BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020650
(323 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BX4|A Chain A, Structure Of Human Adenosine Kinase At 1.50 Angstroms
pdb|2I6A|A Chain A, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|B Chain B, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|C Chain C, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|D Chain D, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6B|A Chain A, Human Adenosine Kinase In Complex With An Acetylinic
Inhibitor
pdb|2I6B|B Chain B, Human Adenosine Kinase In Complex With An Acetylinic
Inhibitor
Length = 345
Score = 399 bits (1025), Expect = e-111, Method: Compositional matrix adjust.
Identities = 188/341 (55%), Positives = 248/341 (72%), Gaps = 20/341 (5%)
Query: 3 QEGILLGMGNPLLDISSVVDDDFLNKY------------------DEMASKYNVEYIAGG 44
+E IL GMGNPLLDIS+VVD DFL+KY DE+ K+ VEY AGG
Sbjct: 5 RENILFGMGNPLLDISAVVDKDFLDKYSLKPNDQILAEDKHKELFDELVKKFKVEYHAGG 64
Query: 45 ATQNSIRVAQWMLQIPG-ATSYIGCIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCA 103
+TQNSI+VAQWM+Q P A ++ GCIG DKFGE +K+ + A V+ HYYE TGTCA
Sbjct: 65 STQNSIKVAQWMIQQPHKAATFFGCIGIDKFGEILKRKAAEAHVDAHYYEQNEQPTGTCA 124
Query: 104 VCVVGGERSLVANLSAANCYKSE-HLKKPENWALVEKAKYFYIAGFFLTVSPDSIQLVAE 162
C+ G RSL+ANL+AANCYK E HL +NW LVEKA+ YIAGFFLTVSP+S+ VA
Sbjct: 125 ACITGDNRSLIANLAAANCYKKEKHLDLEKNWMLVEKARVCYIAGFFLTVSPESVLKVAH 184
Query: 163 HAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEI 222
HA+ NN++F +NLSAPFI +F+K++L KV+PY+D +FGNETEA TF++ QG+ET D++EI
Sbjct: 185 HASENNRIFTLNLSAPFISQFYKESLMKVMPYVDILFGNETEAATFAREQGFETKDIKEI 244
Query: 223 ALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVG 282
A K PK + R+R + TQG D ++A + ++ F V+ + +++DTNGAGDAFVG
Sbjct: 245 AKKTQALPKMNSKRQRIVIFTQGRDDTIMATESEVTAFAVLDQDQKEIIDTNGAGDAFVG 304
Query: 283 GFLSQLVQEKPIEECVRAGCYTSHVIIQRSGCTYPEKPEFN 323
GFLSQLV +KP+ EC+RAG Y + +II+R+GCT+PEKP+F+
Sbjct: 305 GFLSQLVSDKPLTECIRAGHYAASIIIRRTGCTFPEKPDFH 345
>pdb|3LOO|A Chain A, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|B Chain B, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|C Chain C, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
Length = 365
Score = 338 bits (866), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 160/340 (47%), Positives = 234/340 (68%), Gaps = 20/340 (5%)
Query: 3 QEGILLGMGNPLLDISSVVDDDFLNKYD------------------EMASKYNVEYIAGG 44
++G+L+G+GNPLLDIS+VV+ D LNKYD E+ KY EYIAGG
Sbjct: 22 RDGMLVGLGNPLLDISAVVEKDLLNKYDMQPNNAILAEEKHMPMYQELIEKYQAEYIAGG 81
Query: 45 ATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAV 104
+ QNS+RVAQW+LQ P + GC+G+D++ +++ + GVNV Y ++ TGTCAV
Sbjct: 82 SVQNSLRVAQWILQRPRTAIFFGCVGQDEYARILEERATSNGVNVQYQRSATSPTGTCAV 141
Query: 105 CVVGGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYIAGFFLTVSPDSIQLVAEHA 164
V G +RSL ANL+AAN + EHL+ N A ++ A++FY++GFF TVS +S VA+ A
Sbjct: 142 LVTGTQRSLCANLAAANDFTPEHLRSDGNRAYLQGAQFFYVSGFFFTVSFESALSVAKEA 201
Query: 165 AANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIAL 224
AA ++FMMNLSAPF+ +F+K+ LE++ PY+D +FGNETEA +K + T+D+ EI
Sbjct: 202 AATGRMFMMNLSAPFVPQFYKNNLEEIFPYVDVLFGNETEAIALAKEFNYGTEDLREIGK 261
Query: 225 KLSQWPKASEIRKRTAVITQGADPVVVAQDG--KLKKFPVIVLPKDKLVDTNGAGDAFVG 282
+++ PK + RKR +ITQG+DPV++ + G +++FPV L +++VDTNGAGDAFVG
Sbjct: 262 RIAALPKENGKRKRIVIITQGSDPVLLIEAGTDNVREFPVQKLAPEQMVDTNGAGDAFVG 321
Query: 283 GFLSQLVQEKPIEECVRAGCYTSHVIIQRSGCTYPEKPEF 322
GFL+QL+Q + ++ C++ G + + IIQRSGCT+ +P F
Sbjct: 322 GFLAQLLQSRTVDVCIKCGIWAAREIIQRSGCTFEGEPSF 361
>pdb|2XTB|A Chain A, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Activator
pdb|3OTX|A Chain A, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Inhibitor Ap5a
pdb|3OTX|B Chain B, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Inhibitor Ap5a
Length = 347
Score = 250 bits (638), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 130/332 (39%), Positives = 189/332 (56%), Gaps = 20/332 (6%)
Query: 12 NPLLDISSVVDDDFLNKY------------------DEMASKYNVEYIAGGATQNSIRVA 53
NPLLD+S+ V D+FL KY D++ NV Y+ GG+ N RVA
Sbjct: 15 NPLLDVSAHVSDEFLVKYGLERGTAILLSERQKGIFDDIEKMPNVRYVPGGSGLNVARVA 74
Query: 54 QWMLQIPGA--TSYIGCIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVVGGER 111
QWM Q +Y+GCI D++G+ +K+ ++ G+ + A +G CAVC+ G ER
Sbjct: 75 QWMQQAYKGKFVTYVGCIADDRYGKVLKEAAEHEGIVMAVEHTTKAGSGACAVCITGKER 134
Query: 112 SLVANLSAANCYKSEHLKKPENWALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVF 171
+LVA+L AAN SEH++ P +++++ FY +GF LTV + + A + +F
Sbjct: 135 TLVADLGAANHLSSEHMRSPAVVRAMDESRIFYFSGFTLTVDVNHVLQACRKAREVDGLF 194
Query: 172 MMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPK 231
M+NLSAPFI +FF L +VLPY D I N EA+ F+ + W+TD VEEIA +
Sbjct: 195 MINLSAPFIMQFFSAQLGEVLPYTDIIVANRHEAKEFANMMKWDTDCVEEIARRAVSEVP 254
Query: 232 ASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQE 291
+ + R V T+ + V+A ++ PV L +DK++D NGAGDAF+GGFLS
Sbjct: 255 YTGTKGRVVVFTRDIESTVLATKDGVETVPVPQLDQDKVIDMNGAGDAFMGGFLSAYAVG 314
Query: 292 KPIEECVRAGCYTSHVIIQRSGCTYPEKPEFN 323
K + C G YT+ +IQR GC++PEKP F+
Sbjct: 315 KDLRRCCETGHYTAQEVIQRDGCSFPEKPSFS 346
>pdb|3UQ6|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine And Amp
pdb|3UQ6|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine And Amp
pdb|3UQ9|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Tubercidin
pdb|3UQ9|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Tubercidin
Length = 372
Score = 218 bits (556), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 125/344 (36%), Positives = 194/344 (56%), Gaps = 26/344 (7%)
Query: 4 EGILLGMGNPLLDISSVVD-DDFLNK-------------------YDEMASKYNVEYIAG 43
EG + GMGNPLLDI +VD DDF+ + YDE+ K + YIAG
Sbjct: 26 EGYVFGMGNPLLDI--IVDADDFMYRKYNLKKDNIVLAEEKHMTIYDEIQKKKKLNYIAG 83
Query: 44 GATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKN-SKLAGVNVHYYEDESASTGTC 102
GAT N++++ QW++Q P SY+GCIG D G+ +K + S L V +E TG
Sbjct: 84 GATLNTVKMIQWIIQKPFVCSYVGCIGADIQGKYIKNDCSALDLVTEFQIAEEPLMTGKV 143
Query: 103 AVCVVGGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYIAGFFLTVSPDSIQLVAE 162
AV V RS+V L AA H+++P W+LVEKA+ +YIAGF + + + +A+
Sbjct: 144 AVLVSEKLRSMVTYLGAACDLSLAHIEQPHVWSLVEKAQVYYIAGFVINTCYEGMLKIAK 203
Query: 163 HAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEI 222
H+ N K+F NLSAPF+ +F +++++ Y + +FGNE+EA + +V G D V
Sbjct: 204 HSLENEKLFCFNLSAPFLSQFNTKEVDEMISYSNIVFGNESEAEAYGEVHGLLEDTVHAT 263
Query: 223 ALKLSQWPKAS-EIRKRTAVITQGADPVVV--AQDGKLKKFPVIVLPKDKLVDTNGAGDA 279
A ++ P A + RKR +IT+G +P++ + D ++ +F V D+++DTNGAGDA
Sbjct: 264 ARYIADLPFADGKKRKRLVIITRGKNPLLYTDSSDSEIHQFMVEQFKDDQIIDTNGAGDA 323
Query: 280 FVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSGCTYPEKPEFN 323
F GF++ ++ KP+ + A + II RSG + + ++
Sbjct: 324 FAAGFIADYIRGKPMITSLHAAVKAAAYIICRSGFSLGSRDSYS 367
>pdb|3VAQ|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine
pdb|3VAQ|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine
pdb|4DC3|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
2- Fluoroadenosine
pdb|4DC3|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
2- Fluoroadenosine
Length = 372
Score = 218 bits (555), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 125/344 (36%), Positives = 194/344 (56%), Gaps = 26/344 (7%)
Query: 4 EGILLGMGNPLLDISSVVD-DDFLNK-------------------YDEMASKYNVEYIAG 43
EG + GMGNPLLDI +VD DDF+ + YDE+ K + YIAG
Sbjct: 26 EGYVFGMGNPLLDI--IVDADDFMYRKYNLKKDNIVLAEEKHMTIYDEIQKKKKLNYIAG 83
Query: 44 GATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKN-SKLAGVNVHYYEDESASTGTC 102
GAT N++++ QW++Q P SY+GCIG D G+ +K + S L V +E TG
Sbjct: 84 GATLNTVKMIQWIIQKPFVCSYVGCIGADIQGKYIKNDCSALDLVTEFQIAEEPLMTGKV 143
Query: 103 AVCVVGGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYIAGFFLTVSPDSIQLVAE 162
AV V RS+V L AA H+++P W+LVEKA+ +YIAGF + + + +A+
Sbjct: 144 AVLVSEKLRSMVTYLGAACDLSLAHIEQPHVWSLVEKAQVYYIAGFVINTCYEGMLKIAK 203
Query: 163 HAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEI 222
H+ N K+F NLSAPF+ +F +++++ Y + +FGNE+EA + +V G D V
Sbjct: 204 HSLENEKLFCFNLSAPFLSQFNTKEVDEMISYSNIVFGNESEAEAYGEVHGLLEDTVHAT 263
Query: 223 ALKLSQWPKAS-EIRKRTAVITQGADPVVV--AQDGKLKKFPVIVLPKDKLVDTNGAGDA 279
A ++ P A + RKR +IT+G +P++ + D ++ +F V D+++DTNGAGDA
Sbjct: 264 ARYIADLPFADGKKRKRLVIITRGKNPLLYTDSSDSEIHQFMVEQFKDDQIIDTNGAGDA 323
Query: 280 FVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSGCTYPEKPEFN 323
F GF++ ++ KP+ + A + II RSG + + ++
Sbjct: 324 FAAGFIADYIRGKPMITSLHAAVKAAAYIICRSGFSLGSRDSYS 367
>pdb|3VAS|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine In Occluded Loop Conformation
pdb|3VAS|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine In Occluded Loop Conformation
Length = 370
Score = 218 bits (555), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 125/344 (36%), Positives = 194/344 (56%), Gaps = 26/344 (7%)
Query: 4 EGILLGMGNPLLDISSVVD-DDFLNK-------------------YDEMASKYNVEYIAG 43
EG + GMGNPLLDI +VD DDF+ + YDE+ K + YIAG
Sbjct: 24 EGYVFGMGNPLLDI--IVDADDFMYRKYNLKKDNIVLAEEKHMTIYDEIQKKKKLNYIAG 81
Query: 44 GATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKN-SKLAGVNVHYYEDESASTGTC 102
GAT N++++ QW++Q P SY+GCIG D G+ +K + S L V +E TG
Sbjct: 82 GATLNTVKMIQWIIQKPFVCSYVGCIGADIQGKYIKNDCSALDLVTEFQIAEEPLMTGKV 141
Query: 103 AVCVVGGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYIAGFFLTVSPDSIQLVAE 162
AV V RS+V L AA H+++P W+LVEKA+ +YIAGF + + + +A+
Sbjct: 142 AVLVSEKLRSMVTYLGAACDLSLAHIEQPHVWSLVEKAQVYYIAGFVINTCYEGMLKIAK 201
Query: 163 HAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEI 222
H+ N K+F NLSAPF+ +F +++++ Y + +FGNE+EA + +V G D V
Sbjct: 202 HSLENEKLFCFNLSAPFLSQFNTKEVDEMISYSNIVFGNESEAEAYGEVHGLLEDTVHAT 261
Query: 223 ALKLSQWPKAS-EIRKRTAVITQGADPVVV--AQDGKLKKFPVIVLPKDKLVDTNGAGDA 279
A ++ P A + RKR +IT+G +P++ + D ++ +F V D+++DTNGAGDA
Sbjct: 262 ARYIADLPFADGKKRKRLVIITRGKNPLLYTDSSDSEIHQFMVEQFKDDQIIDTNGAGDA 321
Query: 280 FVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSGCTYPEKPEFN 323
F GF++ ++ KP+ + A + II RSG + + ++
Sbjct: 322 FAAGFIADYIRGKPMITSLHAAVKAAAYIICRSGFSLGSRDSYS 365
>pdb|1LII|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
2 And Amp-Pcp
pdb|1LIJ|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Prodrug 2
7-Iodotubercidin And Amp-Pcp
pdb|1LIK|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
Length = 363
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 117/346 (33%), Positives = 179/346 (51%), Gaps = 46/346 (13%)
Query: 7 LLGMGNPLLDI-----SSVVDDDFLNKYDEMAS------------KYNVEYIAGGATQNS 49
+ +GNP+LD+ SS +D+ FL + D + ++N + GG+ NS
Sbjct: 15 VFAIGNPILDLVAEVPSSFLDEFFLKRGDATLATPEQMRIYSTLDQFNPTSLPGGSALNS 74
Query: 50 IRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVVGG 109
+RV Q +L+ PG+ Y+G IG D G+ +K+ G+ + STGTCAV +
Sbjct: 75 VRVVQKLLRKPGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQSTGTCAVLINEK 134
Query: 110 ERSLVANLSAANCYKSEHLKKPENW-ALVEKAKYFYIAGFFLTVSPDSIQLVAEHA-AAN 167
ER+L +L A + + PENW A FY + LT +P + VA +A
Sbjct: 135 ERTLCTHLGACGSF-----RIPENWTTFASGALIFYATAYTLTATPKNALEVAGYAHGIP 189
Query: 168 NKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLS 227
N +F +NLSAPF E +KDA++ +L + + +FGNE E +KV E++AL ++
Sbjct: 190 NAIFTLNLSAPFCVELYKDAMQSLLLHTNILFGNEEEFAHLAKVHNLVA--AEKVALSVA 247
Query: 228 QWPKASEI-----RKRTA----------VITQGADPVVVAQ---DGK--LKKFPVIVLPK 267
A E+ R TA V+T+G +PV+ A+ DG + + V V+
Sbjct: 248 NKEHAVEVCTGALRLLTAGQNTGATKLVVMTRGHNPVIAAEQTADGTVVVHEVGVPVVAA 307
Query: 268 DKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSG 313
+K+VDTNGAGDAFVGGFL L Q K +++C+ G + +IQ G
Sbjct: 308 EKIVDTNGAGDAFVGGFLYGLSQGKTVKQCIMCGNACAQDVIQHVG 353
>pdb|1LIO|A Chain A, Structure Of Apo T. Gondii Adenosine Kinase
Length = 363
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 116/346 (33%), Positives = 177/346 (51%), Gaps = 46/346 (13%)
Query: 7 LLGMGNPLLDI-----SSVVDDDFLNKYDEMAS------------KYNVEYIAGGATQNS 49
+ +GNP+LD+ SS +D+ FL + D + ++N + GG+ NS
Sbjct: 15 VFAIGNPILDLVAEVPSSFLDEFFLKRGDATLATPEQMRIYSTLDQFNPTSLPGGSALNS 74
Query: 50 IRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVVGG 109
+RV Q +L+ PG+ Y+G IG D G+ +K+ G+ + STGTCAV +
Sbjct: 75 VRVVQKLLRKPGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQSTGTCAVLINEK 134
Query: 110 ERSLVANLSAANCYKSEHLKKPENW-ALVEKAKYFYIAGFFLTVSPDSIQLVAEHA-AAN 167
ER+L +L A + + PE+W A FY + LT +P + VA +A
Sbjct: 135 ERTLCTHLGACGSF-----RIPEDWTTFASGALIFYATAYTLTATPKNALEVAGYAHGIP 189
Query: 168 NKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLS 227
N +F +NLSAPF E +KDA++ +L + + +FGNE E +KV D + AL +
Sbjct: 190 NAIFTLNLSAPFCVELYKDAMQSLLLHTNILFGNEEEFAHLAKVHNLVAAD--KTALSTA 247
Query: 228 QWPKASEI-----RKRTA----------VITQGADPVVVAQ---DGK--LKKFPVIVLPK 267
A E+ R TA V+T+G +PV+ A+ DG + + V V+
Sbjct: 248 NKEHAVEVCTGALRLLTAGQNTGATKLVVMTRGHNPVIAAEQTADGTVVVHEVGVPVVAA 307
Query: 268 DKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSG 313
+K+VDTNGAGDAFVGGFL L Q K +++C+ G + +IQ G
Sbjct: 308 EKIVDTNGAGDAFVGGFLYGLSQGKTVKQCIMCGNACAQDVIQHVG 353
>pdb|2ABS|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With Amp-Pcp
pdb|2A9Y|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine
pdb|2A9Z|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine And Amp-Pcp
pdb|2AA0|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside
pdb|2AB8|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside And Amp-Pcp
Length = 383
Score = 165 bits (417), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 115/346 (33%), Positives = 176/346 (50%), Gaps = 46/346 (13%)
Query: 7 LLGMGNPLLDI-----SSVVDDDFLNKYDEMAS------------KYNVEYIAGGATQNS 49
+ +GNP+LD+ SS +D+ FL + D + ++N + GG+ NS
Sbjct: 35 VFAIGNPILDLVAEVPSSFLDEFFLKRGDATLATPEQMRIYSTLDQFNPTSLPGGSALNS 94
Query: 50 IRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVVGG 109
+RV Q +L+ PG+ Y+G IG D G+ +K+ G+ + STG CAV +
Sbjct: 95 VRVVQKLLRKPGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQSTGVCAVLINEK 154
Query: 110 ERSLVANLSAANCYKSEHLKKPENW-ALVEKAKYFYIAGFFLTVSPDSIQLVAEHA-AAN 167
ER+L +L A + + PE+W A FY + LT +P + VA +A
Sbjct: 155 ERTLCTHLGACGSF-----RLPEDWTTFASGALIFYATAYTLTATPKNALEVAGYAHGIP 209
Query: 168 NKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLS 227
N +F +NLSAPF E +KDA++ +L + + +FGNE E +KV E+ AL +
Sbjct: 210 NAIFTLNLSAPFCVELYKDAMQSLLLHTNILFGNEEEFAHLAKVHNLVA--AEKTALSTA 267
Query: 228 QWPKASEI-----RKRTA----------VITQGADPVVVAQ---DGK--LKKFPVIVLPK 267
A E+ R TA V+T+G +PV+ A+ DG + + V V+
Sbjct: 268 NKEHAVEVCTGALRLLTAGQNTSATKLVVMTRGHNPVIAAEQTADGTVVVHEVGVPVVAA 327
Query: 268 DKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSG 313
+K+VDTNGAGDAFVGGFL L Q K +++C+ G + +IQ G
Sbjct: 328 EKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVG 373
>pdb|1DGM|A Chain A, Crystal Structure Of Adenosine Kinase From Toxoplasma
Gondii
Length = 363
Score = 164 bits (415), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 115/346 (33%), Positives = 176/346 (50%), Gaps = 46/346 (13%)
Query: 7 LLGMGNPLLDI-----SSVVDDDFLNKYDEMAS------------KYNVEYIAGGATQNS 49
+ +GNP+LD+ SS +D+ FL + D + ++N + GG+ NS
Sbjct: 15 VFAIGNPILDLVAEVPSSFLDEFFLKRGDATLATPEQMRIYSTLDQFNPTSLPGGSALNS 74
Query: 50 IRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVVGG 109
+RV Q +L+ PG+ Y+G IG D G+ +K+ G+ + STG CAV +
Sbjct: 75 VRVVQKLLRKPGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQSTGVCAVLINEK 134
Query: 110 ERSLVANLSAANCYKSEHLKKPENW-ALVEKAKYFYIAGFFLTVSPDSIQLVAEHA-AAN 167
ER+L +L A + + PE+W A FY + LT +P + VA +A
Sbjct: 135 ERTLCTHLGACGSF-----RLPEDWTTFASGALIFYATAYTLTATPKNAFEVAGYAHGIP 189
Query: 168 NKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLS 227
N +F +NLSAPF E +KDA++ +L + + +FGNE E +KV E+ AL +
Sbjct: 190 NAIFTLNLSAPFCVELYKDAMQSLLLHTNILFGNEEEFAHLAKVHNLVA--AEKTALSTA 247
Query: 228 QWPKASEI-----RKRTA----------VITQGADPVVVAQ---DGK--LKKFPVIVLPK 267
A E+ R TA V+T+G +PV+ A+ DG + + V V+
Sbjct: 248 NKEHAVEVCTGALRLLTAGQNTGATKLVVMTRGHNPVIAAEQTADGTVVVHEVGVPVVAA 307
Query: 268 DKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSG 313
+K+VDTNGAGDAFVGGFL L Q K +++C+ G + +IQ G
Sbjct: 308 EKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVG 353
>pdb|4E3A|A Chain A, Crystal Structure Of Probable Sugar Kinase Protein From
Rhizobium Etli Cfn 42
pdb|4E3A|B Chain B, Crystal Structure Of Probable Sugar Kinase Protein From
Rhizobium Etli Cfn 42
Length = 352
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/335 (23%), Positives = 138/335 (41%), Gaps = 55/335 (16%)
Query: 7 LLGMGNPLLDISSVVDDDFLNKYDEMASKYNVEYI------------------AGGATQN 48
+L +GN ++DI S +D FL D +K I +GG+ N
Sbjct: 28 VLTVGNAIVDIISRCNDQFL--IDNQITKAAXNLIDAERAELLYSRXGPALEASGGSAGN 85
Query: 49 SIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLAGVNVHYYEDESAS---TGTCAVC 105
+ A + + G +Y G + D+ G+ + + GV HY + T +
Sbjct: 86 T---AAGVANLGGKAAYFGNVAADQLGDIFTHDIRAQGV--HYQTKPKGAFPPTARSXIF 140
Query: 106 VV-GGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYIAGFFLT--VSPDSIQLVAE 162
V GERS L A E ++ +V AK Y G+ + ++I A
Sbjct: 141 VTEDGERSXNTYLGACVELGPEDVEAD----VVADAKVTYFEGYLWDPPRAKEAILDCAR 196
Query: 163 HAAANNKVFMMNLSAPFICEFFKDALEKVLPY--MDYIFGNETEARTFSKVQGWETDDVE 220
A + + LS F + ++ + +D +F N EA + ++TDD E
Sbjct: 197 IAHQHGREXSXTLSDSFCVDRYRGEFLDLXRSGKVDIVFANRQEALSL-----YQTDDFE 251
Query: 221 EIALKLSQWPKASEI--RKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGD 278
E +++ K + + + AVI +G + ++ V + ++VDT GAGD
Sbjct: 252 EALNRIAADCKIAAVTXSENGAVILKGRE-----------RYYVNAIRIREVVDTTGAGD 300
Query: 279 AFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSG 313
F GFL Q + +E+C + GC + ++IQ+ G
Sbjct: 301 LFASGFLYGYTQGRSLEDCGKLGCLAAGIVIQQIG 335
>pdb|3H49|A Chain A, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3H49|B Chain B, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3IN1|A Chain A, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
pdb|3IN1|B Chain B, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
Length = 325
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 122/285 (42%), Gaps = 23/285 (8%)
Query: 36 YNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLAGVNVHYYEDE 95
Y +E IA ++I A + ++ T+ IGKD G+ + + + +++ + +
Sbjct: 33 YPLERIAXTTGGDAINEATIISRLGHRTALXSRIGKDAAGQFILDHCRKENIDIQSLKQD 92
Query: 96 SASTGTCAVCVV--GGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYIAGFFLTVS 153
+ + V +V GER+ V N + + +K ++A +AK +A F +
Sbjct: 93 VSIDTSINVGLVTEDGERTFVTNRNGS-LWKLNI--DDVDFARFSQAKLLSLASIFNSPL 149
Query: 154 PDSIQL--VAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKV 211
D L + A A + + P + E D E L Y+DY+F N EA+ +
Sbjct: 150 LDGKALTEIFTQAKARQXIICADXIKPRLNETLDDICE-ALSYVDYLFPNFAEAKLLT-- 206
Query: 212 QGWET-DDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKL 270
G ET D++ + L +T VI G D + + K P +
Sbjct: 207 -GKETLDEIADCFLACGV---------KTVVIKTGKDGCFIKRGDXTXKVPAV--AGITA 254
Query: 271 VDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSGCT 315
+DT GAGD F GF++ L++ K + EC R T+ + + G T
Sbjct: 255 IDTIGAGDNFASGFIAALLEGKNLRECARFANATAAISVLSVGAT 299
>pdb|3UBO|A Chain A, The Crystal Structure Of Adenosine Kinase From
Sinorhizobium Meliloti
pdb|3UBO|B Chain B, The Crystal Structure Of Adenosine Kinase From
Sinorhizobium Meliloti
Length = 354
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/331 (23%), Positives = 139/331 (41%), Gaps = 47/331 (14%)
Query: 7 LLGMGNPLLDISSVVDDDFLNKYDEMASKYNV------EYI----------AGGATQNSI 50
+L +GN ++DI + DD FL + + N+ E + +GG+ N+
Sbjct: 8 VLTIGNAIVDIIARCDDSFLEENGIIKGAXNLINADRAELLYSRXGPAVEASGGSAGNT- 66
Query: 51 RVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLAGVNVHYYE-DESASTGTCAVCVV-G 108
A + + G +Y G + D+ GE + + GV+ D T + V
Sbjct: 67 --AAGVASLGGRAAYFGKVADDQLGEIFTHDIRAQGVHFQTKPLDGHPPTARSXIFVTED 124
Query: 109 GERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYIAGFFLT--VSPDSIQLVAEHAAA 166
GERS L A E ++ +V ++K Y G+ + D+I+ A A A
Sbjct: 125 GERSXNTYLGACVELGPEDVEDD----VVAQSKVTYFEGYLWDPPRAKDAIREAARIAHA 180
Query: 167 NNKVFMMNLSAPFICEFFKDALEKVLP--YMDYIFGNETEARTFSKVQGWETDDVEEIAL 224
+ + LS F ++ ++ +D +F N EA +ET+D +
Sbjct: 181 HGRETAXTLSDSFCVHRYRSEFLELXRSGTVDIVFANRQEALAL-----YETEDFDRALE 235
Query: 225 KLSQWPK--ASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVG 282
L++ K A + + +V+ +GA+ V V VL +++VDT GAGD +
Sbjct: 236 LLARDCKLAAVTLSEEGSVVVRGAERVRVGAS---------VL--EQVVDTTGAGDLYAA 284
Query: 283 GFLSQLVQEKPIEECVRAGCYTSHVIIQRSG 313
GFL + +EEC + G + ++I + G
Sbjct: 285 GFLFGYTSGRSLEECSKLGNLAAGIVIGQIG 315
>pdb|1RK2|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|B Chain B, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|C Chain C, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|D Chain D, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RKA|A Chain A, The Apo Form Of E. Coli Ribokinase
pdb|1RKS|A Chain A, E. Coli Ribokinase In Complex With D-Ribose
pdb|1GQT|A Chain A, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|B Chain B, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|C Chain C, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|D Chain D, Activation Of Ribokinase By Monovalent Cations
pdb|1RKD|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp
Length = 309
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 111/260 (42%), Gaps = 25/260 (9%)
Query: 64 SYIGCIGKDKFGEEMKKNSKLAGVNVHYYE---DESASTGTCAVCVVGGERSLVANLSAA 120
++I C G D GE +++ +LA N+ + STG + V G +++ + A
Sbjct: 59 AFIACTGDDSIGESVRQ--QLATDNIDITPVSVIKGESTGVALIFVNGEGENVIGIHAGA 116
Query: 121 NCYKSEHLKKPENWALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFI 180
N S L + + + + L +S+ A+ A N + +N P
Sbjct: 117 NAALSPALVEAQRERIANASALL----MQLESPLESVMAAAKIAHQNKTIVALN---PAP 169
Query: 181 CEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRKRTA 240
D L L +D I NETEA + ++ +D + A L E RT
Sbjct: 170 ARELPDEL---LALVDIITPNETEAEKLTGIRVENDEDAAKAAQVLH------EKGIRTV 220
Query: 241 VITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRA 300
+IT G+ V + +G+ ++ P + + VDT AGD F G ++ L++EKP+ E +R
Sbjct: 221 LITLGSRGVWASVNGEGQRVPGF---RVQAVDTIAAGDTFNGALITALLEEKPLPEAIRF 277
Query: 301 GCYTSHVIIQRSGCTYPEKP 320
+ + + R G P P
Sbjct: 278 AHAAAAIAVTRKGA-QPSVP 296
>pdb|2C49|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
pdb|2C49|B Chain B, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
pdb|2C4E|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
Length = 302
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 99/227 (43%), Gaps = 36/227 (15%)
Query: 108 GGERSLV-ANLSAANCYKSEHLKKPENWALVEKAK---YFYIAG---FFLTVSPDSIQLV 160
G ER L +++ + Y SE + P+ W +K F++ G + ++P +
Sbjct: 73 GYERYLKNLDINISKLYYSEEEETPKAWIFTDKDNNQITFFLWGAAKHYKELNPPNFNTE 132
Query: 161 AEHAAANNKVFMM--------NLSAPF-----ICEFFKDALEKVLPYMDYIFGNETEART 207
H A + F + N F + ++ K+ L +++ + +++F N+ E
Sbjct: 133 IVHIATGDPEFNLKCAKKAYGNNLVSFDPGQDLPQYSKEMLLEIIEHTNFLFMNKHEFER 192
Query: 208 FSKVQGWETDDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPK 267
S + +E DD E R ++T+G+ V+ K KK + +
Sbjct: 193 ASNLLNFEIDDYLE--------------RVDALIVTKGSKGSVIYT--KDKKIEIPCIKA 236
Query: 268 DKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSGC 314
K++D GAGD++ GFLS V+ +E+C G T+ +++ GC
Sbjct: 237 GKVIDPTGAGDSYRAGFLSAYVKGYDLEKCGLIGAATASFVVEAKGC 283
>pdb|3LHX|A Chain A, Crystal Structure Of A Ketodeoxygluconokinase (Kdgk) From
Shigella Flexneri
pdb|3LHX|B Chain B, Crystal Structure Of A Ketodeoxygluconokinase (Kdgk) From
Shigella Flexneri
Length = 319
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 72/307 (23%), Positives = 124/307 (40%), Gaps = 58/307 (18%)
Query: 43 GGATQN-SIRVAQWMLQIPGATSYIGCIGKDKFGEE---------------MKKNSKLAG 86
GG T N S+ +A+ + Y+ +G D F ++ + ++L G
Sbjct: 29 GGDTLNTSVYIARQVDPAALTVHYVTALGTDSFSQQXLDAWHGENVDTSLTQRXENRLPG 88
Query: 87 VNVHYYEDESASTGTCAVCVVGGERSLV--ANLSAANCYKSEHLKKPENWALVEKA---K 141
+ +Y E +S GER+ N +AA + L ++ A+ E+
Sbjct: 89 L--YYIETDST-----------GERTFYYWRNEAAAKFW----LASEQSAAICEELANFD 131
Query: 142 YFYIAGFFLTV-SPDS----IQLVAEHAAANNKVFMMNLSAPFIC---EFFKDALEKVLP 193
Y Y++G L + SP S + L+ E A KV N P + E + ++ L
Sbjct: 132 YLYLSGISLAILSPTSREKLLSLLRECRAKGGKVIFDNNYRPRLWASKEETQQVYQQXLE 191
Query: 194 YMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQ 253
D F + W VE++ + + V+ +GAD +V+
Sbjct: 192 CTDIAFLTLDDEDAL-----WGQQPVEDVI------ARTHNAGVKEVVVKRGADSCLVSI 240
Query: 254 DGK-LKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRS 312
G+ L P + LPK+K++DT AGD+F G+L+ + E + G T+ +IQ
Sbjct: 241 AGEALVDVPAVKLPKEKVIDTTAAGDSFSAGYLAVRLTGGSAENAAKRGHLTASTVIQYR 300
Query: 313 GCTYPEK 319
G P +
Sbjct: 301 GAIIPRE 307
>pdb|2FV7|A Chain A, Crystal Structure Of Human Ribokinase
pdb|2FV7|B Chain B, Crystal Structure Of Human Ribokinase
Length = 331
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 119/268 (44%), Gaps = 27/268 (10%)
Query: 63 TSYIGCIGKDKFGEEMKKNSKLAGVNVHY-YEDESASTGTCAVCVVGGERSLVANLSAAN 121
TS + +GKD FG + +N K ++ + Y+ + A+TGT ++ V ++++ ++ AN
Sbjct: 78 TSMVCKVGKDSFGNDYIENLKQNDISTEFTYQTKDAATGTASIIVNNEGQNIIVIVAGAN 137
Query: 122 CY-KSEHLKKPENWALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFI 180
+E L+ N ++ +AK L ++P + L A A + V + AP I
Sbjct: 138 LLLNTEDLRAAAN--VISRAKVMVCQ---LEITP-ATSLEALTMARRSGVKTLFNPAPAI 191
Query: 181 CEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRKRTA 240
D + D NE+EA + + D E AL L + ++
Sbjct: 192 ----ADLDPQFYTLSDVFCCNESEAEILTGLTVGSAADAGEAALVL--LKRGCQV----V 241
Query: 241 VITQGADPVVVAQ--DGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLV--QEKPIEE 296
+IT GA+ VV + + K P K K VDT GAGD+FVG L +E+
Sbjct: 242 IITLGAEGCVVLSQTEPEPKHIPT---EKVKAVDTTGAGDSFVGALAFYLAYYPNLSLED 298
Query: 297 CVRAGCYTSHVIIQRSGC--TYPEKPEF 322
+ + + V +Q +G +YP K +
Sbjct: 299 MLNRSNFIAAVSVQAAGTQSSYPYKKDL 326
>pdb|1TZ6|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
pdb|1TZ6|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
Length = 339
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 111/256 (43%), Gaps = 33/256 (12%)
Query: 43 GGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTC 102
GGA+ N V + ++ G +IGC+G D G +++ + GV+V + ++ T
Sbjct: 50 GGASAN---VGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTS-- 104
Query: 103 AVCVVG----GERSLVANLS-AANCYKSEHLKKPENWALVEKAKYFYIAGFFLTVSPDSI 157
AV +V GERS + A+ Y S P++ + ++FY + LT P
Sbjct: 105 AVLIVNLTADGERSFTYLVHPGADTYVS-----PQDLPPFRQYEWFYFSSIGLTDRP--- 156
Query: 158 QLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETD 217
A A M + F + K+ D I + + + D
Sbjct: 157 ---AREACLEGARRMREAGGYVL--FDVNLRSKMWGNTDEIPELIARSAALASICKVSAD 211
Query: 218 DVEEIALKLSQWPKAS----EIRKRTAVITQGAD-PVVVAQDGKLKKFPVIVLPKDKLVD 272
++ +++ S W A ++ T +I+ GAD +++ +G+ FP P+ +VD
Sbjct: 212 ELCQLS-GASHWQDARYYLRDLGCDTTIISLGADGALLITAEGEFH-FPA---PRVDVVD 266
Query: 273 TNGAGDAFVGGFLSQL 288
T GAGDAFVGG L L
Sbjct: 267 TTGAGDAFVGGLLFTL 282
>pdb|1TYY|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TYY|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TZ3|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
pdb|1TZ3|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
Length = 339
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 115/261 (44%), Gaps = 43/261 (16%)
Query: 43 GGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTC 102
GGA+ N V + ++ G +IGC+G D G +++ + GV+V + ++ T
Sbjct: 50 GGASAN---VGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTS-- 104
Query: 103 AVCVVG----GERSLVANLS-AANCYKSEHLKKPENWALVEKAKYFYIAGFFLTVSPDSI 157
AV +V GERS + A+ Y S P++ + ++FY + LT P +
Sbjct: 105 AVLIVNLTADGERSFTYLVHPGADTYVS-----PQDLPPFRQYEWFYFSSIGLTDRP-AR 158
Query: 158 QLVAEHA-----AANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQ 212
+ E A A +F +NL + K D I + + +
Sbjct: 159 EACLEGARRXREAGGYVLFDVNLRS------------KXWGNTDEIPELIARSAALASIC 206
Query: 213 GWETDDVEEIALKLSQWPKAS----EIRKRTAVITQGAD-PVVVAQDGKLKKFPVIVLPK 267
D++ +++ S W A ++ T +I+ GAD +++ +G+ FP P+
Sbjct: 207 KVSADELCQLS-GASHWQDARYYLRDLGCDTTIISLGADGALLITAEGEFH-FPA---PR 261
Query: 268 DKLVDTNGAGDAFVGGFLSQL 288
+VDT GAGDAFVGG L L
Sbjct: 262 VDVVDTTGAGDAFVGGLLFTL 282
>pdb|1V19|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V19|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V1A|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1A|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1B|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1S|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|E Chain E, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|F Chain F, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
Length = 309
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 117/280 (41%), Gaps = 41/280 (14%)
Query: 32 MASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLAGVNVHY 91
+ K +E GGA N VA + ++ ++G +G+D+ G +++ + GV++ +
Sbjct: 22 LRGKRLLEVYVGGAEVN---VAVALARLGVKVGFVGRVGEDELGAMVEERLRAEGVDLTH 78
Query: 92 YEDESASTGTC--AVCVVGGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYIAGFF 149
+ TG +G R +A + P+ +E ++ +++G
Sbjct: 79 FRRAPGFTGLYLREYLPLGQGRVFYYRKGSAGSALAPGAFDPDY---LEGVRFLHLSGIT 135
Query: 150 LTVSPDS--IQLVAEHAAANNKV-------FMMNLSAPFICEFFKDALEKVLPYMDYIFG 200
+SP++ L A A V + L +P E + LE+ LP +D +F
Sbjct: 136 PALSPEARAFSLWAMEEAKRRGVRVSLDVNYRQTLWSP---EEARGFLERALPGVDLLFL 192
Query: 201 NETEART-FSKVQGWETDDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKK 259
+E EA F +V E AL+ P+ V+ +GA DG+ +
Sbjct: 193 SEEEAELLFGRV---------EEALRALSAPEV--------VLKRGAKGAWAFVDGRRVE 235
Query: 260 FPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVR 299
+ + VD GAGDAF G+L+ V P+EE +R
Sbjct: 236 GSAFAV---EAVDPVGAGDAFAAGYLAGAVWGLPVEERLR 272
>pdb|2NWH|A Chain A, Carbohydrate Kinase From Agrobacterium Tumefaciens
Length = 317
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 62/134 (46%), Gaps = 23/134 (17%)
Query: 188 LEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRK---RTAVITQ 244
L+ L +D +F NE EAR + E A + WP +RK V+T+
Sbjct: 176 LKAALGDIDILFMNEAEARALTG----------ETAENVRDWPNI--LRKAGLSGGVVTR 223
Query: 245 GADPVVVAQDGKLKKF---PVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAG 301
GA VV A +G K P+I ++ D GAGDA G+L+ + + K I E +R G
Sbjct: 224 GASEVV-AFNGTEKAILHPPLI----REVKDVTGAGDAMASGYLAAIAEGKTIREALRQG 278
Query: 302 CYTSHVIIQRSGCT 315
+ + +Q S T
Sbjct: 279 AAAAAITVQSSFAT 292
>pdb|1VM7|A Chain A, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga
Maritima At 2.15 A Resolution
pdb|1VM7|B Chain B, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga
Maritima At 2.15 A Resolution
Length = 311
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 59/135 (43%), Gaps = 11/135 (8%)
Query: 189 EKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRKRTAVITQGADP 248
E++ Y+DY+ NE E SK E VE+ A K E+ + ++ G
Sbjct: 178 EEIFQYLDYLTPNEKEIEALSKDFFGEFLTVEKAAEKFL------ELGVKNVIVKLGDKG 231
Query: 249 VVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVI 308
V++ + K FP K K VDT AGD F G F L + K EE V G + +
Sbjct: 232 VLLVNKNEKKHFPTF---KVKAVDTTAAGDVFNGAFAVALSEGKNPEEAVIFGTAAAAIS 288
Query: 309 IQRSGC--TYPEKPE 321
+ R G + P + E
Sbjct: 289 VTRLGAQSSIPAREE 303
>pdb|3Q1Y|A Chain A, Allosteric Regulation By Lysine Residue: A Novel
Anion-Hole Formation In The Ribokinase Family
Length = 320
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 241 VITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVR- 299
V++ GA + A +GKL + ++ PK + + GAGD FVG F++ L PI E ++
Sbjct: 219 VVSLGAKGSICAHNGKLYQ---VIPPKVQERNDTGAGDVFVGAFIAGLAMNMPITETLKV 275
Query: 300 -AGCYTSHVIIQRS 312
GC S V+ Q S
Sbjct: 276 ATGCSASAVMQQDS 289
>pdb|3HIC|A Chain A, The Crystal Structure Of Phosphofructokinase(Lin2199)from
Listeria Innocua
pdb|3IE7|A Chain A, The Crystal Structure Of Phosphofructokinase (Lin2199)
From Listeria Innocua In Complex With Atp At 1.6a
pdb|3JUL|A Chain A, Crystal Structure Of Listeria Innocua
D-Tagatose-6-Phosphate Kinase Bound With Substrate
Length = 320
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 241 VITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVR- 299
V++ GA + A +GKL + ++ PK + + GAGD FVG F++ L PI E ++
Sbjct: 219 VVSLGAKGSICAHNGKLYQ---VIPPKVQERNDTGAGDVFVGAFIAGLAXNXPITETLKV 275
Query: 300 -AGCYTSHVIIQRS 312
GC S V Q S
Sbjct: 276 ATGCSASKVXQQDS 289
>pdb|3B3L|A Chain A, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
pdb|3B3L|B Chain B, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
pdb|3B3L|C Chain C, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
pdb|3B3L|D Chain D, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
Length = 298
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/311 (21%), Positives = 131/311 (42%), Gaps = 35/311 (11%)
Query: 3 QEGILLGMGNPLLDISSVVDDDFLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGA 62
+E +L +G +LD+ S+VD K D + + GG NS V L + GA
Sbjct: 2 EEKQILCVGLVVLDVISLVDK--YPKEDSEIRCLSQRWQRGGNASNSCTV----LSLLGA 55
Query: 63 -TSYIGCIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVVG---GERSLVANLS 118
+++G + + + + + GV+V +S + C++ G R++V + +
Sbjct: 56 PCAFMGSMAPGHVADFLVADFRRRGVDVSQVAWQSKGDTPSSCCIINNSNGNRTIVLHDT 115
Query: 119 AANCYKSEHLKKPENWALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAP 178
+ + +K + + + K+ +I G + +Q + H + +S
Sbjct: 116 SLPDVSATDFEKVD----LTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQKIRVSVE 171
Query: 179 FICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRKR 238
E ++ L ++ Y D +F ++ A+ G+++ EE L +RK
Sbjct: 172 V--EKPREELFQLFGYGDVVFVSKDVAKHL----GFQS--AEEALRGLY-----GRVRKG 218
Query: 239 TAVIT----QGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPI 294
++ +GAD + DGKL P ++VDT GAGD F + L Q + +
Sbjct: 219 AVLVCAWAEEGAD--ALGPDGKL--LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSV 274
Query: 295 EECVRAGCYTS 305
+E +R GC +
Sbjct: 275 QEALRFGCQVA 285
>pdb|3NBV|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With Amp-Pnp
And Fructose
pdb|3NBV|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With Amp-Pnp
And Fructose
pdb|3NBW|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrazole Compound
pdb|3NBW|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrazole Compound
pdb|3NC2|A Chain A, X-Ray Structure Of Ketohexokinase With A Quinazoline
pdb|3NC2|B Chain B, X-Ray Structure Of Ketohexokinase With A Quinazoline
pdb|3NC9|A Chain A, X-Ray Structure Of Ketohexokinase Complexed With An
Indazole Compound
pdb|3NC9|B Chain B, X-Ray Structure Of Ketohexokinase Complexed With An
Indazole Compound
pdb|3NCA|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A Thieno
Pyridinol Compound
pdb|3NCA|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A Thieno
Pyridinol Compound
pdb|3RO4|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With An
Indazole Compound Derivative
pdb|3RO4|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With An
Indazole Compound Derivative
pdb|3Q92|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 1
pdb|3Q92|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 1
pdb|3QA2|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 2
pdb|3QA2|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 2
pdb|3QAI|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 3
pdb|3QAI|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 3
Length = 313
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/307 (21%), Positives = 129/307 (42%), Gaps = 35/307 (11%)
Query: 7 LLGMGNPLLDISSVVDDDFLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGA-TSY 65
+L +G +LD+ S+VD K D + + GG NS V L + GA ++
Sbjct: 21 ILCVGLVVLDVISLVDK--YPKEDSEIRCLSQRWQRGGNASNSCTV----LSLLGAPCAF 74
Query: 66 IGCIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVVG---GERSLVANLSAANC 122
+G + + + + + GV+V +S + C++ G R++V + ++
Sbjct: 75 MGSMAPGHVADFLVADFRRRGVDVSQVAWQSKGDTPSSCCIINNSNGNRTIVLHDTSLPD 134
Query: 123 YKSEHLKKPENWALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICE 182
+ +K + + + K+ +I G + +Q + H + +S E
Sbjct: 135 VSATDFEKVD----LTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQKIRVSVEV--E 188
Query: 183 FFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRKRTAVI 242
++ L ++ Y D +F ++ A+ G+++ EE L +RK ++
Sbjct: 189 KPREELFQLFGYGDVVFVSKDVAKHL----GFQS--AEEALRGLY-----GRVRKGAVLV 237
Query: 243 T----QGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECV 298
+GAD + DGKL P ++VDT GAGD F + L Q + ++E +
Sbjct: 238 CAWAEEGAD--ALGPDGKL--LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEAL 293
Query: 299 RAGCYTS 305
R GC +
Sbjct: 294 RFGCQVA 300
>pdb|4DU5|A Chain A, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|B Chain B, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|C Chain C, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|D Chain D, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
Length = 336
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 81/204 (39%), Gaps = 30/204 (14%)
Query: 132 ENWALVEKAKYFYIAGFFLTVSPDSIQLVAE-----HAAANNKVFMMNLSAPFIC--EFF 184
E W L A++ + G F +S ++ + AA + F NL E
Sbjct: 147 EAWLL--SARHLHATGVFPAISATTLPAARKTXDLXRAAGRSVSFDPNLRPTLWATPELX 204
Query: 185 KDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRKRTAVITQ 244
+DA+ + D++ E R + ET E +A Q + + V+
Sbjct: 205 RDAINDLATRADWVLPGXEEGRFLTG----ETTP-EGVARFYRQ------LGAKLVVVKL 253
Query: 245 GADPVVV---AQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAG 301
GA+ A G++ FPV ++VDT GAGD F G +S L+ + E V+ G
Sbjct: 254 GAEGAYFDGEAGSGRVAGFPVA-----EVVDTVGAGDGFAVGVISALLDGLGVPEAVKRG 308
Query: 302 CYTSHVIIQRSGCT--YPEKPEFN 323
+ +Q G + P + E N
Sbjct: 309 AWIGARAVQVLGDSEGLPTRAELN 332
>pdb|3B1N|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Mizoribine
pdb|3B1N|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Mizoribine
pdb|3B1O|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Ligand-Free Form
pdb|3B1O|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Ligand-Free Form
pdb|3B1P|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Inosine
pdb|3B1Q|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
Length = 326
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 53/141 (37%), Gaps = 28/141 (19%)
Query: 152 VSPDSIQLVAEHAAANNKVFMMNLSAPFICE-------FFKDALEKVLPYMDYIFGNETE 204
V PD Q + +H + PFI + F L + + YI N+ E
Sbjct: 141 VGPDGFQGMVQHTEE-----LAQAGVPFIFDPGQGLPLFDGATLRRSIELATYIAVNDYE 195
Query: 205 ARTFSKVQGWETDDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIV 264
A+ GW D++ R + +IT+G + ++ P +
Sbjct: 196 AKLVCDKTGWSEDEIAS--------------RVQALIITRGEHGATIRHRDGTEQIPAV- 240
Query: 265 LPKDKLVDTNGAGDAFVGGFL 285
++++D G GDAF GG L
Sbjct: 241 -RAERVIDPTGCGDAFRGGLL 260
>pdb|3B1R|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
Length = 320
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 53/141 (37%), Gaps = 28/141 (19%)
Query: 152 VSPDSIQLVAEHAAANNKVFMMNLSAPFICE-------FFKDALEKVLPYMDYIFGNETE 204
V PD Q + +H + PFI + F L + + YI N+ E
Sbjct: 149 VGPDGFQGMVQHTEE-----LAQAGVPFIFDPGQGLPLFDGATLRRSIELATYIAVNDYE 203
Query: 205 ARTFSKVQGWETDDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIV 264
A+ GW D++ R + +IT+G + ++ P +
Sbjct: 204 AKLVCDKTGWSEDEIAS--------------RVQALIITRGEHGATIRHRDGTEQIPAVR 249
Query: 265 LPKDKLVDTNGAGDAFVGGFL 285
++++D G GDAF GG L
Sbjct: 250 --AERVIDPTGCGDAFRGGLL 268
>pdb|3KD6|A Chain A, Crystal Structure Of Nucleoside Kinase From Chlorobium
Tepidum In Complex With Amp
pdb|3KD6|B Chain B, Crystal Structure Of Nucleoside Kinase From Chlorobium
Tepidum In Complex With Amp
Length = 313
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 13/103 (12%)
Query: 188 LEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRKRTAVITQGAD 247
L+KVL +D N++EAR S + + V+ + PK T +I +G
Sbjct: 162 LKKVLARVDVFIVNDSEARLLSG----DPNLVKTARIIREXGPK-------TLIIKKGEH 210
Query: 248 PVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQ 290
++ D + F P + + D GAGD F GGF+ L +
Sbjct: 211 GALLFTDNGI--FAAPAFPLESIYDPTGAGDTFAGGFIGHLAR 251
>pdb|2QHP|A Chain A, Crystal Structure Of Fructokinase (Np_810670.1) From
Bacteroides Thetaiotaomicron Vpi-5482 At 1.80 A
Resolution
Length = 296
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 12/152 (7%)
Query: 169 KVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQ 228
K+F +NL F + K+ L + + + N+ E T S+ G+ D+++
Sbjct: 149 KIFDINLRQDF---YTKEVLRESFKRCNILKINDEELVTISRXFGYPGIDLQD-----KC 200
Query: 229 WPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQL 288
W ++ + ++T G + V G + PK + DT GAGD+F F + +
Sbjct: 201 WILLAKYNLKXLILTCGINGSYVFTPGVVS---FQETPKVPVADTVGAGDSFTAAFCASI 257
Query: 289 VQEKPIEECVRAGCYTSHVIIQRSGCTYPEKP 320
+ K + E + S + +SG PE P
Sbjct: 258 LNGKSVPEAHKLAVEVSAYVCTQSGAX-PELP 288
>pdb|3BF5|A Chain A, Crystal Structure Of Putative Ribokinase (10640157) From
Thermoplasma Acidophilum At 1.91 A Resolution
pdb|3BF5|B Chain B, Crystal Structure Of Putative Ribokinase (10640157) From
Thermoplasma Acidophilum At 1.91 A Resolution
Length = 306
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 50/130 (38%), Gaps = 23/130 (17%)
Query: 180 ICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRKRT 239
I ++ KD L+K N+ E R F + G + PK T
Sbjct: 171 IHKYSKDELKKFHEISYXSIFNDHEYRVFREXTGLSS-------------PKV------T 211
Query: 240 AVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVR 299
++T G + DGK FP I P DT GAGD+F G L + IE+
Sbjct: 212 TIVTNGERGSSLFXDGKKYDFPAI--PSSG--DTVGAGDSFRAGLYLALYNRRSIEKGXI 267
Query: 300 AGCYTSHVII 309
G +H +I
Sbjct: 268 YGTIIAHHVI 277
>pdb|3RY7|A Chain A, Crystal Sructure Of Sa239
Length = 304
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 75/316 (23%), Positives = 128/316 (40%), Gaps = 36/316 (11%)
Query: 10 MGNPLLDISSVVDDDFLN--KYDEMASKYNVEYIA---GGATQNSIRVAQWMLQIPGATS 64
M N ++ + S D FL +Y + +VE GG + +A +Q T+
Sbjct: 1 MTNKVVILGSTNVDQFLTVERYAQPGETLHVEEAQKAFGGGKGANQAIATARMQ--ADTT 58
Query: 65 YIGCIGKDKFGEEMKKNSKLAGVNVHYY-EDESASTGTCAVCVVGGERSLVANLSAANCY 123
+I IG D + + ++ K+A ++ Y + A TG + V ++ + AN
Sbjct: 59 FITKIGTDGVADFILEDFKVAHIDTSYIIKTAEAKTGQAFITVNAEGQNTIYVYGGANMT 118
Query: 124 KSEHLKKPENWALVEKAKYFYIAGFF----LTVSPDSIQLVAEHAAANNKVFMMNLSAPF 179
+ PE+ V AK I F L V +I E A A+ ++N AP
Sbjct: 119 MT-----PED---VINAKDAIINADFVVAQLEVPIPAIISAFEIAKAHGVTTVLN-PAPA 169
Query: 180 ICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRKRT 239
K ++L +D I NETEA S ++ +++ A I +T
Sbjct: 170 -----KALPNELLSLIDIIVPNETEAELLSGIKVTNEQSMKDNANYFL------SIGIKT 218
Query: 240 AVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKP-IEECV 298
+IT G A + + K +DT AGD F+G F+S+L + + + + +
Sbjct: 219 VLITLGKQGTYFATKNQSQHIEAY---KVNAIDTTAAGDTFIGAFVSRLNKSQDNLADAI 275
Query: 299 RAGCYTSHVIIQRSGC 314
G S + +Q+ G
Sbjct: 276 DFGNKASSLTVQKHGA 291
>pdb|2HQQ|A Chain A, Crystal Structure Of Human Ketohexokinase Complexed To
Different Sugar Molecules
pdb|2HW1|A Chain A, Crystal Structure Of Human Ketohexokinase Complexed To
Different Sugar Molecules
Length = 298
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 244 QGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGC 302
+GAD + DGKL P ++VDT GAGD F + L Q + ++E +R GC
Sbjct: 228 EGAD--ALGPDGKL--LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGC 282
>pdb|2HLZ|A Chain A, Crystal Structure Of Human Ketohexokinase (Casp Target)
pdb|2HLZ|B Chain B, Crystal Structure Of Human Ketohexokinase (Casp Target)
pdb|2HLZ|C Chain C, Crystal Structure Of Human Ketohexokinase (Casp Target)
pdb|2HLZ|D Chain D, Crystal Structure Of Human Ketohexokinase (Casp Target)
Length = 312
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 244 QGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGC 302
+GAD + DGKL P ++VDT GAGD F + L Q + ++E +R GC
Sbjct: 242 EGAD--ALGPDGKL--LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGC 296
>pdb|2PKF|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase (Apo)
pdb|2PKF|B Chain B, Crystal Structure Of M Tuberculosis Adenosine Kinase (Apo)
pdb|2PKK|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase
Complexed With 2- Fluro Adenosine
pdb|2PKN|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase
Complexed With Amp-Pcp (Non-Hydrolyzable Atp Analog)
pdb|2PKM|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase
Complexed With Adenosine
Length = 334
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 17/119 (14%)
Query: 197 YIFGNETEARTFSKVQGW-ETDDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDG 255
Y+F N+ E GW E D + +I L++ T + +G D +V DG
Sbjct: 201 YLFTNDYEWDLLLSKTGWSEADVMAQIDLRV------------TTLGPKGVD--LVEPDG 246
Query: 256 KLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSGC 314
V V+P+ D G GDAF GFL+ +E + G + ++++ +G
Sbjct: 247 T--TIHVGVVPETSQTDPTGVGDAFRAGFLTGRSAGLGLERSAQLGSLVAVLVLESTGT 303
>pdb|3KZH|A Chain A, Crystal Structure Of A Putative Sugar Kinase From
Clostridium Perfringens
pdb|3KZH|B Chain B, Crystal Structure Of A Putative Sugar Kinase From
Clostridium Perfringens
Length = 328
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 65/293 (22%), Positives = 114/293 (38%), Gaps = 54/293 (18%)
Query: 43 GGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLAGVNVHYYEDES-----A 97
GG +N +A+ ++ T++ +G D+ G+ + ++SK G Y+ D+S
Sbjct: 42 GGVCRN---IAENXARVGVNTNFXSILGNDEHGKSIVEHSKKIG----YHXDDSXVIEGG 94
Query: 98 STGT-CAVCVVGGER-SLVANLSAANCYKSEHLKKPENWALVEKAKYFY-------IAGF 148
ST T A+ GE S +A+ + ++ + + E A+Y I +
Sbjct: 95 STPTYLAILDENGEXVSAIADXKSIGAXNTDFIDSKRE--IFENAEYTVLDSDNPEIXEY 152
Query: 149 FLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTF 208
L D + + +A A ++ KD + P N EA
Sbjct: 153 LLKNFKDKTNFILDPVSAE--------KASWVKHLIKD-FHTIKP-------NRHEAEIL 196
Query: 209 SKVQGWETDDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQD---GKLKKFPVIVL 265
+ +TDD+ +K S + I+K I+ AD + GK+K V V
Sbjct: 197 AGFPITDTDDL----IKASNYFLGLGIKK--VFISLDADGIFYNDGVSCGKIKATEVDVK 250
Query: 266 PKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSGCTYPE 318
+ GAGD+FV G + PIE+ V+ S++ I +P+
Sbjct: 251 ------NVTGAGDSFVAGLGYGYXNKXPIEDIVKFAXTXSNITISHEETIHPD 297
>pdb|3HJ6|A Chain A, Structure Of Halothermothrix Orenii Fructokinase (Frk)
pdb|3HJ6|B Chain B, Structure Of Halothermothrix Orenii Fructokinase (Frk)
Length = 327
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 234 EIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKP 293
E+ + ++T G + V+ + ++ + P + VD GAGDAF GF+ L+
Sbjct: 234 ELGVKAVILTLGEEGVIASDGEEIIRIPAF---SEDAVDVTGAGDAFWSGFICGLLDGYT 290
Query: 294 IEECVRAGCYTSHVIIQRSGCTYP 317
++ ++ G + I+ G P
Sbjct: 291 VKRSIKLGNGVAAFKIRGVGALSP 314
>pdb|3IQ0|A Chain A, Crystal Structure Of A Putative Ribokinase Ii In Complex
With Atp And Mg+2 From E.Coli
pdb|3IQ0|B Chain B, Crystal Structure Of A Putative Ribokinase Ii In Complex
With Atp And Mg+2 From E.Coli
pdb|3K9E|A Chain A, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
From E.Coli
pdb|3K9E|B Chain B, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
From E.Coli
Length = 330
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 90/235 (38%), Gaps = 37/235 (15%)
Query: 66 IGCIGKDKFGEEMKKNSKLAGVNVHYYED-ESASTGTCAVCVV-GGERSLVANLSAANCY 123
I C+G D FG+ GV++ +TG+ V G+R + N+ A C
Sbjct: 57 ISCVGNDGFGDINIHRLAADGVDIRGISVLPLEATGSAFVTYHNSGDRDFIFNIKNAACG 116
Query: 124 KSEHLKKPENWALVEKAKYFYIAG--FFLTVSPDSIQLVAEHAAANNKV--FMMNLSAPF 179
K EN +++ +F+I G F D+++ AN V F N+
Sbjct: 117 KLSAQHVDEN--ILKDCTHFHIXGSSLFSFHXVDAVKKAVTIVKANGGVISFDPNIRKEX 174
Query: 180 I-CEFFKDALEKVLPYMDYIFGNETEARTFS-------KVQGWETDDVEEIALKLSQWPK 231
+ +DAL VL D +E E S + G+ + V+E+ +K
Sbjct: 175 LDIPEXRDALHFVLELTDIYXPSEGEVLLLSPHSTPERAIAGFLEEGVKEVIVKRGN--- 231
Query: 232 ASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLS 286
QGA + ++ +PV + VD GAGD F G +++
Sbjct: 232 ------------QGASYYSANEQFHVESYPV------EEVDPTGAGDCFGGAWIA 268
>pdb|2V78|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2V78|B Chain B, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2V78|C Chain C, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2VAR|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
pdb|2VAR|B Chain B, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
pdb|2VAR|C Chain C, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
Length = 313
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 272 DTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSG 313
D GAGDA G F+S +Q K IE + G S ++I G
Sbjct: 252 DPTGAGDAMAGTFVSLYLQGKDIEYSLAHGIAASTLVITVRG 293
>pdb|2AJR|A Chain A, Crystal Structure Of Possible 1-Phosphofructokinase (Ec
2.7.1.56) (Tm0828) From Thermotoga Maritima At 2.46 A
Resolution
pdb|2AJR|B Chain B, Crystal Structure Of Possible 1-Phosphofructokinase (Ec
2.7.1.56) (Tm0828) From Thermotoga Maritima At 2.46 A
Resolution
Length = 331
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 12 NPLLDISSVVDDDFLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPG-ATSYIGCIG 70
NP LD ++D +N+ + + GG N + +A L +P AT ++G
Sbjct: 20 NPALDREIFIEDFQVNRLYRINDLSKTQXSPGGKGIN-VSIALSKLGVPSVATGFVGGYX 78
Query: 71 KDKFGEEMKKNSKLAGVNVHYYEDES 96
EE++K SKL N Y E E+
Sbjct: 79 GKILVEELRKISKLITTNFVYVEGET 104
>pdb|3PL2|A Chain A, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|B Chain B, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|C Chain C, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|D Chain D, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
Length = 319
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 240 AVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVR 299
A++ QG V + + P + +++ GAGDAF G L+ E P+E+ +R
Sbjct: 230 AIVKQGPKGVXAXTKDETVEVPPFFV---DVINGLGAGDAFGGALCHGLLSEWPLEKVLR 286
Query: 300 AGCYTSHVIIQRSGCT 315
++ R C+
Sbjct: 287 FANTAGALVASRLECS 302
>pdb|3I3Y|A Chain A, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|B Chain B, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|C Chain C, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|D Chain D, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3IKH|A Chain A, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|B Chain B, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|C Chain C, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|D Chain D, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
Length = 299
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 238 RTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAF 280
+T VITQGA + Q+G+ + P + P + L DT GAGD F
Sbjct: 197 KTLVITQGAAGAWLVQEGQRQFCPAV--PAEAL-DTTGAGDTF 236
>pdb|3LJS|A Chain A, Crystal Structure Of Fructokinase From Xylella Fastidiosa
pdb|3LJS|B Chain B, Crystal Structure Of Fructokinase From Xylella Fastidiosa
pdb|3LKI|A Chain A, Crystal Structure Of Fructokinase With Bound Atp From
Xylella Fastidiosa
pdb|3LKI|B Chain B, Crystal Structure Of Fructokinase With Bound Atp From
Xylella Fastidiosa
Length = 338
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 236 RKRTAVITQGADPV---VVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQE 291
R + ++T A PV G++ F V ++ D+N AGDAFVGG L Q+
Sbjct: 223 RAQLLLVTDAAGPVHWYTRTAGGEVPTFRV------QVQDSNAAGDAFVGGXLYTFAQQ 275
>pdb|3CQD|A Chain A, Structure Of The Tetrameric Inhibited Form Of
Phosphofructokinase-2 From Escherichia Coli
pdb|3CQD|B Chain B, Structure Of The Tetrameric Inhibited Form Of
Phosphofructokinase-2 From Escherichia Coli
pdb|3N1C|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3N1C|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3N1C|C Chain C, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3N1C|D Chain D, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3UMO|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Potassium
pdb|3UMO|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Potassium
pdb|3UMP|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Cesium And Atp
pdb|3UMP|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Cesium And Atp
pdb|3UQD|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
pdb|3UQD|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
pdb|3UQD|C Chain C, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
pdb|3UQD|D Chain D, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
Length = 309
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 263 IVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAG 301
+V P K T GAGD+ VG +L + +EE VR G
Sbjct: 241 VVPPPVKSQSTVGAGDSMVGAMTLKLAENASLEEMVRFG 279
>pdb|2ABQ|A Chain A, Crystal Structure Of Fructose-1-Phosphate Kinase From
Bacillus Halodurans
pdb|2ABQ|B Chain B, Crystal Structure Of Fructose-1-Phosphate Kinase From
Bacillus Halodurans
Length = 306
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 8/65 (12%)
Query: 241 VITQGADPVVV--AQDGKL-----KKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKP 293
+I +G + ++V A DG L F V V P ++ ++ GAGD+ V GFL+ L + K
Sbjct: 206 LIGEGIESILVSFAGDGALFASAEGXFHVNV-PSGEVRNSVGAGDSVVAGFLAALQEGKS 264
Query: 294 IEECV 298
+E+ V
Sbjct: 265 LEDAV 269
>pdb|4E69|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus, Unliganded Structure
pdb|4E69|B Chain B, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus, Unliganded Structure
pdb|4EBU|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502312)
From Oceanicola Granulosus, With Bound AmpADP CRYSTAL
FORM I
pdb|4EUM|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus With Bound Amp, Crystal Form
Ii
pdb|4EUM|B Chain B, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus With Bound Amp, Crystal Form
Ii
Length = 328
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 238 RTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEEC 297
R+ V+ G V QDG+ + V V P ++VDT AGD+F G L ++ +P+E
Sbjct: 241 RSVVVKNGPHAVHFLQDGRRGR--VPVPPVAQVVDTTAAGDSFNAGLLDSVLAGQPLETA 298
Query: 298 VRAGCYTSHVIIQRSGC 314
+ A + ++Q G
Sbjct: 299 IAAAAALAGQVVQGKGA 315
>pdb|3UQE|A Chain A, Crystal Structure Of The Phosphofructokinase-2 Mutant Y23d
From Escherichia Coli
pdb|3UQE|B Chain B, Crystal Structure Of The Phosphofructokinase-2 Mutant Y23d
From Escherichia Coli
Length = 309
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 263 IVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAG 301
+V P K T GAGD+ VG +L + +EE VR G
Sbjct: 241 VVPPPVKSQSTVGAGDSMVGAMTLKLAENASLEEMVRFG 279
>pdb|2HW5|A Chain A, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa)
Hydratase Short Chain 1, Echs1
pdb|2HW5|B Chain B, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa)
Hydratase Short Chain 1, Echs1
pdb|2HW5|C Chain C, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa)
Hydratase Short Chain 1, Echs1
pdb|2HW5|D Chain D, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa)
Hydratase Short Chain 1, Echs1
pdb|2HW5|E Chain E, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa)
Hydratase Short Chain 1, Echs1
pdb|2HW5|F Chain F, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa)
Hydratase Short Chain 1, Echs1
Length = 286
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 23/140 (16%)
Query: 18 SSVVDDDFLNKY-DEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGE 76
SS VD N Y MAS N EYI + V L P A + + C D +
Sbjct: 8 SSGVDLGTENLYFQSMASGANFEYIIAEKRGKNNTVGLIQLNRPKALNAL-C---DGLID 63
Query: 77 EMKKNSKLAGVNVHYYEDESASTGTCAVCVVGGERSLVA--------NLSAANCYKSEHL 128
E+ + K+ +E++ A A+ + GG+++ A NLS +CY S+ L
Sbjct: 64 ELNQALKI-------FEEDPA---VGAIVLTGGDKAFAAGADIKEMQNLSFQDCYSSKFL 113
Query: 129 KKPENWALVEKAKYFYIAGF 148
K ++ V+K + G+
Sbjct: 114 KHWDHLTQVKKPVIAAVNGY 133
>pdb|3PTW|A Chain A, Crystal Structure Of Malonyl Coa-Acyl Carrier Protein
Transacylase From Clostridium Perfringens Atcc 13124
Length = 336
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 65/161 (40%), Gaps = 15/161 (9%)
Query: 105 CVVGGERSLVANLSAANCYKSEHLKKPENWALVEKAKY-----FYIAGFFLTVSPDSIQL 159
V G +VA L E ++K + +VE A Y I+G + + +++
Sbjct: 123 AVAEGIGGMVAVLRMTPEQVDEIIEKSSPYGIVEGANYNSPGQIVISGELVALE-KAMEF 181
Query: 160 VAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQG---WET 216
+ E + + +SAPF C + A EK+ ++ I N+ S V+G E
Sbjct: 182 IKE---VGGRAIKLPVSAPFHCSMLQPAAEKLEDELNKISINKLNGIVMSNVKGEAYLED 238
Query: 217 DDVEEIALKLSQWPKASE-IRKRTAVITQGADPVVVAQDGK 256
D++ I L SQ K I +I G D + GK
Sbjct: 239 DNI--IELLTSQVKKPVLFINDIEKMIESGVDTFIEIGPGK 277
>pdb|4GM6|A Chain A, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|B Chain B, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|C Chain C, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|D Chain D, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|E Chain E, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|F Chain F, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
Length = 351
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 77/186 (41%), Gaps = 25/186 (13%)
Query: 130 KPENWALVEKAK---YFYIAGFFLTVSPDSIQLVAE--HAAANNKV---FMMNLSAPFI- 180
K +W L E K +++G + +S +++V + A N + F MN A
Sbjct: 138 KSMDWDLSELLKGIRVLHVSGITIALSTFWLEMVVKIIREAKRNGIKISFDMNYRAKLWE 197
Query: 181 CEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEI--RKR 238
E K A +++LP +DY + +A F ++ TD + + K +P KR
Sbjct: 198 LEAAKRAYQQLLPLVDYCSAGQMDAVAFFEISSETTDYYQAMHDK---YPNIELFYATKR 254
Query: 239 TAV-----ITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKP 293
T + + QG + Q + + P +VD G GDA+ L ++ E
Sbjct: 255 TVISASHHLLQGH---LWTQGECWESEEYAIYP---IVDRVGGGDAYTAAVLHGILSEWR 308
Query: 294 IEECVR 299
+E V+
Sbjct: 309 PDETVK 314
>pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nitfhit Protein
pdb|1EMS|B Chain B, Crystal Structure Of The C. Elegans Nitfhit Protein
Length = 440
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 12 NPLLDISSVVDDDFLNKYDEMASKYNVEYIAGG 44
N +D++ D +++ KY E+A K+N+ GG
Sbjct: 64 NEQIDLAMATDCEYMEKYRELARKHNIWLSLGG 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,056,899
Number of Sequences: 62578
Number of extensions: 407746
Number of successful extensions: 1311
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1214
Number of HSP's gapped (non-prelim): 61
length of query: 323
length of database: 14,973,337
effective HSP length: 99
effective length of query: 224
effective length of database: 8,778,115
effective search space: 1966297760
effective search space used: 1966297760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)