Query 020643
Match_columns 323
No_of_seqs 188 out of 325
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 04:01:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020643.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020643hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3117 Protein involved in rR 100.0 4.4E-52 9.6E-57 388.6 21.5 280 11-300 3-311 (340)
2 PF04000 Sas10_Utp3: Sas10/Utp 99.8 5.2E-18 1.1E-22 132.6 10.1 82 25-106 1-85 (85)
3 KOG4835 DNA-binding protein C1 98.2 1.1E-05 2.5E-10 70.0 10.0 54 62-115 48-101 (144)
4 KOG3118 Disrupter of silencing 98.2 4.4E-06 9.6E-11 84.3 7.4 112 11-122 222-338 (517)
5 PF10303 DUF2408: Protein of u 63.9 33 0.00071 29.6 7.2 42 66-107 80-124 (134)
6 PHA03225 DNA packaging protein 58.0 20 0.00044 30.8 4.7 46 61-107 62-113 (125)
7 PF10018 Med4: Vitamin-D-recep 55.1 41 0.00089 30.3 6.6 70 10-80 29-98 (188)
8 KOG3118 Disrupter of silencing 54.5 16 0.00035 38.0 4.2 84 10-106 202-292 (517)
9 PF04108 APG17: Autophagy prot 45.9 73 0.0016 32.3 7.4 114 9-122 240-380 (412)
10 PF03581 Herpes_UL33: Herpesvi 44.8 51 0.0011 26.0 4.7 45 62-107 20-66 (75)
11 COG4477 EzrA Negative regulato 40.8 3E+02 0.0066 29.4 10.9 73 53-130 161-241 (570)
12 PF15467 SGIII: Secretogranin- 37.0 50 0.0011 33.3 4.4 45 18-62 266-319 (453)
13 PF12432 DUF3677: Protein of u 36.6 33 0.00071 27.2 2.6 42 63-104 26-67 (83)
14 PF07030 DUF1320: Protein of u 23.8 2.1E+02 0.0045 24.1 5.5 45 62-107 57-101 (130)
15 PHA03236 DNA packaging protein 20.2 2E+02 0.0043 24.9 4.6 21 62-83 59-79 (127)
No 1
>KOG3117 consensus Protein involved in rRNA processing [RNA processing and modification]
Probab=100.00 E-value=4.4e-52 Score=388.61 Aligned_cols=280 Identities=30% Similarity=0.419 Sum_probs=216.3
Q ss_pred hHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 020643 11 SDERVKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEG 90 (323)
Q Consensus 11 ~l~~l~kesPEl~~LL~el~~~l~~v~~~v~~l~~~vk~~~~~~~~GislL~~K~~lLLsY~~nL~~ylllK~~g~si~~ 90 (323)
.+..+..++|.|..|+..+..++..+..+++.+++.+..+..++.+|+|||++||++||+|++.|+|+|+-|+.|.++..
T Consensus 3 ~l~~l~a~~es~~~L~~~l~~q~~~~~k~~~~l~e~l~~ta~~~e~gvSlLsLKnqlll~Yl~~Lt~Lil~klddes~~~ 82 (340)
T KOG3117|consen 3 LLKSLTATSESLERLSGILSNQMDVLNKSIQTLLEALPKTASSSEDGVSLLSLKNQLLLSYLQKLTFLILVKLDDESFLQ 82 (340)
T ss_pred CccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccCceeeeechHHHHHHHHHHHHHHHHHhccccccc
Confidence 34578899999999999999999999999999999998877788999999999999999999999999999999999999
Q ss_pred C-hHHHHHHHHHHHHHHHhhHHHhhHHHHHHHhhhhhcCCCcCCCC---CCCCCCCCCCCccchhccCCCCCccccc---
Q 020643 91 H-PVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVN---PSANESGEPQKTEDLLKYRPNPDMLVSK--- 163 (323)
Q Consensus 91 h-Pvv~rLv~~R~~LeKirpLe~kL~yQIdKLl~~~a~~~~~~~~~---~~~~~~~~~~~~~D~L~~rPnp~~l~~~--- 163 (323)
| |+|.|||++|++||||+|||+||+||||||+ +++++++.... ...++........-.+.|+||.+.+...
T Consensus 83 h~daveRlvqhRvvlEKirPLE~KlkyQiDKLl--raav~~es~~sn~e~r~n~~~~l~n~s~~~~~~~~~s~~~~~sd~ 160 (340)
T KOG3117|consen 83 HQDAVERLVQHRVVLEKIRPLENKLKYQIDKLL--RAAVRKESIGSNKEPRNNGNDKLSNMSLKLHYKPNLSEFADDSDG 160 (340)
T ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--HHHhhhcccccccccccCCCCcccccccccccCcccccccccccC
Confidence 9 9999999999999999999999999999999 66654433211 1111111111111234455555544332
Q ss_pred ---------CCCCC------------CCCCccccCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhc
Q 020643 164 ---------TDMTT------------EDGAGVYKPPKFAPASMDEDKTSRKERNALRKEKETLRQARQSTFMRELVNDLE 222 (323)
Q Consensus 164 ---------~~~~~------------~~~~gvYrPPKia~~~~~~~~~~~~er~~~r~~k~~~rra~~S~~~~el~~e~s 222 (323)
.++.+ ...+|+|+||||.||.|++. +..+.++. ..++ ..|++++|++|+||..+||
T Consensus 161 peeee~edde~~ksa~~~e~~~ee~~~~e~gkYvpPRI~aV~~d~~-te~er~nk-~~E~-akrsamSssvi~elk~q~S 237 (340)
T KOG3117|consen 161 PEEEENEDDEDDKSAISSEDEEEELRSAEDGKYVPPRIRAVTYDEK-TERERPNK-LVEE-AKRSAMSSSVIQELKSQYS 237 (340)
T ss_pred cccccccccccccccccchhhhhhhcccccCcccCCceeeecCchh-hhhcchhH-HHHH-HHHHhhhHHHHHHHHHhcc
Confidence 21111 12369999999999999932 22222222 2232 3478999999999999999
Q ss_pred CCCchhhhcccchhHHhhHHHHHHHHHHHHhhhcccccC-CChHHHHHhhhhhhhhccccCccccccccccCCCCCccC
Q 020643 223 GRPEEVREVVGVESRELTRYKEMMEERARQEEELFTRAP-LTKMEKKKMKHLKKSRNGLLGLTESFYDEIKSLPIEEKD 300 (323)
Q Consensus 223 d~PeE~~~~~g~~~~~~~r~~~~~~Er~~yEE~nftRLp-~sKkekkr~K~~~~~~~~~~g~~~~~f~d~~~l~~~~~~ 300 (323)
|+|+|+... .+....|+.++++++..|||+|||||| ++|++|+++||.+++ .-.+.+|+||+|+++|+.|...
T Consensus 238 Dapeeir~~---~~~k~~R~~qk~rrri~yEEsnftRL~~lsK~ekrksKr~~r~--~~~~~~~s~~eDfsals~g~~~ 311 (340)
T KOG3117|consen 238 DAPEEIRGR---VIHKDERELQKMRRRIEYEESNFTRLPKLSKKEKRKSKRVKRH--DYGGEDLSLDEDFSALSLGLTR 311 (340)
T ss_pred ccchhhhhc---ccchhHHHHHHHHHhhhhhhhhhhhhhhccHHHHHHHHHhhhh--hccccccccccchhhhcccccc
Confidence 999987633 233445667778888999999999999 799999999997654 4556788899999999987655
No 2
>PF04000 Sas10_Utp3: Sas10/Utp3/C1D family; InterPro: IPR007146 This family contains Utp3 and LCP5 which are components of the U3 ribonucleoprotein complex []. It also includes the Homo sapiens (Human) C1D protein and Saccharomyces cerevisiae (Baker's yeast) YHR081W (rrp47), an exosome-associated protein required for the 3' processing of stable RNAs [] and Sas10 which has been identified as a regulator of chromatin silencing []. This entry also includes the human protein Neuroguidin, an initiation factor 4E (eIF4E)-binding protein [].
Probab=99.75 E-value=5.2e-18 Score=132.55 Aligned_cols=82 Identities=43% Similarity=0.733 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---cCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Q 020643 25 LLREMKEGLDKLRSKVQSLITKVK---GNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEGHPVVQSLVEIR 101 (323)
Q Consensus 25 LL~el~~~l~~v~~~v~~l~~~vk---~~~~~~~~GislL~~K~~lLLsY~~nL~~ylllK~~g~si~~hPvv~rLv~~R 101 (323)
||++|.+++.++.+.++++++.++ .+..++.+|+||+.+|++++++||+|++||+++|++|.++.+|||+++|+++|
T Consensus 1 ll~~l~~~l~~~~~~l~~l~~~~~~~~~~~l~~~~g~sl~~~K~~~llaY~~~~~~~~~lk~~g~~~~~hpv~~~L~r~r 80 (85)
T PF04000_consen 1 LLKELSESLDEVEESLQPLLEKVKEEKEEELSPSDGISLLQAKNQLLLAYIINLLFYMYLKLSGVDPKDHPVMKELVRIR 80 (85)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHH
Confidence 588999999999999999998884 56678999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 020643 102 LFLEK 106 (323)
Q Consensus 102 ~~LeK 106 (323)
++|+|
T Consensus 81 ~~leK 85 (85)
T PF04000_consen 81 QYLEK 85 (85)
T ss_pred HHHcC
Confidence 99986
No 3
>KOG4835 consensus DNA-binding protein C1D involved in regulation of double-strand break repair [Replication, recombination and repair]
Probab=98.21 E-value=1.1e-05 Score=69.97 Aligned_cols=54 Identities=30% Similarity=0.599 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHhhHHHhhH
Q 020643 62 EAKHLLLLNYCQSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQ 115 (323)
Q Consensus 62 ~~K~~lLLsY~~nL~~ylllK~~g~si~~hPvv~rLv~~R~~LeKirpLe~kL~ 115 (323)
.+|-.+++.|+++.+||+.+++.|....+|||+..|-+.|++++|++.++.+++
T Consensus 48 qAKld~~~~ya~~sl~~~~l~~kG~da~dh~V~~EL~Rvk~y~~k~Kqi~d~~~ 101 (144)
T KOG4835|consen 48 QAKLDLTLAYAINSLFWSFLKLKGVDASDHPVLQELERVKVYMAKIKQINDRVK 101 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHhhcc
Confidence 489999999999999999999999999999999999999999999998888765
No 4
>KOG3118 consensus Disrupter of silencing SAS10 [Chromatin structure and dynamics]
Probab=98.16 E-value=4.4e-06 Score=84.30 Aligned_cols=112 Identities=18% Similarity=0.176 Sum_probs=102.9
Q ss_pred hHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCCCCccHHHHHHH---HHHHHHHHHHHHHHHHhcC
Q 020643 11 SDERVKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGN--NYPTVDGISYLEAKHL---LLLNYCQSIVYYLLRKAKG 85 (323)
Q Consensus 11 ~l~~l~kesPEl~~LL~el~~~l~~v~~~v~~l~~~vk~~--~~~~~~GislL~~K~~---lLLsY~~nL~~ylllK~~g 85 (323)
++..++.+.|+.+.++..++..|.++...+.|+++.+... .+|+..+-+||..... +++.||.+++|++++.+..
T Consensus 222 ~~~~~~~~~~e~~~~~~~~k~~l~el~s~l~t~~~~l~~~~~~L~~gee~~~lr~hp~m~~l~~~ke~w~s~~~l~s~~~ 301 (517)
T KOG3118|consen 222 QMLVLYSSEPEIVELLEPLKDLLEELESKLNTYMSYLKELDEELPPGEEESLLRSHPNMAVLKVVKEDWLSFPLLDSVDR 301 (517)
T ss_pred hhhhhhcccHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhhhhcCcchhhhhhhhhhhhhhcccccccc
Confidence 4456788999999999999999999999999999999876 6788889999998888 9999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhhHHHhhHHHHHHHh
Q 020643 86 LSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLT 122 (323)
Q Consensus 86 ~si~~hPvv~rLv~~R~~LeKirpLe~kL~yQIdKLl 122 (323)
.+-..|+|..+||-++.++.++...+.+.+..++++.
T Consensus 302 vts~~~~v~~~i~~~~k~~~kldn~~~e~~e~g~k~k 338 (517)
T KOG3118|consen 302 VTSDEAKVEVRIVLAEKQPMKLDNAREEKKEKGDKLK 338 (517)
T ss_pred ccccccccchhhHhhhhhhhhhhhHHHHHHHhhhHHh
Confidence 9988999999999999999999999988888888777
No 5
>PF10303 DUF2408: Protein of unknown function (DUF2408); InterPro: IPR018810 This entry represents a family of proteins conserved in fungi whose function is unknown.
Probab=63.93 E-value=33 Score=29.63 Aligned_cols=42 Identities=24% Similarity=0.386 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHhc---CCCCCCChHHHHHHHHHHHHHHH
Q 020643 66 LLLLNYCQSIVYYLLRKAK---GLSIEGHPVVQSLVEIRLFLEKI 107 (323)
Q Consensus 66 ~lLLsY~~nL~~ylllK~~---g~si~~hPvv~rLv~~R~~LeKi 107 (323)
.-||.=|.+|+.-+..+.. ..+-.-.|+.++|+.+|.-||++
T Consensus 80 ~~LLd~C~~li~dl~~~~~~~~~~~~~l~~iY~~L~~ik~~LE~L 124 (134)
T PF10303_consen 80 NGLLDDCFDLIEDLLERKGEEIEVDPSLQPIYDQLIDIKNTLENL 124 (134)
T ss_pred HHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHhh
Confidence 3688889999998888777 33333469999999999999885
No 6
>PHA03225 DNA packaging protein UL33; Provisional
Probab=57.98 E-value=20 Score=30.81 Aligned_cols=46 Identities=17% Similarity=0.150 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC----CCCCCCh--HHHHHHHHHHHHHHH
Q 020643 61 LEAKHLLLLNYCQSIVYYLLRKAKG----LSIEGHP--VVQSLVEIRLFLEKI 107 (323)
Q Consensus 61 L~~K~~lLLsY~~nL~~ylllK~~g----~si~~hP--vv~rLv~~R~~LeKi 107 (323)
.++|-+ +||||+.++-++-.+..| .....|- +-.+.-..+.++.|+
T Consensus 62 tDaKLN-yLs~tqrlasfl~h~~~~~~~~~~~C~H~~iL~~K~e~f~~VI~Kf 113 (125)
T PHA03225 62 TDAKLN-YLAHTANLAAALRYDCAGDLDGGRMCAHAELIARRRERFAKILNKF 113 (125)
T ss_pred hHHHHH-HHHHHHHHHHHHHhccccCCCCCCcChhHHHHHHHHHHHHHHHHHH
Confidence 445554 579999999998888333 2334452 234444445555553
No 7
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=55.15 E-value=41 Score=30.30 Aligned_cols=70 Identities=14% Similarity=0.233 Sum_probs=48.0
Q ss_pred hhHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Q 020643 10 ISDERVKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLL 80 (323)
Q Consensus 10 ~~l~~l~kesPEl~~LL~el~~~l~~v~~~v~~l~~~vk~~~~~~~~GislL~~K~~lLLsY~~nL~~yll 80 (323)
.++.-|..+.-.+..-++++-..|.++...|..++..-... ......-.--.+.+..||+|.+-|+-|-.
T Consensus 29 ~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~~~~~~~-~~~~~~~~~~~v~~~eLL~YA~rISk~t~ 98 (188)
T PF10018_consen 29 ARIQQLRAEIEELDEQIRDILKQLKEARKELRTLPDQADEK-LKSIPKAEKRPVDYEELLSYAHRISKFTS 98 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cccccccccCCCCHHHHHHHHHHHHHhcC
Confidence 56677888999999999999999999988888887221111 11111122223457899999999998743
No 8
>KOG3118 consensus Disrupter of silencing SAS10 [Chromatin structure and dynamics]
Probab=54.49 E-value=16 Score=37.97 Aligned_cols=84 Identities=17% Similarity=0.095 Sum_probs=45.2
Q ss_pred hhHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH----hcC
Q 020643 10 ISDERVKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRK----AKG 85 (323)
Q Consensus 10 ~~l~~l~kesPEl~~LL~el~~~l~~v~~~v~~l~~~vk~~~~~~~~GislL~~K~~lLLsY~~nL~~ylllK----~~g 85 (323)
++..++..-.|+|..|.++++.-+- ....+....-+.++.++-.-|-+|++.++.|+-.- -.|
T Consensus 202 ~~d~~le~i~kdla~ls~e~~~~~~-------------~~~~~e~~~~~~~~k~~l~el~s~l~t~~~~l~~~~~~L~~g 268 (517)
T KOG3118|consen 202 DKDTHLEEIVKDLASLSKEEQMLVL-------------YSSEPEIVELLEPLKDLLEELESKLNTYMSYLKELDEELPPG 268 (517)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhh-------------hcccHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 4445555555555555555544211 11111123344555566666666665555443222 112
Q ss_pred ---CCCCCChHHHHHHHHHHHHHH
Q 020643 86 ---LSIEGHPVVQSLVEIRLFLEK 106 (323)
Q Consensus 86 ---~si~~hPvv~rLv~~R~~LeK 106 (323)
..+++||++.-|+..+..|..
T Consensus 269 ee~~~lr~hp~m~~l~~~ke~w~s 292 (517)
T KOG3118|consen 269 EEESLLRSHPNMAVLKVVKEDWLS 292 (517)
T ss_pred cchhhhhcCcchhhhhhhhhhhhh
Confidence 257899999999988777665
No 9
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=45.88 E-value=73 Score=32.30 Aligned_cols=114 Identities=18% Similarity=0.200 Sum_probs=69.0
Q ss_pred chhHHHhhhccHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhcC---CCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Q 020643 9 SISDERVKKEAPQLAALLREMKEGLDKLRSKVQS----LITKVKGN---NYPTVDGISYLEAKHLLLLNYCQSIVYYLLR 81 (323)
Q Consensus 9 ~~~l~~l~kesPEl~~LL~el~~~l~~v~~~v~~----l~~~vk~~---~~~~~~GislL~~K~~lLLsY~~nL~~ylll 81 (323)
-+.+++|.+|+.|+..++++|++.+..+...... |.+..... ......-+..|..-..-|-+|+..+.-+.-.
T Consensus 240 ~e~l~Vl~~Da~El~~V~~el~~~~~~~~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~yl~~~~~~~~~ 319 (412)
T PF04108_consen 240 QEMLEVLENDAQELPDVVKELQERLDEMENNEERTKKLLQSQRDHIRELYNALSEALEELRKFGERLPSYLAAFHDFEER 319 (412)
T ss_pred HHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999988887666 43322110 0011222333332222455555554443222
Q ss_pred Hhc-CCCCC-------------------CChHHHHHHHHHHHHHHHhhHHHhhHHHHHHHh
Q 020643 82 KAK-GLSIE-------------------GHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLT 122 (323)
Q Consensus 82 K~~-g~si~-------------------~hPvv~rLv~~R~~LeKirpLe~kL~yQIdKLl 122 (323)
-.. ..++. -+-++..+.+-|.+-++|+-+-..+.-|+++|.
T Consensus 320 ~~~~~~~i~~~~~~l~~L~~~Y~~F~~aY~~LL~Ev~RRr~~~~k~~~i~~~~~eeL~~l~ 380 (412)
T PF04108_consen 320 WEEEKESIQAYIDELEQLCEFYEGFLSAYDSLLLEVERRRAVRDKMKKIIREANEELDKLR 380 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 00110 123566666767777888888888999999988
No 10
>PF03581 Herpes_UL33: Herpesvirus UL33-like protein; InterPro: IPR005208 This is a family of Herpesvirus proteins including UL33 P10217 from SWISSPROT,UL51 P16792 from SWISSPROT. The proteins in this family are involved in packaging viral DNA.; GO: 0019073 viral DNA genome packaging
Probab=44.84 E-value=51 Score=25.99 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCh--HHHHHHHHHHHHHHH
Q 020643 62 EAKHLLLLNYCQSIVYYLLRKAKGLSIEGHP--VVQSLVEIRLFLEKI 107 (323)
Q Consensus 62 ~~K~~lLLsY~~nL~~ylllK~~g~si~~hP--vv~rLv~~R~~LeKi 107 (323)
.+|-+ +||||+.|+.++-.+..+.....|- +-.+.-..+.++.|+
T Consensus 20 dakLN-~Ln~~q~la~fl~~~~~~~~~C~H~~vl~~K~e~~~~vi~K~ 66 (75)
T PF03581_consen 20 DAKLN-YLNYCQRLASFLRHRHGQGAACEHGEVLERKRERFAQVINKF 66 (75)
T ss_pred HHHHH-HHHHHHHHHHHHHhccCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 34443 5799999999888877755555553 334444555565554
No 11
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=40.78 E-value=3e+02 Score=29.37 Aligned_cols=73 Identities=21% Similarity=0.277 Sum_probs=56.1
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHH----HHHHHHHHHHH----HhhHHHhhHHHHHHHhhh
Q 020643 53 PTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEGHPVVQ----SLVEIRLFLEK----IRPIDRKLQYQIQKLTSV 124 (323)
Q Consensus 53 ~~~~GislL~~K~~lLLsY~~nL~~ylllK~~g~si~~hPvv~----rLv~~R~~LeK----irpLe~kL~yQIdKLl~~ 124 (323)
.-+..+++|+.+ |-+--..|+-|.-+...|.+|..|-|+. .+..+|.++++ +..+++-|.-|+++|=
T Consensus 161 ~~Ge~~~~lEk~---Le~i~~~l~qf~~lt~~Gd~ieA~evl~~~ee~~~~L~~~~e~IP~L~~e~~~~lP~ql~~Lk-- 235 (570)
T COG4477 161 QYGEAAPELEKK---LENIEEELSQFVELTSSGDYIEAREVLEEAEEHMIALRSIMERIPSLLAELQTELPGQLQDLK-- 235 (570)
T ss_pred hhhhhhHHHHHH---HHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH--
Confidence 345667888865 4455678889999999999999887765 57788999998 6777888888999887
Q ss_pred hhcCCC
Q 020643 125 RVGGNA 130 (323)
Q Consensus 125 ~a~~~~ 130 (323)
..++++
T Consensus 236 ~Gyr~m 241 (570)
T COG4477 236 AGYRDM 241 (570)
T ss_pred HHHHHH
Confidence 555443
No 12
>PF15467 SGIII: Secretogranin-3
Probab=37.03 E-value=50 Score=33.33 Aligned_cols=45 Identities=33% Similarity=0.479 Sum_probs=28.3
Q ss_pred ccHHHHHHHHHHHHHHHH-----HHHHHHHHHH----HhhcCCCCCCCCccHHH
Q 020643 18 EAPQLAALLREMKEGLDK-----LRSKVQSLIT----KVKGNNYPTVDGISYLE 62 (323)
Q Consensus 18 esPEl~~LL~el~~~l~~-----v~~~v~~l~~----~vk~~~~~~~~GislL~ 62 (323)
=+|.|-.||+.|..--+. +-..+..|+. .|+-|.+.+.+|+|||+
T Consensus 266 YFPNFy~LLkSldSE~dakEkeTLITIMKTLIDFVKMMVKYGTItPEEGVsYLE 319 (453)
T PF15467_consen 266 YFPNFYALLKSLDSEKDAKEKETLITIMKTLIDFVKMMVKYGTITPEEGVSYLE 319 (453)
T ss_pred hchhHHHHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHhcCcChhhhhHHHH
Confidence 478899999888632111 1112223333 35678899999999887
No 13
>PF12432 DUF3677: Protein of unknown function (DUF3677) ; InterPro: IPR022145 This domain family is found in eukaryotes, and is approximately 80 amino acids in length.
Probab=36.55 E-value=33 Score=27.22 Aligned_cols=42 Identities=21% Similarity=0.207 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHH
Q 020643 63 AKHLLLLNYCQSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFL 104 (323)
Q Consensus 63 ~K~~lLLsY~~nL~~ylllK~~g~si~~hPvv~rLv~~R~~L 104 (323)
+.|.-+.-+.+.+..+++..+.+.+..||.+++.|+++|.--
T Consensus 26 lqn~kl~r~a~elL~~l~~n~~~~~~~D~e~i~~Llkl~lk~ 67 (83)
T PF12432_consen 26 LQNPKLQRPAQELLSSLCYNCDSHSPEDSEVIDNLLKLRLKS 67 (83)
T ss_pred hhccccchHHHHHHHHHHhcccCCchhhHHHHHHHHHHhhcc
Confidence 455566677788877888888889999999999999887543
No 14
>PF07030 DUF1320: Protein of unknown function (DUF1320); InterPro: IPR009752 This entry is represented by the Bacteriophage Mu, Gp36. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=23.79 E-value=2.1e+02 Score=24.14 Aligned_cols=45 Identities=22% Similarity=0.210 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHH
Q 020643 62 EAKHLLLLNYCQSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKI 107 (323)
Q Consensus 62 ~~K~~lLLsY~~nL~~ylllK~~g~si~~hPvv~rLv~~R~~LeKi 107 (323)
..-..+|..+|..|+.|.|....+... .+++..+--....+|++|
T Consensus 57 ~~~p~~L~~~~~dIA~y~L~~~~~~~~-~e~~~~rY~~A~~~L~~i 101 (130)
T PF07030_consen 57 APVPALLKRIACDIARYRLYDRRPSQE-TEPVRERYKDAIKWLEDI 101 (130)
T ss_pred ccccHHHHHHHHHHHHHHHHhcCCccC-cHHHHHHHHHHHHHHHHH
Confidence 333567899999999999877766554 667666655555555544
No 15
>PHA03236 DNA packaging protein UL33; Provisional
Probab=20.19 E-value=2e+02 Score=24.93 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 020643 62 EAKHLLLLNYCQSIVYYLLRKA 83 (323)
Q Consensus 62 ~~K~~lLLsY~~nL~~ylllK~ 83 (323)
+.|-+ +||||+.|+.++-.+.
T Consensus 59 DaKLN-yLs~tqrLasfl~h~~ 79 (127)
T PHA03236 59 DSKLN-YLSFTRRLASVLRHGR 79 (127)
T ss_pred HHHHH-HHHHHHHHHHHHhhcc
Confidence 34433 5789999998887754
Done!