Query 020646
Match_columns 323
No_of_seqs 187 out of 1174
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 06:06:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020646.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020646hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ivx_A Cyclin-T2; transcriptio 100.0 1E-35 3.6E-40 274.9 17.3 173 146-323 2-174 (257)
2 3rgf_B Cyclin-C; protein kinas 100.0 2.6E-35 9E-40 277.6 15.3 181 127-323 4-185 (285)
3 2pk2_A Cyclin-T1, protein TAT; 100.0 2.1E-34 7.3E-39 280.0 12.6 176 143-323 6-181 (358)
4 2i53_A Cyclin K; cell cycle, t 100.0 1.3E-33 4.4E-38 260.4 14.7 171 144-323 10-183 (258)
5 1zp2_A RNA polymerase II holoe 100.0 3.6E-32 1.2E-36 248.6 10.9 160 131-323 2-162 (235)
6 1jkw_A Cyclin H; cell cycle, c 100.0 2.5E-31 8.4E-36 255.0 17.1 163 147-323 9-198 (323)
7 1c9b_A General transcription f 99.9 2E-24 6.7E-29 193.4 12.6 124 177-322 6-129 (207)
8 2cch_B Cyclin A2, cyclin-A; co 99.9 1.1E-22 3.9E-27 188.4 10.3 133 171-322 34-167 (260)
9 3g33_B CCND3 protein; Ser/Thr 99.9 2E-22 6.9E-27 191.8 11.4 142 162-322 57-202 (306)
10 2b9r_A Human cyclin B1; cell c 99.9 6.9E-22 2.3E-26 184.3 14.3 134 170-323 32-166 (269)
11 2w96_A G1/S-specific cyclin-D1 99.9 1.7E-22 5.8E-27 188.3 9.5 137 167-322 48-188 (271)
12 1g3n_C V-cyclin; cyclin-depend 99.9 1.8E-21 6.2E-26 180.0 12.8 136 168-322 43-182 (257)
13 2f2c_A Cyclin homolog, V-cycli 99.8 1.7E-21 5.7E-26 180.0 9.2 137 167-322 43-183 (254)
14 1ais_B TFB TFIIB, protein (tra 99.8 7.7E-21 2.6E-25 169.0 12.3 129 171-322 5-135 (200)
15 1f5q_B Gamma herpesvirus cycli 99.8 1.4E-19 4.8E-24 168.1 13.9 136 166-320 39-178 (252)
16 1w98_B Cyclin E, G1/S-specific 99.8 5.3E-19 1.8E-23 166.1 12.2 119 172-309 46-166 (283)
17 3k7a_M Transcription initiatio 99.7 8.2E-19 2.8E-23 169.4 5.2 125 177-323 127-263 (345)
18 4bbr_M Transcription initiatio 99.5 3.8E-14 1.3E-18 137.1 8.5 124 177-322 127-262 (345)
19 1ais_B TFB TFIIB, protein (tra 98.1 1.3E-05 4.6E-10 70.4 9.4 67 180-246 109-175 (200)
20 1c9b_A General transcription f 97.6 0.00022 7.5E-09 63.0 8.8 67 180-246 103-169 (207)
21 2pmi_B PHO85 cyclin PHO80, ami 97.1 0.0025 8.5E-08 60.3 9.9 103 180-304 78-184 (293)
22 3k7a_M Transcription initiatio 96.1 0.00092 3.1E-08 64.1 0.0 67 180-246 236-302 (345)
23 4bbr_M Transcription initiatio 96.0 0.0011 3.8E-08 63.7 0.0 69 179-247 235-303 (345)
24 1zp2_A RNA polymerase II holoe 94.9 0.052 1.8E-06 48.6 6.9 56 180-235 135-190 (235)
25 3rgf_B Cyclin-C; protein kinas 93.6 0.061 2.1E-06 49.8 4.7 56 181-236 159-214 (285)
26 2i53_A Cyclin K; cell cycle, t 92.9 0.15 5.1E-06 46.0 6.1 56 180-235 152-211 (258)
27 2ivx_A Cyclin-T2; transcriptio 91.4 0.35 1.2E-05 43.6 6.6 56 180-235 147-203 (257)
28 2b9r_A Human cyclin B1; cell c 91.1 0.26 8.9E-06 45.0 5.5 57 180-236 139-195 (269)
29 3m03_A ORC6, origin recognitio 88.5 0.95 3.2E-05 35.8 6.0 61 183-244 6-71 (95)
30 2cch_B Cyclin A2, cyclin-A; co 87.2 0.51 1.7E-05 42.8 4.4 58 179-236 139-198 (260)
31 3h4c_A Transcription factor TF 87.0 1.9 6.5E-05 38.9 7.7 65 179-243 15-82 (260)
32 2pk2_A Cyclin-T1, protein TAT; 86.7 0.42 1.4E-05 45.8 3.6 55 181-235 155-210 (358)
33 2f2c_A Cyclin homolog, V-cycli 86.1 2.3 8E-05 38.2 8.1 54 180-233 153-210 (254)
34 1g3n_C V-cyclin; cyclin-depend 84.2 1.3 4.3E-05 40.0 5.4 57 179-235 151-211 (257)
35 1jkw_A Cyclin H; cell cycle, c 83.4 1.4 4.9E-05 41.4 5.6 54 182-235 170-226 (323)
36 2w96_A G1/S-specific cyclin-D1 82.6 1.6 5.5E-05 39.6 5.5 55 179-233 157-215 (271)
37 4ell_A Retinoblastoma-associat 78.9 7.6 0.00026 38.1 9.1 66 179-247 282-353 (411)
38 2r7g_A PP110, retinoblastoma-a 77.4 6 0.00021 38.0 7.7 69 179-247 218-289 (347)
39 3g33_B CCND3 protein; Ser/Thr 76.8 2.4 8.3E-05 39.5 4.7 54 181-234 173-230 (306)
40 2qdj_A Retinoblastoma-associat 74.3 7.7 0.00026 36.5 7.4 63 184-246 7-73 (304)
41 4elj_A Retinoblastoma-associat 67.8 14 0.00047 38.4 8.2 70 179-248 527-599 (656)
42 4elj_A Retinoblastoma-associat 60.4 19 0.00064 37.4 7.5 63 183-246 8-75 (656)
43 1w98_B Cyclin E, G1/S-specific 59.1 16 0.00054 33.3 6.2 52 180-231 152-214 (283)
44 2ljx_A Protein E6; metal bindi 27.8 0.67 2.3E-05 35.7 -7.3 54 182-235 13-78 (84)
45 1f5q_B Gamma herpesvirus cycli 26.3 2.7E+02 0.0091 24.7 8.6 53 179-231 149-205 (252)
46 3bya_B Glutamate [NMDA] recept 20.1 14 0.00047 22.0 -0.9 11 81-91 14-24 (26)
No 1
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=100.00 E-value=1e-35 Score=274.87 Aligned_cols=173 Identities=30% Similarity=0.470 Sum_probs=156.6
Q ss_pred CCCccccHHHHHHhCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhccCccccchhHHHHHHH
Q 020646 146 DEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAA 225 (323)
Q Consensus 146 ~~~w~fT~eEl~~~tPS~~~GIs~e~E~~lR~~~~~fI~~lg~~L~Lpq~tiaTA~vyfhRFy~r~S~~~~d~~lVAaAC 225 (323)
.++|+||+|||+ .+||+.+||+++.|..+|..+++||.++|.+|+|++.|+++|++|||||+.++++.++++++||+||
T Consensus 2 ~~~w~~t~e~l~-~~ps~~~g~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~ac 80 (257)
T 2ivx_A 2 SSRWFFTREQLE-NTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTA 80 (257)
T ss_dssp CGGGSCCHHHHH-SCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHH
T ss_pred CCCeeecHHHHH-hChHhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHH
Confidence 357999999996 7999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCCChHHHHHHHHHHhhhhchhhhcccCChhhhHHhHHHHHHHHHHHHHHcCccceecCcHHHHHHHHHHc
Q 020646 226 LFLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKL 305 (323)
Q Consensus 226 LFLAcKvEE~~rkl~dVi~v~~~l~~k~~~~~~~y~~~~~~y~~~r~~IL~~E~~IL~tL~FDL~V~~P~~~L~~~l~~L 305 (323)
||||||+||+++++++++.++..+.++.... .....+.|+..+++|+.+|+.||++|+|+|.+.|||.||.+|++.+
T Consensus 81 L~lA~K~EE~p~~l~d~~~~~~~~~~~~~~~---~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l 157 (257)
T 2ivx_A 81 LFLAAKVEEQARKLEHVIKVAHACLHPLEPL---LDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLV 157 (257)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHCTTSCC---CCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHT
T ss_pred HHHHhccccCCcCHHHHHHHHHHHhccCCCC---CCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHh
Confidence 9999999999999999999887766543211 1122356777799999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHhhCC
Q 020646 306 GLSQTVLVNLALNLVSEG 323 (323)
Q Consensus 306 ~ls~~~l~q~Aw~~lND~ 323 (323)
+.+++ +.+.||.|++|+
T Consensus 158 ~~~~~-~~~~A~~~~~~s 174 (257)
T 2ivx_A 158 RASKD-LAQTSYFMATNS 174 (257)
T ss_dssp TCCHH-HHHHHHHHHHHH
T ss_pred CCCcH-HHHHHHHHHHhh
Confidence 99876 899999999874
No 2
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.6e-35 Score=277.58 Aligned_cols=181 Identities=25% Similarity=0.342 Sum_probs=157.6
Q ss_pred ccccccccccccccCCCCCCCCccccHHHHHHhCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 020646 127 NIEVSTSMSCKRDRSKLEDDEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHR 206 (323)
Q Consensus 127 ~~~~~~s~~~~~~~~~~~~~~~w~fT~eEl~~~tPS~~~GIs~e~E~~lR~~~~~fI~~lg~~L~Lpq~tiaTA~vyfhR 206 (323)
.++.|+|++++ +|+||++||+...+.+.+|++.++|..+|..+++||.++|.+|+||+.|++||++||||
T Consensus 4 ~~~~w~Ss~~~----------~Wlft~~el~~~~~~~~~~l~~~~e~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~R 73 (285)
T 3rgf_B 4 AGNFWQSSHYL----------QWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKR 73 (285)
T ss_dssp TTCGGGSHHHH----------HHSCCHHHHHHHHTTGGGTSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cchhhcccccC----------CcCcCHHHHHHhhhcccccCCHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 35789998886 49999999986545579999999999999999999999999999999999999999999
Q ss_pred HhccCccccchhHHHHHHHHHHhhccCCCCCC-hHHHHHHHHHHhhhhchhhhcccCChhhhHHhHHHHHHHHHHHHHHc
Q 020646 207 FFVRRSHACHDRFIIATAALFLAAKSEETPRP-LNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTL 285 (323)
Q Consensus 207 Fy~r~S~~~~d~~lVAaACLFLAcKvEE~~rk-l~dVi~v~~~l~~k~~~~~~~y~~~~~~y~~~r~~IL~~E~~IL~tL 285 (323)
||+++++.++++++||+||||||||+||++++ +++|+.++..+.+... .+..+ +.|+..+++|+.+|+.||++|
T Consensus 74 F~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~----~~~~~-~~~~~~~~~Il~~E~~iL~~L 148 (285)
T 3rgf_B 74 FYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRF----SYAFP-KEFPYRMNHILECEFYLLELM 148 (285)
T ss_dssp HHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHC----TTTCC-SCCCCCHHHHHHHHHHHHHHT
T ss_pred HHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHcccc----cccCc-hhhHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999984 8899988766543211 11111 223346899999999999999
Q ss_pred CccceecCcHHHHHHHHHHcCCChHHHHHHHHHHhhCC
Q 020646 286 NFELNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEG 323 (323)
Q Consensus 286 ~FDL~V~~P~~~L~~~l~~L~ls~~~l~q~Aw~~lND~ 323 (323)
+|+|.+.|||.||.+|++.++.++. +.+.||.|+||+
T Consensus 149 ~f~l~v~~P~~fL~~~~~~l~~~~~-~~~~A~~~l~~s 185 (285)
T 3rgf_B 149 DCCLIVYHPYRPLLQYVQDMGQEDM-LLPLAWRIVNDT 185 (285)
T ss_dssp TTCCCCCCSHHHHHHHHHHHTCHHH-HHHHHHHHHHHH
T ss_pred CCCeEeCChHHHHHHHHHHhCCCHH-HHHHHHHHHHHH
Confidence 9999999999999999999998665 999999999984
No 3
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=100.00 E-value=2.1e-34 Score=280.03 Aligned_cols=176 Identities=30% Similarity=0.451 Sum_probs=157.0
Q ss_pred CCCCCCccccHHHHHHhCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhccCccccchhHHHH
Q 020646 143 LEDDEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIA 222 (323)
Q Consensus 143 ~~~~~~w~fT~eEl~~~tPS~~~GIs~e~E~~lR~~~~~fI~~lg~~L~Lpq~tiaTA~vyfhRFy~r~S~~~~d~~lVA 222 (323)
....++|+||++||+ .+||+.+||+++.|..+|..+++||.++|.+|+|++.|+++|++||||||+++++..+++++||
T Consensus 6 ~~~~~~wlft~eeL~-~~pS~~dgi~~~~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva 84 (358)
T 2pk2_A 6 KNNNKRWYFTREQLE-NSPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVA 84 (358)
T ss_dssp --CCSSSSCCSHHHH-TCTTHHHHCCHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHH
T ss_pred CCCCCCceeCHHHHH-hChhhhcCCChHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHH
Confidence 344678999999996 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCCCChHHHHHHHHHHhhhhchhhhcccCChhhhHHhHHHHHHHHHHHHHHcCccceecCcHHHHHHHH
Q 020646 223 TAALFLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSIL 302 (323)
Q Consensus 223 aACLFLAcKvEE~~rkl~dVi~v~~~l~~k~~~~~~~y~~~~~~y~~~r~~IL~~E~~IL~tL~FDL~V~~P~~~L~~~l 302 (323)
+||||||||+||+++++++|+.+++.+.++.... .....+.|+..+++|+.+|+.||++|+|+|.+.|||.||..|+
T Consensus 85 ~acLfLA~K~EE~p~~l~d~v~v~~~~~~~~~~~---~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~ 161 (358)
T 2pk2_A 85 PAALFLAAKVEEQPKKLEHVIKVAHTCLHPQESL---PDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCT 161 (358)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHTTHHHHHCSSSCC---CCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHH
T ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHhcccccc---ccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHH
Confidence 9999999999999999999998887666543211 1122356777789999999999999999999999999999999
Q ss_pred HHcCCChHHHHHHHHHHhhCC
Q 020646 303 NKLGLSQTVLVNLALNLVSEG 323 (323)
Q Consensus 303 ~~L~ls~~~l~q~Aw~~lND~ 323 (323)
+.++.+.+ +.++||.|++|+
T Consensus 162 ~~l~~~~~-l~~~A~~ll~~s 181 (358)
T 2pk2_A 162 QLVRASKD-LAQTSYFMATNS 181 (358)
T ss_dssp HHTTCCHH-HHHHHHHHHHHH
T ss_pred HHcCCCHH-HHHHHHHHHHHH
Confidence 99998876 999999999874
No 4
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1.3e-33 Score=260.43 Aligned_cols=171 Identities=27% Similarity=0.512 Sum_probs=152.3
Q ss_pred CCCCCccccHHHHHHhCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhccCccccchhHHHHH
Q 020646 144 EDDEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIAT 223 (323)
Q Consensus 144 ~~~~~w~fT~eEl~~~tPS~~~GIs~e~E~~lR~~~~~fI~~lg~~L~Lpq~tiaTA~vyfhRFy~r~S~~~~d~~lVAa 223 (323)
+...+|+||++||. .+||+.+||+++.|..+|..++.||.++|.+|+|++.|+++|++|||||+.++++.++++++||+
T Consensus 10 ~~~~~w~~~~~el~-~~ps~~~~~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~ 88 (258)
T 2i53_A 10 HTKPCWYWDKKDLA-HTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGA 88 (258)
T ss_dssp SCSSSCCCCGGGGG-GCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHH
T ss_pred hhccCCccCHHHHH-hCchhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHH
Confidence 34678999999995 69999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCChHHHHHHHHHHhhhhchhhhcccCChhhhHHhHHHHHHHHHHHHHHcCccceecCcHHHHHHHHH
Q 020646 224 AALFLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILN 303 (323)
Q Consensus 224 ACLFLAcKvEE~~rkl~dVi~v~~~l~~k~~~~~~~y~~~~~~y~~~r~~IL~~E~~IL~tL~FDL~V~~P~~~L~~~l~ 303 (323)
||||||||+||+++++++++.++..++..+.+.. ..+..+++|+.+|+.||++|+|+|.+.+|+.||.+|++
T Consensus 89 acL~lA~K~eE~~~~l~d~~~~~~~~~~~~~~~~--------~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~ 160 (258)
T 2i53_A 89 CCLFLAGKVEETPKKCKDIIKTARSLLNDVQFGQ--------FGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAK 160 (258)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHSCHHHHGG--------GCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHccccccccHHHHHHHHHHHhchhhhhh--------hhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHH
Confidence 9999999999999999999998765543322110 00124789999999999999999999999999999999
Q ss_pred HcCCChH---HHHHHHHHHhhCC
Q 020646 304 KLGLSQT---VLVNLALNLVSEG 323 (323)
Q Consensus 304 ~L~ls~~---~l~q~Aw~~lND~ 323 (323)
.++.+.+ .+.+.||.++||+
T Consensus 161 ~l~~~~~~~~~~~~~A~~l~~~s 183 (258)
T 2i53_A 161 QLKGDKNKIQKLVQMAWTFVNDS 183 (258)
T ss_dssp TBCSCHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCcchHHHHHHHHHHHHHHH
Confidence 9999863 5899999999974
No 5
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.97 E-value=3.6e-32 Score=248.58 Aligned_cols=160 Identities=23% Similarity=0.356 Sum_probs=140.6
Q ss_pred ccccccccccCCCCCCCCccccHHHHHHhCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcc
Q 020646 131 STSMSCKRDRSKLEDDEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVR 210 (323)
Q Consensus 131 ~~s~~~~~~~~~~~~~~~w~fT~eEl~~~tPS~~~GIs~e~E~~lR~~~~~fI~~lg~~L~Lpq~tiaTA~vyfhRFy~r 210 (323)
|+|++++ +|+||++||+ .+|+..++ + |..+++||.++|.+|+||+.|+++|++||||||.+
T Consensus 2 ~~Ss~~~----------~w~ft~~~l~-~~~~~~~~-----~---R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~ 62 (235)
T 1zp2_A 2 WASSQLT----------QLFLSTDLES-LEPTCLSK-----D---TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLK 62 (235)
T ss_dssp CCCGGGT----------GGGSCSSCTT-SSCCCSCH-----H---HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CccCCCC----------CCccCHHHHH-HCCcchhH-----H---HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 6776664 5999999997 56766543 2 89999999999999999999999999999999999
Q ss_pred Ccccc-chhHHHHHHHHHHhhccCCCCCChHHHHHHHHHHhhhhchhhhcccCChhhhHHhHHHHHHHHHHHHHHcCccc
Q 020646 211 RSHAC-HDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFEL 289 (323)
Q Consensus 211 ~S~~~-~d~~lVAaACLFLAcKvEE~~rkl~dVi~v~~~l~~k~~~~~~~y~~~~~~y~~~r~~IL~~E~~IL~tL~FDL 289 (323)
+++.+ +++++||+||||||||+||+++++++++.++..+.. +.+...+++|+.+|+.||++|+|+|
T Consensus 63 ~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~-------------~~~~~~~~~I~~~E~~iL~~L~f~l 129 (235)
T 1zp2_A 63 KNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWS-------------LKVKLSRSNISEIEFEIISVLDAFL 129 (235)
T ss_dssp CCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCC-------------CSSCCCHHHHHHHHHHHHHHTTTCC
T ss_pred cccccccCHHHHHHHHHHHHhccccCcccHHHHHHHHHHHcc-------------chhhccHHHHHHHHHHHHHHCCCcE
Confidence 99999 999999999999999999999999999987654321 0122357899999999999999999
Q ss_pred eecCcHHHHHHHHHHcCCChHHHHHHHHHHhhCC
Q 020646 290 NVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEG 323 (323)
Q Consensus 290 ~V~~P~~~L~~~l~~L~ls~~~l~q~Aw~~lND~ 323 (323)
.+.+|+.||.+|+++++++.+ +.+.||.|+||+
T Consensus 130 ~~~~P~~~l~~~~~~~~~~~~-~~~~A~~~l~~s 162 (235)
T 1zp2_A 130 IVHHPYTSLEQAFHDGIINQK-QLEFAWSIVNDS 162 (235)
T ss_dssp CCCCTHHHHHHHHHTTSSCHH-HHHHHHHHHHHH
T ss_pred EecChHHHHHHHHHHcCCCHH-HHHHHHHHHHHH
Confidence 999999999999999999876 899999999984
No 6
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.97 E-value=2.5e-31 Score=254.95 Aligned_cols=163 Identities=23% Similarity=0.300 Sum_probs=139.9
Q ss_pred CCccccH-HHHHHh------------------CCCCcCCCCHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHH
Q 020646 147 EPVFMSR-DEIERF------------------SPSRKDGIDALRETHLRYSYCAFIQNLGLRLE--LPQTTIGTAMVLCH 205 (323)
Q Consensus 147 ~~w~fT~-eEl~~~------------------tPS~~~GIs~e~E~~lR~~~~~fI~~lg~~L~--Lpq~tiaTA~vyfh 205 (323)
..|+||. ++|... .++..+||++++|+.+|..++.||+++|.+|+ ||+.|++||++|||
T Consensus 9 ~~W~f~~~~~L~~~r~~~n~~~~~~~~~~~~~~~~~~~~lt~eeE~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~ 88 (323)
T 1jkw_A 9 RHWTFSSEEQLARLRADANRKFRCKAVANGKVLPNDPVFLEPHEEMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFK 88 (323)
T ss_dssp --CCCSCHHHHHHHHHHHHHHHHHHHHHTSSSCTTCTTSCCHHHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3599995 777532 25789999999999999999999999999999 99999999999999
Q ss_pred HHhccCccccchhHHHHHHHHHHhhccCCCCCChHHHHHHHHHHhhhhchhhhcccCChhhhHHhHHHHHHHHHHHHHHc
Q 020646 206 RFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTL 285 (323)
Q Consensus 206 RFy~r~S~~~~d~~lVAaACLFLAcKvEE~~rkl~dVi~v~~~l~~k~~~~~~~y~~~~~~y~~~r~~IL~~E~~IL~tL 285 (323)
|||+++++.++++++||+||||||||+||+++++++++.+.. . ........+++|+.+|+.||++|
T Consensus 89 RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~~~-----~---------~p~~~~~~~~~Il~~E~~iL~~L 154 (323)
T 1jkw_A 89 RFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLR-----E---------SPLGQEKALEQILEYELLLIQQL 154 (323)
T ss_dssp HHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGSS-----S---------CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHHhc-----c---------ChhhhHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999875321 0 01112246899999999999999
Q ss_pred CccceecCcHHHHHHHHHHc-----CCC-hHHHHHHHHHHhhCC
Q 020646 286 NFELNVQHPYDPLTSILNKL-----GLS-QTVLVNLALNLVSEG 323 (323)
Q Consensus 286 ~FDL~V~~P~~~L~~~l~~L-----~ls-~~~l~q~Aw~~lND~ 323 (323)
+|+|.+.|||.+|..|+..+ ++. ...+.+.||.|+||+
T Consensus 155 ~f~l~v~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~s 198 (323)
T 1jkw_A 155 NFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRI 198 (323)
T ss_dssp TTCCCCCCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHH
T ss_pred CCcEEcCChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999876 343 245899999999984
No 7
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.91 E-value=2e-24 Score=193.39 Aligned_cols=124 Identities=18% Similarity=0.284 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHhhccCCCCCChHHHHHHHHHHhhhhchh
Q 020646 177 YSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNIT 256 (323)
Q Consensus 177 ~~~~~fI~~lg~~L~Lpq~tiaTA~vyfhRFy~r~S~~~~d~~lVAaACLFLAcKvEE~~rkl~dVi~v~~~l~~k~~~~ 256 (323)
..++.+|+++|.+|+||+.|++||++|||||+..++++++++..|++||||||||.||.|+++++|+.++.
T Consensus 6 ~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~~l~di~~~~~--------- 76 (207)
T 1c9b_A 6 MNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR--------- 76 (207)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHTSS---------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHC---------
Confidence 45999999999999999999999999999999999999999999999999999999999999999987642
Q ss_pred hhcccCChhhhHHhHHHHHHHHHHHHHHcCccceecCcHHHHHHHHHHcCCChHHHHHHHHHHhhC
Q 020646 257 LLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSE 322 (323)
Q Consensus 257 ~~~y~~~~~~y~~~r~~IL~~E~~IL~tL~FDL~V~~P~~~L~~~l~~L~ls~~~l~q~Aw~~lND 322 (323)
-.+++|..+|+.||++|+|++.+.+|+.+|.+|++.|+++++ +.+.||.++++
T Consensus 77 ------------~~~~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~~-~~~~A~~i~~~ 129 (207)
T 1c9b_A 77 ------------ISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQ-VQMAATHIARK 129 (207)
T ss_dssp ------------SCHHHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCHH-HHHHHHHHHHH
T ss_pred ------------CCHHHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCHH-HHHHHHHHHHH
Confidence 025678899999999999999999999999999999999886 88999999886
No 8
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=99.87 E-value=1.1e-22 Score=188.42 Aligned_cols=133 Identities=21% Similarity=0.287 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHhhccCCC-CCChHHHHHHHHHH
Q 020646 171 RETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET-PRPLNDVLRASSEL 249 (323)
Q Consensus 171 ~E~~lR~~~~~fI~~lg~~L~Lpq~tiaTA~vyfhRFy~r~S~~~~d~~lVAaACLFLAcKvEE~-~rkl~dVi~v~~~l 249 (323)
.....|..+++||.+++..++|++.|+++|+.|++||+.+.++...+.++||+||||||||.||. ++++++++.++..
T Consensus 34 i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~- 112 (260)
T 2cch_B 34 ITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDD- 112 (260)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTS-
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcC-
Confidence 34567999999999999999999999999999999999999999999999999999999999998 8999999875321
Q ss_pred hhhhchhhhcccCChhhhHHhHHHHHHHHHHHHHHcCccceecCcHHHHHHHHHHcCCChHHHHHHHHHHhhC
Q 020646 250 YHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSE 322 (323)
Q Consensus 250 ~~k~~~~~~~y~~~~~~y~~~r~~IL~~E~~IL~tL~FDL~V~~P~~~L~~~l~~L~ls~~~l~q~Aw~~lND 322 (323)
.| .+++|+.+|+.||++|+|++.+.+|+.||..|++.++.+...+.+.||.++++
T Consensus 113 ----------------~~--~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~a~~l~e~ 167 (260)
T 2cch_B 113 ----------------TY--TKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGEL 167 (260)
T ss_dssp ----------------SS--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCCHHHHHHHHHHHHH
T ss_pred ----------------Cc--CHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 12 47899999999999999999999999999999999998764588999998875
No 9
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=99.87 E-value=2e-22 Score=191.76 Aligned_cols=142 Identities=16% Similarity=0.198 Sum_probs=124.4
Q ss_pred CCcCCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHhhccCCC-CCChH
Q 020646 162 SRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET-PRPLN 240 (323)
Q Consensus 162 S~~~GIs~e~E~~lR~~~~~fI~~lg~~L~Lpq~tiaTA~vyfhRFy~r~S~~~~d~~lVAaACLFLAcKvEE~-~rkl~ 240 (323)
+-.+|++++.+...|...+.||.++|.+++|++.|+++|+.||+||+.++++...+.++||+||||||||+||. +.+++
T Consensus 57 ~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~ 136 (306)
T 3g33_B 57 SYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIE 136 (306)
T ss_dssp CCTTTSTTTCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTT
T ss_pred HHHhhcCccCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHH
Confidence 34566777777789999999999999999999999999999999999999999999999999999999999986 66888
Q ss_pred HHHHHHHHHhhhhchhhhcccCChhhhHHhHHHHHHHHHHHHHHcCccceecCcHHHHHHHHHHcCCChH---HHHHHHH
Q 020646 241 DVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQT---VLVNLAL 317 (323)
Q Consensus 241 dVi~v~~~l~~k~~~~~~~y~~~~~~y~~~r~~IL~~E~~IL~tL~FDL~V~~P~~~L~~~l~~L~ls~~---~l~q~Aw 317 (323)
+++.++.. .| .+++|+.||+.||++|+|+|.+.+|+.||..|++.++.+.+ .+.+.||
T Consensus 137 ~l~~~~~~-----------------~~--~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~~~~~~~~a~ 197 (306)
T 3g33_B 137 KLCIYTDH-----------------AV--SPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVKKHAQ 197 (306)
T ss_dssp HHHHHTTT-----------------SS--CHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSCCTTTHHHHHHHHH
T ss_pred HHHHHhcc-----------------Cc--cHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChhHHHHHHHHHH
Confidence 88765321 12 47899999999999999999999999999999999988643 4678899
Q ss_pred HHhhC
Q 020646 318 NLVSE 322 (323)
Q Consensus 318 ~~lND 322 (323)
.|+++
T Consensus 198 ~~l~l 202 (306)
T 3g33_B 198 TFLAL 202 (306)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
No 10
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=99.87 E-value=6.9e-22 Score=184.31 Aligned_cols=134 Identities=20% Similarity=0.249 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHhhccCCC-CCChHHHHHHHHH
Q 020646 170 LRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET-PRPLNDVLRASSE 248 (323)
Q Consensus 170 e~E~~lR~~~~~fI~~lg~~L~Lpq~tiaTA~vyfhRFy~r~S~~~~d~~lVAaACLFLAcKvEE~-~rkl~dVi~v~~~ 248 (323)
+.....|...++||.++|.+++|++.|+.+|+.||+||+...++...+.++||+||||||||.||. ++++++++.++..
T Consensus 32 ~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~ 111 (269)
T 2b9r_A 32 EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDN 111 (269)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcC
Confidence 344578999999999999999999999999999999999999999999999999999999999998 7889998875321
Q ss_pred HhhhhchhhhcccCChhhhHHhHHHHHHHHHHHHHHcCccceecCcHHHHHHHHHHcCCChHHHHHHHHHHhhCC
Q 020646 249 LYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEG 323 (323)
Q Consensus 249 l~~k~~~~~~~y~~~~~~y~~~r~~IL~~E~~IL~tL~FDL~V~~P~~~L~~~l~~L~ls~~~l~q~Aw~~lND~ 323 (323)
.| .+++|+.+|+.||++|+|++.+.+|+.||..+++.++.+.. +.+.||.+++++
T Consensus 112 -----------------~~--~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~~-~~~~a~~l~e~s 166 (269)
T 2b9r_A 112 -----------------TY--TKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVDVE-QHTLAKYLMELT 166 (269)
T ss_dssp -----------------SS--CHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCCHH-HHHHHHHHHHHG
T ss_pred -----------------CC--CHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCCHH-HHHHHHHHHHHH
Confidence 12 47899999999999999999999999999999999998775 889999998763
No 11
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=99.87 E-value=1.7e-22 Score=188.29 Aligned_cols=137 Identities=15% Similarity=0.216 Sum_probs=120.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHhhccCCC-CCChHHHHHH
Q 020646 167 IDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET-PRPLNDVLRA 245 (323)
Q Consensus 167 Is~e~E~~lR~~~~~fI~~lg~~L~Lpq~tiaTA~vyfhRFy~r~S~~~~d~~lVAaACLFLAcKvEE~-~rkl~dVi~v 245 (323)
++.+.....|...++||.+++.++++++.|+++|+.|++||+.+.++...+.++||+||||||||.||. |+++++++.+
T Consensus 48 ~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~ 127 (271)
T 2w96_A 48 VQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIY 127 (271)
T ss_dssp TCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 333445578999999999999999999999999999999999999999999999999999999999998 8999998765
Q ss_pred HHHHhhhhchhhhcccCChhhhHHhHHHHHHHHHHHHHHcCccceecCcHHHHHHHHHHcCCChHH---HHHHHHHHhhC
Q 020646 246 SSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTV---LVNLALNLVSE 322 (323)
Q Consensus 246 ~~~l~~k~~~~~~~y~~~~~~y~~~r~~IL~~E~~IL~tL~FDL~V~~P~~~L~~~l~~L~ls~~~---l~q~Aw~~lND 322 (323)
+.. .| .+++|+.+|+.||++|+|++.+.+|+.||..|++.++.+.+. +.+.||.|+++
T Consensus 128 ~~~-----------------~~--~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~ 188 (271)
T 2w96_A 128 TDN-----------------SI--RPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFVAL 188 (271)
T ss_dssp TTT-----------------SS--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH
T ss_pred hcC-----------------CC--CHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 321 12 578999999999999999999999999999999999997652 45789998875
No 12
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=99.86 E-value=1.8e-21 Score=180.01 Aligned_cols=136 Identities=17% Similarity=0.212 Sum_probs=119.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHhhccCCC-CCChHHHHHHH
Q 020646 168 DALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET-PRPLNDVLRAS 246 (323)
Q Consensus 168 s~e~E~~lR~~~~~fI~~lg~~L~Lpq~tiaTA~vyfhRFy~r~S~~~~d~~lVAaACLFLAcKvEE~-~rkl~dVi~v~ 246 (323)
+++.....|...++||.+++..++|++.|+++|+.|++||+.++++...+.++||+||||||||.||. ++++++++.++
T Consensus 43 q~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~ 122 (257)
T 1g3n_C 43 QQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAA 122 (257)
T ss_dssp TSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHT
T ss_pred CccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHH
Confidence 34445678999999999999999999999999999999999999999999999999999999999997 88999987653
Q ss_pred HHHhhhhchhhhcccCChhhhHHhHHHHHHHHHHHHHHcCccceecCcHHHHHHHHHHcCCChH---HHHHHHHHHhhC
Q 020646 247 SELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQT---VLVNLALNLVSE 322 (323)
Q Consensus 247 ~~l~~k~~~~~~~y~~~~~~y~~~r~~IL~~E~~IL~tL~FDL~V~~P~~~L~~~l~~L~ls~~---~l~q~Aw~~lND 322 (323)
.. .| .+++|+.+|+.||++|+|++.+.+|+.||..|++.++.+.+ .+.+.||.++++
T Consensus 123 ~~-----------------~~--~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~ 182 (257)
T 1g3n_C 123 AD-----------------SF--SRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGSQHLDFWHHEVNTLITK 182 (257)
T ss_dssp TT-----------------CS--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHH
T ss_pred CC-----------------CC--CHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHH
Confidence 21 12 47899999999999999999999999999999999998654 356789988875
No 13
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=99.85 E-value=1.7e-21 Score=179.95 Aligned_cols=137 Identities=17% Similarity=0.243 Sum_probs=119.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHhhccCCC-CCChHHHHHH
Q 020646 167 IDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET-PRPLNDVLRA 245 (323)
Q Consensus 167 Is~e~E~~lR~~~~~fI~~lg~~L~Lpq~tiaTA~vyfhRFy~r~S~~~~d~~lVAaACLFLAcKvEE~-~rkl~dVi~v 245 (323)
.+++.....|...++||.+++..++|++.|+.+|+.|++||+.++++...+.+++|+||||||||.||. ++++++++.+
T Consensus 43 ~q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~ 122 (254)
T 2f2c_A 43 IQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYL 122 (254)
T ss_dssp TCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTT
T ss_pred cCccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHH
Confidence 444556678999999999999999999999999999999999999999999999999999999999995 8888887654
Q ss_pred HHHHhhhhchhhhcccCChhhhHHhHHHHHHHHHHHHHHcCccceecCcHHHHHHHHHHcCCChH---HHHHHHHHHhhC
Q 020646 246 SSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQT---VLVNLALNLVSE 322 (323)
Q Consensus 246 ~~~l~~k~~~~~~~y~~~~~~y~~~r~~IL~~E~~IL~tL~FDL~V~~P~~~L~~~l~~L~ls~~---~l~q~Aw~~lND 322 (323)
+.. .| .+++|+.+|+.||++|+|++.+.+|+.||..|++.++.+.+ .+.+.||.++++
T Consensus 123 ~~~-----------------~~--~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~ 183 (254)
T 2f2c_A 123 SCD-----------------CF--TNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPEDLWPQLYEAASTTICK 183 (254)
T ss_dssp C--------------------C--CHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred hCC-----------------CC--CHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHH
Confidence 211 12 47899999999999999999999999999999999998765 246789988864
No 14
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.84 E-value=7.7e-21 Score=168.96 Aligned_cols=129 Identities=18% Similarity=0.250 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHhhccCCCCCChHHHHHHHHHHh
Q 020646 171 RETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELY 250 (323)
Q Consensus 171 ~E~~lR~~~~~fI~~lg~~L~Lpq~tiaTA~vyfhRFy~r~S~~~~d~~lVAaACLFLAcKvEE~~rkl~dVi~v~~~l~ 250 (323)
.|+.++ .++.+|.++|.+|+||+.|+.+|+.||+||+..+.+++.++..||+||||+|||.|+.|+.++||+.++.
T Consensus 5 ~er~l~-~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~~--- 80 (200)
T 1ais_B 5 AERNLA-FALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIAR--- 80 (200)
T ss_dssp ---CHH-HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTT---
T ss_pred HHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHC---
Confidence 455555 5999999999999999999999999999999999999999999999999999999999999999988642
Q ss_pred hhhchhhhcccCChhhhHHhHHHHHHHHHHHHHHcCcccee--cCcHHHHHHHHHHcCCChHHHHHHHHHHhhC
Q 020646 251 HKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNV--QHPYDPLTSILNKLGLSQTVLVNLALNLVSE 322 (323)
Q Consensus 251 ~k~~~~~~~y~~~~~~y~~~r~~IL~~E~~IL~tL~FDL~V--~~P~~~L~~~l~~L~ls~~~l~q~Aw~~lND 322 (323)
-.+++|..+|+.|++.|||++.+ .+|+.||.+|+..|+++++ +.+.||.++++
T Consensus 81 ------------------v~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~~-v~~~A~~i~~~ 135 (200)
T 1ais_B 81 ------------------VDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSEK-VRRRAIEILDE 135 (200)
T ss_dssp ------------------SCHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCHH-HHHHHHHHHHH
T ss_pred ------------------CCHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCHH-HHHHHHHHHHH
Confidence 03568999999999999999999 9999999999999999986 89999999986
No 15
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=99.81 E-value=1.4e-19 Score=168.08 Aligned_cols=136 Identities=15% Similarity=0.143 Sum_probs=117.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHhhccCCC-CCChHHHHH
Q 020646 166 GIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET-PRPLNDVLR 244 (323)
Q Consensus 166 GIs~e~E~~lR~~~~~fI~~lg~~L~Lpq~tiaTA~vyfhRFy~r~S~~~~d~~lVAaACLFLAcKvEE~-~rkl~dVi~ 244 (323)
+.+++.....|...++||.+++..++|.+.|+.+|+.|++||+.++++...+.++||+||||||||.||. +.++++++.
T Consensus 39 ~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~ 118 (252)
T 1f5q_B 39 NVDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAY 118 (252)
T ss_dssp SHHHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 3445556688999999999999999999999999999999999999999999999999999999999996 677888776
Q ss_pred HHHHHhhhhchhhhcccCChhhhHHhHHHHHHHHHHHHHHcCccceecCcHHHHHHHHHHcCCChH---HHHHHHHHHh
Q 020646 245 ASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQT---VLVNLALNLV 320 (323)
Q Consensus 245 v~~~l~~k~~~~~~~y~~~~~~y~~~r~~IL~~E~~IL~tL~FDL~V~~P~~~L~~~l~~L~ls~~---~l~q~Aw~~l 320 (323)
.+.. .| .+++|+.||+.||++|+|++.+.+|+.||..|++.++.+.+ .+.+.|+.++
T Consensus 119 ~~~~-----------------~y--t~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~~~~~~~~~~~~a~~~l 178 (252)
T 1f5q_B 119 LCGG-----------------AT--TADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMHAPREDYLNIYNLCRPKI 178 (252)
T ss_dssp HHCT-----------------TC--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HhCC-----------------CC--CHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHH
Confidence 4321 12 47899999999999999999999999999999999998764 3555676655
No 16
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.78 E-value=5.3e-19 Score=166.14 Aligned_cols=119 Identities=18% Similarity=0.216 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcc-CccccchhHHHHHHHHHHhhccCCC-CCChHHHHHHHHHH
Q 020646 172 ETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVR-RSHACHDRFIIATAALFLAAKSEET-PRPLNDVLRASSEL 249 (323)
Q Consensus 172 E~~lR~~~~~fI~~lg~~L~Lpq~tiaTA~vyfhRFy~r-~S~~~~d~~lVAaACLFLAcKvEE~-~rkl~dVi~v~~~l 249 (323)
....|...++||.+++.+++|++.|+++|+.|++||+.. +++...+.+++|+||||||||.||. ++++++++.++.
T Consensus 46 ~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~-- 123 (283)
T 1w98_B 46 QPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTD-- 123 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTT--
T ss_pred CHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHc--
Confidence 446799999999999999999999999999999999998 6899999999999999999999997 788998876431
Q ss_pred hhhhchhhhcccCChhhhHHhHHHHHHHHHHHHHHcCccceecCcHHHHHHHHHHcCCCh
Q 020646 250 YHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQ 309 (323)
Q Consensus 250 ~~k~~~~~~~y~~~~~~y~~~r~~IL~~E~~IL~tL~FDL~V~~P~~~L~~~l~~L~ls~ 309 (323)
..| .+++|+.||+.||++|+|++.+.+|+.||..|++.+++++
T Consensus 124 ---------------~~~--~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~~~ 166 (283)
T 1w98_B 124 ---------------GAC--SGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLND 166 (283)
T ss_dssp ---------------TSS--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTCCS
T ss_pred ---------------CCC--CHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhccCc
Confidence 012 4789999999999999999999999999999999987643
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.74 E-value=8.2e-19 Score=169.41 Aligned_cols=125 Identities=13% Similarity=0.088 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHhhccCCCCCChHHHHHHHHHHhhhhchh
Q 020646 177 YSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNIT 256 (323)
Q Consensus 177 ~~~~~fI~~lg~~L~Lpq~tiaTA~vyfhRFy~r~S~~~~d~~lVAaACLFLAcKvEE~~rkl~dVi~v~~~l~~k~~~~ 256 (323)
..+...|..+|..|+||+.++.+|+.||+||+..++++..+...|++||||+|||.|+.|+.+++|+.++.
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~prtl~ei~~~~~--------- 197 (345)
T 3k7a_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIH--------- 197 (345)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBSSCCHHHHHHSSS---------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHC---------
Confidence 35889999999999999999999999999999999999999999999999999999999999999987642
Q ss_pred hhcccCChhhhHHhHHHHHHHHHHHHHHcC------------ccceecCcHHHHHHHHHHcCCChHHHHHHHHHHhhCC
Q 020646 257 LLSYLLPIDWFEQYRERVIEAEQMILTTLN------------FELNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEG 323 (323)
Q Consensus 257 ~~~y~~~~~~y~~~r~~IL~~E~~IL~tL~------------FDL~V~~P~~~L~~~l~~L~ls~~~l~q~Aw~~lND~ 323 (323)
-.+++|..+++.|++.|+ |++.+.+|+.||.+|+..|+++.+ +.+.||.+++++
T Consensus 198 ------------v~~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~~-v~~~A~~i~~~~ 263 (345)
T 3k7a_M 198 ------------VKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQ-VTTSAEYTAKKC 263 (345)
T ss_dssp ------------CCSHHHHHHHHHHHHHHTCC-----------------------------------------------
T ss_pred ------------CCHHHHHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCHH-HHHHHHHHHHHH
Confidence 024578888888888888 999999999999999999999875 899999999974
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.49 E-value=3.8e-14 Score=137.07 Aligned_cols=124 Identities=13% Similarity=0.092 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHhhccCCCCCChHHHHHHHHHHhhhhchh
Q 020646 177 YSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNIT 256 (323)
Q Consensus 177 ~~~~~fI~~lg~~L~Lpq~tiaTA~vyfhRFy~r~S~~~~d~~lVAaACLFLAcKvEE~~rkl~dVi~v~~~l~~k~~~~ 256 (323)
..+...|.++|..|+||+.++.+|+.||++++..+.+++.....|++||||+|||.++.|+.+++|..++..
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~prtl~eI~~~~~v-------- 198 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHV-------- 198 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBCCHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCccHHHHHHHhCC--------
Confidence 448899999999999999999999999999999999999999999999999999999999999999886421
Q ss_pred hhcccCChhhhHHhHHHHHHHHHHHHHHcCcc------------ceecCcHHHHHHHHHHcCCChHHHHHHHHHHhhC
Q 020646 257 LLSYLLPIDWFEQYRERVIEAEQMILTTLNFE------------LNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSE 322 (323)
Q Consensus 257 ~~~y~~~~~~y~~~r~~IL~~E~~IL~tL~FD------------L~V~~P~~~L~~~l~~L~ls~~~l~q~Aw~~lND 322 (323)
.+++|....+.|++.|+.. +...+|..||.+|+..|+++.+ +.+.||.++++
T Consensus 199 -------------~~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~-v~~~A~~i~~~ 262 (345)
T 4bbr_M 199 -------------KTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQ-VTTSAEYTAKK 262 (345)
T ss_dssp -------------CTTHHHHHHHHHHHCC-------------------------------------------------
T ss_pred -------------CHHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHH-HHHHHHHHHHH
Confidence 2345677777888888864 6778999999999999999876 88899988865
No 19
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=98.07 E-value=1.3e-05 Score=70.40 Aligned_cols=67 Identities=16% Similarity=0.227 Sum_probs=61.8
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHhhccCCCCCChHHHHHHH
Q 020646 180 CAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRAS 246 (323)
Q Consensus 180 ~~fI~~lg~~L~Lpq~tiaTA~vyfhRFy~r~S~~~~d~~lVAaACLFLAcKvEE~~rkl~dVi~v~ 246 (323)
..+|.+++..|+|+..+..+|..++.+.....-+.++.|..||+||||+||+..+.++..++|..++
T Consensus 109 ~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~~ 175 (200)
T 1ais_B 109 TDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVA 175 (200)
T ss_dssp GGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHh
Confidence 4799999999999999999999999999887777889999999999999999999999999988764
No 20
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=97.58 E-value=0.00022 Score=62.97 Aligned_cols=67 Identities=15% Similarity=0.207 Sum_probs=60.3
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHhhccCCCCCChHHHHHHH
Q 020646 180 CAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRAS 246 (323)
Q Consensus 180 ~~fI~~lg~~L~Lpq~tiaTA~vyfhRFy~r~S~~~~d~~lVAaACLFLAcKvEE~~rkl~dVi~v~ 246 (323)
..+|.+++..|+++..+..+|..++..-....-+.++.|..||+||||+||+..+.++..++|..++
T Consensus 103 ~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~~~~~~i~~~~ 169 (207)
T 1c9b_A 103 GDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIA 169 (207)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHh
Confidence 5789999999999999999999999998877667789999999999999999999999998887654
No 21
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=97.05 E-value=0.0025 Score=60.27 Aligned_cols=103 Identities=9% Similarity=-0.004 Sum_probs=75.1
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHhccC---ccccchhHHHHHHHHHHhhccCCCC-CChHHHHHHHHHHhhhhch
Q 020646 180 CAFIQNLGLRLELPQTTIGTAMVLCHRFFVRR---SHACHDRFIIATAALFLAAKSEETP-RPLNDVLRASSELYHKQNI 255 (323)
Q Consensus 180 ~~fI~~lg~~L~Lpq~tiaTA~vyfhRFy~r~---S~~~~d~~lVAaACLFLAcKvEE~~-rkl~dVi~v~~~l~~k~~~ 255 (323)
..||.++.+.-+++..|+..|++|++|+..+. .+.....+-+-+|||.||+|.-+.. -.-+...++ .+
T Consensus 78 ~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkV-------gG- 149 (293)
T 2pmi_B 78 FNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKV-------GG- 149 (293)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHH-------HT-
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhc-------cC-
Confidence 46889999999999999999999999998753 2345667888999999999987643 222221111 11
Q ss_pred hhhcccCChhhhHHhHHHHHHHHHHHHHHcCccceecCcHHHHHHHHHH
Q 020646 256 TLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNK 304 (323)
Q Consensus 256 ~~~~y~~~~~~y~~~r~~IL~~E~~IL~tL~FDL~V~~P~~~L~~~l~~ 304 (323)
-..++|-.+|+..|..|+|+|.|. +..|...+++.
T Consensus 150 -------------isl~ELN~LE~eFL~lLdf~L~V~-~ee~~~cy~E~ 184 (293)
T 2pmi_B 150 -------------VRCHELNILENDFLKRVNYRIIPR-DHNITLCSIEQ 184 (293)
T ss_dssp -------------SCHHHHHHHHHHHHHTTTTCCSCC-TTHHHHHHHHS
T ss_pred -------------cCHHHHHHHHHHHHHHcCCceeeC-HHHHHHHHHHH
Confidence 135789999999999999999876 44454444443
No 22
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=96.11 E-value=0.00092 Score=64.11 Aligned_cols=67 Identities=16% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHhhccCCCCCChHHHHHHH
Q 020646 180 CAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRAS 246 (323)
Q Consensus 180 ~~fI~~lg~~L~Lpq~tiaTA~vyfhRFy~r~S~~~~d~~lVAaACLFLAcKvEE~~rkl~dVi~v~ 246 (323)
..||.++|..|+|+..+.-+|..++.+-....-+..+.|..||+|||||||++.+..+..++|..++
T Consensus 236 ~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~~ 302 (345)
T 3k7a_M 236 LTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTL 302 (345)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 4789999999999999999999999988766556788899999999999999988777777776654
No 23
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=96.00 E-value=0.0011 Score=63.72 Aligned_cols=69 Identities=16% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHhhccCCCCCChHHHHHHHH
Q 020646 179 YCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASS 247 (323)
Q Consensus 179 ~~~fI~~lg~~L~Lpq~tiaTA~vyfhRFy~r~S~~~~d~~lVAaACLFLAcKvEE~~rkl~dVi~v~~ 247 (323)
...||.++|..|+|+..+.-+|..++++.-...-..+..|..||+|||||||.+.+..++.++|..++.
T Consensus 235 p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~~~t~~eIa~v~~ 303 (345)
T 4bbr_M 235 NLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQ 303 (345)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHC
Confidence 457999999999999999999999999887655556788999999999999999988888888877653
No 24
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=94.85 E-value=0.052 Score=48.61 Aligned_cols=56 Identities=13% Similarity=0.074 Sum_probs=49.3
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHhhccCCC
Q 020646 180 CAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET 235 (323)
Q Consensus 180 ~~fI~~lg~~L~Lpq~tiaTA~vyfhRFy~r~S~~~~d~~lVAaACLFLAcKvEE~ 235 (323)
..||..+++.++++..+...|..++..-+....+..+.|..||+|||+||++..+.
T Consensus 135 ~~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~ 190 (235)
T 1zp2_A 135 YTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDEN 190 (235)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHHhcCC
Confidence 36888888899999999999999999988777778899999999999999997653
No 25
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=93.59 E-value=0.061 Score=49.83 Aligned_cols=56 Identities=13% Similarity=0.067 Sum_probs=48.9
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHhhccCCCC
Q 020646 181 AFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETP 236 (323)
Q Consensus 181 ~fI~~lg~~L~Lpq~tiaTA~vyfhRFy~r~S~~~~d~~lVAaACLFLAcKvEE~~ 236 (323)
.+|..++..|+++..+...|..++..-+....+-.+.|..||+||||||++..+..
T Consensus 159 ~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA~~~~~~~ 214 (285)
T 3rgf_B 159 RPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKD 214 (285)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHHHHHcCCC
Confidence 68888999999999999999999988877666778999999999999999987643
No 26
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=92.94 E-value=0.15 Score=45.96 Aligned_cols=56 Identities=16% Similarity=0.173 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCCcH----HHHHHHHHHHHHHhccCccccchhHHHHHHHHHHhhccCCC
Q 020646 180 CAFIQNLGLRLELPQ----TTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET 235 (323)
Q Consensus 180 ~~fI~~lg~~L~Lpq----~tiaTA~vyfhRFy~r~S~~~~d~~lVAaACLFLAcKvEE~ 235 (323)
..||..++..|+++. .+...|..++..-+....+..+.|..||+|||+||++..+.
T Consensus 152 ~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~ 211 (258)
T 2i53_A 152 YQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKF 211 (258)
T ss_dssp HHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCC
Confidence 468889999999886 57788888888887777778899999999999999997654
No 27
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=91.39 E-value=0.35 Score=43.59 Aligned_cols=56 Identities=11% Similarity=-0.007 Sum_probs=44.8
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHhc-cCccccchhHHHHHHHHHHhhccCCC
Q 020646 180 CAFIQNLGLRLELPQTTIGTAMVLCHRFFV-RRSHACHDRFIIATAALFLAAKSEET 235 (323)
Q Consensus 180 ~~fI~~lg~~L~Lpq~tiaTA~vyfhRFy~-r~S~~~~d~~lVAaACLFLAcKvEE~ 235 (323)
..||..+++.++++..+..+|..++..-.. ..-+-.+.|..||+|||+||++..+.
T Consensus 147 ~~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~ 203 (257)
T 2ivx_A 147 HTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNW 203 (257)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCC
Confidence 468888889999998888888888766553 33356789999999999999997553
No 28
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=91.14 E-value=0.26 Score=45.05 Aligned_cols=57 Identities=18% Similarity=0.029 Sum_probs=48.3
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHhhccCCCC
Q 020646 180 CAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETP 236 (323)
Q Consensus 180 ~~fI~~lg~~L~Lpq~tiaTA~vyfhRFy~r~S~~~~d~~lVAaACLFLAcKvEE~~ 236 (323)
..||..++..++++..+...|..++..-.....+..+.|..||+|||++|++.-+..
T Consensus 139 ~~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~ 195 (269)
T 2b9r_A 139 LHFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNG 195 (269)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCC
Confidence 478888999999998888888888887776677788999999999999999876543
No 29
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=88.47 E-value=0.95 Score=35.84 Aligned_cols=61 Identities=16% Similarity=0.172 Sum_probs=44.6
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHhccCc-----cccchhHHHHHHHHHHhhccCCCCCChHHHHH
Q 020646 183 IQNLGLRLELPQTTIGTAMVLCHRFFVRRS-----HACHDRFIIATAALFLAAKSEETPRPLNDVLR 244 (323)
Q Consensus 183 I~~lg~~L~Lpq~tiaTA~vyfhRFy~r~S-----~~~~d~~lVAaACLFLAcKvEE~~rkl~dVi~ 244 (323)
|.++|..|++.+ ++..|..++.+|=..-+ -.+++.=..++||+|+|||.--....=..++.
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kVdK~KL~~ 71 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMVA 71 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhccccccccHHHHHHHHHHHHHHccCCCHHHHHH
Confidence 679999999988 66777899999964321 12455666899999999998876655444444
No 30
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=87.24 E-value=0.51 Score=42.75 Aligned_cols=58 Identities=19% Similarity=0.067 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHcCCcH-HHHHHHHHHHHHHhccCc-cccchhHHHHHHHHHHhhccCCCC
Q 020646 179 YCAFIQNLGLRLELPQ-TTIGTAMVLCHRFFVRRS-HACHDRFIIATAALFLAAKSEETP 236 (323)
Q Consensus 179 ~~~fI~~lg~~L~Lpq-~tiaTA~vyfhRFy~r~S-~~~~d~~lVAaACLFLAcKvEE~~ 236 (323)
...||..++..++++. .+...|..++..-..... +..+.|..||+|||++|++.-+.+
T Consensus 139 p~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~~ 198 (260)
T 2cch_B 139 VNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQ 198 (260)
T ss_dssp HHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCCC
Confidence 3578999999999876 666777766665444444 677889999999999999875543
No 31
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=86.97 E-value=1.9 Score=38.92 Aligned_cols=65 Identities=23% Similarity=0.369 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHhccC---ccccchhHHHHHHHHHHhhccCCCCCChHHHH
Q 020646 179 YCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRR---SHACHDRFIIATAALFLAAKSEETPRPLNDVL 243 (323)
Q Consensus 179 ~~~fI~~lg~~L~Lpq~tiaTA~vyfhRFy~r~---S~~~~d~~lVAaACLFLAcKvEE~~rkl~dVi 243 (323)
+.+.|..+.++-++|..++.-|+.+.+.|.-.+ ..+--.+..||+||+.+|+--...|.++.++.
T Consensus 15 M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~PiplaE~r 82 (260)
T 3h4c_A 15 MLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLPLAEVR 82 (260)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCccHHHHH
Confidence 356678999999999999999999999997532 22333478899999999998778888887763
No 32
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=86.68 E-value=0.42 Score=45.84 Aligned_cols=55 Identities=9% Similarity=0.030 Sum_probs=44.3
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhccCc-cccchhHHHHHHHHHHhhccCCC
Q 020646 181 AFIQNLGLRLELPQTTIGTAMVLCHRFFVRRS-HACHDRFIIATAALFLAAKSEET 235 (323)
Q Consensus 181 ~fI~~lg~~L~Lpq~tiaTA~vyfhRFy~r~S-~~~~d~~lVAaACLFLAcKvEE~ 235 (323)
.||..+.+.|+++..+..+|..++..-+.... +..|.|..||+|||+||++..+.
T Consensus 155 ~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~ 210 (358)
T 2pk2_A 155 THVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNW 210 (358)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhCC
Confidence 57788888899998888888888877654333 56789999999999999998653
No 33
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=86.09 E-value=2.3 Score=38.16 Aligned_cols=54 Identities=15% Similarity=0.205 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCCcHHHH----HHHHHHHHHHhccCccccchhHHHHHHHHHHhhccC
Q 020646 180 CAFIQNLGLRLELPQTTI----GTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSE 233 (323)
Q Consensus 180 ~~fI~~lg~~L~Lpq~ti----aTA~vyfhRFy~r~S~~~~d~~lVAaACLFLAcKvE 233 (323)
..||..+...++++..+. ..|..++..-.....+..+.|..||+|||++|.+..
T Consensus 153 ~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~ 210 (254)
T 2f2c_A 153 TDFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETD 210 (254)
T ss_dssp GGSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhc
Confidence 367888888888876542 345555555545556678899999999999999985
No 34
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=84.16 E-value=1.3 Score=40.04 Aligned_cols=57 Identities=16% Similarity=0.003 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHcCCcHHH----HHHHHHHHHHHhccCccccchhHHHHHHHHHHhhccCCC
Q 020646 179 YCAFIQNLGLRLELPQTT----IGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET 235 (323)
Q Consensus 179 ~~~fI~~lg~~L~Lpq~t----iaTA~vyfhRFy~r~S~~~~d~~lVAaACLFLAcKvEE~ 235 (323)
...||..+...++++..+ ...|..++..-.....+..+.|..||+|||++|.+..+.
T Consensus 151 p~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~ 211 (257)
T 1g3n_C 151 ATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVI 211 (257)
T ss_dssp HHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGS
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCC
Confidence 346888888888887543 344666666555556677899999999999999987753
No 35
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=83.38 E-value=1.4 Score=41.39 Aligned_cols=54 Identities=24% Similarity=0.196 Sum_probs=38.7
Q ss_pred HHHHHHHH---cCCcHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHhhccCCC
Q 020646 182 FIQNLGLR---LELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET 235 (323)
Q Consensus 182 fI~~lg~~---L~Lpq~tiaTA~vyfhRFy~r~S~~~~d~~lVAaACLFLAcKvEE~ 235 (323)
|+..+... ++.+..+...|..++..-+....+-.|.|..||+|||++|++..+.
T Consensus 170 ~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~IAaAai~lA~~~~~~ 226 (323)
T 1jkw_A 170 FLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGI 226 (323)
T ss_dssp HHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHHSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHHcCCHHHHHHHHHHHHHHHcCC
Confidence 44444433 3445566777888887776665566789999999999999987553
No 36
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=82.60 E-value=1.6 Score=39.64 Aligned_cols=55 Identities=9% Similarity=0.059 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHcCCcHHHH----HHHHHHHHHHhccCccccchhHHHHHHHHHHhhccC
Q 020646 179 YCAFIQNLGLRLELPQTTI----GTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSE 233 (323)
Q Consensus 179 ~~~fI~~lg~~L~Lpq~ti----aTA~vyfhRFy~r~S~~~~d~~lVAaACLFLAcKvE 233 (323)
...||..+...++++..+. ..|..++..-..-..+..+.|..||+|||++|++.-
T Consensus 157 p~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l 215 (271)
T 2w96_A 157 PHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGL 215 (271)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHh
Confidence 3578888999999987653 245555544333344567889999999999998753
No 37
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=78.86 E-value=7.6 Score=38.13 Aligned_cols=66 Identities=12% Similarity=-0.004 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHcCCcH-H---HHHHHHHHHHHHhc--cCccccchhHHHHHHHHHHhhccCCCCCChHHHHHHHH
Q 020646 179 YCAFIQNLGLRLELPQ-T---TIGTAMVLCHRFFV--RRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASS 247 (323)
Q Consensus 179 ~~~fI~~lg~~L~Lpq-~---tiaTA~vyfhRFy~--r~S~~~~d~~lVAaACLFLAcKvEE~~rkl~dVi~v~~ 247 (323)
+..-|+.+|.+|++++ . -++|+. +.... ..-|++.+.--|.+.|+|.-||+.....+.++|+..+.
T Consensus 282 Aa~Rl~~LC~~L~~~~~~l~~~IWt~f---e~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~tFk~Ii~~Yr 353 (411)
T 4ell_A 282 AYLRLNTLCERLLSEHPELEHIIWTLF---QHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYK 353 (411)
T ss_dssp HHHHHHHHHHHHCTTSTTHHHHHHHHH---HHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHH---HHHHHhhhHhhccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHH
Confidence 5568899999999875 2 344544 33332 23455555667999999999999998899999998654
No 38
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=77.36 E-value=6 Score=37.99 Aligned_cols=69 Identities=10% Similarity=-0.026 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHcCCcHH-HHHHHHHHHHHHhcc--CccccchhHHHHHHHHHHhhccCCCCCChHHHHHHHH
Q 020646 179 YCAFIQNLGLRLELPQT-TIGTAMVLCHRFFVR--RSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASS 247 (323)
Q Consensus 179 ~~~fI~~lg~~L~Lpq~-tiaTA~vyfhRFy~r--~S~~~~d~~lVAaACLFLAcKvEE~~rkl~dVi~v~~ 247 (323)
+..-|+++|.+|+++.. +.....+.|...... .-+.+...--+.+.|+|.-||+.....+.++|+..+.
T Consensus 218 a~~Rl~~LC~~L~~~~~~~~~~iWt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~~tF~~Ii~~Yr 289 (347)
T 2r7g_A 218 AYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYK 289 (347)
T ss_dssp HHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhChHhhcCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 44568999999987763 444444455554432 3445555667999999999999998899999998643
No 39
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=76.77 E-value=2.4 Score=39.47 Aligned_cols=54 Identities=20% Similarity=0.134 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCCcHH----HHHHHHHHHHHHhccCccccchhHHHHHHHHHHhhccCC
Q 020646 181 AFIQNLGLRLELPQT----TIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEE 234 (323)
Q Consensus 181 ~fI~~lg~~L~Lpq~----tiaTA~vyfhRFy~r~S~~~~d~~lVAaACLFLAcKvEE 234 (323)
.||..+...++++.. +...|..++.--.....+..+.|..||+|||++|.+.-+
T Consensus 173 ~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~ 230 (306)
T 3g33_B 173 DFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLG 230 (306)
T ss_dssp GGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhc
Confidence 578888888887643 334555566555555667789999999999999998766
No 40
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=74.27 E-value=7.7 Score=36.53 Aligned_cols=63 Identities=13% Similarity=0.135 Sum_probs=44.7
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHHHhccCc---cccchhHHHHHHHHHHhhccC-CCCCChHHHHHHH
Q 020646 184 QNLGLRLELPQTTIGTAMVLCHRFFVRRS---HACHDRFIIATAALFLAAKSE-ETPRPLNDVLRAS 246 (323)
Q Consensus 184 ~~lg~~L~Lpq~tiaTA~vyfhRFy~r~S---~~~~d~~lVAaACLFLAcKvE-E~~rkl~dVi~v~ 246 (323)
.++|+.|+|+..|...|.-.|++.-..-+ -..-+....-.||||.||... +...++..+++.+
T Consensus 7 ~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~~~~~w~acLY~a~~~~~~n~vsLt~LLr~~ 73 (304)
T 2qdj_A 7 TALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQKNI 73 (304)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHTCCCSCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccchHHHHHHhHHHHhhccCCCcCcHHHHHHHc
Confidence 68899999999999999999999766411 111123344556699999654 4678888888765
No 41
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=67.79 E-value=14 Score=38.41 Aligned_cols=70 Identities=10% Similarity=-0.013 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHcCCcHH-HHHHHHHHHHHHhcc--CccccchhHHHHHHHHHHhhccCCCCCChHHHHHHHHH
Q 020646 179 YCAFIQNLGLRLELPQT-TIGTAMVLCHRFFVR--RSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSE 248 (323)
Q Consensus 179 ~~~fI~~lg~~L~Lpq~-tiaTA~vyfhRFy~r--~S~~~~d~~lVAaACLFLAcKvEE~~rkl~dVi~v~~~ 248 (323)
+..-|+.+|.+|++++. +....-++|+..... .-+.+.+.--|.+.|+|.-||+.....+.++|+..+..
T Consensus 527 Aa~Rl~~LC~~L~~~~~~i~~~IWt~fe~~l~~~t~L~~dRHLDQiilCsiY~icKv~~~~ltFk~Ii~~Yr~ 599 (656)
T 4elj_A 527 AYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKD 599 (656)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhHHHHhcchHHHHHHHHHHHHHHhccCCcCHHHHHHHHHh
Confidence 55788999999987753 333444455555432 34455556679999999999999989999999987543
No 42
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=60.37 E-value=19 Score=37.42 Aligned_cols=63 Identities=10% Similarity=0.074 Sum_probs=46.6
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHhcc-----CccccchhHHHHHHHHHHhhccCCCCCChHHHHHHH
Q 020646 183 IQNLGLRLELPQTTIGTAMVLCHRFFVR-----RSHACHDRFIIATAALFLAAKSEETPRPLNDVLRAS 246 (323)
Q Consensus 183 I~~lg~~L~Lpq~tiaTA~vyfhRFy~r-----~S~~~~d~~lVAaACLFLAcKvEE~~rkl~dVi~v~ 246 (323)
..++|+.|+++..|...|...|..-... .++.+-..+-+|. .++.||.+|+...++..+++.+
T Consensus 8 f~~lC~~Ln~d~~~~~~Aw~~~~~~~~~~~~l~~tleg~~~~W~aC-~ly~~~~~~gn~vsLt~lLr~~ 75 (656)
T 4elj_A 8 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGIC-IFIAAVDLDEMSFTFTELQKNI 75 (656)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHCSCC-----CCHHHHHHH-HHHHHHHTTCCCSCHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhccccccCCcccchHHhhhh-hheeeeeccCCeeeHHHHHHHh
Confidence 3689999999999999999999998842 3344444443333 4777888899999999998865
No 43
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=59.14 E-value=16 Score=33.32 Aligned_cols=52 Identities=12% Similarity=-0.013 Sum_probs=33.4
Q ss_pred HHHHHHHHHHcCCcH-----------HHHHHHHHHHHHHhccCccccchhHHHHHHHHHHhhc
Q 020646 180 CAFIQNLGLRLELPQ-----------TTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAK 231 (323)
Q Consensus 180 ~~fI~~lg~~L~Lpq-----------~tiaTA~vyfhRFy~r~S~~~~d~~lVAaACLFLAcK 231 (323)
..||..+...++++. .+...|..++..-.....+..+.|..||+|||++|+.
T Consensus 152 ~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~la~~ 214 (283)
T 1w98_B 152 VSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFSS 214 (283)
T ss_dssp HHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhccCchhhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHC
Confidence 357777776666532 2222344444444444556788999999999999985
No 44
>2ljx_A Protein E6; metal binding protein; NMR {Human papillomavirus} PDB: 2ljy_A
Probab=27.84 E-value=0.67 Score=35.73 Aligned_cols=54 Identities=19% Similarity=0.221 Sum_probs=39.0
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHhccCcc------------ccchhHHHHHHHHHHhhccCCC
Q 020646 182 FIQNLGLRLELPQTTIGTAMVLCHRFFVRRSH------------ACHDRFIIATAALFLAAKSEET 235 (323)
Q Consensus 182 fI~~lg~~L~Lpq~tiaTA~vyfhRFy~r~S~------------~~~d~~lVAaACLFLAcKvEE~ 235 (323)
-|.++|+.|++|..-+-..+++.+++.....+ ++.-++.+...|+.+++|+|..
T Consensus 13 tl~~Lc~~~~i~~~dl~L~CvFC~~~Lt~~E~~~F~~k~L~lVwR~~~pya~C~~Cl~~~a~~e~~ 78 (84)
T 2ljx_A 13 KLPQLCTELQTTIHDIILECVYCKQQLLRREVYDFARRDLCIVYRDGNPYAVCDKCLKFYSKISEY 78 (84)
T ss_dssp SHHHHHHHTTSCTTTCCCEETTTCCBCCHHHHHHHHHTTCCCEEETTEEEECCHHHHHHHTTCSSC
T ss_pred cHHHHHHHHCCCHHHeEeEeeecCCcCCHHHHHHHhhcCeEEEEECCEeeEEcHHHHHHHHHHHHH
Confidence 47889999999877666666666665443211 3444678899999999999974
No 45
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=26.27 E-value=2.7e+02 Score=24.74 Aligned_cols=53 Identities=11% Similarity=0.065 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHcCCcHHH----HHHHHHHHHHHhccCccccchhHHHHHHHHHHhhc
Q 020646 179 YCAFIQNLGLRLELPQTT----IGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAK 231 (323)
Q Consensus 179 ~~~fI~~lg~~L~Lpq~t----iaTA~vyfhRFy~r~S~~~~d~~lVAaACLFLAcK 231 (323)
...||..+...++++... ...|..++.-...-..+..+.|..||+||+.++.+
T Consensus 149 p~~FL~~~l~~~~~~~~~~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~l~ 205 (252)
T 1f5q_B 149 STDLICYILHIMHAPREDYLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLTMN 205 (252)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHhc
Confidence 346777777788877543 22344444444444456678899999999877763
No 46
>3bya_B Glutamate [NMDA] receptor subunit zeta-1 peptide; calmodulin, EF hand motif, NR1, N-methyl-D-aspartate recepto glutamate, central nervous system; 1.85A {Homo sapiens} PDB: 2hqw_B
Probab=20.07 E-value=14 Score=21.98 Aligned_cols=11 Identities=64% Similarity=0.797 Sum_probs=8.6
Q ss_pred Ccccccccccc
Q 020646 81 APSFKRRKFSA 91 (323)
Q Consensus 81 ~~~~~~~~~~~ 91 (323)
+.+|||||-|.
T Consensus 14 ass~krrrssk 24 (26)
T 3bya_B 14 ASSFKRRRSSK 24 (26)
T ss_pred HHHHHHhhhcc
Confidence 58999998663
Done!