHh
Confidence 778888878766555433332 22344444322 234445555555544
No 289
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=52.03 E-value=17 Score=27.11 Aligned_cols=34 Identities=35% Similarity=0.475 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhc
Q 020640 48 TEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLS 83 (323)
Q Consensus 48 ~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~ 83 (323)
...+..+..++. .|+....|++ .|+++.|+.+|.
T Consensus 64 d~~Ik~l~~La~-~P~LYp~lv~-l~~v~sL~~LL~ 97 (108)
T PF08216_consen 64 DEEIKKLSVLAT-APELYPELVE-LGAVPSLLGLLS 97 (108)
T ss_pred HHHHHHHHHccC-ChhHHHHHHH-cCCHHHHHHHHC
Confidence 448888999995 6788899999 999999999998
No 290
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=51.15 E-value=1.2e+02 Score=23.82 Aligned_cols=85 Identities=16% Similarity=0.137 Sum_probs=51.7
Q ss_pred chhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcCchHHHHHHHHHHHhcC--
Q 020640 154 NKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTN-- 231 (323)
Q Consensus 154 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~l~~~-- 231 (323)
.+........-..+..+|.+++.+++..|+.||..- .++ .+.. .-+.|-.++++...++.-.... +...
T Consensus 9 pk~l~~~~~l~~~~~~LL~~~d~~vQklAL~cll~~--k~~---~l~p--Y~d~L~~Lldd~~frdeL~~f~--~~~~~~ 79 (141)
T PF07539_consen 9 PKSLYRSDELYDALLRLLSSRDPEVQKLALDCLLTW--KDP---YLTP--YKDNLENLLDDKTFRDELTTFN--LSDESS 79 (141)
T ss_pred cHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CcH---HHHh--HHHHHHHHcCcchHHHHHHhhc--ccCCcC
Confidence 344434455667788999999999999999999663 222 1111 2245777777776666655433 2222
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHh
Q 020640 232 ---HRAVEEIGDLGGVSCMLRIIR 252 (323)
Q Consensus 232 ---~~~~~~i~~~g~i~~Lv~ll~ 252 (323)
++.|. .++|.++.+|-
T Consensus 80 ~I~~ehR~-----~l~pvvlRILy 98 (141)
T PF07539_consen 80 VIEEEHRP-----ELMPVVLRILY 98 (141)
T ss_pred CCCHHHHh-----HHHHHHHHHHH
Confidence 33433 34577777664
No 291
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=50.96 E-value=1.6e+02 Score=27.27 Aligned_cols=133 Identities=17% Similarity=0.137 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhh-hhhcc-C--C
Q 020640 46 DQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKK-LVAET-P--M 121 (323)
Q Consensus 46 ~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~-~i~~~-~--g 121 (323)
-|..|...|+.+++.-+ +.+.. -....+-.+|.......+.+..-+..|+..+..++....... .+.+. . .
T Consensus 227 rR~AA~dfl~~L~~~~~---~~v~~--i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~ 301 (370)
T PF08506_consen 227 RRRAACDFLRSLCKKFE---KQVTS--ILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVD 301 (370)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHH--HHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-
T ss_pred cHHHHHHHHHHHHHHHh---HHHHH--HHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccccc
Confidence 35668888888885422 22221 111222233331110015678888999999999876554211 11110 0 0
Q ss_pred cHHHHHH----HHh---cCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHH
Q 020640 122 VIPLLMD----ALR---SGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAI 186 (323)
Q Consensus 122 ~i~~Lv~----ll~---~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL 186 (323)
+...+.. -|+ +..+-++..|++.+......- .+..+. +++|.++..|.+++..+...|+.++
T Consensus 302 v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l-~~~~l~--~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 302 VVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQL-PKEQLL--QIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS--HHHHH--HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhC-CHHHHH--HHHHHHHHHhCCCCcchhhhhhhhC
Confidence 1111111 122 345667778888888775432 233333 4899999999999888888888764
No 292
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=50.63 E-value=1e+02 Score=22.87 Aligned_cols=71 Identities=10% Similarity=0.112 Sum_probs=49.4
Q ss_pred CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHH-----h-hcCCHHHHHHHHHHHHHHh
Q 020640 243 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKL-----A-QDGTARAKRKATGILERLK 314 (323)
Q Consensus 243 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~l-----l-~~~~~~~~~~A~~~L~~l~ 314 (323)
++..|.+-|.+. ++.++..|+.+|-.+..+..+.+..-+....++..++++ . ...+..+++++..++....
T Consensus 38 ~~~~l~kRl~~~-~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 38 AVDAIKKRINNK-NPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 356666666654 589999999999999998766555555555666666553 1 1127889999888877643
No 293
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=50.11 E-value=70 Score=22.62 Aligned_cols=69 Identities=9% Similarity=0.021 Sum_probs=49.2
Q ss_pred hhhhHHHHHHHHhc--CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHH
Q 020640 28 ADRDHFLSLLKKMS--ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLL 104 (323)
Q Consensus 28 ~~~~~i~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~ 104 (323)
.....+..+...++ .+.++|...+.++.++..... ..+ . .|.+.+++.+..... ++++.+...|...+.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~---~~i-~--SGW~~if~il~~aa~--~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRG---ENI-K--SGWKVIFSILRAAAK--DNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH---HHH-H--hccHHHHHHHHHHHh--CCCccHHHHHHHHHh
Confidence 44567777777764 457899999999999996433 223 3 369999999976544 557778877777654
No 294
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=49.55 E-value=66 Score=32.07 Aligned_cols=170 Identities=11% Similarity=0.039 Sum_probs=88.4
Q ss_pred hhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640 28 ADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 106 (323)
Q Consensus 28 ~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l 106 (323)
...+.+|.++++++ .|..+|..-+.-+-++... ....+.+ .-..|.+..-+. +.++.+++.++..+..|
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~-d~I~phv~~G~~------DTn~~Lre~Tlksm~~L 396 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILN-DQIFPHVALGFL------DTNATLREQTLKSMAVL 396 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhc-chhHHHHHhhcc------cCCHHHHHHHHHHHHHH
Confidence 45567777888775 5566676665555555532 3344455 567777777777 67788888888877766
Q ss_pred ccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccC-ChHHHHHHhhhcCHhHHHHHHHH
Q 020640 107 SIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSG-ALKPLIDLLDEGHQSAMKDVASA 185 (323)
Q Consensus 107 s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g-~i~~Lv~lL~~~~~~~~~~al~a 185 (323)
+..-..+ .+ . +..++.+.++-.+++..++....-+|..++.+... .++.+ .+.+....++++-...+..+..+
T Consensus 397 a~kL~~~-~L-n-~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~---~~R~~vL~~aftralkdpf~paR~a~v~~ 470 (690)
T KOG1243|consen 397 APKLSKR-NL-N-GELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAA---SVRKRVLASAFTRALKDPFVPARKAGVLA 470 (690)
T ss_pred Hhhhchh-hh-c-HHHHHHHHhhCccccCcccccceeeecccccccch---hhhccccchhhhhhhcCCCCCchhhhhHH
Confidence 5322222 11 1 11223222222223444555544455555433211 11222 23344445666666677777777
Q ss_pred HHHhccCCchhHHHHhhCchHHHHHHhhcC
Q 020640 186 IFNLCITHENKARAVRDGGVSVILKKIMDG 215 (323)
Q Consensus 186 L~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~ 215 (323)
++......+..... ...++.++-+..+.
T Consensus 471 l~at~~~~~~~~va--~kIlp~l~pl~vd~ 498 (690)
T KOG1243|consen 471 LAATQEYFDQSEVA--NKILPSLVPLTVDP 498 (690)
T ss_pred Hhhcccccchhhhh--hhccccccccccCc
Confidence 77655544322221 12445555544443
No 295
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=49.26 E-value=62 Score=26.66 Aligned_cols=68 Identities=15% Similarity=0.154 Sum_probs=51.7
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhc-chh
Q 020640 244 VSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR-TVN 318 (323)
Q Consensus 244 i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~-~~~ 318 (323)
++.++++..+. +..++..|+..+..+....= .... .+++.|+.+..+.++.++..|..+++.+.+ |+.
T Consensus 10 l~~Il~~~~~~-~~~vr~~Al~~l~~il~qGL--vnP~----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 10 LKNILELCLSS-DDSVRLAALQVLELILRQGL--VNPK----QCVPTLIALETSPNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHHHHhcCC--CChH----HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH
Confidence 45666666644 48899999999988776542 2233 489999999999999999999999998863 544
No 296
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=48.88 E-value=2.2e+02 Score=26.30 Aligned_cols=263 Identities=11% Similarity=0.049 Sum_probs=128.0
Q ss_pred CCchhHHHHHHHHHHHhccChh--hHHHHhhhcCCHHHHHHhhccccc-----CCCCCHHHHHHHHHHHHHhccccchhh
Q 020640 42 ATLPDQTEAAKELRLLTKRMPS--FRALFGESHDAIPQLLSPLSESKC-----ENGINPNLQEDVITTLLNLSIHDNNKK 114 (323)
Q Consensus 42 ~~~~~~~~a~~~L~~l~~~~~~--~~~~i~~~~g~i~~Lv~lL~~~~~-----~~~~~~~~~~~a~~~L~~ls~~~~~~~ 114 (323)
++...|..|-..|.+.-+..+. .+..+.+ -++.++++++..-. .+..+..+...|+.+|..+-.+++-..
T Consensus 5 ~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~---k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~ 81 (372)
T PF12231_consen 5 SDRSSRLDAYMTLNNALKAYDNLPDRQALQD---KMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVS 81 (372)
T ss_pred CCcHHHHHHHHHHHHHHHHhcCCCcHHHHHH---HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHh
Confidence 3445566666666655543221 1222222 24445554432111 112377899999999998877666444
Q ss_pred hhhccCC--cHHHHHHHHhcC--CHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhh-----cCHhHHHHHHHH
Q 020640 115 LVAETPM--VIPLLMDALRSG--TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE-----GHQSAMKDVASA 185 (323)
Q Consensus 115 ~i~~~~g--~i~~Lv~ll~~~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~al~a 185 (323)
.+....+ ++...+..+..+ +..+.....++|..= .....++....+..++..+.. ++..+....+.+
T Consensus 82 ~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q----~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i 157 (372)
T PF12231_consen 82 TLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQ----KFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNI 157 (372)
T ss_pred hCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC----CCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHH
Confidence 4444321 233344444433 334444444444332 122234445556666666543 466788888888
Q ss_pred HHHhccCCchhHHHHhh-C-chHHHHHHhhcC--chHHHHHHHHHHHhc--CH--HHHH---HHHhc----C-----CHH
Q 020640 186 IFNLCITHENKARAVRD-G-GVSVILKKIMDG--VHVDELLAILAMLST--NH--RAVE---EIGDL----G-----GVS 245 (323)
Q Consensus 186 L~~L~~~~~~~~~i~~~-g-~v~~Lv~ll~~~--~~~~~a~~~L~~l~~--~~--~~~~---~i~~~----g-----~i~ 245 (323)
+.+|....+ ..|.+. + -++.++..+-+. .++..|...+..+.. .+ ..-+ ...+. | ..+
T Consensus 158 ~~~ll~q~p--~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 235 (372)
T PF12231_consen 158 YKRLLSQFP--QQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCE 235 (372)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHH
Confidence 888865443 223332 2 445555544443 566666666555543 21 1111 12221 2 233
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640 246 CMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 315 (323)
Q Consensus 246 ~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 315 (323)
.|-.|+.+.++...--..-.++.-|.....-...+.+ ..++...-....++++.+|..|..+=+.+..
T Consensus 236 ~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~--n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy 303 (372)
T PF12231_consen 236 RLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHL--NEWLKVPEKCFNSSDPQVKIQAFKAWRRLIY 303 (372)
T ss_pred HHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhH--hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3556666423233333344444444432210011222 2344444444555688888888776655543
No 297
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=48.55 E-value=30 Score=28.92 Aligned_cols=116 Identities=12% Similarity=0.046 Sum_probs=37.5
Q ss_pred hhhhhccCCcHHHHHHHHhcC---C---------------HHHHHHHHHHHHHhcCC-CCchhhhhccCChHHHHHHhhh
Q 020640 113 KKLVAETPMVIPLLMDALRSG---T---------------IETRSNAAAALFTLSAL-DSNKEVIGKSGALKPLIDLLDE 173 (323)
Q Consensus 113 ~~~i~~~~g~i~~Lv~ll~~~---~---------------~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~ 173 (323)
+..+...-|++..++.+++.+ . .++...+...|..++.. .+|+..+.+. ++.++..+..
T Consensus 35 rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~ 112 (207)
T PF01365_consen 35 RQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQ 112 (207)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHC
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHH
Confidence 444444456777777777532 1 35667788888888754 3455555542 3333333332
Q ss_pred cCHhHHHHHHHHHHHhccCC-chhHHHHhhCchHHHHHHhhcCchHHHHHHHHHHHhcC
Q 020640 174 GHQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTN 231 (323)
Q Consensus 174 ~~~~~~~~al~aL~~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~l~~~ 231 (323)
.....-..+..+|..+-.++ +-...+.+ ..+..++.++....-...-+..|..+|.+
T Consensus 113 ~~~~~~~~~~d~l~~i~~dN~~L~~~i~e-~~I~~~i~ll~~~gr~~~~L~~L~~lc~~ 170 (207)
T PF01365_consen 113 LQIGYGLGALDVLTEIFRDNPELCESISE-EHIEKFIELLRKHGRQPRYLDFLSSLCVC 170 (207)
T ss_dssp CCH-TTHHHHHHHHHHHTT----------------------------------------
T ss_pred hhccCCchHHHHHHHHHHCcHHHHHHhhH-HHHHHHHHHHHHcCCChHHHHHHhhhccc
Confidence 11111123445555554444 33333333 35888888887754555577777777775
No 298
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=48.05 E-value=3e+02 Score=27.64 Aligned_cols=180 Identities=9% Similarity=0.056 Sum_probs=104.0
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHH
Q 020640 121 MVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAV 200 (323)
Q Consensus 121 g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~ 200 (323)
+++|.|+.+++..+..++..-+.-+-.... ---..+++..++|.+..-+.+.++.+++.++.++..|+.-=.-+ .+
T Consensus 330 ~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~--~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--~L 405 (690)
T KOG1243|consen 330 RIIPVLLKLFKSPDRQIRLLLLQYIEKYID--HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--NL 405 (690)
T ss_pred chhhhHHHHhcCcchHHHHHHHHhHHHHhh--hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--hh
Confidence 378999999999888877654444333322 12345667778999999999999999999999988775321111 11
Q ss_pred hhCchHHHHHHhhc--CchHHHHHHHHHHHhcC--HHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChH
Q 020640 201 RDGGVSVILKKIMD--GVHVDELLAILAMLSTN--HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT 276 (323)
Q Consensus 201 ~~g~v~~Lv~ll~~--~~~~~~a~~~L~~l~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~ 276 (323)
....+..+.++=.+ +.++.+..-+|..++.+ +..|..+ .+..+..-+++.- ...+.++...++.....-+.
T Consensus 406 n~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~v----L~~aftralkdpf-~paR~a~v~~l~at~~~~~~ 480 (690)
T KOG1243|consen 406 NGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRV----LASAFTRALKDPF-VPARKAGVLALAATQEYFDQ 480 (690)
T ss_pred cHHHHHHHHhhCccccCcccccceeeecccccccchhhhccc----cchhhhhhhcCCC-CCchhhhhHHHhhcccccch
Confidence 11122222222222 25666666666666664 2222222 2444455555433 55677777777766554432
Q ss_pred hHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 020640 277 KWKAMREEESTHGTISKLAQDGTARAKRKATGILERL 313 (323)
Q Consensus 277 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l 313 (323)
.++ ...+.+.+.-+.-+.+..++..|-..++.+
T Consensus 481 --~~v--a~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 481 --SEV--ANKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred --hhh--hhhccccccccccCcccchhhHHHHHHHHH
Confidence 222 234666666666666666666665555443
No 299
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=47.11 E-value=1.6e+02 Score=28.37 Aligned_cols=114 Identities=16% Similarity=0.202 Sum_probs=67.1
Q ss_pred HHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhh---hhccCCcHHHHHHHHhc-CCHHHHHHHH
Q 020640 67 LFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKL---VAETPMVIPLLMDALRS-GTIETRSNAA 142 (323)
Q Consensus 67 ~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~---i~~~~g~i~~Lv~ll~~-~~~~~~~~a~ 142 (323)
-+....+.++.+++.+. .+.+...-++++. +...+.+.. .....++++.|+.+|.. .+.+.+..|+
T Consensus 15 Fik~~~~~v~~llkHI~--------~~~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa 84 (475)
T PF04499_consen 15 FIKSQPNFVDNLLKHID--------TPAIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAA 84 (475)
T ss_pred HHHhCccHHHHHHHhcC--------CcHHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHH
Confidence 33433556666666555 3455554444443 222222222 22235699999999973 4678888998
Q ss_pred HHHHHhc---CCC-----------CchhhhhccCChHHHHHHhhh-cCHhHHHHHHHHHHHhc
Q 020640 143 AALFTLS---ALD-----------SNKEVIGKSGALKPLIDLLDE-GHQSAMKDVASAIFNLC 190 (323)
Q Consensus 143 ~~L~~L~---~~~-----------~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~al~aL~~L~ 190 (323)
.+|..+. .+. +-...+.....+..|++.+-. .......+++..+..|-
T Consensus 85 ~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLI 147 (475)
T PF04499_consen 85 DFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELI 147 (475)
T ss_pred HHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 8887773 211 113455666778888886553 34667777777776664
No 300
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=47.08 E-value=42 Score=32.75 Aligned_cols=63 Identities=13% Similarity=0.115 Sum_probs=40.7
Q ss_pred CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 020640 243 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERL 313 (323)
Q Consensus 243 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l 313 (323)
.+...+++|.++++..++-..+-+|.--|.+...+ -++..|-.+..+.++-+++.|+-++.-+
T Consensus 586 ~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~--------~a~diL~~L~~D~~dfVRQ~AmIa~~mI 648 (926)
T COG5116 586 LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK--------VATDILEALMYDTNDFVRQSAMIAVGMI 648 (926)
T ss_pred hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH--------HHHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 56777788877777778888888887777765332 2344455555666666666666555433
No 301
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=47.00 E-value=66 Score=25.59 Aligned_cols=104 Identities=13% Similarity=0.029 Sum_probs=50.1
Q ss_pred hhhhhHHHHHHHHhcCCc-hhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHH
Q 020640 27 EADRDHFLSLLKKMSATL-PDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN 105 (323)
Q Consensus 27 ~~~~~~i~~Lv~~l~~~~-~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ 105 (323)
|.+..-...|+++|+..+ ......+..|.+-..-..+ ...-++ ++++..++.==. ....--...|+..|..
T Consensus 18 PL~a~Qt~~lielLk~~~~~~~~~lldLL~~RV~PGVD-~AA~VK-A~FL~~ia~g~~------~~~~Is~~~Av~LLGt 89 (154)
T PF11791_consen 18 PLNAEQTAELIELLKNPPAGEEAFLLDLLTNRVPPGVD-EAAYVK-AEFLAAIAKGEI------SSPLISPAEAVELLGT 89 (154)
T ss_dssp ---HHHHHHHHHHHHS--TT-HHHHHHHHHHSS--TT--HHHHHH-HHHHHHHHTTSS-------BTTB-HHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHhCCCCccHHHHHHHHHhcCCCCCC-hHHHHH-HHHHHHHHcCCc------cCCCcCHHHHHHHHhh
Confidence 444567788888886443 3344455555554422211 122233 333333332111 1122345556666665
Q ss_pred hccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 020640 106 LSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLS 149 (323)
Q Consensus 106 ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~ 149 (323)
+-. |--+..|+.+|.+.+.++...|+.+|.+-.
T Consensus 90 M~G-----------GYNV~~LI~~L~~~d~~lA~~Aa~aLk~Tl 122 (154)
T PF11791_consen 90 MLG-----------GYNVQPLIDLLKSDDEELAEEAAEALKNTL 122 (154)
T ss_dssp S-S-----------STTHHHHHHGG--G-TTTHHHHHHHHHT--
T ss_pred ccC-----------CCcHHHHHHHHcCCcHHHHHHHHHHHHhhH
Confidence 532 223788999998888899999999998864
No 302
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.85 E-value=3.5e+02 Score=27.97 Aligned_cols=172 Identities=9% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHhhcccccCCCCCHHHHHHHHHHH-HHhccccchhhhhhccCCcHHHHHHHH-----------hcCCHHHHHHHH
Q 020640 75 IPQLLSPLSESKCENGINPNLQEDVITTL-LNLSIHDNNKKLVAETPMVIPLLMDAL-----------RSGTIETRSNAA 142 (323)
Q Consensus 75 i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L-~~ls~~~~~~~~i~~~~g~i~~Lv~ll-----------~~~~~~~~~~a~ 142 (323)
+|.++++|+ ++...+-.+|+.++ ..+...+.+...+...+.+.|.+..++ +.+++-..+...
T Consensus 500 ~p~li~~L~------a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaIm 573 (960)
T KOG1992|consen 500 LPRLIRFLE------AESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIM 573 (960)
T ss_pred HHHHHHhcc------CcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHH
Q ss_pred HHHHHhcCCCCchhhhhccCChHHHHHHhhhc-----CHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--
Q 020640 143 AALFTLSALDSNKEVIGKSGALKPLIDLLDEG-----HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG-- 215 (323)
Q Consensus 143 ~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~-----~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~-- 215 (323)
+.+.-+-..--......-.+..+.+-+..+.+ +.-..+...-.+...|..+.....-.+...+|.+-..+.++
T Consensus 574 Rii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~ 653 (960)
T KOG1992|consen 574 RIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQ 653 (960)
T ss_pred HHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred chHHHHHHHHHHHhcCHHH--------------HHHHHhc-CCHHHHHHHHh
Q 020640 216 VHVDELLAILAMLSTNHRA--------------VEEIGDL-GGVSCMLRIIR 252 (323)
Q Consensus 216 ~~~~~a~~~L~~l~~~~~~--------------~~~i~~~-g~i~~Lv~ll~ 252 (323)
+..-.+..+|+-+.....+ ...+++. |-|+.++.+++
T Consensus 654 EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~ 705 (960)
T KOG1992|consen 654 EFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQ 705 (960)
T ss_pred HHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHH
No 303
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=46.73 E-value=2.7e+02 Score=26.66 Aligned_cols=169 Identities=9% Similarity=0.037 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHh-cCCCCchhhhhccCChHHHHHHhhh-cCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHh
Q 020640 135 IETRSNAAAALFTL-SALDSNKEVIGKSGALKPLIDLLDE-GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKI 212 (323)
Q Consensus 135 ~~~~~~a~~~L~~L-~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll 212 (323)
.+-++.|..-|..+ +.....-..=.-..++..+++.|.+ .+...++.|++.|..++.+...+..=..+-++..+++.-
T Consensus 301 a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa 380 (516)
T KOG2956|consen 301 ASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAA 380 (516)
T ss_pred hhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHH
Confidence 34455555534444 3332222221112256677788877 678889999999999988776554332223555666655
Q ss_pred hcC--c-hHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccCh-HhHHHHHhhccc
Q 020640 213 MDG--V-HVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR-TKWKAMREEEST 287 (323)
Q Consensus 213 ~~~--~-~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~~~ 287 (323)
++. . .+..+=.++.-+++. |..+ |..+..++...+ ++.-..++..+..++..=. +..-.++ ..+
T Consensus 381 ~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~D-~~~~~~~iKm~Tkl~e~l~~EeL~~ll--~di 449 (516)
T KOG2956|consen 381 KDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTAD-EPRAVAVIKMLTKLFERLSAEELLNLL--PDI 449 (516)
T ss_pred hCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcCc-chHHHHHHHHHHHHHhhcCHHHHHHhh--hhh
Confidence 544 2 222222333344443 2221 233334444332 5455556666666666432 2233444 478
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 020640 288 HGTISKLAQDGTARAKRKATGILERLK 314 (323)
Q Consensus 288 i~~L~~ll~~~~~~~~~~A~~~L~~l~ 314 (323)
.|.+++-..+.+..+++.|...|=-+-
T Consensus 450 aP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 450 APCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred hhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 899999999999999998887765443
No 304
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=46.50 E-value=94 Score=23.78 Aligned_cols=62 Identities=10% Similarity=0.078 Sum_probs=43.4
Q ss_pred ChHHHHHHhhhcC----HhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcCchHHHHHHHH
Q 020640 163 ALKPLIDLLDEGH----QSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAIL 225 (323)
Q Consensus 163 ~i~~Lv~lL~~~~----~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L 225 (323)
+++.+.+.+.... ......++.++..... --....+.+...++.+.+++.++..++.|+.+|
T Consensus 83 i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~-~~~~~~i~~~~~l~~~~~~l~~~~~~~~A~~cl 148 (148)
T PF08389_consen 83 ILEILSQILSQSSSEANEELVKAALKCLKSWIS-WIPIELIINSNLLNLIFQLLQSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTT-TS-HHHHHSSSHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH-hCCHHHhccHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 3444444444432 7788899999988766 333455566678999999998888888888765
No 305
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=46.43 E-value=2.2e+02 Score=26.07 Aligned_cols=104 Identities=12% Similarity=0.107 Sum_probs=63.8
Q ss_pred ChHHHHHHhhhc-------CHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC------------chHHHHHH
Q 020640 163 ALKPLIDLLDEG-------HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG------------VHVDELLA 223 (323)
Q Consensus 163 ~i~~Lv~lL~~~-------~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~------------~~~~~a~~ 223 (323)
.+|.++.++.++ +.......++.++.|..++.......-+-.+|.++..+-.. .+++.|+.
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ 290 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAAR 290 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHH
Confidence 456666666543 46667778888888888876555443333677777655311 46888999
Q ss_pred HHHHHhcC-----HHHHHHHHhcCCHHHHHHHHhccCChh-HHHHHHHHHHHhc
Q 020640 224 ILAMLSTN-----HRAVEEIGDLGGVSCMLRIIRESTCDR-NKENCIAILHTIC 271 (323)
Q Consensus 224 ~L~~l~~~-----~~~~~~i~~~g~i~~Lv~ll~~~~~~~-~~~~a~~~L~~L~ 271 (323)
+|..++.. +..+..+ +..+.+.+.+...+. .+.-|+..|..|.
T Consensus 291 ll~~i~~~f~~~y~~l~~ri-----~~tl~k~l~d~~~~~~~~YGAi~GL~~lG 339 (343)
T cd08050 291 LLAQICRKFSTSYNTLQPRI-----TRTLLKALLDPKKPLTTHYGAIVGLSALG 339 (343)
T ss_pred HHHHHHHHcCCCCCcHHHHH-----HHHHHHHHcCCCCCcchhhHHHHHHHHhC
Confidence 99988862 2333333 346666666443233 3666666666654
No 306
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=46.01 E-value=94 Score=31.67 Aligned_cols=59 Identities=14% Similarity=0.089 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640 257 DRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 315 (323)
Q Consensus 257 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 315 (323)
..+......+|..++...++....++.+.+...+++.++.++++++.+.|..+|+...+
T Consensus 495 ~~~~~~~~~il~rls~~~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d 553 (727)
T PF12726_consen 495 GQITDLISQILERLSDFDPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD 553 (727)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhc
Confidence 34567788999999999999999999999999999999999999999999999998775
No 307
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=45.93 E-value=2e+02 Score=25.00 Aligned_cols=101 Identities=10% Similarity=0.138 Sum_probs=60.2
Q ss_pred cCChHHHHHHhhhc-----------CHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC-c---------hHH
Q 020640 161 SGALKPLIDLLDEG-----------HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG-V---------HVD 219 (323)
Q Consensus 161 ~g~i~~Lv~lL~~~-----------~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~-~---------~~~ 219 (323)
.-.+|.|+++|... +.....+|+..|..+ -+..+.+.++++++-+ . +.+
T Consensus 30 e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~----------re~~A~~~li~l~~~~~~~~~~l~GD~~tE 99 (249)
T PF06685_consen 30 EEITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQF----------REERALPPLIRLFSQDDDFLEDLFGDFITE 99 (249)
T ss_pred HHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHH----------hhhhhHHHHHHHHcCCcchHHHHHcchhHh
Confidence 45788888888752 111223333333332 3346888999998743 2 122
Q ss_pred HHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccC-ChhHHHHHHHHHHHhcccChHhHHHHH
Q 020640 220 ELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIREST-CDRNKENCIAILHTICLSDRTKWKAMR 282 (323)
Q Consensus 220 ~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~-~~~~~~~a~~~L~~L~~~~~~~~~~~~ 282 (323)
..-++|+.++ .|-++.|.+++.+++ +..+|..|+.+|..++..++..+.+++
T Consensus 100 ~l~~ilasv~-----------~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi 152 (249)
T PF06685_consen 100 DLPRILASVG-----------DGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVI 152 (249)
T ss_pred HHHHHHHHHh-----------CCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 2233333332 355777778887543 366889999999999988876555554
No 308
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=45.15 E-value=83 Score=22.24 Aligned_cols=67 Identities=15% Similarity=0.060 Sum_probs=44.2
Q ss_pred HhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHH----hhcCCHHHHHHHHHHHH
Q 020640 239 GDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKL----AQDGTARAKRKATGILE 311 (323)
Q Consensus 239 ~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~l----l~~~~~~~~~~A~~~L~ 311 (323)
.+...+.++..++....+..+|+..+.++..+.....+ .+ .+|+ +.+..+ ..++++.+...|-.+++
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~---~i--~SGW-~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGE---NI--KSGW-KVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHH---HH--Hhcc-HHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 34456788888887655588999999999999887643 33 3443 444443 34446666766665554
No 309
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=44.52 E-value=1.3e+02 Score=22.51 Aligned_cols=39 Identities=13% Similarity=0.151 Sum_probs=31.5
Q ss_pred ChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHh
Q 020640 163 ALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVR 201 (323)
Q Consensus 163 ~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~ 201 (323)
+++.|+.-|.+.++++...|+.+|...|..+.....++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 578889999999999999999999999887754444443
No 310
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=44.46 E-value=1e+02 Score=29.71 Aligned_cols=61 Identities=26% Similarity=0.345 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 020640 90 GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSA 150 (323)
Q Consensus 90 ~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~ 150 (323)
.++++++..|..++.+++.+.++|....-++..-..+++++..+.+++-+.++.++..+-.
T Consensus 339 ~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 339 HKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred ccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 6789999999999999999999888766666555677888888777787888888777653
No 311
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=42.77 E-value=5.7e+02 Score=29.30 Aligned_cols=255 Identities=9% Similarity=0.002 Sum_probs=135.4
Q ss_pred chhHHHHHHHHHHHhccChhhHHHH----hhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhcc
Q 020640 44 LPDQTEAAKELRLLTKRMPSFRALF----GESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAET 119 (323)
Q Consensus 44 ~~~~~~a~~~L~~l~~~~~~~~~~i----~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~ 119 (323)
..+..-|+..|+.++..--+ +..+ .+ ...+.++..++.+ +.+.++++..+..+.++-.. +..-..+
T Consensus 1151 ~~va~fAidsLrQLs~kfle-~eEL~~f~FQ-kefLkPfe~im~~-----s~~~eVrE~ILeCv~qmI~s---~~~nIkS 1220 (1780)
T PLN03076 1151 LSIAIFAMDSLRQLSMKFLE-REELANYNFQ-NEFMKPFVIVMRK-----SNAVEIRELIIRCVSQMVLS---RVNNVKS 1220 (1780)
T ss_pred hhHHHHHHHHHHHHHHHhcc-hhhhhchhHH-HHHHHHHHHHHHh-----cCchHHHHHHHHHHHHHHHH---HHhhhhc
Confidence 44556677777676643221 1111 11 2456677776764 55778999999988877432 2222233
Q ss_pred CCcHHHHHHHHh----cCCHHHHHHHHHHHHHhcCCCCchhhhhc--cCC----hHHHHHHhhhc-CHhHHHHHHHHHHH
Q 020640 120 PMVIPLLMDALR----SGTIETRSNAAAALFTLSALDSNKEVIGK--SGA----LKPLIDLLDEG-HQSAMKDVASAIFN 188 (323)
Q Consensus 120 ~g~i~~Lv~ll~----~~~~~~~~~a~~~L~~L~~~~~~~~~i~~--~g~----i~~Lv~lL~~~-~~~~~~~al~aL~~ 188 (323)
| .+.++.++. ..++.+...|..++..+..+ .-..+.. .+. |..|.++.... +..+...|+..||+
T Consensus 1221 -G-WktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d--~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~ 1296 (1780)
T PLN03076 1221 -G-WKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRE--YFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRF 1296 (1780)
T ss_pred -C-cHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHh--hhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHH
Confidence 4 566777765 44678888888888776531 1111111 233 44444444433 46677788888886
Q ss_pred hccCC----------------------------chhHHH-----HhhCchHHHHHH---hhcC--chHHHHHHHHHHHhc
Q 020640 189 LCITH----------------------------ENKARA-----VRDGGVSVILKK---IMDG--VHVDELLAILAMLST 230 (323)
Q Consensus 189 L~~~~----------------------------~~~~~i-----~~~g~v~~Lv~l---l~~~--~~~~~a~~~L~~l~~ 230 (323)
++..- +.-..+ ....-++.|..+ ..+. ++|..|+..|..+-.
T Consensus 1297 ~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~ 1376 (1780)
T PLN03076 1297 CATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLR 1376 (1780)
T ss_pred HHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 61100 000000 001123333333 2233 678888888776654
Q ss_pred C------HHHHHHHHhcCCHHHHHHHHhcc-----------------C-----ChhHHHHHHHHHHHhcccCh---HhHH
Q 020640 231 N------HRAVEEIGDLGGVSCMLRIIRES-----------------T-----CDRNKENCIAILHTICLSDR---TKWK 279 (323)
Q Consensus 231 ~------~~~~~~i~~~g~i~~Lv~ll~~~-----------------~-----~~~~~~~a~~~L~~L~~~~~---~~~~ 279 (323)
. ++.-..+++ +++-++...++.. + +..+.+.+..+|..++.--. +...
T Consensus 1377 ~yG~~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~ 1455 (1780)
T PLN03076 1377 NHGHLFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVN 1455 (1780)
T ss_pred HhhccCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 234444443 4566666555421 0 01124555555555544322 2333
Q ss_pred HHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640 280 AMREEESTHGTISKLAQDGTARAKRKATGILERLKR 315 (323)
Q Consensus 280 ~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 315 (323)
.++ .+++..|..++..+++.+-+-...+|.+|-.
T Consensus 1456 ~~L--~~~l~ll~~ci~q~n~~la~ig~~~l~~li~ 1489 (1780)
T PLN03076 1456 PLL--KKVLMLLVSFIKRPHQSLAGIGIAAFVRLMS 1489 (1780)
T ss_pred HHH--HHHHHHHHHHHcCchHHHHHHHHHHHHHHHH
Confidence 443 3566777777777788888888888877753
No 312
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=40.54 E-value=60 Score=33.83 Aligned_cols=94 Identities=17% Similarity=0.154 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHh
Q 020640 217 HVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLA 295 (323)
Q Consensus 217 ~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll 295 (323)
++..++-+|++||.. ++..+. .+|.|++-|+-.++.-++.+.+-+++-+|.+.. .++ ...+|.+..-+
T Consensus 947 vra~~vvTlakmcLah~~LaKr-----~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT----am~--d~YiP~I~~~L 1015 (1529)
T KOG0413|consen 947 VRAVGVVTLAKMCLAHDRLAKR-----LMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT----AMT--DRYIPMIAASL 1015 (1529)
T ss_pred HHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH----HHH--HHhhHHHHHHh
Confidence 356677888888873 333322 468888888755556677777778887777542 333 47899999999
Q ss_pred hcCCHHHHHHHHHHHHHHhcchhhcc
Q 020640 296 QDGTARAKRKATGILERLKRTVNLTH 321 (323)
Q Consensus 296 ~~~~~~~~~~A~~~L~~l~~~~~~~~ 321 (323)
.+.++-+++.+.-+|.+|..+.-.+|
T Consensus 1016 ~Dp~~iVRrqt~ilL~rLLq~~~vKw 1041 (1529)
T KOG0413|consen 1016 CDPSVIVRRQTIILLARLLQFGIVKW 1041 (1529)
T ss_pred cCchHHHHHHHHHHHHHHHhhhhhhc
Confidence 99999999999999999988776665
No 313
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=40.43 E-value=93 Score=32.10 Aligned_cols=65 Identities=14% Similarity=0.097 Sum_probs=49.8
Q ss_pred HHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhccc-----ChHhHHHHHhhcccHHHHHHHhhcCC
Q 020640 235 VEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLS-----DRTKWKAMREEESTHGTISKLAQDGT 299 (323)
Q Consensus 235 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~-----~~~~~~~~~~~~~~i~~L~~ll~~~~ 299 (323)
.+.+-+...++.++.++..+.+..++.+|...|+.+++. .|+...+-+....++..|+..+..+.
T Consensus 183 iq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~~ 252 (838)
T KOG2073|consen 183 IQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLEDG 252 (838)
T ss_pred HHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccCC
Confidence 334445578999999998665578999999999999988 66645555567889999998876643
No 314
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=40.30 E-value=2.8e+02 Score=25.02 Aligned_cols=175 Identities=13% Similarity=0.090 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHhccccchhhhhhccCCcHHHHHH-HHh----c----CCHHHHHHHHHHHHHhcC-CCCchhhhhccCC
Q 020640 94 NLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMD-ALR----S----GTIETRSNAAAALFTLSA-LDSNKEVIGKSGA 163 (323)
Q Consensus 94 ~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~-ll~----~----~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~g~ 163 (323)
.++...+..+...-...++...+... +++.++. +|. + .++++..-...++..+.. ..+.-..+.+ .+
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~~~v~~~--~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~-~v 118 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDPEEVANN--FIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILE-AV 118 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-HHHHHHH--THHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHH--HHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHH-HH
Confidence 56677777776554444455555553 5777666 332 1 267777777777777754 2333444443 47
Q ss_pred hHHHHHHhhhc---CHhHHHHHHHHHHHhccCCchhHHHHhh----CchHHHHHHhhcC--chHHHHHHHHHHHhc----
Q 020640 164 LKPLIDLLDEG---HQSAMKDVASAIFNLCITHENKARAVRD----GGVSVILKKIMDG--VHVDELLAILAMLST---- 230 (323)
Q Consensus 164 i~~Lv~lL~~~---~~~~~~~al~aL~~L~~~~~~~~~i~~~----g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~---- 230 (323)
..+.+.++..+ -|+.+..--..|.++....-....-+.. -.+..++..+++. ++.+.++.+|..+..
T Consensus 119 f~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 119 FECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 78888888764 5788887777777775543211111111 2444555555544 677888887777765
Q ss_pred -CHHHHHHHHhcC---CHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 020640 231 -NHRAVEEIGDLG---GVSCMLRIIRESTCDRNKENCIAILHTIC 271 (323)
Q Consensus 231 -~~~~~~~i~~~g---~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~ 271 (323)
+++....+.+.- .+..+...+.++.-...-..-+.+|..|-
T Consensus 199 ~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf 243 (319)
T PF08767_consen 199 TNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLF 243 (319)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence 356666777654 45555566665321222333335555554
No 315
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=39.94 E-value=85 Score=26.18 Aligned_cols=124 Identities=15% Similarity=0.117 Sum_probs=43.4
Q ss_pred hhHHHHhhhcCCHHHHHHhhcccccCC------------CCCHHHHHHHHHHHHHhccccc-hhhhhhccCCcHHHHHHH
Q 020640 63 SFRALFGESHDAIPQLLSPLSESKCEN------------GINPNLQEDVITTLLNLSIHDN-NKKLVAETPMVIPLLMDA 129 (323)
Q Consensus 63 ~~~~~i~~~~g~i~~Lv~lL~~~~~~~------------~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~g~i~~Lv~l 129 (323)
..+..+.. .|++..++++|+...... +.-.++...+...|..++.+.. |+..+.+. ++.++..
T Consensus 34 ~rQ~llrn-l~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~---~~~l~~~ 109 (207)
T PF01365_consen 34 ERQKLLRN-LGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH---LDFLISI 109 (207)
T ss_dssp HHHHHHHH-TTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH---HH-----
T ss_pred hhHHHHHH-HHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH---HhHHHHH
Confidence 44566777 999999999997532200 0113566777778887777654 56666552 4444444
Q ss_pred HhcCCHHHHHHHHHHHHHhcC-CCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCC
Q 020640 130 LRSGTIETRSNAAAALFTLSA-LDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITH 193 (323)
Q Consensus 130 l~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~ 193 (323)
+.......-..+..++..+-. +.+....+.+. .+..+++++...... ..-+..|..+|..+
T Consensus 110 ~~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~-~I~~~i~ll~~~gr~--~~~L~~L~~lc~~~ 171 (207)
T PF01365_consen 110 FMQLQIGYGLGALDVLTEIFRDNPELCESISEE-HIEKFIELLRKHGRQ--PRYLDFLSSLCVCN 171 (207)
T ss_dssp HHCCCH-TTHHHHHHHHHHHTT-------------------------------------------
T ss_pred HHHhhccCCchHHHHHHHHHHCcHHHHHHhhHH-HHHHHHHHHHHcCCC--hHHHHHHhhhcccC
Confidence 333221111234445554433 23334444433 477888877763211 22444555555533
No 316
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=39.92 E-value=62 Score=25.71 Aligned_cols=66 Identities=15% Similarity=0.194 Sum_probs=37.3
Q ss_pred HHHHHhhcC---chH---HHHHHHHHHHhcC--------HHHHHHHHhc--CC--HHHHHHHHhccCChhHHHHHHHHHH
Q 020640 207 VILKKIMDG---VHV---DELLAILAMLSTN--------HRAVEEIGDL--GG--VSCMLRIIRESTCDRNKENCIAILH 268 (323)
Q Consensus 207 ~Lv~ll~~~---~~~---~~a~~~L~~l~~~--------~~~~~~i~~~--g~--i~~Lv~ll~~~~~~~~~~~a~~~L~ 268 (323)
.++++|... .+- ..=+..|..++.. +.-..++..+ || |+.|+.+|.+++ +.+...|+.+|.
T Consensus 41 ~lldLL~~RV~PGVD~AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGYNV~~LI~~L~~~d-~~lA~~Aa~aLk 119 (154)
T PF11791_consen 41 FLLDLLTNRVPPGVDEAAYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGYNVQPLIDLLKSDD-EELAEEAAEALK 119 (154)
T ss_dssp HHHHHHHHSS--TT-HHHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SSTTHHHHHHGG--G--TTTHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCCcHHHHHHHHcCCc-HHHHHHHHHHHH
Confidence 566666644 222 2224667777764 2333334432 54 999999997544 788888888887
Q ss_pred Hhccc
Q 020640 269 TICLS 273 (323)
Q Consensus 269 ~L~~~ 273 (323)
+-.--
T Consensus 120 ~TlLv 124 (154)
T PF11791_consen 120 NTLLV 124 (154)
T ss_dssp T--TT
T ss_pred hhHHH
Confidence 75443
No 317
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=39.82 E-value=1.2e+02 Score=23.15 Aligned_cols=49 Identities=20% Similarity=0.125 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHH
Q 020640 135 IETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAI 186 (323)
Q Consensus 135 ~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL 186 (323)
.+....+..++......- .-..+.+.+.++.+++++..+ ..+..|+.+|
T Consensus 100 ~~~~~~~L~~l~s~i~~~-~~~~i~~~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWISWI-PIELIINSNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTTTS--HHHHHSSSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-CHHHhccHHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 666667777777765522 344445555777777777443 3466666554
No 318
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=39.69 E-value=2.6e+02 Score=24.47 Aligned_cols=211 Identities=14% Similarity=0.044 Sum_probs=120.9
Q ss_pred cCCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccC
Q 020640 41 SATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETP 120 (323)
Q Consensus 41 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~ 120 (323)
+++...|.+|+..|......-+... .. ..-+..|+++.... =+|......++..+..|............
T Consensus 10 sed~~~R~ka~~~Ls~vL~~lp~~~---L~-~~ev~~L~~F~~~r----l~D~~~~~~~l~gl~~L~~~~~~~~~~~~-- 79 (262)
T PF14500_consen 10 SEDPIIRAKALELLSEVLERLPPDF---LS-RQEVQVLLDFFCSR----LDDHACVQPALKGLLALVKMKNFSPESAV-- 79 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHhh---cc-HHHHHHHHHHHHHH----hccHhhHHHHHHHHHHHHhCcCCChhhHH--
Confidence 3678889999999998886544222 22 23467777776532 22455555557777666543321111111
Q ss_pred CcHHHHHHHH--hcCCHHHHHHHHHHHHHhcCCCCchhhhh--ccCChHHHHHHhhh-cCHhHHHHHHHHHHHhccCCch
Q 020640 121 MVIPLLMDAL--RSGTIETRSNAAAALFTLSALDSNKEVIG--KSGALKPLIDLLDE-GHQSAMKDVASAIFNLCITHEN 195 (323)
Q Consensus 121 g~i~~Lv~ll--~~~~~~~~~~a~~~L~~L~~~~~~~~~i~--~~g~i~~Lv~lL~~-~~~~~~~~al~aL~~L~~~~~~ 195 (323)
.++..+..-. ++-....+..+..++..|..+. ...+. ..+.+..+++.+.. .||+....+-..+..+...-+.
T Consensus 80 ~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~--~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~ 157 (262)
T PF14500_consen 80 KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH--REALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI 157 (262)
T ss_pred HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh--HHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 0122222211 1224567778888888885432 22222 24567777777775 4888888888888777655542
Q ss_pred hHHHHhhCchHHHHHHhhc------------C-c-hHHHHHHHHH-HHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHH
Q 020640 196 KARAVRDGGVSVILKKIMD------------G-V-HVDELLAILA-MLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNK 260 (323)
Q Consensus 196 ~~~i~~~g~v~~Lv~ll~~------------~-~-~~~~a~~~L~-~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~ 260 (323)
....+.+.+.+.- + . .++.-...|. .+++.+.-.. -+++.|++-|.++. ..+|
T Consensus 158 ------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~-----~~~p~LleKL~s~~-~~~K 225 (262)
T PF14500_consen 158 ------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAP-----FAFPLLLEKLDSTS-PSVK 225 (262)
T ss_pred ------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHH-----HHHHHHHHHHcCCC-cHHH
Confidence 2233445554431 1 1 2333333333 4444444322 34789999998654 8899
Q ss_pred HHHHHHHHHhcccCh
Q 020640 261 ENCIAILHTICLSDR 275 (323)
Q Consensus 261 ~~a~~~L~~L~~~~~ 275 (323)
.-++.+|..++...+
T Consensus 226 ~D~L~tL~~c~~~y~ 240 (262)
T PF14500_consen 226 LDSLQTLKACIENYG 240 (262)
T ss_pred HHHHHHHHHHHHHCC
Confidence 999999998777553
No 319
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=38.80 E-value=61 Score=24.39 Aligned_cols=39 Identities=13% Similarity=0.178 Sum_probs=31.3
Q ss_pred CHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhc
Q 020640 74 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAE 118 (323)
Q Consensus 74 ~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~ 118 (323)
+|+.|++-|. +.++++...|..+|...+.++.+...++.
T Consensus 9 ~i~lLv~QL~------D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLY------DPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhc------CCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 6888999998 77899999999999998877655554444
No 320
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=38.27 E-value=1.6e+02 Score=21.72 Aligned_cols=75 Identities=15% Similarity=0.112 Sum_probs=47.6
Q ss_pred hHHHHHHHHhc-CCchhHHHHHHHHHHHhccCh-hhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640 31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMP-SFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 106 (323)
Q Consensus 31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l 106 (323)
+++..|.+.|. .++.++..|+..|-.+.++.. .+...+.. ...+..++++......+...+..++..+..++...
T Consensus 37 ~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~-~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 37 EAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVAS-NDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHH-hHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 46667777774 668888999999988886543 44555666 55555555541111111134678888888877654
No 321
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.23 E-value=93 Score=33.03 Aligned_cols=83 Identities=13% Similarity=0.056 Sum_probs=63.7
Q ss_pred CccccchhhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHH
Q 020640 21 NEEGITEADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDV 99 (323)
Q Consensus 21 ~~~~~~~~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a 99 (323)
+|+--.....++++.+++++- ..+..|.+-+..+..+++-++.+....-. .|+++.|+++..... +.+..+..++
T Consensus 898 npdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS-~gcvellleIiypfl---sgsspfLsha 973 (2799)
T KOG1788|consen 898 NPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTS-AGCVELLLEIIYPFL---SGSSPFLSHA 973 (2799)
T ss_pred CchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhc-ccHHHHHHHHhhhhh---cCCchHhhcc
Confidence 334334477899999999994 55889999999999999999998888888 999999999886433 3345566666
Q ss_pred HHHHHHhc
Q 020640 100 ITTLLNLS 107 (323)
Q Consensus 100 ~~~L~~ls 107 (323)
..++..|.
T Consensus 974 lkIvemLg 981 (2799)
T KOG1788|consen 974 LKIVEMLG 981 (2799)
T ss_pred HHHHHHHh
Confidence 66665553
No 322
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.04 E-value=5.3e+02 Score=26.67 Aligned_cols=115 Identities=14% Similarity=0.114 Sum_probs=68.1
Q ss_pred hhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHH-hccCChhHHHHHHHHHHHhcccChHh
Q 020640 201 RDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRII-RESTCDRNKENCIAILHTICLSDRTK 277 (323)
Q Consensus 201 ~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll-~~~~~~~~~~~a~~~L~~L~~~~~~~ 277 (323)
..|....+.+++.+- +-....+.+...+-.....-......++++.+..-+ ...+.+.+-..=..++..++..+++.
T Consensus 738 ~~~i~k~~~~~l~dvr~egl~avLkiveili~t~~il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~ 817 (978)
T KOG1993|consen 738 AFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKTNPILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSL 817 (978)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHH
Confidence 346677777777652 223445555566655544555556668888887554 33444777777888888888888876
Q ss_pred HHHHHhhcccHHHHHH-H----h--hc--CCHHHHHHHHHHHHHHhc
Q 020640 278 WKAMREEESTHGTISK-L----A--QD--GTARAKRKATGILERLKR 315 (323)
Q Consensus 278 ~~~~~~~~~~i~~L~~-l----l--~~--~~~~~~~~A~~~L~~l~~ 315 (323)
.-.++.+..-...++. + + .+ .+++-++--+.++..|-+
T Consensus 818 ~msvlqt~~~~d~~~~~li~~WI~~~~~I~~~k~rKl~~LalsSll~ 864 (978)
T KOG1993|consen 818 FMSVLQTKNTYDILIAMLIGNWILLFDHINHPKDRKLNTLALSSLLR 864 (978)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHcccCCCHHHhhHHHHHHHHHhc
Confidence 6666655554444442 2 1 11 255555555555555544
No 323
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=34.94 E-value=3.1e+02 Score=24.01 Aligned_cols=127 Identities=16% Similarity=0.187 Sum_probs=74.4
Q ss_pred hhHHHHHHHHhcCCc-----hhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHH
Q 020640 30 RDHFLSLLKKMSATL-----PDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLL 104 (323)
Q Consensus 30 ~~~i~~Lv~~l~~~~-----~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~ 104 (323)
-..+|.++..+.++. ......+..|..+|.... ...+..++.....+.- .+..+....++..|+
T Consensus 110 la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~---------~~~La~il~~ya~~~f--r~~~dfl~~v~~~l~ 178 (262)
T PF14225_consen 110 LALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG---------LPNLARILSSYAKGRF--RDKDDFLSQVVSYLR 178 (262)
T ss_pred HHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC---------CccHHHHHHHHHhcCC--CCHHHHHHHHHHHHH
Confidence 345566666664222 344567777777773211 2233334433332110 223445555555555
Q ss_pred HhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcC
Q 020640 105 NLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGH 175 (323)
Q Consensus 105 ~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~ 175 (323)
.--.. + . +. ..+..++++|.++..-.+.....+|+.+-.+-+.+.. .....+.++++++..+.
T Consensus 179 ~~f~P-~----~-~~-~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-~~~dlispllrlL~t~~ 241 (262)
T PF14225_consen 179 EAFFP-D----H-EF-QILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP-HGADLISPLLRLLQTDL 241 (262)
T ss_pred HHhCc-h----h-HH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC-cchHHHHHHHHHhCCcc
Confidence 32111 1 1 11 1456788999999999999999999999766555444 44558999999998753
No 324
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.86 E-value=2.1e+02 Score=29.90 Aligned_cols=90 Identities=12% Similarity=0.021 Sum_probs=64.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh----cCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCC-c-hh
Q 020640 123 IPLLMDALRSGTIETRSNAAAALFTL----SALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITH-E-NK 196 (323)
Q Consensus 123 i~~Lv~ll~~~~~~~~~~a~~~L~~L----~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~-~-~~ 196 (323)
...-..+|.+++..++..+..++..- +.+++---.++ ....+.++..+..+++-+...|..+|.+++... + .+
T Consensus 805 l~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlv-hq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~ 883 (1014)
T KOG4524|consen 805 LGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLV-HQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVA 883 (1014)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHH-HhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHH
Confidence 44455677788888888888887763 34443333333 337899999999999999999999999998755 3 34
Q ss_pred HHHHhhCchHHHHHHhhc
Q 020640 197 ARAVRDGGVSVILKKIMD 214 (323)
Q Consensus 197 ~~i~~~g~v~~Lv~ll~~ 214 (323)
.++.+. ++|.+-.++++
T Consensus 884 sR~l~d-vlP~l~~~~~~ 900 (1014)
T KOG4524|consen 884 SRFLED-VLPWLKHLCQD 900 (1014)
T ss_pred HHHHHH-HHHHHHHHHHH
Confidence 455554 88888877764
No 325
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=33.92 E-value=1.5e+02 Score=22.25 Aligned_cols=67 Identities=18% Similarity=0.313 Sum_probs=44.7
Q ss_pred cHHHHHHHHh-cCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhh-hcCHhH-HHHHHHHHHHhccCC
Q 020640 122 VIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLD-EGHQSA-MKDVASAIFNLCITH 193 (323)
Q Consensus 122 ~i~~Lv~ll~-~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~-~~~al~aL~~L~~~~ 193 (323)
++|.+...++ +..++.+..+.-++..|+....-... ++..+++.+- ...... ...++.+|..++...
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~-----~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDE-----VLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHH-----HHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 4677777888 67889999999999999865543333 4555555433 222233 477888888877544
No 326
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.57 E-value=4e+02 Score=25.31 Aligned_cols=31 Identities=26% Similarity=0.209 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCc
Q 020640 124 PLLMDALRSGTIETRSNAAAALFTLSALDSN 154 (323)
Q Consensus 124 ~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~ 154 (323)
..|.++|++.+++-.+.|-+.+.+|...++.
T Consensus 176 klL~rLLkSn~PeDLqaANkLIK~lVkeee~ 206 (594)
T KOG1086|consen 176 KLLARLLKSNHPEDLQAANKLIKTLVKEEEH 206 (594)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999999876654
No 327
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=33.51 E-value=3.7e+02 Score=29.94 Aligned_cols=203 Identities=12% Similarity=0.139 Sum_probs=0.0
Q ss_pred HhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhh
Q 020640 80 SPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIG 159 (323)
Q Consensus 80 ~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~ 159 (323)
.+|+ +.++.++..+......+-...+. ..... ++..|+..+.+++..-...|..+|..|+ ..+...+.
T Consensus 442 ~Ll~------S~e~~v~~FG~~~Y~~lF~~fds---~~qqe-Vv~~Lvthi~sg~~~ev~~aL~vL~~L~--~~~~~~l~ 509 (1426)
T PF14631_consen 442 SLLR------SKEPSVREFGSHLYKYLFKEFDS---YCQQE-VVGALVTHIGSGNSQEVDAALDVLCELA--EKNPSELQ 509 (1426)
T ss_dssp HHHT------SSSHHHHHHHHHHHHHHHHSS-H---HHHHH-HHHHHHHHHHH--HHHHHHHHHHHHHHH--HH-HHHHH
T ss_pred HHHh------CCCHHHHHHHHHHHHHHHhhccc---hhHHH-HHHHHHHHHcCCcHHHHHHHHHHHHHHH--hccHHHHH
Q ss_pred c-cCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcCchHHHHHHHHHHHhcCHHHHHHH
Q 020640 160 K-SGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEI 238 (323)
Q Consensus 160 ~-~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~l~~~~~~~~~i 238 (323)
. ...+..+++.+..=+..-.+.....|..|+........-++...--.+=+.|.+...+.+-.+++..+..-.......
T Consensus 510 ~fa~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~GIIGav~~i~~la~~~ 589 (1426)
T PF14631_consen 510 PFATFLKGILDYLDNLSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRIGIIGAVMMIKHLAAKN 589 (1426)
T ss_dssp HTHHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHHHHHh
Q ss_pred HhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccCh-------HhHHHHHhhcccHHHHHHHh
Q 020640 239 GDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR-------TKWKAMREEESTHGTISKLA 295 (323)
Q Consensus 239 ~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~-------~~~~~~~~~~~~i~~L~~ll 295 (323)
.+.+....=..-+.... .+.-..-...+...+...| +....++.....-+.+++|+
T Consensus 590 ~~~~~~~~~~~~l~~~~-~~q~~~Ll~l~~ss~~~sp~~~ALfYDELA~li~~~~l~~~~~~wi 652 (1426)
T PF14631_consen 590 SESDSSSSERSNLSDEQ-CKQATSLLELVQSSSEQSPEALALFYDELANLIQSRKLDPKFLEWI 652 (1426)
T ss_dssp ---------------HH-HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHS---HHHHHHH
T ss_pred ccCCccccccccCCHHH-HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCCHHHHHHH
No 328
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.04 E-value=3.5e+02 Score=27.56 Aligned_cols=57 Identities=11% Similarity=0.095 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHHhcc--cc----chhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 020640 90 GINPNLQEDVITTLLNLSI--HD----NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTL 148 (323)
Q Consensus 90 ~~~~~~~~~a~~~L~~ls~--~~----~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L 148 (323)
..|..++.+|+.++.++-- ++ +....+.++. ...+..+|+++-+.++..|..-+...
T Consensus 185 a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQ--f~~l~~LL~d~~p~VRS~a~~gv~k~ 247 (1005)
T KOG1949|consen 185 ARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQ--FEELYSLLEDPYPMVRSTAILGVCKI 247 (1005)
T ss_pred cCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHH--HHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 6689999999999988742 22 2345666653 67789999999888887765554443
No 329
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=32.91 E-value=4.7e+02 Score=26.87 Aligned_cols=65 Identities=12% Similarity=0.173 Sum_probs=44.0
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640 244 VSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 315 (323)
Q Consensus 244 i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 315 (323)
|+.|..+..+.= ..++..++.+++.|-.+.|+. +...+-.|++-+-+....+..+|.-.|.+|.+
T Consensus 306 ievLe~lS~D~L-~~vk~raL~ti~~lL~~kPEq------E~~LL~~lVNKlGDpqnKiaskAsylL~~L~~ 370 (988)
T KOG2038|consen 306 IEVLEELSKDPL-EEVKKRALKTIYDLLTNKPEQ------ENNLLVLLVNKLGDPQNKIASKASYLLEGLLA 370 (988)
T ss_pred HHHHHHHccccH-HHHHHHHHHHHHHHHhCCcHH------HHHHHHHHHHhcCCcchhhhhhHHHHHHHHHh
Confidence 444544444332 567888888888888777663 23455677777777777788888877777664
No 330
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=32.90 E-value=9e+02 Score=28.69 Aligned_cols=192 Identities=15% Similarity=0.119 Sum_probs=100.8
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-chhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHH
Q 020640 121 MVIPLLMDALRSGTIETRSNAAAALFTLSALDS-NKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARA 199 (323)
Q Consensus 121 g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i 199 (323)
+.+..+...+.++....+..+...+.+|+..+. ....-....-+..+-++-.++...+...+..-+..+... ....
T Consensus 565 ~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~---~~~~ 641 (2341)
T KOG0891|consen 565 DLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIIS---SPVL 641 (2341)
T ss_pred hhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHH---HHHH
Confidence 345556666677777888888888888876443 000001122222222232333232222222222211111 1111
Q ss_pred Hhh---CchHHHHHHhhcC--chHHHHHHHHHHHhcCHH-HHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhccc
Q 020640 200 VRD---GGVSVILKKIMDG--VHVDELLAILAMLSTNHR-AVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLS 273 (323)
Q Consensus 200 ~~~---g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~ 273 (323)
+.. ..+..++..+.+. .+...++.++..||.... .-...++ -.++.+.+.+.+.++..-+.++.+++.++...
T Consensus 642 i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~ 720 (2341)
T KOG0891|consen 642 ISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESS 720 (2341)
T ss_pred HHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhcc
Confidence 111 1223344444443 455666777777777432 1111222 44666667776544466688899999999887
Q ss_pred ChHhHHHHHhhcccHHHHHHHhhcC-CHHHHHHHHHHHHHHhcc
Q 020640 274 DRTKWKAMREEESTHGTISKLAQDG-TARAKRKATGILERLKRT 316 (323)
Q Consensus 274 ~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~A~~~L~~l~~~ 316 (323)
..-.........-++..|++.+..+ ..-++..+...+.++...
T Consensus 721 ~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~ 764 (2341)
T KOG0891|consen 721 TGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL 764 (2341)
T ss_pred cceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence 6433344455666777788777766 566666666666655443
No 331
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=31.87 E-value=1.2e+02 Score=27.11 Aligned_cols=55 Identities=22% Similarity=0.245 Sum_probs=42.6
Q ss_pred hhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccCh--------------hhHHHHhhhcCCHHHHHHhhc
Q 020640 28 ADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMP--------------SFRALFGESHDAIPQLLSPLS 83 (323)
Q Consensus 28 ~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~--------------~~~~~i~~~~g~i~~Lv~lL~ 83 (323)
.....+..+++.|. ++...|.+|+++|..++.+.- .|...+.+ .|+++.|+.+|+
T Consensus 57 ~~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~-~g~~~~l~~~L~ 126 (293)
T PF07923_consen 57 QRKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYE-CGGFPALWELLK 126 (293)
T ss_pred hHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHH-hhhhHHHHHHHH
Confidence 55578899999995 667889999999999986543 23345667 888888888887
No 332
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=31.50 E-value=92 Score=27.76 Aligned_cols=55 Identities=13% Similarity=0.204 Sum_probs=42.2
Q ss_pred hccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCC---------------chhHHHHhhCchHHHHHHhh
Q 020640 159 GKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITH---------------ENKARAVRDGGVSVILKKIM 213 (323)
Q Consensus 159 ~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~---------------~~~~~i~~~g~v~~Lv~ll~ 213 (323)
.+...+..+++-|..++...+..|+++|..++.+. .|...+.+.|+++.++.+|+
T Consensus 57 ~~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 57 QRKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred hHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 33557788888888888888999999999887654 13334557799999999886
No 333
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=31.14 E-value=1.6e+02 Score=19.57 Aligned_cols=38 Identities=11% Similarity=0.191 Sum_probs=30.1
Q ss_pred HHHHHhh-cccHHHHHHHhhcC--CHHHHHHHHHHHHHHhc
Q 020640 278 WKAMREE-ESTHGTISKLAQDG--TARAKRKATGILERLKR 315 (323)
Q Consensus 278 ~~~~~~~-~~~i~~L~~ll~~~--~~~~~~~A~~~L~~l~~ 315 (323)
...+-.. .++...|+.++.+. +..++..|...|+|.-.
T Consensus 5 L~~~~~~~p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~ 45 (77)
T PF03810_consen 5 LKQFQKQNPGFWQYLLQILSSNSQDPEVRQLAAILLKNLIK 45 (77)
T ss_dssp HHHHHHSCTCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 3455556 59999999999544 79999999999999764
No 334
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=30.33 E-value=5.9e+02 Score=25.79 Aligned_cols=66 Identities=9% Similarity=-0.007 Sum_probs=51.4
Q ss_pred HhhcCchHHHHHHHHHHHhc-CHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChH
Q 020640 211 KIMDGVHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT 276 (323)
Q Consensus 211 ll~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~ 276 (323)
.+.....+-.++..|..+.. .+...-.|.++..++.|++.|+.+.+..+...|+.+|..|--.-+.
T Consensus 78 ~~~~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~ 144 (668)
T PF04388_consen 78 YFVKPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPS 144 (668)
T ss_pred HHcCchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccc
Confidence 33344678889999999888 4777888999999999999998766566778888888887555443
No 335
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.89 E-value=6.2e+02 Score=25.88 Aligned_cols=141 Identities=15% Similarity=0.108 Sum_probs=80.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhc--CCCCc----hhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHH
Q 020640 127 MDALRSGTIETRSNAAAALFTLS--ALDSN----KEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAV 200 (323)
Q Consensus 127 v~ll~~~~~~~~~~a~~~L~~L~--~~~~~----~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~ 200 (323)
.+-|+..+..++..|+..+.++- .+++. ...+.+ .-...|.++|+++-+.++..|..-+.....-. ..++
T Consensus 180 ~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f---We~i 255 (1005)
T KOG1949|consen 180 WRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSKF---WEMI 255 (1005)
T ss_pred HHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH---HHHc
Confidence 34446678899999999999984 22222 233333 23677888899988888776665443321100 1111
Q ss_pred hhCchHHHHHHhhc----C---chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhccc
Q 020640 201 RDGGVSVILKKIMD----G---VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLS 273 (323)
Q Consensus 201 ~~g~v~~Lv~ll~~----~---~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~ 273 (323)
-...+..|+..+-+ + +++-.....|-.|..+|..-..+- -+++.|-..|.+.+ .+++.++...|..+-..
T Consensus 256 P~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le--~~Lpal~~~l~D~s-e~VRvA~vd~ll~ik~v 332 (1005)
T KOG1949|consen 256 PPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLE--QLLPALRYSLHDNS-EKVRVAFVDMLLKIKAV 332 (1005)
T ss_pred CHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHH--HHHHhcchhhhccc-hhHHHHHHHHHHHHHhh
Confidence 11111222222211 1 456666666667776665443332 13566666777544 88999999988887655
Q ss_pred C
Q 020640 274 D 274 (323)
Q Consensus 274 ~ 274 (323)
.
T Consensus 333 r 333 (1005)
T KOG1949|consen 333 R 333 (1005)
T ss_pred h
Confidence 4
No 336
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=29.08 E-value=3.3e+02 Score=22.43 Aligned_cols=137 Identities=9% Similarity=0.037 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhccCCchhHHH------H------hhCchHHHHHH-hhcC--chHHHHHHHHHHHhcCHHHHHHHHhc-
Q 020640 178 AMKDVASAIFNLCITHENKARA------V------RDGGVSVILKK-IMDG--VHVDELLAILAMLSTNHRAVEEIGDL- 241 (323)
Q Consensus 178 ~~~~al~aL~~L~~~~~~~~~i------~------~~g~v~~Lv~l-l~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~- 241 (323)
+|..|+.+|..++...+.|... . ..+.-+.|+.. +.|+ .++..|+.+|..|-.+...--...++
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 5667777777776663322211 1 11233445554 3444 56777888888776642111111110
Q ss_pred -------------------CCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHH--HHHhhcccHHHHHHHhhcCCH
Q 020640 242 -------------------GGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWK--AMREEESTHGTISKLAQDGTA 300 (323)
Q Consensus 242 -------------------g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~--~~~~~~~~i~~L~~ll~~~~~ 300 (323)
..=..|+..+....+..+....++++..|....|-.+- .++ ..++..+..++.+.+.
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll--~~~v~~v~~~l~~~d~ 159 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLL--TEVVTQVRPLLRHRDP 159 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHH--HHHHHHHHHHHhcCCC
Confidence 01234555555444577888999999999998874211 122 2455555666777888
Q ss_pred HHHHHHHHHHHHHhcc
Q 020640 301 RAKRKATGILERLKRT 316 (323)
Q Consensus 301 ~~~~~A~~~L~~l~~~ 316 (323)
.++-.+..++..+...
T Consensus 160 ~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 160 NVRVAALSCLGALLSV 175 (182)
T ss_pred cHHHHHHHHHHHHHcC
Confidence 8888888887777653
No 337
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=28.93 E-value=55 Score=19.64 Aligned_cols=40 Identities=20% Similarity=0.333 Sum_probs=25.9
Q ss_pred HHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHH
Q 020640 267 LHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGIL 310 (323)
Q Consensus 267 L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L 310 (323)
|..+...++. ++....+...+..-+.+.++.+++.|..+|
T Consensus 3 l~~iv~~dp~----ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 3 LSSIVEKDPT----LLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHhcCcc----ccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 4444444432 333445677777788888999999887653
No 338
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=28.92 E-value=2.1e+02 Score=22.86 Aligned_cols=79 Identities=13% Similarity=0.090 Sum_probs=51.1
Q ss_pred hhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHH-hhC-chHHHHH-HhhcC----chHHHHHHHHHHHhc
Q 020640 158 IGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAV-RDG-GVSVILK-KIMDG----VHVDELLAILAMLST 230 (323)
Q Consensus 158 i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~-~~g-~v~~Lv~-ll~~~----~~~~~a~~~L~~l~~ 230 (323)
+++....+.|++.+.+++..+...+++.++.+...- +..+. +.+ .++.++. ++.+. ..++.++.++..++.
T Consensus 69 ~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~--~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 69 LLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRF--RSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 344557778888877777888899999998886432 22222 112 3334444 55433 346779999999999
Q ss_pred CHHHHHHH
Q 020640 231 NHRAVEEI 238 (323)
Q Consensus 231 ~~~~~~~i 238 (323)
+|..-..+
T Consensus 147 ~p~~l~~l 154 (168)
T PF12783_consen 147 DPQFLVDL 154 (168)
T ss_pred ChhHHHHH
Confidence 87655444
No 339
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=28.31 E-value=2.9e+02 Score=21.56 Aligned_cols=74 Identities=18% Similarity=0.200 Sum_probs=52.9
Q ss_pred hHHHHHHHHhc--CCchhHHHHHHHHHHHhccCh-hhHHHHhhhcCCHHH-HHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640 31 DHFLSLLKKMS--ATLPDQTEAAKELRLLTKRMP-SFRALFGESHDAIPQ-LLSPLSESKCENGINPNLQEDVITTLLNL 106 (323)
Q Consensus 31 ~~i~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~~g~i~~-Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l 106 (323)
+++..|-+.|. .++.++..|+..|-.+.+.-. .....+.. .+++.. |++++.... ..+..++...+..+...
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eias-k~Fl~e~L~~~i~~~~---~~~~~Vk~kil~li~~W 113 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAK-KDFIKDVLVKLINPKN---NPPTIVQEKVLALIQAW 113 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHH-HHhhhHHHHHHHcccC---CCcHHHHHHHHHHHHHH
Confidence 67888888885 367788888887777775432 44566777 788887 899886321 23468899999999877
Q ss_pred cc
Q 020640 107 SI 108 (323)
Q Consensus 107 s~ 108 (323)
+.
T Consensus 114 ~~ 115 (141)
T cd03565 114 AD 115 (141)
T ss_pred HH
Confidence 63
No 340
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.22 E-value=4.2e+02 Score=27.85 Aligned_cols=92 Identities=14% Similarity=0.117 Sum_probs=62.9
Q ss_pred hhHHHHHHHHhc-CCchhHHHHHHHHHHH----hccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHH
Q 020640 30 RDHFLSLLKKMS-ATLPDQTEAAKELRLL----TKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLL 104 (323)
Q Consensus 30 ~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l----~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~ 104 (323)
.+.+.+-..+|+ .+...|.+|+.++..- +......-..+. -..+.++..+. ..|+-+...|..++.
T Consensus 802 ~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvh---q~W~~vie~~~------~k~~L~v~~a~~~i~ 872 (1014)
T KOG4524|consen 802 LKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVH---QTWPSVIECLL------CKDPLIVQRAFSCIE 872 (1014)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHH---hhhhHHHHHHh------cCchHHHHHHHHHHH
Confidence 344555666665 5677889998888653 222222222233 47899999999 778999999999999
Q ss_pred Hhccccc--hhhhhhccCCcHHHHHHHHhc
Q 020640 105 NLSIHDN--NKKLVAETPMVIPLLMDALRS 132 (323)
Q Consensus 105 ~ls~~~~--~~~~i~~~~g~i~~Lv~ll~~ 132 (323)
+++.... -+..+.+. ++|.+-.++..
T Consensus 873 ~m~~~sgDFv~sR~l~d--vlP~l~~~~~~ 900 (1014)
T KOG4524|consen 873 QMGKYSGDFVASRFLED--VLPWLKHLCQD 900 (1014)
T ss_pred HHHHHhhhHHHHHHHHH--HHHHHHHHHHH
Confidence 9987655 46677764 68877766643
No 341
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=28.20 E-value=3.3e+02 Score=22.25 Aligned_cols=144 Identities=13% Similarity=0.047 Sum_probs=84.0
Q ss_pred ChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc-CHHHHHHHH
Q 020640 163 ALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIG 239 (323)
Q Consensus 163 ~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~-~~~~~~~i~ 239 (323)
-++.+++++.+.+..++..|+..+.-.....=.-.. -.+|.|+.+..++ .++..|...+..+.. ++..-..=.
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~ 84 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK----QCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRY 84 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH----HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 356777777788889999999988765322110000 1567788888776 678889999998876 443322222
Q ss_pred hcCCHHHHHHHHhc-cCChh--H---HHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcC--------CHHHHHH
Q 020640 240 DLGGVSCMLRIIRE-STCDR--N---KENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG--------TARAKRK 305 (323)
Q Consensus 240 ~~g~i~~Lv~ll~~-~~~~~--~---~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~--------~~~~~~~ 305 (323)
..| +..-.++-+. ..+.. . ...-..-++.+...+...++. ++..|++..... .+.-...
T Consensus 85 ~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~------Fl~~l~k~f~~~~~~~~~~~~~~~l~~ 157 (187)
T PF12830_consen 85 SEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRK------FLKSLLKQFDFDLTKLSSESSPSDLDF 157 (187)
T ss_pred HHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHH------HHHHHHHHHHhhccccccccchhHHHH
Confidence 223 3333333332 11111 1 566777777877755443333 455666655443 3444566
Q ss_pred HHHHHHHHhcch
Q 020640 306 ATGILERLKRTV 317 (323)
Q Consensus 306 A~~~L~~l~~~~ 317 (323)
...+..||+.++
T Consensus 158 ~~Fla~nLA~l~ 169 (187)
T PF12830_consen 158 LLFLAENLATLP 169 (187)
T ss_pred HHHHHHHHhcCC
Confidence 667777776543
No 342
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=27.99 E-value=2.2e+02 Score=23.44 Aligned_cols=71 Identities=20% Similarity=0.220 Sum_probs=44.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhc--cCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCc
Q 020640 123 IPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK--SGALKPLIDLLDEGHQSAMKDVASAIFNLCITHE 194 (323)
Q Consensus 123 i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~ 194 (323)
++.+++=|+.....-..-|...+..|... ....++.. ...+.+|-..|.+.++++...++.+|..|....+
T Consensus 40 Lpif~dGL~Et~~Py~flA~~g~~dll~~-~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 40 LPIFFDGLRETEHPYRFLARQGIKDLLER-GGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred HHHHHhhhhccCccHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 44444444444555555566666666544 22333333 4566667777778899999999999999865444
No 343
>PRK10715 flk flagella biosynthesis regulator; Provisional
Probab=27.78 E-value=1.7e+02 Score=26.35 Aligned_cols=60 Identities=12% Similarity=0.135 Sum_probs=42.0
Q ss_pred hHHHHHHcCCCCCCCCCCCCc-cccchhhhhHHHHHHHHhc---C-CchhHHHHHHHHHHHhccC
Q 020640 2 ISQWCRSQGIELPNSVQYINE-EGITEADRDHFLSLLKKMS---A-TLPDQTEAAKELRLLTKRM 61 (323)
Q Consensus 2 ~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~Lv~~l~---~-~~~~~~~a~~~L~~l~~~~ 61 (323)
+--|+.+|.-++|-|.++... -+..|+++..++.||..+. + .+...=..+..+..+..++
T Consensus 138 vl~~Lq~gql~iPqpq~~~~tDRPLlPAeh~tLnqLVtrLaA~Tge~~a~IWq~l~~~~Gvks~~ 202 (335)
T PRK10715 138 VLTLLQNGQLSIPQPQQRPATDRPLLPAEHNALNQLVTKLAAATGEQPKKIWQSMLELSGVKSGE 202 (335)
T ss_pred HHHHHHcCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHcCCCCCC
Confidence 346999999999999988555 4567799999999999994 2 2333334555555555443
No 344
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.64 E-value=91 Score=28.64 Aligned_cols=64 Identities=19% Similarity=0.239 Sum_probs=50.8
Q ss_pred HHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccc-hhhhhhc
Q 020640 50 AAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN-NKKLVAE 118 (323)
Q Consensus 50 a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~ 118 (323)
..+.|.++|...++.+..+.+ .||++.+++-..-. +.||-+++...-++++|..++. |+..+.+
T Consensus 376 vir~ia~lcyk~~~~qD~vre-l~GvaLIlsncnid----D~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRE-LNGVALILSNCNID----DWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHh-cCCeEEeeccCccC----CCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 567899999999999999999 99999888665432 6789999999999999877665 5555543
No 345
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=27.61 E-value=6.7e+02 Score=25.58 Aligned_cols=88 Identities=18% Similarity=0.057 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHH
Q 020640 46 DQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPL 125 (323)
Q Consensus 46 ~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~ 125 (323)
+.......|.+++..+++.-..+....++...++.++- +++.++...|..+|..... .+.| .+.
T Consensus 497 ~~~~~~~il~rls~~~~~~L~~l~~d~~~~~~i~s~lf------sp~~~l~qaA~~llk~~~d-~~~R---------~e~ 560 (727)
T PF12726_consen 497 ITDLISQILERLSDFDPSHLKELLSDPDAAQAIWSLLF------SPDDDLYQAAQDLLKQAFD-VDGR---------LEA 560 (727)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHcCcchhhHHHhhee------CCChHHHHHHHHHHHHHhc-CCcH---------HHH
Confidence 44556677777777777665554433889999999998 7789999999999998874 3333 233
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhc
Q 020640 126 LMDALRSGTIETRSNAAAALFTLS 149 (323)
Q Consensus 126 Lv~ll~~~~~~~~~~a~~~L~~L~ 149 (323)
+-.++++.-.........+|..+.
T Consensus 561 i~~ll~~~~~~tL~ai~~~l~~~~ 584 (727)
T PF12726_consen 561 IQALLQSNFSPTLSAINWSLRQLT 584 (727)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Confidence 334555544455555555555554
No 346
>PF12331 DUF3636: Protein of unknown function (DUF3636) ; InterPro: IPR022093 This domain family is found in eukaryotes, and is approximately 160 amino acids in length.
Probab=27.45 E-value=1.1e+02 Score=24.19 Aligned_cols=54 Identities=7% Similarity=0.133 Sum_probs=39.2
Q ss_pred cCChHHHHHHhhhc--------------CHhHHHHHHHHHHHhccCCchhHHHHhh-CchHHHHHHhhc
Q 020640 161 SGALKPLIDLLDEG--------------HQSAMKDVASAIFNLCITHENKARAVRD-GGVSVILKKIMD 214 (323)
Q Consensus 161 ~g~i~~Lv~lL~~~--------------~~~~~~~al~aL~~L~~~~~~~~~i~~~-g~v~~Lv~ll~~ 214 (323)
.-+|..+..+|.+. .-.++..|++.|..++.++-+...+..+ .+++.|+..|.+
T Consensus 79 ~~iIdrvt~~L~E~P~~d~~~~~~t~~~i~~lRl~aL~~L~~fa~s~~G~~~LA~h~~Ai~RLv~~L~~ 147 (149)
T PF12331_consen 79 NYIIDRVTNLLSEPPKVDEGWAPYTPAEICTLRLEALRTLTSFAFSPFGALQLASHPTAIPRLVRALHD 147 (149)
T ss_pred HHHHHHHHHHccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHHhCchhHHHHHHHHHc
Confidence 34566666666542 1257888899999999988877777665 788888888764
No 347
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=27.44 E-value=4.2e+02 Score=23.16 Aligned_cols=30 Identities=20% Similarity=0.129 Sum_probs=21.4
Q ss_pred HHHHhhcccccCCCCCHHHHHHHHHHHHHhcccc
Q 020640 77 QLLSPLSESKCENGINPNLQEDVITTLLNLSIHD 110 (323)
Q Consensus 77 ~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~ 110 (323)
-|+.+|.++ .+++.+...++.+|.+|+..-
T Consensus 45 DLiPiL~~~----~~~~~l~~~~l~LLV~LT~P~ 74 (266)
T PF04821_consen 45 DLIPILISY----KDDDKLFLACLRLLVNLTWPI 74 (266)
T ss_pred hHHHHHHhc----cCchHHHHHHHHHHHHhCCCH
Confidence 455555544 447889999999999998643
No 348
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=25.54 E-value=5e+02 Score=23.41 Aligned_cols=60 Identities=12% Similarity=0.127 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHhcC--HHHHHHHHhcCCHHHHHHHHhccC-ChhHHHHHHHHHHHhcccChHh
Q 020640 217 HVDELLAILAMLSTN--HRAVEEIGDLGGVSCMLRIIREST-CDRNKENCIAILHTICLSDRTK 277 (323)
Q Consensus 217 ~~~~a~~~L~~l~~~--~~~~~~i~~~g~i~~Lv~ll~~~~-~~~~~~~a~~~L~~L~~~~~~~ 277 (323)
.....+++|..+..+ +...... ....-+.++.++.+.. +..+++.|..++..+...+++.
T Consensus 178 d~~w~~~al~~~~~~~~~~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~ 240 (339)
T PF12074_consen 178 DLCWLLRALEALLSDHPSELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL 240 (339)
T ss_pred HHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH
Confidence 344455666655553 1222222 2233577888888651 4889999999999999988763
No 349
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=25.54 E-value=59 Score=17.22 Aligned_cols=25 Identities=36% Similarity=0.441 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhh
Q 020640 138 RSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLD 172 (323)
Q Consensus 138 ~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~ 172 (323)
+..++++|..+.. ..+++.|++.|+
T Consensus 2 R~~Aa~aLg~igd----------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 2 RRAAARALGQIGD----------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHGGG-S----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC----------HHHHHHHHHHhc
Confidence 4556666666533 336777777665
No 350
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=25.19 E-value=2.5e+02 Score=28.37 Aligned_cols=58 Identities=14% Similarity=0.100 Sum_probs=49.6
Q ss_pred CchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640 43 TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 106 (323)
Q Consensus 43 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l 106 (323)
.+..|..++..|..+....+..-..|.+ ...++.|++.|.. +.+..+...|+.+|..|
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~-t~Lf~~LLk~L~~-----D~~~~~~~~al~~Liml 138 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQ-TPLFKSLLKCLQF-----DTSITVVSSALLVLIML 138 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhc-ChhHHHHHHHHhh-----cccHHHHHHHHHHHHHH
Confidence 4678999999999999988888888888 8999999999985 66788888888888765
No 351
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=24.95 E-value=5.2e+02 Score=23.37 Aligned_cols=56 Identities=14% Similarity=0.154 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHH-HhhcC-CHHHHHHHHHHHHHHhcc
Q 020640 259 NKENCIAILHTICLSDRTKWKAMREEESTHGTISK-LAQDG-TARAKRKATGILERLKRT 316 (323)
Q Consensus 259 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~-ll~~~-~~~~~~~A~~~L~~l~~~ 316 (323)
++.-|+..|...+..-+..++.+ ...++..|.+ ++..+ ...++.-|...|+.|.+.
T Consensus 303 lRd~AA~ll~yV~~~F~~~YktL--kPRvtrTllKafLD~~k~~sT~YGalkgls~l~ke 360 (450)
T COG5095 303 LRDVAADLLKYVFSNFSSSYKTL--KPRVTRTLLKAFLDREKTESTQYGALKGLSILSKE 360 (450)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhh--chHHHHHHHHHHHhcccccchhhhhhhhhhhhchh
Confidence 78889999999888777655554 3566666666 56655 566677788888877764
No 352
>PLN03205 ATR interacting protein; Provisional
Probab=24.17 E-value=6.1e+02 Score=23.92 Aligned_cols=176 Identities=11% Similarity=0.105 Sum_probs=96.0
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-Cchhhhhc--cCChHHHHHHhhh-----cCHhHHHHHHHHHHHhccCC
Q 020640 122 VIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGK--SGALKPLIDLLDE-----GHQSAMKDVASAIFNLCITH 193 (323)
Q Consensus 122 ~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~--~g~i~~Lv~lL~~-----~~~~~~~~al~aL~~L~~~~ 193 (323)
.++.|+.+...++..+.-.+.+.|..+..+- .++..+-. .--.-.|++++.. ....++..|+..+--+....
T Consensus 324 LlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmss 403 (652)
T PLN03205 324 LVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMST 403 (652)
T ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhcc
Confidence 4556777878888777777777777664321 11111111 1123345555432 34567777777765555444
Q ss_pred c---hhHHHHhhCchHHHHHHhhcC---chHHHHHHHHHHHhcCHHHHHHHH-----------hc---------CCH---
Q 020640 194 E---NKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHRAVEEIG-----------DL---------GGV--- 244 (323)
Q Consensus 194 ~---~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~~~~~~~i~-----------~~---------g~i--- 244 (323)
+ .|..+...-+.+.+-.+|+.. .+++.++..|.-|-.+|..-..|. ++ .++
T Consensus 404 na~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCpklL~iFcSg~~e~~~ad~eNd~~~n~st~k~fSsI 483 (652)
T PLN03205 404 DAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCPKLYDRFDSLHEEKNSSDTENDSEGNFFALEAFGKI 483 (652)
T ss_pred chhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCcHHHHHHhcCCccccccccccccccccccHHHHHHH
Confidence 3 344455555677788888854 577888776666655443333332 00 123
Q ss_pred -HHHHHHHhcc----CChhHHHHHHHHHHHhcccChHhHH-----HHHhhcccHHHHHHHhhc
Q 020640 245 -SCMLRIIRES----TCDRNKENCIAILHTICLSDRTKWK-----AMREEESTHGTISKLAQD 297 (323)
Q Consensus 245 -~~Lv~ll~~~----~~~~~~~~a~~~L~~L~~~~~~~~~-----~~~~~~~~i~~L~~ll~~ 297 (323)
..|.+.+..+ .+-++...++..|+.+++....-+. .+..+.+++-.+++.+-+
T Consensus 484 legLAeCiac~~~s~~dIeLck~aiimLAflASSGk~GfEilv~hkl~~~~NFLmLILqvLvS 546 (652)
T PLN03205 484 FEGLADCLTSPRKTSEDLELCRNVIMILALAASSGNSGYELLSNHKLPQDSNFLMLILHLLVA 546 (652)
T ss_pred HHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCCCCceeeecccCCCCccHHHHHHHHHHH
Confidence 3333333321 1245778888889888876642121 122355666666665433
No 353
>KOG2152 consensus Sister chromatid cohesion protein [Cell cycle control, cell division, chromosome partitioning]
Probab=24.13 E-value=5.4e+02 Score=26.29 Aligned_cols=56 Identities=13% Similarity=0.116 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHH--hcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcc
Q 020640 217 HVDELLAILAML--STNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICL 272 (323)
Q Consensus 217 ~~~~a~~~L~~l--~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~ 272 (323)
+...|+.++.-- |..|.-|..+..+|++..+++.+.+.+.+..-.-+..+|..|-.
T Consensus 348 m~trCLSaISla~Kc~~p~FR~~lRa~G~v~~vfkalmDs~~~d~Lsl~tsalMylLs 405 (865)
T KOG2152|consen 348 METRCLSAISLADKCVMPDFRMHLRAHGMVDAVFKALMDSHEDDLLSLCTSALMYLLS 405 (865)
T ss_pred HHHHHHhhhhhhhhccChHHHHHHHHcccHHHHHHHHhccccchhhHHHHHHHHHHHh
Confidence 344455444322 33489999999999999999999876544443333334444433
No 354
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=24.11 E-value=5.4e+02 Score=23.23 Aligned_cols=210 Identities=10% Similarity=0.051 Sum_probs=102.4
Q ss_pred HHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhc
Q 020640 96 QEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRS-GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEG 174 (323)
Q Consensus 96 ~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~-~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~ 174 (323)
+...+.+|..+.. .+.... ++..+..++.. .++......+.++..=...- ..-....++..+.+-+.+.
T Consensus 4 r~~~~~~L~~l~~-~~~s~~------i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~k 73 (339)
T PF12074_consen 4 RVLHASMLSSLPS-SSLSSK------IVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKDK 73 (339)
T ss_pred HHHHHHHHHhCCC-cchHHH------HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcCC
Confidence 3445566666655 222222 45556666654 57777777777665533211 1112233455555656666
Q ss_pred CHhHHHHHHHHHHHhccCCch--hHHHHhhCchHHHHHHhhcC------chH-HHHHHHHHHHh--c--CHHHHH--HH-
Q 020640 175 HQSAMKDVASAIFNLCITHEN--KARAVRDGGVSVILKKIMDG------VHV-DELLAILAMLS--T--NHRAVE--EI- 238 (323)
Q Consensus 175 ~~~~~~~al~aL~~L~~~~~~--~~~i~~~g~v~~Lv~ll~~~------~~~-~~a~~~L~~l~--~--~~~~~~--~i- 238 (323)
.+.+|+.-+..+........+ ....+. ..++.|+..+++. ... ....++..-++ . .+.... ..
T Consensus 74 k~~vR~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~ 152 (339)
T PF12074_consen 74 KPPVRRAWLLCLGEALWESPNSDSLKFAE-PFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISF 152 (339)
T ss_pred CCcHHHHHHHHHHHHHhhccCchHHHHHH-HHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhh
Confidence 666888888888777662222 222222 3777888887642 111 11112222222 1 111111 00
Q ss_pred --HhcCCHHH-HH--HHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcC--CHHHHHHHHHHHH
Q 020640 239 --GDLGGVSC-ML--RIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG--TARAKRKATGILE 311 (323)
Q Consensus 239 --~~~g~i~~-Lv--~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~A~~~L~ 311 (323)
.-.+-=+. |. ++...-.+++-..-.+.++..+..+.+.....-. ...+-..++.++-+. ...+++.|...|+
T Consensus 153 ~~l~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~ 231 (339)
T PF12074_consen 153 WSLALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAALSALK 231 (339)
T ss_pred hhhccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 00000011 00 1221101133344455566555554433211111 235677788888777 8999999999998
Q ss_pred HHhcch
Q 020640 312 RLKRTV 317 (323)
Q Consensus 312 ~l~~~~ 317 (323)
.+....
T Consensus 232 ~l~~~~ 237 (339)
T PF12074_consen 232 KLYASN 237 (339)
T ss_pred HHHHhC
Confidence 876533
No 355
>KOG2312 consensus Predicted transcriptional regulator, contains ARID domain [Transcription]
Probab=23.74 E-value=7.9 Score=38.06 Aligned_cols=150 Identities=13% Similarity=0.044 Sum_probs=89.2
Q ss_pred HHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHH
Q 020640 101 TTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMK 180 (323)
Q Consensus 101 ~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~ 180 (323)
.+.++||++..|+..+....-....|+-.-..........+..+..||+... -.++-.-..+-.+.+-+.+.+..+..
T Consensus 15 tv~r~LSf~~~n~~~~~~~~p~~~~lVm~a~~~ws~~~Vqal~s~~nlaqpt--~~e~S~~~~L~t~t~Gi~S~drflim 92 (847)
T KOG2312|consen 15 TVSRMLSFKRQNQQQHSPAPPPQQVLVMVAQPQWSQMQVQALQSNANLAQPT--SGESSLIKQLLTPTRGISSPDRFLIM 92 (847)
T ss_pred eeeeeeccchhhhcccCCCCChhheeeeecccccchhhhHhhhhhcccCCcc--hhhhhHHHHHhhhccCCCCCCceeEe
Confidence 3567889999999999887655555555544455677888999999998721 11111111122222233445777888
Q ss_pred HHHHHHHHhccCCchhHHHHhh---CchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHh-cCCHHHHHHHHh
Q 020640 181 DVASAIFNLCITHENKARAVRD---GGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGD-LGGVSCMLRIIR 252 (323)
Q Consensus 181 ~al~aL~~L~~~~~~~~~i~~~---g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~-~g~i~~Lv~ll~ 252 (323)
.++..|.+||...+|-..|.+. ......+..+.-. -+....+..|..|+.- ......|.+ .+.+..||.+..
T Consensus 93 r~lEIl~~lcgrEgN~qvIc~~l~~d~y~~iv~~ltl~Dvllvi~Tle~LyalsemGdvac~~Is~v~klidqLVsl~t 171 (847)
T KOG2312|consen 93 RALEILPPLCGREGNPQVICQVLSNDAYGFIVQGLTLADVLLVIQTLEQLYALSEMGDVACVPISNVQKLIDQLVSLST 171 (847)
T ss_pred eccccCcccccCCCCceeehhhhchHHHHHHHhccchhHeehhhhhhhHHhcccccCCccchhhhhhhhhhhhhhccch
Confidence 8999999999988776655442 3334444433322 2344555666666553 223333433 366777777665
No 356
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=23.56 E-value=4.1e+02 Score=24.87 Aligned_cols=72 Identities=4% Similarity=0.132 Sum_probs=54.0
Q ss_pred CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhh-cCCHHHHHHHHHHHHHHhc
Q 020640 243 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQ-DGTARAKRKATGILERLKR 315 (323)
Q Consensus 243 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~A~~~L~~l~~ 315 (323)
+++.|.+-+...+ +.+...|+.++-.+..+-...++.-+-...+...|..++. +..+.++++-..++...++
T Consensus 46 ~lk~i~KRln~~d-phV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 46 CLKAIMKRLNHKD-PHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHhcCCC-cchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 4677777777544 8899999999998887665555555556789999999998 5588888887777766553
No 357
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=22.93 E-value=8.5e+02 Score=25.13 Aligned_cols=157 Identities=16% Similarity=0.057 Sum_probs=93.5
Q ss_pred HHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCC--CCHHHHHHHHHHHHHhcc---ccchhhhhhccCCc
Q 020640 48 TEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENG--INPNLQEDVITTLLNLSI---HDNNKKLVAETPMV 122 (323)
Q Consensus 48 ~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~--~~~~~~~~a~~~L~~ls~---~~~~~~~i~~~~g~ 122 (323)
..|+..+.....+.++ .-. .|.++-+.+.|....+.++ +++.-.+.|+..+.++.. ....-.-+.+.- +
T Consensus 388 laal~fl~~~~sKrke---~Tf--qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~f-i 461 (970)
T COG5656 388 LAALFFLIISKSKRKE---ETF--QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYF-I 461 (970)
T ss_pred HHHHHHHHHHhcccch---hhh--hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHH-H
Confidence 4455555555543322 112 3788999999954322111 244555666667666643 112223333332 4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhh
Q 020640 123 IPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRD 202 (323)
Q Consensus 123 i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~ 202 (323)
++.++-.++++..-.+.++|..+..++.+-.... .-..+.+...+.+.+.+-.++..|+-||.-+-.+++....+-++
T Consensus 462 v~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~--ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sah 539 (970)
T COG5656 462 VNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNG--ILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAH 539 (970)
T ss_pred HHHhhHhhcCcccchHHHHHHHHHHHHHhcccch--HHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhh
Confidence 5555666688888889999999999954322222 22345667777788888889999999999888877655555444
Q ss_pred CchHHHHHHhh
Q 020640 203 GGVSVILKKIM 213 (323)
Q Consensus 203 g~v~~Lv~ll~ 213 (323)
+.+.+-++|+
T Consensus 540 -Vp~tmekLLs 549 (970)
T COG5656 540 -VPETMEKLLS 549 (970)
T ss_pred -hhHHHHHHHH
Confidence 3333334443
No 358
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=22.89 E-value=1.4e+02 Score=19.13 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=16.9
Q ss_pred hHHHHHHcCCCCCCCCCCCCccccch
Q 020640 2 ISQWCRSQGIELPNSVQYINEEGITE 27 (323)
Q Consensus 2 ~~~w~~~~~~~~~~~~~~~~~~~~~~ 27 (323)
|++|+.+ +..+|....+.+.+...+
T Consensus 28 i~~~~~~-~~~cP~~~~~~~~~~l~~ 52 (63)
T smart00504 28 IEKWLLS-HGTDPVTGQPLTHEDLIP 52 (63)
T ss_pred HHHHHHH-CCCCCCCcCCCChhhcee
Confidence 6788866 567888777776554444
No 359
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=22.88 E-value=1.1e+02 Score=16.28 Aligned_cols=27 Identities=37% Similarity=0.411 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhh
Q 020640 137 TRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE 173 (323)
Q Consensus 137 ~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~ 173 (323)
++..++.+|.++.. ..+++.|++.+.+
T Consensus 3 vR~~aa~aLg~~~~----------~~a~~~L~~~l~d 29 (30)
T smart00567 3 VRHEAAFALGQLGD----------EEAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHcCC----------HhHHHHHHHHhcC
Confidence 56677778777732 2356667666653
No 360
>PF12331 DUF3636: Protein of unknown function (DUF3636) ; InterPro: IPR022093 This domain family is found in eukaryotes, and is approximately 160 amino acids in length.
Probab=22.66 E-value=4e+02 Score=21.20 Aligned_cols=37 Identities=22% Similarity=0.148 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhc
Q 020640 46 DQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLS 83 (323)
Q Consensus 46 ~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~ 83 (323)
+|.+|+..|..++.... ....+..+..+++.|+..|.
T Consensus 110 lRl~aL~~L~~fa~s~~-G~~~LA~h~~Ai~RLv~~L~ 146 (149)
T PF12331_consen 110 LRLEALRTLTSFAFSPF-GALQLASHPTAIPRLVRALH 146 (149)
T ss_pred HHHHHHHHHHHHHcCcH-HHHHHHhCchhHHHHHHHHH
Confidence 68889999999997554 55555554789999999886
No 361
>KOG4337 consensus Microsomal triglyceride transfer protein [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.87 E-value=8.4e+02 Score=24.67 Aligned_cols=146 Identities=16% Similarity=0.153 Sum_probs=0.0
Q ss_pred ChHHHHHHhhh-cCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC-chHHHHHHHHHHHhcCHHHHHHH-H
Q 020640 163 ALKPLIDLLDE-GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG-VHVDELLAILAMLSTNHRAVEEI-G 239 (323)
Q Consensus 163 ~i~~Lv~lL~~-~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~-~~~~~a~~~L~~l~~~~~~~~~i-~ 239 (323)
++|.|++++.. +..+....+...|+-.+....+...+.+. ++.-+... .+-+..+..|.+.-........- +
T Consensus 360 VLpqlvdalg~vqT~ds~~a~~dfL~~~S~sss~~~~l~e~-----~ly~lg~a~hp~ee~i~~l~~k~~~~Si~s~~~~ 434 (896)
T KOG4337|consen 360 VLPQLVDALGGVQTADSITAADDFLFGISQSSSNNEKLHEQ-----LLYWLGSADHPSEETIATLLNKRCEASISSLNSC 434 (896)
T ss_pred HHHHHHHHhccccchhhHHHHHHHHhccccccchhHHHHHH-----HHHHhhccCCCcHHHHHHHHHHHhhhhhhhhHHH
Q ss_pred hcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHh------------hcccHHHHHHHhhcC-CHHHHHHH
Q 020640 240 DLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMRE------------EESTHGTISKLAQDG-TARAKRKA 306 (323)
Q Consensus 240 ~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~------------~~~~i~~L~~ll~~~-~~~~~~~A 306 (323)
++|.+...-.+.++.....+...++.-+.++--..-...+..++ ...+++.|.+-..+| .|+....|
T Consensus 435 re~v~~iv~tlir~~~~~gve~~~l~e~~~~ilgglt~aek~~~s~~y~~Al~N~~lPa~i~~Lle~a~sGe~p~~s~~a 514 (896)
T KOG4337|consen 435 REGVETIVNTLIRDLTAGGVEVRVLEELENIILGGLTFAEKFIESEDYQKALLNVILPAAIKNLLETAVSGEKPEQSMRA 514 (896)
T ss_pred hhhHHHHHHHHHHHhhCCCcccHHHHHHHHHHhccchhcccccchHHHHHHHHhccChhhHHHHHHHHhccCCcchhHHH
Q ss_pred HHHHHHH
Q 020640 307 TGILERL 313 (323)
Q Consensus 307 ~~~L~~l 313 (323)
..+|..+
T Consensus 515 tsAl~~f 521 (896)
T KOG4337|consen 515 TSALAEF 521 (896)
T ss_pred HHHHHhc
No 362
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=21.12 E-value=5.1e+02 Score=28.90 Aligned_cols=76 Identities=20% Similarity=0.244 Sum_probs=44.0
Q ss_pred chhhhhc-cCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcCchHHHHHHHHHHHhcC
Q 020640 154 NKEVIGK-SGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTN 231 (323)
Q Consensus 154 ~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~l~~~ 231 (323)
|+..-.+ .|-+.-|+.-|..- +...-.+..|..+-...+....++.+|-+..++.+|+...-.-+.+.+|+.+|.+
T Consensus 550 nr~ncaqfs~~ldwliskldrl--eassgilevlhcil~espealnii~eghiksiislldkhgrnhkvldilcslc~c 626 (5019)
T KOG2243|consen 550 NRKNCAQFSGNLDWLISKLDRL--EASSGILEVLHCILTESPEALNIIAEGHIKSIISLLDKHGRNHKVLDILCSLCLC 626 (5019)
T ss_pred chhhHHHhcCcHhHHHHHHHHh--hhccchHhHhhhhhcCCHHHHhHHhhhhHHHHHHHHHhcCCcccHHHHHHHHHhh
Confidence 3444333 45566665554431 1111123334333344455667788899999999998764445567778888775
No 363
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=21.02 E-value=1.1e+03 Score=25.92 Aligned_cols=228 Identities=14% Similarity=0.149 Sum_probs=110.1
Q ss_pred CHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccc---hhhhhhccCCcHHHHHHHH---hcC-------CHHHHHH
Q 020640 74 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN---NKKLVAETPMVIPLLMDAL---RSG-------TIETRSN 140 (323)
Q Consensus 74 ~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~---~~~~i~~~~g~i~~Lv~ll---~~~-------~~~~~~~ 140 (323)
.++.|++.+. ++..++++.+..+++.+..... ++.. .+. ..-.++..+ +.+ ...+++.
T Consensus 78 ~~e~L~~~~~------~~~we~rhg~~i~lrei~~~h~~~~~~~~-led--~~~rll~v~~Ldrf~dfisd~vvapVre~ 148 (1549)
T KOG0392|consen 78 FLEELVNDLF------EPQWEIRHGAAIALREILKTHGDSLSYEL-LED--LLIRLLCVLALDRFGDFISDNVVAPVREA 148 (1549)
T ss_pred HHHHHHHHhc------CchhhhhcCcchhhhhHHHHhcchhhHHH-HHH--HHHHHHHHHHHHHhcccccccchhhhHHH
Confidence 4666777666 5667777777777776543221 2211 111 112222222 111 2467888
Q ss_pred HHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHH-HHhccCCchhHHHHhhCchHHHHHHhhcC--ch
Q 020640 141 AAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAI-FNLCITHENKARAVRDGGVSVILKKIMDG--VH 217 (323)
Q Consensus 141 a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL-~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~ 217 (323)
++++|..+..+...... ...+..+.+++..+.-+++.-.+..+ ++++...+.-..+.. -+++..+..|.+. .+
T Consensus 149 caq~L~~~l~~~~~s~~---~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~-~vl~~~i~~L~ds~ddv 224 (1549)
T KOG0392|consen 149 CAQALGAYLKHMDESLI---KETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLN-LVLDFVIEGLEDSDDDV 224 (1549)
T ss_pred HHHHHHHHHHhhhhHhh---HHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhcchHH
Confidence 88888887654321111 12456666666665433333322222 222211111111111 2445555556554 56
Q ss_pred HHHHHHHHHHHhcCH--HHHHHHHhcCCHHHHHHHHhccCC-hhHHHHHHHHHHHhcccChH--hHHHHHhhcccHHHHH
Q 020640 218 VDELLAILAMLSTNH--RAVEEIGDLGGVSCMLRIIRESTC-DRNKENCIAILHTICLSDRT--KWKAMREEESTHGTIS 292 (323)
Q Consensus 218 ~~~a~~~L~~l~~~~--~~~~~i~~~g~i~~Lv~ll~~~~~-~~~~~~a~~~L~~L~~~~~~--~~~~~~~~~~~i~~L~ 292 (323)
+..|+..+.-.+..- .....+. .++..+..++-..++ ..-...-...+..++...+. .....-.+.|.++.+.
T Consensus 225 ~~~aa~~l~~~~s~~v~l~~~~i~--~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~ 302 (1549)
T KOG0392|consen 225 RSVAAQFLVPAPSIQVKLMVQKIA--KLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLW 302 (1549)
T ss_pred HHHHHHHhhhhhHHHHhhhHhHHH--HHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhH
Confidence 777777776665532 1111121 234444444433221 11122233344444444421 1111112357888888
Q ss_pred HHhhcCCHHHHHHHHHHHHHHhcc
Q 020640 293 KLAQDGTARAKRKATGILERLKRT 316 (323)
Q Consensus 293 ~ll~~~~~~~~~~A~~~L~~l~~~ 316 (323)
-++++.-..++..+...+..|...
T Consensus 303 p~l~~~i~sv~~a~l~~l~~lle~ 326 (1549)
T KOG0392|consen 303 PFLRHTISSVRRAALETLAMLLEA 326 (1549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888888888888888877777653
No 364
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=20.95 E-value=7.3e+02 Score=23.62 Aligned_cols=51 Identities=22% Similarity=0.348 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhh-cCHhHHHHHHHHHHHh
Q 020640 134 TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE-GHQSAMKDVASAIFNL 189 (323)
Q Consensus 134 ~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~al~aL~~L 189 (323)
+..+....+.++..+..-++-- .-+|.+|++-++. ++..++..++.+|..|
T Consensus 289 ~~~V~Aa~A~A~v~l~~lP~KL-----nPiIrpLMdSIK~Een~~LQ~rsA~slA~L 340 (441)
T PF12054_consen 289 DVRVLAAAASALVALGGLPKKL-----NPIIRPLMDSIKREENELLQQRSAESLARL 340 (441)
T ss_pred HHHHHHHHHHHHHHhccCCCCc-----cHHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence 5667777788887775444211 2267788887776 4788899999888776
No 365
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=20.51 E-value=4.9e+02 Score=21.47 Aligned_cols=69 Identities=7% Similarity=-0.036 Sum_probs=47.6
Q ss_pred CHHHHHHHHhccCChhHHHHHHHHHHHhccc-ChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 020640 243 GVSCMLRIIRESTCDRNKENCIAILHTICLS-DRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK 314 (323)
Q Consensus 243 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~-~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~ 314 (323)
.++.+++=+++.. ...+.-|...+..|... ..++.-.++ ...+.+|-.-+.+.++++...+..+|+.|.
T Consensus 39 ~Lpif~dGL~Et~-~Py~flA~~g~~dll~~~~~~kilPvl--PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv 108 (183)
T PF10274_consen 39 YLPIFFDGLRETE-HPYRFLARQGIKDLLERGGGEKILPVL--PQLIIPLKRALNTRDPEVFCATLKALQQLV 108 (183)
T ss_pred HHHHHHhhhhccC-ccHHHHHHHHHHHHHHhcchhHHHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 3566666666544 55556666666666555 444444554 467788888888889999999999999984
No 366
>PF14961 BROMI: Broad-minded protein
Probab=20.46 E-value=1.1e+03 Score=25.68 Aligned_cols=197 Identities=12% Similarity=0.069 Sum_probs=115.3
Q ss_pred HHHHHHHHHhccccch-hhhhhccCCcHHHHHHH----HhcC------CHHHHHHHHHHHHHhcCCCCchhhhhc-----
Q 020640 97 EDVITTLLNLSIHDNN-KKLVAETPMVIPLLMDA----LRSG------TIETRSNAAAALFTLSALDSNKEVIGK----- 160 (323)
Q Consensus 97 ~~a~~~L~~ls~~~~~-~~~i~~~~g~i~~Lv~l----l~~~------~~~~~~~a~~~L~~L~~~~~~~~~i~~----- 160 (323)
.....+|+.++...+. .+.+.++ .++..|+.- ++.. .+......+.+|..++..+.....+..
T Consensus 484 slV~eiL~~lc~~~~ca~eCL~~~-~Vi~~LL~Pi~~~l~~~~~~~~~~e~tli~iAdiLariAs~~~Gl~lLLyg~n~~ 562 (1296)
T PF14961_consen 484 SLVMEILRMLCDQKECAVECLYKD-TVIEVLLQPIHSLLKGTEASKNCSETTLIHIADILARIASTEEGLALLLYGENMS 562 (1296)
T ss_pred HHHHHHHHHHhcCHHHHHHHhcCC-hHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHhhccchhhhhcccccC
Confidence 3346778888877774 4555554 367766543 3322 366677889999999876665444422
Q ss_pred ------cCChHHHHH----Hhhhc------C---HhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhc------C
Q 020640 161 ------SGALKPLID----LLDEG------H---QSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMD------G 215 (323)
Q Consensus 161 ------~g~i~~Lv~----lL~~~------~---~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~------~ 215 (323)
..+...+++ +|.++ + +.++..-+-.-+.+-...++-..+..-|.-..+.+..+. .
T Consensus 563 s~~~~~~~~ahiIaqFtkklL~~~~~~~~~s~~~~~v~gafifvcRQ~Y~TCeGL~~L~pY~LH~~ia~Awkk~s~lse~ 642 (1296)
T PF14961_consen 563 SSEEESSTAAHIIAQFTKKLLDEDISTLSGSEMLPVVKGAFIFVCRQMYSTCEGLQVLIPYGLHESIANAWKKTSLLSER 642 (1296)
T ss_pred ccccCCCchhhHHHHHHHHHcCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhHHHhhhcchHHHHHHHHHHhhhhhcc
Confidence 223333333 44432 1 223333333444444445555555555665666554331 0
Q ss_pred ---------c-------h------HHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHH------HHHHH
Q 020640 216 ---------V-------H------VDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKEN------CIAIL 267 (323)
Q Consensus 216 ---------~-------~------~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~------a~~~L 267 (323)
. . .+.-+..|.|.|..|.+...+-+.|++..-+..|...-..+.|.. --..+
T Consensus 643 ~~tpv~~s~s~ss~~~~~~n~~~Wee~LlD~llnfa~TPkG~~lL~~tg~i~~Cv~~m~~~~~kklQvS~~ekfgyGv~v 722 (1296)
T PF14961_consen 643 IPTPVPGSDSVSSVSQESQNIMLWEETLLDNLLNFAATPKGLLLLQQTGAINECVSFMFNRYTKKLQVSRCEKFGYGVMV 722 (1296)
T ss_pred CCCCCCCCCccccccccchhHHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHHHHhhccccccccccCccEEE
Confidence 0 0 245677889999999999999999998888877764111111111 23345
Q ss_pred HHhcccChHhHHHHHhhcccHHHHHHHhh
Q 020640 268 HTICLSDRTKWKAMREEESTHGTISKLAQ 296 (323)
Q Consensus 268 ~~L~~~~~~~~~~~~~~~~~i~~L~~ll~ 296 (323)
.+++...++. ..+...|++..|+.=+.
T Consensus 723 tqvasT~~G~--~AL~~sGfi~~Lv~dlW 749 (1296)
T PF14961_consen 723 TQVASTAAGA--QALQKSGFIKALVTDLW 749 (1296)
T ss_pred EEeecCchHH--HHHHhccHHHHHHHHHH
Confidence 5666666652 45557899999987643
No 367
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=20.39 E-value=6.6e+02 Score=22.92 Aligned_cols=96 Identities=16% Similarity=0.064 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhc---cCC------hhHHHHHHHHHHHhcccChHhHHHHHhhcccH
Q 020640 218 VDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRE---STC------DRNKENCIAILHTICLSDRTKWKAMREEESTH 288 (323)
Q Consensus 218 ~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~---~~~------~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i 288 (323)
....+.++..|..++...-...=+-.++.++..+-. +.. -.+++.|+.+|..+|..-......+ ...++
T Consensus 234 L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l--~~ri~ 311 (343)
T cd08050 234 LIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTL--QPRIT 311 (343)
T ss_pred HHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcH--HHHHH
Confidence 344566666777776554444333467777766632 111 2579999999999998654433333 34566
Q ss_pred HHHHHHhhcC-CHHH-HHHHHHHHHHHhc
Q 020640 289 GTISKLAQDG-TARA-KRKATGILERLKR 315 (323)
Q Consensus 289 ~~L~~ll~~~-~~~~-~~~A~~~L~~l~~ 315 (323)
..|.+.+.+. .+.. ..-|...|..|..
T Consensus 312 ~tl~k~l~d~~~~~~~~YGAi~GL~~lG~ 340 (343)
T cd08050 312 RTLLKALLDPKKPLTTHYGAIVGLSALGP 340 (343)
T ss_pred HHHHHHHcCCCCCcchhhHHHHHHHHhCc
Confidence 6777766654 3333 6777777777653
No 368
>KOG2312 consensus Predicted transcriptional regulator, contains ARID domain [Transcription]
Probab=20.14 E-value=14 Score=36.52 Aligned_cols=150 Identities=9% Similarity=-0.018 Sum_probs=88.4
Q ss_pred HHHHHhcCCCCchhhhhc-cCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHH
Q 020640 143 AALFTLSALDSNKEVIGK-SGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVD 219 (323)
Q Consensus 143 ~~L~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~ 219 (323)
.++++|+.+.+|+..+.. .-....|+..-.-.-..+...|+.++.||+.-.. .++-....+..+-+-+.+. .+..
T Consensus 15 tv~r~LSf~~~n~~~~~~~~p~~~~lVm~a~~~ws~~~Vqal~s~~nlaqpt~--~e~S~~~~L~t~t~Gi~S~drflim 92 (847)
T KOG2312|consen 15 TVSRMLSFKRQNQQQHSPAPPPQQVLVMVAQPQWSQMQVQALQSNANLAQPTS--GESSLIKQLLTPTRGISSPDRFLIM 92 (847)
T ss_pred eeeeeeccchhhhcccCCCCChhheeeeecccccchhhhHhhhhhcccCCcch--hhhhHHHHHhhhccCCCCCCceeEe
Confidence 456778888888888776 3333444433333344577889999999987221 1111111111122222222 5678
Q ss_pred HHHHHHHHHhcCHHHHHHH---HhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHh
Q 020640 220 ELLAILAMLSTNHRAVEEI---GDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLA 295 (323)
Q Consensus 220 ~a~~~L~~l~~~~~~~~~i---~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll 295 (323)
.++.+|.++|..+.+-..| +..+....++..+.-.+ -.+......+|+.|+.-..-.+..+-.-.+.++.|+.+.
T Consensus 93 r~lEIl~~lcgrEgN~qvIc~~l~~d~y~~iv~~ltl~D-vllvi~Tle~LyalsemGdvac~~Is~v~klidqLVsl~ 170 (847)
T KOG2312|consen 93 RALEILPPLCGREGNPQVICQVLSNDAYGFIVQGLTLAD-VLLVIQTLEQLYALSEMGDVACVPISNVQKLIDQLVSLS 170 (847)
T ss_pred eccccCcccccCCCCceeehhhhchHHHHHHHhccchhH-eehhhhhhhHHhcccccCCccchhhhhhhhhhhhhhccc
Confidence 8999999999976554444 44456677777766433 445666777777777655443445544456777777663
Done!