Query 020640
Match_columns 323
No_of_seqs 156 out of 1410
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 06:01:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020640.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020640hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmw_A APC variant protein; AR 100.0 5.8E-35 2E-39 265.5 23.4 273 44-320 46-339 (354)
2 3nmz_A APC variant protein; pr 100.0 7.2E-34 2.5E-38 265.7 21.3 268 48-319 166-454 (458)
3 1xm9_A Plakophilin 1; armadill 100.0 3.9E-33 1.3E-37 263.0 24.9 278 32-318 3-363 (457)
4 3l6x_A Catenin delta-1; cateni 100.0 2.4E-32 8.3E-37 261.0 25.4 282 28-318 45-387 (584)
5 3now_A UNC-45 protein, SD10334 100.0 6.9E-31 2.4E-35 258.8 28.2 280 28-316 418-738 (810)
6 1xm9_A Plakophilin 1; armadill 100.0 6E-31 2.1E-35 248.0 26.5 285 28-322 41-456 (457)
7 3ul1_B Importin subunit alpha- 100.0 2.4E-30 8.4E-35 247.2 27.5 279 28-316 97-388 (510)
8 3nmz_A APC variant protein; pr 100.0 7.4E-31 2.5E-35 245.3 22.6 284 28-315 67-408 (458)
9 3tpo_A Importin subunit alpha- 100.0 1E-29 3.5E-34 244.0 28.6 279 28-316 116-407 (529)
10 3nmw_A APC variant protein; AR 100.0 1.2E-30 4.3E-35 236.9 18.8 244 28-279 70-341 (354)
11 3tpo_A Importin subunit alpha- 100.0 3.5E-29 1.2E-33 240.3 29.2 287 28-317 159-451 (529)
12 3l6x_A Catenin delta-1; cateni 100.0 8.9E-30 3.1E-34 243.3 24.6 283 28-320 87-481 (584)
13 3ul1_B Importin subunit alpha- 100.0 3.1E-29 1.1E-33 239.6 26.8 287 28-317 140-432 (510)
14 3now_A UNC-45 protein, SD10334 100.0 1.8E-29 6.1E-34 248.8 24.0 284 28-321 492-788 (810)
15 4b8j_A Importin subunit alpha- 100.0 1.2E-27 4.2E-32 229.3 30.5 280 28-316 114-401 (528)
16 4hxt_A De novo protein OR329; 100.0 1E-27 3.4E-32 207.2 24.3 240 73-321 2-247 (252)
17 4hxt_A De novo protein OR329; 100.0 2.1E-27 7.2E-32 205.2 23.4 237 31-276 2-245 (252)
18 4b8j_A Importin subunit alpha- 100.0 2.1E-26 7.1E-31 220.7 31.9 280 29-317 158-445 (528)
19 1wa5_B Importin alpha subunit; 100.0 1.3E-26 4.4E-31 222.3 30.0 279 28-316 127-413 (530)
20 2jdq_A Importin alpha-1 subuni 100.0 5.3E-26 1.8E-30 212.8 31.5 280 29-318 105-393 (450)
21 4db8_A Armadillo-repeat protei 100.0 3.9E-27 1.4E-31 204.1 20.9 233 31-272 12-251 (252)
22 1wa5_B Importin alpha subunit; 100.0 5.2E-26 1.8E-30 218.1 30.4 279 30-318 172-460 (530)
23 2jdq_A Importin alpha-1 subuni 100.0 1.2E-25 4E-30 210.5 31.7 275 31-316 64-348 (450)
24 4db8_A Armadillo-repeat protei 100.0 5.2E-27 1.8E-31 203.4 20.5 236 72-316 11-252 (252)
25 1jdh_A Beta-catenin; beta-cate 100.0 8.4E-27 2.9E-31 222.8 22.5 279 27-317 13-297 (529)
26 2z6h_A Catenin beta-1, beta-ca 99.9 2.3E-26 8E-31 225.6 23.4 279 27-317 10-294 (644)
27 1jdh_A Beta-catenin; beta-cate 99.9 1.4E-25 4.8E-30 214.3 26.5 280 28-317 98-387 (529)
28 2z6h_A Catenin beta-1, beta-ca 99.9 3.9E-25 1.3E-29 216.9 26.2 280 28-317 95-384 (644)
29 2z6g_A B-catenin; FULL-length, 99.9 9.5E-25 3.2E-29 218.2 23.5 276 30-317 149-430 (780)
30 3tt9_A Plakophilin-2; cell adh 99.9 2.1E-25 7.2E-30 189.9 14.3 193 73-273 8-230 (233)
31 3opb_A SWI5-dependent HO expre 99.9 2.4E-24 8.3E-29 209.0 21.5 285 28-321 373-734 (778)
32 2z6g_A B-catenin; FULL-length, 99.9 6.2E-24 2.1E-28 212.3 25.2 279 29-317 232-520 (780)
33 4db6_A Armadillo repeat protei 99.9 9.2E-24 3.1E-28 177.9 21.0 195 120-316 11-210 (210)
34 3tt9_A Plakophilin-2; cell adh 99.9 1.6E-24 5.5E-29 184.5 15.4 192 31-231 8-230 (233)
35 4db6_A Armadillo repeat protei 99.9 2.8E-23 9.4E-28 175.0 19.8 193 72-272 11-209 (210)
36 3opb_A SWI5-dependent HO expre 99.9 3.1E-22 1.1E-26 194.3 23.3 280 31-318 334-687 (778)
37 1xqr_A HSPBP1 protein; armadil 99.9 4.3E-21 1.5E-25 169.9 22.7 222 93-316 54-288 (296)
38 1xqr_A HSPBP1 protein; armadil 99.9 8.1E-20 2.8E-24 161.7 23.2 237 27-272 24-287 (296)
39 3grl_A General vesicular trans 99.8 1.9E-16 6.4E-21 150.4 23.9 280 27-315 17-342 (651)
40 3grl_A General vesicular trans 99.6 3E-13 1E-17 128.5 25.6 280 29-314 58-393 (651)
41 3ltm_A Alpha-REP4; protein eng 99.4 2.6E-11 8.9E-16 101.5 19.6 191 72-322 18-210 (211)
42 1oyz_A Hypothetical protein YI 99.4 3.5E-11 1.2E-15 105.3 19.0 226 28-314 20-249 (280)
43 3ltm_A Alpha-REP4; protein eng 99.3 2E-10 6.9E-15 96.0 19.5 187 30-276 18-207 (211)
44 3ltj_A Alpharep-4; protein eng 99.3 2E-10 6.8E-15 95.3 19.3 184 72-315 13-198 (201)
45 3ltj_A Alpharep-4; protein eng 99.3 2.9E-10 9.8E-15 94.3 19.6 185 28-272 11-198 (201)
46 4fdd_A Transportin-1; heat rep 99.3 2.5E-11 8.7E-16 122.4 15.2 271 31-317 174-473 (852)
47 4fdd_A Transportin-1; heat rep 99.3 8.4E-11 2.9E-15 118.6 18.5 271 31-317 128-431 (852)
48 1oyz_A Hypothetical protein YI 99.3 9.6E-10 3.3E-14 96.0 21.3 200 68-315 19-221 (280)
49 4gmo_A Putative uncharacterize 99.2 2.3E-10 7.9E-15 112.6 13.7 191 73-271 34-257 (684)
50 4gmo_A Putative uncharacterize 99.1 5.2E-10 1.8E-14 110.1 14.8 191 122-315 36-258 (684)
51 1ibr_B P95, importin beta-1 su 99.1 1.6E-09 5.6E-14 100.8 16.1 272 30-316 127-438 (462)
52 2vgl_B AP-2 complex subunit be 99.1 4.5E-09 1.5E-13 101.8 18.8 263 31-315 121-419 (591)
53 1b3u_A Protein (protein phosph 99.1 1.4E-08 4.7E-13 97.4 21.1 263 31-314 87-352 (588)
54 1b3u_A Protein (protein phosph 99.1 4.5E-09 1.6E-13 100.8 17.7 261 31-315 324-587 (588)
55 2vgl_B AP-2 complex subunit be 99.0 1.5E-08 5.2E-13 98.1 17.6 255 32-316 50-312 (591)
56 1w63_A Adapter-related protein 98.9 1.7E-07 5.9E-12 91.1 20.2 143 31-193 107-265 (618)
57 2bpt_A Importin beta-1 subunit 98.8 8.4E-08 2.9E-12 96.3 17.3 265 35-316 373-669 (861)
58 1w63_A Adapter-related protein 98.8 1.2E-06 4E-11 85.2 24.5 249 31-315 142-414 (618)
59 1qgr_A Protein (importin beta 98.8 8.3E-07 2.8E-11 89.2 22.0 272 31-316 128-438 (876)
60 1qgr_A Protein (importin beta 98.8 1.4E-07 4.8E-12 94.8 16.1 269 33-316 368-680 (876)
61 1u6g_C TIP120 protein, CAND1; 98.7 4.4E-08 1.5E-12 102.6 11.1 269 31-316 6-285 (1230)
62 2bpt_A Importin beta-1 subunit 98.7 4.3E-07 1.5E-11 91.1 16.6 268 31-316 411-712 (861)
63 1ibr_B P95, importin beta-1 su 98.6 3.2E-07 1.1E-11 85.1 12.7 258 40-316 11-289 (462)
64 1ho8_A Vacuolar ATP synthase s 98.5 1.4E-05 4.9E-10 73.6 19.5 223 93-316 182-477 (480)
65 3b2a_A TON_1937, putative unch 98.5 5.1E-06 1.7E-10 69.0 14.6 185 29-232 31-220 (265)
66 1u6g_C TIP120 protein, CAND1; 98.4 2.2E-06 7.5E-11 89.7 14.3 226 30-276 47-288 (1230)
67 2vgl_A Adaptor protein complex 98.4 3.5E-05 1.2E-09 74.9 21.5 104 32-152 112-218 (621)
68 2qk2_A LP04448P; mini spindles 98.4 5E-06 1.7E-10 70.7 13.0 183 125-317 19-207 (242)
69 2qk2_A LP04448P; mini spindles 98.3 4.1E-06 1.4E-10 71.3 11.2 179 35-230 19-205 (242)
70 3b2a_A TON_1937, putative unch 98.3 1.4E-05 4.7E-10 66.4 13.5 220 73-313 33-259 (265)
71 2db0_A 253AA long hypothetical 98.3 0.00031 1E-08 56.2 19.8 215 28-274 29-248 (253)
72 2vgl_A Adaptor protein complex 98.3 0.00011 3.9E-09 71.2 21.1 252 31-315 146-433 (621)
73 3dad_A FH1/FH2 domain-containi 98.2 9E-05 3.1E-09 65.1 16.3 154 164-318 120-289 (339)
74 1te4_A Conserved protein MTH18 98.1 4.7E-07 1.6E-11 69.6 1.3 118 31-188 12-130 (131)
75 2qk1_A Protein STU2; STU2P, XM 98.0 8.2E-05 2.8E-09 63.6 13.3 190 126-318 21-223 (249)
76 4ady_A RPN2, 26S proteasome re 98.0 0.00099 3.4E-08 66.6 22.5 233 32-315 430-676 (963)
77 2qk1_A Protein STU2; STU2P, XM 98.0 3E-05 1E-09 66.4 10.4 187 36-230 21-220 (249)
78 1te4_A Conserved protein MTH18 98.0 1.3E-06 4.6E-11 67.0 1.4 118 72-227 11-130 (131)
79 3dad_A FH1/FH2 domain-containi 98.0 0.00033 1.1E-08 61.6 15.8 152 31-189 118-284 (339)
80 3tjz_B Coatomer subunit gamma; 97.9 0.00027 9.4E-09 63.3 15.3 208 75-315 106-316 (355)
81 2iw3_A Elongation factor 3A; a 97.8 0.0052 1.8E-07 62.0 23.6 261 31-316 54-325 (986)
82 3tjz_B Coatomer subunit gamma; 97.8 0.00014 4.9E-09 65.2 10.6 239 31-310 104-348 (355)
83 2db0_A 253AA long hypothetical 97.7 0.012 4.3E-07 47.0 18.7 214 72-316 31-247 (253)
84 1ho8_A Vacuolar ATP synthase s 97.6 0.028 9.6E-07 51.9 23.6 232 72-313 76-348 (480)
85 4ady_A RPN2, 26S proteasome re 97.6 0.0099 3.4E-07 59.6 21.4 236 31-311 472-715 (963)
86 2iw3_A Elongation factor 3A; a 97.2 0.037 1.3E-06 55.9 20.3 222 31-270 95-322 (986)
87 1wa5_C Importin alpha RE-expor 97.1 0.013 4.5E-07 59.6 16.5 259 46-316 377-671 (960)
88 2fv2_A RCD1 required for cell 96.6 0.098 3.4E-06 44.0 14.7 143 175-317 14-176 (268)
89 2x1g_F Cadmus; transport prote 96.3 0.88 3E-05 46.1 22.9 207 95-315 437-663 (971)
90 3ebb_A Phospholipase A2-activa 96.2 0.14 4.8E-06 44.7 14.6 137 175-312 161-303 (304)
91 4ffb_C Protein STU2; tubulin f 96.1 0.11 3.7E-06 44.6 13.4 183 36-230 14-212 (278)
92 2fv2_A RCD1 required for cell 96.0 0.18 6.3E-06 42.4 13.3 138 180-319 74-228 (268)
93 1wa5_C Importin alpha RE-expor 95.9 1.1 3.7E-05 45.5 21.6 214 94-316 376-629 (960)
94 2of3_A ZYG-9; multifunctional 95.7 0.1 3.5E-06 44.6 11.0 180 41-238 57-246 (266)
95 1upk_A MO25 protein; transfera 95.7 0.97 3.3E-05 39.7 18.1 194 121-316 78-284 (341)
96 1upk_A MO25 protein; transfera 95.5 0.63 2.2E-05 40.8 15.2 214 31-252 78-307 (341)
97 2x19_B Importin-13; nuclear tr 95.4 0.47 1.6E-05 48.0 16.6 174 132-314 460-645 (963)
98 3c2g_A SYS-1 protein; beta-cat 95.0 0.65 2.2E-05 41.0 13.6 130 97-228 261-401 (619)
99 3eg5_B Protein diaphanous homo 94.8 0.98 3.4E-05 40.7 15.3 162 50-214 87-275 (383)
100 3ebb_A Phospholipase A2-activa 94.8 0.39 1.3E-05 41.9 12.1 165 45-213 117-286 (304)
101 2x1g_F Cadmus; transport prote 94.6 1.4 4.7E-05 44.7 17.3 211 91-315 476-722 (971)
102 3oc3_A Helicase MOT1, MOT1; re 94.5 0.22 7.7E-06 46.9 10.0 247 32-311 175-432 (800)
103 4ffb_C Protein STU2; tubulin f 94.5 1.3 4.3E-05 37.7 14.6 184 126-317 14-214 (278)
104 3u0r_A Apoptosis inhibitor 5; 94.3 0.44 1.5E-05 43.9 11.6 131 31-187 29-159 (507)
105 3oc3_A Helicase MOT1, MOT1; re 94.0 0.27 9.1E-06 46.4 9.5 203 90-314 185-403 (800)
106 3eg5_B Protein diaphanous homo 93.8 0.8 2.7E-05 41.3 12.4 146 112-260 102-282 (383)
107 2f31_A Diaphanous protein homo 93.6 0.66 2.2E-05 38.7 10.8 127 135-262 68-218 (233)
108 2x19_B Importin-13; nuclear tr 93.4 4.9 0.00017 40.5 18.8 214 43-272 462-714 (963)
109 2f31_A Diaphanous protein homo 93.4 3 0.0001 34.6 14.7 141 51-193 22-182 (233)
110 3m1i_C Exportin-1; heat repeat 92.6 1.6 5.4E-05 44.8 13.9 217 31-273 16-264 (1049)
111 2of3_A ZYG-9; multifunctional 91.8 1.7 5.7E-05 37.0 10.7 175 90-281 57-245 (266)
112 4hat_C Exportin-1; heat repeat 91.7 7.4 0.00025 39.8 17.3 218 28-272 13-263 (1023)
113 2bnx_A Diaphanous protein homo 91.4 7.7 0.00026 34.8 15.4 161 51-214 26-213 (386)
114 3c2g_A SYS-1 protein; beta-cat 90.9 8.3 0.00028 34.2 16.4 114 50-173 263-378 (619)
115 2bnx_A Diaphanous protein homo 90.6 2.7 9.3E-05 37.8 11.6 128 176-303 72-220 (386)
116 4hat_C Exportin-1; heat repeat 90.0 3.3 0.00011 42.4 12.9 143 43-194 466-621 (1023)
117 1lsh_A Lipovitellin (LV-1N, LV 89.8 14 0.00047 37.9 17.4 173 74-276 392-580 (1056)
118 1lrv_A LRV, leucine-rich repea 88.6 0.37 1.3E-05 40.6 4.0 85 58-184 60-144 (244)
119 3ibv_A Exportin-T; karyopherin 88.1 16 0.00053 37.2 16.2 212 92-315 456-730 (980)
120 3gjx_A Exportin-1; transport, 87.8 15 0.0005 37.8 15.8 218 28-274 25-277 (1073)
121 3u0r_A Apoptosis inhibitor 5; 86.8 10 0.00035 35.0 12.5 117 174-310 40-158 (507)
122 3l9t_A Putative uncharacterize 85.9 6.3 0.00022 32.7 9.8 131 90-240 82-218 (240)
123 3m1i_C Exportin-1; heat repeat 85.5 9.7 0.00033 38.9 13.3 186 123-317 346-571 (1049)
124 3ibv_A Exportin-T; karyopherin 84.3 38 0.0013 34.4 17.7 269 32-314 41-360 (980)
125 3l9t_A Putative uncharacterize 82.6 9.9 0.00034 31.5 9.6 144 122-284 72-219 (240)
126 3ldz_A STAM-1, signal transduc 82.3 5.2 0.00018 30.3 7.4 72 243-315 43-114 (140)
127 3a6p_A Exportin-5; exportin-5, 81.7 53 0.0018 34.1 18.5 202 43-274 26-278 (1204)
128 1x5b_A Signal transducing adap 79.7 6.9 0.00024 30.5 7.4 72 243-315 53-125 (163)
129 3a6p_A Exportin-5; exportin-5, 77.7 70 0.0024 33.2 19.2 256 43-314 60-379 (1204)
130 1juq_A ADP-ribosylation factor 77.5 9.1 0.00031 30.0 7.6 72 243-315 51-128 (171)
131 1lrv_A LRV, leucine-rich repea 76.8 1.4 4.7E-05 37.1 2.7 102 42-185 62-169 (244)
132 3g2s_A C-terminal fragment of 76.0 11 0.00039 28.7 7.5 72 243-315 49-126 (149)
133 1x5b_A Signal transducing adap 75.7 7.7 0.00026 30.2 6.6 72 30-107 51-124 (163)
134 1mhq_A ADP-ribosylation factor 74.6 11 0.00037 28.8 7.1 72 243-315 39-116 (148)
135 1mhq_A ADP-ribosylation factor 74.2 12 0.00041 28.5 7.3 78 30-108 37-116 (148)
136 1lsh_A Lipovitellin (LV-1N, LV 71.6 94 0.0032 31.8 17.5 64 163-230 392-469 (1056)
137 3zyq_A Hepatocyte growth facto 71.4 11 0.00036 31.1 6.8 72 243-315 46-118 (226)
138 1dvp_A HRS, hepatocyte growth 70.8 14 0.00049 30.1 7.5 72 243-315 43-115 (220)
139 1juq_A ADP-ribosylation factor 70.4 12 0.0004 29.4 6.6 78 30-108 49-128 (171)
140 3pst_A Protein DOA1; protein d 65.1 24 0.00082 32.0 8.2 102 90-194 273-392 (425)
141 3gae_A Protein DOA1; UFD3, CDC 65.0 10 0.00035 31.8 5.5 101 90-194 101-220 (253)
142 3ldz_A STAM-1, signal transduc 65.0 13 0.00046 27.9 5.7 71 30-107 41-113 (140)
143 3qml_C Protein SLS1, nucleotid 62.4 76 0.0026 27.3 14.1 145 164-315 24-189 (315)
144 3qml_C Protein SLS1, nucleotid 62.1 77 0.0026 27.3 13.4 135 44-189 42-187 (315)
145 3gs3_A Symplekin, LD45768P; he 62.0 45 0.0015 27.9 9.0 105 32-148 54-171 (257)
146 3gs3_A Symplekin, LD45768P; he 60.4 36 0.0012 28.5 8.0 88 94-189 30-117 (257)
147 1elk_A Target of MYB1; superhe 60.2 31 0.0011 26.4 7.1 73 243-315 54-130 (157)
148 3gae_A Protein DOA1; UFD3, CDC 60.0 40 0.0014 28.1 8.3 101 173-276 101-221 (253)
149 3zyq_A Hepatocyte growth facto 59.5 15 0.00053 30.1 5.6 73 30-108 44-118 (226)
150 3gjx_A Exportin-1; transport, 58.7 1.7E+02 0.0057 30.1 17.8 215 75-315 30-275 (1073)
151 2bay_A PRE-mRNA splicing facto 58.0 5.3 0.00018 25.4 1.9 26 2-28 31-56 (61)
152 3l3f_X Protein DOA1, DOA1/UFD3 57.0 31 0.0011 30.6 7.3 101 90-193 210-328 (362)
153 1dvp_A HRS, hepatocyte growth 54.9 21 0.0007 29.1 5.6 71 31-107 42-114 (220)
154 1elk_A Target of MYB1; superhe 51.6 43 0.0015 25.6 6.6 75 30-108 52-130 (157)
155 4dvg_B Diaphanous protein; cyt 49.9 96 0.0033 24.7 13.3 153 165-321 69-256 (353)
156 1vdy_A Hypothetical protein (R 49.4 37 0.0013 25.6 5.7 73 244-317 51-132 (140)
157 3o2t_A Symplekin; heat repeat, 47.6 69 0.0024 28.6 8.1 104 31-148 63-181 (386)
158 1vdy_A Hypothetical protein (R 47.1 46 0.0016 25.0 5.9 75 30-108 48-130 (140)
159 1t1h_A Gspef-atpub14, armadill 46.9 13 0.00046 24.3 2.7 37 2-40 35-71 (78)
160 3g2s_A C-terminal fragment of 43.4 58 0.002 24.7 6.1 71 122-192 49-127 (149)
161 3vld_A DNA mismatch repair pro 41.2 1.5E+02 0.0052 27.2 9.4 156 31-201 31-195 (500)
162 2kr4_A Ubiquitin conjugation f 37.6 36 0.0012 22.9 3.7 36 2-40 41-76 (85)
163 2kre_A Ubiquitin conjugation f 36.1 30 0.001 24.2 3.2 36 2-40 56-91 (100)
164 1rij_A E6APN1 peptide; Trp-CAG 35.4 12 0.0004 18.5 0.6 15 2-16 6-20 (26)
165 3o2t_A Symplekin; heat repeat, 34.0 2.5E+02 0.0086 24.9 11.2 128 44-189 39-181 (386)
166 1wgm_A Ubiquitin conjugation f 32.0 35 0.0012 23.7 3.0 36 2-40 50-85 (98)
167 3rru_A TOM1L1 protein; structu 30.0 78 0.0027 24.0 4.9 73 243-315 54-130 (152)
168 3l3f_X Protein DOA1, DOA1/UFD3 26.1 1.4E+02 0.0047 26.3 6.4 127 179-315 180-326 (362)
169 3s4w_B Protein FACD2, fanconi 25.8 6E+02 0.021 26.7 20.6 256 32-315 158-467 (1323)
170 3vld_A DNA mismatch repair pro 24.6 4.2E+02 0.014 24.4 13.7 162 93-270 50-223 (500)
171 2yu4_A E3 SUMO-protein ligase 21.9 1E+02 0.0034 21.0 3.8 37 2-40 35-79 (94)
172 3s4w_B Protein FACD2, fanconi 21.2 7.4E+02 0.025 26.0 19.0 263 30-314 191-506 (1323)
173 1vsy_5 Proteasome activator BL 20.6 4.6E+02 0.016 26.6 9.7 180 75-271 135-364 (997)
174 2xpp_A IWS1, ECU08_0440; trans 20.3 2.8E+02 0.0095 20.8 10.9 96 47-148 37-134 (145)
No 1
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=5.8e-35 Score=265.46 Aligned_cols=273 Identities=17% Similarity=0.165 Sum_probs=236.1
Q ss_pred chhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhccc-----ccCCCCCHHHHHHHHHHHHHhccccc-hhhhhh
Q 020640 44 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSES-----KCENGINPNLQEDVITTLLNLSIHDN-NKKLVA 117 (323)
Q Consensus 44 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~-----~~~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~ 117 (323)
.+.+..|+++|.|++. ++++|..+.+ .|+++.|+.+|... ...++.++.++..|+++|.||+..++ ++..+.
T Consensus 46 ~~~~~~A~~aL~nls~-d~e~R~~i~~-~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~ 123 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSF-DEEHRHAMNE-LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123 (354)
T ss_dssp GGTHHHHHHHHHHHHT-SHHHHHHHHH-TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcC-CHHHHHHHHH-cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3456789999999996 5889999999 99999999999521 00002357899999999999998876 777776
Q ss_pred ccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--CCchhhhhccCChHHHHHHh-hhcCHhHHHHHHHHHHHhcc-CC
Q 020640 118 ETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL--DSNKEVIGKSGALKPLIDLL-DEGHQSAMKDVASAIFNLCI-TH 193 (323)
Q Consensus 118 ~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~al~aL~~L~~-~~ 193 (323)
..+|++|.|+.+|+++++++++.++++|+||+.. ++++..+++.|+++.|+++| ++++..+++.++++|+||+. .+
T Consensus 124 ~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 6677899999999999999999999999999975 45789999999999999975 55788999999999999999 55
Q ss_pred chhHHHH-hhCchHHHHHHhhcC------chHHHHHHHHHHHhc----CHHHHHHHHhcCCHHHHHHHHhccCChhHHHH
Q 020640 194 ENKARAV-RDGGVSVILKKIMDG------VHVDELLAILAMLST----NHRAVEEIGDLGGVSCMLRIIRESTCDRNKEN 262 (323)
Q Consensus 194 ~~~~~i~-~~g~v~~Lv~ll~~~------~~~~~a~~~L~~l~~----~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 262 (323)
+++..++ ..|+++.|+++|.++ .+++.++++|+||+. +++++..+++.|+++.|+++|++++ ..+++.
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~ 282 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS-LTIVSN 282 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSC-HHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCC-hHHHHH
Confidence 7888888 679999999999865 278999999999996 7999999999999999999999765 899999
Q ss_pred HHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchhhc
Q 020640 263 CIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVNLT 320 (323)
Q Consensus 263 a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~ 320 (323)
|+++|++|+..+++.. ..+.+.|+++.|+++++++++++++.|+++|++|+...+..
T Consensus 283 A~~aL~nLa~~~~~~~-~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 283 ACGTLWNLSARNPKDQ-EALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HHHHHHHHTSSCHHHH-HHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHhCCCHHHH-HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 9999999998776644 44557999999999999999999999999999999875543
No 2
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=7.2e-34 Score=265.70 Aligned_cols=268 Identities=18% Similarity=0.174 Sum_probs=232.7
Q ss_pred HHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhccc-----ccCCCCCHHHHHHHHHHHHHhccccc-hhhhhhccCC
Q 020640 48 TEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSES-----KCENGINPNLQEDVITTLLNLSIHDN-NKKLVAETPM 121 (323)
Q Consensus 48 ~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~-----~~~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~g 121 (323)
.+|+++|.|++. ++++|..+.+ .|++++|+.+|... ...++.++.++..|+++|.||+.+++ ++..+...+|
T Consensus 166 ~qAv~aL~nls~-~~e~R~~i~~-~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~G 243 (458)
T 3nmz_A 166 CPAVCVLMKLSF-DEEHRHAMNE-LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 243 (458)
T ss_dssp HHHHHHHHHHTT-SHHHHHHHHH-TTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHH
T ss_pred HHHHHHHHHhcC-CHHHHHHHHH-CCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCC
Confidence 489999999985 6899999999 99999999999521 00002357899999999999998877 6666666667
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--CCchhhhhccCChHHHHHHh-hhcCHhHHHHHHHHHHHhcc-CCchhH
Q 020640 122 VIPLLMDALRSGTIETRSNAAAALFTLSAL--DSNKEVIGKSGALKPLIDLL-DEGHQSAMKDVASAIFNLCI-THENKA 197 (323)
Q Consensus 122 ~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~al~aL~~L~~-~~~~~~ 197 (323)
++|.|+.+|+++++++++.++++|+||+.. ++++..+++.|++++|+++| ++++..+++.++++|+||+. .++++.
T Consensus 244 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~ 323 (458)
T 3nmz_A 244 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 323 (458)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 899999999999999999999999999974 45789999999999999975 55788999999999999999 668888
Q ss_pred HHH-hhCchHHHHHHhhcC--c----hHHHHHHHHHHHhc----CHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHH
Q 020640 198 RAV-RDGGVSVILKKIMDG--V----HVDELLAILAMLST----NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAI 266 (323)
Q Consensus 198 ~i~-~~g~v~~Lv~ll~~~--~----~~~~a~~~L~~l~~----~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~ 266 (323)
.++ ..|+++.|+++|.++ . +++.|+++|+||+. +++++..+++.|+++.|+.+|++++ ..+++.|+++
T Consensus 324 ~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~-~~v~~~A~~a 402 (458)
T 3nmz_A 324 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS-LTIVSNACGT 402 (458)
T ss_dssp HHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSC-HHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCC-hHHHHHHHHH
Confidence 888 679999999999865 2 78999999999995 7899999999999999999999765 8999999999
Q ss_pred HHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchhh
Q 020640 267 LHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVNL 319 (323)
Q Consensus 267 L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~ 319 (323)
|++|+..+++.. ..+.+.|+++.|+++++++++++++.|+++|++|+.+.+.
T Consensus 403 L~nLa~~~~~~~-~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 403 LWNLSARNPKDQ-EALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454 (458)
T ss_dssp HHHHHSSCHHHH-HHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSC
T ss_pred HHHHHcCCHHHH-HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHh
Confidence 999998776654 4445789999999999999999999999999999987654
No 3
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=3.9e-33 Score=262.99 Aligned_cols=278 Identities=19% Similarity=0.193 Sum_probs=240.4
Q ss_pred HHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc-
Q 020640 32 HFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH- 109 (323)
Q Consensus 32 ~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~- 109 (323)
.+|.|+++|+ ++++.|..|+.+|.+++.+++..+..+.+ .|+||.|+++|+ ++++.++..|+.+|.||+.+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~------s~~~~~~~~A~~aL~nLa~~~ 75 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQ-LGGICKLVDLLR------SPNQNVQQAAAGALRNLVFRS 75 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHH-TTHHHHHHHHTT------SSCHHHHHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHH-cCCHHHHHHHHc------CCCHHHHHHHHHHHHHHhcCC
Confidence 6899999996 77899999999999999888878889999 999999999999 77899999999999999987
Q ss_pred cchhhhhhccCCcHHHHHHHHh-cCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhh--------hc------
Q 020640 110 DNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLD--------EG------ 174 (323)
Q Consensus 110 ~~~~~~i~~~~g~i~~Lv~ll~-~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~--------~~------ 174 (323)
++++..+++.| .++.|+.+|+ ++++++++.++++|+||+.+++++..+++ |+++.|+++|. ++
T Consensus 76 ~~~k~~i~~~G-~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e 153 (457)
T 1xm9_A 76 TTNKLETRRQN-GIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSRE 153 (457)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------
T ss_pred HHHHHHHHHcC-CHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcc
Confidence 66899999876 5999999999 88999999999999999998889999999 99999999993 22
Q ss_pred --CHhHHHHHHHHHHHhccCCchhHHHHhh-CchHHHHHHhhc--------CchHHHHHHHHHHHhcCH-----------
Q 020640 175 --HQSAMKDVASAIFNLCITHENKARAVRD-GGVSVILKKIMD--------GVHVDELLAILAMLSTNH----------- 232 (323)
Q Consensus 175 --~~~~~~~al~aL~~L~~~~~~~~~i~~~-g~v~~Lv~ll~~--------~~~~~~a~~~L~~l~~~~----------- 232 (323)
+..+...|+++|+|||.+++++..+.+. |+++.|+.+|.+ ...++.++.+|.|++...
T Consensus 154 ~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~ 233 (457)
T 1xm9_A 154 VVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQL 233 (457)
T ss_dssp CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHH
T ss_pred cccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhc
Confidence 4567779999999999997888888887 999999999985 257889999999997421
Q ss_pred ----------------------------------------HHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcc
Q 020640 233 ----------------------------------------RAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICL 272 (323)
Q Consensus 233 ----------------------------------------~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~ 272 (323)
++.+.+++.|+++.|+.+|+.++++.+++.|+++|++|+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~ 313 (457)
T 1xm9_A 234 EYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTA 313 (457)
T ss_dssp HHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred ccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhcc
Confidence 1223455667899999999877668999999999999998
Q ss_pred cChH---hH-HHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchh
Q 020640 273 SDRT---KW-KAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVN 318 (323)
Q Consensus 273 ~~~~---~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 318 (323)
.+.. .. +.++.+.|+++.|++++.++++++++.|+|+|++|+....
T Consensus 314 ~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~ 363 (457)
T 1xm9_A 314 SKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL 363 (457)
T ss_dssp CSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG
T ss_pred CcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHH
Confidence 6532 12 4456678999999999999999999999999999997653
No 4
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=2.4e-32 Score=260.99 Aligned_cols=282 Identities=18% Similarity=0.209 Sum_probs=239.9
Q ss_pred hhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640 28 ADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 106 (323)
Q Consensus 28 ~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l 106 (323)
...+.++.||++|. ++...|.+|+.+|.+++..+++++..+.+ .|+||.|+++|+ ++++.+++.|+.+|.||
T Consensus 45 ~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~-~G~Ip~LV~LL~------s~~~~vq~~Aa~AL~nL 117 (584)
T 3l6x_A 45 WRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRK-LKGIPVLVGLLD------HPKKEVHLGACGALKNI 117 (584)
T ss_dssp CCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHGGG------CSSHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHH-cCCcHHHHHHHC------CCCHHHHHHHHHHHHHH
Confidence 34578999999996 67889999999999999888999999999 999999999999 77999999999999999
Q ss_pred ccc--cchhhhhhccCCcHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhh-----------
Q 020640 107 SIH--DNNKKLVAETPMVIPLLMDALRS-GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLD----------- 172 (323)
Q Consensus 107 s~~--~~~~~~i~~~~g~i~~Lv~ll~~-~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~----------- 172 (323)
+.+ ++++..|.+.| .++.|+.+|++ .+.++++.++++|++|+.+++++..|++ ++++.|++++.
T Consensus 118 a~~~~~~nk~~I~~~G-aIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~ 195 (584)
T 3l6x_A 118 SFGRDQDNKIAIKNCD-GVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPN 195 (584)
T ss_dssp TSSSCHHHHHHHHHTT-HHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----
T ss_pred HccCCHHHHHHHHHcC-CHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhccccccccccc
Confidence 985 67999999975 69999999997 5789999999999999999999999996 57999999872
Q ss_pred -------hcCHhHHHHHHHHHHHhccCCc-hhHHHHhh-CchHHHHHHhhc------C--chHHHHHHHHHHHhcCHH--
Q 020640 173 -------EGHQSAMKDVASAIFNLCITHE-NKARAVRD-GGVSVILKKIMD------G--VHVDELLAILAMLSTNHR-- 233 (323)
Q Consensus 173 -------~~~~~~~~~al~aL~~L~~~~~-~~~~i~~~-g~v~~Lv~ll~~------~--~~~~~a~~~L~~l~~~~~-- 233 (323)
..+..+++.|.++|+||+..++ +|..+++. |+++.|+.++++ . ..++.|+++|+||+..-+
T Consensus 196 ~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e 275 (584)
T 3l6x_A 196 EDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHRE 275 (584)
T ss_dssp ------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHH
T ss_pred ccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcccccc
Confidence 1246899999999999999885 48888886 667899999974 1 478999999999997621
Q ss_pred ------------------------HHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccCh---HhHHHHHhhcc
Q 020640 234 ------------------------AVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR---TKWKAMREEES 286 (323)
Q Consensus 234 ------------------------~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~---~~~~~~~~~~~ 286 (323)
+...+++.++++.|+.+++.+.++.++++|+++|++||.... ...+..+.+.+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~ 355 (584)
T 3l6x_A 276 IPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEK 355 (584)
T ss_dssp STTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHH
T ss_pred ccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcC
Confidence 112223445678889999866569999999999999987652 22345667789
Q ss_pred cHHHHHHHhhcCCHHHHHHHHHHHHHHhcchh
Q 020640 287 THGTISKLAQDGTARAKRKATGILERLKRTVN 318 (323)
Q Consensus 287 ~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 318 (323)
+++.|++++.++++.+++.|+++|+||+....
T Consensus 356 glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~ 387 (584)
T 3l6x_A 356 ALSAIADLLTNEHERVVKAASGALRNLAVDAR 387 (584)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCS
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhCChh
Confidence 99999999999999999999999999997653
No 5
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=6.9e-31 Score=258.77 Aligned_cols=280 Identities=13% Similarity=0.131 Sum_probs=243.7
Q ss_pred hhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccCh-----------------------------hhH---HHHhhhcCC
Q 020640 28 ADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMP-----------------------------SFR---ALFGESHDA 74 (323)
Q Consensus 28 ~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~-----------------------------~~~---~~i~~~~g~ 74 (323)
.+.|++|.||++++ +++.++..|+++|.|++.+.+ ..+ +.+.+ .|+
T Consensus 418 ~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vve-aGa 496 (810)
T 3now_A 418 EDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLAN-EGI 496 (810)
T ss_dssp HCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHH-TTH
T ss_pred HccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHH-CcC
Confidence 45789999999996 678899999999999997542 122 56788 999
Q ss_pred HHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCc
Q 020640 75 IPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN 154 (323)
Q Consensus 75 i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~ 154 (323)
+|.|+.+|+ ++++.+++.|+++|.|++.++++|..+++.| +++.|+.+|+++++..++.|+++|.+|+.+.+.
T Consensus 497 Vp~LV~LL~------s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~G-aip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p 569 (810)
T 3now_A 497 TTALCALAK------TESHNSQELIARVLNAVCGLKELRGKVVQEG-GVKALLRMALEGTEKGKRHATQALARIGITINP 569 (810)
T ss_dssp HHHHHHHHT------CCCHHHHHHHHHHHHHHHTSHHHHHHHHHTT-HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHc------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHCC-CHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCh
Confidence 999999999 7789999999999999998888999999865 799999999999999999999999999865544
Q ss_pred hhhhh---ccCChHHHHHHhhhc-CHhHHHHHHHHHHHhccCC-chhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHH
Q 020640 155 KEVIG---KSGALKPLIDLLDEG-HQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAM 227 (323)
Q Consensus 155 ~~~i~---~~g~i~~Lv~lL~~~-~~~~~~~al~aL~~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~ 227 (323)
...+. ..|++++|+++|..+ +...+..|+++|.||+..+ +++..+++.|+++.|+.++.++ .+++.|+++|+|
T Consensus 570 ~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~N 649 (810)
T 3now_A 570 EVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCN 649 (810)
T ss_dssp HHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHH
T ss_pred hhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 33221 146999999999876 4445678999999999986 6788899999999999999876 689999999999
Q ss_pred HhcCHHHHHHHHh-cCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHH
Q 020640 228 LSTNHRAVEEIGD-LGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKA 306 (323)
Q Consensus 228 l~~~~~~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A 306 (323)
|+.+++.+..+++ .|+++.|+.++...+ ..++..|+++|.+|+..++...+.++...|+++.|++++.+++.++++.|
T Consensus 650 La~~~~~~~~~v~~~g~l~~Lv~LL~s~d-~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A 728 (810)
T 3now_A 650 LVMSEDVIKMFEGNNDRVKFLALLCEDED-EETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRG 728 (810)
T ss_dssp HTTSHHHHHHHHSSSSHHHHHHHGGGCSS-HHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHH
T ss_pred HhCChHHHHHHHhccCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHH
Confidence 9999999999886 689999999999654 89999999999999997666667777558999999999999999999999
Q ss_pred HHHHHHHhcc
Q 020640 307 TGILERLKRT 316 (323)
Q Consensus 307 ~~~L~~l~~~ 316 (323)
.|+|.|+...
T Consensus 729 ~~aL~NL~~~ 738 (810)
T 3now_A 729 IVIILNMINA 738 (810)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhC
Confidence 9999999864
No 6
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=6e-31 Score=248.03 Aligned_cols=285 Identities=18% Similarity=0.187 Sum_probs=241.0
Q ss_pred hhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640 28 ADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 106 (323)
Q Consensus 28 ~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l 106 (323)
.+.|++|.|+++|+ +++..+..|+++|+|++.++++++..+.+ .|+||.|+++|+. ++++++++.|+++|+||
T Consensus 41 ~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~-~G~i~~Lv~lL~~-----~~~~~~~~~a~~aL~nL 114 (457)
T 1xm9_A 41 YQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRR-QNGIREAVSLLRR-----TGNAEIQKQLTGLLWNL 114 (457)
T ss_dssp HHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHHhh-----CCCHHHHHHHHHHHHHH
Confidence 46799999999996 66889999999999999877999999999 9999999999983 44789999999999999
Q ss_pred ccccchhhhhhccCCcHHHHHHHHh--------cC--------CHHHHHHHHHHHHHhcCCCCchhhhhcc-CChHHHHH
Q 020640 107 SIHDNNKKLVAETPMVIPLLMDALR--------SG--------TIETRSNAAAALFTLSALDSNKEVIGKS-GALKPLID 169 (323)
Q Consensus 107 s~~~~~~~~i~~~~g~i~~Lv~ll~--------~~--------~~~~~~~a~~~L~~L~~~~~~~~~i~~~-g~i~~Lv~ 169 (323)
+.+++++..+++ | +++.|+.++. ++ ++++...++++|+||+.+++++..+++. |+++.|+.
T Consensus 115 a~~~~~~~~i~~-g-~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~ 192 (457)
T 1xm9_A 115 SSTDELKEELIA-D-ALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMA 192 (457)
T ss_dssp HTSSSTHHHHHH-H-HHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHH
T ss_pred hcCHHhHHHHHh-c-cHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHH
Confidence 999888998988 5 6999999993 22 4566679999999999888889999986 99999998
Q ss_pred Hhhhc---------------------------------------------------------------------------
Q 020640 170 LLDEG--------------------------------------------------------------------------- 174 (323)
Q Consensus 170 lL~~~--------------------------------------------------------------------------- 174 (323)
+|.++
T Consensus 193 lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (457)
T 1xm9_A 193 YVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETN 272 (457)
T ss_dssp HHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSS
T ss_pred HHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccC
Confidence 88641
Q ss_pred ------------------------CHhHHHHHHHHHHHhccCCchh-----HHHH-hhCchHHHHHHhhcC--chHHHHH
Q 020640 175 ------------------------HQSAMKDVASAIFNLCITHENK-----ARAV-RDGGVSVILKKIMDG--VHVDELL 222 (323)
Q Consensus 175 ------------------------~~~~~~~al~aL~~L~~~~~~~-----~~i~-~~g~v~~Lv~ll~~~--~~~~~a~ 222 (323)
++.+++.|+++|+|||.++... +.++ +.|+++.|+++|.++ .++..|+
T Consensus 273 ~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~ 352 (457)
T 1xm9_A 273 PKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGA 352 (457)
T ss_dssp CCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHH
T ss_pred chHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHH
Confidence 2345566889999998865321 2344 579999999999987 6899999
Q ss_pred HHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCC-----hhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhc
Q 020640 223 AILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTC-----DRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD 297 (323)
Q Consensus 223 ~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~-----~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~ 297 (323)
++|.|++.+++++..+. .|+++.|+++|..++. +++...++.+|.++...+++ ....+.+.|+++.|++++.+
T Consensus 353 ~aL~nls~~~~~~~~i~-~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~-~~~~i~~~g~l~~L~~L~~~ 430 (457)
T 1xm9_A 353 SLLSNMSRHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQ-LAKQYFSSSMLNNIINLCRS 430 (457)
T ss_dssp HHHHHHHTSGGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTH-HHHHHCCHHHHHHHHHHHHC
T ss_pred HHHHHHhcCHHHHHHHH-HhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHH-HHHHHHHcCCHHHHHHHHcC
Confidence 99999999988887665 4789999999996532 35788999999999987766 45556689999999999999
Q ss_pred C-CHHHHHHHHHHHHHHhcchhhccC
Q 020640 298 G-TARAKRKATGILERLKRTVNLTHT 322 (323)
Q Consensus 298 ~-~~~~~~~A~~~L~~l~~~~~~~~~ 322 (323)
+ +++++++|.++|+++..+..++.+
T Consensus 431 ~~~~~i~~~A~~~L~~~~~~~~l~~~ 456 (457)
T 1xm9_A 431 SASPKAAEAARLLLSDMWSSKELQGV 456 (457)
T ss_dssp TTCHHHHHHHHHHHHTTSSSTTCSSC
T ss_pred CCcHHHHHHHHHHHHHHHcchhhhcc
Confidence 9 999999999999999988877654
No 7
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.98 E-value=2.4e-30 Score=247.18 Aligned_cols=279 Identities=14% Similarity=0.143 Sum_probs=244.0
Q ss_pred hhhhHHHHHHHHhc--CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHH
Q 020640 28 ADRDHFLSLLKKMS--ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN 105 (323)
Q Consensus 28 ~~~~~i~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ 105 (323)
-+.|+||.||++|+ +++.+|.+|+++|.|++.++++++..+++ .|+||.|+.+|+ ++++++++.|+++|.|
T Consensus 97 i~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~-~GaIp~Lv~lL~------s~~~~v~e~A~~aL~n 169 (510)
T 3ul1_B 97 IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD-GGAIPAFISLLA------SPHAHISEQAVWALGN 169 (510)
T ss_dssp HHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHTT------CSCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCCHHHHHHHHc------CCCHHHHHHHHHHHHH
Confidence 45699999999995 44789999999999999999999999999 999999999999 7899999999999999
Q ss_pred hccccc-hhhhhhccCCcHHHHHHHHhcCC-----HHHHHHHHHHHHHhcCCCCchhhhhc-cCChHHHHHHhhhcCHhH
Q 020640 106 LSIHDN-NKKLVAETPMVIPLLMDALRSGT-----IETRSNAAAALFTLSALDSNKEVIGK-SGALKPLIDLLDEGHQSA 178 (323)
Q Consensus 106 ls~~~~-~~~~i~~~~g~i~~Lv~ll~~~~-----~~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~ 178 (323)
++.+.+ .|..+.+.| +++.|+.++.+.+ ...+..+++++.+++.+......+.. .|+++.|++++.++++.+
T Consensus 170 La~d~~~~r~~v~~~G-~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v 248 (510)
T 3ul1_B 170 IAGDGSAFRDLVIKHG-AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEV 248 (510)
T ss_dssp HHTTCHHHHHHHHHTT-CHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHhCCHHHHHHHHHcC-ChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHH
Confidence 998765 577777765 6999999997653 46788999999999987766555544 789999999999999999
Q ss_pred HHHHHHHHHHhccCCchhHH-HHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhcc
Q 020640 179 MKDVASAIFNLCITHENKAR-AVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRES 254 (323)
Q Consensus 179 ~~~al~aL~~L~~~~~~~~~-i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~ 254 (323)
+..++++|++|+.+++.+.. +++.|+++.|+.+|.++ .++..++++|.|++.. +..+..+++.|+++.|+.+++++
T Consensus 249 ~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~ 328 (510)
T 3ul1_B 249 LADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP 328 (510)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS
T ss_pred HHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC
Confidence 99999999999998866554 56779999999999977 6789999999999884 67788899999999999999965
Q ss_pred CChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640 255 TCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 316 (323)
Q Consensus 255 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 316 (323)
+ +.++..|+++|.+++..++... ..+.+.|+++.|+.++.+++..+++.|+++|.|++..
T Consensus 329 ~-~~v~~~A~~aL~nl~a~~~~~~-~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~ 388 (510)
T 3ul1_B 329 K-TNIQKEATWTMSNITAGRQDQI-QQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG 388 (510)
T ss_dssp S-HHHHHHHHHHHHHHTTSCHHHH-HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHHHcCcHHHH-HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 5 8999999999999999887654 5555789999999999999999999999999999864
No 8
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.97 E-value=7.4e-31 Score=245.34 Aligned_cols=284 Identities=16% Similarity=0.181 Sum_probs=234.5
Q ss_pred hhhhHHHHHHHHhcC-C------------chhHHHHHHHHHHHhccChhhHHHHhhhcCCH----------HHHHHhhcc
Q 020640 28 ADRDHFLSLLKKMSA-T------------LPDQTEAAKELRLLTKRMPSFRALFGESHDAI----------PQLLSPLSE 84 (323)
Q Consensus 28 ~~~~~i~~Lv~~l~~-~------------~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i----------~~Lv~lL~~ 84 (323)
...|++|.||++|+. + ++.+.+|+++|.|++.++++......+ .|++ +.+++++..
T Consensus 67 ~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~ 145 (458)
T 3nmz_A 67 RQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRRE-IRVLHLLEQIRAYCETCWEWQEA 145 (458)
T ss_dssp HHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHH-HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHH-HHHHHHHHHhhhhhHHHHHHHHh
Confidence 567999999999962 2 588999999999999999887777777 7777 666777765
Q ss_pred ccc-CC-CCCHHHHH-------HHHHHHHHhccccchhhhhhccCCcHHHHHHHHhc-----------CCHHHHHHHHHH
Q 020640 85 SKC-EN-GINPNLQE-------DVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRS-----------GTIETRSNAAAA 144 (323)
Q Consensus 85 ~~~-~~-~~~~~~~~-------~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~-----------~~~~~~~~a~~~ 144 (323)
... .+ +.++ +.+ .|+++|.|++.++++|..+.+.| +++.|+.+|.. .++.++..|+++
T Consensus 146 ~~~~~~~~~~~-~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G-~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~a 223 (458)
T 3nmz_A 146 HEPGMDQDKNP-MPAPVEHQICPAVCVLMKLSFDEEHRHAMNELG-GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMA 223 (458)
T ss_dssp TSSSSCCCSCC---CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTT-HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred hccccccccCC-ccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCC-CHHHHHHHHhhhhcccccccCCCCHHHHHHHHHH
Confidence 421 00 0111 333 89999999999988999999975 69999999952 246789999999
Q ss_pred HHHhcCCCC-chhhhhc-cCChHHHHHHhhhcCHhHHHHHHHHHHHhccC--CchhHHHHhhCchHHHHHHhh-cC--ch
Q 020640 145 LFTLSALDS-NKEVIGK-SGALKPLIDLLDEGHQSAMKDVASAIFNLCIT--HENKARAVRDGGVSVILKKIM-DG--VH 217 (323)
Q Consensus 145 L~~L~~~~~-~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~--~~~~~~i~~~g~v~~Lv~ll~-~~--~~ 217 (323)
|.||+.+++ ++..+.. .|+++.|+++|++++++++..|+++|+||+.. ++++..+++.|+++.|+++|. ++ .+
T Consensus 224 L~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v 303 (458)
T 3nmz_A 224 LTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKEST 303 (458)
T ss_dssp HHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHH
T ss_pred HHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHH
Confidence 999998765 5656654 56699999999999999999999999999985 368888999999999999864 33 67
Q ss_pred HHHHHHHHHHHhc-CHHHHHHHH-hcCCHHHHHHHHhccCCh---hHHHHHHHHHHHhcc---cChHhHHHHHhhcccHH
Q 020640 218 VDELLAILAMLST-NHRAVEEIG-DLGGVSCMLRIIRESTCD---RNKENCIAILHTICL---SDRTKWKAMREEESTHG 289 (323)
Q Consensus 218 ~~~a~~~L~~l~~-~~~~~~~i~-~~g~i~~Lv~ll~~~~~~---~~~~~a~~~L~~L~~---~~~~~~~~~~~~~~~i~ 289 (323)
++.++++|+||+. +++++..|+ ..|+++.|+++++.+++. .+++.|+++|++|+. .+++. +..+.+.|+++
T Consensus 304 ~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~-~~~i~~~G~i~ 382 (458)
T 3nmz_A 304 LKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH-RQILRENNCLQ 382 (458)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHH-HHHHHHcccHH
Confidence 8999999999999 889999998 689999999999965422 489999999999997 56554 45556799999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640 290 TISKLAQDGTARAKRKATGILERLKR 315 (323)
Q Consensus 290 ~L~~ll~~~~~~~~~~A~~~L~~l~~ 315 (323)
.|++++.+++..+++.|+++|+||+.
T Consensus 383 ~Lv~LL~~~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 383 TLLQHLKSHSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHc
Confidence 99999999999999999999999994
No 9
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.97 E-value=1e-29 Score=243.99 Aligned_cols=279 Identities=14% Similarity=0.138 Sum_probs=244.9
Q ss_pred hhhhHHHHHHHHhc--CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHH
Q 020640 28 ADRDHFLSLLKKMS--ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN 105 (323)
Q Consensus 28 ~~~~~i~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ 105 (323)
.+.|++|.||++|+ +++.++.+|+++|.|++.++++.+..+++ .|+||.|+.+|. ++++.+++.|+++|.|
T Consensus 116 i~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~-~Gaip~Lv~LL~------s~~~~v~e~A~~aL~n 188 (529)
T 3tpo_A 116 IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD-GGAIPAFISLLA------SPHAHISEQAVWALGN 188 (529)
T ss_dssp HHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHTT------CSCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHc------CCCHHHHHHHHHHHHH
Confidence 45699999999995 44889999999999999988888899999 999999999999 7899999999999999
Q ss_pred hccccc-hhhhhhccCCcHHHHHHHHhcC-----CHHHHHHHHHHHHHhcCCCCchhhhhc-cCChHHHHHHhhhcCHhH
Q 020640 106 LSIHDN-NKKLVAETPMVIPLLMDALRSG-----TIETRSNAAAALFTLSALDSNKEVIGK-SGALKPLIDLLDEGHQSA 178 (323)
Q Consensus 106 ls~~~~-~~~~i~~~~g~i~~Lv~ll~~~-----~~~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~ 178 (323)
++.+.+ +|..+.+.| +++.|+.++... .......++++|.+++.+......+.. .|+++.|++++.++++.+
T Consensus 189 La~~~~~~r~~i~~~g-~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v 267 (529)
T 3tpo_A 189 IAGAGSAFRDLVIKHG-AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEV 267 (529)
T ss_dssp HHTTCHHHHHHHHHTT-CHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHH
T ss_pred HhccCHHHHHHHHHcC-CcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHH
Confidence 998754 788888865 699999999765 346788999999999987765555444 789999999999999999
Q ss_pred HHHHHHHHHHhccCCchhH-HHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhcc
Q 020640 179 MKDVASAIFNLCITHENKA-RAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRES 254 (323)
Q Consensus 179 ~~~al~aL~~L~~~~~~~~-~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~ 254 (323)
+..++++|.+++.+++.+. .+++.|+++.|+.+|.++ .++..++++|.|++.. +..+..+++.|+++.|+.+++++
T Consensus 268 ~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~ 347 (529)
T 3tpo_A 268 LADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP 347 (529)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCC
Confidence 9999999999999886554 456789999999999977 6789999999999884 77888899999999999999965
Q ss_pred CChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640 255 TCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 316 (323)
Q Consensus 255 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 316 (323)
+ +.++..|+++|.+++.+++... ..+.+.|+++.|+.++.+++..+++.|+|+|.|++..
T Consensus 348 ~-~~i~~~a~~aL~nl~~~~~~~~-~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~ 407 (529)
T 3tpo_A 348 K-TNIQKEATWTMSNITAGRQDQI-QQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSG 407 (529)
T ss_dssp S-HHHHHHHHHHHHHHHTSCHHHH-HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHHhcccHHHH-HHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 5 8999999999999999887644 4555789999999999999999999999999999864
No 10
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=1.2e-30 Score=236.94 Aligned_cols=244 Identities=21% Similarity=0.226 Sum_probs=213.4
Q ss_pred hhhhHHHHHHHHhcC------------CchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHH
Q 020640 28 ADRDHFLSLLKKMSA------------TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNL 95 (323)
Q Consensus 28 ~~~~~i~~Lv~~l~~------------~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~ 95 (323)
.+.|+++.|+.+|.. ++..|..|+++|.|++..++.++..+....|+||.|+++|+ ++++++
T Consensus 70 ~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~------s~~~~v 143 (354)
T 3nmw_A 70 NELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK------SESEDL 143 (354)
T ss_dssp HHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGG------CSCHHH
T ss_pred HHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHC------CCCHHH
Confidence 567899999999941 25679999999999998877788888651456999999999 778999
Q ss_pred HHHHHHHHHHhccc--cchhhhhhccCCcHHHHHHHH-hcCCHHHHHHHHHHHHHhcC-CCCchhhhh-ccCChHHHHHH
Q 020640 96 QEDVITTLLNLSIH--DNNKKLVAETPMVIPLLMDAL-RSGTIETRSNAAAALFTLSA-LDSNKEVIG-KSGALKPLIDL 170 (323)
Q Consensus 96 ~~~a~~~L~~ls~~--~~~~~~i~~~~g~i~~Lv~ll-~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~-~~g~i~~Lv~l 170 (323)
++.|+.+|+||+.. ++++..+.+.| .++.|+.+| +++++++++.++++|+||+. .++++..++ ..|+++.|+++
T Consensus 144 ~~~A~~aL~nLs~~~~~~~k~~i~~~G-~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~l 222 (354)
T 3nmw_A 144 QQVIASVLRNLSWRADVNSKKTLREVG-SVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGT 222 (354)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHTT-HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHCC-CHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHH
Confidence 99999999999985 34788888865 699999975 66789999999999999998 557888888 69999999999
Q ss_pred hhhcCH----hHHHHHHHHHHHhcc----CCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc-CHHHHHHHH
Q 020640 171 LDEGHQ----SAMKDVASAIFNLCI----THENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIG 239 (323)
Q Consensus 171 L~~~~~----~~~~~al~aL~~L~~----~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~-~~~~~~~i~ 239 (323)
|.++++ .+++.|+++|+||+. +++++..+.+.|+++.|+.+|+++ .+++.|+++|+|++. +++++..++
T Consensus 223 L~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~ 302 (354)
T 3nmw_A 223 LTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALW 302 (354)
T ss_dssp TTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred hccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 998654 489999999999996 667888899999999999999987 679999999999995 789999999
Q ss_pred hcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHH
Q 020640 240 DLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWK 279 (323)
Q Consensus 240 ~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~ 279 (323)
+.|+++.|++++++++ +++++.|+++|.+|+.+.+..++
T Consensus 303 ~~G~i~~Lv~LL~s~~-~~i~~~A~~aL~nL~~~~~~~~~ 341 (354)
T 3nmw_A 303 DMGAVSMLKNLIHSKH-KMIAMGSAAALRNLMANRPAKYK 341 (354)
T ss_dssp HTTHHHHHHTTTTCSS-HHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCCHHHHh
Confidence 9999999999999765 89999999999999999876543
No 11
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.97 E-value=3.5e-29 Score=240.27 Aligned_cols=287 Identities=14% Similarity=0.166 Sum_probs=246.0
Q ss_pred hhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640 28 ADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 106 (323)
Q Consensus 28 ~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l 106 (323)
.+.|++|.|+.++. .+..++..|+++|.+++.+++++|..+.+ .|++++|+.+|..... ......++..++++|.++
T Consensus 159 v~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~-~g~i~~Ll~lL~~~~~-~~~~~~~~~~a~~~L~nl 236 (529)
T 3tpo_A 159 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIK-HGAIDPLLALLAVPDL-STLACGYLRNLTWTLSNL 236 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHTTCSSCG-GGSCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHH-cCCcHHHHHHHhccch-hHhHHHHHHHHHHHHHHH
Confidence 55689999999996 67899999999999999989999999999 9999999999984211 012346788999999999
Q ss_pred ccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCch-hhhhccCChHHHHHHhhhcCHhHHHHHHHH
Q 020640 107 SIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNK-EVIGKSGALKPLIDLLDEGHQSAMKDVASA 185 (323)
Q Consensus 107 s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~al~a 185 (323)
+.+.+....+....|+++.|+.++.+++++++..++++|.+++.+.+.+ ..+++.|+++.|+++|.+++..++..++++
T Consensus 237 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~a 316 (529)
T 3tpo_A 237 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 316 (529)
T ss_dssp HCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred HhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHH
Confidence 9887765555444457999999999999999999999999999876554 455679999999999999999999999999
Q ss_pred HHHhccCC-chhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhccCChhHHH
Q 020640 186 IFNLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKE 261 (323)
Q Consensus 186 L~~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~ 261 (323)
|+|++.++ +.+..+++.|+++.|+.+|.++ .+++.|+++|.|++.+ ++.+..+++.|+++.|+.++.+++ .+++.
T Consensus 317 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v~~ 395 (529)
T 3tpo_A 317 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD-FKTQK 395 (529)
T ss_dssp HHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSC-HHHHH
T ss_pred HHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCC-HHHHH
Confidence 99998876 4566778899999999999977 6899999999999984 778888999999999999999765 99999
Q ss_pred HHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 020640 262 NCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 317 (323)
Q Consensus 262 ~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 317 (323)
.|+++|.|++.+........+.+.|++++|++++.+.++++...+.++|.++.++.
T Consensus 396 ~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~ 451 (529)
T 3tpo_A 396 AAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 451 (529)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999998643323344457899999999999999999999999999998654
No 12
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.97 E-value=8.9e-30 Score=243.30 Aligned_cols=283 Identities=17% Similarity=0.187 Sum_probs=230.3
Q ss_pred hhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhcc-ChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHH
Q 020640 28 ADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKR-MPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN 105 (323)
Q Consensus 28 ~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ 105 (323)
.+.|+||.||++|+ ++..+|..|+++|.|++.. +++++..+.+ .|+|+.|+++|+. ..+.++++.++.+|++
T Consensus 87 ~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~-~GaIp~LV~LL~s-----~~~~~~~e~aa~aL~n 160 (584)
T 3l6x_A 87 RKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKN-CDGVPALVRLLRK-----ARDMDLTEVITGTLWN 160 (584)
T ss_dssp HHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHH-TTHHHHHHHHHHH-----CCSHHHHHHHHHHHHH
T ss_pred HHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHH-cCCHHHHHHHHcC-----CCCHHHHHHHHHHHHH
Confidence 45689999999996 6789999999999999975 6899999999 9999999999994 2578999999999999
Q ss_pred hccccchhhhhhccCCcHHHHHHHHh------------------cCCHHHHHHHHHHHHHhcCCCC-chhhhhc-cCChH
Q 020640 106 LSIHDNNKKLVAETPMVIPLLMDALR------------------SGTIETRSNAAAALFTLSALDS-NKEVIGK-SGALK 165 (323)
Q Consensus 106 ls~~~~~~~~i~~~~g~i~~Lv~ll~------------------~~~~~~~~~a~~~L~~L~~~~~-~~~~i~~-~g~i~ 165 (323)
||.+++++..|++ +| ++.|+.++. ..++++++.++++|+||+...+ ++..+++ .|+++
T Consensus 161 LS~~~~~k~~I~~-~a-lp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~ 238 (584)
T 3l6x_A 161 LSSHDSIKMEIVD-HA-LHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVD 238 (584)
T ss_dssp HTTSGGGHHHHHH-HT-HHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHH
T ss_pred HhCCchhhHHHHh-cc-HHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHH
Confidence 9999889999996 54 999999872 1257999999999999997664 4777777 45566
Q ss_pred HHHHHhhh------------------------------------------------------------------------
Q 020640 166 PLIDLLDE------------------------------------------------------------------------ 173 (323)
Q Consensus 166 ~Lv~lL~~------------------------------------------------------------------------ 173 (323)
.|+.++++
T Consensus 239 ~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~ 318 (584)
T 3l6x_A 239 ALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLK 318 (584)
T ss_dssp HHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHc
Confidence 77776653
Q ss_pred --cCHhHHHHHHHHHHHhccCCc-----hhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCH
Q 020640 174 --GHQSAMKDVASAIFNLCITHE-----NKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGV 244 (323)
Q Consensus 174 --~~~~~~~~al~aL~~L~~~~~-----~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i 244 (323)
.++.+++.|+++|+|||.+.. ++..+.+.|+++.|+++|.++ .+++.++++|.||+.++.++..| ..|++
T Consensus 319 ~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~i 397 (584)
T 3l6x_A 319 ESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAI 397 (584)
T ss_dssp HCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCH
Confidence 123445566666666665441 122223458899999999976 68999999999999998888766 67899
Q ss_pred HHHHHHHhccC-------ChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcC--CHHHHHHHHHHHHHHhc
Q 020640 245 SCMLRIIREST-------CDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG--TARAKRKATGILERLKR 315 (323)
Q Consensus 245 ~~Lv~ll~~~~-------~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~A~~~L~~l~~ 315 (323)
+.||++|..++ ++.+...|+++|.||+..++...+ .+.+.|+++.|+.++.++ ++.+++.|+++|++|..
T Consensus 398 p~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~-~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 398 PNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAK-KLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp HHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHH-HHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHH-HHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 99999998652 356788999999999988877554 445799999999999986 89999999999999998
Q ss_pred chhhc
Q 020640 316 TVNLT 320 (323)
Q Consensus 316 ~~~~~ 320 (323)
+..+.
T Consensus 477 ~~elr 481 (584)
T 3l6x_A 477 YKELR 481 (584)
T ss_dssp SHHHH
T ss_pred CHHHH
Confidence 77654
No 13
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.97 E-value=3.1e-29 Score=239.57 Aligned_cols=287 Identities=13% Similarity=0.167 Sum_probs=245.3
Q ss_pred hhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640 28 ADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 106 (323)
Q Consensus 28 ~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l 106 (323)
.+.|++|.|+++|+ ++.+++..|+++|.|++.+++++|..+.+ .|++++|+.+|..... ......++..++++|.++
T Consensus 140 v~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~-~G~i~~Ll~lL~~~~~-~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 140 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIK-HGAIDPLLALLAVPDL-STLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHHTCSSCG-GGSCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH-cCChHHHHHHHHhccc-hhhhHHHHHHHHHHHHHH
Confidence 45689999999996 67899999999999999988999999999 9999999999984210 012345788999999999
Q ss_pred ccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCch-hhhhccCChHHHHHHhhhcCHhHHHHHHHH
Q 020640 107 SIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNK-EVIGKSGALKPLIDLLDEGHQSAMKDVASA 185 (323)
Q Consensus 107 s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~al~a 185 (323)
+.+......+....|+++.|+.++.+++++++..++++|.+|+.+.+++ ..+.+.|+++.|+++|.+++..++..++++
T Consensus 218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~a 297 (510)
T 3ul1_B 218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297 (510)
T ss_dssp HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHH
Confidence 9887765555444457999999999999999999999999999876654 455679999999999999999999999999
Q ss_pred HHHhccCCc-hhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhccCChhHHH
Q 020640 186 IFNLCITHE-NKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKE 261 (323)
Q Consensus 186 L~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~ 261 (323)
|+|++..++ .+..+++.|+++.|+.+|+++ .+++.++++|.|++.+ ++.+..+.+.|+++.|+.++++++ .+++.
T Consensus 298 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v~~ 376 (510)
T 3ul1_B 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD-FKTQK 376 (510)
T ss_dssp HHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSC-HHHHH
T ss_pred HHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCC-HHHHH
Confidence 999988774 566778899999999999877 6899999999999984 788888999999999999999765 99999
Q ss_pred HHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 020640 262 NCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 317 (323)
Q Consensus 262 ~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 317 (323)
.|+++|.|++..........+.+.|++++|++++.+.++++...+.++|.++.++.
T Consensus 377 ~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~ 432 (510)
T 3ul1_B 377 EAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 432 (510)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999998643333344457899999999999999999999999999998754
No 14
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.97 E-value=1.8e-29 Score=248.77 Aligned_cols=284 Identities=17% Similarity=0.125 Sum_probs=244.9
Q ss_pred hhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640 28 ADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 106 (323)
Q Consensus 28 ~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l 106 (323)
.+.|++|.|+.+++ +++.+|.+|+++|.|++. ++++|..+.+ .|++++|+.+|+ +.++..++.|+++|.++
T Consensus 492 veaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~-~Gaip~Lv~LL~------s~~~~~k~~Aa~AL~nL 563 (810)
T 3now_A 492 ANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQ-EGGVKALLRMAL------EGTEKGKRHATQALARI 563 (810)
T ss_dssp HHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHH-TTHHHHHHHHHH------SSCHHHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHH-CCCHHHHHHHHc------cCCHHHHHHHHHHHHHH
Confidence 35689999999996 668999999999999995 6779999999 999999999999 66789999999999999
Q ss_pred ccccchhhhhhc--cCCcHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCC-CchhhhhccCChHHHHHHhhhcCHhHHHHH
Q 020640 107 SIHDNNKKLVAE--TPMVIPLLMDALRSG-TIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSAMKDV 182 (323)
Q Consensus 107 s~~~~~~~~i~~--~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a 182 (323)
+...+....+.. ..|+++.|+.+|.++ +...+..|+++|.||+..+ +++..+++.|+++.|+.++.++++.++..|
T Consensus 564 ~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A 643 (810)
T 3now_A 564 GITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAA 643 (810)
T ss_dssp HHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHH
T ss_pred hcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHH
Confidence 876554332211 113699999999866 4455678999999999774 678889999999999999999999999999
Q ss_pred HHHHHHhccCCchhHHHHh-hCchHHHHHHhhcC--chHHHHHHHHHHHhc-CHHHHHHHHh-cCCHHHHHHHHhccCCh
Q 020640 183 ASAIFNLCITHENKARAVR-DGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGD-LGGVSCMLRIIRESTCD 257 (323)
Q Consensus 183 l~aL~~L~~~~~~~~~i~~-~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~-~~~~~~~i~~-~g~i~~Lv~ll~~~~~~ 257 (323)
+++|+||+.+++.+..+++ .|+++.|+.++.++ .+++.|+++|+|++. ++...+.+++ .|+++.|+.++++++ .
T Consensus 644 ~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d-~ 722 (810)
T 3now_A 644 AQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPS-P 722 (810)
T ss_dssp HHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSS-H
T ss_pred HHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCC-H
Confidence 9999999999998888886 69999999999876 689999999999999 7888888988 899999999999765 9
Q ss_pred hHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcC---CHHHHHHHHHHHHHHhcchhhcc
Q 020640 258 RNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG---TARAKRKATGILERLKRTVNLTH 321 (323)
Q Consensus 258 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~~~~~A~~~L~~l~~~~~~~~ 321 (323)
+++..|+++|.|++..+++. ...+.+.|++++|+++++.. +.++.+.|..+|.++.++..+..
T Consensus 723 ~vq~~A~~aL~NL~~~s~e~-~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~~~ 788 (810)
T 3now_A 723 AVQHRGIVIILNMINAGEEI-AKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIER 788 (810)
T ss_dssp HHHHHHHHHHHHHHTTCHHH-HHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHhCCHHH-HHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCccC
Confidence 99999999999999877654 45556899999999998654 79999999999999998776543
No 15
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.96 E-value=1.2e-27 Score=229.26 Aligned_cols=280 Identities=15% Similarity=0.172 Sum_probs=247.2
Q ss_pred hhhhHHHHHHHHhc-CC-chhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHH
Q 020640 28 ADRDHFLSLLKKMS-AT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN 105 (323)
Q Consensus 28 ~~~~~i~~Lv~~l~-~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ 105 (323)
...|.++.|+++|. ++ +.++..|+++|.+++..+++++..+.+ .|+++.|+.+|. ++++.++..|+++|.+
T Consensus 114 ~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~lL~------~~~~~v~~~a~~aL~~ 186 (528)
T 4b8j_A 114 IQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVID-HGAVPIFVKLLG------SSSDDVREQAVWALGN 186 (528)
T ss_dssp HHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHTT------CSCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHh-CCcHHHHHHHhc------CCCHHHHHHHHHHHHH
Confidence 44589999999996 44 889999999999999988999999999 999999999999 7789999999999999
Q ss_pred hccccc-hhhhhhccCCcHHHHHHHH-hcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHH
Q 020640 106 LSIHDN-NKKLVAETPMVIPLLMDAL-RSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVA 183 (323)
Q Consensus 106 ls~~~~-~~~~i~~~~g~i~~Lv~ll-~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al 183 (323)
++.+.+ ++..+... |+++.|+.++ .+.+..++..++++|.+|+...+........|+++.|++++.++++.++..++
T Consensus 187 l~~~~~~~~~~i~~~-g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~ 265 (528)
T 4b8j_A 187 VAGDSPKCRDLVLAN-GALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDAC 265 (528)
T ss_dssp HHHTCHHHHHHHHHT-TCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHH
T ss_pred HhCCChhhHHHHHHC-CcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 997755 67777776 4799999999 56789999999999999998765555555689999999999999999999999
Q ss_pred HHHHHhccCCchh-HHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc-CHHHHHHHHhcCCHHHHHHHHhccCChhH
Q 020640 184 SAIFNLCITHENK-ARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRN 259 (323)
Q Consensus 184 ~aL~~L~~~~~~~-~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~ 259 (323)
++|.+|+...+.+ ..+++.|+++.|+.+|.++ .++..|+++|.+++. ++..+..+++.|+++.|+.++.++.++.+
T Consensus 266 ~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v 345 (528)
T 4b8j_A 266 WALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSI 345 (528)
T ss_dssp HHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHH
Confidence 9999999887665 4567889999999999977 689999999999999 47788888999999999999997624899
Q ss_pred HHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640 260 KENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 316 (323)
Q Consensus 260 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 316 (323)
+..|+++|.+++..++.....++ +.++++.|++++.++++.++..|+++|.+++..
T Consensus 346 ~~~A~~~L~nl~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 346 KKEACWTISNITAGNKDQIQAVI-NAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHH-HTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHH-HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 99999999999997766554554 679999999999999999999999999999875
No 16
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.96 E-value=1e-27 Score=207.21 Aligned_cols=240 Identities=20% Similarity=0.291 Sum_probs=215.2
Q ss_pred CCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccc-hhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 020640 73 DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN-NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL 151 (323)
Q Consensus 73 g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~ 151 (323)
|+++.|+++|+ +++++++..|+.+|.+++...+ ++..+.+.| +++.|+.++++++++++..++++|.+++..
T Consensus 2 ~~i~~L~~~L~------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g-~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 74 (252)
T 4hxt_A 2 NDVEKLVKLLT------STDSETQKEAARDLAEIASGPASAIKAIVDAG-GVEVLVKLLTSTDSEVQKEAARALANIASG 74 (252)
T ss_dssp CHHHHHHHHTT------CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT-HHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred CcHHHHHHHHc------CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCC-CHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 57999999999 6679999999999999988776 788888865 799999999999999999999999999987
Q ss_pred -CCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhcc-CCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHH
Q 020640 152 -DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCI-THENKARAVRDGGVSVILKKIMDG--VHVDELLAILAM 227 (323)
Q Consensus 152 -~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~-~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~ 227 (323)
++++..+.+.|+++.|+++++++++.++..++++|.+|+. .++.+..+.+.|+++.|+++++++ .++..++++|.+
T Consensus 75 ~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~ 154 (252)
T 4hxt_A 75 PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALAN 154 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6788899999999999999999999999999999999995 457788888999999999999977 689999999999
Q ss_pred Hhc-CHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHH
Q 020640 228 LST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKA 306 (323)
Q Consensus 228 l~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A 306 (323)
++. .+..+..+.+.|+++.|+.++.+++ +.++..|+++|.+++..+++.. ..+.+.|+++.|+++++++++.+++.|
T Consensus 155 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~-~~l~~~~~i~~L~~ll~~~~~~v~~~a 232 (252)
T 4hxt_A 155 IASGPDEAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPTSAI-KAIVDAGGVEVLQKLLTSTDSEVQKEA 232 (252)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSBHHHH-HHHHHTTHHHHHHHGGGCSCHHHHHHH
T ss_pred HHcCCHHHHHHHHHCcCHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHH-HHHHHCCCHHHHHHHHCCCcHHHHHHH
Confidence 999 4677788999999999999999654 8999999999999999877644 444578999999999999999999999
Q ss_pred HHHHHHHhcchhhcc
Q 020640 307 TGILERLKRTVNLTH 321 (323)
Q Consensus 307 ~~~L~~l~~~~~~~~ 321 (323)
.++|.+|+.+.+...
T Consensus 233 ~~~L~~l~~~~~~~~ 247 (252)
T 4hxt_A 233 QRALENIKSGGWLEH 247 (252)
T ss_dssp HHHHHHHHHTCBCCC
T ss_pred HHHHHHHHcCCCccc
Confidence 999999998665443
No 17
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.96 E-value=2.1e-27 Score=205.16 Aligned_cols=237 Identities=21% Similarity=0.287 Sum_probs=215.2
Q ss_pred hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640 31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 109 (323)
Q Consensus 31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~ 109 (323)
+.++.|++.|. ++++++..|+.+|.+++..+++++..+.+ .|+++.|+++|+ ++++.++..++.+|.+++.+
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~ll~------~~~~~v~~~a~~~L~~l~~~ 74 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVD-AGGVEVLVKLLT------STDSEVQKEAARALANIASG 74 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHTT------CSCHHHHHHHHHHHHHHTTS
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHH-CCCHHHHHHHHh------CCCHHHHHHHHHHHHHHHcC
Confidence 57899999996 66889999999999999888889999999 999999999999 67899999999999999988
Q ss_pred -cchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhc-CCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHH
Q 020640 110 -DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLS-ALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIF 187 (323)
Q Consensus 110 -~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~ 187 (323)
++++..+.+.+ +++.|+.++++++++++..++++|.+|+ ..++++..+.+.|+++.|++++.++++.++..++++|+
T Consensus 75 ~~~~~~~~~~~~-~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~ 153 (252)
T 4hxt_A 75 PDEAIKAIVDAG-GVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALA 153 (252)
T ss_dssp CHHHHHHHHHTT-HHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHCC-CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 55788888865 6999999999999999999999999999 55677888899999999999999999999999999999
Q ss_pred HhccCCc-hhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc-CHHHHHHHHhcCCHHHHHHHHhccCChhHHHHH
Q 020640 188 NLCITHE-NKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENC 263 (323)
Q Consensus 188 ~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a 263 (323)
+|+..++ .+..+.+.|+++.|+.++.++ .++..++++|.+++. +++.+..+.+.|+++.|++++++++ +.+++.|
T Consensus 154 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~-~~v~~~a 232 (252)
T 4hxt_A 154 NIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTD-SEVQKEA 232 (252)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHH
T ss_pred HHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCc-HHHHHHH
Confidence 9999775 456778889999999999976 689999999999998 5788889999999999999999655 8999999
Q ss_pred HHHHHHhcccChH
Q 020640 264 IAILHTICLSDRT 276 (323)
Q Consensus 264 ~~~L~~L~~~~~~ 276 (323)
+++|.+|+...+.
T Consensus 233 ~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 233 QRALENIKSGGWL 245 (252)
T ss_dssp HHHHHHHHHTCBC
T ss_pred HHHHHHHHcCCCc
Confidence 9999999987754
No 18
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.96 E-value=2.1e-26 Score=220.68 Aligned_cols=280 Identities=15% Similarity=0.148 Sum_probs=244.2
Q ss_pred hhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640 29 DRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 107 (323)
Q Consensus 29 ~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls 107 (323)
..|+++.|+.+|. ++..++..|+++|.+++..++.++..+.+ .|+++.|+.+|.. +.++.++..++++|.+|+
T Consensus 158 ~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~-~g~l~~Ll~lL~~-----~~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 158 DHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLA-NGALLPLLAQLNE-----HTKLSMLRNATWTLSNFC 231 (528)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHH-TTCHHHHHHTCCT-----TCCHHHHHHHHHHHHHHH
T ss_pred hCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHH-CCcHHHHHHHHhc-----CCCHHHHHHHHHHHHHHH
Confidence 3479999999996 67889999999999999888888999999 9999999999953 568999999999999999
Q ss_pred cccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCch-hhhhccCChHHHHHHhhhcCHhHHHHHHHHH
Q 020640 108 IHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNK-EVIGKSGALKPLIDLLDEGHQSAMKDVASAI 186 (323)
Q Consensus 108 ~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL 186 (323)
........... .|+++.|+.++.+++++++..++++|.+|+...+.+ ..+.+.|+++.|+.+|.++++.++..|+++|
T Consensus 232 ~~~~~~~~~~~-~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L 310 (528)
T 4b8j_A 232 RGKPQPSFEQT-RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTV 310 (528)
T ss_dssp CSSSCCCHHHH-TTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred cCCCCCcHHHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHH
Confidence 87654443444 357999999999999999999999999999776554 5667789999999999999999999999999
Q ss_pred HHhccCCc-hhHHHHhhCchHHHHHHhhcC---chHHHHHHHHHHHhc-CHHHHHHHHhcCCHHHHHHHHhccCChhHHH
Q 020640 187 FNLCITHE-NKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKE 261 (323)
Q Consensus 187 ~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~ 261 (323)
+||+.+++ ....+++.|+++.|+.+|.++ .++..|+++|.|++. .++....+++.|+++.|+.++.+++ +.++.
T Consensus 311 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~v~~ 389 (528)
T 4b8j_A 311 GNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAE-FDIKK 389 (528)
T ss_dssp HHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSC-HHHHH
T ss_pred HHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCC-HHHHH
Confidence 99998664 556678889999999999866 578999999999998 4677788899999999999999765 89999
Q ss_pred HHHHHHHHhccc-ChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 020640 262 NCIAILHTICLS-DRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 317 (323)
Q Consensus 262 ~a~~~L~~L~~~-~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 317 (323)
.|+++|.+++.. +++....+ .+.|+++.|+.++.++++.++..|.++|.+|....
T Consensus 390 ~a~~aL~nl~~~~~~~~~~~l-~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 390 EAAWAISNATSGGSHDQIKYL-VSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVG 445 (528)
T ss_dssp HHHHHHHHHHHHSCHHHHHHH-HHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHH-HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999997 45544444 46899999999999999999999999999998754
No 19
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.96 E-value=1.3e-26 Score=222.33 Aligned_cols=279 Identities=14% Similarity=0.093 Sum_probs=246.2
Q ss_pred hhhhHHHHHHHHhc-C-CchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHH
Q 020640 28 ADRDHFLSLLKKMS-A-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN 105 (323)
Q Consensus 28 ~~~~~i~~Lv~~l~-~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ 105 (323)
...|.++.|+++|. + ++.++..|+++|.+++..+++.+..+.+ .|+++.|+.+|+ ++++.++..|+++|.+
T Consensus 127 ~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~-~g~i~~Lv~lL~------~~~~~vr~~A~~aL~~ 199 (530)
T 1wa5_B 127 IQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVD-ADAVPLFIQLLY------TGSVEVKEQAIWALGN 199 (530)
T ss_dssp HHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTCHHHHHHHHH------HCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHH-CCCHHHHHHHHc------CCCHHHHHHHHHHHHH
Confidence 34589999999996 3 6889999999999999888888889999 999999999999 6689999999999999
Q ss_pred hccccc-hhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-CchhhhhccCChHHHHHHhhhcCHhHHHHHH
Q 020640 106 LSIHDN-NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSAMKDVA 183 (323)
Q Consensus 106 ls~~~~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al 183 (323)
++.+.+ ++..+... |+++.|+.++.+.+..++..++++|.+|+.+. +........++++.|+.++.++++.++..++
T Consensus 200 l~~~~~~~~~~~~~~-~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~ 278 (530)
T 1wa5_B 200 VAGDSTDYRDYVLQC-NAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDAC 278 (530)
T ss_dssp HHTTCHHHHHHHHHT-TCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHH
T ss_pred HhCCCccchHHHHHc-CcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHH
Confidence 998754 67777775 57999999999999999999999999999765 4555556689999999999999999999999
Q ss_pred HHHHHhccCCc-hhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhccCChhH
Q 020640 184 SAIFNLCITHE-NKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRN 259 (323)
Q Consensus 184 ~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~ 259 (323)
++|.+|+...+ ....+++.|+++.|+.+|.++ .++..|+++|.+++.. +.....+++.|+++.|+.++.+++ ..+
T Consensus 279 ~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v 357 (530)
T 1wa5_B 279 WAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPK-ENI 357 (530)
T ss_dssp HHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHH
T ss_pred HHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCC-HHH
Confidence 99999998764 566677889999999999876 5789999999999985 677778889999999999999764 899
Q ss_pred HHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640 260 KENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 316 (323)
Q Consensus 260 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 316 (323)
+..|+++|.+++...+.....++ +.++++.|+.++.++++.++..|+++|.+++..
T Consensus 358 r~~A~~aL~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 358 KKEACWTISNITAGNTEQIQAVI-DANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHH-HTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH-HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 99999999999988776555555 689999999999999999999999999999864
No 20
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.96 E-value=5.3e-26 Score=212.83 Aligned_cols=280 Identities=14% Similarity=0.103 Sum_probs=243.5
Q ss_pred hhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640 29 DRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 107 (323)
Q Consensus 29 ~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls 107 (323)
..+.++.|+++++ +++.+|..|+.+|.+++..++.++..+.+ .|+++.|+++|.. +.++.++..++.+|.+++
T Consensus 105 ~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~~l~~-----~~~~~v~~~a~~~L~~l~ 178 (450)
T 2jdq_A 105 QAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLD-CNILPPLLQLFSK-----QNRLTMTRNAVWALSNLC 178 (450)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHHTTS-----CCCHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHH-CCCHHHHHHHhcC-----CCCHHHHHHHHHHHHHHh
Confidence 3589999999996 66889999999999999888888999999 9999999999983 357999999999999999
Q ss_pred ccc-c-hhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-CchhhhhccCChHHHHHHhhhcCHhHHHHHHH
Q 020640 108 IHD-N-NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSAMKDVAS 184 (323)
Q Consensus 108 ~~~-~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~ 184 (323)
... . .+..+. .++++.|+.+++++++.++..++++|.+|+... +....+...|+++.|++++.++++.++..+++
T Consensus 179 ~~~~~~~~~~~~--~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~ 256 (450)
T 2jdq_A 179 RGKSPPPEFAKV--SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALR 256 (450)
T ss_dssp CCSSSCCCGGGT--GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHH
T ss_pred CCCCCCCCHHHH--HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHH
Confidence 765 2 333444 347999999999999999999999999999754 45667777899999999999999999999999
Q ss_pred HHHHhccCCch-hHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc-CHHHHHHHHhcCCHHHHHHHHhccCChhHH
Q 020640 185 AIFNLCITHEN-KARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNK 260 (323)
Q Consensus 185 aL~~L~~~~~~-~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~ 260 (323)
+|.+++.+++. ...+++.|+++.|+.++.++ .++..++++|.+++. +++....+++.|+++.|+.++++++ +.++
T Consensus 257 ~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~-~~v~ 335 (450)
T 2jdq_A 257 AVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAE-FRTR 335 (450)
T ss_dssp HHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSC-HHHH
T ss_pred HHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC-HHHH
Confidence 99999998765 44567789999999999976 689999999999997 5778888899999999999999765 9999
Q ss_pred HHHHHHHHHhccc-ChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchh
Q 020640 261 ENCIAILHTICLS-DRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVN 318 (323)
Q Consensus 261 ~~a~~~L~~L~~~-~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 318 (323)
..|+++|.+++.. +++..+.++ +.++++.|++++.++++++++.|.++|.++....+
T Consensus 336 ~~a~~~L~~l~~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 336 KEAAWAITNATSGGSAEQIKYLV-ELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGE 393 (450)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHH-HHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-HCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch
Confidence 9999999999986 455455555 67999999999999999999999999999987543
No 21
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=3.9e-27 Score=204.11 Aligned_cols=233 Identities=14% Similarity=0.237 Sum_probs=209.2
Q ss_pred hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640 31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 109 (323)
Q Consensus 31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~ 109 (323)
...+.++++|+ ++++++..|+.+|.++...+++++..+.+ .|+++.|+++|+ ++++.++..|+.+|.+++..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~-~g~i~~L~~lL~------~~~~~v~~~a~~~L~~l~~~ 84 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVID-AGALPALVQLLS------SPNEQILQEALWALSNIASG 84 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHH-TTHHHHHHHGGG------CSCHHHHHHHHHHHHHHTTS
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHH-cCcHHHHHHHHc------CCCHHHHHHHHHHHHHHhcC
Confidence 46888999995 77899999999998766667778889999 999999999999 66799999999999999984
Q ss_pred -cchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCch-hhhhccCChHHHHHHhhhcCHhHHHHHHHHHH
Q 020640 110 -DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNK-EVIGKSGALKPLIDLLDEGHQSAMKDVASAIF 187 (323)
Q Consensus 110 -~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~ 187 (323)
++++..+.+.| .++.|+.++++++++++..++++|.+|+..++++ ..+.+.|+++.|+++|.+++..++..++++|+
T Consensus 85 ~~~~~~~i~~~g-~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~ 163 (252)
T 4db8_A 85 GNEQIQAVIDAG-ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 163 (252)
T ss_dssp CHHHHHHHHHTT-HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcC-CHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 55788888865 6999999999999999999999999999988887 88888999999999999999999999999999
Q ss_pred HhccCC-chhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc-CHHHHHHHHhcCCHHHHHHHHhccCChhHHHHH
Q 020640 188 NLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENC 263 (323)
Q Consensus 188 ~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a 263 (323)
+|+..+ +.+..+++.|+++.|+.+++++ .++..++++|.+++. +++.+..+.+.|+++.|+.++++++ +.+++.|
T Consensus 164 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~A 242 (252)
T 4db8_A 164 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN-EKIQKEA 242 (252)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSS-SHHHHTH
T ss_pred HHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCC-HHHHHHH
Confidence 999876 4566678889999999999976 689999999999996 5788889999999999999999765 8999999
Q ss_pred HHHHHHhcc
Q 020640 264 IAILHTICL 272 (323)
Q Consensus 264 ~~~L~~L~~ 272 (323)
+++|.+|+.
T Consensus 243 ~~~L~~l~~ 251 (252)
T 4db8_A 243 QEALEKLQS 251 (252)
T ss_dssp HHHHHTTC-
T ss_pred HHHHHHHhc
Confidence 999999985
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.95 E-value=5.2e-26 Score=218.11 Aligned_cols=279 Identities=13% Similarity=0.125 Sum_probs=243.1
Q ss_pred hhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc
Q 020640 30 RDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 108 (323)
Q Consensus 30 ~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~ 108 (323)
.|+++.|+++|. .++.++..|+++|.+++..++.++..+.. .|+++.|+.+|. +.++.++..|+++|.+|+.
T Consensus 172 ~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~-~~~l~~L~~ll~------~~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 172 ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQ-CNAMEPILGLFN------SNKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp TTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHGGG------SCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHH-cCcHHHHHHHhc------cCCHHHHHHHHHHHHHHhC
Confidence 578999999996 67899999999999999888889999999 999999999999 6689999999999999997
Q ss_pred cc-chhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-CchhhhhccCChHHHHHHhhhcCHhHHHHHHHHH
Q 020640 109 HD-NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAI 186 (323)
Q Consensus 109 ~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL 186 (323)
.. ......... ++++.|+.++.++++.++..++++|.+|+... +....+.+.|+++.|+.+|.+++..++..|+++|
T Consensus 245 ~~~~~~~~~~~~-~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L 323 (530)
T 1wa5_B 245 GKKPQPDWSVVS-QALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAV 323 (530)
T ss_dssp CSSSCCCHHHHG-GGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred CCCCCCcHHHHH-hHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHH
Confidence 76 344444443 47999999999999999999999999999764 4466677789999999999999999999999999
Q ss_pred HHhccCCc-hhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc-CHHHHHHHHhcCCHHHHHHHHhccCChhHHHH
Q 020640 187 FNLCITHE-NKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKEN 262 (323)
Q Consensus 187 ~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 262 (323)
.+++.+++ ....+++.|+++.|+.+|.++ .++..|+++|.+++. +++....+++.|+++.|+.++.+++ +.++..
T Consensus 324 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~ 402 (530)
T 1wa5_B 324 GNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAE-YKTKKE 402 (530)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSC-HHHHHH
T ss_pred HHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC-HHHHHH
Confidence 99998764 455567789999999999987 689999999999997 5777788889999999999999765 999999
Q ss_pred HHHHHHHhcccC-h--HhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchh
Q 020640 263 CIAILHTICLSD-R--TKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVN 318 (323)
Q Consensus 263 a~~~L~~L~~~~-~--~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 318 (323)
|+++|.+++... + .....++ +.|+++.|+.++.+.++.++..|.++|.++....+
T Consensus 403 a~~aL~~l~~~~~~~~~~~~~l~-~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~ 460 (530)
T 1wa5_B 403 ACWAISNASSGGLQRPDIIRYLV-SQGCIKPLCDLLEIADNRIIEVTLDALENILKMGE 460 (530)
T ss_dssp HHHHHHHHHHHTTTCTHHHHHHH-HTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcHHHHHHHH-HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 999999999863 2 3444554 68999999999999999999999999999987543
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.95 E-value=1.2e-25 Score=210.49 Aligned_cols=275 Identities=15% Similarity=0.150 Sum_probs=240.2
Q ss_pred hHHHHHHHHhc-C-CchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc
Q 020640 31 DHFLSLLKKMS-A-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 108 (323)
Q Consensus 31 ~~i~~Lv~~l~-~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~ 108 (323)
+.++.|++.++ + ++.+|..|+.+|.+++..+++++..+.+ .|+++.|+++|+ ++++.++..|+.+|.+++.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~lL~------~~~~~vr~~a~~~L~~l~~ 136 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQ-AGAVPIFIELLS------SEFEDVQEQAVWALGNIAG 136 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTHHHHHHHHTT------CSCHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHh-CCCHHHHHHHHc------CCCHHHHHHHHHHHHHHcc
Confidence 79999999996 4 6889999999999999877888888888 999999999999 7789999999999999998
Q ss_pred ccc-hhhhhhccCCcHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCC--CchhhhhccCChHHHHHHhhhcCHhHHHHHHH
Q 020640 109 HDN-NKKLVAETPMVIPLLMDALRS-GTIETRSNAAAALFTLSALD--SNKEVIGKSGALKPLIDLLDEGHQSAMKDVAS 184 (323)
Q Consensus 109 ~~~-~~~~i~~~~g~i~~Lv~ll~~-~~~~~~~~a~~~L~~L~~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~ 184 (323)
+.. .+..+.+.+ +++.|+.++++ .+..++..++++|.+++... ..+..++ .++++.|++++.++++.++..+++
T Consensus 137 ~~~~~~~~~~~~~-~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~ 214 (450)
T 2jdq_A 137 DSTMCRDYVLDCN-ILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACW 214 (450)
T ss_dssp TCHHHHHHHHHTT-CHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHCC-CHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHH
Confidence 764 677777754 79999999996 68999999999999999654 3333333 789999999999999999999999
Q ss_pred HHHHhccCC-chhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhccCChhHH
Q 020640 185 AIFNLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNK 260 (323)
Q Consensus 185 aL~~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~ 260 (323)
+|.+|+... +.+..+.+.|+++.|+.++.++ .++..++++|.+++.. +..+..+.+.|+++.|+.++.+++ +.++
T Consensus 215 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~vr 293 (450)
T 2jdq_A 215 ALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPK-ESIK 293 (450)
T ss_dssp HHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSS-HHHH
T ss_pred HHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCC-HHHH
Confidence 999999876 5566677889999999999876 6799999999999986 566677888899999999999754 8999
Q ss_pred HHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640 261 ENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 316 (323)
Q Consensus 261 ~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 316 (323)
..|+++|.+++...+.....++ +.++++.|++++.++++.++..|+++|.+++..
T Consensus 294 ~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 294 KEACWTISNITAGNRAQIQTVI-DANIFPALISILQTAEFRTRKEAAWAITNATSG 348 (450)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHH-HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 9999999999987766555554 579999999999999999999999999999863
No 24
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=5.2e-27 Score=203.38 Aligned_cols=236 Identities=15% Similarity=0.254 Sum_probs=209.9
Q ss_pred cCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHH-hccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 020640 72 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLN-LSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSA 150 (323)
Q Consensus 72 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~-ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~ 150 (323)
....+.++..|+ +++++++..|+..|.+ ++..++++..+.+.+ +++.|+.+|++++++++..++++|.+++.
T Consensus 11 ~~~~~~~~~~L~------s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g-~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 83 (252)
T 4db8_A 11 GSELPQMTQQLN------SDDMQEQLSATRKFSQILSDGNEQIQAVIDAG-ALPALVQLLSSPNEQILQEALWALSNIAS 83 (252)
T ss_dssp TCSHHHHHHHHH------SSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHc------CCCHHHHHHHHHHHHHHHcCCCchHHHHHHcC-cHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 456899999999 7889999999999976 444555788888864 79999999999999999999999999997
Q ss_pred -CCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchh-HHHHhhCchHHHHHHhhcC--chHHHHHHHHH
Q 020640 151 -LDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENK-ARAVRDGGVSVILKKIMDG--VHVDELLAILA 226 (323)
Q Consensus 151 -~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~-~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~ 226 (323)
.++++..+.+.|+++.|+++|+++++.++..|+++|+||+.+++.+ ..+.+.|+++.|+.+|+++ .++..++++|.
T Consensus 84 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~ 163 (252)
T 4db8_A 84 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 163 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 5678889999999999999999999999999999999999999888 7788899999999999877 67999999999
Q ss_pred HHhc-CHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHH
Q 020640 227 MLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRK 305 (323)
Q Consensus 227 ~l~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~ 305 (323)
+++. .++.+..+.+.|+++.|+.++++++ +.++..|+++|.+++..+++.. ..+.+.|+++.|+++++++++++++.
T Consensus 164 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~-~~~~~~g~i~~L~~ll~~~~~~v~~~ 241 (252)
T 4db8_A 164 NIASGGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQK-QAVKEAGALEKLEQLQSHENEKIQKE 241 (252)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHGGGCSS-HHHHHHHHHHHHHHTTSCHHHH-HHHHHTTHHHHHHTTTTCSSSHHHHT
T ss_pred HHHcCChHHHHHHHHCCCHHHHHHHHCCCC-HHHHHHHHHHHHHHhcCCHHHH-HHHHHCCcHHHHHHHhCCCCHHHHHH
Confidence 9998 4678888899999999999999664 9999999999999998877644 44457899999999999999999999
Q ss_pred HHHHHHHHhcc
Q 020640 306 ATGILERLKRT 316 (323)
Q Consensus 306 A~~~L~~l~~~ 316 (323)
|.++|.+|+.+
T Consensus 242 A~~~L~~l~~~ 252 (252)
T 4db8_A 242 AQEALEKLQSH 252 (252)
T ss_dssp HHHHHHTTC--
T ss_pred HHHHHHHHhcC
Confidence 99999999753
No 25
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.95 E-value=8.4e-27 Score=222.80 Aligned_cols=279 Identities=19% Similarity=0.183 Sum_probs=243.1
Q ss_pred hhhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHH
Q 020640 27 EADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN 105 (323)
Q Consensus 27 ~~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ 105 (323)
....|.++.|+++|+ +++.+|..|+..|.+++. ++.++..+....|+++.|+++|.. +++++++..++.+|.+
T Consensus 13 ~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~-~~~~~~~~~~~~~~i~~Lv~~L~~-----~~~~~~~~~a~~~L~~ 86 (529)
T 1jdh_A 13 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK-KEASRHAIMRSPQMVSAIVRTMQN-----TNDVETARCTAGTLHN 86 (529)
T ss_dssp ----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHT-SHHHHHHHHTCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHH
T ss_pred hhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHc-CCccHHHHHhCcchHHHHHHHHhc-----CCCHHHHHHHHHHHHH
Confidence 355689999999996 778999999999999996 455776666525899999999974 4478999999999999
Q ss_pred hccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CCchhhhhccCChHHHHHHhhhcCHhHHHHHHH
Q 020640 106 LSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL-DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVAS 184 (323)
Q Consensus 106 ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~ 184 (323)
++..++++..+.+. |.++.|+.+++++++.++..++++|.+++.+ ++.+..+.+.|+++.|++++.+++..++..++.
T Consensus 87 ls~~~~~~~~i~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~ 165 (529)
T 1jdh_A 87 LSHHREGLLAIFKS-GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD 165 (529)
T ss_dssp HTTSHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHH
T ss_pred HHcCchhHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHH
Confidence 99998899999987 4799999999999999999999999999976 456777778999999999999999999999999
Q ss_pred HHHHhccCC-chhHHHHhhCchHHHHHHhhcC---chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHH
Q 020640 185 AIFNLCITH-ENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNK 260 (323)
Q Consensus 185 aL~~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~ 260 (323)
+|++++..+ +++..+.+.|+++.|+.+++++ ..++.++.+|.+++.+++++..+++.|+++.|+.++++++ +.++
T Consensus 166 ~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~-~~~~ 244 (529)
T 1jdh_A 166 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS-QRLV 244 (529)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSC-HHHH
T ss_pred HHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCC-hHHH
Confidence 999999864 6788888899999999999976 4577889999999999999999999999999999999764 8999
Q ss_pred HHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 020640 261 ENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 317 (323)
Q Consensus 261 ~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 317 (323)
+.++++|.+|+...+.. .. ..++++.|++++.++++.++..|+++|.+|+...
T Consensus 245 ~~a~~~L~~l~~~~~~~--~~--~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 297 (529)
T 1jdh_A 245 QNCLWTLRNLSDAATKQ--EG--MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 297 (529)
T ss_dssp HHHHHHHHHHHTTCTTC--SC--CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhcCChhh--HH--HHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 99999999999876431 12 3489999999999999999999999999998753
No 26
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.95 E-value=2.3e-26 Score=225.60 Aligned_cols=279 Identities=19% Similarity=0.186 Sum_probs=244.6
Q ss_pred hhhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHH
Q 020640 27 EADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN 105 (323)
Q Consensus 27 ~~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ 105 (323)
....|.++.|+++|+ +++.+|..|+.+|.+++.++ .++..+....|+++.|+++|.. +++++++..|+.+|.+
T Consensus 10 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~-----~~~~~~~~~A~~~L~~ 83 (644)
T 2z6h_A 10 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQN-----TNDVETARCTAGTLHN 83 (644)
T ss_dssp --CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHS-----CCCHHHHHHHHHHHHH
T ss_pred hhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhc-----CCCHHHHHHHHHHHHH
Confidence 356689999999996 77899999999999999755 4677776525899999999983 3479999999999999
Q ss_pred hccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-CchhhhhccCChHHHHHHhhhcCHhHHHHHHH
Q 020640 106 LSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSAMKDVAS 184 (323)
Q Consensus 106 ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~ 184 (323)
|+..++++..+.+. |+++.|+.+|+++++.++..++++|.+|+... +.+..+.+.|+++.|+++|++++..++..++.
T Consensus 84 Ls~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~ 162 (644)
T 2z6h_A 84 LSHHREGLLAIFKS-GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD 162 (644)
T ss_dssp HTTSHHHHHHHHTT-THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHH
T ss_pred HhcChhhHHHHHHc-CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHH
Confidence 99998899999987 57999999999999999999999999998764 55677778999999999999999989999999
Q ss_pred HHHHhcc-CCchhHHHHhhCchHHHHHHhhcC---chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHH
Q 020640 185 AIFNLCI-THENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNK 260 (323)
Q Consensus 185 aL~~L~~-~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~ 260 (323)
+|++|+. +++++..+.+.|+++.|+++++++ ..++.++.+|.+++.+++++..+++.|+++.|+.+++.++ ..++
T Consensus 163 ~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~-~~~~ 241 (644)
T 2z6h_A 163 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS-QRLV 241 (644)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSC-HHHH
T ss_pred HHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCC-HHHH
Confidence 9999997 457888899999999999999976 4678899999999999999999999999999999999764 9999
Q ss_pred HHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 020640 261 ENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 317 (323)
Q Consensus 261 ~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 317 (323)
+.++++|.+|+...+.. .. ..++++.|++++.++++++++.|+++|.+|+...
T Consensus 242 ~~a~~~L~nL~~~~~~~--~~--~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~ 294 (644)
T 2z6h_A 242 QNCLWTLRNLSDAATKQ--EG--MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 294 (644)
T ss_dssp HHHHHHHHHHGGGCTTC--CS--CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhcchhh--hh--hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999876431 22 2489999999999999999999999999998753
No 27
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.95 E-value=1.4e-25 Score=214.30 Aligned_cols=280 Identities=15% Similarity=0.118 Sum_probs=242.0
Q ss_pred hhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640 28 ADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 106 (323)
Q Consensus 28 ~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l 106 (323)
.+.|.++.|+++++ +++.++..|+.+|.+++.+++..+..+.+ .|+++.|+++|+ +++++++..++.+|.++
T Consensus 98 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~ll~------~~~~~~~~~~~~~L~~l 170 (529)
T 1jdh_A 98 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLN------KTNVKFLAITTDCLQIL 170 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHH-HTHHHHHHHGGG------CCCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHH-cCCHHHHHHHHh------cCCHHHHHHHHHHHHHH
Confidence 45589999999996 66889999999999999887788888989 999999999999 67889999999999999
Q ss_pred ccc-cchhhhhhccCCcHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHH
Q 020640 107 SIH-DNNKKLVAETPMVIPLLMDALRSG-TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVAS 184 (323)
Q Consensus 107 s~~-~~~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~ 184 (323)
+.. ++++..+.+.+ .++.|+.+++++ ....++.++.+|++|+..++++..+.+.|+++.|++++.+++..++..+++
T Consensus 171 a~~~~~~~~~i~~~~-~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~ 249 (529)
T 1jdh_A 171 AYGNQESKLIILASG-GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW 249 (529)
T ss_dssp HTTCHHHHHHHHHTT-HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHH
T ss_pred HhCCHHHHHHHHHCC-CHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHH
Confidence 985 45788888865 699999999876 467778899999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhccC-ChhHH
Q 020640 185 AIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIREST-CDRNK 260 (323)
Q Consensus 185 aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~~-~~~~~ 260 (323)
+|.+|+....... ...|+++.|++++.++ .++..++++|.+++.+ ++++..+.+.|+++.|++++...+ ++.++
T Consensus 250 ~L~~l~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~ 327 (529)
T 1jdh_A 250 TLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 327 (529)
T ss_dssp HHHHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHH
Confidence 9999998764322 2247899999999876 6899999999999995 689999999999999999998633 37899
Q ss_pred HHHHHHHHHhcccChH--hHHHHHhhcccHHHHHHHhhcCC-HHHHHHHHHHHHHHhcch
Q 020640 261 ENCIAILHTICLSDRT--KWKAMREEESTHGTISKLAQDGT-ARAKRKATGILERLKRTV 317 (323)
Q Consensus 261 ~~a~~~L~~L~~~~~~--~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~A~~~L~~l~~~~ 317 (323)
+.|+.+|.+|+.+++. ..+..+.+.|+++.|++++++++ +.+++.|+++|.+++...
T Consensus 328 ~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~ 387 (529)
T 1jdh_A 328 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 387 (529)
T ss_dssp HHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcCh
Confidence 9999999999987543 23445557899999999999886 699999999999998643
No 28
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.94 E-value=3.9e-25 Score=216.94 Aligned_cols=280 Identities=15% Similarity=0.120 Sum_probs=241.5
Q ss_pred hhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640 28 ADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 106 (323)
Q Consensus 28 ~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l 106 (323)
.+.|.++.|+++++ +++.++..|+.+|.+++..++..+..+.+ .|+++.|+++|+ ++++.++..++.+|.++
T Consensus 95 ~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~-~g~i~~Lv~lL~------~~~~~~~~~a~~~L~~L 167 (644)
T 2z6h_A 95 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLN------KTNVKFLAITTDCLQIL 167 (644)
T ss_dssp HTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHH-TTHHHHHHHGGG------CCCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHH-CCChHHHHHHHC------cCCHHHHHHHHHHHHHH
Confidence 35589999999996 66889999999999999887778888888 999999999999 66788899999999999
Q ss_pred cc-ccchhhhhhccCCcHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHH
Q 020640 107 SI-HDNNKKLVAETPMVIPLLMDALRSG-TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVAS 184 (323)
Q Consensus 107 s~-~~~~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~ 184 (323)
+. .++++..+.+.+ .++.|+.++++. ....++.++.+|++|+..++++..+++.|+++.|++++.+++..++..+++
T Consensus 168 a~~~~~~~~~i~~~g-~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~ 246 (644)
T 2z6h_A 168 AYGNQESKLIILASG-GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW 246 (644)
T ss_dssp HTTCHHHHHHHHHTT-HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHH
T ss_pred HhcCcHHHHHHHHcC-ChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 97 455888888865 699999999876 467889999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhccCC-hhHH
Q 020640 185 AIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTC-DRNK 260 (323)
Q Consensus 185 aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~-~~~~ 260 (323)
+|.||+...... ....|+++.|+.++.++ .+++.++++|.+|+.. ++++..+++.|+++.|+.++.+.++ +.++
T Consensus 247 ~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~ 324 (644)
T 2z6h_A 247 TLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 324 (644)
T ss_dssp HHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHH
Confidence 999999865432 12237899999999876 6899999999999995 6889999999999999999986432 6899
Q ss_pred HHHHHHHHHhcccChH--hHHHHHhhcccHHHHHHHhhcCC-HHHHHHHHHHHHHHhcch
Q 020640 261 ENCIAILHTICLSDRT--KWKAMREEESTHGTISKLAQDGT-ARAKRKATGILERLKRTV 317 (323)
Q Consensus 261 ~~a~~~L~~L~~~~~~--~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~A~~~L~~l~~~~ 317 (323)
+.|+++|.+|+...++ ..+..+.+.++++.|++++.+++ +.+++.|+++|.||+...
T Consensus 325 ~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~ 384 (644)
T 2z6h_A 325 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 384 (644)
T ss_dssp HHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCH
Confidence 9999999999986542 23444556899999999999874 799999999999998643
No 29
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.93 E-value=9.5e-25 Score=218.22 Aligned_cols=276 Identities=18% Similarity=0.192 Sum_probs=242.1
Q ss_pred hhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc
Q 020640 30 RDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 108 (323)
Q Consensus 30 ~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~ 108 (323)
.+.++.|+++|. +++.+|..|+.+|.+++.. ..++..+.+..|+++.|+++|+. +++++++..|+.+|.+|+.
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~-~~~~~~i~~~~~~i~~Lv~~L~~-----~~d~~vr~~Aa~aL~~Ls~ 222 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQN-----TNDVETARCTSGTLHNLSH 222 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTS-HHHHHHHTTCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCC-ChhHHHHHhccChHHHHHHHHcC-----CCCHHHHHHHHHHHHHHhC
Confidence 678999999996 6788999999999999964 55677777525899999999984 4489999999999999999
Q ss_pred ccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-CchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHH
Q 020640 109 HDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIF 187 (323)
Q Consensus 109 ~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~ 187 (323)
..+++..+.+. |+++.|+.+|+++++.++..|+++|.+|+... +.+..+.+.|+++.|+++|.+++..++..++.+|+
T Consensus 223 ~~~~~~~i~~~-g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~ 301 (780)
T 2z6g_A 223 HREGLLAIFKS-GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 301 (780)
T ss_dssp SHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHH
T ss_pred CchhHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 88888888886 57999999999999999999999999999764 55666677999999999999999999999999999
Q ss_pred HhccCC-chhHHHHhhCchHHHHHHhhcC---chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHH
Q 020640 188 NLCITH-ENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENC 263 (323)
Q Consensus 188 ~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a 263 (323)
+|+..+ +++..+++.|+++.|+.+++++ ..++.++.+|.+++.+++++..+++.|+++.|+.++.+++ ..+++.|
T Consensus 302 ~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~-~~~~~~a 380 (780)
T 2z6g_A 302 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS-QRLVQNC 380 (780)
T ss_dssp HHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSC-HHHHHHH
T ss_pred HHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCc-hHHHHHH
Confidence 999754 7888888999999999999976 3567889999999999999999999999999999999664 8899999
Q ss_pred HHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 020640 264 IAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 317 (323)
Q Consensus 264 ~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 317 (323)
+++|.+|+...+.. . ...++++.|++++.+.++.++..|+++|.+|+...
T Consensus 381 ~~~L~~L~~~~~~~--~--~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~ 430 (780)
T 2z6g_A 381 LWTLRNLSDAATKQ--E--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 430 (780)
T ss_dssp HHHHHHHHTTCTTC--S--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHhccchhh--h--hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 99999999876431 1 23578999999999999999999999999998753
No 30
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.93 E-value=2.1e-25 Score=189.93 Aligned_cols=193 Identities=17% Similarity=0.236 Sum_probs=169.1
Q ss_pred CCHHHHHHhhcccccCCCCCH--HHHHHHHHHHHHhcccc-chhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 020640 73 DAIPQLLSPLSESKCENGINP--NLQEDVITTLLNLSIHD-NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLS 149 (323)
Q Consensus 73 g~i~~Lv~lL~~~~~~~~~~~--~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~ 149 (323)
-.+|.|+++|+ ++++ +++..|+..|.+++..+ +++..+.+.| .+|.|+.+|+++++++++.|+++|.||+
T Consensus 8 ~~i~~lV~lL~------s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G-~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa 80 (233)
T 3tt9_A 8 MTLERAVSMLE------ADHMLPSRISAAATFIQHECFQKSEARKRVNQLR-GILKLLQLLKVQNEDVQRAVCGALRNLV 80 (233)
T ss_dssp CCHHHHHHTCC------SSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTT-HHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHhC------CCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcC-CHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 36899999999 5555 89999999999999754 4888898876 5999999999999999999999999999
Q ss_pred C-CCCchhhhhccCChHHHHHHhhh-cCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhh--------------
Q 020640 150 A-LDSNKEVIGKSGALKPLIDLLDE-GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIM-------------- 213 (323)
Q Consensus 150 ~-~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~-------------- 213 (323)
. +++++..+++.|+|++|+++|++ ++.++++.+..+||||+..+++|..+++. ++++|+.++.
T Consensus 81 ~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~ 159 (233)
T 3tt9_A 81 FEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKA 159 (233)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCC
T ss_pred hCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccc
Confidence 7 57899999999999999999985 68999999999999999999999999875 7999988653
Q ss_pred ----cCchHHHHHHHHHHHhc-CHHHHHHHHhc-CCHHHHHHHHhcc-----CChhHHHHHHHHHHHhccc
Q 020640 214 ----DGVHVDELLAILAMLST-NHRAVEEIGDL-GGVSCMLRIIRES-----TCDRNKENCIAILHTICLS 273 (323)
Q Consensus 214 ----~~~~~~~a~~~L~~l~~-~~~~~~~i~~~-g~i~~Lv~ll~~~-----~~~~~~~~a~~~L~~L~~~ 273 (323)
+..++++|.++|+||+. +++.|+.|.+. |+|+.|+.+++.+ .+++.+++|+++|+||++.
T Consensus 160 ~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 160 NGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred cccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 11568999999999998 67999999986 6789999999863 2468999999999999985
No 31
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.4e-24 Score=208.96 Aligned_cols=285 Identities=12% Similarity=0.096 Sum_probs=235.1
Q ss_pred hhhhHHHHHHHHhc--CCchhHHHHHHHHHHHhccChh--------------------------------------hHHH
Q 020640 28 ADRDHFLSLLKKMS--ATLPDQTEAAKELRLLTKRMPS--------------------------------------FRAL 67 (323)
Q Consensus 28 ~~~~~i~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~--------------------------------------~~~~ 67 (323)
.+.+.++.|+++++ ++......++.+|.|++...+. ++..
T Consensus 373 ~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~ 452 (778)
T 3opb_A 373 SNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKY 452 (778)
T ss_dssp HCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHH
Confidence 56788999999996 4577888999999999974331 4567
Q ss_pred HhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHH---HHHHHHHH
Q 020640 68 FGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIE---TRSNAAAA 144 (323)
Q Consensus 68 i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~---~~~~a~~~ 144 (323)
+.+ .|+++.|+.+++ ++++.+++.|+++|.|++.+.++|..+++.| +++.|+.++.+.+.. .+..|+.+
T Consensus 453 l~e-aGvIp~Lv~Ll~------S~s~~~re~A~~aL~nLS~d~~~R~~lvqqG-al~~LL~lL~s~~~~~~~~k~~AA~A 524 (778)
T 3opb_A 453 ILR-TELISFLKREMH------NLSPNCKQQVVRIIYNITRSKNFIPQLAQQG-AVKIILEYLANKQDIGEPIRILGCRA 524 (778)
T ss_dssp TTT-TTHHHHHHHHGG------GSCHHHHHHHHHHHHHHHTSGGGHHHHHHTT-HHHHHHHHTTCC---CCHHHHHHHHH
T ss_pred HHH-CcCHHHHHHHHc------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHCC-CHHHHHHHHhcCCCcchHHHHHHHHH
Confidence 788 999999999999 6789999999999999999999999999975 699999999887654 89999999
Q ss_pred HHHhcCCCCchhhhh--c-cCChHHHHHHhhh--cCH------------hHHHHHHHHHHHhccCCc-----hhHHHHhh
Q 020640 145 LFTLSALDSNKEVIG--K-SGALKPLIDLLDE--GHQ------------SAMKDVASAIFNLCITHE-----NKARAVRD 202 (323)
Q Consensus 145 L~~L~~~~~~~~~i~--~-~g~i~~Lv~lL~~--~~~------------~~~~~al~aL~~L~~~~~-----~~~~i~~~ 202 (323)
|.+++...+....+. . .|++++|+++|.. +.. .-+..|+.||.||+..++ .+..++++
T Consensus 525 LArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~ 604 (778)
T 3opb_A 525 LTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVST 604 (778)
T ss_dssp HHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHS
T ss_pred HHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHh
Confidence 999986665444432 1 4899999999983 111 127799999999999873 47888885
Q ss_pred -CchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHH-HHHHhcC------CHHHHHHHHhccCChhHHHHHHHHHHHhcc
Q 020640 203 -GGVSVILKKIMDG--VHVDELLAILAMLSTNHRAV-EEIGDLG------GVSCMLRIIRESTCDRNKENCIAILHTICL 272 (323)
Q Consensus 203 -g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~-~~i~~~g------~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~ 272 (323)
|+++.|..+|.++ .++..|+++++||+.+++.. ..+.+.+ .++.|+.++..++ .++|++|+++|.+++.
T Consensus 605 ~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D-~~~r~AAagALAnLts 683 (778)
T 3opb_A 605 KVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSD-VESQRAVAAIFANIAT 683 (778)
T ss_dssp HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCC-HHHHHHHHHHHHHhcC
Confidence 9999999999876 58999999999999998875 3554322 3889999998654 9999999999999987
Q ss_pred cChHhHHHHHhhcccHHHHHHHhhc--CCHHHHHHHHHHHHHHhcchhhcc
Q 020640 273 SDRTKWKAMREEESTHGTISKLAQD--GTARAKRKATGILERLKRTVNLTH 321 (323)
Q Consensus 273 ~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~A~~~L~~l~~~~~~~~ 321 (323)
..+..++.++...++++.|+.++++ +++.++.++..++.||..+++..+
T Consensus 684 ~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~ 734 (778)
T 3opb_A 684 TIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNG 734 (778)
T ss_dssp HCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTT
T ss_pred CChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCC
Confidence 7766667787766999999999999 899999999999999998665443
No 32
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.93 E-value=6.2e-24 Score=212.33 Aligned_cols=279 Identities=15% Similarity=0.126 Sum_probs=239.6
Q ss_pred hhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640 29 DRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 107 (323)
Q Consensus 29 ~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls 107 (323)
..|.++.|+++|+ +++.++..|+.+|.+++..+++.+..+.+ .|+++.|+++|+ +++..++..++.+|.+++
T Consensus 232 ~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~-~g~v~~Lv~lL~------~~~~~v~~~a~~aL~~La 304 (780)
T 2z6g_A 232 KSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLN------KTNVKFLAITTDCLQILA 304 (780)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHH-TTHHHHHHHGGG------CCCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHH-cCCHHHHHHHHh------cCCHHHHHHHHHHHHHHh
Confidence 4589999999996 66889999999999999887888888888 999999999999 678899999999999998
Q ss_pred cc-cchhhhhhccCCcHHHHHHHHhcCC-HHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHH
Q 020640 108 IH-DNNKKLVAETPMVIPLLMDALRSGT-IETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASA 185 (323)
Q Consensus 108 ~~-~~~~~~i~~~~g~i~~Lv~ll~~~~-~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~a 185 (323)
.. ++++..+.+.+ .++.|+.++++.+ ...++.++.+|.+|+..+.++..+++.|+++.|+.++.+++..++..++++
T Consensus 305 ~~~~e~~~~i~~~~-~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~ 383 (780)
T 2z6g_A 305 YGNQESKLIILASG-GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 383 (780)
T ss_dssp TTCHHHHHHHHTTT-HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHH
T ss_pred cCChHHHHHHHHcC-CHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHH
Confidence 75 45788888865 6999999998764 566778999999999988899999999999999999999999999999999
Q ss_pred HHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhccCC-hhHHH
Q 020640 186 IFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTC-DRNKE 261 (323)
Q Consensus 186 L~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~-~~~~~ 261 (323)
|.+|+...... ....++++.|+.+|.+. .+++.|+++|.+|+.. ++.+..+++.|+++.|++++.+.++ +.+++
T Consensus 384 L~~L~~~~~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~ 461 (780)
T 2z6g_A 384 LRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 461 (780)
T ss_dssp HHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhccchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHH
Confidence 99999866431 12246899999999876 6899999999999996 6888999999999999999986332 48999
Q ss_pred HHHHHHHHhcccChH--hHHHHHhhcccHHHHHHHhhcCC-HHHHHHHHHHHHHHhcch
Q 020640 262 NCIAILHTICLSDRT--KWKAMREEESTHGTISKLAQDGT-ARAKRKATGILERLKRTV 317 (323)
Q Consensus 262 ~a~~~L~~L~~~~~~--~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~A~~~L~~l~~~~ 317 (323)
.|+++|.+|+...++ ..+..+...++++.|++++.+++ +.+++.|+++|.||+...
T Consensus 462 ~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~ 520 (780)
T 2z6g_A 462 PAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 520 (780)
T ss_dssp HHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH
Confidence 999999999986543 12345557899999999999886 599999999999998643
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.92 E-value=9.2e-24 Score=177.90 Aligned_cols=195 Identities=15% Similarity=0.273 Sum_probs=174.2
Q ss_pred CCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCC-chhH
Q 020640 120 PMVIPLLMDALRSGTIETRSNAAAALFTLSA-LDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITH-ENKA 197 (323)
Q Consensus 120 ~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~-~~~~ 197 (323)
+|..+.|+.++++++++++..++++|.+++. .++++..+.+.|+++.|+++|.++++.++..|+++|.||+.++ +++.
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 3568999999999999999999999999994 5567888899999999999999999999999999999999755 6778
Q ss_pred HHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc-CHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccC
Q 020640 198 RAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSD 274 (323)
Q Consensus 198 ~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~ 274 (323)
.+++.|+++.|+.+|+++ .++..++++|.|++. +++.+..+++.|+++.|++++++++ +.++..|+++|.+++..+
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSC
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCC
Confidence 888999999999999987 689999999999997 5777888999999999999999764 999999999999999987
Q ss_pred hHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640 275 RTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 316 (323)
Q Consensus 275 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 316 (323)
++. +..+.+.|+++.|++++.++++.++++|.++|.+|+.+
T Consensus 170 ~~~-~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 170 NEQ-KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HHH-HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred cHH-HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 664 45555789999999999999999999999999999753
No 34
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.92 E-value=1.6e-24 Score=184.46 Aligned_cols=192 Identities=20% Similarity=0.219 Sum_probs=169.4
Q ss_pred hHHHHHHHHhc-CCc--hhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640 31 DHFLSLLKKMS-ATL--PDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 107 (323)
Q Consensus 31 ~~i~~Lv~~l~-~~~--~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls 107 (323)
..++.+|++|+ +++ +++..|+..|.+++..+++++..+.+ .|+||.|+++|+ ++++++++.|+++|.||+
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~-~G~Ip~LV~lL~------s~~~~vq~~Aa~aL~nLa 80 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQ-LRGILKLLQLLK------VQNEDVQRAVCGALRNLV 80 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH-TTHHHHHHHGGG------CCCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHH-cCCHHHHHHHHc------CCCHHHHHHHHHHHHHHH
Confidence 57999999996 556 78899999999999888999999999 999999999999 778999999999999999
Q ss_pred cc-cchhhhhhccCCcHHHHHHHHh-cCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhh---h---------
Q 020640 108 IH-DNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLD---E--------- 173 (323)
Q Consensus 108 ~~-~~~~~~i~~~~g~i~~Lv~ll~-~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~---~--------- 173 (323)
.+ ++++..|.+.| .+|.|+.+|+ +++.++++.++.+|+||+..++++..+++. ++++|++++. +
T Consensus 81 ~~~~~nk~~I~~~G-aI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~ 158 (233)
T 3tt9_A 81 FEDNDNKLEVAELN-GVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPK 158 (233)
T ss_dssp TTCHHHHHHHHHTT-HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCC
T ss_pred hCCHHHHHHHHHcC-CHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCccccccc
Confidence 85 56899999975 6999999998 478999999999999999999999999875 6999998763 1
Q ss_pred ----cCHhHHHHHHHHHHHhccCC-chhHHHHhh-CchHHHHHHhhcC--------chHHHHHHHHHHHhcC
Q 020640 174 ----GHQSAMKDVASAIFNLCITH-ENKARAVRD-GGVSVILKKIMDG--------VHVDELLAILAMLSTN 231 (323)
Q Consensus 174 ----~~~~~~~~al~aL~~L~~~~-~~~~~i~~~-g~v~~Lv~ll~~~--------~~~~~a~~~L~~l~~~ 231 (323)
.+..++.+|.++|+||+..+ ++|..+.+. |+|+.|+.+++.+ ..++.|+.+|+||+..
T Consensus 159 ~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 159 ANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred ccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 25689999999999999866 888889886 7789999999852 4689999999999873
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.91 E-value=2.8e-23 Score=174.96 Aligned_cols=193 Identities=13% Similarity=0.237 Sum_probs=173.0
Q ss_pred cCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcccc-chhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 020640 72 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD-NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSA 150 (323)
Q Consensus 72 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~ 150 (323)
.|..+.|+.+|+ ++++.++..|+.+|.+++..+ +.+..+.+.+ +++.|+.+|++++++++..++++|.+++.
T Consensus 11 ~~~~~~l~~LL~------s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g-~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 83 (210)
T 4db6_A 11 GSELPQMVQQLN------SPDQQELQSALRKLSQIASGGNEQIQAVIDAG-ALPALVQLLSSPNEQILQEALWALSNIAS 83 (210)
T ss_dssp --CHHHHHHHTT------CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT-HHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred cchhHHHHHHhc------CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC-CHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 688999999999 789999999999999999554 4777888865 79999999999999999999999999995
Q ss_pred -CCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCc-hhHHHHhhCchHHHHHHhhcC--chHHHHHHHHH
Q 020640 151 -LDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHE-NKARAVRDGGVSVILKKIMDG--VHVDELLAILA 226 (323)
Q Consensus 151 -~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~ 226 (323)
.++++..+++.|+++.|+++|+++++.++..|+++|+||+.+++ .+..+++.|+++.|+++++++ .++..++++|.
T Consensus 84 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 163 (210)
T 4db6_A 84 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 163 (210)
T ss_dssp SCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 55678888999999999999999999999999999999998664 556678889999999999976 68999999999
Q ss_pred HHhcC-HHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcc
Q 020640 227 MLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICL 272 (323)
Q Consensus 227 ~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~ 272 (323)
+++.. ++.+..+.+.|+++.|++++.+++ +.+++.|+.+|.+|+.
T Consensus 164 ~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 164 NIASGGNEQKQAVKEAGALEKLEQLQSHEN-EKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHTSCHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHCC
T ss_pred HHHcCCcHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHhc
Confidence 99997 889999999999999999999654 9999999999999985
No 36
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.90 E-value=3.1e-22 Score=194.28 Aligned_cols=280 Identities=11% Similarity=0.110 Sum_probs=225.7
Q ss_pred hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640 31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 109 (323)
Q Consensus 31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~ 109 (323)
...+.+.+.|. ++.+.+..|+..|..++. +++.|..+++..|+++.|+++++. .++..+...++.+|.|++..
T Consensus 334 ~La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~-----~~d~s~~Ygal~IL~NLt~~ 407 (778)
T 3opb_A 334 QLSEIFINAISRRIVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKS-----QKMTHCLYGLLVIMANLSTL 407 (778)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTT-----TCCTTHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhC-----CCCchHHHHHHHHHHHhcCC
Confidence 46677777775 355668999999999996 677899988757779999999984 24678899999999999753
Q ss_pred cc---------------------------------------hhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 020640 110 DN---------------------------------------NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSA 150 (323)
Q Consensus 110 ~~---------------------------------------~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~ 150 (323)
.+ ++..+.+ .|+++.|+.+++++++.+++.++++|.+|+.
T Consensus 408 ~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~e-aGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~ 486 (778)
T 3opb_A 408 PEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILR-TELISFLKREMHNLSPNCKQQVVRIIYNITR 486 (778)
T ss_dssp CCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTT-TTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT
T ss_pred CcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHH-CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 22 2344555 4689999999999999999999999999999
Q ss_pred CCCchhhhhccCChHHHHHHhhhcCHh---HHHHHHHHHHHhccCCchhHHHH--h-hCchHHHHHHhhc--C-c-----
Q 020640 151 LDSNKEVIGKSGALKPLIDLLDEGHQS---AMKDVASAIFNLCITHENKARAV--R-DGGVSVILKKIMD--G-V----- 216 (323)
Q Consensus 151 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~---~~~~al~aL~~L~~~~~~~~~i~--~-~g~v~~Lv~ll~~--~-~----- 216 (323)
++++|..+++.|++++|+.++.++... .+..|+.+|.+|+...+....+- . .|++++|+.+|.. + .
T Consensus 487 d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~ 566 (778)
T 3opb_A 487 SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLH 566 (778)
T ss_dssp SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC--
T ss_pred CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccc
Confidence 999999999999999999999987544 89999999999987665444331 1 3899999999983 2 1
Q ss_pred --------hHHHHHHHHHHHhcCH-----HHHHHHHhc-CCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHH
Q 020640 217 --------HVDELLAILAMLSTNH-----RAVEEIGDL-GGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMR 282 (323)
Q Consensus 217 --------~~~~a~~~L~~l~~~~-----~~~~~i~~~-g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 282 (323)
.+..|+.+|.|||..+ +.|..++++ |+++.|..++.+++ +.++++|+++++||+.+.......++
T Consensus 567 ~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n-~~VrrAA~elI~NL~~~~e~i~~k~~ 645 (778)
T 3opb_A 567 NDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDEN-VPLQRSTLELISNMMSHPLTIAAKFF 645 (778)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSS-HHHHHHHHHHHHHHHTSGGGTGGGTS
T ss_pred ccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCC-HHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 1778999999999975 568888986 99999999999654 89999999999999986643112443
Q ss_pred hh-----cccHHHHHHHhhcCCHHHHHHHHHHHHHHh-cchh
Q 020640 283 EE-----ESTHGTISKLAQDGTARAKRKATGILERLK-RTVN 318 (323)
Q Consensus 283 ~~-----~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~-~~~~ 318 (323)
.. .+.++.|+.++++++.++++.|.|+|.+++ .++.
T Consensus 646 ~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ 687 (778)
T 3opb_A 646 NLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPL 687 (778)
T ss_dssp CCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHH
T ss_pred hhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChH
Confidence 21 224889999999999999999999999996 4443
No 37
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.88 E-value=4.3e-21 Score=169.90 Aligned_cols=222 Identities=19% Similarity=0.169 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHH-HHhcCCHHHHHHHHHHHHHhcCCC-CchhhhhccCChHHHHHH
Q 020640 93 PNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMD-ALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDL 170 (323)
Q Consensus 93 ~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~-ll~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~l 170 (323)
.+-+..|+..|.++..+.++...+.+.| .++.|+. +|++++++++..|+++|.+++.+. .++..+++.|++++|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G-~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLS-GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTT-HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcC-CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 4678889999999998888888888876 5899999 999999999999999999999764 467888899999999999
Q ss_pred hhhc-CHhHHHHHHHHHHHhccCCc-hhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc-CHHHHHHHHhcCCHH
Q 020640 171 LDEG-HQSAMKDVASAIFNLCITHE-NKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLGGVS 245 (323)
Q Consensus 171 L~~~-~~~~~~~al~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~ 245 (323)
|+++ +..++..|+++|.||+.+++ ....+++.|+++.|+.+|+++ .++..++++|.+++. +++.+..+++.|+++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 9974 78999999999999998775 456778889999999999987 689999999999998 588999999999999
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHH----HHHhh-cC-CHHHHHHHHHHHHHHhcc
Q 020640 246 CMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTI----SKLAQ-DG-TARAKRKATGILERLKRT 316 (323)
Q Consensus 246 ~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L----~~ll~-~~-~~~~~~~A~~~L~~l~~~ 316 (323)
.|+.+|..++ ..+++.|+.+|.+|+...+......-.....+..+ .+-++ ++ ..+..++|..++.++...
T Consensus 213 ~Lv~LL~~~d-~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~~ 288 (296)
T 1xqr_A 213 QLVALVRTEH-SPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSS 288 (296)
T ss_dssp HHHHHHTSCC-STHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHcCCC-hhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcCC
Confidence 9999999654 89999999999999998654333322111112222 22344 33 678899999999988743
No 38
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.86 E-value=8.1e-20 Score=161.69 Aligned_cols=237 Identities=17% Similarity=0.141 Sum_probs=185.8
Q ss_pred hhhhhHHHHHHHHhcCC-------------chhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHH-hhcccccCCCCC
Q 020640 27 EADRDHFLSLLKKMSAT-------------LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLS-PLSESKCENGIN 92 (323)
Q Consensus 27 ~~~~~~i~~Lv~~l~~~-------------~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~-lL~~~~~~~~~~ 92 (323)
+.+...++..+..|.+. .+.+..|+..|.+++. +.++...|.+ .|+++.|+. +|. +++
T Consensus 24 ~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~-~~dna~~~~~-~G~l~~Lv~~lL~------s~~ 95 (296)
T 1xqr_A 24 RGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE-NMDNAADFCQ-LSGMHLLVGRYLE------AGA 95 (296)
T ss_dssp HHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHT-SHHHHHHHHH-TTHHHHHHHTTTT------CSS
T ss_pred CCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHh-ChhhHHHHHH-cCCHHHHHHHHHc------CCC
Confidence 34446777788888542 2468889999999995 6778889999 999999999 999 778
Q ss_pred HHHHHHHHHHHHHhccccc-hhhhhhccCCcHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCC-CchhhhhccCChHHHHH
Q 020640 93 PNLQEDVITTLLNLSIHDN-NKKLVAETPMVIPLLMDALRSG-TIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLID 169 (323)
Q Consensus 93 ~~~~~~a~~~L~~ls~~~~-~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~ 169 (323)
+.++..|+++|.+++.+++ .+..+++.| +++.|+.+|+++ +..+++.|+++|.+++.+. +....+.+.|+++.|+.
T Consensus 96 ~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g-~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~ 174 (296)
T 1xqr_A 96 AGLRWRAAQLIGTCSQNVAAIQEQVLGLG-ALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMR 174 (296)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTT-HHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHCC-CHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHH
Confidence 9999999999999998766 677788765 699999999964 8899999999999998754 44667788999999999
Q ss_pred HhhhcCHhHHHHHHHHHHHhccCC-chhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHhcC-CH
Q 020640 170 LLDEGHQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLG-GV 244 (323)
Q Consensus 170 lL~~~~~~~~~~al~aL~~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~g-~i 244 (323)
+|++++..++..|+++|.+|+.++ +.+..+++.|+++.|+.+|.++ .+++.++++|.+|+.. +..+..+...+ .+
T Consensus 175 lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l 254 (296)
T 1xqr_A 175 AMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGL 254 (296)
T ss_dssp HHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCH
T ss_pred HHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHH
Confidence 999999999999999999998865 5778889999999999999976 7899999999999996 44444443221 12
Q ss_pred HHH----HHHHhccC-ChhHHHHHHHHHHHhcc
Q 020640 245 SCM----LRIIREST-CDRNKENCIAILHTICL 272 (323)
Q Consensus 245 ~~L----v~ll~~~~-~~~~~~~a~~~L~~L~~ 272 (323)
..+ .+-++..+ +....+.|..++..+..
T Consensus 255 ~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 255 EELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence 111 22222111 24455566666665553
No 39
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.75 E-value=1.9e-16 Score=150.35 Aligned_cols=280 Identities=14% Similarity=0.179 Sum_probs=222.9
Q ss_pred hhhhhHHHHHHHHhc--CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHH
Q 020640 27 EADRDHFLSLLKKMS--ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLL 104 (323)
Q Consensus 27 ~~~~~~i~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~ 104 (323)
++..+.|+.|++.++ .-.+.|+.|+..|+.+++ +++..+.. ++++.|++.|+.. .+|.++...++.+|.
T Consensus 17 qs~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk---~y~~~Vg~--~~l~~li~~L~~d----~~D~e~v~~~LetL~ 87 (651)
T 3grl_A 17 HTEAETIQKLCDRVASSTLLDDRRNAVRALKSLSK---KYRLEVGI--QAMEHLIHVLQTD----RSDSEIIGYALDTLY 87 (651)
T ss_dssp -CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTT---TTTTHHHH--HTHHHHHHHHHSC----TTCHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHH---HhHHHhhh--hhHHHHHHHHhcc----cccHHHHHHHHHHHH
Confidence 345589999999996 348899999999999985 35666666 7899999999865 578999999999998
Q ss_pred Hhccccch------------------hhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC--chhhhhc-cCC
Q 020640 105 NLSIHDNN------------------KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS--NKEVIGK-SGA 163 (323)
Q Consensus 105 ~ls~~~~~------------------~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~--~~~~i~~-~g~ 163 (323)
++...++. ...+.+..+.++.|+.+|++.+..++..++..|..|+.+.. .+..+.. .++
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~g 167 (651)
T 3grl_A 88 NIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMG 167 (651)
T ss_dssp HHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTH
T ss_pred HHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCccc
Confidence 86443321 12344445569999999999999999999999999986543 5677775 799
Q ss_pred hHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhh-CchHHHHHHhhcC------chHHHHHHHHHHHhcC-HHHH
Q 020640 164 LKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRD-GGVSVILKKIMDG------VHVDELLAILAMLSTN-HRAV 235 (323)
Q Consensus 164 i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~-g~v~~Lv~ll~~~------~~~~~a~~~L~~l~~~-~~~~ 235 (323)
++.|+.+|++..+.++..++..|.+|+.++.+.++++.. |+++.|+.++..+ .+...|+.+|.||..+ +.++
T Consensus 168 i~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ 247 (651)
T 3grl_A 168 VSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQ 247 (651)
T ss_dssp HHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHH
Confidence 999999999999999999999999999999998888876 9999999999853 4688999999999995 7899
Q ss_pred HHHHhcCCHHHHHHHHhccCCh-----hHHH---HHHHHHHHhcccCh-----HhHHHHHhhcccHHHHHHHhhcC--CH
Q 020640 236 EEIGDLGGVSCMLRIIRESTCD-----RNKE---NCIAILHTICLSDR-----TKWKAMREEESTHGTISKLAQDG--TA 300 (323)
Q Consensus 236 ~~i~~~g~i~~Lv~ll~~~~~~-----~~~~---~a~~~L~~L~~~~~-----~~~~~~~~~~~~i~~L~~ll~~~--~~ 300 (323)
..|.+.|+++.|..+++.+... .... .+..++..|+..+. ...+..+.+.|++..|++++.+. ..
T Consensus 248 ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~ 327 (651)
T 3grl_A 248 NFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPA 327 (651)
T ss_dssp HHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCH
T ss_pred HHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCH
Confidence 9999999999999999753311 1122 26666777766521 12344556799999999998876 67
Q ss_pred HHHHHHHHHHHHHhc
Q 020640 301 RAKRKATGILERLKR 315 (323)
Q Consensus 301 ~~~~~A~~~L~~l~~ 315 (323)
.++..|..++..+.+
T Consensus 328 ~i~~~Al~tla~~ir 342 (651)
T 3grl_A 328 DILTETINTVSEVIR 342 (651)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 888888888877664
No 40
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.61 E-value=3e-13 Score=128.48 Aligned_cols=280 Identities=13% Similarity=0.110 Sum_probs=216.9
Q ss_pred hhhHHHHHHHHhc---CCchhHHHHHHHHHHHhccChh-----------------hHHHHhhhcCCHHHHHHhhcccccC
Q 020640 29 DRDHFLSLLKKMS---ATLPDQTEAAKELRLLTKRMPS-----------------FRALFGESHDAIPQLLSPLSESKCE 88 (323)
Q Consensus 29 ~~~~i~~Lv~~l~---~~~~~~~~a~~~L~~l~~~~~~-----------------~~~~i~~~~g~i~~Lv~lL~~~~~~ 88 (323)
...+++.|+..|+ +|.++...++.+|.++...+++ +...|.+..+.|+.|+++|+
T Consensus 58 g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~----- 132 (651)
T 3grl_A 58 GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLE----- 132 (651)
T ss_dssp HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTT-----
T ss_pred hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhc-----
Confidence 3467899999995 4567777899999887754432 22345443788999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccccc--hhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhc-cCChH
Q 020640 89 NGINPNLQEDVITTLLNLSIHDN--NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK-SGALK 165 (323)
Q Consensus 89 ~~~~~~~~~~a~~~L~~ls~~~~--~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~ 165 (323)
+++..++.+++..|..|+.... .+..|...++.++.|+.+|.+.++.++..++..|.+|+.+..+..+++. +|+++
T Consensus 133 -~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe 211 (651)
T 3grl_A 133 -EFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFE 211 (651)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred -CccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHH
Confidence 7799999999999999876554 6888887766799999999999999999999999999988888777777 89999
Q ss_pred HHHHHhhhcC----HhHHHHHHHHHHHhccCCc-hhHHHHhhCchHHHHHHhhcC-c-------hHHH---HHHHHHHHh
Q 020640 166 PLIDLLDEGH----QSAMKDVASAIFNLCITHE-NKARAVRDGGVSVILKKIMDG-V-------HVDE---LLAILAMLS 229 (323)
Q Consensus 166 ~Lv~lL~~~~----~~~~~~al~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~-~-------~~~~---a~~~L~~l~ 229 (323)
.|+.++..+. ..+...|+.+|.||..++. |...+.+.|+++.|..+++.+ . ...+ ++.++.-+.
T Consensus 212 ~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv 291 (651)
T 3grl_A 212 RLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLV 291 (651)
T ss_dssp HHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHh
Confidence 9999999753 4788999999999999884 777788889999999999744 1 1122 556666665
Q ss_pred cC-------HHHHHHHHhcCCHHHHHHHHhccC-ChhHHHHHHHHHHHhcccChHhHHHHHhh--------cccHHHHHH
Q 020640 230 TN-------HRAVEEIGDLGGVSCMLRIIREST-CDRNKENCIAILHTICLSDRTKWKAMREE--------ESTHGTISK 293 (323)
Q Consensus 230 ~~-------~~~~~~i~~~g~i~~Lv~ll~~~~-~~~~~~~a~~~L~~L~~~~~~~~~~~~~~--------~~~i~~L~~ 293 (323)
.. +.++..+.+.|+++.|++++..+. ...++..|+.++..+..+++.....+... ...+..|+.
T Consensus 292 ~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~ 371 (651)
T 3grl_A 292 SPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMS 371 (651)
T ss_dssp CTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHH
Confidence 53 367889999999999999998542 37789999999999999997754444321 123333444
Q ss_pred HhhcC-CHHHHHHHHHHHHHHh
Q 020640 294 LAQDG-TARAKRKATGILERLK 314 (323)
Q Consensus 294 ll~~~-~~~~~~~A~~~L~~l~ 314 (323)
++.+. ...++..|..+++.+.
T Consensus 372 ~~~~~~~~~lR~Aa~~cl~ay~ 393 (651)
T 3grl_A 372 MVNERQPFVLRCAVLYCFQCFL 393 (651)
T ss_dssp HTCTTSCHHHHHHHHHHHHHHH
T ss_pred HhcccccHHHHHHHHHHHHHHH
Confidence 45443 5777888888877766
No 41
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.41 E-value=2.6e-11 Score=101.52 Aligned_cols=191 Identities=19% Similarity=0.198 Sum_probs=153.9
Q ss_pred cCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 020640 72 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL 151 (323)
Q Consensus 72 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~ 151 (323)
.+.++.|+..|+ ++++.++..|+..|..+.. ...++.|+.+++++++.++..++.+|..+..
T Consensus 18 ~~~~~~L~~~L~------~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQ------DDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD- 79 (211)
T ss_dssp GGGHHHHHHHTT------CSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-
T ss_pred HhHHHHHHHHHc------CCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-
Confidence 567999999999 7799999999999998743 2368999999999999999999999988852
Q ss_pred CCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHh
Q 020640 152 DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLS 229 (323)
Q Consensus 152 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~ 229 (323)
.+.++.|+++|.++++.++..++.+|..+.. .+.++.|+.++.++ .++..++.+|..+.
T Consensus 80 ---------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 140 (211)
T 3ltm_A 80 ---------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG 140 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 3578999999999999999999999998743 35788999999877 57899999998884
Q ss_pred cCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHH
Q 020640 230 TNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGI 309 (323)
Q Consensus 230 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~ 309 (323)
. ...++.|..++++.+ +.++..|+.+|..+.. ...++.|.+++.++++.++..|..+
T Consensus 141 ~----------~~~~~~L~~~l~d~~-~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~a 197 (211)
T 3ltm_A 141 D----------ERAVEPLIKALKDED-GWVRQSAADALGEIGG------------ERVRAAMEKLAETGTGFARKVAVNY 197 (211)
T ss_dssp C----------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred C----------HHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3 246889999998654 8999999999999843 2456778889999999999999999
Q ss_pred HHHHhcchhhccC
Q 020640 310 LERLKRTVNLTHT 322 (323)
Q Consensus 310 L~~l~~~~~~~~~ 322 (323)
|..+.....-.++
T Consensus 198 L~~~~~~~~~~~~ 210 (211)
T 3ltm_A 198 LETHKSFNHHHHH 210 (211)
T ss_dssp HHC----------
T ss_pred HHhcCCCCCCCCC
Confidence 9999887665544
No 42
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.38 E-value=3.5e-11 Score=105.26 Aligned_cols=226 Identities=11% Similarity=0.027 Sum_probs=155.1
Q ss_pred hhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640 28 ADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 106 (323)
Q Consensus 28 ~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l 106 (323)
.....++.|++.|. +++.+|..|+..|.++.. .+.++.|+.+|. ++++.++..|+.+|..+
T Consensus 20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~------d~~~~vR~~A~~aL~~l 81 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCS------DKNYIRRDIGAFILGQI 81 (280)
T ss_dssp HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHT------CSSHHHHHHHHHHHHHS
T ss_pred HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHc------CCCHHHHHHHHHHHHHh
Confidence 34568899999996 668899999999998761 346788999998 77899999999999888
Q ss_pred ccccchhhhhhccCCcHHHHH-HHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHH
Q 020640 107 SIHDNNKKLVAETPMVIPLLM-DALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASA 185 (323)
Q Consensus 107 s~~~~~~~~i~~~~g~i~~Lv-~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~a 185 (323)
........ .+++.|. .++.++++.++..++++|..+...... ....+++.|+.++.++++.++..++.+
T Consensus 82 ~~~~~~~~------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~a 151 (280)
T 1oyz_A 82 KICKKCED------NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFA 151 (280)
T ss_dssp CCCTTTHH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred ccccccch------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 64322111 1234444 245678899999999999998632211 123467888888888888999999998
Q ss_pred HHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHH
Q 020640 186 IFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENC 263 (323)
Q Consensus 186 L~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a 263 (323)
|.++.. .++++.|+.+++++ .++..++.+|..+.... ..+++.|+.++++++ +.++..|
T Consensus 152 L~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~~-~~vR~~A 212 (280)
T 1oyz_A 152 ISVIND----------KATIPLLINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKN-EEVRIEA 212 (280)
T ss_dssp HHTC-------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSC-HHHHHHH
T ss_pred HHhcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCCC-HHHHHHH
Confidence 887643 24788888888876 57888888888774321 124567777777544 7788888
Q ss_pred HHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 020640 264 IAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK 314 (323)
Q Consensus 264 ~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~ 314 (323)
+.+|..+.. ...++.|++++.+++ ++..|..+|..+.
T Consensus 213 ~~aL~~~~~------------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~ 249 (280)
T 1oyz_A 213 IIGLSYRKD------------KRVLSVLCDELKKNT--VYDDIIEAAGELG 249 (280)
T ss_dssp HHHHHHTTC------------GGGHHHHHHHHTSSS--CCHHHHHHHHHHC
T ss_pred HHHHHHhCC------------HhhHHHHHHHhcCcc--HHHHHHHHHHhcC
Confidence 888877652 134455555554433 5555555555544
No 43
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.32 E-value=2e-10 Score=96.04 Aligned_cols=187 Identities=17% Similarity=0.137 Sum_probs=151.7
Q ss_pred hhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc
Q 020640 30 RDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 108 (323)
Q Consensus 30 ~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~ 108 (323)
.+.++.|++.|. .++.+|..|+..|..+.. ..+++.|+++|. ++++.++..++.+|..+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~------~~~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALK------DEDAWVRRAAADALGQIGD 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTT------CSCHHHHHHHHHHHHHHCC
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHc------CCCHHHHHHHHHHHHhhCC
Confidence 368999999996 678899999999987652 357899999999 7789999999999998752
Q ss_pred ccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHH
Q 020640 109 HDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFN 188 (323)
Q Consensus 109 ~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~ 188 (323)
.+.++.|+.+++++++.++..++.+|..+.. ...++.|++++.++++.++..++.+|..
T Consensus 80 -----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 138 (211)
T 3ltm_A 80 -----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGE 138 (211)
T ss_dssp -----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 2368899999999999999999999998843 3478999999999999999999999999
Q ss_pred hccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHH
Q 020640 189 LCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAI 266 (323)
Q Consensus 189 L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~ 266 (323)
+.. ...++.|..++.++ .++..++.+|..+.. ..+++.|..++++++ +.++..|..+
T Consensus 139 ~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~-~~vr~~A~~a 197 (211)
T 3ltm_A 139 IGD----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGT-GFARKVAVNY 197 (211)
T ss_dssp HCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCC-HHHHHHHHHH
T ss_pred cCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCC-HHHHHHHHHH
Confidence 842 24788899999876 678999999998853 235778888888655 9999999999
Q ss_pred HHHhcccChH
Q 020640 267 LHTICLSDRT 276 (323)
Q Consensus 267 L~~L~~~~~~ 276 (323)
|..+.....+
T Consensus 198 L~~~~~~~~~ 207 (211)
T 3ltm_A 198 LETHKSFNHH 207 (211)
T ss_dssp HHC-------
T ss_pred HHhcCCCCCC
Confidence 9998876643
No 44
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.32 E-value=2e-10 Score=95.31 Aligned_cols=184 Identities=19% Similarity=0.205 Sum_probs=153.5
Q ss_pred cCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 020640 72 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL 151 (323)
Q Consensus 72 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~ 151 (323)
.+..+.+++.|. ++++.++..|+..|..+.. ...++.|+.+++++++.++..++.+|..+..
T Consensus 13 ~~~~~~~i~~L~------~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~- 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQ------DDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD- 74 (201)
T ss_dssp HHHHHHHHHHTT------CSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-
T ss_pred CcchHHHHHHhc------CCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-
Confidence 456788999999 8899999999999997753 1358899999999999999999999988743
Q ss_pred CCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHh
Q 020640 152 DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLS 229 (323)
Q Consensus 152 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~ 229 (323)
..+++.|+++|.++++.++..|+.+|..+.. ...++.|+.++.++ .++..++.+|..+.
T Consensus 75 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 75 ---------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG 135 (201)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 3578999999999999999999999998743 24788899999876 57899999998875
Q ss_pred cCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHH
Q 020640 230 TNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGI 309 (323)
Q Consensus 230 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~ 309 (323)
. .+.++.|..++.+.+ +.++..|+.+|..+.. ...++.|.+++.++++.++..|..+
T Consensus 136 ~----------~~~~~~L~~~l~d~~-~~vr~~A~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~a 192 (201)
T 3ltj_A 136 D----------ERAVEPLIKALKDED-GWVRQSAADALGEIGG------------ERVRAAMEKLAETGTGFARKVAVNY 192 (201)
T ss_dssp C----------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred C----------HHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3 357889999998654 8899999999999832 2367788888999999999999999
Q ss_pred HHHHhc
Q 020640 310 LERLKR 315 (323)
Q Consensus 310 L~~l~~ 315 (323)
|..+..
T Consensus 193 L~~l~~ 198 (201)
T 3ltj_A 193 LETHKS 198 (201)
T ss_dssp HHHCC-
T ss_pred HHHHHh
Confidence 988764
No 45
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.31 E-value=2.9e-10 Score=94.35 Aligned_cols=185 Identities=17% Similarity=0.149 Sum_probs=153.0
Q ss_pred hhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640 28 ADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 106 (323)
Q Consensus 28 ~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l 106 (323)
...+..+.+++.|+ .++.+|..|+..|..+.. .+.++.|+++|. ++++.++..|+.+|..+
T Consensus 11 ~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~------~~~~~vr~~a~~~L~~~ 72 (201)
T 3ltj_A 11 TDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALK------DEDAWVRRAAADALGQI 72 (201)
T ss_dssp CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC------------GGGHHHHHHHTT------CSSHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHc------CCCHHHHHHHHHHHHhh
Confidence 44478999999996 679999999999987652 356889999998 77899999999999887
Q ss_pred ccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHH
Q 020640 107 SIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAI 186 (323)
Q Consensus 107 s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL 186 (323)
.. ...++.|+.++.++++.++..++++|..+.. ..+++.|++++.++++.++..++.+|
T Consensus 73 ~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL 131 (201)
T 3ltj_A 73 GD-----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFAL 131 (201)
T ss_dssp CC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred CC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 42 1358899999999999999999999998743 34789999999999999999999999
Q ss_pred HHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHH
Q 020640 187 FNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCI 264 (323)
Q Consensus 187 ~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~ 264 (323)
..+.. .+.++.|..++.++ .++..++.+|..+.. ..+++.|..++.+.+ +.++..|.
T Consensus 132 ~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~~-~~vr~~A~ 190 (201)
T 3ltj_A 132 GEIGD----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGT-GFARKVAV 190 (201)
T ss_dssp HHHTC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCC-HHHHHHHH
T ss_pred HHhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCC-HHHHHHHH
Confidence 98742 35788999999876 678999999998832 235788888888655 89999999
Q ss_pred HHHHHhcc
Q 020640 265 AILHTICL 272 (323)
Q Consensus 265 ~~L~~L~~ 272 (323)
.+|..+..
T Consensus 191 ~aL~~l~~ 198 (201)
T 3ltj_A 191 NYLETHKS 198 (201)
T ss_dssp HHHHHCC-
T ss_pred HHHHHHHh
Confidence 99988653
No 46
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.30 E-value=2.5e-11 Score=122.40 Aligned_cols=271 Identities=10% Similarity=0.046 Sum_probs=186.9
Q ss_pred hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640 31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 109 (323)
Q Consensus 31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~ 109 (323)
..++.+++.++ .+..+|..|+.+|..+....+.. ......+.++.++.++. ++++.++..++.+|..++..
T Consensus 174 ~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~--~~~~~~~~l~~l~~~~~------d~~~~vr~~a~~~L~~l~~~ 245 (852)
T 4fdd_A 174 IMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQA--LMLHIDSFIENLFALAG------DEEPEVRKNVCRALVMLLEV 245 (852)
T ss_dssp HHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHH--HHTSHHHHHHHHHHHHT------CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHH--HHHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHHHHh
Confidence 45666666665 55888999999999888643321 11111246777777777 77899999999999998764
Q ss_pred cchh-hhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhc--cCChHHHHHHh-----------hh--
Q 020640 110 DNNK-KLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK--SGALKPLIDLL-----------DE-- 173 (323)
Q Consensus 110 ~~~~-~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~--~g~i~~Lv~lL-----------~~-- 173 (323)
.... ..... ++++.++..+++.++.++..++.++..++.....+..+.. ...++.+++.+ .+
T Consensus 246 ~~~~~~~~l~--~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ 323 (852)
T 4fdd_A 246 RMDRLLPHMH--NIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVE 323 (852)
T ss_dssp CHHHHGGGHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC---
T ss_pred CHHHHHHHHH--HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcc
Confidence 4321 11122 3678888888888999999999999999876543332221 23566666665 22
Q ss_pred ---------cCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcC
Q 020640 174 ---------GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLG 242 (323)
Q Consensus 174 ---------~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g 242 (323)
.+..++..+..+|..|+..... .++. ..++.+..++.+. ..++.|+.+|.+++........-.-.+
T Consensus 324 ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~--~~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~ 400 (852)
T 4fdd_A 324 GGSGGDDTISDWNLRKCSAAALDVLANVYRD--ELLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPE 400 (852)
T ss_dssp ---------CCCCHHHHHHHHHHHHHHHHGG--GGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHH
T ss_pred cccccccccccchHHHHHHHHHHHHHHhccH--HHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 1224688889999888764331 1222 2566777777765 679999999999998643211112235
Q ss_pred CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHh-HHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 020640 243 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTK-WKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 317 (323)
Q Consensus 243 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 317 (323)
+++.++..+++.+ +.++..|++++.+++..-+.. ....+ ...++.|++.+.++++.++..|.++|.++++..
T Consensus 401 ~l~~l~~~l~d~~-~~Vr~~a~~~l~~l~~~~~~~~~~~~~--~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~ 473 (852)
T 4fdd_A 401 LIPHLIQCLSDKK-ALVRSITCWTLSRYAHWVVSQPPDTYL--KPLMTELLKRILDSNKRVQEAACSAFATLEEEA 473 (852)
T ss_dssp HHHHHHHHTTCSS-HHHHHHHHHHHHHTHHHHHHSCTTTTH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhccchHHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 6888999998655 999999999999998753221 11222 367888999998899999999999999998643
No 47
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.29 E-value=8.4e-11 Score=118.59 Aligned_cols=271 Identities=14% Similarity=0.102 Sum_probs=190.4
Q ss_pred hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhh------hcCCHHHHHHhhcccccCCCCCHHHHHHHHHHH
Q 020640 31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGE------SHDAIPQLLSPLSESKCENGINPNLQEDVITTL 103 (323)
Q Consensus 31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~------~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L 103 (323)
+.++.|++.+. .+...+..|+.+|..++...+.. +.. ....++.+++.++ ++++.++..|+.+|
T Consensus 128 ~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~---~~~~~~~~~~~~il~~l~~~l~------~~~~~vR~~A~~aL 198 (852)
T 4fdd_A 128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI---LDSDVLDRPLNIMIPKFLQFFK------HSSPKIRSHAVACV 198 (852)
T ss_dssp THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTH---HHHCSSSSCHHHHHHHHTTTTT------CSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHH---hchhhhcchHHHHHHHHHHHhc------CCCHHHHHHHHHHH
Confidence 57888888886 56788999999999999654332 211 0235666777776 77899999999999
Q ss_pred HHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHH
Q 020640 104 LNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVA 183 (323)
Q Consensus 104 ~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al 183 (323)
.++....... .......+++.++..+.+++++++..++++|..++........-.-.++++.+++.+.+.++.++..|+
T Consensus 199 ~~~~~~~~~~-~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~ 277 (852)
T 4fdd_A 199 NQFIISRTQA-LMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEAC 277 (852)
T ss_dssp HTTTTTTCHH-HHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHhcccHH-HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHH
Confidence 9876543321 111112367788888889999999999999999985432111101134778888888888899999999
Q ss_pred HHHHHhccCCchhHHHHh--hCchHHHHHHh-----------hc-----------C--chHHHHHHHHHHHhcCHHHHHH
Q 020640 184 SAIFNLCITHENKARAVR--DGGVSVILKKI-----------MD-----------G--VHVDELLAILAMLSTNHRAVEE 237 (323)
Q Consensus 184 ~aL~~L~~~~~~~~~i~~--~g~v~~Lv~ll-----------~~-----------~--~~~~~a~~~L~~l~~~~~~~~~ 237 (323)
.++.+++.....+..+-. ...++.++..+ .+ . .++..+..+|..++.... ..
T Consensus 278 e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~ 355 (852)
T 4fdd_A 278 EFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DE 355 (852)
T ss_dssp HHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GG
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HH
Confidence 999999876543332211 13566676666 22 1 357778888888886321 11
Q ss_pred HHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 020640 238 IGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 317 (323)
Q Consensus 238 i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 317 (323)
+.. .+++.+...+.+. +.++++.|+.+|..++..........+ ...++.|+..+.+.++.++..|+++|.+++...
T Consensus 356 ~~~-~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~~l--~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 431 (852)
T 4fdd_A 356 LLP-HILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPYL--PELIPHLIQCLSDKKALVRSITCWTLSRYAHWV 431 (852)
T ss_dssp GHH-HHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGGGH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHH
T ss_pred HHH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 221 3467777777755 489999999999999987755333332 478899999999999999999999999998743
No 48
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.26 E-value=9.6e-10 Score=96.02 Aligned_cols=200 Identities=9% Similarity=0.019 Sum_probs=153.7
Q ss_pred HhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020640 68 FGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFT 147 (323)
Q Consensus 68 i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~ 147 (323)
+.+ .+.++.|+..|. ++++.++..|+.+|.++.. .++++.|+.+++++++.++..++++|..
T Consensus 19 ~~~-~~~i~~L~~~L~------~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~ 80 (280)
T 1oyz_A 19 QCK-KLNDDELFRLLD------DHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQ 80 (280)
T ss_dssp HHH-TSCHHHHHHHTT------CSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHH-HhhHHHHHHHHH------cCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 445 678999999998 7799999999999998862 2368889999999999999999999999
Q ss_pred hcCCCCchhhhhccCChHHHHH-HhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHH
Q 020640 148 LSALDSNKEVIGKSGALKPLID-LLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAI 224 (323)
Q Consensus 148 L~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~ 224 (323)
+...+.... ..++.|.+ ++.++++.++..++.+|.++...+... ....++.|+.++.++ .++..++.+
T Consensus 81 l~~~~~~~~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~----~~~~~~~L~~~l~d~~~~vR~~a~~a 151 (280)
T 1oyz_A 81 IKICKKCED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY----SPKIVEQSQITAFDKSTNVRRATAFA 151 (280)
T ss_dssp SCCCTTTHH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred hccccccch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc----cHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 864332111 12334442 346678999999999999986433211 123678888989877 578888888
Q ss_pred HHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHH
Q 020640 225 LAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKR 304 (323)
Q Consensus 225 L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~ 304 (323)
|.++.. .++++.|+.++++.+ +.++..|+.+|..+....+ ..++.|.+++.++++.++.
T Consensus 152 L~~~~~----------~~~~~~L~~~l~d~~-~~vr~~a~~aL~~~~~~~~----------~~~~~L~~~l~d~~~~vR~ 210 (280)
T 1oyz_A 152 ISVIND----------KATIPLLINLLKDPN-GDVRNWAAFAININKYDNS----------DIRDCFVEMLQDKNEEVRI 210 (280)
T ss_dssp HHTC-------------CCHHHHHHHHTCSS-HHHHHHHHHHHHHHTCCCH----------HHHHHHHHHTTCSCHHHHH
T ss_pred HHhcCC----------HHHHHHHHHHHcCCC-HHHHHHHHHHHHhhccCcH----------HHHHHHHHHhcCCCHHHHH
Confidence 887643 357999999999654 8899999999999854432 3567888999999999999
Q ss_pred HHHHHHHHHhc
Q 020640 305 KATGILERLKR 315 (323)
Q Consensus 305 ~A~~~L~~l~~ 315 (323)
.|.++|..+..
T Consensus 211 ~A~~aL~~~~~ 221 (280)
T 1oyz_A 211 EAIIGLSYRKD 221 (280)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHhCC
Confidence 99999998874
No 49
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.16 E-value=2.3e-10 Score=112.62 Aligned_cols=191 Identities=15% Similarity=0.181 Sum_probs=147.5
Q ss_pred CCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Q 020640 73 DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD 152 (323)
Q Consensus 73 g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~ 152 (323)
..|.++++.|+ +.++..+..|+.+|.+|+.+...+..+...+++.+.+..+|.+++.+++..|+++|+||+...
T Consensus 34 ~~i~Pll~~L~------S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~ 107 (684)
T 4gmo_A 34 DKILPVLKDLK------SPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE 107 (684)
T ss_dssp HTTHHHHHHHS------SSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHcC------CCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 35666778888 778999999999999999877788888887654444556788899999999999999998653
Q ss_pred --CchhhhhccCChHHHHHHhhhcC---------------------HhHHHHHHHHHHHhccCCch-hHHHHhhCchHHH
Q 020640 153 --SNKEVIGKSGALKPLIDLLDEGH---------------------QSAMKDVASAIFNLCITHEN-KARAVRDGGVSVI 208 (323)
Q Consensus 153 --~~~~~i~~~g~i~~Lv~lL~~~~---------------------~~~~~~al~aL~~L~~~~~~-~~~i~~~g~v~~L 208 (323)
+.+..+.+.|++++|..+++... ..+...++.+|++||.+++. ...+...|+++.|
T Consensus 108 g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l 187 (684)
T 4gmo_A 108 EADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRL 187 (684)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHH
T ss_pred CchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHH
Confidence 56788899999999999986410 12455788999999987754 4466777999999
Q ss_pred HHHhhcC-----chHHHHHHHHHHHhcC-HHHHHHHHhcCC---HHHHHHHHhccCChhHHHHHHHHHHHhc
Q 020640 209 LKKIMDG-----VHVDELLAILAMLSTN-HRAVEEIGDLGG---VSCMLRIIRESTCDRNKENCIAILHTIC 271 (323)
Q Consensus 209 v~ll~~~-----~~~~~a~~~L~~l~~~-~~~~~~i~~~g~---i~~Lv~ll~~~~~~~~~~~a~~~L~~L~ 271 (323)
+..|.+. +++..++.+|..++.+ ++....+.+.|. ...+..+.+ +. +..+..++++|.|+.
T Consensus 188 ~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~~-~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 188 LFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-GT-DPRAVMACGVLHNVF 257 (684)
T ss_dssp HHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-SS-CTTHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-CC-cHHHHHHHHHHHhHh
Confidence 9988532 5788999999999995 677777777764 333333334 33 666888999999974
No 50
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.14 E-value=5.2e-10 Score=110.11 Aligned_cols=191 Identities=15% Similarity=0.172 Sum_probs=149.5
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHH-HhhhcCHhHHHHHHHHHHHhccCC--chhHH
Q 020640 122 VIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLID-LLDEGHQSAMKDVASAIFNLCITH--ENKAR 198 (323)
Q Consensus 122 ~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~al~aL~~L~~~~--~~~~~ 198 (323)
+.| ++..|++++++.+..|+++|.+|+.+++++..+...|++..++. +|.+.+..++..|+++|+||+... +.+..
T Consensus 36 i~P-ll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~ 114 (684)
T 4gmo_A 36 ILP-VLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH 114 (684)
T ss_dssp THH-HHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHH-HHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence 455 66789999999999999999999988788888888888887655 688889999999999999998754 67888
Q ss_pred HHhhCchHHHHHHhhcC-----------------------chHHHHHHHHHHHhc-CHHHHHHHHhcCCHHHHHHHHhcc
Q 020640 199 AVRDGGVSVILKKIMDG-----------------------VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRES 254 (323)
Q Consensus 199 i~~~g~v~~Lv~ll~~~-----------------------~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~ll~~~ 254 (323)
+++.|++++|..+++.. .+.+.++.+|++||. .++....+.+.|+++.|+..+...
T Consensus 115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~ 194 (684)
T 4gmo_A 115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISA 194 (684)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhc
Confidence 99999999999988531 123567889999997 467777888889999999888543
Q ss_pred C--ChhHHHHHHHHHHHhcccChHhHHHHHhhccc---HHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640 255 T--CDRNKENCIAILHTICLSDRTKWKAMREEEST---HGTISKLAQDGTARAKRKATGILERLKR 315 (323)
Q Consensus 255 ~--~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~---i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 315 (323)
+ ...++..|+.+|+.++.+++.....+. +.+. ...+..+.. .++..+..++++|.|+..
T Consensus 195 ~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~-~~~~~~~~~~ll~~~~-~~~~~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 195 DIAPQDIYEEAISCLTTLSEDNLKVGQAIT-DDQETHVYDVLLKLAT-GTDPRAVMACGVLHNVFT 258 (684)
T ss_dssp CCSCHHHHHHHHHHHHHHHTTCHHHHHHHH-TCCSSCHHHHHHHHHH-SSCTTHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhccCHHHHHHHH-hcchHHHHHHHHHHhc-CCcHHHHHHHHHHHhHhh
Confidence 2 257899999999999999987554554 3443 334444434 344457788899999853
No 51
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.11 E-value=1.6e-09 Score=100.76 Aligned_cols=272 Identities=12% Similarity=0.107 Sum_probs=184.0
Q ss_pred hhHHHHHHHHhc-C--CchhHHHHHHHHHHHhccC-hhhHHHHhhhcCCHHHHHHhhcccccCCCC--CHHHHHHHHHHH
Q 020640 30 RDHFLSLLKKMS-A--TLPDQTEAAKELRLLTKRM-PSFRALFGESHDAIPQLLSPLSESKCENGI--NPNLQEDVITTL 103 (323)
Q Consensus 30 ~~~i~~Lv~~l~-~--~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~--~~~~~~~a~~~L 103 (323)
.+.++.|+..+. + ++..+..|+.+|..++... ++.-..... ..++.++..|. ++ ++.++..|+.++
T Consensus 127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~--~ll~~l~~~l~------~~~~~~~vr~~a~~~l 198 (462)
T 1ibr_B 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSN--EILTAIIQGMR------KEEPSNNVKLAATNAL 198 (462)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHH--HHHHHHHHHHS------TTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHH--HHHHHHHHHhC------CCCCCHHHHHHHHHHH
Confidence 368888999995 4 7788999999999999643 221111222 36677778887 44 789999999999
Q ss_pred HHhccccc-hh-hhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCch-hhhhccCChHHHHHHhhhcCHhHHH
Q 020640 104 LNLSIHDN-NK-KLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNK-EVIGKSGALKPLIDLLDEGHQSAMK 180 (323)
Q Consensus 104 ~~ls~~~~-~~-~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~ 180 (323)
.++...-. +. ...... -+++.+...+.+.+++++..++.+|..++...... ......++++.++..+.+.++.++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~ 277 (462)
T 1ibr_B 199 LNSLEFTKANFDKESERH-FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVAL 277 (462)
T ss_dssp HHHTTTTHHHHTSHHHHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHhhhhhHHHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence 98643211 11 011111 13555666677789999999999999997533211 1111116788888888888999999
Q ss_pred HHHHHHHHhccCCc------------------hhHHHHh---hCchHHHHHHhhcC---------chHHHHHHHHHHHhc
Q 020640 181 DVASAIFNLCITHE------------------NKARAVR---DGGVSVILKKIMDG---------VHVDELLAILAMLST 230 (323)
Q Consensus 181 ~al~aL~~L~~~~~------------------~~~~i~~---~g~v~~Lv~ll~~~---------~~~~~a~~~L~~l~~ 230 (323)
.++.++.+++.... ....+++ ...++.++..+.+. .++..|+.+|..++.
T Consensus 278 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~ 357 (462)
T 1ibr_B 278 QGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLAT 357 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHH
Confidence 99999988875420 0011111 23566677777421 578889999988887
Q ss_pred CHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccCh-HhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHH
Q 020640 231 NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR-TKWKAMREEESTHGTISKLAQDGTARAKRKATGI 309 (323)
Q Consensus 231 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~ 309 (323)
.-. +.+. ..+++.+...+.+. +..+++.|+.++..++.... ......+ ..+++.|+..+.+.++.++..|+++
T Consensus 358 ~~~--~~~~-~~~~~~l~~~l~~~-~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~ 431 (462)
T 1ibr_B 358 CCE--DDIV-PHVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWT 431 (462)
T ss_dssp HTT--TTHH-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred hcc--HHHH-HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 311 1222 13466777777754 48899999999999997543 2122222 4789999999999999999999999
Q ss_pred HHHHhcc
Q 020640 310 LERLKRT 316 (323)
Q Consensus 310 L~~l~~~ 316 (323)
|.+++..
T Consensus 432 l~~~~~~ 438 (462)
T 1ibr_B 432 VGRICEL 438 (462)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999974
No 52
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.09 E-value=4.5e-09 Score=101.77 Aligned_cols=263 Identities=11% Similarity=0.051 Sum_probs=180.0
Q ss_pred hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640 31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 109 (323)
Q Consensus 31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~ 109 (323)
..++.+.+.+. .++.+|..|+.++.++...+++. +.+ .+.++.|..+|. ++++.++..|+.+|..++..
T Consensus 121 ~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~-~~~~~~l~~lL~------d~d~~V~~~A~~aL~~i~~~ 190 (591)
T 2vgl_B 121 YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VED-QGFLDSLRDLIA------DSNPMVVANAVAALSEISES 190 (591)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHH-HHHHHHHHHTTS------CSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---ccc-ccHHHHHHHHhC------CCChhHHHHHHHHHHHHHhh
Confidence 45666777775 66899999999999999866652 233 467899999998 78999999999999999876
Q ss_pred cchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHh
Q 020640 110 DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNL 189 (323)
Q Consensus 110 ~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L 189 (323)
......+.-..+.+..|+..+...++-.+...++++..++..++.. ....++.+..++++.++.++..|++++..+
T Consensus 191 ~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l 266 (591)
T 2vgl_B 191 HPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKF 266 (591)
T ss_dssp CCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHS
T ss_pred CCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 5422111111124666777777888888888888888776433211 134677788888888899999999999998
Q ss_pred ccC----CchhHHHHhhCchHHHHHHhhcC-chHHHHHHHHHHHhc-CH------------------HHHHHHH------
Q 020640 190 CIT----HENKARAVRDGGVSVILKKIMDG-VHVDELLAILAMLST-NH------------------RAVEEIG------ 239 (323)
Q Consensus 190 ~~~----~~~~~~i~~~g~v~~Lv~ll~~~-~~~~~a~~~L~~l~~-~~------------------~~~~~i~------ 239 (323)
... .+....+. ....+.|+.++.++ +++..++..|..+.. ++ ..|..-.
T Consensus 267 ~~~~~~~~~~~~~~~-~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l 345 (591)
T 2vgl_B 267 LELLPKDSDYYNMLL-KKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRL 345 (591)
T ss_dssp CCSCCBTTBSHHHHH-HHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHT
T ss_pred hhccCCCHHHHHHHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHH
Confidence 742 23222222 34567777766544 677778887777764 11 1222211
Q ss_pred -hcC----CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 020640 240 -DLG----GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK 314 (323)
Q Consensus 240 -~~g----~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~ 314 (323)
+.. +++.|..++++.+ +..+..++.++..++...+.. ...+++.|++++...++.+...+...+..+.
T Consensus 346 ~~~~nv~~iv~~L~~~l~~~d-~~~r~~~v~aI~~la~~~~~~------~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii 418 (591)
T 2vgl_B 346 ASQANIAQVLAELKEYATEVD-VDFVRKAVRAIGRCAIKVEQS------AERCVSTLLDLIQTKVNYVVQEAIVVIRDIF 418 (591)
T ss_dssp CCSSTHHHHHHHHHHHTTSSC-HHHHHHHHHHHHHHHTTCHHH------HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHhChhH------HHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 222 3445555555444 889999999999999876532 1346788888888888888777777777765
Q ss_pred c
Q 020640 315 R 315 (323)
Q Consensus 315 ~ 315 (323)
+
T Consensus 419 ~ 419 (591)
T 2vgl_B 419 R 419 (591)
T ss_dssp H
T ss_pred H
Confidence 4
No 53
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.07 E-value=1.4e-08 Score=97.45 Aligned_cols=263 Identities=11% Similarity=0.043 Sum_probs=178.0
Q ss_pred hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640 31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 109 (323)
Q Consensus 31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~ 109 (323)
..++.|...+. ++..+|..|..+|.+++...+. ..+ . ...++.+..+.. +++...+..++.++..++..
T Consensus 87 ~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~--~~~-~-~~l~~~l~~l~~------~~~~~~R~~a~~~l~~~~~~ 156 (588)
T 1b3u_A 87 CLLPPLESLATVEETVVRDKAVESLRAISHEHSP--SDL-E-AHFVPLVKRLAG------GDWFTSRTSACGLFSVCYPR 156 (588)
T ss_dssp GGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH--HHH-H-HTHHHHHHHHHT------CSSHHHHHHHGGGHHHHTTT
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCH--HHH-H-HHHHHHHHHHhc------CCCcHHHHHHHHHHHHHHHh
Confidence 45666665554 5577888899999888865442 122 2 234555555555 56788888888888877654
Q ss_pred cchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHh
Q 020640 110 DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNL 189 (323)
Q Consensus 110 ~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L 189 (323)
-... ... .+++.+..+++++++.++..++.+|..++..-... ......++.+..++.+++..++..|+.+|..+
T Consensus 157 ~~~~--~~~--~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l 230 (588)
T 1b3u_A 157 VSSA--VKA--ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNI 230 (588)
T ss_dssp SCHH--HHH--HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHH
T ss_pred cCHH--HHH--HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 3321 122 26777888888999999999999999997543321 12345788899999988999999999999998
Q ss_pred ccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHH
Q 020640 190 CITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAIL 267 (323)
Q Consensus 190 ~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L 267 (323)
+...+.. ......++.+..++.+. .++..++.+|..++..-.. .......++.++.++++.+ +.++..|+.+|
T Consensus 231 ~~~~~~~--~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l 305 (588)
T 1b3u_A 231 AQLLPQE--DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCE-AEVRAAASHKV 305 (588)
T ss_dssp HHHSCHH--HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCSS-HHHHHHHHHHH
T ss_pred HHhCCHH--HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCCCc-HHHHHHHHHHH
Confidence 7644321 12234777888888776 5789999999988863111 1223456889999998654 88999999999
Q ss_pred HHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 020640 268 HTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK 314 (323)
Q Consensus 268 ~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~ 314 (323)
..++..-+............++.+..++.+.++.++..+.++|..++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~ 352 (588)
T 1b3u_A 306 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLS 352 (588)
T ss_dssp HHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGH
T ss_pred HHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 99887543211100001356666667777667777777766666654
No 54
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.07 E-value=4.5e-09 Score=100.84 Aligned_cols=261 Identities=14% Similarity=0.082 Sum_probs=186.8
Q ss_pred hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640 31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 109 (323)
Q Consensus 31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~ 109 (323)
..+|.+.+.++ .++.+|..++.+|..++..-. .... . ...+|.+..+++ ++++.++..++.+|..+...
T Consensus 324 ~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~--~~~~-~-~~l~p~l~~~l~------d~~~~Vr~~a~~~l~~l~~~ 393 (588)
T 1b3u_A 324 QILPCIKELVSDANQHVKSALASVIMGLSPILG--KDNT-I-EHLLPLFLAQLK------DECPEVRLNIISNLDCVNEV 393 (588)
T ss_dssp THHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC--HHHH-H-HHTHHHHHHHHT------CSCHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh--HhHH-H-HHHHHHHHHHhC------CCchHHHHHHHHHHHHHHHh
Confidence 46666777775 558889999999888874321 1122 2 357888889888 77899999999888877543
Q ss_pred cchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHh
Q 020640 110 DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNL 189 (323)
Q Consensus 110 ~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L 189 (323)
-.. ..... .++|.+..++++.+..++..++.++..++..-.. .......++.++.++.+++..++..|+.+|..+
T Consensus 394 ~~~-~~~~~--~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l 468 (588)
T 1b3u_A 394 IGI-RQLSQ--SLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKL 468 (588)
T ss_dssp SCH-HHHHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG--GGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred cCH-HHHHH--HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 221 11222 3688888888888999999999999998742111 122334678888999998999999999999998
Q ss_pred ccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHH
Q 020640 190 CITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAIL 267 (323)
Q Consensus 190 ~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L 267 (323)
+....... .....++.|..++.+. .++..++.++..++..-. .......+++.|+..+++.. +.++..++.+|
T Consensus 469 ~~~~~~~~--~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~~l~d~~-~~Vr~~a~~~l 543 (588)
T 1b3u_A 469 VEKFGKEW--AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG--QDITTKHMLPTVLRMAGDPV-ANVRFNVAKSL 543 (588)
T ss_dssp HHHHCHHH--HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH--HHHHHHHTHHHHHHGGGCSC-HHHHHHHHHHH
T ss_pred HHHhCchh--HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhhCCCCC-chHHHHHHHHH
Confidence 76433221 2234777788777665 578888999988876311 11233457888999888654 88999999999
Q ss_pred HHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640 268 HTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 315 (323)
Q Consensus 268 ~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 315 (323)
..++..-.. ... ...+++.|.+++.+.+..++..|..+|..+.+
T Consensus 544 ~~l~~~~~~---~~~-~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~~ 587 (588)
T 1b3u_A 544 QKIGPILDN---STL-QSEVKPILEKLTQDQDVDVKYFAQEALTVLSL 587 (588)
T ss_dssp HHHGGGSCH---HHH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhch---hhh-HHHHHHHHHHHcCCCchhHHHHHHHHHHHhhc
Confidence 999875432 222 24677888888888899999999999988753
No 55
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.98 E-value=1.5e-08 Score=98.05 Aligned_cols=255 Identities=13% Similarity=0.167 Sum_probs=173.6
Q ss_pred HHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcccc
Q 020640 32 HFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD 110 (323)
Q Consensus 32 ~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~ 110 (323)
..+.+++.++ .+...|.-+...+..++..+++.. .-++..+.+-|. ++++.++..|+.+|.++..
T Consensus 50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~------~l~~n~l~kdL~------~~n~~ir~~AL~~L~~i~~-- 115 (591)
T 2vgl_B 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA------IMAVNSFVKDCE------DPNPLIRALAVRTMGCIRV-- 115 (591)
T ss_dssp GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH------HTTHHHHGGGSS------SSSHHHHHHHHHHHHTCCS--
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH------HHHHHHHHHHcC------CCCHHHHHHHHHHHHcCCh--
Confidence 4455666554 456666667777777765444321 124566777677 7789999999999988852
Q ss_pred chhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhc
Q 020640 111 NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLC 190 (323)
Q Consensus 111 ~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~ 190 (323)
..+.. .+++.+..++.+.++.+++.|+.++..+....+. .+.+.+.++.|.++|.++++.++..|+.+|..++
T Consensus 116 ---~~~~~--~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~--~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~ 188 (591)
T 2vgl_B 116 ---DKITE--YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ--MVEDQGFLDSLRDLIADSNPMVVANAVAALSEIS 188 (591)
T ss_dssp ---GGGHH--HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC--CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHT
T ss_pred ---HHHHH--HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh--hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence 11322 1466788899999999999999999999753322 2222568899999999999999999999999998
Q ss_pred cCCchhH-HHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHH
Q 020640 191 ITHENKA-RAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAI 266 (323)
Q Consensus 191 ~~~~~~~-~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~ 266 (323)
..+.... .-...+.+..|+..+.+. -.+...+.+|..++.. ++... ..++.+..++++. ++.++..|+.+
T Consensus 189 ~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l~~~-~~~V~~ea~~~ 262 (591)
T 2vgl_B 189 ESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRLSHA-NSAVVLSAVKV 262 (591)
T ss_dssp TSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCSCSS-TTHHHHHHHHH
T ss_pred hhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHHcCC-ChHHHHHHHHH
Confidence 8764221 101123456677766654 3456667777777653 22222 3456677777754 48899999999
Q ss_pred HHHhcc---cChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640 267 LHTICL---SDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 316 (323)
Q Consensus 267 L~~L~~---~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 316 (323)
+..+.. .+++..+.+. ....+.|+.++. ++++++.-|...|..+...
T Consensus 263 i~~l~~~~~~~~~~~~~~~--~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~ 312 (591)
T 2vgl_B 263 LMKFLELLPKDSDYYNMLL--KKLAPPLVTLLS-GEPEVQYVALRNINLIVQK 312 (591)
T ss_dssp HHHSCCSCCBTTBSHHHHH--HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccCCCHHHHHHHH--HHHHHHHHHHhc-CCccHHHHHHHHHHHHHHh
Confidence 999874 2333344433 356778887664 7899999999999888753
No 56
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.86 E-value=1.7e-07 Score=91.08 Aligned_cols=143 Identities=11% Similarity=0.029 Sum_probs=104.2
Q ss_pred hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640 31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 109 (323)
Q Consensus 31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~ 109 (323)
-+++.+.+-+. .++.+|..|+.+|.++.. ++ +.+ ..++.+.++|. +.++.++..|+.++.++...
T Consensus 107 l~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~----~~~--~l~~~l~~~L~------~~~~~VRk~A~~al~~l~~~ 172 (618)
T 1w63_A 107 LMTNCIKNDLNHSTQFVQGLALCTLGCMGS--SE----MCR--DLAGEVEKLLK------TSNSYLRKKAALCAVHVIRK 172 (618)
T ss_dssp HHHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HH----HHH--HHHHHHHHHHH------SCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HH----HHH--HHHHHHHHHHc------CCCHHHHHHHHHHHHHHHHH
Confidence 35666777774 568888899999999873 32 222 45777888888 77899999999999998764
Q ss_pred cchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhh---------------c
Q 020640 110 DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE---------------G 174 (323)
Q Consensus 110 ~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~---------------~ 174 (323)
... .+. ++++.+..++.+.++.++..|+.+|..++..+....... ...++.++++|.+ .
T Consensus 173 ~p~---~v~--~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~-~~~v~~l~~~L~~~~~~~~~~~~~~~~~~ 246 (618)
T 1w63_A 173 VPE---LME--MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF-RKLVPQLVRILKNLIMSGYSPEHDVSGIS 246 (618)
T ss_dssp CGG---GGG--GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH-HTTHHHHHHHHHHHHHSCCCTTTCSSSSS
T ss_pred ChH---HHH--HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH-HHHHHHHHHHHHHHHcCCCCccccccCCC
Confidence 322 222 367777888889999999999999999986532211111 3578888887764 3
Q ss_pred CHhHHHHHHHHHHHhccCC
Q 020640 175 HQSAMKDVASAIFNLCITH 193 (323)
Q Consensus 175 ~~~~~~~al~aL~~L~~~~ 193 (323)
++-.+...+++|..++..+
T Consensus 247 ~~~~q~~il~~L~~l~~~~ 265 (618)
T 1w63_A 247 DPFLQVRILRLLRILGRND 265 (618)
T ss_dssp CHHHHHHHHHHHHHHTTTC
T ss_pred CChHHHHHHHHHHHhCCCC
Confidence 6777888888888888765
No 57
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.83 E-value=8.4e-08 Score=96.28 Aligned_cols=265 Identities=10% Similarity=0.092 Sum_probs=176.5
Q ss_pred HHHHHhc-CCchhHHHHHHHHHHHhccCh-hhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccch
Q 020640 35 SLLKKMS-ATLPDQTEAAKELRLLTKRMP-SFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNN 112 (323)
Q Consensus 35 ~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~ 112 (323)
.+.+.+. .++..|..|+.++..++.... +.-..... ..++.|++.+. ++++.++..++.++..++..-..
T Consensus 373 ~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~--~il~~l~~~l~------d~~~~vr~~a~~~l~~l~~~~~~ 444 (861)
T 2bpt_A 373 FVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH--QALPSILNLMN------DQSLQVKETTAWCIGRIADSVAE 444 (861)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH--HHHHHHHHGGG------CSCHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHHHHHcC------CCcHHHHHHHHHHHHHHHHHhhh
Confidence 3334443 457889999999999996432 22222233 36788888887 77899999999999888753211
Q ss_pred ---hhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC--chhhhhc--cCChHHHHHHhhhcC--HhHHHHHH
Q 020640 113 ---KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS--NKEVIGK--SGALKPLIDLLDEGH--QSAMKDVA 183 (323)
Q Consensus 113 ---~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~--~~~~i~~--~g~i~~Lv~lL~~~~--~~~~~~al 183 (323)
...... .+++.++..+++. +.++..++++|.+++..-. ....+.. ..+++.|++.+.+.+ ..++..++
T Consensus 445 ~~~~~~~~~--~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~ 521 (861)
T 2bpt_A 445 SIDPQQHLP--GVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAF 521 (861)
T ss_dssp GSCTTTTHH--HHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHH
T ss_pred hcCCHHHHH--HHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHH
Confidence 112222 2677788888775 8999999999999874311 0111111 346788888887533 68899999
Q ss_pred HHHHHhccCCchh-HHHHhhCchHHHHHHhhcC-----------------chHHHHHHHHHHHhcC-HH-HHHHHHhcCC
Q 020640 184 SAIFNLCITHENK-ARAVRDGGVSVILKKIMDG-----------------VHVDELLAILAMLSTN-HR-AVEEIGDLGG 243 (323)
Q Consensus 184 ~aL~~L~~~~~~~-~~i~~~g~v~~Lv~ll~~~-----------------~~~~~a~~~L~~l~~~-~~-~~~~i~~~g~ 243 (323)
.+|..++...... ...+. ..++.++..+.+. .++..++.+|.+++.. +. .... -...
T Consensus 522 ~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~l 598 (861)
T 2bpt_A 522 SALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPV--ADML 598 (861)
T ss_dssp HHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGG--HHHH
T ss_pred HHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHH--HHHH
Confidence 9999997755332 22222 3566666666421 3456788888888763 22 1111 1145
Q ss_pred HHHHHHHHhccCCh-hHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640 244 VSCMLRIIRESTCD-RNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 316 (323)
Q Consensus 244 i~~Lv~ll~~~~~~-~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 316 (323)
++.++.+++..+ . .+++.++.++..++..........+ ..+++.|.+.+.+.++.++..|..++..+.+.
T Consensus 599 ~~~l~~~l~~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~ 669 (861)
T 2bpt_A 599 MGLFFRLLEKKD-SAFIEDDVFYAISALAASLGKGFEKYL--ETFSPYLLKALNQVDSPVSITAVGFIADISNS 669 (861)
T ss_dssp HHHHHHHHHSTT-GGGTHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCC-CCcHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 777888888654 5 7899999999998876544444444 35889999999877888999999998888754
No 58
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.82 E-value=1.2e-06 Score=85.22 Aligned_cols=249 Identities=9% Similarity=0.040 Sum_probs=178.9
Q ss_pred hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640 31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 109 (323)
Q Consensus 31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~ 109 (323)
..++.+.+.+. .++.+|..|+.++.++...+++.. .+.++.+.++|. +.|+.++..|+.+|..++..
T Consensus 142 ~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v------~~~~~~l~~lL~------D~d~~V~~~Al~~L~~i~~~ 209 (618)
T 1w63_A 142 DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM------EMFLPATKNLLN------EKNHGVLHTSVVLLTEMCER 209 (618)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG------GGGGGGTTTSTT------CCCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH------HHHHHHHHHHhC------CCCHhHHHHHHHHHHHHHHh
Confidence 45677777775 679999999999999998777543 256777888888 78999999999999999865
Q ss_pred cchhhhhhccCCcHHHHHHHHhc---------------CCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhh-
Q 020640 110 DNNKKLVAETPMVIPLLMDALRS---------------GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE- 173 (323)
Q Consensus 110 ~~~~~~i~~~~g~i~~Lv~ll~~---------------~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~- 173 (323)
+........ .+++.++.+|+. .++-.+...+.+|..++..+... ....++.|..++..
T Consensus 210 ~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~----~~~~~~~L~~l~~~~ 283 (618)
T 1w63_A 210 SPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS----SEAMNDILAQVATNT 283 (618)
T ss_dssp HHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH----HHTTHHHHHHHHHTS
T ss_pred ChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHhcc
Confidence 432222222 268888887763 37888888999999998654321 12345566666542
Q ss_pred -----cCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHH
Q 020640 174 -----GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSC 246 (323)
Q Consensus 174 -----~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~ 246 (323)
.+..+...|++++..+...++ +.. .+++.|..++.++ .++..++..|..++... ..+++ .....
T Consensus 284 ~~~~~~~~aV~~ea~~~i~~l~~~~~----l~~-~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~---p~~~~-~~~~~ 354 (618)
T 1w63_A 284 ETSKNVGNAILYETVLTIMDIKSESG----LRV-LAINILGRFLLNNDKNIRYVALTSLLKTVQTD---HNAVQ-RHRST 354 (618)
T ss_dssp CCSSTHHHHHHHHHHHHHHHSCCCHH----HHH-HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHH---HHHHG-GGHHH
T ss_pred ccccchHHHHHHHHHHHHHhcCCCHH----HHH-HHHHHHHHHHhCCCCchHHHHHHHHHHHHhhC---HHHHH-HHHHH
Confidence 245788899999988754321 221 3667888888755 78999999999988732 12222 24567
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640 247 MLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 315 (323)
Q Consensus 247 Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 315 (323)
++..+.+.+ ..++..|+.+|..++.... ... .+..|.+.+.+.+++.+..+...+..++.
T Consensus 355 i~~~l~d~d-~~Ir~~alelL~~l~~~~n--v~~------iv~eL~~~l~~~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 355 IVDCLKDLD-VSIKRRAMELSFALVNGNN--IRG------MMKELLYFLDSCEPEFKADCASGIFLAAE 414 (618)
T ss_dssp HHHGGGSSC-HHHHHHHHHHHHHHCCSSS--THH------HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCC-hhHHHHHHHHHHHHccccc--HHH------HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 778888554 8899999999999988652 223 34667777778889999999999998885
No 59
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.76 E-value=8.3e-07 Score=89.20 Aligned_cols=272 Identities=12% Similarity=0.129 Sum_probs=181.0
Q ss_pred hHHHHHHHHhc-C--CchhHHHHHHHHHHHhccChhhHHHHhh-hcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640 31 DHFLSLLKKMS-A--TLPDQTEAAKELRLLTKRMPSFRALFGE-SHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 106 (323)
Q Consensus 31 ~~i~~Lv~~l~-~--~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l 106 (323)
+.++.++..+. + ++..|..++.++..++..-.. ..+.. ....++.+...+... +.+..++..|+.++.++
T Consensus 128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~l~~~----~~~~~vr~~a~~~l~~~ 201 (876)
T 1qgr_A 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKE----EPSNNVKLAATNALLNS 201 (876)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTT----CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHhhcCC----CCCHHHHHHHHHHHHHH
Confidence 57788888885 4 677899999999999864211 11111 023456666767621 12688999999999987
Q ss_pred ccccc-h-hhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-CchhhhhccCChHHHHHHhhhcCHhHHHHHH
Q 020640 107 SIHDN-N-KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSAMKDVA 183 (323)
Q Consensus 107 s~~~~-~-~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al 183 (323)
...-. + ....... .+++.+...+.+.+.+++..++.+|..+.... +.-........++.++..+.+.++.++..++
T Consensus 202 ~~~~~~~~~~~~~~~-~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al 280 (876)
T 1qgr_A 202 LEFTKANFDKESERH-FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGI 280 (876)
T ss_dssp GGGCHHHHTSHHHHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHHHHHhHHHHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 64211 1 0111111 15666777777788999999999999997432 2111222236788888888888889999999
Q ss_pred HHHHHhccCCc---------------------hh-HHHHhhCchHHHHHHhhc-------C--chHHHHHHHHHHHhcCH
Q 020640 184 SAIFNLCITHE---------------------NK-ARAVRDGGVSVILKKIMD-------G--VHVDELLAILAMLSTNH 232 (323)
Q Consensus 184 ~aL~~L~~~~~---------------------~~-~~i~~~g~v~~Lv~ll~~-------~--~~~~~a~~~L~~l~~~~ 232 (323)
.++.+++.... .. ...+ ...++.++..+.. . .++..+..+|..++..-
T Consensus 281 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~ 359 (876)
T 1qgr_A 281 EFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC 359 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHC
Confidence 99988875420 00 0011 2356677777742 1 57888888888887632
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccCh-HhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHH
Q 020640 233 RAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR-TKWKAMREEESTHGTISKLAQDGTARAKRKATGILE 311 (323)
Q Consensus 233 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~ 311 (323)
. ..++. .+++.+...+.+. +..+++.|+.++..++.... +.....+ ...++.|+..+.+.++.++..|.++|.
T Consensus 360 ~--~~~~~-~~l~~l~~~l~~~-~~~~r~~a~~~l~~i~~~~~~~~~~~~~--~~~l~~l~~~l~d~~~~vr~~a~~~l~ 433 (876)
T 1qgr_A 360 E--DDIVP-HVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVG 433 (876)
T ss_dssp G--GGGHH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred c--HhhHH-HHHHHHHHHccCC-ChHHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 1 11111 3456666666654 48899999999999998653 3333433 458899999999999999999999999
Q ss_pred HHhcc
Q 020640 312 RLKRT 316 (323)
Q Consensus 312 ~l~~~ 316 (323)
+++..
T Consensus 434 ~~~~~ 438 (876)
T 1qgr_A 434 RICEL 438 (876)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99975
No 60
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.76 E-value=1.4e-07 Score=94.82 Aligned_cols=269 Identities=11% Similarity=0.085 Sum_probs=173.2
Q ss_pred HHHHHHHhc-CCchhHHHHHHHHHHHhccCh-hhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcccc
Q 020640 33 FLSLLKKMS-ATLPDQTEAAKELRLLTKRMP-SFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD 110 (323)
Q Consensus 33 i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~ 110 (323)
++.+...+. .++.+|..|+.++..++.... +....... ..++.++..|. ++++.++..|+.+|.+++..-
T Consensus 368 l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~--~~l~~l~~~l~------d~~~~vr~~a~~~l~~~~~~~ 439 (876)
T 1qgr_A 368 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVI--QAMPTLIELMK------DPSVVVRDTAAWTVGRICELL 439 (876)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH--HHHHHHHHHHT------CSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHhC
Confidence 344444453 558889999999999996543 22222333 47888999998 778999999999999987643
Q ss_pred ch---hhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC------------chhhhhc--cCChHHHHHHhhh
Q 020640 111 NN---KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS------------NKEVIGK--SGALKPLIDLLDE 173 (323)
Q Consensus 111 ~~---~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~------------~~~~i~~--~g~i~~Lv~lL~~ 173 (323)
.. ...... .+++.++..+.+. +.++..++++|.+++.... ....+.. ..+++.|+..+..
T Consensus 440 ~~~~~~~~~l~--~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~ 516 (876)
T 1qgr_A 440 PEAAINDVYLA--PLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDR 516 (876)
T ss_dssp GGGTSSTTTHH--HHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTS
T ss_pred chhcccHHHHH--HHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhC
Confidence 22 112222 2577778888774 8899999999999974311 0011111 3467777777765
Q ss_pred c---CHhHHHHHHHHHHHhccCCc-hhHHHHhhCchHHHHHHhhc----------C-------chHHHHHHHHHHHhcCH
Q 020640 174 G---HQSAMKDVASAIFNLCITHE-NKARAVRDGGVSVILKKIMD----------G-------VHVDELLAILAMLSTNH 232 (323)
Q Consensus 174 ~---~~~~~~~al~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~----------~-------~~~~~a~~~L~~l~~~~ 232 (323)
. +..++..+..+|..++.... .....+. ..++.++..+.. . .++..++.++..++..-
T Consensus 517 ~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~ 595 (876)
T 1qgr_A 517 PDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQ-KTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKV 595 (876)
T ss_dssp CSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHH-HHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cCcchhhHHHHHHHHHHHHHHHCchhhHHHHH-HHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 35677788888888866443 2222222 355566655542 1 23566788888887631
Q ss_pred HHHHHHH--hcCCHHHHHHHHhccCC-hhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcC-CHHHHHHHHH
Q 020640 233 RAVEEIG--DLGGVSCMLRIIRESTC-DRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG-TARAKRKATG 308 (323)
Q Consensus 233 ~~~~~i~--~~g~i~~Lv~ll~~~~~-~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~A~~ 308 (323)
.. ..+. -..+++.++.+++...+ ..+++.++.++..++..........+ ..+++.|...+.+. ++.++..|.+
T Consensus 596 ~~-~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~vr~~a~~ 672 (876)
T 1qgr_A 596 QH-QDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYM--EAFKPFLGIGLKNYAEYQVCLAAVG 672 (876)
T ss_dssp CH-HHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred Ch-hhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHHcCcchHHHHHHHHH
Confidence 10 1121 12467778888875421 36899999999999875433333433 24788888888887 8999999999
Q ss_pred HHHHHhcc
Q 020640 309 ILERLKRT 316 (323)
Q Consensus 309 ~L~~l~~~ 316 (323)
++..+.+.
T Consensus 673 ~l~~l~~~ 680 (876)
T 1qgr_A 673 LVGDLCRA 680 (876)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 61
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.71 E-value=4.4e-08 Score=102.55 Aligned_cols=269 Identities=12% Similarity=0.056 Sum_probs=184.2
Q ss_pred hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640 31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 109 (323)
Q Consensus 31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~ 109 (323)
..++.+++.+. .|.++|..|...|.+........-..-.. ...++.|++.|. +.++.++..|+.+|..++..
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~-~~il~~Ll~~L~------d~~~~vR~~A~~~L~~l~~~ 78 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSE-RKVVKMILKLLE------DKNGEVQNLAVKCLGPLVSK 78 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHH-HHHHHHHHHHTT------CSSHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHH-HHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHHh
Confidence 46778888884 77899999999998876432110000011 235677888887 77899999999999998754
Q ss_pred cchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCch------hhhhccCChHHHHHHhh-hcCHhHHHHH
Q 020640 110 DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNK------EVIGKSGALKPLIDLLD-EGHQSAMKDV 182 (323)
Q Consensus 110 ~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~------~~i~~~g~i~~Lv~lL~-~~~~~~~~~a 182 (323)
-.. .... .+++.++..+.++++.++..++.+|..++..-... ..-.-...++.|++.+. +++..++..|
T Consensus 79 ~~~--~~~~--~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~a 154 (1230)
T 1u6g_C 79 VKE--YQVE--TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEA 154 (1230)
T ss_dssp SCH--HHHH--HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHH
T ss_pred CCH--HHHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHH
Confidence 322 1222 25677888888888889999999999887432211 01112457889999998 4788999999
Q ss_pred HHHHHHhccCCch-hHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhH
Q 020640 183 ASAIFNLCITHEN-KARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRN 259 (323)
Q Consensus 183 l~aL~~L~~~~~~-~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~ 259 (323)
+.+|..++..... -.... ...++.++..+.++ .++..++.+|..++..... .+. ...++.++..+....+...
T Consensus 155 l~~l~~~~~~~~~~l~~~~-~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~--~~~-~~~l~~l~~~L~~~~~~~~ 230 (1230)
T 1u6g_C 155 LDIMADMLSRQGGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IVF-VDLIEHLLSELSKNDSMST 230 (1230)
T ss_dssp HHHHHHHHHHTCSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C-TTHHHHHHHHHHHTCSSCS
T ss_pred HHHHHHHHHHhHhHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH--HHH-HHHHHHHHHHhccCCchhH
Confidence 9999999753211 00011 12455566666655 6799999999999885221 122 2468889988876543467
Q ss_pred HHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640 260 KENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 316 (323)
Q Consensus 260 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 316 (323)
+..++.++..++...+......+ ...++.+++.+.+.++.+++.|..++..+.+.
T Consensus 231 r~~a~~~l~~l~~~~~~~~~~~l--~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 231 TRTYIQCIAAISRQAGHRIGEYL--EKIIPLVVKFCNVDDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp CTTHHHHHHHHHHHSSGGGTTSC--TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 78889999888876544333322 46899999999888999999999999988764
No 62
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.67 E-value=4.3e-07 Score=91.09 Aligned_cols=268 Identities=10% Similarity=0.109 Sum_probs=175.9
Q ss_pred hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhh--HHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640 31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSF--RALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 107 (323)
Q Consensus 31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~--~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls 107 (323)
..++.++..+. .++.+|..+++++.+++..-... ..... ...++.|++.|. ++ +.++..++.+|.+++
T Consensus 411 ~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~l~~l~~~l~------~~-~~v~~~a~~al~~l~ 481 (861)
T 2bpt_A 411 QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL--PGVVQACLIGLQ------DH-PKVATNCSWTIINLV 481 (861)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH--HHHHHHHHHHHT------SC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHH--HHHHHHHHHHhc------cC-hHHHHHHHHHHHHHH
Confidence 46677777775 55788999999999888542210 01111 235677777776 44 889999999999886
Q ss_pred ccc-----chhhhhhccCCcHHHHHHHHhcCC--HHHHHHHHHHHHHhcCCCCch-hhhhccCChHHHHHHhhhc-----
Q 020640 108 IHD-----NNKKLVAETPMVIPLLMDALRSGT--IETRSNAAAALFTLSALDSNK-EVIGKSGALKPLIDLLDEG----- 174 (323)
Q Consensus 108 ~~~-----~~~~~i~~~~g~i~~Lv~ll~~~~--~~~~~~a~~~L~~L~~~~~~~-~~i~~~g~i~~Lv~lL~~~----- 174 (323)
..- +.-..... .+++.|+..+++.+ ..++..++.++..+....... .... ...++.+++.+...
T Consensus 482 ~~~~~~~~~~l~~~~~--~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~ 558 (861)
T 2bpt_A 482 EQLAEATPSPIYNFYP--ALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETS-ASISTFVMDKLGQTMSVDE 558 (861)
T ss_dssp HHHSSSSSCGGGGGHH--HHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHH-HHHHHHHHHHHHHHTTSCG
T ss_pred HhcccccchhhHHHHH--HHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHH-HHHHHHHHHHHHHHHhhhc
Confidence 532 11112222 25677788887543 678999999999997543321 1111 23667777776531
Q ss_pred ----------CHhHHHHHHHHHHHhccCCchh-HHHHhhCchHHHHHHhhcC---chHHHHHHHHHHHhcC--HHHHHHH
Q 020640 175 ----------HQSAMKDVASAIFNLCITHENK-ARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTN--HRAVEEI 238 (323)
Q Consensus 175 ----------~~~~~~~al~aL~~L~~~~~~~-~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~--~~~~~~i 238 (323)
...++..++.+|.+++..-... ..... ..++.++..+++. .+++.++.++..++.. ++....+
T Consensus 559 ~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l 637 (861)
T 2bpt_A 559 NQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL 637 (861)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3456778889998887644321 11111 3666777777754 5788888888888863 2222222
Q ss_pred HhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCC--HHHHHHHHHHHHHHhcc
Q 020640 239 GDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGT--ARAKRKATGILERLKRT 316 (323)
Q Consensus 239 ~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~~~~~A~~~L~~l~~~ 316 (323)
- ..++.+...+.+. +..++..++.++..++..-.+.....+ ..+++.+.+.+.+.+ +.++..+..++..+...
T Consensus 638 ~--~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~ 712 (861)
T 2bpt_A 638 E--TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVFGDIASN 712 (861)
T ss_dssp H--HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHH
Confidence 2 3678888888644 477999999999998876544444443 467888888888764 88999999999888764
No 63
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.61 E-value=3.2e-07 Score=85.12 Aligned_cols=258 Identities=10% Similarity=-0.000 Sum_probs=172.2
Q ss_pred hcCCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccc-hhh----
Q 020640 40 MSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN-NKK---- 114 (323)
Q Consensus 40 l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~-~~~---- 114 (323)
++.+..+|..|-..|..+...+ . .+.+..|+.++... +.++.++..|+..|.++-.... ...
T Consensus 11 ~s~d~~~r~~Ae~~L~~~~~~~--------~-~~~~~~L~~il~~~----~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~ 77 (462)
T 1ibr_B 11 VSPDRLELEAAQKFLERAAVEN--------L-PTFLVELSRVLANP----GNSQVARVAAGLQIKNSLTSKDPDIKAQYQ 77 (462)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHH--------H-HHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhhC--------h-HHHHHHHHHHHHcC----CCChHHHHHHHHHHHHhccccchHHHHHHH
Confidence 3567888999999998876421 1 45566788888742 3478999999999998754321 000
Q ss_pred ----hhh--ccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhc--CHhHHHHHHHHH
Q 020640 115 ----LVA--ETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEG--HQSAMKDVASAI 186 (323)
Q Consensus 115 ----~i~--~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~al~aL 186 (323)
.+- ....+...++..+.++++.+ ..++.++..++..+.... .-.+.++.|++.+.++ ++.++..++.+|
T Consensus 78 ~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~--~w~~ll~~L~~~l~~~~~~~~~r~~al~~l 154 (462)
T 1ibr_B 78 QRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN--QWPELIPQLVANVTNPNSTEHMKESTLEAI 154 (462)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc--ccHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 000 00113345677788777777 888899998875431110 1157899999999988 899999999999
Q ss_pred HHhccCC--chhHHHHhhCchHHHHHHhhcC----chHHHHHHHHHHHhcC-HHHH-HHHHhcCCHHHHHHHHhccCChh
Q 020640 187 FNLCITH--ENKARAVRDGGVSVILKKIMDG----VHVDELLAILAMLSTN-HRAV-EEIGDLGGVSCMLRIIRESTCDR 258 (323)
Q Consensus 187 ~~L~~~~--~~~~~i~~~g~v~~Lv~ll~~~----~~~~~a~~~L~~l~~~-~~~~-~~i~~~g~i~~Lv~ll~~~~~~~ 258 (323)
..++... +.-.... ...++.++..+.+. .++..++.++.++... ++.- ......-.++.+...+.+. ++.
T Consensus 155 ~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~ 232 (462)
T 1ibr_B 155 GYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP-DTR 232 (462)
T ss_dssp HHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCS-SHH
T ss_pred HHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-CHH
Confidence 9998643 1111111 13667788888764 4688899999987653 2111 0111111355555666544 488
Q ss_pred HHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640 259 NKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 316 (323)
Q Consensus 259 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 316 (323)
++..++.+|..++...+......+. ...++.++..+.+.++.++..|...+..+++.
T Consensus 233 vr~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~ 289 (462)
T 1ibr_B 233 VRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (462)
T ss_dssp HHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 9999999999999877653333331 16778888888888999999999999888765
No 64
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.48 E-value=1.4e-05 Score=73.61 Aligned_cols=223 Identities=10% Similarity=0.059 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHHHhccccchhhhhhccCC-cHHHHHHHHhc---------------C--CHHHHHHHHHHHHHhcCCCCc
Q 020640 93 PNLQEDVITTLLNLSIHDNNKKLVAETPM-VIPLLMDALRS---------------G--TIETRSNAAAALFTLSALDSN 154 (323)
Q Consensus 93 ~~~~~~a~~~L~~ls~~~~~~~~i~~~~g-~i~~Lv~ll~~---------------~--~~~~~~~a~~~L~~L~~~~~~ 154 (323)
...+..++..|..|...++.|..+.+.+| .++.++.+++. + ....+..++-++|-|+..++.
T Consensus 182 ~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~ 261 (480)
T 1ho8_A 182 MDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVF 261 (480)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHH
T ss_pred CchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHH
Confidence 44566788899999888899999886543 46666554431 1 356788999999999998877
Q ss_pred hhhhhccCCh--HHHHHHhhhc-CHhHHHHHHHHHHHhccCCc-h----hHHHHhhCchHHHHHHhhcC-----chH---
Q 020640 155 KEVIGKSGAL--KPLIDLLDEG-HQSAMKDVASAIFNLCITHE-N----KARAVRDGGVSVILKKIMDG-----VHV--- 218 (323)
Q Consensus 155 ~~~i~~~g~i--~~Lv~lL~~~-~~~~~~~al~aL~~L~~~~~-~----~~~i~~~g~v~~Lv~ll~~~-----~~~--- 218 (323)
...+...+.. +.|+++++.. .+++.+-++.+|.||..... . ...++-.+.+.+++..|... ++.
T Consensus 262 ~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~~l~~L~~rk~~Dedl~edl 341 (480)
T 1ho8_A 262 ANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDI 341 (480)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchHHHHHHhhCCCCcHHHHHHH
Confidence 7777766643 6777777764 68899999999999987651 1 12233223335566666643 221
Q ss_pred ----HHHHHHHHHHhc---------------CHHHHH-HHH--------hcC--CHHHHHHHHhc---------cCChhH
Q 020640 219 ----DELLAILAMLST---------------NHRAVE-EIG--------DLG--GVSCMLRIIRE---------STCDRN 259 (323)
Q Consensus 219 ----~~a~~~L~~l~~---------------~~~~~~-~i~--------~~g--~i~~Lv~ll~~---------~~~~~~ 259 (323)
+.--.....+++ .|-++. .|+ +.+ .+..|+++|+. +.++.+
T Consensus 342 ~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~ 421 (480)
T 1ho8_A 342 SNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKII 421 (480)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcce
Confidence 111111222221 122322 333 222 58999999974 223556
Q ss_pred HHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640 260 KENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 316 (323)
Q Consensus 260 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 316 (323)
..-||.=+..++.+.|. -+.++.+-|+-..+++++.+.+++++..|..++..+-.+
T Consensus 422 laVAc~Digefvr~~P~-gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 422 IQVALNDITHVVELLPE-SIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HHHHHHHHHHHHHHCTT-HHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred EEeecccHHHHHHHCcc-hhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 77789999999999886 567888899999999999999999999999999988654
No 65
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.47 E-value=5.1e-06 Score=68.95 Aligned_cols=185 Identities=15% Similarity=0.089 Sum_probs=143.1
Q ss_pred hhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccC-hhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640 29 DRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRM-PSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 106 (323)
Q Consensus 29 ~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l 106 (323)
..+.+..|.+++. +|+.++.+++.+|..+-+.- ...+....+ ..++.++.+++ ++|..+..+|+.+|..+
T Consensus 31 ~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e--~~Ld~iI~llk------~~dEkval~A~r~L~~L 102 (265)
T 3b2a_A 31 DKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE--RHLDVFINALS------QENEKVTIKALRALGYL 102 (265)
T ss_dssp CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH--HHHHHHHHTCC------STTHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH--HHHHHHHHHHh------ccchhHHHHHHHHHHHH
Confidence 3457888899996 77999999999999999763 334444555 57999999998 88999999999999987
Q ss_pred ccccc-hhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHH
Q 020640 107 SIHDN-NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASA 185 (323)
Q Consensus 107 s~~~~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~a 185 (323)
-.+.+ ....+.. +...+..+++++++-.+..++..+..+..... ..+++..+..++.+.+..++..++++
T Consensus 103 Le~vpL~~~~y~K---l~~aL~dlik~~~~il~~eaae~Lgklkv~~~------~~~V~~~l~sLl~Skd~~vK~agl~~ 173 (265)
T 3b2a_A 103 VKDVPMGSKTFLK---AAKTLVSLLESPDDMMRIETIDVLSKLQPLED------SKLVRTYINELVVSPDLYTKVAGFCL 173 (265)
T ss_dssp HTTCCBCHHHHHH---HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC------CHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HcCCCCCHHHHHH---HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc------hHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 66555 5666655 46889999999999999999999999932221 13467788899988999999999999
Q ss_pred HHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCH
Q 020640 186 IFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNH 232 (323)
Q Consensus 186 L~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~ 232 (323)
|.+++...+....+- +.+.-+-.++++. .+++.|+.+|..+.+.|
T Consensus 174 L~eia~~S~D~~i~~--~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 174 FLNMLNSSADSGHLT--LILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp HHHHGGGCSSCCCGG--GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHhhcccCCHHHHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 999987554332211 2333466677765 57999999999999874
No 66
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.42 E-value=2.2e-06 Score=89.68 Aligned_cols=226 Identities=14% Similarity=0.092 Sum_probs=156.5
Q ss_pred hhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc
Q 020640 30 RDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 108 (323)
Q Consensus 30 ~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~ 108 (323)
...++.+++.+. .++.+|..|+.+|..++..-+. . .. ...++.|+..|. ++++.++..++.+|..++.
T Consensus 47 ~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~-~~--~~i~~~Ll~~l~------d~~~~vR~~a~~~L~~i~~ 115 (1230)
T 1u6g_C 47 RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--Y-QV--ETIVDTLCTNML------SDKEQLRDISSIGLKTVIG 115 (1230)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--H-HH--HHHHHHHHHHTT------CSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--H-HH--HHHHHHHHHHhc------CCcHHHHHHHHHHHHHHHH
Confidence 357888888885 5688999999999999864332 1 11 235677777777 6677889999999988764
Q ss_pred ccch-------hhhhhccCCcHHHHHHHHh-cCCHHHHHHHHHHHHHhcCC-CCchhhhhccCChHHHHHHhhhcCHhHH
Q 020640 109 HDNN-------KKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSAL-DSNKEVIGKSGALKPLIDLLDEGHQSAM 179 (323)
Q Consensus 109 ~~~~-------~~~i~~~~g~i~~Lv~ll~-~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~ 179 (323)
.-.. ...... .+++.|+..+. +++...+..++.++..++.. .+.-.. .-...++.|+..+.+++..++
T Consensus 116 ~l~~~~~~~~~~~~~~~--~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~~~~~~vR 192 (1230)
T 1u6g_C 116 ELPPASSGSALAANVCK--KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN-FHPSILTCLLPQLTSPRLAVR 192 (1230)
T ss_dssp HCC-----CCTHHHHHH--HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT-THHHHHHHHGGGGGCSSHHHH
T ss_pred hCCCcccccchHHHHHH--HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHcCCcHHHH
Confidence 3221 112222 36888899988 57899999999999998742 111111 113467777788888889999
Q ss_pred HHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC---chHHHHHHHHHHHhcC-HHHHHHHHh--cCCHHHHHHHHhc
Q 020640 180 KDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTN-HRAVEEIGD--LGGVSCMLRIIRE 253 (323)
Q Consensus 180 ~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~-~~~~~~i~~--~g~i~~Lv~ll~~ 253 (323)
..|+.+|..++...+... . ...++.++..+.+. ..+..++.++..++.. ++ .+.. ..+++.++..+.+
T Consensus 193 ~~a~~al~~l~~~~~~~~--~-~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~l~~~ll~~l~d 266 (1230)
T 1u6g_C 193 KRTIIALGHLVMSCGNIV--F-VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH---RIGEYLEKIIPLVVKFCNV 266 (1230)
T ss_dssp HHHHHHHHHHTTTC------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG---GGTTSCTTHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhcCHHH--H-HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHhcC
Confidence 999999999987654321 1 23577888877643 4667778888877763 22 2222 3578888898886
Q ss_pred cCChhHHHHHHHHHHHhcccChH
Q 020640 254 STCDRNKENCIAILHTICLSDRT 276 (323)
Q Consensus 254 ~~~~~~~~~a~~~L~~L~~~~~~ 276 (323)
.+ +.+++.++.++..++...+.
T Consensus 267 ~~-~~vR~~a~~~l~~l~~~~~~ 288 (1230)
T 1u6g_C 267 DD-DELREYCIQAFESFVRRCPK 288 (1230)
T ss_dssp CC-TTTHHHHHHHHHHHHHCTTC
T ss_pred CC-HHHHHHHHHHHHHHHHHChH
Confidence 54 88999999999988876543
No 67
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.41 E-value=3.5e-05 Score=74.86 Aligned_cols=104 Identities=10% Similarity=0.013 Sum_probs=78.1
Q ss_pred HHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhh--cccccCCCCCHHHHHHHHHHHHHhcc
Q 020640 32 HFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPL--SESKCENGINPNLQEDVITTLLNLSI 108 (323)
Q Consensus 32 ~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL--~~~~~~~~~~~~~~~~a~~~L~~ls~ 108 (323)
+++.+.+-+. .++.++.-|+.+|.++.. ++. .+ ..++.+.+.| . +.++.++..|+.++..+..
T Consensus 112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e~----~~--~l~~~v~~~l~~~------d~~~~VRK~A~~al~kl~~ 177 (621)
T 2vgl_A 112 INNAIKNDLASRNPTFMGLALHCIANVGS--REM----AE--AFAGEIPKILVAG------DTMDSVKQSAALCLLRLYR 177 (621)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HHH----HH--HHTTHHHHHHHCS------SSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhccCC--HHH----HH--HHHHHHHHHHhCC------CCCHHHHHHHHHHHHHHHH
Confidence 4555555664 567788899999999863 432 22 3566788888 5 7789999999999998876
Q ss_pred ccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Q 020640 109 HDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD 152 (323)
Q Consensus 109 ~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~ 152 (323)
..+ ..+..+++++.+..+|.+.++.++..|+.++..++..+
T Consensus 178 ~~p---~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~ 218 (621)
T 2vgl_A 178 TSP---DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN 218 (621)
T ss_dssp HCG---GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred hCh---hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhC
Confidence 433 22232468999999999999999999999999997643
No 68
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.37 E-value=5e-06 Score=70.75 Aligned_cols=183 Identities=10% Similarity=0.054 Sum_probs=133.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCC-CCchhhhhccCChHHHHHHhh-hcCHhHHHHHHHHHHHhccCCchhHHHHhh
Q 020640 125 LLMDALRSGTIETRSNAAAALFTLSAL-DSNKEVIGKSGALKPLIDLLD-EGHQSAMKDVASAIFNLCITHENKARAVRD 202 (323)
Q Consensus 125 ~Lv~ll~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~al~aL~~L~~~~~~~~~i~~~ 202 (323)
.+...+.+.+-..+..++..|..+... +.....-. ...++.|.+.+. +.+..++..|+.+|..|+..-.....-.-.
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~ 97 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS 97 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 467788888999999999999998754 22111001 346778888884 789999999999999998533221111112
Q ss_pred CchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhccc-ChH-hH
Q 020640 203 GGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLS-DRT-KW 278 (323)
Q Consensus 203 g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~-~~~-~~ 278 (323)
..++.++..+.+. .+++.+..+|.+++..... ..+++.+...+++. ++.+|+.++..|..+... .+. ..
T Consensus 98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~~~~ 170 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNK-NPSVKSETALFIARALTRTQPTALN 170 (242)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCCCcc
Confidence 3788888888876 5789999999999875321 12467788888865 489999999999996543 333 12
Q ss_pred HHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 020640 279 KAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 317 (323)
Q Consensus 279 ~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 317 (323)
...+ ..+++.|++++.+.+++++..|..++..+....
T Consensus 171 ~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 171 KKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp HHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 2333 368999999999999999999999999988643
No 69
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.32 E-value=4.1e-06 Score=71.27 Aligned_cols=179 Identities=15% Similarity=0.116 Sum_probs=128.7
Q ss_pred HHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhh-cccccCCCCCHHHHHHHHHHHHHhccccch
Q 020640 35 SLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPL-SESKCENGINPNLQEDVITTLLNLSIHDNN 112 (323)
Q Consensus 35 ~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~ 112 (323)
.+.+.+. .++..|..|+..|..+....+.... ......++.|...+ + +.+..++..|+.++..|+..-..
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~--~~~~~i~~~L~~~l~k------d~~~~V~~~a~~~l~~la~~l~~ 90 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLEN--GEYGALVSALKKVITK------DSNVVLVAMAGKCLALLAKGLAK 90 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCC--CCCHHHHHHHHHHHHH------CSCHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCC--CCHHHHHHHHHHHhcc------CCCHHHHHHHHHHHHHHHHHHhh
Confidence 4667774 6799999999999999875332110 00012456667777 4 66899999999999999853221
Q ss_pred -hhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhcc
Q 020640 113 -KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCI 191 (323)
Q Consensus 113 -~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~ 191 (323)
-...+. .+++.++..+++.+..++..+..+|.++...... ...++.+...+++.++.++..++.+|..+..
T Consensus 91 ~~~~~~~--~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~ 162 (242)
T 2qk2_A 91 RFSNYAS--ACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALT 162 (242)
T ss_dssp GGHHHHH--HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 112222 2688888888999999999999999999764321 2367888888998899999999999999644
Q ss_pred CC-ch--hHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc
Q 020640 192 TH-EN--KARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST 230 (323)
Q Consensus 192 ~~-~~--~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~ 230 (323)
.. .. -...+. ..++.|+.++.+. .++..|..++..++.
T Consensus 163 ~~~~~~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 163 RTQPTALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp TCCGGGCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HcCCCCccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 32 21 112222 4788899999776 689999999988876
No 70
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.32 E-value=1.4e-05 Score=66.41 Aligned_cols=220 Identities=12% Similarity=0.077 Sum_probs=156.5
Q ss_pred CCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcccc--chhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 020640 73 DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD--NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSA 150 (323)
Q Consensus 73 g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~--~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~ 150 (323)
+.+..|..+|. +.|+.++.+++.+|..+-..- .-+..+.+. +++.+++++++.++.+.-.|+++|..|-.
T Consensus 33 ~~l~~L~~LL~------dkD~~vk~raL~~LeellK~~~~~l~~~~~e~--~Ld~iI~llk~~dEkval~A~r~L~~LLe 104 (265)
T 3b2a_A 33 RALFLILELAG------EDDETTRLRAFVALGEILKRADSDLRMMVLER--HLDVFINALSQENEKVTIKALRALGYLVK 104 (265)
T ss_dssp HHHHHHHHHTT------SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH--HHHHHHHTCCSTTHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHh------ccchHHHHHHHHHHHHHHHhccccccHHHHHH--HHHHHHHHHhccchhHHHHHHHHHHHHHc
Confidence 35677889998 889999999999999887663 345566664 69999999999999999999999999976
Q ss_pred CCC-chhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHH
Q 020640 151 LDS-NKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAM 227 (323)
Q Consensus 151 ~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~ 227 (323)
+.+ ....+.. .+..|..++.++++-...+++..|.-+.-....+ +++..+..++.+. .++..++++|.+
T Consensus 105 ~vpL~~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~e 176 (265)
T 3b2a_A 105 DVPMGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLN 176 (265)
T ss_dssp TCCBCHHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 543 2333332 5778888999999999999999999883222222 2445678888665 678889999999
Q ss_pred HhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhc-ccHHHHHHHh-hcCCHHHHHH
Q 020640 228 LSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEE-STHGTISKLA-QDGTARAKRK 305 (323)
Q Consensus 228 l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~-~~i~~L~~ll-~~~~~~~~~~ 305 (323)
++........+ ++++..+-.++++. ++.+++.|..++..+....= ..+++.+- +.....-.+. ..|.|..+.+
T Consensus 177 ia~~S~D~~i~--~~I~~eI~elL~~e-D~~l~e~aLd~Le~ils~pi--~~~~~~~~~~~~~~v~~l~~~~~~~~~~~k 251 (265)
T 3b2a_A 177 MLNSSADSGHL--TLILDEIPSLLQND-NEFIVELALDVLEKALSFPL--LENVKIELLKISRIVDGLVYREGAPIIRLK 251 (265)
T ss_dssp HGGGCSSCCCG--GGTTTTHHHHHTCS-CHHHHHHHHHHHHHHTTSCC--CSCCHHHHHHHHHHHHHGGGCSSCHHHHHH
T ss_pred hhcccCCHHHH--HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCcc--cHhHHHHHHHHHHHHHHHHHhcCChhHHHH
Confidence 99843221111 13455567788865 49999999999999988641 11222111 2222233344 5678999999
Q ss_pred HHHHHHHH
Q 020640 306 ATGILERL 313 (323)
Q Consensus 306 A~~~L~~l 313 (323)
|...-..+
T Consensus 252 a~~v~~~l 259 (265)
T 3b2a_A 252 AKKVSDLI 259 (265)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88766554
No 71
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.27 E-value=0.00031 Score=56.22 Aligned_cols=215 Identities=14% Similarity=0.167 Sum_probs=156.8
Q ss_pred hhhhHHHHHHHHhcCC-chhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640 28 ADRDHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 106 (323)
Q Consensus 28 ~~~~~i~~Lv~~l~~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l 106 (323)
.+...+..++..|.+| +.+|.+|+..+..++..-++....+. ..|+-+++. ++...+....++++..+
T Consensus 29 ~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~------~kL~vm~~k-----sEaIpltqeIa~a~G~l 97 (253)
T 2db0_A 29 YDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPML------KKLFSLLKK-----SEAIPLTQEIAKAFGQM 97 (253)
T ss_dssp HCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHH------HHHHHHHHH-----CCSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHH------HHHHHHHhh-----cccCchHHHHHHHHhHH
Confidence 4567888999999866 78999999999999987776654444 357777764 66777777778888888
Q ss_pred ccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CCchhhhhccCChHHHHHHhhhcCHhHHHHHHHH
Q 020640 107 SIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL-DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASA 185 (323)
Q Consensus 107 s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~a 185 (323)
+.. +..++.. ++|.+..=.+-+++.++.....+|..++.. ++.. .+++.-+..++.+++..-+..|++.
T Consensus 98 a~i---~Pe~v~~--vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~-----~~v~rdi~smltskd~~Dkl~aLnF 167 (253)
T 2db0_A 98 AKE---KPELVKS--MIPVLFANYRIGDEKTKINVSYALEEIAKANPMLM-----ASIVRDFMSMLSSKNREDKLTALNF 167 (253)
T ss_dssp HHH---CHHHHHH--HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHH-----HHHHHHHHHHTSCSSHHHHHHHHHH
T ss_pred HHh---CHHHHHh--hHHHHHHHHhcCCccceecHHHHHHHHHHhChHHH-----HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 753 4555552 688888777888999999999999999753 3222 3466778888998888888888888
Q ss_pred HHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc-CHHHHHHHHhcCCHHHHHHHHhccCChhHHHH
Q 020640 186 IFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKEN 262 (323)
Q Consensus 186 L~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 262 (323)
+..+.. |..+-+. -.+|.|..+|.++ -++..++.+|.+++. ++..|..+. ..++-+.+. ++.++..
T Consensus 168 i~alGe---n~~~yv~-PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~-S~lv~~~ 236 (253)
T 2db0_A 168 IEAMGE---NSFKYVN-PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDT-SSLVNKT 236 (253)
T ss_dssp HHTCCT---TTHHHHG-GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCS-CHHHHHH
T ss_pred HHHHhc---cCccccC-cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCc-HHHHHHH
Confidence 877643 3333332 3778899999887 478999999999999 566665543 233444433 4778888
Q ss_pred HHHHHHHhcccC
Q 020640 263 CIAILHTICLSD 274 (323)
Q Consensus 263 a~~~L~~L~~~~ 274 (323)
....|..+..-+
T Consensus 237 V~egL~rl~l~e 248 (253)
T 2db0_A 237 VKEGISRLLLLE 248 (253)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHh
Confidence 888887776544
No 72
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.26 E-value=0.00011 Score=71.21 Aligned_cols=252 Identities=9% Similarity=0.070 Sum_probs=168.6
Q ss_pred hHHHHHHHHh--c-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640 31 DHFLSLLKKM--S-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 107 (323)
Q Consensus 31 ~~i~~Lv~~l--~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls 107 (323)
..++.+.+.+ . .++.+|..|+.++.++...+++.. .. .+.++.+.++|. +.++.++..|+.++..++
T Consensus 146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~---~~-~~~~~~l~~lL~------d~d~~V~~~a~~~l~~i~ 215 (621)
T 2vgl_A 146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV---PM-GDWTSRVVHLLN------DQHLGVVTAATSLITTLA 215 (621)
T ss_dssp HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC---CC-CSCHHHHHHHTT------CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc---Cc-hhHHHHHHHHhC------CCCccHHHHHHHHHHHHH
Confidence 4566677777 4 568899999999999998776532 22 478999999998 789999999999999987
Q ss_pred cccchhhhhhccCCcHHHHHHHHh----cC-------------CHHHHHHHHHHHHHhcCCCC--chhhhhccCChHHHH
Q 020640 108 IHDNNKKLVAETPMVIPLLMDALR----SG-------------TIETRSNAAAALFTLSALDS--NKEVIGKSGALKPLI 168 (323)
Q Consensus 108 ~~~~~~~~i~~~~g~i~~Lv~ll~----~~-------------~~~~~~~a~~~L~~L~~~~~--~~~~i~~~g~i~~Lv 168 (323)
..+.. . .. ..++.++..|. .+ ++-.+...+..|..++..++ .+..+.+ .++.++
T Consensus 216 ~~~~~--~-~~--~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il 288 (621)
T 2vgl_A 216 QKNPE--E-FK--TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETIL 288 (621)
T ss_dssp HHCHH--H-HT--THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHH
T ss_pred HhChH--H-HH--HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHH
Confidence 64432 1 11 14555554443 21 56677777778777765322 2222222 333343
Q ss_pred HHh---------hhcC--HhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHH
Q 020640 169 DLL---------DEGH--QSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAV 235 (323)
Q Consensus 169 ~lL---------~~~~--~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~ 235 (323)
..+ ++.+ ..+...|.+++..+.... .+.. .++..|..++.++ +++..++..|..++......
T Consensus 289 ~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~----~~~~-~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~ 363 (621)
T 2vgl_A 289 NKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEP----NLLV-RACNQLGQFLQHRETNLRYLALESMCTLASSEFSH 363 (621)
T ss_dssp HHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCH----HHHH-HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH
T ss_pred HhhccCcccccccccchHHHHHHHHHHHHHhcCCcH----HHHH-HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH
Confidence 322 1122 378888999998886322 2222 2566788888654 68899999999998853222
Q ss_pred HHHHhcCCHHHHHHHHh-ccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 020640 236 EEIGDLGGVSCMLRIIR-ESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK 314 (323)
Q Consensus 236 ~~i~~~g~i~~Lv~ll~-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~ 314 (323)
..+. .....++..++ +.+ ..++..++.+|..++..+ .... .+..|.+.+.+.+.+.+..+...+..++
T Consensus 364 ~~~~--~~~~~i~~~L~~d~d-~~Ir~~aL~lL~~l~~~~--Nv~~------Iv~eL~~yl~~~d~~~~~~~v~~I~~la 432 (621)
T 2vgl_A 364 EAVK--THIETVINALKTERD-VSVRQRAVDLLYAMCDRS--NAQQ------IVAEMLSYLETADYSIREEIVLKVAILA 432 (621)
T ss_dssp HHHH--TTHHHHHHHHTTCCC-HHHHHHHHHHHHHHCCHH--HHHH------HHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHhccCCC-HhHHHHHHHHHHHHcChh--hHHH------HHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 2232 34677778887 554 889999999999998643 3333 4456777777788888888888888877
Q ss_pred c
Q 020640 315 R 315 (323)
Q Consensus 315 ~ 315 (323)
.
T Consensus 433 ~ 433 (621)
T 2vgl_A 433 E 433 (621)
T ss_dssp H
T ss_pred H
Confidence 3
No 73
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.17 E-value=9e-05 Score=65.14 Aligned_cols=154 Identities=5% Similarity=0.042 Sum_probs=125.8
Q ss_pred hHHHHHHhhhcCHhHHHHHHHHHHH-hccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHh
Q 020640 164 LKPLIDLLDEGHQSAMKDVASAIFN-LCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGD 240 (323)
Q Consensus 164 i~~Lv~lL~~~~~~~~~~al~aL~~-L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~ 240 (323)
+..+++-|.+++.+.++.++--|.. +..+.+-..++++.+|+..|+....++ +.+..++++|.++..+.++-..+++
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs 199 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA 199 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC
Confidence 4566677778888889999999998 677778999999999999999999876 7899999999999999999888886
Q ss_pred c-CCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhc---------ccHHHHHHHhh---cCCHHHHHHHH
Q 020640 241 L-GGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEE---------STHGTISKLAQ---DGTARAKRKAT 307 (323)
Q Consensus 241 ~-g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~---------~~i~~L~~ll~---~~~~~~~~~A~ 307 (323)
+ ..|+.+..++.. ....+...|+.+|..++..++....-+.... ...+.|+.+++ +++.+++.+|.
T Consensus 200 ~~~fI~~lyslv~s-~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 200 HSDTIQWLYTLCAS-LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp CHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHcC-ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 4 579999999985 4477899999999999998865443332211 23779999997 67999999999
Q ss_pred HHHHHHhcchh
Q 020640 308 GILERLKRTVN 318 (323)
Q Consensus 308 ~~L~~l~~~~~ 318 (323)
.++..+....+
T Consensus 279 tLIN~lL~~ap 289 (339)
T 3dad_A 279 TLINKTLAALP 289 (339)
T ss_dssp HHHHHHHHHCS
T ss_pred HHHHHHHhcCC
Confidence 99988776543
No 74
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.14 E-value=4.7e-07 Score=69.59 Aligned_cols=118 Identities=16% Similarity=0.115 Sum_probs=88.9
Q ss_pred hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640 31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 109 (323)
Q Consensus 31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~ 109 (323)
..++.++..|+ +++.+|..|+..|.++.. ..++.|+.+|+ ++++.++..|+.+|.++..
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-------------~~~~~L~~~L~------d~~~~vR~~A~~aL~~~~~- 71 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMGD-------------EAFEPLLESLS------NEDWRIRGAAAWIIGNFQD- 71 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCSS-------------TTHHHHHHGGG------CSCHHHHHHHHHHHGGGCS-
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-------------hHHHHHHHHHc------CCCHHHHHHHHHHHHhcCC-
Confidence 46778888886 668888888887765531 13688999998 7899999999999998752
Q ss_pred cchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHH
Q 020640 110 DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFN 188 (323)
Q Consensus 110 ~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~ 188 (323)
...++.|+..++++++.++..++++|..+.. ..+++.|+++++++++.++..|..+|..
T Consensus 72 ----------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 ----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 1257889999999999999999999998852 3468999999998899999999998864
No 75
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.03 E-value=8.2e-05 Score=63.64 Aligned_cols=190 Identities=8% Similarity=0.110 Sum_probs=130.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH-hcCC-CCchhhhhc-cCChHHHHHHh-hhcCHhHHHHHHHHHHHhccCCc-hhH--H
Q 020640 126 LMDALRSGTIETRSNAAAALFT-LSAL-DSNKEVIGK-SGALKPLIDLL-DEGHQSAMKDVASAIFNLCITHE-NKA--R 198 (323)
Q Consensus 126 Lv~ll~~~~~~~~~~a~~~L~~-L~~~-~~~~~~i~~-~g~i~~Lv~lL-~~~~~~~~~~al~aL~~L~~~~~-~~~--~ 198 (323)
+...+.+.+-.-+..++..|.. +... +.....-.+ ...+..|.+.+ ++.+..++..|+.+|..|+.+-. ... .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4456788888999999999999 8632 211100112 34577888888 56788999999999999985322 111 1
Q ss_pred HHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccCh
Q 020640 199 AVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR 275 (323)
Q Consensus 199 i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~ 275 (323)
... -.++.++..+++. .+++.+..+|..++.. +.....-.-..+++.|...+++. ++.+|+.++.+|..+....+
T Consensus 101 y~~-~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 101 YVS-LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCC
T ss_pred HHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcC
Confidence 222 2788899988876 5777777777777762 11100000012467888888865 48999999999999987664
Q ss_pred ---HhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchh
Q 020640 276 ---TKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVN 318 (323)
Q Consensus 276 ---~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 318 (323)
......+ ....++.|.+++.+.++.++..|..+|..+++.-.
T Consensus 179 ~~~~~l~~~l-~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG 223 (249)
T 2qk1_A 179 DGYSTLQRYL-KDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFG 223 (249)
T ss_dssp SCSHHHHHHH-TTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC
T ss_pred CcchhHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 2222222 14799999999999999999999999999886443
No 76
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.02 E-value=0.00099 Score=66.65 Aligned_cols=233 Identities=11% Similarity=-0.002 Sum_probs=156.6
Q ss_pred HHHHHHHHhc-CC--------chhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHH
Q 020640 32 HFLSLLKKMS-AT--------LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITT 102 (323)
Q Consensus 32 ~i~~Lv~~l~-~~--------~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~ 102 (323)
++..|.+.+. ++ +.++..|+..|.....++.. ..+++.|..+|. +++......|+.+
T Consensus 430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~--------eev~e~L~~~L~------dd~~~~~~~AalA 495 (963)
T 4ady_A 430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN--------IEVYEALKEVLY------NDSATSGEAAALG 495 (963)
T ss_dssp HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC--------HHHHHHHHHHHH------TCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHh------cCCHHHHHHHHHH
Confidence 4555555563 22 44666777777776543321 235667888887 5556666677777
Q ss_pred HHHhccccchhhhhhccCCcHHHHHHHH-hcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhh-cCHhHHH
Q 020640 103 LLNLSIHDNNKKLVAETPMVIPLLMDAL-RSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE-GHQSAMK 180 (323)
Q Consensus 103 L~~ls~~~~~~~~i~~~~g~i~~Lv~ll-~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~ 180 (323)
|..+-....+.. ++..|+..+ ...+..++..++..|.-+.... ...++.+++.|.. .++-++.
T Consensus 496 LGli~vGTgn~~-------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~--------~e~~~~li~~L~~~~dp~vRy 560 (963)
T 4ady_A 496 MGLCMLGTGKPE-------AIHDMFTYSQETQHGNITRGLAVGLALINYGR--------QELADDLITKMLASDESLLRY 560 (963)
T ss_dssp HHHHHTTCCCHH-------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC--------GGGGHHHHHHHHHCSCHHHHH
T ss_pred HhhhhcccCCHH-------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC--------hHHHHHHHHHHHhCCCHHHHH
Confidence 776533322222 234444444 3557888888888888775432 3468889998876 5777777
Q ss_pred HHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC---chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCCh
Q 020640 181 DVASAIFNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCD 257 (323)
Q Consensus 181 ~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~ 257 (323)
.++.++..-..+..+.. +++.|+..+.++ .++..|+..|..++..+. ..++.++.++..+.++
T Consensus 561 gaa~alglAyaGTGn~~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~ 626 (963)
T 4ady_A 561 GGAFTIALAYAGTGNNS------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNA 626 (963)
T ss_dssp HHHHHHHHHTTTSCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCH
T ss_pred HHHHHHHHHhcCCCCHH------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCH
Confidence 77777765444444432 344566665533 578889998888876542 3467777766655568
Q ss_pred hHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640 258 RNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 315 (323)
Q Consensus 258 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 315 (323)
.++..|+.+|..++..++. ..++..|..+.++.++.+++.|..+|..+..
T Consensus 627 ~VR~gAalALGli~aGn~~--------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 627 HVRCGTAFALGIACAGKGL--------QSAIDVLDPLTKDPVDFVRQAAMIALSMILI 676 (963)
T ss_dssp HHHHHHHHHHHHHTSSSCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhccCCCc--------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999988753 2456788888999999999999999987763
No 77
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.02 E-value=3e-05 Score=66.42 Aligned_cols=187 Identities=10% Similarity=0.068 Sum_probs=127.3
Q ss_pred HHHHh-cCCchhHHHHHHHHHH-HhccChhhHHHHhhhcCCHHHHHHhh-cccccCCCCCHHHHHHHHHHHHHhccccc-
Q 020640 36 LLKKM-SATLPDQTEAAKELRL-LTKRMPSFRALFGESHDAIPQLLSPL-SESKCENGINPNLQEDVITTLLNLSIHDN- 111 (323)
Q Consensus 36 Lv~~l-~~~~~~~~~a~~~L~~-l~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~~~~~~~a~~~L~~ls~~~~- 111 (323)
+-+++ +.++..|..|+..|.. +..+.+.....-.+....+..|...+ + +.+..++..|+.+|..++..-.
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~------D~n~~v~~~A~~al~~la~~l~~ 94 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQK------DANIQAVALAAQSVELICDKLKT 94 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHH------CSCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhcc------CCCHHHHHHHHHHHHHHHHhccc
Confidence 34566 4779999999999999 87543322100001012355666777 5 6789999999999999984321
Q ss_pred -hhh-hhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-chhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHH
Q 020640 112 -NKK-LVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS-NKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFN 188 (323)
Q Consensus 112 -~~~-~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~ 188 (323)
.-. .... -+++.++..+++....++..+..++..++..-+ ....-.-...++.|+..|.+.++.++..++.+|..
T Consensus 95 ~~f~~~y~~--~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~ 172 (249)
T 2qk1_A 95 PGFSKDYVS--LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNA 172 (249)
T ss_dssp TTSCHHHHH--HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred ccccHHHHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 111 2222 267788888888889999999999988875321 11110011367888889998899999999999999
Q ss_pred hccCCchh-HH---HHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc
Q 020640 189 LCITHENK-AR---AVRDGGVSVILKKIMDG--VHVDELLAILAMLST 230 (323)
Q Consensus 189 L~~~~~~~-~~---i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~ 230 (323)
+....... .. .+....++.|.+++.+. .++..|..+|..++.
T Consensus 173 ~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 173 SMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 87655421 12 22135888999999877 689999988888875
No 78
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.00 E-value=1.3e-06 Score=66.98 Aligned_cols=118 Identities=18% Similarity=0.159 Sum_probs=86.6
Q ss_pred cCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 020640 72 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL 151 (323)
Q Consensus 72 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~ 151 (323)
...++.++.+|+ ++++.++..|+.+|..+.. .. ++.|+.+|+++++.++..++++|.++..
T Consensus 11 ~~~~~~l~~~L~------~~~~~vR~~A~~~L~~~~~-----------~~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~- 71 (131)
T 1te4_A 11 SSGLVPRGSHMA------DENKWVRRDVSTALSRMGD-----------EA-FEPLLESLSNEDWRIRGAAAWIIGNFQD- 71 (131)
T ss_dssp ----------CC------SSCCCSSSSCCSSTTSCSS-----------TT-HHHHHHGGGCSCHHHHHHHHHHHGGGCS-
T ss_pred cccHHHHHHHhc------CCCHHHHHHHHHHHHHhCc-----------hH-HHHHHHHHcCCCHHHHHHHHHHHHhcCC-
Confidence 456788888888 7788888888887776531 22 6889999999999999999999988752
Q ss_pred CCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHH
Q 020640 152 DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAM 227 (323)
Q Consensus 152 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~ 227 (323)
...++.|++++.++++.++..++++|.++.. ..+++.|+.++++. .++..++.+|..
T Consensus 72 ---------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 ---------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ---------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2368999999999999999999999998752 24678899999865 577778777654
No 79
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.96 E-value=0.00033 Score=61.56 Aligned_cols=152 Identities=13% Similarity=0.113 Sum_probs=118.2
Q ss_pred hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640 31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 109 (323)
Q Consensus 31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~ 109 (323)
-.+..+++.|. ++...++.++..|..+-..+..+...|+. .+|+..|+++.. ..+...+.+++.+|.++=.+
T Consensus 118 ~ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~-~~GL~~Li~vi~------~~~gN~q~Y~L~AL~~LM~~ 190 (339)
T 3dad_A 118 VRVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVH-SEGLSCLIRVGA------AADHNYQSYILRALGQLMLF 190 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHH-TTHHHHHHHHHT------TSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHH-hccHHHHHHHHH------hcChHHHHHHHHHHHHHHhc
Confidence 35667888885 67888999999999944467889999999 999999999998 45789999999999999877
Q ss_pred cchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-chhhhhc-c---------CChHHHHHHhh---hcC
Q 020640 110 DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS-NKEVIGK-S---------GALKPLIDLLD---EGH 175 (323)
Q Consensus 110 ~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~-~~~~i~~-~---------g~i~~Lv~lL~---~~~ 175 (323)
.+....++....++..+..++.+....+.+.|..+|..+..+.+ +...+.+ . --++.|+.+|. ..+
T Consensus 191 v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D 270 (339)
T 3dad_A 191 VDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGAD 270 (339)
T ss_dssp HHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCC
T ss_pred cccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCC
Confidence 77776777655578889999998889999999999999986654 3322221 1 13667788886 457
Q ss_pred HhHHHHHHHHHHHh
Q 020640 176 QSAMKDVASAIFNL 189 (323)
Q Consensus 176 ~~~~~~al~aL~~L 189 (323)
.+++.+|+..|-.+
T Consensus 271 ~elq~~amtLIN~l 284 (339)
T 3dad_A 271 PELLVYTVTLINKT 284 (339)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777665444
No 80
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.94 E-value=0.00027 Score=63.32 Aligned_cols=208 Identities=8% Similarity=0.036 Sum_probs=126.2
Q ss_pred HHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCc
Q 020640 75 IPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN 154 (323)
Q Consensus 75 i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~ 154 (323)
+..|.+=++ ++++-++-.|+.+|.++...+ +.+. +.+.+-..+.+.++.+++.|+-+...|....+
T Consensus 106 ~Nsl~kDl~------~~N~~iR~lALRtL~~I~~~~-----m~~~--l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p- 171 (355)
T 3tjz_B 106 TSSLTKDMT------GKEDSYRGPAVRALCQITDST-----MLQA--IERYMKQAIVDKVPSVSSSALVSSLHLLKCSF- 171 (355)
T ss_dssp HHHHHHHHH------SSCHHHHHHHHHHHHHHCCTT-----THHH--HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH-
T ss_pred HHHHHhhcC------CCcHhHHHHHHHHHhcCCCHH-----HHHH--HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH-
Confidence 344555555 778999999999999996433 3332 45667788889999999999999999865432
Q ss_pred hhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcCch--HHHHHHHHHHHhcC-
Q 020640 155 KEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVH--VDELLAILAMLSTN- 231 (323)
Q Consensus 155 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~--~~~a~~~L~~l~~~- 231 (323)
.+++ +.++.+-+++.+.++.+..+|+.+|+.++..+.. .+..|+..+..+.+ ...-+.++..++..
T Consensus 172 --e~v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~--------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~ 240 (355)
T 3tjz_B 172 --DVVK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL--------AVSKMISKFTRHGLKSPFAYCMMIRVASRQL 240 (355)
T ss_dssp --HHHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH--------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-
T ss_pred --HHHH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH--------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhc
Confidence 2333 6899999999999999999999999999875421 34455555555422 33334444444442
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHH
Q 020640 232 HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILE 311 (323)
Q Consensus 232 ~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~ 311 (323)
++... -.....++.|...+++. ++.+...|++++..+...... .+ ..++..|..++.+.++++|--|...|.
T Consensus 241 ~~d~~-~~~~~~~~~l~~~L~~~-~~aVvyEa~k~I~~l~~~~~~----~~--~~a~~~L~~fLss~d~niryvaLr~L~ 312 (355)
T 3tjz_B 241 EDEDG-SRDSPLFDFIESCLRNK-HEMVVYEAASAIVNLPGCSAK----EL--APAVSVLQLFCSSPKAALRYAAVRTLN 312 (355)
T ss_dssp -----------------CCCCCS-SHHHHHHHHHHHTC-----------------CCCTHHHHHHSSSSSSHHHHHHCC-
T ss_pred cccch-hhHHHHHHHHHHHHcCC-ChHHHHHHHHHHHhccCCCHH----HH--HHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 11100 01123455566666644 488888899999888663322 11 345677777888888888888877777
Q ss_pred HHhc
Q 020640 312 RLKR 315 (323)
Q Consensus 312 ~l~~ 315 (323)
.+..
T Consensus 313 ~l~~ 316 (355)
T 3tjz_B 313 KVAM 316 (355)
T ss_dssp ----
T ss_pred HHHH
Confidence 6664
No 81
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.81 E-value=0.0052 Score=62.03 Aligned_cols=261 Identities=15% Similarity=0.150 Sum_probs=176.1
Q ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHHhccChh--hHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc
Q 020640 31 DHFLSLLKKMSATLPDQTEAAKELRLLTKRMPS--FRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 108 (323)
Q Consensus 31 ~~i~~Lv~~l~~~~~~~~~a~~~L~~l~~~~~~--~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~ 108 (323)
+.+..|.+.+.+.... +.|+..+..++..... ..+.+. .+.++.+++.+. +....++..|-.++..+..
T Consensus 54 ~~~~~~~~~~~~k~~~-~~a~~~~~~~~~~~~~~~~~e~~~--~~~~~~~~~~~~------dk~~~v~~aa~~~~~~~~~ 124 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA-ANAMQAVAHIANQSNLSPSVEPYI--VQLVPAICTNAG------NKDKEIQSVASETLISIVN 124 (986)
T ss_dssp HHHHHHHHHHTSHHHH-HHHHHHHHHHTCTTTCCTTTHHHH--HTTHHHHHHHTT------CSSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccCCH-HHHHHHHHHHHHhcCCCCCcccch--HHHHHHHHHHhc------CCchHHHHHHHHHHHHHHH
Confidence 5666677776432122 7888888888854321 111111 135666666655 6677888888777776643
Q ss_pred ccchhhhhhccCCcHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCCCchhhhhc--cCChHHHHHHhhhcCHhHHHHHHHH
Q 020640 109 HDNNKKLVAETPMVIPLLMDALRSG-TIETRSNAAAALFTLSALDSNKEVIGK--SGALKPLIDLLDEGHQSAMKDVASA 185 (323)
Q Consensus 109 ~~~~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~al~a 185 (323)
.-. -..+ . .++|.|+..+++. .=..+..|+.++..|+... ...+.. ..++|.+.+.+.+..+++...|..+
T Consensus 125 ~~~-~~a~-~--~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~ 198 (986)
T 2iw3_A 125 AVN-PVAI-K--ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDTKKEVKAAATAA 198 (986)
T ss_dssp HSC-GGGH-H--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred hCC-HHHH-H--HHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccCcHHHHHHHHHH
Confidence 221 1112 1 2688899988765 4688889999999998643 233333 6688888888888899999999999
Q ss_pred HHHhccCCchhHHHHhhCchHHHHHHhhcCchHHHHHHHHHHHhcCH---HHHHHHHhcCCHHHHHHHHhccCChhHHHH
Q 020640 186 IFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNH---RAVEEIGDLGGVSCMLRIIRESTCDRNKEN 262 (323)
Q Consensus 186 L~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~l~~~~---~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 262 (323)
+..+|..-+|+.- ...+|.|++.+.+++-...++..|..-..-. .-.-.++ +|.|..-|.+.+ ..++++
T Consensus 199 ~~~~~~~~~n~d~---~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~~----~p~l~r~l~~~~-~~~~r~ 270 (986)
T 2iw3_A 199 MTKATETVDNKDI---ERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIM----VPLLSRGLNERE-TGIKRK 270 (986)
T ss_dssp HHHHGGGCCCTTT---GGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHHH----HHHHHHHHTSSS-HHHHHH
T ss_pred HHHHHhcCCCcch---hhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHHH----HHHHHhhhccCc-chhhee
Confidence 9999875555432 2478889999988866666666555554421 2222222 566777777544 778999
Q ss_pred HHHHHHHhcc--cChHhHHHHHhhcccHHHHHHHhhcC-CHHHHHHHHHHHHHHhcc
Q 020640 263 CIAILHTICL--SDRTKWKAMREEESTHGTISKLAQDG-TARAKRKATGILERLKRT 316 (323)
Q Consensus 263 a~~~L~~L~~--~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~A~~~L~~l~~~ 316 (323)
++-++-|+|. ++|...+.++ ...+|.|-+....- +|++++.|..++..|.+.
T Consensus 271 ~~~~~~n~~~lv~~~~~~~~f~--~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 271 SAVIIDNMCKLVEDPQVIAPFL--GKLLPGLKSNFATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHH--TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred eEEEEcchhhhcCCHHHHhhhh--hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence 9999999998 4555555665 46777777766544 899999999999988654
No 82
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.77 E-value=0.00014 Score=65.15 Aligned_cols=239 Identities=13% Similarity=0.061 Sum_probs=124.1
Q ss_pred hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640 31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 109 (323)
Q Consensus 31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~ 109 (323)
-+++.+.+-+. .++.+|-.|+++|.++.. ++.-. ...+.+-+.|. +.++.++..|+-+...|...
T Consensus 104 Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~~------~l~~~lk~~L~------d~~pyVRk~A~l~~~kL~~~ 169 (355)
T 3tjz_B 104 IVTSSLTKDMTGKEDSYRGPAVRALCQITD--STMLQ------AIERYMKQAIV------DKVPSVSSSALVSSLHLLKC 169 (355)
T ss_dssp GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTHH------HHHHHHHHHHT------CSSHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHHH------HHHHHHHHHcC------CCCHHHHHHHHHHHHHHhcc
Confidence 36777777775 668889999999999984 33221 23444666666 78999999999999888654
Q ss_pred cchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhc---CHhHHHHHHHHH
Q 020640 110 DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEG---HQSAMKDVASAI 186 (323)
Q Consensus 110 ~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~~~~~al~aL 186 (323)
... +++ +++..+-+++.+.++-++.+|..+|..+..++. ..+..|+.-+..+ ++-.+...++.+
T Consensus 170 ~pe---~v~--~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~--------~a~~kLv~~l~~~~l~~~~~q~~llr~l 236 (355)
T 3tjz_B 170 SFD---VVK--RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR--------LAVSKMISKFTRHGLKSPFAYCMMIRVA 236 (355)
T ss_dssp CHH---HHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH--------HHHHHHHHHHHSSCCSCHHHHHHHHHHH
T ss_pred CHH---HHH--HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch--------HHHHHHHHHHhcCCCcChHHHHHHHHHH
Confidence 332 333 378889999999999999999999999986541 1455666666553 344444555555
Q ss_pred HHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHH
Q 020640 187 FNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCI 264 (323)
Q Consensus 187 ~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~ 264 (323)
..++..++.. .....++.+...|++. .+...|+.++..+...+.. .. ..++..|..++.+++ +.+|..|+
T Consensus 237 ~~~~~~d~~~---~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~---~~-~~a~~~L~~fLss~d-~niryvaL 308 (355)
T 3tjz_B 237 SRQLEDEDGS---RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK---EL-APAVSVLQLFCSSPK-AALRYAAV 308 (355)
T ss_dssp TCC--------------------CCCCCSSHHHHHHHHHHHTC---------------CCCTHHHHHHSSS-SSSHHHHH
T ss_pred HHhccccchh---hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH---HH-HHHHHHHHHHHcCCC-chHHHHHH
Confidence 4554433110 1122334455555544 5778888888887653221 22 234566777777554 88999999
Q ss_pred HHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHH
Q 020640 265 AILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGIL 310 (323)
Q Consensus 265 ~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L 310 (323)
..|..+....|+.. ..+-.-+.+++.+++..+...|...|
T Consensus 309 r~L~~l~~~~P~~v------~~~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 309 RTLNKVAMKHPSAV------TACNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp HCC-------------------------------------------
T ss_pred HHHHHHHHHCcHHH------HHHHHHHHHHccCCcHhHHHHHHHHh
Confidence 99999999887532 24667788889988888888877655
No 83
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.65 E-value=0.012 Score=47.04 Aligned_cols=214 Identities=11% Similarity=0.124 Sum_probs=146.8
Q ss_pred cCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHh-cCCHHHHHHHHHHHHHhcC
Q 020640 72 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSA 150 (323)
Q Consensus 72 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~-~~~~~~~~~a~~~L~~L~~ 150 (323)
...+..++.+|. ++-..++.+|+.++.+++..- ....+ + .+..|+.+++ ++..+.-...++++..++.
T Consensus 31 ~~~l~~lI~~LD------DDlwtV~kNAl~vi~~i~~~~---~el~e-p-l~~kL~vm~~ksEaIpltqeIa~a~G~la~ 99 (253)
T 2db0_A 31 ESVLKKLIELLD------DDLWTVVKNAISIIMVIAKTR---EDLYE-P-MLKKLFSLLKKSEAIPLTQEIAKAFGQMAK 99 (253)
T ss_dssp HHHHHHHHHHTT------CSCHHHHHHHHHHHHHHHTTC---GGGHH-H-HHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc------cHHHHHHHhHHHHHHHHHHHh---HHHHH-H-HHHHHHHHHhhcccCchHHHHHHHHhHHHH
Confidence 446788999998 777899999999999987643 22222 2 3555666764 6677777778888888875
Q ss_pred CCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcCc--hHHHHHHHHHHH
Q 020640 151 LDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGV--HVDELLAILAML 228 (323)
Q Consensus 151 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~--~~~~a~~~L~~l 228 (323)
. +..+++ +.+|.+..=.+-+++.++.+...+|..++..++.-.. +++.-+..++.+++ -+-.++..+..+
T Consensus 100 i---~Pe~v~-~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~----~v~rdi~smltskd~~Dkl~aLnFi~al 171 (253)
T 2db0_A 100 E---KPELVK-SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA----SIVRDFMSMLSSKNREDKLTALNFIEAM 171 (253)
T ss_dssp H---CHHHHH-HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH----HHHHHHHHHTSCSSHHHHHHHHHHHHTC
T ss_pred h---CHHHHH-hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH----HHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 2 223333 2566666666668999999999999998876643222 24445777777663 344455555444
Q ss_pred hcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHH
Q 020640 229 STNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATG 308 (323)
Q Consensus 229 ~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~ 308 (323)
..+ +-+.+. -.++.|..+|.+.+ ..++..|+.+|.+++..++. .+.++ ..-++-+.+.++.++.+...
T Consensus 172 Gen--~~~yv~--PfLprL~aLL~D~d-eiVRaSaVEtL~~lA~~npk-lRkii------~~kl~e~~D~S~lv~~~V~e 239 (253)
T 2db0_A 172 GEN--SFKYVN--PFLPRIINLLHDGD-EIVRASAVEALVHLATLNDK-LRKVV------IKRLEELNDTSSLVNKTVKE 239 (253)
T ss_dssp CTT--THHHHG--GGHHHHHGGGGCSS-HHHHHHHHHHHHHHHTSCHH-HHHHH------HHHHHHCCCSCHHHHHHHHH
T ss_pred hcc--CccccC--cchHHHHHHHcCcc-hhhhHHHHHHHHHHHHcCHH-HHHHH------HHHHHHhcCcHHHHHHHHHH
Confidence 432 111121 35899999999765 88999999999999999975 45543 33455567778999998888
Q ss_pred HHHHHhcc
Q 020640 309 ILERLKRT 316 (323)
Q Consensus 309 ~L~~l~~~ 316 (323)
.|..+.-.
T Consensus 240 gL~rl~l~ 247 (253)
T 2db0_A 240 GISRLLLL 247 (253)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 88877643
No 84
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.63 E-value=0.028 Score=51.85 Aligned_cols=232 Identities=15% Similarity=0.152 Sum_probs=144.1
Q ss_pred cCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccc---hhhhh-hccCCcHHHHHHHHhcCCHHH-HHHHHHHHH
Q 020640 72 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN---NKKLV-AETPMVIPLLMDALRSGTIET-RSNAAAALF 146 (323)
Q Consensus 72 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~---~~~~i-~~~~g~i~~Lv~ll~~~~~~~-~~~a~~~L~ 146 (323)
..++..++++|.. ..+.++..+.+..+.-+-..+. .+..+ .+.+.....+.......+... ...++.++.
T Consensus 76 ~~~~~~~l~lL~~-----~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ 150 (480)
T 1ho8_A 76 GKTLIPLIHLLST-----SDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVS 150 (480)
T ss_dssp STTHHHHHHHHHS-----CCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhh-----cChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHH
Confidence 5578889999985 4578888888888877655544 44344 333322222333222334433 445555545
Q ss_pred HhcCCCCchhhhhccCChHH------HHHHhhh-cCHhHHHHHHHHHHHhccCCchhHHHHhhC--chHHHHHHhhc---
Q 020640 147 TLSALDSNKEVIGKSGALKP------LIDLLDE-GHQSAMKDVASAIFNLCITHENKARAVRDG--GVSVILKKIMD--- 214 (323)
Q Consensus 147 ~L~~~~~~~~~i~~~g~i~~------Lv~lL~~-~~~~~~~~al~aL~~L~~~~~~~~~i~~~g--~v~~Lv~ll~~--- 214 (323)
.++..... +...++. ++..|.. .+...+.-++.+|..|...++.|..+.+.+ .++.++.+++.
T Consensus 151 ll~~~~~~-----~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~ 225 (480)
T 1ho8_A 151 LLVQNGLH-----NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATD 225 (480)
T ss_dssp HHTSTTTC-----CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC
T ss_pred HHhccCCc-----cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhc
Confidence 55422211 1223333 3334444 234556679999999999999999887653 46777655441
Q ss_pred ------------C----chHHHHHHHHHHHhcCHHHHHHHHhcCCH--HHHHHHHhccCChhHHHHHHHHHHHhcccCh-
Q 020640 215 ------------G----VHVDELLAILAMLSTNHRAVEEIGDLGGV--SCMLRIIRESTCDRNKENCIAILHTICLSDR- 275 (323)
Q Consensus 215 ------------~----~~~~~a~~~L~~l~~~~~~~~~i~~~g~i--~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~- 275 (323)
+ .++..++-+++-|+..++..+.+...+.. ..|+.+++....+++.+-++.+|.|+....+
T Consensus 226 ~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~ 305 (480)
T 1ho8_A 226 SQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVK 305 (480)
T ss_dssp -------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSST
T ss_pred cccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccch
Confidence 1 24678899999999999988888877754 7788888876668899999999999998763
Q ss_pred ---HhHHHHHhhcccHHHHHHHhhcC--CHHHHHHHHHHHHHH
Q 020640 276 ---TKWKAMREEESTHGTISKLAQDG--TARAKRKATGILERL 313 (323)
Q Consensus 276 ---~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~A~~~L~~l 313 (323)
....+++...++++.|..+.... ++++.+--..+...|
T Consensus 306 ~~~~~~~~~~~~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L 348 (480)
T 1ho8_A 306 QHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEIL 348 (480)
T ss_dssp THHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHccchHHHHHHhhCCCCcHHHHHHHHHHHHHH
Confidence 22333443345555555454433 666655544444443
No 85
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.58 E-value=0.0099 Score=59.56 Aligned_cols=236 Identities=12% Similarity=0.076 Sum_probs=148.6
Q ss_pred hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640 31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 109 (323)
Q Consensus 31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~ 109 (323)
++++.|...+. ++...+..|...|..+-.++.+ ..++..|+..+.+ ..+..+++.++..|..+...
T Consensus 472 ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn--------~~ai~~LL~~~~e-----~~~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 472 EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK--------PEAIHDMFTYSQE-----TQHGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC--------HHHHHHHHHHHHH-----CSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC--------HHHHHHHHHHHhc-----cCcHHHHHHHHHHHHhhhCC
Confidence 46777777775 3344555677777666433321 2245567766653 44678888888888877543
Q ss_pred cchhhhhhccCCcHHHHHHHHh-cCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhh-cCHhHHHHHHHHHH
Q 020640 110 DNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE-GHQSAMKDVASAIF 187 (323)
Q Consensus 110 ~~~~~~i~~~~g~i~~Lv~ll~-~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~al~aL~ 187 (323)
.. ..++.+++.|. +.++-++..++.++.--.....|. .+|+.|+..+.+ .+..++..|..+|.
T Consensus 539 ~~---------e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~------~aIq~LL~~~~~d~~d~VRraAViaLG 603 (963)
T 4ady_A 539 RQ---------ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN------SAVKRLLHVAVSDSNDDVRRAAVIALG 603 (963)
T ss_dssp CG---------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH------HHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred Ch---------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 31 24667777776 467788887777776544333332 357778887665 47789999999999
Q ss_pred HhccCCchhHHHHhhCchHHHHHHhhc-C--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHH
Q 020640 188 NLCITHENKARAVRDGGVSVILKKIMD-G--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCI 264 (323)
Q Consensus 188 ~L~~~~~~~~~i~~~g~v~~Lv~ll~~-~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~ 264 (323)
.+...++ ..++.++.+|.+ + .++..+..+|..++...... .++..|..+..+.+ +.++..|+
T Consensus 604 lI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~------~aid~L~~L~~D~d-~~Vrq~Ai 668 (963)
T 4ady_A 604 FVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ------SAIDVLDPLTKDPV-DFVRQAAM 668 (963)
T ss_dssp HHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH------HHHHHHHHHHTCSS-HHHHHHHH
T ss_pred hhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH------HHHHHHHHHccCCC-HHHHHHHH
Confidence 8876654 245666665553 3 57888999999888743221 23556667777654 99999999
Q ss_pred HHHHHhcccChHhHHHHHhhcccHHHHHHHhhc--CCHHHHHHHHHHHH
Q 020640 265 AILHTICLSDRTKWKAMREEESTHGTISKLAQD--GTARAKRKATGILE 311 (323)
Q Consensus 265 ~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~A~~~L~ 311 (323)
.+|..+...+.+....-+ .+....|.+...+ .++.++-.|..++-
T Consensus 669 ~ALG~Ig~gtnna~~~rv--a~~l~~L~~~~~dk~~d~~~~fga~iAqG 715 (963)
T 4ady_A 669 IALSMILIQQTEKLNPQV--ADINKNFLSVITNKHQEGLAKFGACVAQG 715 (963)
T ss_dssp HHHHHHSTTCCTTTCTTH--HHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCccccchHH--HHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 999999887644311111 1344445555543 34555555444443
No 86
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.19 E-value=0.037 Score=55.93 Aligned_cols=222 Identities=11% Similarity=0.130 Sum_probs=147.9
Q ss_pred hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640 31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 109 (323)
Q Consensus 31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~ 109 (323)
+.++.+++... ....+|..|..++..+...-+.+. + ...+|.|++.|.+ +...+.+..|+.++..|+..
T Consensus 95 ~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a--~---~~~~~~~~~~~~~-----~~kw~~k~~~l~~~~~~~~~ 164 (986)
T 2iw3_A 95 QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA--I---KALLPHLTNAIVE-----TNKWQEKIAILAAFSAMVDA 164 (986)
T ss_dssp TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG--H---HHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH--H---HHHHHHHHHHhcc-----ccchHHHHHHHHHHHHHHHH
Confidence 45677777774 346677666666655554332221 1 3468889999974 33588999999999999864
Q ss_pred cchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHh
Q 020640 110 DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNL 189 (323)
Q Consensus 110 ~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L 189 (323)
...+-. ..-+.++|.+...+-+..+++...|..++..++.--+|+.. ...+|.|++.+.+++. .-.+...|..-
T Consensus 165 ~~~~~~-~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~ 238 (986)
T 2iw3_A 165 AKDQVA-LRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGAT 238 (986)
T ss_dssp SHHHHH-HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTC
T ss_pred hHHHHH-HhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcC
Confidence 422111 11233677777777778899999999999999875555543 3479999999998743 44455555544
Q ss_pred ccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc---CHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHH
Q 020640 190 CITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST---NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCI 264 (323)
Q Consensus 190 ~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~---~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~ 264 (323)
++-.+.-...+.. .+|.|.+-|.+. ..+.+++-++-|||. +|.....|+- ..+|.|-+....-.++++++.|-
T Consensus 239 tfv~~v~~~~l~~-~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~pe~r~~~~ 316 (986)
T 2iw3_A 239 TFVAEVTPATLSI-MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIADPEAREVTL 316 (986)
T ss_dssp CCCSCCCHHHHHH-HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCSHHHHHHHH
T ss_pred eeEeeecchhHHH-HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCCHHHHHHHH
Confidence 4444433333332 567777777765 578899999999999 3444444442 45777777776545588888887
Q ss_pred HHHHHh
Q 020640 265 AILHTI 270 (323)
Q Consensus 265 ~~L~~L 270 (323)
.++..|
T Consensus 317 ~a~~~l 322 (986)
T 2iw3_A 317 RALKTL 322 (986)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777777
No 87
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.09 E-value=0.013 Score=59.60 Aligned_cols=259 Identities=12% Similarity=0.068 Sum_probs=146.8
Q ss_pred hHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhh-hhh---ccCC
Q 020640 46 DQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKK-LVA---ETPM 121 (323)
Q Consensus 46 ~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~-~i~---~~~g 121 (323)
.|..|...|..++..-+ ..+.. -.++.+.+.+.......+++...++.|+.++..++..-.... .+. ....
T Consensus 377 ~R~aa~~~L~~l~~~~~---~~v~~--~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 377 RRRACTDFLKELKEKNE---VLVTN--IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp HHHHHHHHHHHHHHHCH---HHHHH--HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred cHHHHHHHHHHHHHHcc---hhHHH--HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 46667777777775432 22221 123333344432110003467889999999999875321111 000 0001
Q ss_pred cHHH----HHHHHhcC---CHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCc
Q 020640 122 VIPL----LMDALRSG---TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHE 194 (323)
Q Consensus 122 ~i~~----Lv~ll~~~---~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~ 194 (323)
+.+. ++..+.++ ++-++..+++++..++..- ... .. ..+++.+++.|.+++..++..|+.+|.+++...+
T Consensus 452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~-~l-~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~ 528 (960)
T 1wa5_C 452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKA-QL-IELMPILATFLQTDEYVVYTYAAITIEKILTIRE 528 (960)
T ss_dssp HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHH-HH-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHH-HH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccc
Confidence 2332 33345666 8999999999999998642 122 11 3367888888888889999999999999987422
Q ss_pred ---------hhHHHHh--hCchHHHHHHhhcCc-------hHHHHHHHHHHHhcC--HHHHHHHHhcCCHHHHHHHHhc-
Q 020640 195 ---------NKARAVR--DGGVSVILKKIMDGV-------HVDELLAILAMLSTN--HRAVEEIGDLGGVSCMLRIIRE- 253 (323)
Q Consensus 195 ---------~~~~i~~--~g~v~~Lv~ll~~~~-------~~~~a~~~L~~l~~~--~~~~~~i~~~g~i~~Lv~ll~~- 253 (323)
.+..+.. ...++.|+.++.... ..+.+..+|..++.. ++....+. ..++.|+..+..
T Consensus 529 ~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~--~l~~~L~~~l~~~ 606 (960)
T 1wa5_C 529 SNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP--QLLAQFIEIVTIM 606 (960)
T ss_dssp CSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH--HHHHHHHHHHHHH
T ss_pred ccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHH
Confidence 1222321 135556666666531 345566666665441 21111111 134555555532
Q ss_pred ---cCChhHHHHHHHHHHHhccc-ChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640 254 ---STCDRNKENCIAILHTICLS-DRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 316 (323)
Q Consensus 254 ---~~~~~~~~~a~~~L~~L~~~-~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 316 (323)
.++......++.++..+... .++....+ ...+++.+..++..........+..++..+...
T Consensus 607 ~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~--~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 607 AKNPSNPRFTHYTFESIGAILNYTQRQNLPLL--VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQ 671 (960)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH--HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH--HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHh
Confidence 33345666678888887775 33334444 346788888888777666666677777666543
No 88
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.56 E-value=0.098 Score=44.03 Aligned_cols=143 Identities=10% Similarity=0.087 Sum_probs=101.3
Q ss_pred CHhHHHHHHHHHHHhccCCchhHHHH-h-hCchHHHHHHhh-------cCch-------HHHHHHHHHHHhcCHHHHHHH
Q 020640 175 HQSAMKDVASAIFNLCITHENKARAV-R-DGGVSVILKKIM-------DGVH-------VDELLAILAMLSTNHRAVEEI 238 (323)
Q Consensus 175 ~~~~~~~al~aL~~L~~~~~~~~~i~-~-~g~v~~Lv~ll~-------~~~~-------~~~a~~~L~~l~~~~~~~~~i 238 (323)
+++.++.|+.-|..=-...++-..++ . .|.+..|++=+- .+.+ .-+|+..|..+|++|+.|..|
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~F 93 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAF 93 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhHH
Confidence 44556666655543222222333332 3 376666655322 1211 356778888999999999999
Q ss_pred HhcCCHHHHHHHHhccCC----hhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 020640 239 GDLGGVSCMLRIIRESTC----DRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK 314 (323)
Q Consensus 239 ~~~g~i~~Lv~ll~~~~~----~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~ 314 (323)
+++...-.|-.++...+. +.++-.+.+++..|...++...-.++.+.++++..++.+..|++..|.-|..++..+-
T Consensus 94 l~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL 173 (268)
T 2fv2_A 94 LAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKIL 173 (268)
T ss_dssp HHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence 999987777778865332 4578899999999998776555566667899999999999999999999999998876
Q ss_pred cch
Q 020640 315 RTV 317 (323)
Q Consensus 315 ~~~ 317 (323)
-..
T Consensus 174 ~dd 176 (268)
T 2fv2_A 174 LDD 176 (268)
T ss_dssp HSH
T ss_pred ccc
Confidence 443
No 89
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=96.25 E-value=0.88 Score=46.08 Aligned_cols=207 Identities=8% Similarity=0.046 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhc-----CCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHH
Q 020640 95 LQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRS-----GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLID 169 (323)
Q Consensus 95 ~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~-----~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ 169 (323)
.+..+..+|..++..-. ..+... +.+.+-..+.+ .+-..++.++.++..++..-.... ...++.++.
T Consensus 437 ~R~~~~~~l~~~~~~~~--~~~l~~--~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~ 508 (971)
T 2x1g_F 437 YRQDISDTFMYCYDVLN--DYILEI--LAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMR 508 (971)
T ss_dssp HHHHHHHHHHHHHTTCT--THHHHH--HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC----------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--HHHHHH--HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHH
Confidence 45556666666553221 112111 23333334433 455678889999999875432111 123444554
Q ss_pred Hh---h--hcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcCchHHHHHHHHHHHhcCHHHHHHHHh--cC
Q 020640 170 LL---D--EGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGD--LG 242 (323)
Q Consensus 170 lL---~--~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~l~~~~~~~~~i~~--~g 242 (323)
++ . +.++.++..++++|..++..-........ .+++.|+..|. ..++..|+.++.+++. +.+..+.. ..
T Consensus 509 ~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~-~vl~~l~~~l~-~~v~~~A~~al~~l~~--~~~~~l~p~~~~ 584 (971)
T 2x1g_F 509 VLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP-PAINLLVRGLN-SSMSAQATLGLKELCR--DCQLQLKPYADP 584 (971)
T ss_dssp HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH-HHHHHHHHHHH-SSCHHHHHHHHHHHHH--HCHHHHHHHHHH
T ss_pred HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHhC-hHHHHHHHHHHHHHHH--HHHHhccccHHH
Confidence 43 2 23788999999999988753221111111 25566666664 7789999999999995 33444432 24
Q ss_pred CHHHHHHHHhccC-ChhHHHHHHHHHHHhcccCh-HhHHHHHhhcccHHHHHH----HhhcC--CHHHHHHHHHHHHHHh
Q 020640 243 GVSCMLRIIREST-CDRNKENCIAILHTICLSDR-TKWKAMREEESTHGTISK----LAQDG--TARAKRKATGILERLK 314 (323)
Q Consensus 243 ~i~~Lv~ll~~~~-~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~~~i~~L~~----ll~~~--~~~~~~~A~~~L~~l~ 314 (323)
.++.+..++..+. +...+..+..++..++..-+ +.....+. ..++++.+ +++.. ++..+......|..|+
T Consensus 585 ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~--~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~ 662 (971)
T 2x1g_F 585 LLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLD--IIVSPCFEELQAICQADSKTPAARIRTIFRLNMIS 662 (971)
T ss_dssp HHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHH--HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH--HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Confidence 6777777777532 36788888888888876432 22223322 34444444 33333 4445566666666665
Q ss_pred c
Q 020640 315 R 315 (323)
Q Consensus 315 ~ 315 (323)
.
T Consensus 663 ~ 663 (971)
T 2x1g_F 663 T 663 (971)
T ss_dssp H
T ss_pred H
Confidence 4
No 90
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=96.24 E-value=0.14 Score=44.68 Aligned_cols=137 Identities=11% Similarity=-0.002 Sum_probs=89.2
Q ss_pred CHhHHHHHHHHHHHhccCCchhHHHHhh--CchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHH-hcCCHHHHHH
Q 020640 175 HQSAMKDVASAIFNLCITHENKARAVRD--GGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIG-DLGGVSCMLR 249 (323)
Q Consensus 175 ~~~~~~~al~aL~~L~~~~~~~~~i~~~--g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~-~~g~i~~Lv~ 249 (323)
.+..+..+++++.|+-.+...+..+... ..++.+...+.+. .++..+..++.|++..-.....+- ...++..+..
T Consensus 161 ~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~ 240 (304)
T 3ebb_A 161 KPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLIST 240 (304)
T ss_dssp CHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Confidence 4567889999999998888888777653 2333333333322 578888899999998411000000 0114555566
Q ss_pred HHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhc-CCHHHHHHHHHHHHH
Q 020640 250 IIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD-GTARAKRKATGILER 312 (323)
Q Consensus 250 ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~A~~~L~~ 312 (323)
+++...+.+....++.+|.+|...+++ ..++.+.-++...+-+.... ..+++.+.+..+|..
T Consensus 241 il~~~~d~EalyR~LvALGtL~~~~~~-~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~ 303 (304)
T 3ebb_A 241 ILEVVQDLEATFRLLVALGTLISDDSN-AVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNL 303 (304)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTT
T ss_pred HHhccCCHHHHHHHHHHHHHHHhCChh-HHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHh
Confidence 666545588899999999999987654 56666555666666666655 378888888777653
No 91
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.11 Score=44.59 Aligned_cols=183 Identities=15% Similarity=0.133 Sum_probs=113.5
Q ss_pred HHHHh-cCCchhHHHHHHHHHHHhccChhhH---HHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccc
Q 020640 36 LLKKM-SATLPDQTEAAKELRLLTKRMPSFR---ALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN 111 (323)
Q Consensus 36 Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~---~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~ 111 (323)
+-+.| +.++..|.+|+..|..+....+... ..+.......+.+-..+. +.|..++..++.++..+...-.
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~------DsN~~v~~~al~~l~~~~~~~~ 87 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYIT------DSNVVAQEQAIVALNSLIDAFA 87 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTT------CSSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhc------cchHHHHHHHHHHHHHHHHHhh
Confidence 45677 4789999999999998875433211 011110123445556666 7799999999999987754221
Q ss_pred ---h-hhhh-hccCCcHHHHHH-HHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHH
Q 020640 112 ---N-KKLV-AETPMVIPLLMD-ALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASA 185 (323)
Q Consensus 112 ---~-~~~i-~~~~g~i~~Lv~-ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~a 185 (323)
. +... ...+.+++.|+. .+.+....++..+..++..+......... +++.++..+...++.++..++..
T Consensus 88 ~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~ 162 (278)
T 4ffb_C 88 SSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANC 162 (278)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHH
T ss_pred hhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHH
Confidence 1 1111 111225666664 35677888888888888777543322222 34666777788899999999999
Q ss_pred HHHhccCC--c--hhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc
Q 020640 186 IFNLCITH--E--NKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST 230 (323)
Q Consensus 186 L~~L~~~~--~--~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~ 230 (323)
|..+.... . +....+. ..++.+..++.+. .+|..|..++..+-.
T Consensus 163 l~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 163 VYELMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 98874321 1 1111122 2445567777765 689999888887766
No 92
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.00 E-value=0.18 Score=42.40 Aligned_cols=138 Identities=13% Similarity=0.105 Sum_probs=100.4
Q ss_pred HHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC-------chHHHHHHHHHHHhc--CHHHHHHHHhcCCHHHHHHH
Q 020640 180 KDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG-------VHVDELLAILAMLST--NHRAVEEIGDLGGVSCMLRI 250 (323)
Q Consensus 180 ~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~-------~~~~~a~~~L~~l~~--~~~~~~~i~~~g~i~~Lv~l 250 (323)
-+|+..|..++.+++.|..++++...--|..+|+.. .++-.+++++..|.+ +++.-..+.+.++++..++.
T Consensus 74 cnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLri 153 (268)
T 2fv2_A 74 CNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRI 153 (268)
T ss_dssp HHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHH
Confidence 346667788899999999999998777788888743 367889999999997 46888888999999999999
Q ss_pred HhccCChhHHHHHHHHHHHhcccChHhHHHHHhh-------cccHHHHHH-HhhcCCHHHHHHHHHHHHHHhcchhh
Q 020640 251 IRESTCDRNKENCIAILHTICLSDRTKWKAMREE-------ESTHGTISK-LAQDGTARAKRKATGILERLKRTVNL 319 (323)
Q Consensus 251 l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~-------~~~i~~L~~-ll~~~~~~~~~~A~~~L~~l~~~~~~ 319 (323)
++.|+ +-.|.-|..++..+-.++.+ ...+... ..++...+. +.+..+++.-+...++--.|++.+.+
T Consensus 154 me~Gs-elSKtvAtfIlqKIL~dd~G-L~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ra 228 (268)
T 2fv2_A 154 MESGS-ELSKTVATFILQKILLDDTG-LAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRA 228 (268)
T ss_dssp HHHSC-HHHHHHHHHHHHHHHHSHHH-HHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHH
T ss_pred Hhhcc-HHHHHHHHHHHHHHhccchh-HHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHH
Confidence 99886 88899999999988776654 2222111 122322332 33455777777777666666665543
No 93
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=95.91 E-value=1.1 Score=45.47 Aligned_cols=214 Identities=8% Similarity=0.025 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHh------cCCHHHHHHHHHHHHHhcCCCCchhhhhc-----cC
Q 020640 94 NLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALR------SGTIETRSNAAAALFTLSALDSNKEVIGK-----SG 162 (323)
Q Consensus 94 ~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~------~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-----~g 162 (323)
..+..|..+|..++..-. ..+... +++.+...+. +.+-..++.|..++..++.....+..-.. ..
T Consensus 376 s~R~aa~~~L~~l~~~~~--~~v~~~--~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE--VLVTNI--FLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH--HHHHHH--HHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred CcHHHHHHHHHHHHHHcc--hhHHHH--HHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 466677777777765432 222221 3444445554 44557788899999999753221111000 02
Q ss_pred ChHH----HHHHhhhc---CHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCH-
Q 020640 163 ALKP----LIDLLDEG---HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNH- 232 (323)
Q Consensus 163 ~i~~----Lv~lL~~~---~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~- 232 (323)
..+. ++..+.++ ++.++..++++|..++..-. ..... ..++.++..|.+. .++..|+.+|.+++...
T Consensus 452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~~~l~-~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~ 528 (960)
T 1wa5_C 452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--KAQLI-ELMPILATFLQTDEYVVYTYAAITIEKILTIRE 528 (960)
T ss_dssp HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--HHHHH-HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--HHHHH-HHHHHHHHHhCCCChhHHHHHHHHHHHHHhccc
Confidence 2232 33345555 78899999999999987532 12222 3677788888766 47899999999998741
Q ss_pred -------H-HHHHHHh--cCCHHHHHHHHhccCC--hh--HHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHh---
Q 020640 233 -------R-AVEEIGD--LGGVSCMLRIIRESTC--DR--NKENCIAILHTICLSDRTKWKAMREEESTHGTISKLA--- 295 (323)
Q Consensus 233 -------~-~~~~i~~--~g~i~~Lv~ll~~~~~--~~--~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll--- 295 (323)
+ .+..+.. ..+++.|+.++....+ .+ ..+.+..++..++....+...... ...++.|...+
T Consensus 529 ~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~--~~l~~~L~~~l~~~ 606 (960)
T 1wa5_C 529 SNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF--PQLLAQFIEIVTIM 606 (960)
T ss_dssp CSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH--HHHHHHHHHHHHHH
T ss_pred ccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHH
Confidence 1 2333322 2456777777775310 11 235566666665443222122221 12344444443
Q ss_pred -hcC-CHHHHHHHHHHHHHHhcc
Q 020640 296 -QDG-TARAKRKATGILERLKRT 316 (323)
Q Consensus 296 -~~~-~~~~~~~A~~~L~~l~~~ 316 (323)
++. ++........+|..+...
T Consensus 607 ~~~~~~~~~~~~~~e~l~~l~~~ 629 (960)
T 1wa5_C 607 AKNPSNPRFTHYTFESIGAILNY 629 (960)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHT
T ss_pred HhCCCCcHHHHHHHHHHHHHHhc
Confidence 222 556666666666666543
No 94
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=95.72 E-value=0.1 Score=44.57 Aligned_cols=180 Identities=12% Similarity=0.052 Sum_probs=115.9
Q ss_pred cCCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc---ccchhhhhh
Q 020640 41 SATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI---HDNNKKLVA 117 (323)
Q Consensus 41 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~---~~~~~~~i~ 117 (323)
+.|...+..|+..|......+++ .+.. .++.+++.+.-... +.+..+...++.+|..+.. ..+++-.-.
T Consensus 57 s~d~k~~~~ale~L~~~l~~~~~---~~~~---~lDll~kw~~lr~~--d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ 128 (266)
T 2of3_A 57 HKDFKQHLAALDSLVRLADTSPR---SLLS---NSDLLLKWCTLRFF--ETNPAALIKVLELCKVIVELIRDTETPMSQE 128 (266)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCHH---HHHH---THHHHHHHHHHHTT--SCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred CCCHHHHHHHHHHHHHHhhhChH---HHHH---HHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 45677788899999888754442 2222 24444443321001 5688899999998877632 122222221
Q ss_pred ccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhH
Q 020640 118 ETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKA 197 (323)
Q Consensus 118 ~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~ 197 (323)
+..-++|.|+.-+.+..+.++..+-.++..+... .-...+.+.+++-+++.+..++..++..+..+-......
T Consensus 129 ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~- 201 (266)
T 2of3_A 129 EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS- 201 (266)
T ss_dssp HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC-
Confidence 2223688888888888888999888888777531 111336677888888889999999999988874432211
Q ss_pred HHHhhCch---HHHHHHhhcC--chHHHHHHHHHHHhc--CHHHHHHH
Q 020640 198 RAVRDGGV---SVILKKIMDG--VHVDELLAILAMLST--NHRAVEEI 238 (323)
Q Consensus 198 ~i~~~g~v---~~Lv~ll~~~--~~~~~a~~~L~~l~~--~~~~~~~i 238 (323)
...++ +.+..++.+. .++..|+.++..+-. ++..++.+
T Consensus 202 ---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~l 246 (266)
T 2of3_A 202 ---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAA 246 (266)
T ss_dssp ---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred ---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 23477 8899999876 688989888876655 34444443
No 95
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=95.72 E-value=0.97 Score=39.66 Aligned_cols=194 Identities=8% Similarity=0.027 Sum_probs=141.7
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-Cchhhhhc--cCChHHHHHHhhh--cCHhHHHHHHHHHHHhccCCch
Q 020640 121 MVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGK--SGALKPLIDLLDE--GHQSAMKDVASAIFNLCITHEN 195 (323)
Q Consensus 121 g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~--~g~i~~Lv~lL~~--~~~~~~~~al~aL~~L~~~~~~ 195 (323)
+.+..|+..|..=+-+.++.+..+..++.... +++...++ ..- +.++..|-. +++++...+-..|+....+...
T Consensus 78 dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~-peil~~L~~gYe~~diAl~~G~mLRecir~e~l 156 (341)
T 1upk_A 78 GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ-QNILFMLLKGYESPEIALNCGIMLRECIRHEPL 156 (341)
T ss_dssp SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC-THHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHH
T ss_pred CHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcC-HHHHHHHHHhhccchhHhHHHHHHHHHHHhHHH
Confidence 47888888888889999999999999986543 22222222 112 333333333 3677888888889888888888
Q ss_pred hHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc-CHHHHHHHHhcC---CHHHHHHHHhccCChhHHHHHHHHHHH
Q 020640 196 KARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLG---GVSCMLRIIRESTCDRNKENCIAILHT 269 (323)
Q Consensus 196 ~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~-~~~~~~~i~~~g---~i~~Lv~ll~~~~~~~~~~~a~~~L~~ 269 (323)
...++..+.+-.+.+.+..+ ++...|..++..+-. +......+.... ....+-.++.++ +--+++.++..|..
T Consensus 157 a~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~-NYVTkRQSlKLLge 235 (341)
T 1upk_A 157 AKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKRQSLKLLGE 235 (341)
T ss_dssp HHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC-cchhHHHHHHHHHH
Confidence 88888888888888888876 677778888876654 565555666543 577777888854 47789999999999
Q ss_pred hcccChH--hHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640 270 ICLSDRT--KWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 316 (323)
Q Consensus 270 L~~~~~~--~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 316 (323)
+-.+..+ ....-+.+..-+..++.++++.+..++-.|-.+.+.+...
T Consensus 236 lLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 236 LLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred HHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence 9887643 2233344667888899999999999999998888877654
No 96
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=95.47 E-value=0.63 Score=40.82 Aligned_cols=214 Identities=11% Similarity=0.082 Sum_probs=143.9
Q ss_pred hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhh-cCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc
Q 020640 31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGES-HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 108 (323)
Q Consensus 31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~ 108 (323)
+.+..|+..|. =+.+.|..+.....++.+.....+...++- ..- |.++..|-.+ -+++++--.+=..|+.+..
T Consensus 78 dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~-peil~~L~~g----Ye~~diAl~~G~mLRecir 152 (341)
T 1upk_A 78 GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ-QNILFMLLKG----YESPEIALNCGIMLRECIR 152 (341)
T ss_dssp SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC-THHHHHHHHG----GGSTTTHHHHHHHHHHHHT
T ss_pred CHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcC-HHHHHHHHHh----hccchhHhHHHHHHHHHHH
Confidence 45555555553 356678888888888887665443222110 001 2333333222 3356666677777888888
Q ss_pred ccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhc-CCCCchhhhhc---cCChHHHHHHhhhcCHhHHHHHHH
Q 020640 109 HDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLS-ALDSNKEVIGK---SGALKPLIDLLDEGHQSAMKDVAS 184 (323)
Q Consensus 109 ~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~-~~~~~~~~i~~---~g~i~~Lv~lL~~~~~~~~~~al~ 184 (323)
++.-.+.+..++ .+-.+....+.++-++...|..++..|- .+......... .......-++|.+++=-++..++.
T Consensus 153 ~e~la~~iL~~~-~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK 231 (341)
T 1upk_A 153 HEPLAKIILWSE-QFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK 231 (341)
T ss_dssp SHHHHHHHHHSG-GGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred hHHHHHHHhccH-HHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 877666666665 5667889999999999999999999984 44433333332 235667778899999899999999
Q ss_pred HHHHhccCCchhHHHHh----hCchHHHHHHhhcC--chHHHHHHHHHHHhcC----HHHHHHHHhcCCHHHHHHHHh
Q 020640 185 AIFNLCITHENKARAVR----DGGVSVILKKIMDG--VHVDELLAILAMLSTN----HRAVEEIGDLGGVSCMLRIIR 252 (323)
Q Consensus 185 aL~~L~~~~~~~~~i~~----~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~----~~~~~~i~~~g~i~~Lv~ll~ 252 (323)
.|..|-.+..|-..+.. ..-+..++.+|++. .++..|.-++--...+ ++....++.+. ..|+.++.
T Consensus 232 LLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr--~kLl~fl~ 307 (341)
T 1upk_A 232 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQ--AKLIEFLS 307 (341)
T ss_dssp HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTH--HHHHHHHH
T ss_pred HHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHH--HHHHHHHH
Confidence 99999888877666543 25677888899877 6888898888777665 46666666553 44444444
No 97
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=95.38 E-value=0.47 Score=47.96 Aligned_cols=174 Identities=9% Similarity=-0.015 Sum_probs=107.2
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhh---hcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHH
Q 020640 132 SGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLD---EGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVI 208 (323)
Q Consensus 132 ~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~---~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~L 208 (323)
+.+-..++.++.++..++..-... ....++.++..+. ++++.++..+++++..++..-......+. .+++.+
T Consensus 460 ~~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~-~vl~~l 534 (963)
T 2x19_B 460 PYSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMIN-SVLPLV 534 (963)
T ss_dssp SCCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHT-TTHHHH
T ss_pred CCchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHH-HHHHHH
Confidence 346677888999999987543210 1234455555442 24678999999999988754222223333 588888
Q ss_pred HHHhhcCchHHHHHHHHHHHhcCHHHHHHHHh--cCCHHHHHHHHhccC-ChhHHHHHHHHHHHhcccCh-HhHHHHHhh
Q 020640 209 LKKIMDGVHVDELLAILAMLSTNHRAVEEIGD--LGGVSCMLRIIREST-CDRNKENCIAILHTICLSDR-TKWKAMREE 284 (323)
Q Consensus 209 v~ll~~~~~~~~a~~~L~~l~~~~~~~~~i~~--~g~i~~Lv~ll~~~~-~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~ 284 (323)
+..|.+..++..|+.++.+++. +.+..+.. ...++.|..++..+. +...+..+..++..+....+ +.....+
T Consensus 535 ~~~l~~~~V~~~A~~al~~l~~--~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~-- 610 (963)
T 2x19_B 535 LHALGNPELSVSSVSTLKKICR--ECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNL-- 610 (963)
T ss_dssp HHHTTCGGGHHHHHHHHHHHHH--HTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHH--
T ss_pred HHHhCCchHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHH--
Confidence 8888777889999999999995 22333321 134555566666422 36788888999998876442 3333443
Q ss_pred cccHHHHHHHhh----cC-CHHHHHHHHHHHHHHh
Q 020640 285 ESTHGTISKLAQ----DG-TARAKRKATGILERLK 314 (323)
Q Consensus 285 ~~~i~~L~~ll~----~~-~~~~~~~A~~~L~~l~ 314 (323)
...++++...+. .. +++.+......+..|+
T Consensus 611 ~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~ 645 (963)
T 2x19_B 611 HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLS 645 (963)
T ss_dssp HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 245655555443 22 5666665555555443
No 98
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=94.99 E-value=0.65 Score=41.05 Aligned_cols=130 Identities=10% Similarity=0.043 Sum_probs=92.4
Q ss_pred HHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhh-cC
Q 020640 97 EDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE-GH 175 (323)
Q Consensus 97 ~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~-~~ 175 (323)
..+...|.-|-.+.+.-.-+++.+| +..+...+.-++.++....++.|...+.....+..-. ...+|.++..+.. ++
T Consensus 261 tR~FDLL~LLmHdSnAIDGFVk~DG-v~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L-~e~LPFi~~~i~~h~e 338 (619)
T 3c2g_A 261 IRTFDLLGLLLHDSDAIDGFVRSDG-VGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL-ENILPFLLRLIEIHPD 338 (619)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHTTH-HHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC-TTHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhcccccccceeeccc-ceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc-cccchHHHHHhccCCC
Confidence 3344444444444445778888887 8888888889999999999999998875443222111 4578888888875 68
Q ss_pred HhHHHHHHHHHHHhccCCc-hhHHHHhhCchHHHHHHhhcC---------chHHHHHHHHHHH
Q 020640 176 QSAMKDVASAIFNLCITHE-NKARAVRDGGVSVILKKIMDG---------VHVDELLAILAML 228 (323)
Q Consensus 176 ~~~~~~al~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~---------~~~~~a~~~L~~l 228 (323)
.++.....+.|.|...+.. .+...+..|+++.|-..+... .-+..+|++++|-
T Consensus 339 DdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~ 401 (619)
T 3c2g_A 339 DEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC 401 (619)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred cceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence 8899999999999998885 455557889999998877632 1245566666554
No 99
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=94.85 E-value=0.98 Score=40.70 Aligned_cols=162 Identities=21% Similarity=0.241 Sum_probs=106.6
Q ss_pred HHHHHHHHhccChhh-HHHHhhhcCCHHHHHHhhccccc-----CCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcH
Q 020640 50 AAKELRLLTKRMPSF-RALFGESHDAIPQLLSPLSESKC-----ENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVI 123 (323)
Q Consensus 50 a~~~L~~l~~~~~~~-~~~i~~~~g~i~~Lv~lL~~~~~-----~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i 123 (323)
.+..|+..-+.++.. ...|. .+|+..|+++|..-.. ....+...+...+.+|..+-........+...+..+
T Consensus 87 ~L~sL~v~Lrt~~~sWV~~F~--~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i 164 (383)
T 3eg5_B 87 CLESLRVSLTSHPVSWVQTFG--AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGI 164 (383)
T ss_dssp HHHHHHHHHHHSCHHHHHHHH--HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHhhCccHHHHHHH--HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHH
Confidence 455555444444433 45664 5679999999853110 002355788888999999877777777788878889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCCC--c-hhhh----------hccCChHHHHHHhhh-cCHhHHHHHHHHHHHh
Q 020640 124 PLLMDALRSGTIETRSNAAAALFTLSALDS--N-KEVI----------GKSGALKPLIDLLDE-GHQSAMKDVASAIFNL 189 (323)
Q Consensus 124 ~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~--~-~~~i----------~~~g~i~~Lv~lL~~-~~~~~~~~al~aL~~L 189 (323)
..|+..+.+.++.++..++.+|..+|..++ + ...+ .+..-...+++.|+. .+.+.+..++..+-.+
T Consensus 165 ~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~l 244 (383)
T 3eg5_B 165 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL 244 (383)
T ss_dssp HHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999987654 2 2222 234557778888876 4667777777766666
Q ss_pred ccCCc---hhHH----HHhhCchHHHHHHhhc
Q 020640 190 CITHE---NKAR----AVRDGGVSVILKKIMD 214 (323)
Q Consensus 190 ~~~~~---~~~~----i~~~g~v~~Lv~ll~~ 214 (323)
....+ .|.. +... |+..++.-|+.
T Consensus 245 i~~~~dl~~R~~lR~ef~~~-Gl~~il~~lr~ 275 (383)
T 3eg5_B 245 ITPAEELDFRVHIRSELMRL-GLHQVLQELRE 275 (383)
T ss_dssp HTTCCCHHHHHHHHHHHHHT-THHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHC-ChHHHHHHHhc
Confidence 55443 2333 3344 45555555664
No 100
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.81 E-value=0.39 Score=41.89 Aligned_cols=165 Identities=18% Similarity=0.091 Sum_probs=96.9
Q ss_pred hhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHH-hhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccC-Cc
Q 020640 45 PDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLS-PLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETP-MV 122 (323)
Q Consensus 45 ~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~-lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~-g~ 122 (323)
+.+..++..++-+.. .+.....+.+ ...-..++. ++..... +..+..+..+++++.|+..+...+..+.... .+
T Consensus 117 ~~~fPvLDLlRl~~l-~p~~~~~~~~-~~~~~~l~~~l~~~~~~--~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~i 192 (304)
T 3ebb_A 117 DIVFPALDILRLSIK-HPSVNENFCN-EKEGAQFSSHLINLLNP--KGKPANQLLALRTFCNCFVGQAGQKLMMSQRESL 192 (304)
T ss_dssp TTCHHHHHHHHHHTT-SHHHHHHHHS-TTTHHHHHHHHHHTTCT--TSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHH
T ss_pred HhHHHHHHHHHHHHc-CccHHHHhhc-cccchHHHHHHHHhcCC--CCChHHHHHHHHHHHHccCCchhHHHHHHHHHHH
Confidence 345566677776664 4544455544 333333442 2221111 3456778999999999988887777766521 13
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhh-ccCChHHHHHHhhh-cCHhHHHHHHHHHHHhccCCchhHHHH
Q 020640 123 IPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIG-KSGALKPLIDLLDE-GHQSAMKDVASAIFNLCITHENKARAV 200 (323)
Q Consensus 123 i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~-~~g~i~~Lv~lL~~-~~~~~~~~al~aL~~L~~~~~~~~~i~ 200 (323)
++.+...+.+.+..++..++.++.|++.........- ...++..+..++.. .+.+....++-+|.+|...+.....+.
T Consensus 193 l~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~la 272 (304)
T 3ebb_A 193 MSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLA 272 (304)
T ss_dssp HHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHH
Confidence 3333444445688999999999999974311000010 11134444455543 488999999999999998766555555
Q ss_pred hh-CchHHHHHHhh
Q 020640 201 RD-GGVSVILKKIM 213 (323)
Q Consensus 201 ~~-g~v~~Lv~ll~ 213 (323)
+. |....+-++.+
T Consensus 273 k~l~~~~~v~~~~~ 286 (304)
T 3ebb_A 273 KSLGVDSQIKKYSS 286 (304)
T ss_dssp HHTTHHHHGGGGGG
T ss_pred HHcCHHHHHHHHHh
Confidence 54 44443333333
No 101
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=94.56 E-value=1.4 Score=44.69 Aligned_cols=211 Identities=14% Similarity=0.063 Sum_probs=118.4
Q ss_pred CCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHH---h--cCCHHHHHHHHHHHHHhcCCCCchhhhhccCChH
Q 020640 91 INPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDAL---R--SGTIETRSNAAAALFTLSALDSNKEVIGKSGALK 165 (323)
Q Consensus 91 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll---~--~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~ 165 (323)
.+...++.++.++..++..-.... . ..++.++.++ . +.++.++..+++++..++..-....... ..+++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~-~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l-~~vl~ 549 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----K-RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI-PPAIN 549 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH-HHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----h-HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHH
Confidence 467789999999999876433211 1 1344455444 3 2488999999999999874321111111 23567
Q ss_pred HHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHh--hCchHHHHHHhhcC----chHHHHHHHHHHHhcC--HHHHHH
Q 020640 166 PLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVR--DGGVSVILKKIMDG----VHVDELLAILAMLSTN--HRAVEE 237 (323)
Q Consensus 166 ~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~--~g~v~~Lv~ll~~~----~~~~~a~~~L~~l~~~--~~~~~~ 237 (323)
.|+..+ + +.++..|+.++.+++... +..+.- ...+..+..++..+ ..+.....++..++.. ++.+..
T Consensus 550 ~l~~~l-~--~~v~~~A~~al~~l~~~~--~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~ 624 (971)
T 2x1g_F 550 LLVRGL-N--SSMSAQATLGLKELCRDC--QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPK 624 (971)
T ss_dssp HHHHHH-H--SSCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred HHHHHh-C--hHHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 777777 2 689999999999999543 233322 14555666677663 3566667777766552 233222
Q ss_pred HHhcCCHHHHHH----HHhccC-ChhHHHHHHHHHHHhcccC----------------hHhHHHHHhhcccHHHHHHHhh
Q 020640 238 IGDLGGVSCMLR----IIREST-CDRNKENCIAILHTICLSD----------------RTKWKAMREEESTHGTISKLAQ 296 (323)
Q Consensus 238 i~~~g~i~~Lv~----ll~~~~-~~~~~~~a~~~L~~L~~~~----------------~~~~~~~~~~~~~i~~L~~ll~ 296 (323)
..+ ..++.++. +++... ++..+......+..|+..- ++...... ..+++.+..++.
T Consensus 625 ~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~i~~~l~~~l~ 701 (971)
T 2x1g_F 625 YLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVM--QRTMPIFKRIAE 701 (971)
T ss_dssp HHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHH--HTTHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHH--HHHHHHHHHHHH
Confidence 222 22344443 333221 2333444444444443210 01112222 357777777775
Q ss_pred c--CCHHHHHHHHHHHHHHhc
Q 020640 297 D--GTARAKRKATGILERLKR 315 (323)
Q Consensus 297 ~--~~~~~~~~A~~~L~~l~~ 315 (323)
. .++.+.+.+.+++..+..
T Consensus 702 ~~~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 702 MWVEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp HTTTCHHHHHHHHHHHHHHHH
T ss_pred hccccHHHHHHHHHHHHHHHH
Confidence 4 377999999999988664
No 102
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=94.48 E-value=0.22 Score=46.86 Aligned_cols=247 Identities=11% Similarity=0.076 Sum_probs=148.8
Q ss_pred HHHHHHHHh-cCCchhHHHHHHHHHHHhccChhhHHHHhh-hcCCHHHHHHhh--ccccc--CCCCCHHHHHHHHHHHHH
Q 020640 32 HFLSLLKKM-SATLPDQTEAAKELRLLTKRMPSFRALFGE-SHDAIPQLLSPL--SESKC--ENGINPNLQEDVITTLLN 105 (323)
Q Consensus 32 ~i~~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~~g~i~~Lv~lL--~~~~~--~~~~~~~~~~~a~~~L~~ 105 (323)
....|+..| +..+++|--|+..|+.+.+........... +....-.|+-+| .+..+ .|.--..+++.++++|..
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 556666666 577999999999999988654321100011 011112222222 22111 001235689999999998
Q ss_pred hccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhc-cCChHHHHHHhhhcCHhHHHHHHH
Q 020640 106 LSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK-SGALKPLIDLLDEGHQSAMKDVAS 184 (323)
Q Consensus 106 ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~al~ 184 (323)
+ .+-+.. . .++..++..+..+.=+++-.+.-.|..+ ...+.+ .++++.++..|.+.+++++..|+.
T Consensus 255 L-~hLp~e-----~-~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAe 321 (800)
T 3oc3_A 255 I-YPLIGP-----N-DIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAE 321 (800)
T ss_dssp H-TTTSCS-----C-CHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred H-HhCChh-----H-HHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCcccHHHHHHHH
Confidence 8 543332 1 2455555544566667777888888888 222222 567888888888889999999999
Q ss_pred HHHHhccCCchhHHHHhhCchHHHHHHhhc--C--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHH
Q 020640 185 AIFNLCITHENKARAVRDGGVSVILKKIMD--G--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNK 260 (323)
Q Consensus 185 aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~--~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~ 260 (323)
+|.-++ ..+....+ +..+-..|.+ + .........|+.|+..+.. .-.....+|.|..++++.- ..++
T Consensus 322 tLiPIA-~p~~l~~L-----L~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtI-TSVR 392 (800)
T 3oc3_A 322 LLCHFP-ITDSLDLV-----LEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPV-PEVR 392 (800)
T ss_dssp HHTTSC-CSSTHHHH-----HHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSS-HHHH
T ss_pred Hhhhhc-chhhHHHH-----HHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCc-HHHH
Confidence 999888 22222222 2334444443 2 3456667788888876531 1111256888999999654 8899
Q ss_pred HHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHH
Q 020640 261 ENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILE 311 (323)
Q Consensus 261 ~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~ 311 (323)
..++.+|..+. .....+ ....+++-..++++.+.+..+-+
T Consensus 393 ~AVL~TL~tfL--~~~~LR---------LIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 393 TSILNMVKNLS--EESIDF---------LVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHTTTCC--CHHHHH---------HHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hhhHHH---------HHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999998887 211121 22334566678888877766654
No 103
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=94.47 E-value=1.3 Score=37.74 Aligned_cols=184 Identities=9% Similarity=0.088 Sum_probs=112.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCC---chhhhh-c-cCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCc----hh
Q 020640 126 LMDALRSGTIETRSNAAAALFTLSALDS---NKEVIG-K-SGALKPLIDLLDEGHQSAMKDVASAIFNLCITHE----NK 196 (323)
Q Consensus 126 Lv~ll~~~~~~~~~~a~~~L~~L~~~~~---~~~~i~-~-~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~----~~ 196 (323)
+-.-|.+.+=..+..+...|..+..... ...... . ....+.+-+.+.+.+..+...++.+|..++.... .+
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 4456677777777788877777643211 111111 1 2245556667888899999999999988865331 11
Q ss_pred HH--HHhhCchHHHHHH-hhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 020640 197 AR--AVRDGGVSVILKK-IMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTIC 271 (323)
Q Consensus 197 ~~--i~~~g~v~~Lv~l-l~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~ 271 (323)
.. ..-...++.|+.- +.+. .++..+..++..++........ +++.+...+... +++++..++..|..+.
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~K-npkv~~~~l~~l~~~l 167 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKK-LPKLIAAAANCVYELM 167 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCS-CHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhcc-CHHHHHHHHHHHHHHH
Confidence 11 1223466777765 5555 4677777777666542111111 134444555644 5999999999988876
Q ss_pred ccCh-H--hHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 020640 272 LSDR-T--KWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 317 (323)
Q Consensus 272 ~~~~-~--~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 317 (323)
.... . ..+..+ ..+++.+..++.+.++.++..|..++-.+.++-
T Consensus 168 ~~fg~~~~~~k~~l--~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 168 AAFGLTNVNVQTFL--PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HHHTTTTCCHHHHH--HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred HHhCCCcCCchhHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 5321 1 112222 246677888899999999999999998887643
No 104
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=94.33 E-value=0.44 Score=43.87 Aligned_cols=131 Identities=17% Similarity=0.225 Sum_probs=93.3
Q ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcccc
Q 020640 31 DHFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD 110 (323)
Q Consensus 31 ~~i~~Lv~~l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~ 110 (323)
.....++...+++...++-|...|.++.++-|+.+ ..++..+++++. +++..++..|...|-.++.+
T Consensus 29 ~~y~~Il~~~kg~~k~K~LaaQ~I~kffk~FP~l~------~~Ai~a~lDLcE------Ded~~IR~qaik~Lp~~ck~- 95 (507)
T 3u0r_A 29 DAYQVILDGVKGGTKEKRLAAQFIPKFFKHFPELA------DSAINAQLDLCE------DEDVSIRRQAIKELPQFATG- 95 (507)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCGGGH------HHHHHHHHHHHT------CSSHHHHHHHHHHGGGGCCT-
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhH------HHHHHHHHHHHh------cccHHHHHHHHHhhHHHhhh-
Confidence 34445555556778888899999999999888865 345677999999 88999999999999999987
Q ss_pred chhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHH
Q 020640 111 NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIF 187 (323)
Q Consensus 111 ~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~ 187 (323)
++... +...|+++|+.+++.-....-.+|..|-..+. .+.+..|+.-+..+++.+++.++..|.
T Consensus 96 ~~i~k------iaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 96 ENLPR------VADILTQLLQTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLS 159 (507)
T ss_dssp TCHHH------HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hhhhh------HHHHHHHHHhccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 43222 45678899998887777767677666643221 234555555555556666766666663
No 105
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=94.04 E-value=0.27 Score=46.36 Aligned_cols=203 Identities=10% Similarity=0.062 Sum_probs=131.1
Q ss_pred CCCHHHHHHHHHHHHHhccccc---hhhhhhccCCcHHHHHHHH---hcC-------CHHHHHHHHHHHHHhcCCCCchh
Q 020640 90 GINPNLQEDVITTLLNLSIHDN---NKKLVAETPMVIPLLMDAL---RSG-------TIETRSNAAAALFTLSALDSNKE 156 (323)
Q Consensus 90 ~~~~~~~~~a~~~L~~ls~~~~---~~~~i~~~~g~i~~Lv~ll---~~~-------~~~~~~~a~~~L~~L~~~~~~~~ 156 (323)
++..+++..|+..|+.+-.... .+..-... .+.-.++.++ +.+ -.++++.|+.+|..+ .+-+..
T Consensus 185 dp~WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e- 261 (800)
T 3oc3_A 185 SYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP- 261 (800)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS-
T ss_pred CcchhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChh-
Confidence 6789999999999998754332 11111111 2233344433 111 368999999999999 654433
Q ss_pred hhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHH
Q 020640 157 VIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRA 234 (323)
Q Consensus 157 ~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~ 234 (323)
..++..|+..+..+..+++..++-.|..+ .+-... . .++++.++..|.+. +++..|+.+|..++ .++.
T Consensus 262 ----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL---~DLL~~-L-d~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-~p~~ 331 (800)
T 3oc3_A 262 ----NDIIEQLVGFLDSGDWQVQFSGLIALGYL---KEFVED-K-DGLCRKLVSLLSSPDEDIKLLSAELLCHFP-ITDS 331 (800)
T ss_dssp ----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT---GGGCCC-H-HHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-CSST
T ss_pred ----HHHHHHHHhhcCCCCeeehhhhHHHHHHH---HHHHHH-H-HHHHHHHHhhcCCcccHHHHHHHHHhhhhc-chhh
Confidence 34666676666777899999999999998 111111 1 25677788888765 78999999999998 2221
Q ss_pred HHHHHhcCCHHHHHHHHhccCC-hhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 020640 235 VEEIGDLGGVSCMLRIIRESTC-DRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERL 313 (323)
Q Consensus 235 ~~~i~~~g~i~~Lv~ll~~~~~-~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l 313 (323)
... ++..+-+.|.+-++ ..........|..|+..++. .......+|.|..++++.-..++..+..+|..+
T Consensus 332 l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~----a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tf 402 (800)
T 3oc3_A 332 LDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE----LSIPPERLKDIFPCFTSPVPEVRTSILNMVKNL 402 (800)
T ss_dssp HHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT----CCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTC
T ss_pred HHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc----cccChHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Confidence 111 23344444443221 22355667788888887642 112357899999999999999999988887665
Q ss_pred h
Q 020640 314 K 314 (323)
Q Consensus 314 ~ 314 (323)
.
T Consensus 403 L 403 (800)
T 3oc3_A 403 S 403 (800)
T ss_dssp C
T ss_pred H
Confidence 4
No 106
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=93.83 E-value=0.8 Score=41.27 Aligned_cols=146 Identities=17% Similarity=0.200 Sum_probs=95.3
Q ss_pred hhhhhhccCCcHHHHHHHHhc-----------CCHHHHHHHHHHHHHhcCCCCchhhhhc-cCChHHHHHHhhhcCHhHH
Q 020640 112 NKKLVAETPMVIPLLMDALRS-----------GTIETRSNAAAALFTLSALDSNKEVIGK-SGALKPLIDLLDEGHQSAM 179 (323)
Q Consensus 112 ~~~~i~~~~g~i~~Lv~ll~~-----------~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~ 179 (323)
....+. .+| +..|+.+|.. .+...+..++++|..+.-+......+.. ..++..|+..|.+..+.++
T Consensus 102 WV~~F~-~~G-l~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~ 179 (383)
T 3eg5_B 102 WVQTFG-AEG-LASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMM 179 (383)
T ss_dssp HHHHHH-HHH-HHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHH
T ss_pred HHHHHH-Hcc-HHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHH
Confidence 455665 456 7788888742 1346777889999998776666666666 7889999999999999999
Q ss_pred HHHHHHHHHhccCCc--h-hHHHHhh----------CchHHHHHHhhcC---chHHHHHHHHHHHhcCH-------HHHH
Q 020640 180 KDVASAIFNLCITHE--N-KARAVRD----------GGVSVILKKIMDG---VHVDELLAILAMLSTNH-------RAVE 236 (323)
Q Consensus 180 ~~al~aL~~L~~~~~--~-~~~i~~~----------g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~~-------~~~~ 236 (323)
..++..|..+|..++ + ...++++ .-...++..|+++ +.+..++..+-.+...+ ..|.
T Consensus 180 ~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ 259 (383)
T 3eg5_B 180 IDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRS 259 (383)
T ss_dssp HHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999998764 3 4444322 3456677777764 33444444444444432 3444
Q ss_pred HHHhcCCHHHHHHHHhccCChhHH
Q 020640 237 EIGDLGGVSCMLRIIRESTCDRNK 260 (323)
Q Consensus 237 ~i~~~g~i~~Lv~ll~~~~~~~~~ 260 (323)
++...| +..++.-++...++.+.
T Consensus 260 ef~~~G-l~~il~~lr~~~~~~L~ 282 (383)
T 3eg5_B 260 ELMRLG-LHQVLQELREIENEDMK 282 (383)
T ss_dssp HHHHTT-HHHHHHHHTTSCCHHHH
T ss_pred HHHHCC-hHHHHHHHhcCCChhHH
Confidence 445556 55555557654434443
No 107
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=93.63 E-value=0.66 Score=38.69 Aligned_cols=127 Identities=17% Similarity=0.209 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHhcCCCCchhhhhc-cCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCc--h-hHHHHhh--------
Q 020640 135 IETRSNAAAALFTLSALDSNKEVIGK-SGALKPLIDLLDEGHQSAMKDVASAIFNLCITHE--N-KARAVRD-------- 202 (323)
Q Consensus 135 ~~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~--~-~~~i~~~-------- 202 (323)
.+.+..++.+|..+..+......+.. .+++..|+..|.++++.++..++..|..+|..++ + ...++++
T Consensus 68 ~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~ 147 (233)
T 2f31_A 68 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD 147 (233)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhC
Confidence 46677888899888766666666666 7789999999999999999999999999988764 4 4444322
Q ss_pred --CchHHHHHHhhcC---chHHHHHHHHHHHhcCH-------HHHHHHHhcCCHHHHHHHHhccCChhHHHH
Q 020640 203 --GGVSVILKKIMDG---VHVDELLAILAMLSTNH-------RAVEEIGDLGGVSCMLRIIRESTCDRNKEN 262 (323)
Q Consensus 203 --g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~~-------~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 262 (323)
.-...+++.+++. +.+..++..+-.+...+ ..|.++...| +..++.-++...++.+..+
T Consensus 148 e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~G-l~~il~~l~~~~~~~L~~Q 218 (233)
T 2f31_A 148 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG-LHQVLQELREIENEDMKVQ 218 (233)
T ss_dssp TSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTT-HHHHHHHHHHCCCHHHHHH
T ss_pred CcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC-hHHHHHHHhccCCHHHHHH
Confidence 2445567666644 23444444444444432 3444444555 6666666665444555443
No 108
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=93.42 E-value=4.9 Score=40.47 Aligned_cols=214 Identities=15% Similarity=0.123 Sum_probs=121.3
Q ss_pred CchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCc
Q 020640 43 TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMV 122 (323)
Q Consensus 43 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~ 122 (323)
++..+..++.++..++..-... . ...++.++..+..-. ++++.++..++.++..++..-........ .+
T Consensus 462 ~w~~~eaal~al~~i~~~~~~~-----~-~~~l~~l~~~l~~l~---~~~~~vr~~~~~~l~~~~~~l~~~~~~l~--~v 530 (963)
T 2x19_B 462 SWQHTEALLYGFQSIAETIDVN-----Y-SDVVPGLIGLIPRIS---ISNVQLADTVMFTIGALSEWLADHPVMIN--SV 530 (963)
T ss_dssp CHHHHHHHHHHHHHHTTSCCSS-----C-CSHHHHHHHHGGGSC---CCSHHHHHHHHHHHHHTHHHHHHCHHHHT--TT
T ss_pred chHHHHHHHHHHHHHHhhcCch-----h-hHHHHHHHHHHHhCC---CCcHHHHHHHHHHHHHHHHHHHhCHHHHH--HH
Confidence 3556777888888877543221 1 234555555553221 34688999999999988753221123343 37
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhc--cCChHHHHHHhhhc--CHhHHHHHHHHHHHhccCC--chh
Q 020640 123 IPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK--SGALKPLIDLLDEG--HQSAMKDVASAIFNLCITH--ENK 196 (323)
Q Consensus 123 i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~--~g~i~~Lv~lL~~~--~~~~~~~al~aL~~L~~~~--~~~ 196 (323)
++.++..+.+ +.++..|+.++.+++.. .+..+.. ...++.|..++..+ +...+..+..++..++..- +..
T Consensus 531 l~~l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~ 606 (963)
T 2x19_B 531 LPLVLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEI 606 (963)
T ss_dssp HHHHHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHH
Confidence 8888888855 78999999999999842 3333432 33455555666653 5678888888888887543 233
Q ss_pred HHHHhhCchHHHHHHhh----cC---chHH---HHHHHHHHHhcC-----H-H--------------HHHHH--HhcCCH
Q 020640 197 ARAVRDGGVSVILKKIM----DG---VHVD---ELLAILAMLSTN-----H-R--------------AVEEI--GDLGGV 244 (323)
Q Consensus 197 ~~i~~~g~v~~Lv~ll~----~~---~~~~---~a~~~L~~l~~~-----~-~--------------~~~~i--~~~g~i 244 (323)
...++ ..++++...+. .. +.+. ..+.+|..+... + . .+..+ .....+
T Consensus 607 ~~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (963)
T 2x19_B 607 LKNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVF 685 (963)
T ss_dssp HHHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHH
Confidence 33332 25555555443 11 1222 233333333321 1 0 00011 122345
Q ss_pred HHHHHHHhc-cCChhHHHHHHHHHHHhcc
Q 020640 245 SCMLRIIRE-STCDRNKENCIAILHTICL 272 (323)
Q Consensus 245 ~~Lv~ll~~-~~~~~~~~~a~~~L~~L~~ 272 (323)
+.+..++.. .++..+.+.++.++..+..
T Consensus 686 ~~~~~~l~~~~~~~~v~e~~~~~l~~~~~ 714 (963)
T 2x19_B 686 QLIQKVLSKWLNDAQVVEAVCAIFEKSVK 714 (963)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHH
Confidence 555566643 2346788999998888754
No 109
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=93.36 E-value=3 Score=34.61 Aligned_cols=141 Identities=21% Similarity=0.226 Sum_probs=93.6
Q ss_pred HHHHHHHhccCh-hhHHHHhhhcCCHHHHHHhhccccc-CC----CCCHHHHHHHHHHHHHhccccchhhhhhccCCcHH
Q 020640 51 AKELRLLTKRMP-SFRALFGESHDAIPQLLSPLSESKC-EN----GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIP 124 (323)
Q Consensus 51 ~~~L~~l~~~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~-~~----~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~ 124 (323)
+..|.-.-+.++ .-...| . .+|+..|+++|..... +. ..+...+..++.+|..+.........+......+.
T Consensus 22 L~~L~v~Lrt~~~~Wv~~F-~-~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~ 99 (233)
T 2f31_A 22 LESLRVSLNNNPVSWVQTF-G-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGIL 99 (233)
T ss_dssp HHHHHHHHHHSCHHHHHHH-H-HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHH
T ss_pred HHHHhHhHhcCCcHHHHHH-H-HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHH
Confidence 344443333333 445667 5 6889999999864211 00 11456788888999988777777777777777888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCC--c-hhhh----------hccCChHHHHHHhhh-cCHhHHHHHHHHHHHhc
Q 020640 125 LLMDALRSGTIETRSNAAAALFTLSALDS--N-KEVI----------GKSGALKPLIDLLDE-GHQSAMKDVASAIFNLC 190 (323)
Q Consensus 125 ~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~--~-~~~i----------~~~g~i~~Lv~lL~~-~~~~~~~~al~aL~~L~ 190 (323)
.++..+.++++.++..++..|..+|..++ + ...+ .+..-...+++.++. ++.+.+..++..+-.+.
T Consensus 100 ~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li 179 (233)
T 2f31_A 100 LLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALI 179 (233)
T ss_dssp HHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 88888888999999999999999987654 3 3322 223355667777764 45566666666666665
Q ss_pred cCC
Q 020640 191 ITH 193 (323)
Q Consensus 191 ~~~ 193 (323)
...
T Consensus 180 ~~~ 182 (233)
T 2f31_A 180 TPA 182 (233)
T ss_dssp TTC
T ss_pred CCC
Confidence 544
No 110
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=92.64 E-value=1.6 Score=44.77 Aligned_cols=217 Identities=10% Similarity=0.038 Sum_probs=125.4
Q ss_pred hHHHHHHHHh-cCCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc-
Q 020640 31 DHFLSLLKKM-SATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI- 108 (323)
Q Consensus 31 ~~i~~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~- 108 (323)
..+..++..+ +.+...|.+|-..|..+-. + .++...+..+|.. +.++.++..|+..|.+.-.
T Consensus 16 ~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~-~----------p~~~~~l~~iL~~-----s~~~~vr~~aa~~Lk~~i~~ 79 (1049)
T 3m1i_C 16 ALLDQVVSTFYQGSGVQQKQAQEILTKFQD-N----------PDAWQKADQILQF-----STNPQSKFIALSILDKLITR 79 (1049)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-S----------TTGGGGHHHHHHH-----CSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHh-C----------chHHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHHh
Confidence 3455555444 4555677788888877754 3 3455566667754 4578999999999987642
Q ss_pred -----ccchhhhhhccCCcHHHHHHHHhcC-----CHHHHHHHHHHHHHhcCCCCchhhhhc-cCChHHHHHHhhhcCHh
Q 020640 109 -----HDNNKKLVAETPMVIPLLMDALRSG-----TIETRSNAAAALFTLSALDSNKEVIGK-SGALKPLIDLLDEGHQS 177 (323)
Q Consensus 109 -----~~~~~~~i~~~~g~i~~Lv~ll~~~-----~~~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~ 177 (323)
.++.+..+... ++..+...-..+ +..++...+.++..++..+-. .. .+.++.|+..+. .++.
T Consensus 80 ~W~~l~~~~~~~ir~~--ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p----~~Wp~ll~~L~~~~~-~~~~ 152 (1049)
T 3m1i_C 80 KWKLLPNDHRIGIRNF--VVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP----QNWPEFIPELIGSSS-SSVN 152 (1049)
T ss_dssp TGGGSCHHHHHHHHHH--HHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT----TTCTTHHHHHHHHHT-TCHH
T ss_pred hCccCCHHHHHHHHHH--HHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc----ccchHHHHHHHHHHc-cChH
Confidence 12233333321 333333221111 356778888888888753211 12 467888998886 4556
Q ss_pred HHHHHHHHHHHhccCC---------chh-----HHHHhh--CchHHHHHHhhcC---chHHHHHHHHHHHhcCHHHHHHH
Q 020640 178 AMKDVASAIFNLCITH---------ENK-----ARAVRD--GGVSVILKKIMDG---VHVDELLAILAMLSTNHRAVEEI 238 (323)
Q Consensus 178 ~~~~al~aL~~L~~~~---------~~~-----~~i~~~--g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~~~~~~~i 238 (323)
.+..++.+|..|+..- ..+ ..+.+. ..++.+..++.+. .++..++.++.+....-+. ..+
T Consensus 153 ~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~-~~~ 231 (1049)
T 3m1i_C 153 VCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY-RYI 231 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHH
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH-HHH
Confidence 6777888887776321 111 112111 1223334444432 4677788888776553211 224
Q ss_pred HhcCCHHHHHHHHhccCChhHHHHHHHHHHHhccc
Q 020640 239 GDLGGVSCMLRIIRESTCDRNKENCIAILHTICLS 273 (323)
Q Consensus 239 ~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~ 273 (323)
.+...++.+.+.+. .+ +.++..|+.+|..+...
T Consensus 232 ~~~~ll~~l~~~~l-~~-~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 232 YETNILELLSTKFM-TS-PDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HSSSHHHHHHTHHH-HS-HHHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHhC-CC-HhHHHHHHHHHHHHHhC
Confidence 45566776663332 23 78888999999888765
No 111
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=91.77 E-value=1.7 Score=37.02 Aligned_cols=175 Identities=10% Similarity=0.034 Sum_probs=104.8
Q ss_pred CCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHH----hcCCHHHHHHHHHHHHHhcC---CCCchhhhhc-c
Q 020640 90 GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDAL----RSGTIETRSNAAAALFTLSA---LDSNKEVIGK-S 161 (323)
Q Consensus 90 ~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll----~~~~~~~~~~a~~~L~~L~~---~~~~~~~i~~-~ 161 (323)
+.|..-+..|+..|..... .+...+.. .+..++..+ .+.+..+...++.+|..+.. ..+.+..-.+ .
T Consensus 57 s~d~k~~~~ale~L~~~l~--~~~~~~~~---~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~ 131 (266)
T 2of3_A 57 HKDFKQHLAALDSLVRLAD--TSPRSLLS---NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVS 131 (266)
T ss_dssp CSCHHHHHHHHHHHHHHHH--HCHHHHHH---THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhh--hChHHHHH---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 4466666677776664321 12222222 234444433 36688888888888887631 1111111111 2
Q ss_pred CChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHh-hCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHH
Q 020640 162 GALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVR-DGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEI 238 (323)
Q Consensus 162 g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~-~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i 238 (323)
-.+|.|++-+.+..+.++..+-.+|..++. +.. ....+.++.-+++. ..++.++..+..+-... +-.
T Consensus 132 ~~lP~LveKlGd~k~~vR~~~r~il~~l~~-------v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~-G~~-- 201 (266)
T 2of3_A 132 AFVPYLLLKTGEAKDNMRTSVRDIVNVLSD-------VVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNA-GIS-- 201 (266)
T ss_dssp HHHHHHHHGGGCSSHHHHHHHHHHHHHHHH-------HHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH-CSG--
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHH-------HCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc-CCC--
Confidence 367999998888888899988888877643 111 12444555555555 56777887777775421 100
Q ss_pred HhcCCH---HHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHH
Q 020640 239 GDLGGV---SCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAM 281 (323)
Q Consensus 239 ~~~g~i---~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~ 281 (323)
..+++ +.+..++.+.+ ..++..|..++..+-....+.....
T Consensus 202 -~~~~l~~~~~ia~ll~D~d-~~VR~aAl~~lve~y~~~Gd~v~k~ 245 (266)
T 2of3_A 202 -PLKSLSVEKTVAPFVGDKD-VNVRNAAINVLVACFKFEGDQMWKA 245 (266)
T ss_dssp -GGGGGCHHHHHGGGGGCSS-HHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred -ccccccchHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 23467 99999999654 8999999999987665543333333
No 112
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=91.66 E-value=7.4 Score=39.76 Aligned_cols=218 Identities=11% Similarity=0.070 Sum_probs=131.3
Q ss_pred hhhhHHHHHHHHh-cCCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640 28 ADRDHFLSLLKKM-SATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 106 (323)
Q Consensus 28 ~~~~~i~~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l 106 (323)
.+-..+..++..+ +.+...|.+|-..|..+-. ++ ++...+..+|.. +.++.++..|+.+|.+.
T Consensus 13 ~dv~~Le~av~~ly~p~~~~r~~A~~~L~~~q~-sp----------~aw~~~~~iL~~-----s~~~~vR~faa~~Lk~~ 76 (1023)
T 4hat_C 13 LDIALLDQVVSTFYQGSGVQQKQAQEILTKFQD-NP----------DAWQKADQILQF-----STNPQSKFIALSILDKL 76 (1023)
T ss_dssp CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-CT----------TGGGGHHHHHHH-----CCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCChHHHHHHHHHHHHHHc-Cc----------cHHHHHHHHhcC-----CCCHHHHHHHHHHHHHH
Confidence 3445777777777 4444577778888877764 33 445555566643 55789999999999875
Q ss_pred cc------ccchhhhhhccCCcHHHHHHHHhcC-----CHHHHHHHHHHHHHhcCCCCchhhhhc-cCChHHHHHHhhhc
Q 020640 107 SI------HDNNKKLVAETPMVIPLLMDALRSG-----TIETRSNAAAALFTLSALDSNKEVIGK-SGALKPLIDLLDEG 174 (323)
Q Consensus 107 s~------~~~~~~~i~~~~g~i~~Lv~ll~~~-----~~~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~~ 174 (323)
-. .++.+..+... ++..+......+ ..-++...+.++..++..+-. .. .+.++.++.++..
T Consensus 77 I~~~W~~L~~e~~~~Ir~~--Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p----~~Wp~~l~dL~~~l~~- 149 (1023)
T 4hat_C 77 ITRKWKLLPNDHRIGIRNF--VVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP----QNWPEFIPELIGSSSS- 149 (1023)
T ss_dssp HHHHGGGSCHHHHHHHHHH--HHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTT----TTCTTHHHHHHHHTTT-
T ss_pred HHhhhhcCCHHHHHHHHHH--HHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhCh----hhchHHHHHHHHHhcC-
Confidence 33 22234444332 444444432221 345566677788877643210 12 5678888888865
Q ss_pred CHhHHHHHHHHHHHhccC---------CchhHH-H----Hhh--CchHHHHHHhhcC---chHHHHHHHHHHHhcCHHHH
Q 020640 175 HQSAMKDVASAIFNLCIT---------HENKAR-A----VRD--GGVSVILKKIMDG---VHVDELLAILAMLSTNHRAV 235 (323)
Q Consensus 175 ~~~~~~~al~aL~~L~~~---------~~~~~~-i----~~~--g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~~~~~ 235 (323)
++......+..|..|+.. ...|.. + .+. ..++.+..++.+. .+...++.++.....-=+ -
T Consensus 150 ~~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~-i 228 (1023)
T 4hat_C 150 SVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIP-Y 228 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSC-T
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCC-H
Confidence 345567777777766432 111221 1 111 2333344444432 456777787777766311 2
Q ss_pred HHHHhcCCHHHHH-HHHhccCChhHHHHHHHHHHHhcc
Q 020640 236 EEIGDLGGVSCML-RIIRESTCDRNKENCIAILHTICL 272 (323)
Q Consensus 236 ~~i~~~g~i~~Lv-~ll~~~~~~~~~~~a~~~L~~L~~ 272 (323)
..+++.+.++.+. .++.. +..+..|+.+|..+..
T Consensus 229 ~~i~~~~ll~~l~~~~L~~---~~~r~~A~ecL~eIv~ 263 (1023)
T 4hat_C 229 RYIYETNILELLSTKFMTS---PDTRAITLKCLTEVSN 263 (1023)
T ss_dssp HHHHSSSHHHHHHTHHHHS---HHHHHHHHHHHHHHHT
T ss_pred HHhcchhHHHHHHHHHcCC---HHHHHHHHHHHHHHHc
Confidence 3466778899999 88762 7899999999999987
No 113
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=91.40 E-value=7.7 Score=34.82 Aligned_cols=161 Identities=21% Similarity=0.247 Sum_probs=102.7
Q ss_pred HHHHHHHhccCh-hhHHHHhhhcCCHHHHHHhhccccc-CCC----CCHHHHHHHHHHHHHhccccchhhhhhccCCcHH
Q 020640 51 AKELRLLTKRMP-SFRALFGESHDAIPQLLSPLSESKC-ENG----INPNLQEDVITTLLNLSIHDNNKKLVAETPMVIP 124 (323)
Q Consensus 51 ~~~L~~l~~~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~-~~~----~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~ 124 (323)
+..|.-.-+.++ .....| . .+|+..|+++|..... +.. .+...+..++.+|..+.........+......+.
T Consensus 26 L~~L~v~Lrt~~~~Wv~~F-~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~ 103 (386)
T 2bnx_A 26 LESLRVSLNNNPVSWVQTF-G-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGIL 103 (386)
T ss_dssp HHHHHHHHHHSCHHHHHHH-H-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHH
T ss_pred HHHHhHHHhcCCcHHHHHH-H-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHH
Confidence 444443333333 344567 4 5789999988863211 001 1456788888999988777777777777777888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCC--c-hhhh----------hccCChHHHHHHhhh-cCHhHHHHHHHHHHHhc
Q 020640 125 LLMDALRSGTIETRSNAAAALFTLSALDS--N-KEVI----------GKSGALKPLIDLLDE-GHQSAMKDVASAIFNLC 190 (323)
Q Consensus 125 ~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~--~-~~~i----------~~~g~i~~Lv~lL~~-~~~~~~~~al~aL~~L~ 190 (323)
.++..+.+.++.++..++.+|..+|..++ + ...+ .+..-...+++.+.. .+.+.+..++..+-.+.
T Consensus 104 ~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv 183 (386)
T 2bnx_A 104 LLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALI 183 (386)
T ss_dssp HHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 88888888899999999999999987654 3 2222 233456667777764 45667777776666665
Q ss_pred cCCc---hhH----HHHhhCchHHHHHHhhc
Q 020640 191 ITHE---NKA----RAVRDGGVSVILKKIMD 214 (323)
Q Consensus 191 ~~~~---~~~----~i~~~g~v~~Lv~ll~~ 214 (323)
...+ .|. ++... |+..++.-|+.
T Consensus 184 ~~~~dl~~R~~LR~Ef~~~-GL~~il~~Lr~ 213 (386)
T 2bnx_A 184 TPAEELDFRVHIRSELMRL-GLHQVLQELRE 213 (386)
T ss_dssp TTCSCHHHHHHHHHHHHHT-THHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHC-ChHHHHHHHhc
Confidence 5543 222 23344 55555566654
No 114
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=90.86 E-value=8.3 Score=34.18 Aligned_cols=114 Identities=18% Similarity=0.146 Sum_probs=85.8
Q ss_pred HHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHH
Q 020640 50 AAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDA 129 (323)
Q Consensus 50 a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~l 129 (323)
+...|.-+. ++.+.-.-|++ .+|+..+..+.. -++.++.+.+++.|...|....-+..-.+ ..+|.++..
T Consensus 263 ~FDLL~LLm-HdSnAIDGFVk-~DGv~~I~Tvin------YpN~~l~RaG~KLLLQVSDaksL~~t~L~--e~LPFi~~~ 332 (619)
T 3c2g_A 263 TFDLLGLLL-HDSDAIDGFVR-SDGVGAITTVVQ------YPNNDLIRAGCKLLLQVSDAKALAKTPLE--NILPFLLRL 332 (619)
T ss_dssp HHHHHHHHC-CSHHHHHHHHH-TTHHHHHHHHTT------SSCHHHHHHHHHHHHHHTTCGGGGTSCCT--THHHHHHHH
T ss_pred HHHHHHHHh-cccccccceee-cccceeEEEEee------cCCcHHHHhhhheeeeecchHHHhhcccc--ccchHHHHH
Confidence 344444444 55555677899 899999999988 67889999999999998865543333333 358888888
Q ss_pred Hh-cCCHHHHHHHHHHHHHhcCCCCc-hhhhhccCChHHHHHHhhh
Q 020640 130 LR-SGTIETRSNAAAALFTLSALDSN-KEVIGKSGALKPLIDLLDE 173 (323)
Q Consensus 130 l~-~~~~~~~~~a~~~L~~L~~~~~~-~~~i~~~g~i~~Lv~lL~~ 173 (323)
++ +++.++.....+.|.|...+... ++..+..|++..|-+.+..
T Consensus 333 i~~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~k 378 (619)
T 3c2g_A 333 IEIHPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISK 378 (619)
T ss_dssp HHHCCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred hccCCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhh
Confidence 86 67899999999999999877654 5555669999999988753
No 115
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=90.60 E-value=2.7 Score=37.82 Aligned_cols=128 Identities=9% Similarity=0.128 Sum_probs=83.0
Q ss_pred HhHHHHHHHHHHHhccCCchhHHHHhh-CchHHHHHHhhcC--chHHHHHHHHHHHhcCHH--H-HHHHHh---------
Q 020640 176 QSAMKDVASAIFNLCITHENKARAVRD-GGVSVILKKIMDG--VHVDELLAILAMLSTNHR--A-VEEIGD--------- 240 (323)
Q Consensus 176 ~~~~~~al~aL~~L~~~~~~~~~i~~~-g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~--~-~~~i~~--------- 240 (323)
......+++||..+..+..+...++.. +++..++..|.+. .++..++.+|..+|..+. + -..+.+
T Consensus 72 ~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~ 151 (386)
T 2bnx_A 72 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD 151 (386)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhC
Confidence 456778899999988777777777765 7888888888766 456778888888888542 4 333322
Q ss_pred -cCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChH-----hHHHHHhhcccHHHHHHHhhcCCHHHH
Q 020640 241 -LGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT-----KWKAMREEESTHGTISKLAQDGTARAK 303 (323)
Q Consensus 241 -~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~-----~~~~~~~~~~~i~~L~~ll~~~~~~~~ 303 (323)
..-...+++.++.+.+...+..++..+-.+....++ ..+.-+...|..+.+-++-..+++.+.
T Consensus 152 e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~ 220 (386)
T 2bnx_A 152 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMK 220 (386)
T ss_dssp TSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHH
T ss_pred chhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHH
Confidence 124666888887544466777777777777776653 222223345555555545443455443
No 116
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=89.99 E-value=3.3 Score=42.37 Aligned_cols=143 Identities=10% Similarity=0.044 Sum_probs=85.0
Q ss_pred CchhHHHHHHHHHHHhccChhh-HHHHhhhcCCHHHHHHhhcccccCCCCCH--HHHHHHHHHHHHhccccchhhhhhcc
Q 020640 43 TLPDQTEAAKELRLLTKRMPSF-RALFGESHDAIPQLLSPLSESKCENGINP--NLQEDVITTLLNLSIHDNNKKLVAET 119 (323)
Q Consensus 43 ~~~~~~~a~~~L~~l~~~~~~~-~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~--~~~~~a~~~L~~ls~~~~~~~~i~~~ 119 (323)
++..++.++.++..++..-.+. -..+.. .+++.|++++.... ..++ .++..++.++...+.--........
T Consensus 466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~--~vi~~Ll~l~~~~~---~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~- 539 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVV--TVIKDLLDLCVKKR---GKDNKAVVASDIMYVVGQYPRFLKAHWNFLR- 539 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHH--HHHHHHHHHHHHCC---SHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH-
T ss_pred CHHHHHHHHHHHHHHHcCCCchhHHHHHH--HHHHHHHHhhhccc---cCcchHHHHHHHHHHHHHHHHHHhccHHHHH-
Confidence 4778899999999988654332 122222 36788888775311 1122 3444566777765432111222333
Q ss_pred CCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhc------cCChHHHHHHhhh----cCHhHHHHHHHHHHHh
Q 020640 120 PMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK------SGALKPLIDLLDE----GHQSAMKDVASAIFNL 189 (323)
Q Consensus 120 ~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~------~g~i~~Lv~lL~~----~~~~~~~~al~aL~~L 189 (323)
. ++..|+..+...++.++..|++++.+|+. +++..++. ...++.++..+.. -+......+..++..+
T Consensus 540 ~-vl~~L~~~l~~~~~~v~~~A~~al~~l~~--~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~v 616 (1023)
T 4hat_C 540 T-VILKLFEFMHETHEGVQDMACDTFIKIVQ--KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGII 616 (1023)
T ss_dssp H-HHHHHHHHTTCSCHHHHHHHHHHHHHHHH--HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHhhcCCHHHHHHHHHHHHHHHH--HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 1 56666677777789999999999999986 34444432 1234555443332 3566667778888887
Q ss_pred ccCCc
Q 020640 190 CITHE 194 (323)
Q Consensus 190 ~~~~~ 194 (323)
...-+
T Consensus 617 i~~~~ 621 (1023)
T 4hat_C 617 ISEER 621 (1023)
T ss_dssp HTTCC
T ss_pred HHhCC
Confidence 66543
No 117
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=89.79 E-value=14 Score=37.92 Aligned_cols=173 Identities=13% Similarity=0.059 Sum_probs=97.8
Q ss_pred CHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc----cccch-hhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 020640 74 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLS----IHDNN-KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTL 148 (323)
Q Consensus 74 ~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls----~~~~~-~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L 148 (323)
.+..+..++..... ..++.++..++-++..|. ..... ...++. . +...+...+...+.+-+..++++|.|+
T Consensus 392 ~l~~~~~l~~~~~~--~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~-~-i~~~l~~~~~~~~~~~~~~~LkaLGN~ 467 (1056)
T 1lsh_A 392 SLSYARELLNTSFI--RNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQ-P-LHDLLSQSSDRAKEEEIVLALKALGNA 467 (1056)
T ss_dssp HHHHHHHHHTCHHH--HTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTH-H-HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccc--ccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH-H-HHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence 34445555552110 234556666666665553 22221 112222 1 344455556677888888999999999
Q ss_pred cCCCCchhhhhccCChHHHHHHhhh-------cCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC----ch
Q 020640 149 SALDSNKEVIGKSGALKPLIDLLDE-------GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG----VH 217 (323)
Q Consensus 149 ~~~~~~~~~i~~~g~i~~Lv~lL~~-------~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~----~~ 217 (323)
... ..++.|.+++.. ....++..|+.+|+.++...+ .. +-+.+..++.+. ++
T Consensus 468 g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p---~~----v~~il~~i~~n~~e~~Ev 530 (1056)
T 1lsh_A 468 GQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP---RK----VQEIVLPIFLNVAIKSEL 530 (1056)
T ss_dssp TCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH---HH----HHHHHHHHHHCTTSCHHH
T ss_pred CCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch---HH----HHHHHHHHhcCCCCChHH
Confidence 652 257777777642 135688889999998874322 11 223566766543 45
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChH
Q 020640 218 VDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT 276 (323)
Q Consensus 218 ~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~ 276 (323)
|..|+.+|. -.+|.. ..++.+...+....+..+.......|.+++.....
T Consensus 531 RiaA~~~Lm--~t~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 531 RIRSCIVFF--ESKPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp HHHHHHHHH--HTCCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHH--HHCcCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 655655543 233321 12455666666544566777777777777776543
No 118
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=88.55 E-value=0.37 Score=40.56 Aligned_cols=85 Identities=15% Similarity=0.085 Sum_probs=48.9
Q ss_pred hccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHH
Q 020640 58 TKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIET 137 (323)
Q Consensus 58 ~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~ 137 (323)
...++..|..... .=....|..+++ ++++.++..++..| . .+.|..++++++..+
T Consensus 60 ~d~~~~VR~~AA~-~l~~~~l~~L~~------D~~~~VR~~aA~~L---~---------------~~~L~~ll~D~d~~V 114 (244)
T 1lrv_A 60 ADPFWERRAIAVR-YSPVEALTPLIR------DSDEVVRRAVAYRL---P---------------REQLSALMFDEDREV 114 (244)
T ss_dssp TCSSHHHHHHHHT-TSCGGGGGGGTT------CSSHHHHHHHHTTS---C---------------SGGGGGTTTCSCHHH
T ss_pred cCCCHHHHHHHHH-hCCHHHHHHHcc------CcCHHHHHHHHHHC---C---------------HHHHHHHHcCCCHHH
Confidence 3334555655555 323444555555 67778887777532 1 123556677778888
Q ss_pred HHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHH
Q 020640 138 RSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVAS 184 (323)
Q Consensus 138 ~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~ 184 (323)
+..++..+ . .+.|..++++++..++..++.
T Consensus 115 R~~aA~~l---~--------------~~~L~~L~~D~d~~VR~~aA~ 144 (244)
T 1lrv_A 115 RITVADRL---P--------------LEQLEQMAADRDYLVRAYVVQ 144 (244)
T ss_dssp HHHHHHHS---C--------------TGGGGGGTTCSSHHHHHHHHH
T ss_pred HHHHHHhC---C--------------HHHHHHHHcCCCHHHHHHHHH
Confidence 87777632 1 123444556667777776666
No 119
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=88.07 E-value=16 Score=37.19 Aligned_cols=212 Identities=8% Similarity=-0.005 Sum_probs=118.9
Q ss_pred CHHHHHHHHHHHHHhccccch-hhhhhc----cCCcHHHHHHHHh-----cCCHHHHHHHHHHHHHhcCCCCchhhhhcc
Q 020640 92 NPNLQEDVITTLLNLSIHDNN-KKLVAE----TPMVIPLLMDALR-----SGTIETRSNAAAALFTLSALDSNKEVIGKS 161 (323)
Q Consensus 92 ~~~~~~~a~~~L~~ls~~~~~-~~~i~~----~~g~i~~Lv~ll~-----~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~ 161 (323)
+....+.++.+|+.++..-.+ ...+.. .+.+++.+..+++ .+++.++..+++++...+.+-.. ..
T Consensus 456 ~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~-----~~ 530 (980)
T 3ibv_A 456 SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY-----ES 530 (980)
T ss_dssp HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT-----CC
T ss_pred CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc-----Cc
Confidence 567889999999988764321 111100 1124455556655 56899999999999998754332 23
Q ss_pred CChHHHHHHhhh------cCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--------c-----------
Q 020640 162 GALKPLIDLLDE------GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--------V----------- 216 (323)
Q Consensus 162 g~i~~Lv~lL~~------~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--------~----------- 216 (323)
..+++++..+-+ +++.++..|..++.++|..... .+ .+.++.++..+.+- .
T Consensus 531 ~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~--~L--~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~ 606 (980)
T 3ibv_A 531 AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK--QV--VNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNS 606 (980)
T ss_dssp TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT--TC--SSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHH
T ss_pred hhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH--Hh--hhHHHHHHHHHHHhhcCcCCCCCcccccccchhh
Confidence 456666666544 4678999999999999875432 12 13445555544311 0
Q ss_pred -----------hHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHH----HHhccC---ChhH-HHHHHHHHHHhcccChH
Q 020640 217 -----------HVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLR----IIREST---CDRN-KENCIAILHTICLSDRT 276 (323)
Q Consensus 217 -----------~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~----ll~~~~---~~~~-~~~a~~~L~~L~~~~~~ 276 (323)
....|++.|...... ++.+....+ ..++.+++ .+.... ++.. ....+.++..++..-++
T Consensus 607 ~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~-~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~ 685 (980)
T 3ibv_A 607 SIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCD-SLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPA 685 (980)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH-HHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCS
T ss_pred hcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCc
Confidence 023355555544443 343433333 23444443 332211 1212 12445556666654321
Q ss_pred h------HHHHHhhcccHHHHHHHhh--cCCHHHHHHHHHHHHHHhc
Q 020640 277 K------WKAMREEESTHGTISKLAQ--DGTARAKRKATGILERLKR 315 (323)
Q Consensus 277 ~------~~~~~~~~~~i~~L~~ll~--~~~~~~~~~A~~~L~~l~~ 315 (323)
. +...+ ..+.+.+...+. ..+..+++++...++.+-.
T Consensus 686 ~~~~~~p~~~~f--~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~ 730 (980)
T 3ibv_A 686 RGSEEVAWLASF--NKASDEIFLILDRMGFNEDIRGAVRFTSGRIIN 730 (980)
T ss_dssp CC-CCCSHHHHH--HHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTT
T ss_pred ccCCCCcHHHHH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 0 22232 246666666665 4589999999999988764
No 120
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=87.76 E-value=15 Score=37.78 Aligned_cols=218 Identities=14% Similarity=0.066 Sum_probs=131.3
Q ss_pred hhhhHHHHHHHHh-cCCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640 28 ADRDHFLSLLKKM-SATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 106 (323)
Q Consensus 28 ~~~~~i~~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l 106 (323)
.+-..+..++..+ +.+...|.+|-..|..+-. ++ ++...+..+|.. +.++.++..|+.+|.+.
T Consensus 25 ~Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~-sp----------~aw~~~~~iL~~-----s~~~~vR~fAa~~L~~~ 88 (1073)
T 3gjx_A 25 LDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKE-HP----------DAWTRVDTILEF-----SQNMNTKYYGLQILENV 88 (1073)
T ss_dssp CSHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSC-CS----------CHHHHHTCC--------CCSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc-Cc----------hHHHHHHHHhcC-----CCCHHHHHHHHHHHHHH
Confidence 3445777777777 3556678888888877664 44 334445555653 55889999999999876
Q ss_pred cc------ccchhhhhhccCCcHHHHHHHHhc-----CCHHHHHHHHHHHHHhcCC--CCchhhhhccCChHHHHHHhhh
Q 020640 107 SI------HDNNKKLVAETPMVIPLLMDALRS-----GTIETRSNAAAALFTLSAL--DSNKEVIGKSGALKPLIDLLDE 173 (323)
Q Consensus 107 s~------~~~~~~~i~~~~g~i~~Lv~ll~~-----~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~lL~~ 173 (323)
-. .++.+..+... ++..+...-.. .++.++...+.++..++.. ++. =.+.++.++.++..
T Consensus 89 I~~~W~~L~~e~~~~LR~~--Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~-----Wp~fi~dLv~~~~~ 161 (1073)
T 3gjx_A 89 IKTRWKILPRNQCEGIKKY--VVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKH-----WPTFISDIVGASRT 161 (1073)
T ss_dssp HHHTGGGSCHHHHHHHHHH--HHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTT-----CTTHHHHHHHHHHH
T ss_pred HHhhhhhCCHHHHHHHHHH--HHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhh-----ccHHHHHHHHHhCC
Confidence 33 12234444332 44444443322 2466777888888888642 221 14577788887764
Q ss_pred cCHhHHHHHHHHHHHhccC--C-------chhH-HH---HhhCchHHHHHHh----hcC---chHHHHHHHHHHHhcCHH
Q 020640 174 GHQSAMKDVASAIFNLCIT--H-------ENKA-RA---VRDGGVSVILKKI----MDG---VHVDELLAILAMLSTNHR 233 (323)
Q Consensus 174 ~~~~~~~~al~aL~~L~~~--~-------~~~~-~i---~~~g~v~~Lv~ll----~~~---~~~~~a~~~L~~l~~~~~ 233 (323)
++......+..|..|+.. + ..|. .+ +.. -++.++.++ ... .+...++.+|..+..-=+
T Consensus 162 -~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~-~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~ 239 (1073)
T 3gjx_A 162 -SESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCN-EFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP 239 (1073)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHH-TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC
T ss_pred -CHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH-HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC
Confidence 455677788888887654 1 1111 11 121 244455444 322 456677788887777311
Q ss_pred HHHHHHhcCCHHHHH-HHHhccCChhHHHHHHHHHHHhcccC
Q 020640 234 AVEEIGDLGGVSCML-RIIRESTCDRNKENCIAILHTICLSD 274 (323)
Q Consensus 234 ~~~~i~~~g~i~~Lv-~ll~~~~~~~~~~~a~~~L~~L~~~~ 274 (323)
-..+++.+.++.|+ .++. ++..+..|+.+|..+....
T Consensus 240 -i~~i~~~~ll~~L~~~~L~---~~~~r~aA~dcL~eIv~k~ 277 (1073)
T 3gjx_A 240 -LGYIFETKLISTLIYKFLN---VPMFRNVSLKCLTEIAGVS 277 (1073)
T ss_dssp -THHHHSSSHHHHHHHHTSS---SHHHHHHHHHHHHHHHHSC
T ss_pred -HHHhccchHHHHHHHHhcC---ChHHHHHHHHHHHHHHhcc
Confidence 13467778788774 5554 3789999999999998753
No 121
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=86.82 E-value=10 Score=34.97 Aligned_cols=117 Identities=14% Similarity=0.134 Sum_probs=67.2
Q ss_pred cCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHH
Q 020640 174 GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRII 251 (323)
Q Consensus 174 ~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll 251 (323)
++...+..|+..+...-.+.+.... .++..++.++.+. .++..|...|..+|.+ +....+ +..|+++|
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~~----~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~ki-----aDvL~QlL 109 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELAD----SAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRV-----ADILTQLL 109 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGHH----HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHH-----HHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHH----HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhH-----HHHHHHHH
Confidence 4667777777777666554443222 2455677777665 4677777777777776 333333 45677777
Q ss_pred hccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHH
Q 020640 252 RESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGIL 310 (323)
Q Consensus 252 ~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L 310 (323)
+..+ +.-....-.+|..+-..++. +.+..|..-+..+++.+++++...|
T Consensus 110 qtdd-~~E~~~V~~sL~sllk~Dpk---------~tl~~lf~~i~~~~e~~Rer~lkFi 158 (507)
T 3u0r_A 110 QTDD-SAEFNLVNNALLSIFKMDAK---------GTLGGLFSQILQGEDIVRERAIKFL 158 (507)
T ss_dssp TCCC-HHHHHHHHHHHHHHHHHCHH---------HHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hccc-hHHHHHHHHHHHHHHhcChH---------HHHHHHHHHHcccchHHHHHHHHHH
Confidence 7433 44444555555555555532 2334444444445666676655555
No 122
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=85.94 E-value=6.3 Score=32.72 Aligned_cols=131 Identities=10% Similarity=-0.043 Sum_probs=85.3
Q ss_pred CCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHH-HHhcCCHHHHHHHHHHHHHhcC--CCCchhhhhccCChHH
Q 020640 90 GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMD-ALRSGTIETRSNAAAALFTLSA--LDSNKEVIGKSGALKP 166 (323)
Q Consensus 90 ~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~-ll~~~~~~~~~~a~~~L~~L~~--~~~~~~~i~~~g~i~~ 166 (323)
++..+++..|+.+|..+ . ....+++.+-. +-..++=.+++.++.++..++. +++ ..++.
T Consensus 82 ~~~deVR~~Av~lLg~~-~---------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--------~~l~~ 143 (240)
T 3l9t_A 82 SDVYQVRMYAVFLFGYL-S---------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--------KALPI 143 (240)
T ss_dssp CSSHHHHHHHHHHHHHT-T---------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--------TTHHH
T ss_pred CcchHHHHHHHHHHHhc-c---------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--------HHHHH
Confidence 55678999999988766 2 01114554544 3445678999999999999874 222 26788
Q ss_pred HHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc-CHHHHHHHHh
Q 020640 167 LIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGD 240 (323)
Q Consensus 167 Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~-~~~~~~~i~~ 240 (323)
+..++.+++..++..|...+.--+.....+.. -.-.++.|-.+..++ -+++.....|..+++ +|+-...+++
T Consensus 144 ~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~d--p~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~ 218 (240)
T 3l9t_A 144 IDEWLKSSNLHTRRAATEGLRIWTNRPYFKEN--PNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELK 218 (240)
T ss_dssp HHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTC--HHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHhhHHHhccchhhcC--HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHH
Confidence 88999999999999999887543322110000 001233333344444 478889999999999 5776666665
No 123
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=85.47 E-value=9.7 Score=38.87 Aligned_cols=186 Identities=8% Similarity=0.001 Sum_probs=96.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcC----CCCchhhhhccCChHHHHHH----hhhc-------------------C
Q 020640 123 IPLLMDALRSGTIETRSNAAAALFTLSA----LDSNKEVIGKSGALKPLIDL----LDEG-------------------H 175 (323)
Q Consensus 123 i~~Lv~ll~~~~~~~~~~a~~~L~~L~~----~~~~~~~i~~~g~i~~Lv~l----L~~~-------------------~ 175 (323)
++.++.+...++.++...++.....++. .+..+.... ..++.|+.. +.-+ +
T Consensus 346 l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~--~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d 423 (1049)
T 3m1i_C 346 HQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYE--EICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKE 423 (1049)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGH--HHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCC
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHH--HHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhcc
Confidence 4555555566677777778777777765 322222221 233344433 2110 0
Q ss_pred H---hHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC----chHHHHHHHHHHHhcC--HHHHHHHHhcCCHHH
Q 020640 176 Q---SAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG----VHVDELLAILAMLSTN--HRAVEEIGDLGGVSC 246 (323)
Q Consensus 176 ~---~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~----~~~~~a~~~L~~l~~~--~~~~~~i~~~g~i~~ 246 (323)
. ..+..+..+|..++..... .++.. ..+.+-..+... ..++.++.++..++.. +.....+. ..+++.
T Consensus 424 ~d~~~~~~~~~~~L~~l~~~~~~--~~l~~-v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l-~~v~~~ 499 (1049)
T 3m1i_C 424 SDTIQLYKSEREVLVYLTHLNVI--DTEEI-MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKD 499 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHH--HHHHH-HHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHH
T ss_pred chHHHHHHHHHHHHHHHHccCHH--HHHHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHH-HHHHHH
Confidence 0 1233455566666532211 11111 223333344321 4588899999988864 22111211 113444
Q ss_pred HHHHHhcc----CChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 020640 247 MLRIIRES----TCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 317 (323)
Q Consensus 247 Lv~ll~~~----~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 317 (323)
|..+.... +.+.++..+++++...+..-... ...+ ..+++.|++.+++.++.++..|+.++.+++...
T Consensus 500 l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l--~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~ 571 (1049)
T 3m1i_C 500 LLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFL--RTVILKLFEFMHETHEGVQDMACDTFIKIVQKC 571 (1049)
T ss_dssp HHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHH--HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH-HHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 44433211 11334445777777665432121 1233 256777888888889999999999999999753
No 124
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=84.33 E-value=38 Score=34.37 Aligned_cols=269 Identities=9% Similarity=-0.009 Sum_probs=139.5
Q ss_pred HHHHHHHHhc-C---CchhHHHHHHHHHHHhcc-Chh----hHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHH
Q 020640 32 HFLSLLKKMS-A---TLPDQTEAAKELRLLTKR-MPS----FRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITT 102 (323)
Q Consensus 32 ~i~~Lv~~l~-~---~~~~~~~a~~~L~~l~~~-~~~----~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~ 102 (323)
+.......+. + +..+|.-|+.+|.+..+. +++ .+..+.+ .|++++..... ..+...++.+.+.+
T Consensus 41 aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~------~ll~~l~~~~~-~~~~~~IrnKL~~~ 113 (980)
T 3ibv_A 41 GWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRD------SVWSYIKELSF-LDEPAYISNAVQHL 113 (980)
T ss_dssp HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHH------HHHHHHHHCCS-TTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHH------HHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 3444445553 1 356677777777766541 112 2222222 24444432210 02345677777777
Q ss_pred HHHhccccchhhhhhccCCcHHHHHHHHhcCCH-HHHHHHHHHHHHhcCC--C-C--------c-----hhhhhcc---C
Q 020640 103 LLNLSIHDNNKKLVAETPMVIPLLMDALRSGTI-ETRSNAAAALFTLSAL--D-S--------N-----KEVIGKS---G 162 (323)
Q Consensus 103 L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~-~~~~~a~~~L~~L~~~--~-~--------~-----~~~i~~~---g 162 (323)
+..+....-.. .. +.+++-++.++..++. ......+++|..+... + . . +..+.+. .
T Consensus 114 la~l~~~~~p~---~W-p~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~ 189 (980)
T 3ibv_A 114 LTLLFLQLYPS---NW-NDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSD 189 (980)
T ss_dssp HHHHHHHHTTT---TC-TTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHhCcc---cC-chHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHH
Confidence 77776532100 11 3467777888776443 3445556666644321 0 0 0 1111111 1
Q ss_pred ChHHHHHHhhh----cCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcCchHHHHHHHHHHHhcC---HHHH
Q 020640 163 ALKPLIDLLDE----GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTN---HRAV 235 (323)
Q Consensus 163 ~i~~Lv~lL~~----~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~l~~~---~~~~ 235 (323)
+++....+|.. .++.++..++.+|.....--+ ...+++...++.+..++.++.+++.|+.+|..+... ++.+
T Consensus 190 i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-~~~i~~~~ll~~l~~~L~~~~~r~~A~ecL~ei~~k~~~~~~k 268 (980)
T 3ibv_A 190 IVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN-INLIVNEPCMNLLYSFLQIEELRCAACETMTEIVNKKMKPLEK 268 (980)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-HHHHHCHHHHHHHHHHTTSHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC-HHhhhcchHHHHHHHHcCChHHHHHHHHHHHHHHHcCCChhhH
Confidence 13333444433 577888889999887755322 334455678888888888888899999999988773 5565
Q ss_pred HHHHhcCCHHHHHHHHhc-cCChhHHHHHHHHHHHhcc------cCh-----H---hHHHHHhhcccHHHHHHHhhcCCH
Q 020640 236 EEIGDLGGVSCMLRIIRE-STCDRNKENCIAILHTICL------SDR-----T---KWKAMREEESTHGTISKLAQDGTA 300 (323)
Q Consensus 236 ~~i~~~g~i~~Lv~ll~~-~~~~~~~~~a~~~L~~L~~------~~~-----~---~~~~~~~~~~~i~~L~~ll~~~~~ 300 (323)
..+++.=.+...+..+.. ..+.+..+.-+..+..++. ..+ + .....+ .+.++.++.+..++++
T Consensus 269 ~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l--~~ll~~lL~~~~~~~d 346 (980)
T 3ibv_A 269 LNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQL--YNLFPYLIRYLSDDYD 346 (980)
T ss_dssp HHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHH--HHTHHHHHHHHTCSSH
T ss_pred HHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHH--HHHHHHHHHHhCCCch
Confidence 555543111222221221 2224444444444333221 111 1 111222 3678888888888877
Q ss_pred HHHHHHHHHHHHHh
Q 020640 301 RAKRKATGILERLK 314 (323)
Q Consensus 301 ~~~~~A~~~L~~l~ 314 (323)
++-..+...+..+.
T Consensus 347 eVs~~t~~Fw~~~l 360 (980)
T 3ibv_A 347 ETSTAVFPFLSDLL 360 (980)
T ss_dssp HHHHTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 77666655554443
No 125
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=82.62 E-value=9.9 Score=31.55 Aligned_cols=144 Identities=13% Similarity=0.042 Sum_probs=89.3
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHH-HhhhcCHhHHHHHHHHHHHhcc-CCchhHHH
Q 020640 122 VIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLID-LLDEGHQSAMKDVASAIFNLCI-THENKARA 199 (323)
Q Consensus 122 ~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~al~aL~~L~~-~~~~~~~i 199 (323)
.++....+.+++..+++..|+.+|..+ . . ....++.+.. +..+++-.+++.+..++..++. .+..+
T Consensus 72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~--~------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--- 139 (240)
T 3l9t_A 72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-S--K------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--- 139 (240)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHT-T--T------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHhc-c--C------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH---
Confidence 344445566777789999999887777 2 1 1225566665 4445688999999999998874 22221
Q ss_pred HhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHh
Q 020640 200 VRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTK 277 (323)
Q Consensus 200 ~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~ 277 (323)
.++.+.....++ .++..|...+.--+..+.- -.+...+-.++.-+..+++..++...+..|..++..+|+.
T Consensus 140 ----~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~---k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~ 212 (240)
T 3l9t_A 140 ----ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYF---KENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDL 212 (240)
T ss_dssp ----THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTT---TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred ----HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchh---hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHH
Confidence 556677777776 4566666554432221100 0000112233333333445889999999999999999987
Q ss_pred HHHHHhh
Q 020640 278 WKAMREE 284 (323)
Q Consensus 278 ~~~~~~~ 284 (323)
+..++..
T Consensus 213 V~~~~~~ 219 (240)
T 3l9t_A 213 VKIELKN 219 (240)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 7777654
No 126
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=82.32 E-value=5.2 Score=30.28 Aligned_cols=72 Identities=7% Similarity=0.097 Sum_probs=55.8
Q ss_pred CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640 243 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 315 (323)
Q Consensus 243 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~ 315 (323)
++..|.+-+... ++.++..|+.+|-.+..+........+....++..|++++...++.++++...++.....
T Consensus 43 a~rai~Krl~~~-n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 43 CLRSIMRRVNHK-DPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-ChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 356677777755 488999999999888887655455555566788889998888899999999998887663
No 127
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=81.69 E-value=53 Score=34.13 Aligned_cols=202 Identities=11% Similarity=0.011 Sum_probs=112.5
Q ss_pred CchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc------ccchhhhh
Q 020640 43 TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI------HDNNKKLV 116 (323)
Q Consensus 43 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~------~~~~~~~i 116 (323)
+...|.+|-..|..+-.. + .+...+...|... +.++.++..|+.+|.+.-. .++.+..|
T Consensus 26 ~~~~r~~Ae~~L~~~~~~-p----------~~~~~~~~~L~~~----s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I 90 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEK-C----------PICVPCGLRLAEK----TQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYL 90 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHH-C----------TTHHHHHHHHTST----TSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhC-c----------hHHHHHHHHHHcc----CCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 455688888888777542 2 2333344434311 5688999999999987632 12233333
Q ss_pred hccCCcHHHHHHHHhc-------CCHHHHHHHHHHHHHhcCCCCchhhhhc-cCChHHHHHHhhhcCHhHHHHHHHHHHH
Q 020640 117 AETPMVIPLLMDALRS-------GTIETRSNAAAALFTLSALDSNKEVIGK-SGALKPLIDLLDEGHQSAMKDVASAIFN 188 (323)
Q Consensus 117 ~~~~g~i~~Lv~ll~~-------~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~al~aL~~ 188 (323)
-+ .++..+.. ....++...+.++..++..+-. .+ .+.++.|++++.. +...+..++.+|..
T Consensus 91 r~------~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p----~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~ 159 (1204)
T 3a6p_A 91 KN------SVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP----QHWPDMLIELDTLSKQ-GETQTELVMFILLR 159 (1204)
T ss_dssp HH------HHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST----TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHH
T ss_pred HH------HHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc----ccchHHHHHHHHHhcC-CHHHHHHHHHHHHH
Confidence 32 23444432 3577888888898888754211 12 5678888888876 45667788888888
Q ss_pred hccC---C----chhHH----HHhh---CchHHHHHHhhcC---------------------chHHHHHHHHHHHhcCHH
Q 020640 189 LCIT---H----ENKAR----AVRD---GGVSVILKKIMDG---------------------VHVDELLAILAMLSTNHR 233 (323)
Q Consensus 189 L~~~---~----~~~~~----i~~~---g~v~~Lv~ll~~~---------------------~~~~~a~~~L~~l~~~~~ 233 (323)
|+.. . ..+.. .+.. ..++.+..++.+. .+...++.++.+...--.
T Consensus 160 L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~ 239 (1204)
T 3a6p_A 160 LAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS 239 (1204)
T ss_dssp HHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC
T ss_pred HHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC
Confidence 8643 1 11111 1111 1222233333221 123334444443333111
Q ss_pred HHHHHHhcC--CHHHHHHHHhccCChhHHHHHHHHHHHhcccC
Q 020640 234 AVEEIGDLG--GVSCMLRIIRESTCDRNKENCIAILHTICLSD 274 (323)
Q Consensus 234 ~~~~i~~~g--~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~ 274 (323)
-..+.+.. .++.+..++. ++.++..|+.+|..+....
T Consensus 240 -~~~i~~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 240 -MSHITAENCKLLEILCLLLN---EQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp -HHHHHTTTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCC
T ss_pred -HHHHHhccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCC
Confidence 12233332 5666665544 2778999999999999855
No 128
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=79.70 E-value=6.9 Score=30.47 Aligned_cols=72 Identities=3% Similarity=0.071 Sum_probs=55.6
Q ss_pred CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhc-CCHHHHHHHHHHHHHHhc
Q 020640 243 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD-GTARAKRKATGILERLKR 315 (323)
Q Consensus 243 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~A~~~L~~l~~ 315 (323)
++..|.+-|+..+ +.++..|+.+|-.+..+-...+...+....++..|++++.. .++.+++++..++..-..
T Consensus 53 A~ral~krl~~~n-~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 53 CLKAIMKRVNHKV-PHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 3566777777554 88999999999998887545555555567788899998876 478999999988887664
No 129
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=77.71 E-value=70 Score=33.20 Aligned_cols=256 Identities=6% Similarity=-0.037 Sum_probs=138.5
Q ss_pred CchhHHHHHHHHHHHhcc-----ChhhHHHHhhhcCCHHHHHHhhcccccC-CCCCHHHHHHHHHHHHHhccccchhhhh
Q 020640 43 TLPDQTEAAKELRLLTKR-----MPSFRALFGESHDAIPQLLSPLSESKCE-NGINPNLQEDVITTLLNLSIHDNNKKLV 116 (323)
Q Consensus 43 ~~~~~~~a~~~L~~l~~~-----~~~~~~~i~~~~g~i~~Lv~lL~~~~~~-~~~~~~~~~~a~~~L~~ls~~~~~~~~i 116 (323)
+..+|.-|+..|.+.... +++.+..+.+ . +++.+...... ......++.+.+.++..++..+-..
T Consensus 60 ~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~--~----ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~--- 130 (1204)
T 3a6p_A 60 VAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKN--S----VMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ--- 130 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHH--H----HHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT---
T ss_pred CHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH--H----HHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc---
Confidence 467788899999988643 3344444444 2 44444321000 0135788888888888887653211
Q ss_pred hccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC---CC----chh-----hhhc--cCChHHHHHHhhh---------
Q 020640 117 AETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL---DS----NKE-----VIGK--SGALKPLIDLLDE--------- 173 (323)
Q Consensus 117 ~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~---~~----~~~-----~i~~--~g~i~~Lv~lL~~--------- 173 (323)
.=+.+++.|+.++++ ++.....+..+|..|+.. .+ .+. .+.+ ..+++.+..++..
T Consensus 131 -~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~ 208 (1204)
T 3a6p_A 131 -HWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVK 208 (1204)
T ss_dssp -TCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -cchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 113478888888876 556677788888888532 11 111 1111 1223333333432
Q ss_pred ----------cCHhHHHHHHHHHHHhccCCchhHHHHhh--CchHHHHHHhhcCchHHHHHHHHHHHhcC---HHHHHHH
Q 020640 174 ----------GHQSAMKDVASAIFNLCITHENKARAVRD--GGVSVILKKIMDGVHVDELLAILAMLSTN---HRAVEEI 238 (323)
Q Consensus 174 ----------~~~~~~~~al~aL~~L~~~~~~~~~i~~~--g~v~~Lv~ll~~~~~~~~a~~~L~~l~~~---~~~~~~i 238 (323)
++..+...++.++.+...--+. ..+.+. ..++.+..++.+..++..|+.+|..+... ++.+..+
T Consensus 209 ~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~-~~i~~~~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s~~~~~~~~~~l 287 (1204)
T 3a6p_A 209 TDTSQESKAQANCRVGVAALNTLAGYIDWVSM-SHITAENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPL 287 (1204)
T ss_dssp TCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH-HHHHTTTSHHHHHHHHGGGCTTTHHHHHHHHHHHHTCCSCHHHHGGG
T ss_pred ccccchhhhhhhHHHHHHHHHHHHHHHhccCH-HHHHhccchHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCChhhHHHH
Confidence 1234566677777654332221 222332 25666777777778999999999999873 3444444
Q ss_pred Hhc---CCHHHHHHHHhc-c----C--ChhHHHHHHHHHHHhcccChHhHHHHHh----------hcccHHHHHHHhhcC
Q 020640 239 GDL---GGVSCMLRIIRE-S----T--CDRNKENCIAILHTICLSDRTKWKAMRE----------EESTHGTISKLAQDG 298 (323)
Q Consensus 239 ~~~---g~i~~Lv~ll~~-~----~--~~~~~~~a~~~L~~L~~~~~~~~~~~~~----------~~~~i~~L~~ll~~~ 298 (323)
+.. ..+..++..... . + +....+.-+.++..+... ...++. -.++++.++++..+.
T Consensus 288 i~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~----l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~ 363 (1204)
T 3a6p_A 288 MVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQ----LCALLGADSDVETPSNFGKYLESFLAFTTHP 363 (1204)
T ss_dssp GGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHH----HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSS
T ss_pred HHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHH----HHHHHhccccccChhHHHHHHHHHHHHHhCc
Confidence 332 124455555421 0 1 133455666666665521 112211 125677777777777
Q ss_pred CHHHHHHHHHHHHHHh
Q 020640 299 TARAKRKATGILERLK 314 (323)
Q Consensus 299 ~~~~~~~A~~~L~~l~ 314 (323)
+..+-..+...-..+.
T Consensus 364 ~~~vs~~~l~fW~~ll 379 (1204)
T 3a6p_A 364 SQFLRSSTQMTWGALF 379 (1204)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cHHhHHHHHHHHHHHH
Confidence 7666666555444343
No 130
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=77.52 E-value=9.1 Score=30.03 Aligned_cols=72 Identities=10% Similarity=0.097 Sum_probs=56.8
Q ss_pred CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhc------CCHHHHHHHHHHHHHHhc
Q 020640 243 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD------GTARAKRKATGILERLKR 315 (323)
Q Consensus 243 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~------~~~~~~~~A~~~L~~l~~ 315 (323)
++..|.+-+++.+ +.++..|+.+|-.+..+-...+...+-...++..|++++.. .+..+++++..++..-..
T Consensus 51 A~ral~krl~~~n-~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 51 AVRLLAHKIQSPQ-EWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3567777788654 99999999999999988655566566677899999999862 368999999988887663
No 131
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=76.85 E-value=1.4 Score=37.06 Aligned_cols=102 Identities=14% Similarity=0.068 Sum_probs=59.3
Q ss_pred CCchhHHHHHH-----HHHHHhcc-ChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhh
Q 020640 42 ATLPDQTEAAK-----ELRLLTKR-MPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKL 115 (323)
Q Consensus 42 ~~~~~~~~a~~-----~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~ 115 (323)
.++.+|..|+. .+..+..+ ++..|..... .-..+.|..++. ++++.++..++.. +.
T Consensus 62 ~~~~VR~~AA~~l~~~~l~~L~~D~~~~VR~~aA~-~L~~~~L~~ll~------D~d~~VR~~aA~~---l~-------- 123 (244)
T 1lrv_A 62 PFWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAY-RLPREQLSALMF------DEDREVRITVADR---LP-------- 123 (244)
T ss_dssp SSHHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHT-TSCSGGGGGTTT------CSCHHHHHHHHHH---SC--------
T ss_pred CCHHHHHHHHHhCCHHHHHHHccCcCHHHHHHHHH-HCCHHHHHHHHc------CCCHHHHHHHHHh---CC--------
Confidence 34667777764 33444332 3344555555 334566677777 7889999888773 21
Q ss_pred hhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHH
Q 020640 116 VAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASA 185 (323)
Q Consensus 116 i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~a 185 (323)
. +.+..++++++..++..++.. +. .+.+..+++++++.++..++..
T Consensus 124 ----~---~~L~~L~~D~d~~VR~~aA~~---l~--------------~~~l~~l~~D~d~~VR~~aa~~ 169 (244)
T 1lrv_A 124 ----L---EQLEQMAADRDYLVRAYVVQR---IP--------------PGRLFRFMRDEDRQVRKLVAKR 169 (244)
T ss_dssp ----T---GGGGGGTTCSSHHHHHHHHHH---SC--------------GGGGGGTTTCSCHHHHHHHHHH
T ss_pred ----H---HHHHHHHcCCCHHHHHHHHHh---cC--------------HHHHHHHHcCCCHHHHHHHHHc
Confidence 0 123445677788888877762 11 1233345556677777776664
No 132
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=75.96 E-value=11 Score=28.74 Aligned_cols=72 Identities=11% Similarity=0.093 Sum_probs=56.3
Q ss_pred CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhh------cCCHHHHHHHHHHHHHHhc
Q 020640 243 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQ------DGTARAKRKATGILERLKR 315 (323)
Q Consensus 243 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~------~~~~~~~~~A~~~L~~l~~ 315 (323)
++..|.+-+++. ++.++..|+.+|-.+..+-...+...+-...++..|++++. ..++.++++...++..-..
T Consensus 49 a~ral~krl~~~-n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSP-QEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 356777777754 49999999999999988776555555566789999999985 3579999999888887663
No 133
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=75.67 E-value=7.7 Score=30.17 Aligned_cols=72 Identities=13% Similarity=0.160 Sum_probs=54.3
Q ss_pred hhHHHHHHHHhc-CCchhHHHHHHHHHHHhcc-ChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640 30 RDHFLSLLKKMS-ATLPDQTEAAKELRLLTKR-MPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 107 (323)
Q Consensus 30 ~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls 107 (323)
.+++..+.+.|+ .++.++..|+..|-.+.+. ...+...+.+ ...++.|+.++.. ..++.++..++..+...+
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas-~~Fl~el~~l~~~-----~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCS-RDFATEVRAVIKN-----KAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTS-HHHHHHHHHHHHT-----TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhh-HHHHHHHHHHHcc-----CCCHHHHHHHHHHHHHHH
Confidence 367777777775 6788888888888888865 3445666776 7788888888873 356899999999887665
No 134
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=74.56 E-value=11 Score=28.83 Aligned_cols=72 Identities=11% Similarity=0.067 Sum_probs=56.2
Q ss_pred CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhc------CCHHHHHHHHHHHHHHhc
Q 020640 243 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD------GTARAKRKATGILERLKR 315 (323)
Q Consensus 243 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~------~~~~~~~~A~~~L~~l~~ 315 (323)
++..|.+-+++. ++.++..|+.+|-.+..+-...+...+-...++..|++++.. .++.++++...++..-+.
T Consensus 39 a~rai~krl~~~-n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 39 APWLLAHKIQSP-QEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 466777777755 499999999999999887655565555667899999998863 378999999888877663
No 135
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=74.22 E-value=12 Score=28.53 Aligned_cols=78 Identities=14% Similarity=0.131 Sum_probs=58.4
Q ss_pred hhHHHHHHHHhc-CCchhHHHHHHHHHHHhcc-ChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640 30 RDHFLSLLKKMS-ATLPDQTEAAKELRLLTKR-MPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 107 (323)
Q Consensus 30 ~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls 107 (323)
.+++..+.+.++ .++.++..|+..|-.+.+. .+.+...+.+ ...+..|+.++.....+...++.++..++..+...+
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas-~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAK-FRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTS-HHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhh-HHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 467788888885 7789999999999888875 3456677777 788999999887311000247899999999998775
Q ss_pred c
Q 020640 108 I 108 (323)
Q Consensus 108 ~ 108 (323)
.
T Consensus 116 ~ 116 (148)
T 1mhq_A 116 V 116 (148)
T ss_dssp H
T ss_pred H
Confidence 3
No 136
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=71.57 E-value=94 Score=31.78 Aligned_cols=64 Identities=14% Similarity=0.073 Sum_probs=32.4
Q ss_pred ChHHHHHHhhh----cCHhHHHHHHHHHHHh----ccCCchhHHHHhhCchHHHHHHh----hcC--chHHHHHHHHHHH
Q 020640 163 ALKPLIDLLDE----GHQSAMKDVASAIFNL----CITHENKARAVRDGGVSVILKKI----MDG--VHVDELLAILAML 228 (323)
Q Consensus 163 ~i~~Lv~lL~~----~~~~~~~~al~aL~~L----~~~~~~~~~i~~~g~v~~Lv~ll----~~~--~~~~~a~~~L~~l 228 (323)
.+..+..++.. .++.++..++-++.+| |.....+. ...++.+.+.+ .++ .-+..++.+|.|+
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~----~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~ 467 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCP----DELLQPLHDLLSQSSDRAKEEEIVLALKALGNA 467 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCC----GGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCC----HHHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence 45566666654 3555666666665555 44332211 12344444444 333 2345567777777
Q ss_pred hc
Q 020640 229 ST 230 (323)
Q Consensus 229 ~~ 230 (323)
-.
T Consensus 468 g~ 469 (1056)
T 1lsh_A 468 GQ 469 (1056)
T ss_dssp TC
T ss_pred CC
Confidence 65
No 137
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=71.44 E-value=11 Score=31.12 Aligned_cols=72 Identities=6% Similarity=0.103 Sum_probs=55.3
Q ss_pred CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcC-CHHHHHHHHHHHHHHhc
Q 020640 243 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG-TARAKRKATGILERLKR 315 (323)
Q Consensus 243 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~A~~~L~~l~~ 315 (323)
++..|.+-|+.. ++.++..|+.+|-.+..+-.......+....++..|.+++... ++.++++...++.....
T Consensus 46 a~ral~krl~~~-n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 46 AVNSIKKKVNDK-NPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 356677777754 4899999999999988876554555555678888888888664 78999999998887764
No 138
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=70.76 E-value=14 Score=30.09 Aligned_cols=72 Identities=6% Similarity=0.062 Sum_probs=55.2
Q ss_pred CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcC-CHHHHHHHHHHHHHHhc
Q 020640 243 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG-TARAKRKATGILERLKR 315 (323)
Q Consensus 243 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~A~~~L~~l~~ 315 (323)
++..|.+-|+.. ++.++..|+.+|-.+..+-...+...+....++..|++++.+. +..+++++..++..-..
T Consensus 43 a~r~l~krl~~~-n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 43 AFAAIKKKMNSP-NPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 356666677755 4889999999999998887555555555667889999988765 78999999888877663
No 139
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=70.45 E-value=12 Score=29.40 Aligned_cols=78 Identities=15% Similarity=0.175 Sum_probs=56.8
Q ss_pred hhHHHHHHHHhc-CCchhHHHHHHHHHHHhccC-hhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640 30 RDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRM-PSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 107 (323)
Q Consensus 30 ~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls 107 (323)
.+++..|.+.++ .++.++..|+..|-.+.+.. ..+...+.+ ...++.|+.++.....+...+..++..++..+...+
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas-~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGK-FRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTS-HHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhh-HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 357777778885 67888999999888888753 455667777 788999999886311000346899999999998775
Q ss_pred c
Q 020640 108 I 108 (323)
Q Consensus 108 ~ 108 (323)
.
T Consensus 128 ~ 128 (171)
T 1juq_A 128 M 128 (171)
T ss_dssp H
T ss_pred H
Confidence 3
No 140
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=65.15 E-value=24 Score=31.98 Aligned_cols=102 Identities=17% Similarity=0.146 Sum_probs=66.0
Q ss_pred CCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHh--------cCCHHHHHHHHHHHHHhcCCCC-chhhhhc
Q 020640 90 GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALR--------SGTIETRSNAAAALFTLSALDS-NKEVIGK 160 (323)
Q Consensus 90 ~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~--------~~~~~~~~~a~~~L~~L~~~~~-~~~~i~~ 160 (323)
+..+..+..+++++.|+-.++.....+.........++..+. ..+..++..++..+.|++...- .+. +
T Consensus 273 ~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~ 349 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 349 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---C
T ss_pred CCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---h
Confidence 446788999999999998877744444433223445555542 1245678889999999974311 011 1
Q ss_pred cCChHHHHHHhh---------hcCHhHHHHHHHHHHHhccCCc
Q 020640 161 SGALKPLIDLLD---------EGHQSAMKDVASAIFNLCITHE 194 (323)
Q Consensus 161 ~g~i~~Lv~lL~---------~~~~~~~~~al~aL~~L~~~~~ 194 (323)
...+..+++++. ..+.+....++-||.+|....+
T Consensus 350 ~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~ 392 (425)
T 3pst_A 350 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 392 (425)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCH
Confidence 234456666666 2478899999999999975443
No 141
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=64.98 E-value=10 Score=31.83 Aligned_cols=101 Identities=18% Similarity=0.183 Sum_probs=64.8
Q ss_pred CCCHHHHHHHHHHHHHhccccc-hhhhhhccCCcHHHHHHHHh--------cCCHHHHHHHHHHHHHhcCCC-Cchhhhh
Q 020640 90 GINPNLQEDVITTLLNLSIHDN-NKKLVAETPMVIPLLMDALR--------SGTIETRSNAAAALFTLSALD-SNKEVIG 159 (323)
Q Consensus 90 ~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~g~i~~Lv~ll~--------~~~~~~~~~a~~~L~~L~~~~-~~~~~i~ 159 (323)
+.++..+.-+++++.|+..++. .+..+... .....++..+. ..+..++..++..+.|++... ..+.
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~-~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~--- 176 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESN-QVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS--- 176 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSH-HHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcc-hhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---
Confidence 3467899999999999988887 56655442 12333444431 125677888999999997421 1111
Q ss_pred ccCChHHHHHHhh---------hcCHhHHHHHHHHHHHhccCCc
Q 020640 160 KSGALKPLIDLLD---------EGHQSAMKDVASAIFNLCITHE 194 (323)
Q Consensus 160 ~~g~i~~Lv~lL~---------~~~~~~~~~al~aL~~L~~~~~ 194 (323)
+......+++.+. ..+.+....++-+|.+|...++
T Consensus 177 ~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 177 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 1224455666655 2377888889999999876443
No 142
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=64.98 E-value=13 Score=27.92 Aligned_cols=71 Identities=13% Similarity=0.163 Sum_probs=51.9
Q ss_pred hhHHHHHHHHhc-CCchhHHHHHHHHHHHhccC-hhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640 30 RDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRM-PSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 107 (323)
Q Consensus 30 ~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls 107 (323)
.+++..+.+.|. .++.++..|+..|-.+.+.. ......+.+ ...+..|+.+++ ..++.++...+..+...+
T Consensus 41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas-~~Fl~el~~l~~------~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCS-RDFASEVSNVLN------KGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSS-HHHHHHHHHHHH------HSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhh-HHHHHHHHHHhc------cCCHHHHHHHHHHHHHHH
Confidence 367777888885 67888888888887777543 233445666 667888888886 346899999999888765
No 143
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=62.37 E-value=76 Score=27.33 Aligned_cols=145 Identities=8% Similarity=0.127 Sum_probs=96.4
Q ss_pred hHHHHHHhhhc------CHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhh---cC-chHHHHHHHHHHHhc-CH
Q 020640 164 LKPLIDLLDEG------HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIM---DG-VHVDELLAILAMLST-NH 232 (323)
Q Consensus 164 i~~Lv~lL~~~------~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~---~~-~~~~~a~~~L~~l~~-~~ 232 (323)
.....++++++ +......++..|-.++-+-.-=..|++.. ...|-.++. .+ .+++.+.+++...-. +|
T Consensus 24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP 102 (315)
T 3qml_C 24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNP 102 (315)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCH
Confidence 44455666665 34466778888877776555555565532 233334332 22 578999999998877 47
Q ss_pred HHHHHHHhc--CCHHHHHHHHhcc------CChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcC--CHHH
Q 020640 233 RAVEEIGDL--GGVSCMLRIIRES------TCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG--TARA 302 (323)
Q Consensus 233 ~~~~~i~~~--g~i~~Lv~ll~~~------~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~ 302 (323)
...+.|.+. ..+..++.-|... ..+.++..-+++|..|...... + ...++..|.++...+ .+.+
T Consensus 103 ~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~-F-----~~~~m~~L~~ly~~~~~d~~~ 176 (315)
T 3qml_C 103 PVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED-L-----PIYSTVVLQNVYERNNKDKQL 176 (315)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT-C-------CCHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh-h-----hhccHHHHHHHHccCCCCHHH
Confidence 777777664 4566666555431 2356777788999999887621 2 135778888888777 9999
Q ss_pred HHHHHHHHHHHhc
Q 020640 303 KRKATGILERLKR 315 (323)
Q Consensus 303 ~~~A~~~L~~l~~ 315 (323)
|.++..++..+..
T Consensus 177 k~Kvl~li~d~f~ 189 (315)
T 3qml_C 177 QIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc
Confidence 9999999888764
No 144
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=62.11 E-value=77 Score=27.30 Aligned_cols=135 Identities=10% Similarity=0.036 Sum_probs=83.1
Q ss_pred chhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccc-hhhhhh-ccCC
Q 020640 44 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN-NKKLVA-ETPM 121 (323)
Q Consensus 44 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~-~~~g 121 (323)
...-..|+..|..++. +..+=..|.+ .. .+.|-+++... ..++.+++.++.++...-.++. ....+. ..+.
T Consensus 42 ~~~le~aLD~L~ElSH-Di~~G~KI~~-~e-f~lL~nL~~~~----~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~ 114 (315)
T 3qml_C 42 IARLEDSFDRIMEFAH-DYKHGYKIIT-HE-FALLANLSLNE----NLPLTLRELSTRVITSCLRNNPPVVEFINESFPN 114 (315)
T ss_dssp HHHHHHHHHHHGGGTT-SHHHHHHHHH-HH-HHHHHHHHHCT----TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhhh-hHHhhhHHHh-Cc-HHHHHHHHhhc----cCChhHHHHHHHHHHHHHccCHHHHHHHHHhChh
Confidence 3356779999999995 5555444443 22 33343333211 4467899999999987666554 222222 2334
Q ss_pred cHHHHHHHHhc-------CCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhc--CHhHHHHHHHHHHHh
Q 020640 122 VIPLLMDALRS-------GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEG--HQSAMKDVASAIFNL 189 (323)
Q Consensus 122 ~i~~Lv~ll~~-------~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~al~aL~~L 189 (323)
++..+..-|.. ....+++.-+++|..|...+. .+ ...++..|.+++..+ ++.++..++..+..+
T Consensus 115 fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~ 187 (315)
T 3qml_C 115 FKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-PIYSTVVLQNVYERNNKDKQLQIKVLELISKI 187 (315)
T ss_dssp HHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 44444443332 245778888999999987652 22 244678888888777 788888888777654
No 145
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=62.03 E-value=45 Score=27.90 Aligned_cols=105 Identities=11% Similarity=0.065 Sum_probs=63.2
Q ss_pred HHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh----
Q 020640 32 HFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL---- 106 (323)
Q Consensus 32 ~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l---- 106 (323)
.++.++.+-. .+.++|...+..|...+...++.. ...++.|..+|+ ++++.+...+..+..++
T Consensus 54 ~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~------~~~l~~L~~Ll~------d~d~~V~K~~I~~~~~iY~~~ 121 (257)
T 3gs3_A 54 FLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELL------PHVINVVSMLLR------DNSAQVIKRVIQACGSIYKNG 121 (257)
T ss_dssp HHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH------HHHHHHHHHHTT------CSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHc------CCCHHHHHHHHHHHHHHHHHH
Confidence 4555555332 447778888888888886554322 235677878887 67888888877766554
Q ss_pred ----ccccch---hhhhhc-cCCcHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 020640 107 ----SIHDNN---KKLVAE-TPMVIPLLMDALRSGTIETRSNAAAALFTL 148 (323)
Q Consensus 107 ----s~~~~~---~~~i~~-~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L 148 (323)
+.+... .....+ ...+-..++.+..+.+..++..+++.+..+
T Consensus 122 l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~v 171 (257)
T 3gs3_A 122 LQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGV 171 (257)
T ss_dssp HHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHH
Confidence 222210 111111 011233456666777888888888887775
No 146
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=60.41 E-value=36 Score=28.54 Aligned_cols=88 Identities=11% Similarity=0.129 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhh
Q 020640 94 NLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE 173 (323)
Q Consensus 94 ~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~ 173 (323)
+.+...+.-...+..+.+. .+.. .+++.++.+..+.+.++++-.+..+...+.... . ....+++.|..++++
T Consensus 30 ~~kl~~L~qa~el~~~~dp--~ll~--~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~---~-l~~~~l~~L~~Ll~d 101 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCA--ELAE--EFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV---E-LLPHVINVVSMLLRD 101 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTG--GGHH--HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG---G-GHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHccCH--hHHH--HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHcC
Confidence 3455555555555544332 1332 256666666556778888888888887763211 1 223367778888887
Q ss_pred cCHhHHHHHHHHHHHh
Q 020640 174 GHQSAMKDVASAIFNL 189 (323)
Q Consensus 174 ~~~~~~~~al~aL~~L 189 (323)
+++.+.+.++.+..++
T Consensus 102 ~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 102 NSAQVIKRVIQACGSI 117 (257)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 7888888777765443
No 147
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=60.15 E-value=31 Score=26.43 Aligned_cols=73 Identities=5% Similarity=0.058 Sum_probs=53.6
Q ss_pred CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHH-HHHHhhc---CCHHHHHHHHHHHHHHhc
Q 020640 243 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGT-ISKLAQD---GTARAKRKATGILERLKR 315 (323)
Q Consensus 243 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~-L~~ll~~---~~~~~~~~A~~~L~~l~~ 315 (323)
++..|.+-++...++.++..|+.+|-.+..+........+-...++.. |++++.. ....+++++..++..-..
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 356677777643448889999999999988765555555556778887 7888742 246899999888887664
No 148
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=59.96 E-value=40 Score=28.09 Aligned_cols=101 Identities=9% Similarity=0.012 Sum_probs=63.5
Q ss_pred hcCHhHHHHHHHHHHHhccCCc-hhHHHHhhCchHHHHHHhhc----------CchHHHHHHHHHHHhcCHH-HHHHHHh
Q 020640 173 EGHQSAMKDVASAIFNLCITHE-NKARAVRDGGVSVILKKIMD----------GVHVDELLAILAMLSTNHR-AVEEIGD 240 (323)
Q Consensus 173 ~~~~~~~~~al~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~----------~~~~~~a~~~L~~l~~~~~-~~~~i~~ 240 (323)
+..+..+..+++++.|+-.+.. .+..+........++..+.+ ..++..+...+.|++..-. .+. +
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~ 177 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 177 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---C
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---h
Confidence 4466788999999999988887 66655543334445554421 1466777888889987311 111 1
Q ss_pred cCCHHHHHHHHhc--------cCChhHHHHHHHHHHHhcccChH
Q 020640 241 LGGVSCMLRIIRE--------STCDRNKENCIAILHTICLSDRT 276 (323)
Q Consensus 241 ~g~i~~Lv~ll~~--------~~~~~~~~~a~~~L~~L~~~~~~ 276 (323)
......+++.+.. ..+.+....++-+|.+|...++.
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~~ 221 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPT 221 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcHH
Confidence 2234555555542 12367888888999999876654
No 149
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=59.52 E-value=15 Score=30.10 Aligned_cols=73 Identities=11% Similarity=0.114 Sum_probs=55.3
Q ss_pred hhHHHHHHHHhc-CCchhHHHHHHHHHHHhccCh-hhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640 30 RDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMP-SFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 107 (323)
Q Consensus 30 ~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls 107 (323)
.+++..|.+.|. .++.++..|+..|-.+.++-. .....+.+ ...++.|..++.. ..++.++..++.++...+
T Consensus 44 k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias-~~fl~~l~~l~~~-----~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 44 KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVAN-KQTMEELKDLLKR-----QVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSS-HHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhcc-HHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHH
Confidence 367888888885 678899999988888876433 24556667 7788888888864 456899999999998775
Q ss_pred c
Q 020640 108 I 108 (323)
Q Consensus 108 ~ 108 (323)
.
T Consensus 118 ~ 118 (226)
T 3zyq_A 118 H 118 (226)
T ss_dssp H
T ss_pred H
Confidence 3
No 150
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=58.67 E-value=1.7e+02 Score=30.06 Aligned_cols=215 Identities=11% Similarity=0.016 Sum_probs=120.6
Q ss_pred HHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHh-cCCHHHHHHHHHHHHHhcCC--
Q 020640 75 IPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSAL-- 151 (323)
Q Consensus 75 i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~-~~~~~~~~~a~~~L~~L~~~-- 151 (323)
++.++..+. +++.+.+..|-..|..+-.+++ ....+..+|. +.++.++--|+.+|.+....
T Consensus 30 Le~lv~~ly------~p~~~~r~qA~~~L~q~q~sp~----------aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W 93 (1073)
T 3gjx_A 30 LDNVVNCLY------HGEGAQQRMAQEVLTHLKEHPD----------AWTRVDTILEFSQNMNTKYYGLQILENVIKTRW 93 (1073)
T ss_dssp HHHHHHTTT------CSSHHHHHHHHHHHHTSSCCSC----------HHHHHTCC---CCSHHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHh------CCCHHHHHHHHHHHHHHHcCch----------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhh
Confidence 444555555 4456677778888877754433 2333333443 45789999999999987532
Q ss_pred ---CCchhhhhccCChHHHHHHhhh-----cCHhHHHHHHHHHHHhccCC--chhHHHHhhCchHHHHHHhhcC-chHHH
Q 020640 152 ---DSNKEVIGKSGALKPLIDLLDE-----GHQSAMKDVASAIFNLCITH--ENKARAVRDGGVSVILKKIMDG-VHVDE 220 (323)
Q Consensus 152 ---~~~~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~al~aL~~L~~~~--~~~~~i~~~g~v~~Lv~ll~~~-~~~~~ 220 (323)
++....-.+...+..+...... .++.++...+.++..++... +.-. +.++.++..+.++ ...+.
T Consensus 94 ~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp-----~fi~dLv~~~~~~~~~~~~ 168 (1073)
T 3gjx_A 94 KILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWP-----TFISDIVGASRTSESLCQN 168 (1073)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCT-----THHHHHHHHHHHCHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhcc-----HHHHHHHHHhCCCHHHHHH
Confidence 1112222222234444433222 23556666677776665422 1111 3455666666544 44566
Q ss_pred HHHHHHHHhcC--H------------HHHHHHHhc--CCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhh
Q 020640 221 LLAILAMLSTN--H------------RAVEEIGDL--GGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREE 284 (323)
Q Consensus 221 a~~~L~~l~~~--~------------~~~~~i~~~--g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~ 284 (323)
.+.+|..++.. . ..++.+.+. .+++.+...+....++.+...+..+|..+..--+ ...++ +
T Consensus 169 ~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~--i~~i~-~ 245 (1073)
T 3gjx_A 169 NMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP--LGYIF-E 245 (1073)
T ss_dssp HHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHH-S
T ss_pred HHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC--HHHhc-c
Confidence 77777776642 0 123334433 1333344455444447777778888888766543 23444 5
Q ss_pred cccHHHHH-HHhhcCCHHHHHHHHHHHHHHhc
Q 020640 285 ESTHGTIS-KLAQDGTARAKRKATGILERLKR 315 (323)
Q Consensus 285 ~~~i~~L~-~ll~~~~~~~~~~A~~~L~~l~~ 315 (323)
.+.++.|+ .++ ++++.+..|+.+|..+..
T Consensus 246 ~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~ 275 (1073)
T 3gjx_A 246 TKLISTLIYKFL--NVPMFRNVSLKCLTEIAG 275 (1073)
T ss_dssp SSHHHHHHHHTS--SSHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhc--CChHHHHHHHHHHHHHHh
Confidence 67888774 554 478899999998888764
No 151
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=57.96 E-value=5.3 Score=25.35 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=20.6
Q ss_pred hHHHHHHcCCCCCCCCCCCCccccchh
Q 020640 2 ISQWCRSQGIELPNSVQYINEEGITEA 28 (323)
Q Consensus 2 ~~~w~~~~~~~~~~~~~~~~~~~~~~~ 28 (323)
|++|+..++ ++|-+.++...+...|.
T Consensus 31 I~~~l~~~~-~cP~t~~~L~~~~Lip~ 56 (61)
T 2bay_A 31 LEQYVKDTG-NDPITNEPLSIEEIVEI 56 (61)
T ss_dssp HHHHHHHHS-BCTTTCCBCCGGGCEEC
T ss_pred HHHHHHhCC-CCcCCcCCCChhhcEEC
Confidence 899998776 49999998888766654
No 152
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=56.96 E-value=31 Score=30.56 Aligned_cols=101 Identities=17% Similarity=0.151 Sum_probs=63.8
Q ss_pred CCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHh--------cCCHHHHHHHHHHHHHhcCCCCc-hhhhhc
Q 020640 90 GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALR--------SGTIETRSNAAAALFTLSALDSN-KEVIGK 160 (323)
Q Consensus 90 ~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~--------~~~~~~~~~a~~~L~~L~~~~~~-~~~i~~ 160 (323)
+..+..+..+++++.|+-.+......+.........++..+. ..+..++..++..+.|++...-. +. +
T Consensus 210 ~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~ 286 (362)
T 3l3f_X 210 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 286 (362)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---C
T ss_pred CCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---h
Confidence 446788999999999998877744444432212233444331 12456788899999999743110 11 1
Q ss_pred cCChHHHHHHhh---------hcCHhHHHHHHHHHHHhccCC
Q 020640 161 SGALKPLIDLLD---------EGHQSAMKDVASAIFNLCITH 193 (323)
Q Consensus 161 ~g~i~~Lv~lL~---------~~~~~~~~~al~aL~~L~~~~ 193 (323)
...+..+++++. ..+.+....++-||.+|...+
T Consensus 287 ~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 287 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 234456677666 247888999999999987533
No 153
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=54.86 E-value=21 Score=29.13 Aligned_cols=71 Identities=13% Similarity=0.124 Sum_probs=54.7
Q ss_pred hHHHHHHHHhc-CCchhHHHHHHHHHHHhccC-hhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640 31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRM-PSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 107 (323)
Q Consensus 31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls 107 (323)
+++..|.+.|+ .++.++..|+..|-.+.+.- +.....+.+ ...++.|+.++.. ..+.+++..++..+...+
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~-~~fl~~l~~l~~~-----~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFT-KENCEMFSSFLES-----TPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSS-HHHHHHHHHHHHH-----CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHh-HHHHHHHHHHhcC-----CCcHHHHHHHHHHHHHHH
Confidence 67778888885 67889999999888888754 335566777 6788888888864 346889999999887765
No 154
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=51.59 E-value=43 Score=25.60 Aligned_cols=75 Identities=13% Similarity=0.206 Sum_probs=52.1
Q ss_pred hhHHHHHHHHhc--CCchhHHHHHHHHHHHhccC-hhhHHHHhhhcCCHHH-HHHhhcccccCCCCCHHHHHHHHHHHHH
Q 020640 30 RDHFLSLLKKMS--ATLPDQTEAAKELRLLTKRM-PSFRALFGESHDAIPQ-LLSPLSESKCENGINPNLQEDVITTLLN 105 (323)
Q Consensus 30 ~~~i~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~~g~i~~-Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ 105 (323)
.+++..+.+.|+ .++.++..|+..|-.+.+.. +.....+.+ ...++. |+.++.... ..+..++..++..+..
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~-~~fl~e~Lvk~~~~k~---~~~~~Vk~kil~li~~ 127 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVAS-QDFVESVLVRTILPKN---NPPTIVHDKVLNLIQS 127 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTS-HHHHHHHTHHHHSTTT---CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhh-HHHHHHHHHHHhccCC---CCcHHHHHHHHHHHHH
Confidence 467777778884 45778888888888877653 445566776 778887 788774211 2346889999998877
Q ss_pred hcc
Q 020640 106 LSI 108 (323)
Q Consensus 106 ls~ 108 (323)
.+.
T Consensus 128 W~~ 130 (157)
T 1elk_A 128 WAD 130 (157)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 155
>4dvg_B Diaphanous protein; cytoskeleton, armadillo repeat, GTPase-binding domain, nucle binding, signaling protein, lipoprotein; HET: GSP; 2.60A {Entamoeba histolytica}
Probab=49.92 E-value=96 Score=24.69 Aligned_cols=153 Identities=16% Similarity=0.205 Sum_probs=91.4
Q ss_pred HHHHHHhhhc-CHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC----------chHHHHHHHHHHHhcCHH
Q 020640 165 KPLIDLLDEG-HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG----------VHVDELLAILAMLSTNHR 233 (323)
Q Consensus 165 ~~Lv~lL~~~-~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~----------~~~~~a~~~L~~l~~~~~ 233 (323)
..|.++|+.. +........-..+ +.+-.-...++..|++.-|+.+.+.. +-...||.+|+..-..++
T Consensus 69 kyladllktrddmdllnemvvvfr--sssvsfiktfvsvgglanlmaiykkkieaensntaideerkccevlryvfaeed 146 (353)
T 4dvg_B 69 KYLADLLKTRDDMDLLNEMVVVFR--SSSVSFIKTFVSVGGLANLMAIYKKKIEAENSNTAIDEERKCCEVLRYVFAEED 146 (353)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHH--HSCHHHHHHHHHTSTHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHhccchHHHhhhheEEEe--ccchhHHHHHhhhccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHhccc
Confidence 4566677654 3333333222222 11223344567789999888877632 235779999999888888
Q ss_pred HHHHHHhc-CCHHHHHHHHhccCChhHHHHHHHHHHHhccc-----ChH--------------hHHHHHh----hcccHH
Q 020640 234 AVEEIGDL-GGVSCMLRIIRESTCDRNKENCIAILHTICLS-----DRT--------------KWKAMRE----EESTHG 289 (323)
Q Consensus 234 ~~~~i~~~-g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~-----~~~--------------~~~~~~~----~~~~i~ 289 (323)
....+++- |++..|++-+.+. ...-.+-+.+|..++.. .|. ....++. -..++.
T Consensus 147 atvalieidggvelllkgmnsk--ritpdnqldilleitltssmvehpsqeglylggdvcvmnafsnlvsegvdmkkfls 224 (353)
T 4dvg_B 147 ATVALIEIDGGVELLLKGMNSK--RITPDNQLDILLEITLTSSMVEHPSQEGLYLGGDVCVMNAFSNLVSEGVDMKKFLS 224 (353)
T ss_dssp HHHHHHTSTTHHHHHHHHHTCT--TSCHHHHHHHHHHHHHHHHCSBCTTSTTCBCCHHHHHHHHHHHHHHTTSCSSTTHH
T ss_pred ceEEEEEecccHHHHhcccccC--cCCCccccceeeeEeehhhhhcCccccceeecCceeeehhhHHHHhccccHHHHHH
Confidence 88888875 7899998888742 12223333444333211 110 1111111 123444
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHhcchhhcc
Q 020640 290 TISKLAQDGTARAKRKATGILERLKRTVNLTH 321 (323)
Q Consensus 290 ~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~ 321 (323)
...-+.++.++..+.....++.||-.-+.+.|
T Consensus 225 ffslfsksksekfkhaslvlinnlidqpeleh 256 (353)
T 4dvg_B 225 FFSLFSKSKSEKFKHASLVLINNLIDQPELEH 256 (353)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHCCSSHHH
T ss_pred HHHHHhhhhhhhcccceeehhhccccchhhHh
Confidence 44455677789999999999999998887776
No 156
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=49.39 E-value=37 Score=25.57 Aligned_cols=73 Identities=7% Similarity=0.161 Sum_probs=50.4
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHH-HHHhhcccHHHHHHHhhc-----C---CHHHHHHHHHHHHHHh
Q 020640 244 VSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWK-AMREEESTHGTISKLAQD-----G---TARAKRKATGILERLK 314 (323)
Q Consensus 244 i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~-~~~~~~~~i~~L~~ll~~-----~---~~~~~~~A~~~L~~l~ 314 (323)
++.|.+-|++.+ +.++.+|+.+|-.|+.+..+.+. .+......|..|.++--. | ...++.+|..++..|.
T Consensus 51 m~~L~kRL~~k~-~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 51 SEFILKRLDNKS-PIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHTSSS-HHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCC-cceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 566777777554 88999999999999987755433 444444445555544211 1 3789999999999987
Q ss_pred cch
Q 020640 315 RTV 317 (323)
Q Consensus 315 ~~~ 317 (323)
...
T Consensus 130 d~~ 132 (140)
T 1vdy_A 130 SEE 132 (140)
T ss_dssp CCS
T ss_pred CcC
Confidence 643
No 157
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=47.62 E-value=69 Score=28.58 Aligned_cols=104 Identities=14% Similarity=0.006 Sum_probs=66.3
Q ss_pred hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc--
Q 020640 31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS-- 107 (323)
Q Consensus 31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls-- 107 (323)
+.++.++++-. .+.++|...+..|...+....++. . -+++.|..+|+ ++++.+...+..+..++=
T Consensus 63 ~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~---~---~~l~~L~~LL~------d~d~~V~K~~I~~~tslYpl 130 (386)
T 3o2t_A 63 NFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL---L---KLIANLNMLLR------DENVNVVKKAILTMTQLYKV 130 (386)
T ss_dssp GGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH---H---HHHHHHHHHHT------CSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHc------CCCHHHHHHHHHHHHHHHHH
Confidence 46666666654 457788889999988887554432 2 35677788887 678888887777665541
Q ss_pred ------cccc------hhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 020640 108 ------IHDN------NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTL 148 (323)
Q Consensus 108 ------~~~~------~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L 148 (323)
.++. .....+. .+-..++.+..+.+..++..+++.+..+
T Consensus 131 ~f~~i~~~~~~~~~~e~~W~~m~--~lK~~Il~~~ds~n~GVrl~aiKFle~V 181 (386)
T 3o2t_A 131 ALQWMVKSRVISELQEACWDMVS--AMAGDIILLLDSDNDGIRTHAIKFVEGL 181 (386)
T ss_dssp HHHHHHHC-CCCHHHHHHHHHHH--HHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcchhHHHHHHHHH--HHHHHHHHHhccCCcchHHHHHHHHHHH
Confidence 1111 1111111 1234566667788899999999888875
No 158
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=47.06 E-value=46 Score=25.03 Aligned_cols=75 Identities=13% Similarity=0.162 Sum_probs=44.8
Q ss_pred hhHHHHHHHHhc-CCchhHHHHHHHHHHHhccC-hhhHHHHhhhcCCHHHHHHhhccccc------CCCCCHHHHHHHHH
Q 020640 30 RDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRM-PSFRALFGESHDAIPQLLSPLSESKC------ENGINPNLQEDVIT 101 (323)
Q Consensus 30 ~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~------~~~~~~~~~~~a~~ 101 (323)
...+..|.+.|. .++.++.+|+..|..++.+. +.++..+.++.. .++-|.++.. +++....++..|-.
T Consensus 48 ~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~----~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkE 123 (140)
T 1vdy_A 48 KEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSV----AVRNLFHYKGHPDPLKGDALNKAVRETAHE 123 (140)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTH----HHHTTTTCCCCCCTTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHH----HHHHHHhcCCCCCcccccchhHHHHHHHHH
Confidence 345666666774 56789999999999999543 344555555222 3444443221 11223567777777
Q ss_pred HHHHhcc
Q 020640 102 TLLNLSI 108 (323)
Q Consensus 102 ~L~~ls~ 108 (323)
++..|..
T Consensus 124 l~~ll~d 130 (140)
T 1vdy_A 124 TISAIFS 130 (140)
T ss_dssp HHHHHTC
T ss_pred HHHHHhC
Confidence 7766643
No 159
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=46.91 E-value=13 Score=24.31 Aligned_cols=37 Identities=22% Similarity=0.307 Sum_probs=25.9
Q ss_pred hHHHHHHcCCCCCCCCCCCCccccchhhhhHHHHHHHHh
Q 020640 2 ISQWCRSQGIELPNSVQYINEEGITEADRDHFLSLLKKM 40 (323)
Q Consensus 2 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lv~~l 40 (323)
|++|+.++..++|.-.++...+...++ ..+..+++.+
T Consensus 35 i~~~~~~~~~~CP~C~~~~~~~~l~~n--~~l~~~i~~~ 71 (78)
T 1t1h_A 35 IQKWLDAGHKTCPKSQETLLHAGLTPN--YVLKSLIALW 71 (78)
T ss_dssp HHHHHTTTCCBCTTTCCBCSSCCCEEC--TTTHHHHHHH
T ss_pred HHHHHHHCcCCCCCCcCCCChhhCccC--HHHHHHHHHH
Confidence 689998778889988888776555554 3455555554
No 160
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=43.39 E-value=58 Score=24.70 Aligned_cols=71 Identities=15% Similarity=0.147 Sum_probs=53.5
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC--chhhhhccCChHHHHHHhhh------cCHhHHHHHHHHHHHhccC
Q 020640 122 VIPLLMDALRSGTIETRSNAAAALFTLSALDS--NKEVIGKSGALKPLIDLLDE------GHQSAMKDVASAIFNLCIT 192 (323)
Q Consensus 122 ~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~--~~~~i~~~g~i~~Lv~lL~~------~~~~~~~~al~aL~~L~~~ 192 (323)
++..|..-+.+.++.++..|+.+|-.+..+-. -...+.....+..|++++.. .+..++..++..+..-+..
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 45667777788899999999998888865433 34566667788899999863 4778999999988776543
No 161
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=41.18 E-value=1.5e+02 Score=27.24 Aligned_cols=156 Identities=15% Similarity=0.113 Sum_probs=91.5
Q ss_pred hHHHHHHHHhcCCc------hhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHH
Q 020640 31 DHFLSLLKKMSATL------PDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLL 104 (323)
Q Consensus 31 ~~i~~Lv~~l~~~~------~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~ 104 (323)
..+..|...+..++ ..-.++...|...+...+..-+ ..++.+-++|........-|++....-+..+.
T Consensus 31 ~ll~~L~t~~e~~~~p~~in~Lie~~~LnL~~~t~~~~~~~~------~ll~~Ik~iL~~~~~~~~lD~~~Li~Ll~~il 104 (500)
T 3vld_A 31 NLLTQLENELNEDNLPEDINTLLRKCSLNLVTVVSLPDMDVK------PLLATIKRFLTSNVSYDSLNYDYLLDVVDKLV 104 (500)
T ss_dssp HHHHHHHHHHHTSSCCTTHHHHHHHHHHHHHHSCSCCSCCCH------HHHHHHHHHHHCSSCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccCCCCchhHHHHHHHhhcchhcccCCcccHH------HHHHHHHHHHcCCccccccCHHHHHHHHHHHH
Confidence 45555555553222 2345567777777654331211 13344556663211000235666555555554
Q ss_pred HhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCH--h-HHHH
Q 020640 105 NLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQ--S-AMKD 181 (323)
Q Consensus 105 ~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~--~-~~~~ 181 (323)
..+..+ .+.+.-. ++.++.-|.++++.+...|++++. ....+..+...+++..|++++-..+. . +...
T Consensus 105 ~~~~Fd----~VLevys-ve~i~~aL~S~~~~l~~~~ckVI~----~s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~ 175 (500)
T 3vld_A 105 PMADFD----DVLEVYS-AEDLVKALRSEIDPLKVAACRVIE----NSQPKGLFATSNIIDILLDILFDEKVENDKLITA 175 (500)
T ss_dssp HHSCHH----HHHHHSC-HHHHHHHHTSSCHHHHHHHHHHHH----TCSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHH
T ss_pred hcCCHH----HHHHhCC-HHHHHHHHhcCChHHHHHHHHHhc----ccCchhHhccChHHHHHHHHHcCCCCCcHHHHHH
Confidence 443322 2333232 678899999999999999999988 45667788889999999998776432 2 5666
Q ss_pred HHHHHHHhccCCchhHHHHh
Q 020640 182 VASAIFNLCITHENKARAVR 201 (323)
Q Consensus 182 al~aL~~L~~~~~~~~~i~~ 201 (323)
.=.++..|+.+.=.+.++.+
T Consensus 176 IE~~~~~LssdeLirrril~ 195 (500)
T 3vld_A 176 IEKALERLSTDELIRRRLFD 195 (500)
T ss_dssp HHHHHHHHTTSHHHHHHHHT
T ss_pred HHHHHHHcCchHHHHHHHHH
Confidence 66667777654435555554
No 162
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=37.57 E-value=36 Score=22.86 Aligned_cols=36 Identities=11% Similarity=0.062 Sum_probs=26.1
Q ss_pred hHHHHHHcCCCCCCCCCCCCccccchhhhhHHHHHHHHh
Q 020640 2 ISQWCRSQGIELPNSVQYINEEGITEADRDHFLSLLKKM 40 (323)
Q Consensus 2 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lv~~l 40 (323)
|++|+.+ ..++|-..++.+.+...++ ..+..+++.+
T Consensus 41 I~~~l~~-~~~cP~~~~~l~~~~l~pn--~~L~~~i~~~ 76 (85)
T 2kr4_A 41 ILRHLLN-SPTDPFNRQMLTESMLEPV--PELKEQIQAW 76 (85)
T ss_dssp HHHHHHH-CSBCTTTCCBCCGGGCEEC--HHHHHHHHHH
T ss_pred HHHHHhc-CCCCCCCcCCCChHhcchH--HHHHHHHHHH
Confidence 7899885 5689999998887766665 4456565555
No 163
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=36.10 E-value=30 Score=24.19 Aligned_cols=36 Identities=11% Similarity=0.044 Sum_probs=27.0
Q ss_pred hHHHHHHcCCCCCCCCCCCCccccchhhhhHHHHHHHHh
Q 020640 2 ISQWCRSQGIELPNSVQYINEEGITEADRDHFLSLLKKM 40 (323)
Q Consensus 2 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lv~~l 40 (323)
|++|+. +..+||-..++.+.+...|+ ..+..+++.+
T Consensus 56 I~~~l~-~~~~cP~~~~~l~~~~L~pn--~~Lk~~I~~~ 91 (100)
T 2kre_A 56 ILRHLL-NSPTDPFNRQTLTESMLEPV--PELKEQIQAW 91 (100)
T ss_dssp HHHHTT-SCSBCSSSCCBCCTTSSEEC--HHHHHHHHHH
T ss_pred HHHHHH-cCCCCCCCCCCCChhhceEC--HHHHHHHHHH
Confidence 789987 46789999998888766766 4566666665
No 164
>1rij_A E6APN1 peptide; Trp-CAGE, E6-binding domain, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.32.1.1
Probab=35.41 E-value=12 Score=18.46 Aligned_cols=15 Identities=20% Similarity=0.490 Sum_probs=10.3
Q ss_pred hHHHHHHcCCCCCCC
Q 020640 2 ISQWCRSQGIELPNS 16 (323)
Q Consensus 2 ~~~w~~~~~~~~~~~ 16 (323)
+-||+..+|++...|
T Consensus 6 lgqwlkdggpssgrp 20 (26)
T 1rij_A 6 LGQWLKDGGPSSGRP 20 (26)
T ss_dssp HHHHHHTTGGGSSSC
T ss_pred HHHHHHcCCCCCCCC
Confidence 468998888765433
No 165
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=33.98 E-value=2.5e+02 Score=24.91 Aligned_cols=128 Identities=14% Similarity=0.080 Sum_probs=82.3
Q ss_pred chhHHHHHHHHHHHhc-cChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCc
Q 020640 44 LPDQTEAAKELRLLTK-RMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMV 122 (323)
Q Consensus 44 ~~~~~~a~~~L~~l~~-~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~ 122 (323)
.+.+...+.-++.+.. .++. +.+ ++++.++.+-. +.+.+++...+..|...+..+ ..+.. -+
T Consensus 39 ~~~Kl~~L~q~~EL~l~~dps----Ll~--~fl~~il~f~~------d~~~~vRk~~a~FieEa~~~~---~el~~--~~ 101 (386)
T 3o2t_A 39 NDSKITVLKQVQELIINKDPT----LLD--NFLDEIIAFQA------DKSIEVRKFVIGFIEEACKRD---IELLL--KL 101 (386)
T ss_dssp STHHHHHHHHHHHHHHTTCGG----GGG--GGHHHHHGGGG------CSCHHHHHHHHHHHHHHHHHC---GGGHH--HH
T ss_pred hHHHHHHHHHHHHHHhccCHH----HHH--HHHHHHHHhcc------CCcHHHHHHHHHHHHHHHHHH---HHHHH--HH
Confidence 4678888999988754 3343 333 67888888777 678999999999998765421 22222 25
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh--------cCCCCc------hhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHH
Q 020640 123 IPLLMDALRSGTIETRSNAAAALFTL--------SALDSN------KEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFN 188 (323)
Q Consensus 123 i~~Lv~ll~~~~~~~~~~a~~~L~~L--------~~~~~~------~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~ 188 (323)
++.|..+++++++.+.+.++.+..++ +.++.. ....+ ...-..++.++.+++..++..|+..+..
T Consensus 102 l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m-~~lK~~Il~~~ds~n~GVrl~aiKFle~ 180 (386)
T 3o2t_A 102 IANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMV-SAMAGDIILLLDSDNDGIRTHAIKFVEG 180 (386)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHH-HHHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHH-HHHHHHHHHHhccCCcchHHHHHHHHHH
Confidence 77788888888888888776665553 222211 11111 1123345555666788889988888766
Q ss_pred h
Q 020640 189 L 189 (323)
Q Consensus 189 L 189 (323)
+
T Consensus 181 V 181 (386)
T 3o2t_A 181 L 181 (386)
T ss_dssp H
T ss_pred H
Confidence 5
No 166
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=32.03 E-value=35 Score=23.74 Aligned_cols=36 Identities=11% Similarity=0.088 Sum_probs=26.3
Q ss_pred hHHHHHHcCCCCCCCCCCCCccccchhhhhHHHHHHHHh
Q 020640 2 ISQWCRSQGIELPNSVQYINEEGITEADRDHFLSLLKKM 40 (323)
Q Consensus 2 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lv~~l 40 (323)
|++|+.+ ..++|-..++...+...|+ ..+..+++.+
T Consensus 50 I~~~l~~-~~~cP~~~~~l~~~~L~pn--~~Lk~~I~~~ 85 (98)
T 1wgm_A 50 IARHLLS-DQTDPFNRSPLTMDQIRPN--TELKEKIQRW 85 (98)
T ss_dssp HHHHTTT-SCBCTTTCSBCCTTTSEEC--HHHHHHHHHH
T ss_pred HHHHHHh-CCCCCCCCCCCChhhceEc--HHHHHHHHHH
Confidence 7899876 5679999988887766665 4566666655
No 167
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=30.03 E-value=78 Score=24.05 Aligned_cols=73 Identities=5% Similarity=0.107 Sum_probs=49.2
Q ss_pred CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHH-HHHHhhc---CCHHHHHHHHHHHHHHhc
Q 020640 243 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGT-ISKLAQD---GTARAKRKATGILERLKR 315 (323)
Q Consensus 243 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~-L~~ll~~---~~~~~~~~A~~~L~~l~~ 315 (323)
++..|.+-+..+.++.++..|+.+|-.+..+-...+...+-...++.- |++++.. ....++++...++...+.
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~ 130 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQ 130 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHH
Confidence 456777777643346777888888888877665544444444566653 6777653 246899999998888774
No 168
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=26.11 E-value=1.4e+02 Score=26.34 Aligned_cols=127 Identities=6% Similarity=-0.029 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhccCCchhHHHHhhCchHHHHHH-hhcC--chHHHHHHHHHHHhcCHH-HHHHHHhcCCHHHHHHHHhc-
Q 020640 179 MKDVASAIFNLCITHENKARAVRDGGVSVILKK-IMDG--VHVDELLAILAMLSTNHR-AVEEIGDLGGVSCMLRIIRE- 253 (323)
Q Consensus 179 ~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~l-l~~~--~~~~~a~~~L~~l~~~~~-~~~~i~~~g~i~~Lv~ll~~- 253 (323)
+..++..|+-+..+.... +.+..++.. +.+. ..+.-++++++|+=.++. .+..+........+++.+..
T Consensus 180 ~FP~LDLLRl~v~~~~~~------~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~ 253 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYS------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTE 253 (362)
T ss_dssp CHHHHHHHHHHGGGCSCG------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSC
T ss_pred cchHHHHHHHHhcCCChH------HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHH
Confidence 666888887776655432 222223322 2222 467889999999999887 45444332223344444421
Q ss_pred ------cCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhh---------cCCHHHHHHHHHHHHHHhc
Q 020640 254 ------STCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQ---------DGTARAKRKATGILERLKR 315 (323)
Q Consensus 254 ------~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~---------~~~~~~~~~A~~~L~~l~~ 315 (323)
+.+..++.+++..+.|++........ +......+.+.+. ..++++..++..+|-+|.-
T Consensus 254 ~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~----~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 254 FSQASAKQSQNLAIAVSTLIFNYSALVTKGNS----DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS----CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred hhhcccCCCchHHHHHHHHHHHHHHHHhcccc----hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 11245788999999999886422100 1234456666665 3588999999988888874
No 169
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=25.82 E-value=6e+02 Score=26.70 Aligned_cols=256 Identities=13% Similarity=0.062 Sum_probs=129.5
Q ss_pred HHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcccc
Q 020640 32 HFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD 110 (323)
Q Consensus 32 ~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~ 110 (323)
....+++.+. .+...|.+.+..|=.+..++. + ..++..|.++|.. ++.+....+.+|.+|..++
T Consensus 158 l~~ki~~vl~vap~~lQ~diI~sLPeIl~ds~-H-------~~v~~~L~~lL~~-------~~~L~~~iLdaLs~L~Ls~ 222 (1323)
T 3s4w_B 158 LTAQMMQLISVAPVNLQHDFITSLPEILGDSQ-H-------ANVGKELGELLVQ-------NTSLTVPILDVFSSLRLDP 222 (1323)
T ss_dssp HHHHHHHHHHHSCTTTHHHHHHTHHHHSCGGG-H-------HHHHHHHHHHHHH-------CSTTHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHhHHHhcchh-h-------HHHHHHHHHHHhc-------CcchHHHHHHHHHcCCCCH
Confidence 4444555553 334555556655555554322 1 2244557777763 4568888889999998777
Q ss_pred chhhhh----hc-----cCCcHHHHHHHHh-cCCHHHHHHHHHHHHHhcCCC---------Cchhhhh----------cc
Q 020640 111 NNKKLV----AE-----TPMVIPLLMDALR-SGTIETRSNAAAALFTLSALD---------SNKEVIG----------KS 161 (323)
Q Consensus 111 ~~~~~i----~~-----~~g~i~~Lv~ll~-~~~~~~~~~a~~~L~~L~~~~---------~~~~~i~----------~~ 161 (323)
+....+ ++ ....+|.+++++- +.+......++..|+.--... .....+. +.
T Consensus 223 ~~l~~vr~~vl~~L~s~~~e~LP~lIkFLL~s~t~~~~~evI~~LR~~L~~~~~~~p~~~~~s~~~~k~~~~~~~~~~~~ 302 (1323)
T 3s4w_B 223 NFLSKIRQLVMGKLSSVRLEDFPVIVKFLLHSVTDTTSLEVIAELRENLNVQQFILPSRIQASQSKLKSKGLASSSGNQE 302 (1323)
T ss_dssp HHHHHHHHHHHHSTTSSCTTHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHCC----------------------------
T ss_pred HHHHHHHHHHHHHhccCChhhhHHHHHHHHHhCCHhhHHHHHHHHHHHcCccccccchhhhhhhhhhhccccccCCcccc
Confidence 543322 21 1234788888773 333333333444444311110 0001110 11
Q ss_pred C----ChHHHHHHhhhc---CHhHHHHHHHHHHHhccCCchhHHHHhhCchHH--HHHHhhcC-chHHHHHHHHHHHhcC
Q 020640 162 G----ALKPLIDLLDEG---HQSAMKDVASAIFNLCITHENKARAVRDGGVSV--ILKKIMDG-VHVDELLAILAMLSTN 231 (323)
Q Consensus 162 g----~i~~Lv~lL~~~---~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~--Lv~ll~~~-~~~~~a~~~L~~l~~~ 231 (323)
| ....+++.++++ ++.+....++++.++....+. ..+.. |+-+...+ ..+..+-.++.+....
T Consensus 303 ~s~~~~~~lild~lks~l~~~k~i~eAwlK~I~~~~~~~~h-------k~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~ 375 (1323)
T 3s4w_B 303 NSDKDCIVLVFDVIKSAIRYEKTISEAWFKAIERIESAAEH-------KSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQS 375 (1323)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHGGGSTTC-------CTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTT
T ss_pred ccccchHHHHHHHHHHHHhcChHHHHHHHHHHhCCCccccc-------chhHHHHHHHHHcCCchhHHHHHHHHHHHHHc
Confidence 1 223366666664 778888888888887664332 12222 22222222 2345555555554443
Q ss_pred H----HHH-------HHHHhcCCHHHHHHHHhc---cCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhc
Q 020640 232 H----RAV-------EEIGDLGGVSCMLRIIRE---STCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD 297 (323)
Q Consensus 232 ~----~~~-------~~i~~~g~i~~Lv~ll~~---~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~ 297 (323)
. ..- ..+. ....+.++.+.+. +.++.+++-+......+-....+.++ -.+++.|+..+-+
T Consensus 376 G~it~~ll~~~f~~h~~vL-~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~~~q-----qeVl~~Lv~hi~s 449 (1323)
T 3s4w_B 376 DCIQEQLLDSAFSTHYLVL-KDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDTYCQ-----QEVVGALVTHVCS 449 (1323)
T ss_dssp TCSCHHHHHHHHHHHHHHH-TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCHHHH-----HHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccchhH-----HHHHHHHHhhhcC
Confidence 1 111 1122 2345555544432 44467777777766666554433212 1355677776666
Q ss_pred CCHHHHHHHHHHHHHHhc
Q 020640 298 GTARAKRKATGILERLKR 315 (323)
Q Consensus 298 ~~~~~~~~A~~~L~~l~~ 315 (323)
++..-...|..+|..|+.
T Consensus 450 g~~~eVd~ALdvL~~L~~ 467 (1323)
T 3s4w_B 450 GTEAEVDTALDVLLELIV 467 (1323)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHh
Confidence 765556667777776663
No 170
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=24.56 E-value=4.2e+02 Score=24.40 Aligned_cols=162 Identities=12% Similarity=0.100 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHhccccc-hhhhhhccCCcHHHHHHHH-hc-C----CHHHHHHHHHHHHHhcCCCCchhhhhccCChH
Q 020640 93 PNLQEDVITTLLNLSIHDN-NKKLVAETPMVIPLLMDAL-RS-G----TIETRSNAAAALFTLSALDSNKEVIGKSGALK 165 (323)
Q Consensus 93 ~~~~~~a~~~L~~ls~~~~-~~~~i~~~~g~i~~Lv~ll-~~-~----~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~ 165 (323)
-.+.+.+.-.|...+..+. +-.. +++.+-++| .+ . +++........+...+.++ .+.+.=-++
T Consensus 50 n~Lie~~~LnL~~~t~~~~~~~~~------ll~~Ik~iL~~~~~~~~lD~~~Li~Ll~~il~~~~Fd----~VLevysve 119 (500)
T 3vld_A 50 NTLLRKCSLNLVTVVSLPDMDVKP------LLATIKRFLTSNVSYDSLNYDYLLDVVDKLVPMADFD----DVLEVYSAE 119 (500)
T ss_dssp HHHHHHHHHHHHHSCSCCSCCCHH------HHHHHHHHHHCSSCCTTCCHHHHHHHHHHHHHHSCHH----HHHHHSCHH
T ss_pred HHHHHHHhhcchhcccCCcccHHH------HHHHHHHHHcCCccccccCHHHHHHHHHHHHhcCCHH----HHHHhCCHH
Confidence 4566666666776666554 2222 234455566 33 1 5666556666666665544 355555789
Q ss_pred HHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC----c-hHHHHHHHHHHHhcCHHHHHHHHh
Q 020640 166 PLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG----V-HVDELLAILAMLSTNHRAVEEIGD 240 (323)
Q Consensus 166 ~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~----~-~~~~a~~~L~~l~~~~~~~~~i~~ 240 (323)
.++..|.++.+.+...|+..+. ....+.-+...+.+..|+.++-+. . +....=.++..+++++-.|+.+.+
T Consensus 120 ~i~~aL~S~~~~l~~~~ckVI~----~s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~LssdeLirrril~ 195 (500)
T 3vld_A 120 DLVKALRSEIDPLKVAACRVIE----NSQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLSTDELIRRRLFD 195 (500)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHH----TCSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTTSHHHHHHHHT
T ss_pred HHHHHHhcCChHHHHHHHHHhc----ccCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 9999999999999999999887 345566666778999999988765 2 444555666677888878888876
Q ss_pred cCCHHHHHHHHhccCChhHHHHHHHHHHHh
Q 020640 241 LGGVSCMLRIIRESTCDRNKENCIAILHTI 270 (323)
Q Consensus 241 ~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L 270 (323)
+. .+ +..-++...+......-...+.-+
T Consensus 196 nn-l~-lL~~vK~~~~~i~~sRLLdll~il 223 (500)
T 3vld_A 196 NN-LP-YLVSVKGRMETVSFVRLIDFLTIE 223 (500)
T ss_dssp TT-HH-HHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred Hh-HH-HHHHHhcCCCceeHHHHHHHHHHH
Confidence 54 43 444444333244444444444444
No 171
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.87 E-value=1e+02 Score=20.95 Aligned_cols=37 Identities=11% Similarity=0.115 Sum_probs=23.7
Q ss_pred hHHHHHHc-----CCCCCCCCCC---CCccccchhhhhHHHHHHHHh
Q 020640 2 ISQWCRSQ-----GIELPNSVQY---INEEGITEADRDHFLSLLKKM 40 (323)
Q Consensus 2 ~~~w~~~~-----~~~~~~~~~~---~~~~~~~~~~~~~i~~Lv~~l 40 (323)
|++|+.++ ..+||-+..+ ...+...++ ..+..+++.+
T Consensus 35 I~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn--~~L~~~I~~~ 79 (94)
T 2yu4_A 35 IVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQD--EALRRAIENH 79 (94)
T ss_dssp HHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEEC--HHHHHHHHHH
T ss_pred HHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCC--HHHHHHHHHH
Confidence 78999765 3568875454 555555555 4566666666
No 172
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=21.16 E-value=7.4e+02 Score=26.05 Aligned_cols=263 Identities=13% Similarity=0.100 Sum_probs=133.5
Q ss_pred hhHHHHHHHHhcCCchhHHHHHHHHHHHhccChhhHHHHhh----h-----cCCHHHHHHhhcccccCCCCCHHHHHHHH
Q 020640 30 RDHFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGE----S-----HDAIPQLLSPLSESKCENGINPNLQEDVI 100 (323)
Q Consensus 30 ~~~i~~Lv~~l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~----~-----~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~ 100 (323)
..++..|.+++.+++......+.+|.++.. +++....+.+ . ...+|.++++|-... ++.-...++
T Consensus 191 ~~v~~~L~~lL~~~~~L~~~iLdaLs~L~L-s~~~l~~vr~~vl~~L~s~~~e~LP~lIkFLL~s~-----t~~~~~evI 264 (1323)
T 3s4w_B 191 ANVGKELGELLVQNTSLTVPILDVFSSLRL-DPNFLSKIRQLVMGKLSSVRLEDFPVIVKFLLHSV-----TDTTSLEVI 264 (1323)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHSCC-CHHHHHHHHHHHHHSTTSSCTTHHHHHHHHHHHSC-----SSTTHHHHH
T ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhccCChhhhHHHHHHHHHhC-----CHhhHHHHH
Confidence 356778888887777888999999999986 5655544331 0 234788888885432 122222333
Q ss_pred HHHHH-hcccc--------chhhhhhccC---------C----cHHHHHHHHhcC---CHHHHHHHHHHHHHhcCCCCch
Q 020640 101 TTLLN-LSIHD--------NNKKLVAETP---------M----VIPLLMDALRSG---TIETRSNAAAALFTLSALDSNK 155 (323)
Q Consensus 101 ~~L~~-ls~~~--------~~~~~i~~~~---------g----~i~~Lv~ll~~~---~~~~~~~a~~~L~~L~~~~~~~ 155 (323)
..|+. |-... .....+-..| | +...++..+++. +..+.+.-.+++.++....+
T Consensus 265 ~~LR~~L~~~~~~~p~~~~~s~~~~k~~~~~~~~~~~~~s~~~~~~lild~lks~l~~~k~i~eAwlK~I~~~~~~~~-- 342 (1323)
T 3s4w_B 265 AELRENLNVQQFILPSRIQASQSKLKSKGLASSSGNQENSDKDCIVLVFDVIKSAIRYEKTISEAWFKAIERIESAAE-- 342 (1323)
T ss_dssp HHHHHHHHCC----------------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHGGGSTT--
T ss_pred HHHHHHcCccccccchhhhhhhhhhhccccccCCccccccccchHHHHHHHHHHHHhcChHHHHHHHHHHhCCCcccc--
Confidence 44432 21100 0000110000 1 122355566553 56666666677777644322
Q ss_pred hhhhccCChHHHHHHh-hhcCHhHHHHHHHHHHHhccCCchhHHHHh----------hCchHHHHHHh----hcCc--hH
Q 020640 156 EVIGKSGALKPLIDLL-DEGHQSAMKDVASAIFNLCITHENKARAVR----------DGGVSVILKKI----MDGV--HV 218 (323)
Q Consensus 156 ~~i~~~g~i~~Lv~lL-~~~~~~~~~~al~aL~~L~~~~~~~~~i~~----------~g~v~~Lv~ll----~~~~--~~ 218 (323)
-..+..++=++ .+.+..-+..+-.++.+..........++. ....+.++.+. .+.+ ++
T Consensus 343 -----hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it~~ll~~~f~~h~~vL~~~f~siL~La~~Ll~S~~~~v~ 417 (1323)
T 3s4w_B 343 -----HKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQEQLLDSAFSTHYLVLKDICPSILLLAQTLFHSQDQRII 417 (1323)
T ss_dssp -----CCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHH
T ss_pred -----cchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 13444444332 333455677777777777665533332221 12444444432 2332 23
Q ss_pred HHHHHHHHHHhc--CHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhh
Q 020640 219 DELLAILAMLST--NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQ 296 (323)
Q Consensus 219 ~~a~~~L~~l~~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~ 296 (323)
+-+...-..+=. +.-.|+.+ +..|+.++-++. ..-...|+.+|..|+...+...+. .+-.+..++..+.
T Consensus 418 ~Fg~~lY~~lF~~fd~~~qqeV-----l~~Lv~hi~sg~-~~eVd~ALdvL~~L~~~~~~~l~~---~a~~l~giLD~l~ 488 (1323)
T 3s4w_B 418 LFGSLLYKYAFKFFDTYCQQEV-----VGALVTHVCSGT-EAEVDTALDVLLELIVLNASAMRL---NAAFVKGILDYLE 488 (1323)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHH-----HHHHHHHHHHCC-HHHHHHHHHHHHHHHHHCHHHHHH---THHHHHGGGGGGG
T ss_pred HHHHHHHHHHHHhccchhHHHH-----HHHHHhhhcCCC-cHHHHHHHHHHHHHHhcCHHHHhH---HHHHHHHHHHhhc
Confidence 323222221111 23344444 466777766555 444556999999999877653322 2334444555555
Q ss_pred cCCHHHHHHHHHHHHHHh
Q 020640 297 DGTARAKRKATGILERLK 314 (323)
Q Consensus 297 ~~~~~~~~~A~~~L~~l~ 314 (323)
+=+..--++.-.+|..++
T Consensus 489 ~l~~~QiRklf~iL~~la 506 (1323)
T 3s4w_B 489 NMSPQQIRKIFCILSTLA 506 (1323)
T ss_dssp GCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 445555555555555544
No 173
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=20.60 E-value=4.6e+02 Score=26.57 Aligned_cols=180 Identities=12% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccc-hhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHH------H
Q 020640 75 IPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN-NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALF------T 147 (323)
Q Consensus 75 i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~------~ 147 (323)
+.-|+++-- +..++++..|-.+|......-. .+..++.. +++.|-.-+...+.+-.+.|+.+|. .
T Consensus 135 l~dL~~Ls~------S~Y~~VR~~AQ~~L~~~~~~~~gs~~~iip~--ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~ 206 (997)
T 1vsy_5 135 LVDIIQLAT------SLYPDIYKPAQGTLVHCMKQLVGSYGVVINK--IIPSLEKAIKDHDYMKIQVILNVLLIKKIHRK 206 (997)
T ss_dssp HHHHHHHHT------SSCHHHHHHHHHHHHHHHTTBTTHHHHHHHH--HHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHhc------CchHHHHHHHHHHHHHHHHhcccHHHHHHHH--HHHHHhccccCCCHHHHHHHHHHHhhhhhhhH
Q ss_pred hcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhcc------------------------------------
Q 020640 148 LSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCI------------------------------------ 191 (323)
Q Consensus 148 L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~------------------------------------ 191 (323)
+..+..+... .++.|++....+.++++..+-.+...+..
T Consensus 207 ~~~d~~~~~~-----~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~ 281 (997)
T 1vsy_5 207 LMTDYKDIGR-----LIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLA 281 (997)
T ss_dssp GGGCHHHHHH-----HHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHH
T ss_pred HhcChHHHHH-----HHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHH
Q ss_pred CCchhHHHHh--hCchHHHHHHhhcC-----chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHH
Q 020640 192 THENKARAVR--DGGVSVILKKIMDG-----VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCI 264 (323)
Q Consensus 192 ~~~~~~~i~~--~g~v~~Lv~ll~~~-----~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~ 264 (323)
....+....+ .+....|+++.++. .....++..|.++....+. .....++..+++.+.+++ +.++..|.
T Consensus 282 ~~~~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~---~~~~~~v~~~~~~l~~dh-p~~R~~a~ 357 (997)
T 1vsy_5 282 KKKKREYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLES---KPDKRAVFSIISQISTKH-PEIIHLVV 357 (997)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSC---CCCHHHHHHHHGGGGGCC-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHhhcCCC-HHHHHHHH
Q ss_pred HHHHHhc
Q 020640 265 AILHTIC 271 (323)
Q Consensus 265 ~~L~~L~ 271 (323)
.++..+.
T Consensus 358 ~~l~~il 364 (997)
T 1vsy_5 358 KSLLSTC 364 (997)
T ss_dssp HHHTHHH
T ss_pred HHHHHHH
No 174
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=20.28 E-value=2.8e+02 Score=20.80 Aligned_cols=96 Identities=13% Similarity=0.105 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHH
Q 020640 47 QTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLL 126 (323)
Q Consensus 47 ~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~L 126 (323)
+..-+-.+..... ....+..|.+ .|++..+-..|....++.=++..++...+.+|.++-. .+..+.++ |+-+.+
T Consensus 37 KlklL~~V~~~l~-k~~l~~~~ld-~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI---~~e~Lk~S-glGkvv 110 (145)
T 2xpp_A 37 KIENVEEISDILM-SKALQESLLD-EGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKI---HKEHLVTS-GVGKIV 110 (145)
T ss_dssp HHHHHHHHHHHHT-CTTTHHHHHH-TTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCC---CHHHHHHH-CHHHHH
T ss_pred HHhhHHHHHHHHh-hHHHHHHHHH-cCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCC---CHHHhhcC-CCCcch
Confidence 4444555555553 4567889999 9999999999985544334578899999999998853 46667665 444444
Q ss_pred HHHHhc--CCHHHHHHHHHHHHHh
Q 020640 127 MDALRS--GTIETRSNAAAALFTL 148 (323)
Q Consensus 127 v~ll~~--~~~~~~~~a~~~L~~L 148 (323)
+.+-++ ++++.+..|-..+..-
T Consensus 111 ~~l~k~~~et~~nk~la~~Li~~W 134 (145)
T 2xpp_A 111 YFYSINPKESKEVRASAKALVQKW 134 (145)
T ss_dssp HHHHHCTTSCHHHHHHHHHHHHHH
T ss_pred hhhhcCCccCHHHHHHHHHHHHHH
Confidence 444344 3677777777666543
Done!