Query 020642
Match_columns 323
No_of_seqs 121 out of 496
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 06:02:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020642.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020642hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zl8_A LIN-7; heterodimer, alp 16.6 58 0.002 22.6 1.5 12 77-88 41-52 (53)
2 1v54_M VIIIB, IX, cytochrome C 11.7 1.7E+02 0.0057 19.8 2.7 35 6-42 10-44 (46)
3 1kbh_B CREB-binding protein, n 10.5 2E+02 0.007 20.3 2.8 28 28-55 10-37 (59)
4 2yvc_D Neprilysin; protein-pep 10.1 68 0.0023 18.8 0.2 8 1-8 7-14 (26)
5 2y69_M Cytochrome C oxidase po 9.1 2.9E+02 0.0098 20.3 3.4 35 6-42 34-68 (70)
6 3ddl_A Xanthorhodopsin; carote 9.1 9.9E+02 0.034 21.3 8.9 63 3-66 5-67 (273)
7 1zoq_C CREB-binding protein, i 8.6 1.3E+02 0.0044 20.3 1.2 27 29-55 4-30 (47)
8 3m73_A Tellurite resistance pr 8.2 5.5E+02 0.019 23.2 5.9 55 11-66 165-219 (314)
9 4htp_A DNA ligase 4; helical d 6.9 2.2E+02 0.0074 25.2 2.3 21 32-52 171-191 (240)
10 3am6_A Rhodopsin-2, AR2; seven 4.9 1.5E+03 0.05 19.4 7.6 57 5-66 4-60 (229)
No 1
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=16.61 E-value=58 Score=22.63 Aligned_cols=12 Identities=42% Similarity=0.935 Sum_probs=10.6
Q ss_pred HHhhHHHHHHHh
Q 020642 77 FLDSVKECYEAL 88 (323)
Q Consensus 77 y~~~ird~YEA~ 88 (323)
|++.+||+||-.
T Consensus 41 F~~aVREVYEhv 52 (53)
T 1zl8_A 41 FFGAVREVYETV 52 (53)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 899999999954
No 2
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=11.66 E-value=1.7e+02 Score=19.78 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=19.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q 020642 6 MSRAQITLMGSGLCVMLTMHFTMRLLQQHLFYWKNPK 42 (323)
Q Consensus 6 ~~~~~~~l~iag~~~~lt~~is~~~i~~Hl~~Y~~P~ 42 (323)
+++.+-+. ..++|. +++.+-.-=+..||.+|.+.+
T Consensus 10 ~s~~E~ai-gl~v~f-~~~L~PagWVLshL~~YKk~e 44 (46)
T 1v54_M 10 TSPKEQAI-GLSVTF-LSFLLPAGWVLYHLDNYKKSS 44 (46)
T ss_dssp CCHHHHHH-HHHHHH-HHHHHHHHHHHHTHHHHHTC-
T ss_pred CCHHHHHH-HHHHHH-HHHHhhHHHHHHHHHHhcccc
Confidence 45555543 333333 344444444669999998863
No 3
>1kbh_B CREB-binding protein, nuclear receptor coactivator; nuclear hormone receptors, ACTR, CBP, transcription; NMR {Mus musculus} SCOP: a.153.1.1 PDB: 2c52_A 2kkj_A 2l14_A
Probab=10.46 E-value=2e+02 Score=20.26 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=22.6
Q ss_pred HHHHHHHHhhcCCcchhhHHHHHHHHHH
Q 020642 28 MRLLQQHLFYWKNPKEQKAIIIIILMAP 55 (323)
Q Consensus 28 ~~~i~~Hl~~Y~~P~~Qr~iiRIl~mvP 55 (323)
+-.+.+-+++=+.|+.|-+++.||=-=|
T Consensus 10 LqqLl~tlksp~speqqqqvl~ILksNP 37 (59)
T 1kbh_B 10 LQDLLRTLKSPSSPQQQQQVLNILKSNP 37 (59)
T ss_dssp HHHHHHHHHSCTTTTCSTHHHHHHTTSH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhCH
Confidence 4567788999999999999999984433
No 4
>2yvc_D Neprilysin; protein-peptide complex, cell adhesion; 3.20A {Mus musculus}
Probab=10.09 E-value=68 Score=18.82 Aligned_cols=8 Identities=25% Similarity=0.671 Sum_probs=4.3
Q ss_pred CCCCCCCh
Q 020642 1 MDLSTMSR 8 (323)
Q Consensus 1 ~~~~~~~~ 8 (323)
|||+++++
T Consensus 7 mditdina 14 (26)
T 2yvc_D 7 MDITDINA 14 (26)
T ss_pred cccccccC
Confidence 55555554
No 5
>2y69_M Cytochrome C oxidase polypeptide 8H; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=9.14 E-value=2.9e+02 Score=20.26 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=19.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q 020642 6 MSRAQITLMGSGLCVMLTMHFTMRLLQQHLFYWKNPK 42 (323)
Q Consensus 6 ~~~~~~~l~iag~~~~lt~~is~~~i~~Hl~~Y~~P~ 42 (323)
+++.+-+. ..++|. +++.+-.-=|..||.+|.+.+
T Consensus 34 ~s~~E~ai-gltv~f-~~~L~PagWVLshLe~YKk~e 68 (70)
T 2y69_M 34 TSPKEQAI-GLSVTF-LSFLLPAGWVLYHLDNYKKSS 68 (70)
T ss_dssp CCHHHHHH-HHHHHH-HHHHHHHHHHHHTHHHHSCC-
T ss_pred cCHHHHHH-HHHHHH-HHHHhhHHHHHHHHHHhcccc
Confidence 45555543 333333 344444444669999999873
No 6
>3ddl_A Xanthorhodopsin; carotenoid, ION pump, light-harvesting, antenna, retinal, transport protein; HET: SXN UNL RET PX4 PCW; 1.90A {Salinibacter ruber}
Probab=9.06 E-value=9.9e+02 Score=21.35 Aligned_cols=63 Identities=11% Similarity=0.080 Sum_probs=37.2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHHHhh
Q 020642 3 LSTMSRAQITLMGSGLCVMLTMHFTMRLLQQHLFYWKNPKEQKAIIIIILMAPIYAVDSFVGLL 66 (323)
Q Consensus 3 ~~~~~~~~~~l~iag~~~~lt~~is~~~i~~Hl~~Y~~P~~Qr~iiRIl~mvPvYai~S~lsl~ 66 (323)
+.+++..|..+.-.-+ -+.+.....-.++.-+...+.|...|...-+..+++..|-.+.+++.
T Consensus 5 ~~~~~~~~~~~~~~~l-w~~~a~m~~atl~F~~~~~~v~~~~R~~~~v~~lit~IAai~Yf~Ma 67 (273)
T 3ddl_A 5 LPTLTPGQYSLVFNMF-SFTVATMTASFVFFVLARNNVAPKYRISMMVSALVVFIAGYHYFRIT 67 (273)
T ss_dssp CCCBCHHHHHHHHHHH-HHHHHHHHHHHHHHHHGGGGSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCChHHHHHHHHHH-HHHHHHHHHHHHHHHHHHccCCcceehhhHHHHHHHHHHHHHHHHHH
Confidence 4567777665442111 11112222222334445566888888888888888888888777765
No 7
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=8.56 E-value=1.3e+02 Score=20.34 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=20.7
Q ss_pred HHHHHHHhhcCCcchhhHHHHHHHHHH
Q 020642 29 RLLQQHLFYWKNPKEQKAIIIIILMAP 55 (323)
Q Consensus 29 ~~i~~Hl~~Y~~P~~Qr~iiRIl~mvP 55 (323)
-.+.+-+++=+.|+.|-++++|+=-=|
T Consensus 4 qqLl~tlksp~sp~qqqqvl~ILksnP 30 (47)
T 1zoq_C 4 QDLLRTLKSPSSPQQQQQVLNILKSNP 30 (47)
T ss_dssp HHHHHTCCSCCCHHHHHHHHHHHHTCH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHcCH
Confidence 455677788888899999999985444
No 8
>3m73_A Tellurite resistance protein TEHA homolog; anion channel, alpha helical integral membrane protein, STRU genomics, PSI-2; HET: BOG; 1.15A {Haemophilus influenzae} PDB: 3m75_A* 3m74_A* 3m77_A* 3m71_A* 3m7b_A* 3m7c_A* 3m7e_A* 3m7l_A* 3m78_A* 3m76_A* 3m72_A*
Probab=8.24 E-value=5.5e+02 Score=23.16 Aligned_cols=55 Identities=16% Similarity=0.176 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHHHhh
Q 020642 11 ITLMGSGLCVMLTMHFTMRLLQQHLFYWKNPKEQKAIIIIILMAPIYAVDSFVGLL 66 (323)
Q Consensus 11 ~~l~iag~~~~lt~~is~~~i~~Hl~~Y~~P~~Qr~iiRIl~mvPvYai~S~lsl~ 66 (323)
.++..-|....+.+.+.....+|... -.-|++.|.-+.|..-+|-.+..+++.+.
T Consensus 165 ~~~~~~~~G~~~~l~l~~i~~~Rl~~-~~lp~~~~P~~~I~~aP~~~~~~a~l~l~ 219 (314)
T 3m73_A 165 LGYLFFGAGMIAWIIFEPVLLQHLRI-SSLEPQFRATMGIVLAPAFVCVSAYLSIN 219 (314)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH-TCCCHHHHGGGGGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcc-cCCChhhhhHHHHHHhhHHHHHHHHHHHc
Confidence 33333333334444444444445544 45578899999999999999999999885
No 9
>4htp_A DNA ligase 4; helical domain, DNA binding domain, DNA, ligase-HYD complex; HET: DNA; 2.25A {Homo sapiens} PDB: 4hto_A*
Probab=6.91 E-value=2.2e+02 Score=25.21 Aligned_cols=21 Identities=29% Similarity=0.275 Sum_probs=15.7
Q ss_pred HHHHhhcCCcchhhHHHHHHH
Q 020642 32 QQHLFYWKNPKEQKAIIIIIL 52 (323)
Q Consensus 32 ~~Hl~~Y~~P~~Qr~iiRIl~ 52 (323)
...+..=.+|.+||+++||+.
T Consensus 171 l~~Ll~~~t~~E~k~liRiil 191 (240)
T 4htp_A 171 LLQLITQSSALEQKWLIRMII 191 (240)
T ss_dssp HHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHh
Confidence 344444478999999999974
No 10
>3am6_A Rhodopsin-2, AR2; seven trans-membrane, transport protein; HET: RET CLR; 3.20A {Acetabularia acetabulum}
Probab=4.92 E-value=1.5e+03 Score=19.44 Aligned_cols=57 Identities=11% Similarity=0.059 Sum_probs=32.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHHHhh
Q 020642 5 TMSRAQITLMGSGLCVMLTMHFTMRLLQQHLFYWKNPKEQKAIIIIILMAPIYAVDSFVGLL 66 (323)
Q Consensus 5 ~~~~~~~~l~iag~~~~lt~~is~~~i~~Hl~~Y~~P~~Qr~iiRIl~mvPvYai~S~lsl~ 66 (323)
+.+.+...|+-.+.+.+++..+. .-+.....|...|...-+..+++..|-.+.+.+.
T Consensus 4 ~~~~~gs~~lw~~~a~m~~~tv~-----f~~~~~~~~~~~r~~~~~~~lvt~iaa~~Y~~Ma 60 (229)
T 3am6_A 4 VETETGMIAQWIVFAIMAAAAIA-----FGVAVHFRPSELKSAYYINIAICTIAATAYYAMA 60 (229)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH-----HHHHGGGCC--CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcchhHHHHHHHHHHHHHHHH-----HHHHHhccCCcceehhHHHHHHHHHHHHHHHHHH
Confidence 34555555554443333322222 2223337777888888888899988887777776
Done!