Query 020642
Match_columns 323
No_of_seqs 121 out of 496
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 06:03:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020642.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020642hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zl8a1 a.194.1.1 (A:4-53) Lin 21.7 18 0.0013 23.3 1.5 12 77-88 38-49 (50)
2 d1y74a1 a.194.1.1 (A:17-73) Li 18.1 24 0.0017 23.3 1.5 12 77-88 39-50 (57)
3 d1rzhh2 f.23.10.1 (H:11-35) Ph 11.9 1.2E+02 0.0088 16.4 3.4 17 214-230 9-25 (26)
4 d1v54m_ f.23.7.1 (M:) Mitochon 7.2 1.5E+02 0.011 18.2 2.6 33 6-40 10-42 (43)
5 d1zoqc1 a.153.1.1 (C:2065-2111 6.8 83 0.006 19.5 1.2 27 29-55 4-30 (47)
6 d2fug21 c.47.1.21 (2:3-180) NA 5.7 2.2E+02 0.016 22.1 3.7 36 32-67 32-69 (178)
7 d1rkla_ f.23.30.1 (A:) Oligosa 4.4 3.6E+02 0.026 15.4 3.8 21 215-235 15-35 (36)
8 d1uaza_ f.13.1.1 (A:) Archaerh 4.2 7.9E+02 0.058 19.2 7.7 65 219-288 153-221 (236)
9 d1x9na1 a.235.1.1 (A:262-533) 3.4 2.6E+02 0.019 23.0 2.5 21 31-52 166-186 (272)
10 d1eysh2 f.23.10.1 (H:7-43) Pho 3.0 3.5E+02 0.026 15.8 2.0 16 117-132 12-27 (37)
No 1
>d1zl8a1 a.194.1.1 (A:4-53) Lin-7 {Caenorhabditis elegans [TaxId: 6239]}
Probab=21.74 E-value=18 Score=23.27 Aligned_cols=12 Identities=42% Similarity=0.935 Sum_probs=10.6
Q ss_pred HHhhHHHHHHHh
Q 020642 77 FLDSVKECYEAL 88 (323)
Q Consensus 77 y~~~ird~YEA~ 88 (323)
|++.+||+||-.
T Consensus 38 F~~avREVYe~v 49 (50)
T d1zl8a1 38 FFGAVREVYETV 49 (50)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 899999999953
No 2
>d1y74a1 a.194.1.1 (A:17-73) Lin-7 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.14 E-value=24 Score=23.27 Aligned_cols=12 Identities=42% Similarity=0.880 Sum_probs=10.7
Q ss_pred HHhhHHHHHHHh
Q 020642 77 FLDSVKECYEAL 88 (323)
Q Consensus 77 y~~~ird~YEA~ 88 (323)
|++.+||+||-.
T Consensus 39 F~~avREVYehv 50 (57)
T d1y74a1 39 FCSAIREVYEQL 50 (57)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 899999999954
No 3
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=11.86 E-value=1.2e+02 Score=16.43 Aligned_cols=17 Identities=6% Similarity=0.128 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhh
Q 020642 214 VSLALYSLVVFYHVFAK 230 (323)
Q Consensus 214 ~~~ALy~L~~Fy~~~k~ 230 (323)
.+++.++++++|..+..
T Consensus 9 ~fw~ffalli~ylqten 25 (26)
T d1rzhh2 9 SFWIFLAGLIYYLQTEN 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccc
Confidence 56788899999987753
No 4
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.18 E-value=1.5e+02 Score=18.17 Aligned_cols=33 Identities=15% Similarity=0.172 Sum_probs=18.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 020642 6 MSRAQITLMGSGLCVMLTMHFTMRLLQQHLFYWKN 40 (323)
Q Consensus 6 ~~~~~~~l~iag~~~~lt~~is~~~i~~Hl~~Y~~ 40 (323)
++..+.+.- .++| +++++.-.--|..||.+|.+
T Consensus 10 ls~~E~aig-Lt~~-f~~~L~PaGwVLshLe~YKk 42 (43)
T d1v54m_ 10 TSPKEQAIG-LSVT-FLSFLLPAGWVLYHLDNYKK 42 (43)
T ss_dssp CCHHHHHHH-HHHH-HHHHHHHHHHHHHTHHHHHT
T ss_pred CCHHHHHHH-HHHH-HHHHHccHHHHHHHHHHhcc
Confidence 445555432 2233 33444444456799999865
No 5
>d1zoqc1 a.153.1.1 (C:2065-2111) Nuclear receptor coactivator CBP/p300 ibid domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.75 E-value=83 Score=19.45 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=20.5
Q ss_pred HHHHHHHhhcCCcchhhHHHHHHHHHH
Q 020642 29 RLLQQHLFYWKNPKEQKAIIIIILMAP 55 (323)
Q Consensus 29 ~~i~~Hl~~Y~~P~~Qr~iiRIl~mvP 55 (323)
-.+.+-|++=+.|+.|.+++-|+=--|
T Consensus 4 q~Ll~tLrsP~sP~QQqQvL~ILksNP 30 (47)
T d1zoqc1 4 QDLLRTLKSPSSPQQQQQVLNILKSNP 30 (47)
T ss_dssp HHHHHTCCSCCCHHHHHHHHHHHHTCH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHcCH
Confidence 345677788888999999998885544
No 6
>d2fug21 c.47.1.21 (2:3-180) NADH-quinone oxidoreductase chain 2, NQO2 {Thermus thermophilus [TaxId: 274]}
Probab=5.73 E-value=2.2e+02 Score=22.07 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=23.7
Q ss_pred HHHHhhcCCcchhhHHHHHHHHHH--HHHHHHHHHhhc
Q 020642 32 QQHLFYWKNPKEQKAIIIIILMAP--IYAVDSFVGLLD 67 (323)
Q Consensus 32 ~~Hl~~Y~~P~~Qr~iiRIl~mvP--vYai~S~lsl~~ 67 (323)
.|+-..|-.++.++.|=+.+-|.| ||++.||-..+.
T Consensus 32 iQ~~~Gyip~~al~~iA~~l~v~~a~V~~vatFY~~f~ 69 (178)
T d2fug21 32 VQQEEGWIRPERIEEIARLVGTTPTEVMGVASFYSYYQ 69 (178)
T ss_dssp HHHHHSSCCHHHHHHHHHHHTSCHHHHHHHHHHSSSSC
T ss_pred HHHHcCCCCHHHHHHHHHHHCCCHHHHHHHHHhcchhc
Confidence 345555666667777777777766 677777766653
No 7
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.43 E-value=3.6e+02 Score=15.40 Aligned_cols=21 Identities=24% Similarity=0.699 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHhhhcCCC
Q 020642 215 SLALYSLVVFYHVFAKELGPH 235 (323)
Q Consensus 215 ~~ALy~L~~Fy~~~k~~L~~~ 235 (323)
.+.|..|++.|++..+...|.
T Consensus 15 gi~mmtliviyh~~~st~s~k 35 (36)
T d1rkla_ 15 GIVMMTLIVIYHAVDSTMSPK 35 (36)
T ss_dssp HHHHHHHHHHHHHHTSCCCCC
T ss_pred hHHHHHHHHHHhhhccccCCC
Confidence 456778999999998877764
No 8
>d1uaza_ f.13.1.1 (A:) Archaerhodopsin-1 {Archaeon Halobacterium sp. [TaxId: 2243]}
Probab=4.22 E-value=7.9e+02 Score=19.17 Aligned_cols=65 Identities=15% Similarity=0.216 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhhhcCCCCCchh--HhHHHHHHHHHHHHHHHHHHHHhcC--ccccCCCCCCHHHHHHHHhhHHH
Q 020642 219 YSLVVFYHVFAKELGPHKPLAK--FMCIKGIVFFCFWQDVVLEILAGMG--IIRSHHFWLDVEHINEAIQNVLV 288 (323)
Q Consensus 219 y~L~~Fy~~~k~~L~~~~P~~K--Fl~iK~VvfltfwQ~~ii~iL~~~g--vi~~~~~~~~~~~~~~~i~~~li 288 (323)
|-+...+...++..+..+|-.+ |...+..+.+.|.--=+..++...| .+. .+.+++..++.|++-
T Consensus 153 ~i~y~l~~~~~~~~~~~~~~~~~~~~~l~~~~~v~W~iYPi~~~l~~~g~~~i~-----~~~~~i~Y~ilDli~ 221 (236)
T d1uaza_ 153 VVLYFLATSLRAAAKERGPEVASTFNTLTALVLVLWTAYPILWIIGTEGAGVVG-----LGIETLLFMVLDVTA 221 (236)
T ss_dssp HHHHHHHTHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCSC-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCC-----hhhHHHHHHHHHHHH
Confidence 3333445555655554333333 5567777777776655555553333 332 244666777777653
No 9
>d1x9na1 a.235.1.1 (A:262-533) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.36 E-value=2.6e+02 Score=22.97 Aligned_cols=21 Identities=10% Similarity=0.023 Sum_probs=15.1
Q ss_pred HHHHHhhcCCcchhhHHHHHHH
Q 020642 31 LQQHLFYWKNPKEQKAIIIIIL 52 (323)
Q Consensus 31 i~~Hl~~Y~~P~~Qr~iiRIl~ 52 (323)
+.+.+.+ .+|.++|+++|++.
T Consensus 166 i~~Ll~~-~~~~E~kyliR~l~ 186 (272)
T d1x9na1 166 IKGLFVA-CRHSEARFIARSLS 186 (272)
T ss_dssp HHHHHHH-CCSTHHHHHHHHHT
T ss_pred HHHHHHh-CCHHHHHHHHHHHH
Confidence 3444545 57889999999864
No 10
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=2.99 E-value=3.5e+02 Score=15.80 Aligned_cols=16 Identities=19% Similarity=0.208 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhccCc
Q 020642 117 VIAKFMALMYSYLKIS 132 (323)
Q Consensus 117 viy~F~~Ll~~ylGg~ 132 (323)
+.+.||..++-|+-.+
T Consensus 12 ~Fw~FFagLi~YL~rE 27 (37)
T d1eysh2 12 AFWLFFFGLIIYLRRE 27 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 6677888899898665
Done!