Query 020653
Match_columns 323
No_of_seqs 305 out of 888
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 06:13:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020653.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020653hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uss_A Histone H1; DNA binding 99.9 6.1E-23 2.1E-27 163.8 9.2 73 146-218 4-83 (88)
2 1hst_A Histone H5; chromosomal 99.9 4.7E-23 1.6E-27 165.3 7.9 73 146-218 4-81 (90)
3 1uhm_A Histone H1, histone HHO 99.9 5.2E-23 1.8E-27 160.5 7.2 70 147-216 2-77 (78)
4 1ust_A Histone H1; DNA binding 99.9 2.9E-22 1E-26 161.6 6.1 73 146-218 4-82 (93)
5 2rqp_A Heterochromatin protein 99.8 2.1E-22 7.3E-27 160.3 2.5 72 146-217 6-84 (88)
6 1ghc_A GH1; chromosomal protei 99.8 4.9E-21 1.7E-25 147.7 1.1 67 148-215 2-74 (75)
7 2lso_A Histone H1X; structural 99.6 2.7E-20 9.2E-25 147.2 0.0 70 149-218 5-80 (83)
8 1x58_A Hypothetical protein 49 99.8 6.1E-19 2.1E-23 132.9 6.1 55 3-61 6-60 (62)
9 2aje_A Telomere repeat-binding 99.7 4E-18 1.4E-22 140.4 7.3 59 2-62 10-68 (105)
10 2roh_A RTBP1, telomere binding 99.7 9.9E-18 3.4E-22 141.4 5.2 58 2-61 28-85 (122)
11 2ckx_A NGTRF1, telomere bindin 99.7 2.2E-17 7.6E-22 130.7 5.1 55 6-62 1-55 (83)
12 2juh_A Telomere binding protei 99.7 1.5E-17 5.3E-22 140.0 3.9 58 2-61 14-71 (121)
13 3sjm_A Telomeric repeat-bindin 99.7 7E-17 2.4E-21 121.7 5.8 54 3-60 9-62 (64)
14 1w0t_A Telomeric repeat bindin 99.6 2E-15 6.8E-20 108.8 6.0 52 4-59 1-52 (53)
15 1ity_A TRF1; helix-turn-helix, 99.5 5.4E-15 1.8E-19 111.9 6.2 56 2-61 7-62 (69)
16 1guu_A C-MYB, MYB proto-oncoge 99.5 9.2E-14 3.2E-18 99.3 6.1 50 4-59 2-51 (52)
17 2d9a_A B-MYB, MYB-related prot 99.4 1.2E-13 4.1E-18 101.5 6.4 54 2-61 5-58 (60)
18 1gvd_A MYB proto-oncogene prot 99.4 2.6E-13 8.7E-18 97.1 6.4 50 4-59 2-51 (52)
19 2dim_A Cell division cycle 5-l 99.3 1.3E-12 4.5E-17 98.8 6.5 54 2-61 6-59 (70)
20 1x41_A Transcriptional adaptor 99.3 1.4E-12 4.8E-17 96.3 6.2 53 2-60 5-57 (60)
21 2elk_A SPCC24B10.08C protein; 99.3 3E-12 1E-16 94.2 5.4 48 4-57 8-56 (58)
22 2llk_A Cyclin-D-binding MYB-li 99.2 1.4E-11 4.9E-16 95.2 5.6 51 3-61 21-71 (73)
23 2cu7_A KIAA1915 protein; nucle 99.1 3.2E-11 1.1E-15 91.9 5.0 52 3-61 7-58 (72)
24 1gv2_A C-MYB, MYB proto-oncoge 99.1 6.4E-11 2.2E-15 95.2 7.0 52 3-60 2-53 (105)
25 2yum_A ZZZ3 protein, zinc fing 99.1 4.5E-11 1.5E-15 91.4 4.9 52 3-60 6-62 (75)
26 2k9n_A MYB24; R2R3 domain, DNA 99.1 6.6E-11 2.2E-15 96.0 6.0 51 5-61 1-51 (107)
27 2din_A Cell division cycle 5-l 99.1 6.1E-11 2.1E-15 88.7 4.4 51 3-61 7-57 (66)
28 3zqc_A MYB3; transcription-DNA 99.1 1.2E-10 4.2E-15 97.5 6.8 51 5-61 2-52 (131)
29 3osg_A MYB21; transcription-DN 99.1 1.5E-10 5.1E-15 96.6 6.4 53 2-61 8-60 (126)
30 1h8a_C AMV V-MYB, MYB transfor 99.1 1.8E-10 6.2E-15 95.9 6.5 52 3-60 25-76 (128)
31 2yus_A SWI/SNF-related matrix- 99.0 1.4E-10 4.8E-15 90.6 4.5 48 4-58 17-64 (79)
32 1gv2_A C-MYB, MYB proto-oncoge 99.0 4.9E-10 1.7E-14 90.1 6.5 50 3-59 54-103 (105)
33 3osg_A MYB21; transcription-DN 99.0 5.9E-10 2E-14 92.9 6.1 52 3-61 60-111 (126)
34 3zqc_A MYB3; transcription-DNA 99.0 6.8E-10 2.3E-14 93.0 6.4 55 3-64 52-107 (131)
35 2k9n_A MYB24; R2R3 domain, DNA 98.9 5.7E-10 2E-14 90.4 5.1 51 3-60 51-101 (107)
36 2cqr_A RSGI RUH-043, DNAJ homo 98.9 9.8E-10 3.3E-14 84.9 5.2 52 4-61 17-71 (73)
37 1h8a_C AMV V-MYB, MYB transfor 98.9 1.6E-09 5.3E-14 90.2 6.3 50 3-59 77-126 (128)
38 1h89_C C-MYB, MYB proto-oncoge 98.9 3E-09 1E-13 91.4 6.7 52 3-60 56-107 (159)
39 2ltp_A Nuclear receptor corepr 98.4 2.7E-10 9.4E-15 90.5 0.0 52 3-61 14-65 (89)
40 1h89_C C-MYB, MYB proto-oncoge 98.7 1.3E-08 4.5E-13 87.4 6.2 50 3-59 108-157 (159)
41 2cjj_A Radialis; plant develop 98.6 2.7E-08 9.3E-13 80.1 5.0 51 4-60 7-60 (93)
42 1ign_A Protein (RAP1); RAP1,ye 98.6 5.4E-08 1.8E-12 90.3 5.5 52 4-61 7-63 (246)
43 2eqr_A N-COR1, N-COR, nuclear 98.3 7.5E-07 2.6E-11 65.8 6.1 50 3-59 10-59 (61)
44 2cqq_A RSGI RUH-037, DNAJ homo 98.2 1.4E-06 4.7E-11 67.0 4.9 51 3-60 6-59 (72)
45 3hm5_A DNA methyltransferase 1 97.9 8.9E-06 3E-10 65.6 5.0 53 6-60 31-83 (93)
46 2iw5_B Protein corest, REST co 97.8 2E-05 6.9E-10 72.7 5.6 52 3-61 131-182 (235)
47 1wgx_A KIAA1903 protein; MYB D 97.7 3.5E-05 1.2E-09 59.6 4.7 49 6-60 9-60 (73)
48 4b4c_A Chromodomain-helicase-D 97.7 6E-05 2.1E-09 66.8 6.7 55 5-59 134-196 (211)
49 1fex_A TRF2-interacting telome 97.4 0.00017 5.8E-09 53.2 4.5 49 5-58 2-58 (59)
50 2ebi_A DNA binding protein GT- 97.2 0.00014 4.6E-09 56.6 2.4 55 4-60 3-66 (86)
51 2xb0_X Chromo domain-containin 97.2 0.0002 6.7E-09 67.5 3.7 32 7-38 170-201 (270)
52 4iej_A DNA methyltransferase 1 97.1 0.00047 1.6E-08 55.6 4.8 52 6-59 31-82 (93)
53 2yqk_A Arginine-glutamic acid 97.0 0.0016 5.4E-08 48.3 6.4 51 4-60 8-58 (63)
54 2crg_A Metastasis associated p 96.7 0.0032 1.1E-07 47.7 5.9 53 3-61 6-58 (70)
55 1ofc_X ISWI protein; nuclear p 96.7 0.0014 4.8E-08 62.6 4.7 57 4-60 211-276 (304)
56 2xag_B REST corepressor 1; ami 96.5 0.0026 8.8E-08 64.2 5.7 51 4-61 379-429 (482)
57 4eef_G F-HB80.4, designed hema 96.2 0.0015 5.3E-08 50.6 1.5 43 6-54 21-66 (74)
58 4a69_C Nuclear receptor corepr 96.0 0.011 3.9E-07 47.1 5.8 47 5-58 43-89 (94)
59 2y9y_A Imitation switch protei 95.3 0.014 4.8E-07 57.2 4.7 57 4-60 227-292 (374)
60 2a07_F Forkhead box protein P2 94.4 0.087 3E-06 42.2 6.4 58 147-208 3-64 (93)
61 3g73_A Forkhead box protein M1 94.3 0.086 3E-06 45.2 6.5 73 142-218 13-96 (142)
62 1ug2_A 2610100B20RIK gene prod 94.2 0.07 2.4E-06 43.0 5.4 53 2-60 30-84 (95)
63 2c6y_A Forkhead box protein K2 93.9 0.12 4.1E-06 42.6 6.4 60 145-208 14-77 (111)
64 1irz_A ARR10-B; helix-turn-hel 93.4 0.16 5.4E-06 38.2 5.8 53 2-58 4-61 (64)
65 1vtn_C HNF-3/FORK head DNA-rec 93.4 0.17 5.7E-06 41.1 6.4 58 147-208 3-64 (102)
66 4b4c_A Chromodomain-helicase-D 93.3 0.06 2.1E-06 47.3 3.9 52 4-59 6-59 (211)
67 2hfh_A Genesis, HFH-2; HNF-3 h 93.0 0.18 6E-06 41.5 6.0 58 147-208 3-64 (109)
68 2hdc_A Protein (transcription 92.8 0.15 5E-06 41.1 5.2 57 148-208 3-63 (97)
69 1ign_A Protein (RAP1); RAP1,ye 92.5 0.12 4.1E-06 48.1 4.7 51 5-61 94-201 (246)
70 1kq8_A HFH-1, hepatocyte nucle 92.1 0.15 5.3E-06 41.2 4.5 57 148-208 3-63 (100)
71 3l2c_A Forkhead box protein O4 91.8 0.41 1.4E-05 39.3 6.7 60 146-209 23-91 (110)
72 3bpy_A FORK head domain, forkh 91.8 0.45 1.5E-05 37.3 6.7 59 147-209 5-72 (85)
73 2lr8_A CAsp8-associated protei 91.0 0.031 1.1E-06 42.7 0.0 51 3-60 12-64 (70)
74 3coa_C Forkhead box protein O1 90.7 0.56 1.9E-05 39.0 6.6 58 147-208 11-77 (117)
75 2xb0_X Chromo domain-containin 88.6 0.73 2.5E-05 43.2 6.3 54 4-61 2-57 (270)
76 1e17_A AFX; DNA binding domain 83.5 0.98 3.3E-05 39.1 4.1 58 148-209 41-107 (150)
77 2xag_B REST corepressor 1; ami 70.3 0.9 3.1E-05 45.9 0.0 44 6-56 190-233 (482)
78 1qgp_A Protein (double strande 59.1 13 0.00046 27.7 4.7 58 152-216 15-75 (77)
79 1r7j_A Conserved hypothetical 57.9 17 0.00057 28.1 5.2 57 151-216 5-61 (95)
80 1ofc_X ISWI protein; nuclear p 57.8 15 0.0005 35.0 5.7 47 6-58 111-157 (304)
81 1sfu_A 34L protein; protein/Z- 53.1 20 0.00067 27.6 4.7 51 153-210 14-64 (75)
82 2kpm_A Uncharacterized protein 51.2 25 0.00086 28.4 5.4 38 150-187 20-60 (105)
83 3fbl_A Putative uncharacterize 49.8 13 0.00044 28.2 3.2 29 154-182 51-82 (82)
84 1y0u_A Arsenical resistance op 48.6 39 0.0013 25.2 5.9 43 168-217 43-85 (96)
85 2lnb_A Z-DNA-binding protein 1 48.4 24 0.00081 27.5 4.5 55 152-215 20-75 (80)
86 1ldd_A APC2WHB, anaphase promo 44.3 14 0.00049 28.2 2.7 26 190-215 48-74 (74)
87 1qbj_A Protein (double-strande 40.7 60 0.0021 24.5 5.8 58 153-217 12-72 (81)
88 1tbx_A ORF F-93, hypothetical 40.1 67 0.0023 23.7 6.0 51 153-209 10-60 (99)
89 1psm_A SPAM-H1; polymorphic an 37.5 0.72 2.5E-05 31.1 -4.8 15 279-293 19-33 (38)
90 2kzv_A Uncharacterized protein 36.0 55 0.0019 25.6 5.0 38 151-188 8-48 (92)
91 3jth_A Transcription activator 32.3 97 0.0033 22.8 5.8 40 162-209 31-70 (98)
92 1p6r_A Penicillinase repressor 31.5 1.1E+02 0.0037 21.9 5.8 52 152-209 10-61 (82)
93 1oyi_A Double-stranded RNA-bin 31.0 40 0.0014 26.0 3.4 49 154-210 17-65 (82)
94 2jt1_A PEFI protein; solution 30.2 89 0.0031 23.4 5.2 21 191-211 40-60 (77)
95 2heo_A Z-DNA binding protein 1 29.5 68 0.0023 22.9 4.3 55 152-215 11-66 (67)
96 2dk5_A DNA-directed RNA polyme 27.7 2E+02 0.007 21.9 7.2 53 150-210 19-71 (91)
97 3cuo_A Uncharacterized HTH-typ 25.6 77 0.0026 22.9 4.1 39 164-209 34-72 (99)
98 2x4h_A Hypothetical protein SS 25.2 90 0.0031 24.2 4.7 54 154-214 16-70 (139)
99 2v9v_A Selenocysteine-specific 24.1 1E+02 0.0035 24.1 4.8 60 152-216 64-130 (135)
100 1uxc_A FRUR (1-57), fructose r 23.7 40 0.0014 24.3 2.1 39 161-199 4-45 (65)
101 1mkm_A ICLR transcriptional re 22.1 1.2E+02 0.004 26.6 5.2 53 156-217 13-66 (249)
102 1xn7_A Hypothetical protein YH 20.9 1.4E+02 0.0046 22.4 4.6 18 191-208 32-49 (78)
103 2og0_A Excisionase; protein-DN 20.5 66 0.0022 22.7 2.6 26 193-218 18-47 (52)
104 2fu4_A Ferric uptake regulatio 20.4 1.8E+02 0.0061 20.7 5.1 54 153-210 19-73 (83)
No 1
>1uss_A Histone H1; DNA binding protein, linker histone, DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13 PDB: 1yqa_A
Probab=99.88 E-value=6.1e-23 Score=163.81 Aligned_cols=73 Identities=21% Similarity=0.428 Sum_probs=68.8
Q ss_pred CCCCCChHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCCC----chhHHHHHHHHHHhhhhcCceeeccc---ccccCCCC
Q 020653 146 KEPVARLDKLILEAISNLKEPNGSDRASIASYIEDQYWA----PANLRKLLATKLKFLSANGTLIKAKH---KYRITPNT 218 (323)
Q Consensus 146 ~~~hP~Y~~MI~EAI~aLker~GSS~~AI~kyIe~~y~v----p~nf~~lL~~aLKrlVasGkLvkvKg---syKl~~~~ 218 (323)
..+||+|.+||+|||.+|+||+|||++||++||+++|++ |++|+.+|+.+||+||++|+|+|+|| ||||+...
T Consensus 4 ~~~hP~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~~~~~~~~~~~~~lk~aLK~~v~~G~lvq~KgasGsfkl~~k~ 83 (88)
T 1uss_A 4 SPSSLTYKEMILKSMPQLNDGKGSSRIVLKKYVKDTFSSKLKTSSNFDYLFNSAIKKCVENGELVQPKGPSGIIKLNKKK 83 (88)
T ss_dssp CCSSCCHHHHHHHHHHHSCCTTSBCHHHHHHHHHHHTTTTSCCSSTHHHHHHHHHHHHHHHSSEECSSTTSSCBEECCSC
T ss_pred CCCCCCHHHHHHHHHHHhccCCCcCHHHHHHHHHHhCCCcccchHhHHHHHHHHHHHHHHcCCEEeccCCCCceecCccc
Confidence 568999999999999999999999999999999999985 58999999999999999999999999 99998754
No 2
>1hst_A Histone H5; chromosomal protein; 2.60A {Gallus gallus} SCOP: a.4.5.13
Probab=99.88 E-value=4.7e-23 Score=165.33 Aligned_cols=73 Identities=26% Similarity=0.369 Sum_probs=67.3
Q ss_pred CCCCCChHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCCCchhHHHHHHHHHHhhhhcCceeeccc-----ccccCCCC
Q 020653 146 KEPVARLDKLILEAISNLKEPNGSDRASIASYIEDQYWAPANLRKLLATKLKFLSANGTLIKAKH-----KYRITPNT 218 (323)
Q Consensus 146 ~~~hP~Y~~MI~EAI~aLker~GSS~~AI~kyIe~~y~vp~nf~~lL~~aLKrlVasGkLvkvKg-----syKl~~~~ 218 (323)
+.+||+|.+||+|||.+|+||+|||++||++||+++|+++++|+.+|+.+|++||++|+|+|++| +|||++..
T Consensus 4 ~~~hP~y~~MI~eAI~~lker~GsS~~AI~KyI~~~y~~~~~~~~~l~~aLk~~v~~G~l~q~Kg~GasGsfkl~~~~ 81 (90)
T 1hst_A 4 SASHPTYSEMIAAAIRAEKSRGGSSRQSIQKYIKSHYKVGHNADLQIKLSIRRLLAAGVLKQTKGVGASGSFRLAKSD 81 (90)
T ss_dssp --CCCCHHHHHHHHHHTCCCSSCEEHHHHHHHHHHHSCCCTTHHHHHHHHHHHHHHTTSEEEECCSSCCCEEEECC--
T ss_pred CCCCCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHHccCchhHHHHHHHHHHHHHHcCCeeeecCCCccceeecCCCc
Confidence 45899999999999999999999999999999999999877899999999999999999999998 99998754
No 3
>1uhm_A Histone H1, histone HHO1P; winged helix-turn-helix, linker histone, riken structural genomics/proteomics initiative, RSGI; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=99.88 E-value=5.2e-23 Score=160.54 Aligned_cols=70 Identities=21% Similarity=0.383 Sum_probs=65.7
Q ss_pred CCCCChHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCCC--c-hhHHHHHHHHHHhhhhcCceeecc---cccccCC
Q 020653 147 EPVARLDKLILEAISNLKEPNGSDRASIASYIEDQYWA--P-ANLRKLLATKLKFLSANGTLIKAK---HKYRITP 216 (323)
Q Consensus 147 ~~hP~Y~~MI~EAI~aLker~GSS~~AI~kyIe~~y~v--p-~nf~~lL~~aLKrlVasGkLvkvK---gsyKl~~ 216 (323)
.+||+|.+||+|||.+|+||+|||++||++||+++|++ | ++|+.+|+.+||++|++|+|+|+| |||||++
T Consensus 2 ~~hP~y~~MI~eAI~~lker~GsS~~AIkKyI~~~y~~~~~~~~~~~~l~~aLk~~v~~G~l~q~KGasgsfkl~~ 77 (78)
T 1uhm_A 2 ASSKSYRELIIEGLTALKERKGSSRPALKKFIKENYPIVGSASNFDLYFNNAIKKGVEAGDFEQPKGPAGAVKLAK 77 (78)
T ss_dssp CCCCCHHHHHHHHHHHHCCSSCEEHHHHHHHHHTTSCTTTSSSTHHHHHHHHHHHHHHTTSEECCCTTSCEEEESC
T ss_pred CCCCCHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHHHHcCCEEeccCCCcceecCC
Confidence 47999999999999999999999999999999999985 5 799999999999999999999976 5999975
No 4
>1ust_A Histone H1; DNA binding protein, linker histone, DNA binding domain, winged helix fold; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=99.86 E-value=2.9e-22 Score=161.60 Aligned_cols=73 Identities=21% Similarity=0.377 Sum_probs=67.6
Q ss_pred CCCCCChHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCCC--c-hhHHHHHHHHHHhhhhcCceeecc---cccccCCCC
Q 020653 146 KEPVARLDKLILEAISNLKEPNGSDRASIASYIEDQYWA--P-ANLRKLLATKLKFLSANGTLIKAK---HKYRITPNT 218 (323)
Q Consensus 146 ~~~hP~Y~~MI~EAI~aLker~GSS~~AI~kyIe~~y~v--p-~nf~~lL~~aLKrlVasGkLvkvK---gsyKl~~~~ 218 (323)
..+||+|.+||+|||.+|+||+|||++||++||+++|++ | ++|+.+|+.+|++||++|+|+|++ |+|||+...
T Consensus 4 ~~~hP~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~~~~~~~~~~~~lk~aLK~~v~~G~lvq~KGasgsfKL~~k~ 82 (93)
T 1ust_A 4 EASSKSYRELIIEGLTALKERKGSSRPALKKFIKENYPIVGSASNFDLYFNNAIKKGVEAGDFEQPKGPAGAVKLAKKK 82 (93)
T ss_dssp SSCCCCHHHHHHHHHTTTTTTSCEEHHHHHHHHHHHCHHHHTSTTHHHHHHHHHHHHHHTTSEECTTCTTSEEEECSCC
T ss_pred CCCCCCHHHHHHHHHHHcccCCCcCHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHHHHcCCEEeccCCCceeeCCCCC
Confidence 457999999999999999999999999999999999985 5 899999999999999999999976 699998743
No 5
>2rqp_A Heterochromatin protein 1-binding protein 3; histone H1, alternative splicing, chromosomal protein, DNA-binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=99.84 E-value=2.1e-22 Score=160.33 Aligned_cols=72 Identities=22% Similarity=0.313 Sum_probs=67.9
Q ss_pred CCCCCChHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCC-C-chhHHHHHHHHHHhhhhcCceeeccc-----ccccCCC
Q 020653 146 KEPVARLDKLILEAISNLKEPNGSDRASIASYIEDQYW-A-PANLRKLLATKLKFLSANGTLIKAKH-----KYRITPN 217 (323)
Q Consensus 146 ~~~hP~Y~~MI~EAI~aLker~GSS~~AI~kyIe~~y~-v-p~nf~~lL~~aLKrlVasGkLvkvKg-----syKl~~~ 217 (323)
..+||+|.+||+|||.+|+||+|||++||++||+++|+ + +++|+.+|+.+|+++|++|+|+|+|| +|||++.
T Consensus 6 ~~~hp~y~~MI~eAI~~Lker~GsS~~AI~KyI~~~y~~~~~~~~~~~lk~aLk~~v~~G~l~q~Kg~GasGsfkl~~~ 84 (88)
T 2rqp_A 6 SSPRPKMDAILTEAIKACFQKSGASVVAIRKYIIHKYPSLELERRGYLLKQALKRELNRGVIKQVKGKGASGSFVVVQK 84 (88)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHCSTHHHHTTTTTHHHHHHHHHHHHTTCCSSCSSTTTSSCCTTT
T ss_pred CCCCCCHHHHHHHHHHHhccCCCcCHHHHHHHHHHhCCCCChhhHHHHHHHHHHHHHhcCcEEeecCCCCcceeecccc
Confidence 45899999999999999999999999999999999998 3 57899999999999999999999998 9999875
No 6
>1ghc_A GH1; chromosomal protein; NMR {Gallus gallus} SCOP: a.4.5.13
Probab=99.80 E-value=4.9e-21 Score=147.69 Aligned_cols=67 Identities=25% Similarity=0.349 Sum_probs=62.9
Q ss_pred CCCChHHHHHHHHHhCCCCCCCCHHHHHHHHHhh-CCCchhHHHHHHHHHHhhhhcCceeeccc-----ccccC
Q 020653 148 PVARLDKLILEAISNLKEPNGSDRASIASYIEDQ-YWAPANLRKLLATKLKFLSANGTLIKAKH-----KYRIT 215 (323)
Q Consensus 148 ~hP~Y~~MI~EAI~aLker~GSS~~AI~kyIe~~-y~vp~nf~~lL~~aLKrlVasGkLvkvKg-----syKl~ 215 (323)
+||+|.+||+|||.+|+||+|||++||++||+++ |.++ +++.+|+.+||++|++|+|+|++| +|||+
T Consensus 2 ~hP~y~~mI~~AI~alker~GsS~~AI~Kyi~~~~~~~~-~~~~~l~~aLk~~v~~G~l~~~kg~gasGsfkl~ 74 (75)
T 1ghc_A 2 AGPSVTELITKAVSASKERKGLSLAALKKALAAGGYDVE-KNNSRIKLGLKSLVSKGTLVQTKGTGASGSFRLS 74 (75)
T ss_dssp CSSSHHHHHHHHHHHCSSSSCCTTSSGGGSSSSSSCCSS-SSHHHHHHHTTTHHHHTSSCCCCCSTTSCCCCSC
T ss_pred CCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHccCCch-hHHHHHHHHHHHHHhcCCeEeccCCCCccccccC
Confidence 6999999999999999999999999999999999 5554 678999999999999999999998 99986
No 7
>2lso_A Histone H1X; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, nuclear protein; NMR {Homo sapiens}
Probab=99.63 E-value=2.7e-20 Score=147.20 Aligned_cols=70 Identities=29% Similarity=0.431 Sum_probs=65.1
Q ss_pred CCChHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCC-CchhHHHHHHHHHHhhhhcCceeeccc-----ccccCCCC
Q 020653 149 VARLDKLILEAISNLKEPNGSDRASIASYIEDQYW-APANLRKLLATKLKFLSANGTLIKAKH-----KYRITPNT 218 (323)
Q Consensus 149 hP~Y~~MI~EAI~aLker~GSS~~AI~kyIe~~y~-vp~nf~~lL~~aLKrlVasGkLvkvKg-----syKl~~~~ 218 (323)
.++|.+||+|||.+|+||+|||++||++||+++|+ .+++|+.+|+.+||++|++|+|+|+|| ||||++..
T Consensus 5 ~~~y~~MI~eAI~aLker~GSS~~AI~K~i~~~~~~~~~~~~~~lk~aLK~~v~~G~Lvq~Kg~GasGsfKl~~k~ 80 (83)
T 2lso_A 5 PGKYSQLVVETIRRLGERNGSSLAKIYTEAKKVPWFDQQNGRTYLKYSIKALVQNDTLLQVKGTGANGSFKLNRKK 80 (83)
Confidence 46899999999999999999999999999999985 578999999999999999999999998 99998744
No 8
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.76 E-value=6.1e-19 Score=132.88 Aligned_cols=55 Identities=29% Similarity=0.462 Sum_probs=50.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhcCcccccccCCCCHHhHHHHHHHhhcccc
Q 020653 3 APKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAI 61 (323)
Q Consensus 3 ~~k~~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (323)
+.|++||+||++.|++||++||. +|++|+.+|.| |.+||+||||||||||.+...
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f---~~~RT~VdLKdk~r~L~k~~~ 60 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPF---QKGRRAVDLAHKYHRLISGPS 60 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCC---CTTCCHHHHHHHHHHHHTCSS
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCC---ccCcccchHHHHHHHHHhccc
Confidence 67899999999999999999999 99999997655 789999999999999998754
No 9
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.73 E-value=4e-18 Score=140.43 Aligned_cols=59 Identities=36% Similarity=0.548 Sum_probs=53.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChhhhhcCcccccccCCCCHHhHHHHHHHhhccccc
Q 020653 2 GAPKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAIW 62 (323)
Q Consensus 2 g~~k~~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~~~ 62 (323)
++++++||+|||++|++||++||.|+|+.|++.+ | .+|.+||++|||||||||++...+
T Consensus 10 rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~-~-~~f~~RT~v~lKdrWrnllk~~~~ 68 (105)
T 2aje_A 10 RRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCA-F-EDADHRTYVDLKDKWKTLVHTAKI 68 (105)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSS-S-SSTTCCCHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHh-c-cccCCCCHHHHHHHHHHHHhhccC
Confidence 5789999999999999999999999999999954 3 367999999999999999998763
No 10
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.69 E-value=9.9e-18 Score=141.41 Aligned_cols=58 Identities=36% Similarity=0.609 Sum_probs=52.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChhhhhcCcccccccCCCCHHhHHHHHHHhhcccc
Q 020653 2 GAPKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAI 61 (323)
Q Consensus 2 g~~k~~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (323)
++++++||.|||+.|++||++||.|+|+.|++.+ | .+|.+||++|||||||||++...
T Consensus 28 rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~-~-~~~~~RT~vdlKdRWrnllk~~~ 85 (122)
T 2roh_A 28 RRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRA-F-ENVHHRTYVDLKDKWKTLVHTAS 85 (122)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHH-H-SSSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHh-c-cccCCCCHHHHHHHHHHHHhhcc
Confidence 5789999999999999999999999999999953 3 35789999999999999998765
No 11
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.68 E-value=2.2e-17 Score=130.65 Aligned_cols=55 Identities=36% Similarity=0.610 Sum_probs=49.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhcCcccccccCCCCHHhHHHHHHHhhccccc
Q 020653 6 QKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAIW 62 (323)
Q Consensus 6 ~~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~~~ 62 (323)
++||+|||+.|++||++||.|+|+.|++++ | .+|.+||++|||||||||++....
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~-~-~~~~~RT~~~lKdrWrnllk~~~~ 55 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRA-F-DNADHRTYVDLKDKWKTLVHTASI 55 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHH-C-TTCTTSCHHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhh-c-cccCCCCHHHHHHHHHHHHHhccC
Confidence 589999999999999999999999999964 2 357999999999999999987653
No 12
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.67 E-value=1.5e-17 Score=140.05 Aligned_cols=58 Identities=33% Similarity=0.494 Sum_probs=52.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChhhhhcCcccccccCCCCHHhHHHHHHHhhcccc
Q 020653 2 GAPKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAI 61 (323)
Q Consensus 2 g~~k~~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (323)
++++++||.|||+.|++||++||.|+|+.|+.++.| +|.+||++|||||||||++...
T Consensus 14 rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~--~f~~RT~v~lKdRWrnllk~~~ 71 (121)
T 2juh_A 14 RRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFD--NADHRTYVDLKDKWKTLVHTAS 71 (121)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCS--CCSSCCSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcc--ccCCCCHHHHHHHHHHHHhhhc
Confidence 578999999999999999999999999999997644 5799999999999999998644
No 13
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.66 E-value=7e-17 Score=121.68 Aligned_cols=54 Identities=41% Similarity=0.733 Sum_probs=48.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhcCcccccccCCCCHHhHHHHHHHhhccc
Q 020653 3 APKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTA 60 (323)
Q Consensus 3 ~~k~~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~ 60 (323)
.+|++||+|||+.|+++|++||.|+|+.|++.+. |.+||++||+|||+||.++.
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~----~~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYP----FVNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSC----CSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcC----CCCCCHHHHHHHHHHHhccC
Confidence 4688999999999999999999999999998532 46999999999999999875
No 14
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.58 E-value=2e-15 Score=108.84 Aligned_cols=52 Identities=40% Similarity=0.845 Sum_probs=46.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhcCcccccccCCCCHHhHHHHHHHhhcc
Q 020653 4 PKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVT 59 (323)
Q Consensus 4 ~k~~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~ 59 (323)
++++||+|||+.|+.+|++||.|+|+.|+.. |. |.+||++||++||+|+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~--~~--~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLH--YK--FNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHH--SC--CSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHH--cC--CCCCCHHHHHHHHHHHHcc
Confidence 4789999999999999999999999999983 31 2389999999999999874
No 15
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.55 E-value=5.4e-15 Score=111.89 Aligned_cols=56 Identities=38% Similarity=0.798 Sum_probs=49.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChhhhhcCcccccccCCCCHHhHHHHHHHhhcccc
Q 020653 2 GAPKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAI 61 (323)
Q Consensus 2 g~~k~~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (323)
++++++||+|||+.|+.+|++||.|+|..|+.. |. |.+||.+||++||+|++++..
T Consensus 7 ~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~--~~--~~~Rt~~qcr~Rw~~~l~p~i 62 (69)
T 1ity_A 7 ARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLH--YK--FNNRTSVMLKDRWRTMKKLKL 62 (69)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHH--SC--CSSCCHHHHHHHHHHHHHTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHH--cC--cCCCCHHHHHHHHHHHcCCCC
Confidence 467899999999999999999999999999983 21 239999999999999999875
No 16
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.45 E-value=9.2e-14 Score=99.32 Aligned_cols=50 Identities=32% Similarity=0.684 Sum_probs=45.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhcCcccccccCCCCHHhHHHHHHHhhcc
Q 020653 4 PKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVT 59 (323)
Q Consensus 4 ~k~~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~ 59 (323)
.+++||+|||+.|+++|++||.++|..|.. .|.+||..||++||.+++.+
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~------~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIAN------YLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHH------TSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHH------HcCCCCHHHHHHHHHHHcCc
Confidence 478999999999999999999999999998 35799999999999999875
No 17
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.44 E-value=1.2e-13 Score=101.54 Aligned_cols=54 Identities=28% Similarity=0.527 Sum_probs=49.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChhhhhcCcccccccCCCCHHhHHHHHHHhhcccc
Q 020653 2 GAPKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAI 61 (323)
Q Consensus 2 g~~k~~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (323)
+..+.+||+|||+.|+++|.+||.++|..|.. +|.+||..||++||.+++.+..
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~------~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQFGQQDWKFLAS------HFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHH------HCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHH------HccCCCHHHHHHHHHHHcCCcc
Confidence 35788999999999999999999999999998 3679999999999999998764
No 18
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.42 E-value=2.6e-13 Score=97.13 Aligned_cols=50 Identities=30% Similarity=0.506 Sum_probs=46.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhcCcccccccCCCCHHhHHHHHHHhhcc
Q 020653 4 PKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVT 59 (323)
Q Consensus 4 ~k~~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~ 59 (323)
.+++||+|||+.|+++|.+||.++|..|.. .|.+||..||++||.+++.+
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~------~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAK------HLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHT------TSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcChHHHHHH------HcCCCCHHHHHHHHHHHcCc
Confidence 578999999999999999999999999998 35799999999999998875
No 19
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.3e-12 Score=98.83 Aligned_cols=54 Identities=31% Similarity=0.538 Sum_probs=48.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChhhhhcCcccccccCCCCHHhHHHHHHHhhcccc
Q 020653 2 GAPKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAI 61 (323)
Q Consensus 2 g~~k~~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (323)
+.++++||+|||+.|+.+|.+||.++|..|.. .|.+||..||++||.+++.+..
T Consensus 6 ~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~------~l~~Rt~~qcr~Rw~~~L~p~i 59 (70)
T 2dim_A 6 SGKGGVWRNTEDEILKAAVMKYGKNQWSRIAS------LLHRKSAKQCKARWYEWLDPSI 59 (70)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHH------HSTTCCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHH------HhcCCCHHHHHHHHHHHcCCcc
Confidence 35678999999999999999999999999998 3679999999999999988754
No 20
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.34 E-value=1.4e-12 Score=96.30 Aligned_cols=53 Identities=21% Similarity=0.435 Sum_probs=47.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChhhhhcCcccccccCCCCHHhHHHHHHHhhccc
Q 020653 2 GAPKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTA 60 (323)
Q Consensus 2 g~~k~~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~ 60 (323)
...+.+||+|||+.|+++|++||.++|..|.. .|.+||..||++||.+++...
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~------~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCGFGNWQDVAN------QMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHH------HHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHH------HhCCCCHHHHHHHHHHHccCC
Confidence 35688999999999999999999999999998 357999999999999988764
No 21
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.28 E-value=3e-12 Score=94.15 Aligned_cols=48 Identities=23% Similarity=0.475 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhcCcccccccC-CCCHHhHHHHHHHhh
Q 020653 4 PKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILH-SRSNVDLKDKWRNIN 57 (323)
Q Consensus 4 ~k~~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~~~l~-~RT~vdLKDKWRnl~ 57 (323)
.+.+||+|||+.|+++|++||.++|..|.. .+. +||..||++||.++.
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~W~~IA~------~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGNWADIAD------YVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTCHHHHHH------HHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHH------HHCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999999999997 356 899999999999875
No 22
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.20 E-value=1.4e-11 Score=95.23 Aligned_cols=51 Identities=37% Similarity=0.429 Sum_probs=45.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhcCcccccccCCCCHHhHHHHHHHhhcccc
Q 020653 3 APKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAI 61 (323)
Q Consensus 3 ~~k~~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (323)
..+.+||+|||+.|+++|.+||. +|+.|.+ .| +||..+||+||+.|.+...
T Consensus 21 i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~------~l-gRt~~q~knRw~~L~~~~~ 71 (73)
T 2llk_A 21 NHVGKYTPEEIEKLKELRIKHGN-DWATIGA------AL-GRSASSVKDRCRLMKDTCN 71 (73)
T ss_dssp CCCCSSCHHHHHHHHHHHHHHSS-CHHHHHH------HH-TSCHHHHHHHHHHCSCCCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCC-CHHHHHH------Hh-CCCHHHHHHHHHHHHHHcc
Confidence 46889999999999999999999 6999998 47 9999999999998877643
No 23
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.14 E-value=3.2e-11 Score=91.86 Aligned_cols=52 Identities=27% Similarity=0.497 Sum_probs=46.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhcCcccccccCCCCHHhHHHHHHHhhcccc
Q 020653 3 APKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAI 61 (323)
Q Consensus 3 ~~k~~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (323)
..+.+||.|||+.|+++|++||. +|..|.. +|.+||..+|+++|.++.+...
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~------~~~~Rt~~q~k~r~~~~l~~~~ 58 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGR-RWTKISK------LIGSRTVLQVKSYARQYFKNKV 58 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCS-CHHHHHH------HHSSSCHHHHHHHHHHHHHHHS
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc-CHHHHHH------HcCCCCHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999 9999997 4689999999999999887643
No 24
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.14 E-value=6.4e-11 Score=95.24 Aligned_cols=52 Identities=27% Similarity=0.465 Sum_probs=47.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhcCcccccccCCCCHHhHHHHHHHhhccc
Q 020653 3 APKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTA 60 (323)
Q Consensus 3 ~~k~~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~ 60 (323)
-.+++||+|||+.|+.+|++||.++|..|.. +|.+||..||++||++++.+.
T Consensus 2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~------~l~~Rt~~qcr~Rw~~~l~p~ 53 (105)
T 1gv2_A 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAK------HLKGRIGKQCRERWHNHLNPE 53 (105)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHT------TSTTCCHHHHHHHHHHTTCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhh------hhcCCCHHHHHHHHHhccCCc
Confidence 4688999999999999999999999999997 367999999999999987664
No 25
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=4.5e-11 Score=91.39 Aligned_cols=52 Identities=21% Similarity=0.343 Sum_probs=46.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-----CChhhhhcCcccccccCCCCHHhHHHHHHHhhccc
Q 020653 3 APKQKWTAEEEAALKAGVRKHGT-----GKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTA 60 (323)
Q Consensus 3 ~~k~~WT~EEe~~L~~GV~k~G~-----GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~ 60 (323)
..+++||.|||+.|+++|++||. ++|..|.. +|.+||..||++||.+++...
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~------~~~~Rt~~qcr~r~~~~l~~~ 62 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIAD------ELGNRTAKQVASQVQKYFIKL 62 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHH------HHSSSCHHHHHHHHHHHHGGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHH------HhCCCCHHHHHHHHHHHHHHH
Confidence 45789999999999999999996 79999997 467999999999998887764
No 26
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.11 E-value=6.6e-11 Score=96.01 Aligned_cols=51 Identities=27% Similarity=0.496 Sum_probs=46.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhcCcccccccCCCCHHhHHHHHHHhhcccc
Q 020653 5 KQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAI 61 (323)
Q Consensus 5 k~~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (323)
|++||+|||+.|+.+|++||.++|..|.. +|.+||..||++||.|++.+..
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~------~~~~Rt~~qcr~Rw~~~L~p~i 51 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQ------LMITRNPRQCRERWNNYINPAL 51 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHH------HTTTSCHHHHHHHHHHHSSSCC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhh------hcCCCCHHHHHHHHHHHHcccc
Confidence 57999999999999999999999999997 4679999999999999887653
No 27
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=6.1e-11 Score=88.69 Aligned_cols=51 Identities=25% Similarity=0.397 Sum_probs=46.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhcCcccccccCCCCHHhHHHHHHHhhcccc
Q 020653 3 APKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAI 61 (323)
Q Consensus 3 ~~k~~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (323)
..+.+||.|||+.|+.+|++||. +|..|.. |.+||..||++||.+++.+..
T Consensus 7 ~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-------~~gRt~~qcr~Rw~~~l~~~~ 57 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-------IIGRTAAQCLEHYEFLLDKAA 57 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-------HHSSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-------ccCcCHHHHHHHHHHHhChHh
Confidence 46789999999999999999999 9999997 247999999999999988754
No 28
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.09 E-value=1.2e-10 Score=97.51 Aligned_cols=51 Identities=27% Similarity=0.497 Sum_probs=46.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhcCcccccccCCCCHHhHHHHHHHhhcccc
Q 020653 5 KQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAI 61 (323)
Q Consensus 5 k~~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (323)
|++||+|||+.|+.+|++||.++|..|.. .|.+||..||++||+|.+.+..
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~------~~~~Rt~~qcr~Rw~~~l~p~~ 52 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITS------FLPNRSPKQCRERWFNHLDPAV 52 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTT------SCTTSCHHHHHHHHHHHTSTTC
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHH------HHCCCCHHHHHHHHhhccCccc
Confidence 68999999999999999999999999997 3679999999999999887653
No 29
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.07 E-value=1.5e-10 Score=96.55 Aligned_cols=53 Identities=36% Similarity=0.689 Sum_probs=47.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChhhhhcCcccccccCCCCHHhHHHHHHHhhcccc
Q 020653 2 GAPKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAI 61 (323)
Q Consensus 2 g~~k~~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (323)
+.++++||+|||+.|+.+|++||. +|..|.. .|.+||..||++||+|.+.+..
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~------~~~~Rt~~qcr~Rw~~~l~p~~ 60 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAA------TFPNRNARQCRDRWKNYLAPSI 60 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHH------TCTTCCHHHHHHHHHHHTSTTS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHH------HcCCCCHHHHHHHHhhhccccc
Confidence 457899999999999999999999 9999997 3679999999999999886643
No 30
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.06 E-value=1.8e-10 Score=95.90 Aligned_cols=52 Identities=27% Similarity=0.498 Sum_probs=47.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhcCcccccccCCCCHHhHHHHHHHhhccc
Q 020653 3 APKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTA 60 (323)
Q Consensus 3 ~~k~~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~ 60 (323)
..+++||+|||+.|+.+|++||.++|..|.. +|.+||..||++||.+++.+.
T Consensus 25 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~------~l~~Rt~~qcr~Rw~~~l~p~ 76 (128)
T 1h8a_C 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAK------HLKGRIGKQCRERWHNHLNPE 76 (128)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCSCCHHHHHH------HSSSCCHHHHHHHHHHTTCSS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHH------HhcCCcHHHHHHHHHHhcccc
Confidence 4678999999999999999999999999997 467999999999999988764
No 31
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.04 E-value=1.4e-10 Score=90.64 Aligned_cols=48 Identities=15% Similarity=0.311 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhcCcccccccCCCCHHhHHHHHHHhhc
Q 020653 4 PKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINV 58 (323)
Q Consensus 4 ~k~~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k 58 (323)
.+.+||.|||..|+++|++|| ++|..|.. ++.+||..||++||.++..
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~------~v~~RT~~qcr~r~~~~~i 64 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYK-DDWNKVSE------HVGSRTQDECILHFLRLPI 64 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSS-SCHHHHHH------HHSSCCHHHHHHHHTTSCC
T ss_pred cCCCcCHHHHHHHHHHHHHhC-CCHHHHHH------HcCCCCHHHHHHHHHHhcc
Confidence 368999999999999999999 89999997 3578999999999998843
No 32
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.00 E-value=4.9e-10 Score=90.06 Aligned_cols=50 Identities=24% Similarity=0.587 Sum_probs=45.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhcCcccccccCCCCHHhHHHHHHHhhcc
Q 020653 3 APKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVT 59 (323)
Q Consensus 3 ~~k~~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~ 59 (323)
..+.+||+|||+.|+.+|.+||. +|..|.. +|.+||..+|++||+++++.
T Consensus 54 ~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~------~l~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 54 VKKTSWTEEEDRIIYQAHKRLGN-RWAEIAK------LLPGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSS-CHHHHHT------TCTTCCHHHHHHHHHHHTC-
T ss_pred ccccCCCHHHHHHHHHHHHHhCC-CHHHHHH------HcCCCCHHHHHHHHHHHHhc
Confidence 35789999999999999999997 9999997 36899999999999998865
No 33
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.97 E-value=5.9e-10 Score=92.90 Aligned_cols=52 Identities=27% Similarity=0.597 Sum_probs=46.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhcCcccccccCCCCHHhHHHHHHHhhcccc
Q 020653 3 APKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAI 61 (323)
Q Consensus 3 ~~k~~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (323)
..+.+||+|||+.|+.+|.+||. +|..|.. +|.+||..+|++||+++.+..+
T Consensus 60 ~~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia~------~l~gRt~~~~k~rw~~l~~k~~ 111 (126)
T 3osg_A 60 ISHTPWTAEEDALLVQKIQEYGR-QWAIIAK------FFPGRTDIHIKNRWVTISNKLG 111 (126)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCS-CHHHHHT------TSTTCCHHHHHHHHHHHHHHTT
T ss_pred cccccCCHHHHHHHHHHHHHHCc-CHHHHHH------HcCCCCHHHHHHHHHHHHHhcC
Confidence 45789999999999999999996 9999997 3689999999999999987754
No 34
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.97 E-value=6.8e-10 Score=93.01 Aligned_cols=55 Identities=27% Similarity=0.543 Sum_probs=48.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhcCcccccccCCCCHHhHHHHHHHhhcccc-cch
Q 020653 3 APKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAI-WGS 64 (323)
Q Consensus 3 ~~k~~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~~-~~s 64 (323)
..+++||+|||+.|+.+|.+||. +|+.|.. +|.+||..+|++||+++++... .++
T Consensus 52 ~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~------~l~gRt~~~~k~rw~~~l~~~~~~~~ 107 (131)
T 3zqc_A 52 VVKHAWTPEEDETIFRNYLKLGS-KWSVIAK------LIPGRTDNAIKNRWNSSISKRISTNS 107 (131)
T ss_dssp CCCSCCCHHHHHHHHHHHHHSCS-CHHHHTT------TSTTCCHHHHHHHHHHTTGGGCCCCT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHH------HcCCCCHHHHHHHHHHHHHHHhhcCC
Confidence 45789999999999999999997 9999997 3679999999999999988866 443
No 35
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.95 E-value=5.7e-10 Score=90.44 Aligned_cols=51 Identities=25% Similarity=0.565 Sum_probs=46.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhcCcccccccCCCCHHhHHHHHHHhhccc
Q 020653 3 APKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTA 60 (323)
Q Consensus 3 ~~k~~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~ 60 (323)
..+.+||+|||+.|+.+|.+||. +|..|.. +|.+||..+|++||+++.+..
T Consensus 51 i~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~------~l~gRt~~~~k~rw~~l~r~~ 101 (107)
T 2k9n_A 51 LRTDPWSPEEDMLLDQKYAEYGP-KWNKISK------FLKNRSDNNIRNRWMMIARHR 101 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHHTCS-CHHHHHH------HHSSSCHHHHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHhCc-CHHHHHH------HCCCCCHHHHHHHHHHHHhhH
Confidence 35789999999999999999998 9999997 468999999999999998763
No 36
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.92 E-value=9.8e-10 Score=84.88 Aligned_cols=52 Identities=15% Similarity=0.328 Sum_probs=45.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CChhhhhcCcccccccCCCCHHhHHHHHHHhhcccc
Q 020653 4 PKQKWTAEEEAALKAGVRKHGT---GKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAI 61 (323)
Q Consensus 4 ~k~~WT~EEe~~L~~GV~k~G~---GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (323)
.+.+||.||+..|+.+|.+||. .+|..|+. +|.+||..+|++||.+|.....
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~------~vpGRT~~qcr~Ry~~L~~d~~ 71 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIAR------CVPSKSKEDCIARYKLLVSGPS 71 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGG------GCSSSCHHHHHHHHHHHHSSCC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHH------HcCCCCHHHHHHHHHHHHHccc
Confidence 4578999999999999999993 59999998 4689999999999999987643
No 37
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.90 E-value=1.6e-09 Score=90.24 Aligned_cols=50 Identities=24% Similarity=0.580 Sum_probs=45.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhcCcccccccCCCCHHhHHHHHHHhhcc
Q 020653 3 APKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVT 59 (323)
Q Consensus 3 ~~k~~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~ 59 (323)
..+.+||+|||+.|+.+|.+||. +|..|.+ +|.+||..+|++||+++++.
T Consensus 77 ~~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~------~l~gRt~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 77 VKKTSWTEEEDRIIYQAHKRLGN-RWAEIAK------LLPGRTDNAVKNHWNSTMRR 126 (128)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCS-CHHHHGG------GSTTCCHHHHHHHHHTTTTC
T ss_pred cccccCCHHHHHHHHHHHHHHCc-CHHHHHH------HCCCCCHHHHHHHHHHHHhc
Confidence 35789999999999999999998 9999997 46899999999999998865
No 38
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.86 E-value=3e-09 Score=91.43 Aligned_cols=52 Identities=27% Similarity=0.465 Sum_probs=46.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhcCcccccccCCCCHHhHHHHHHHhhccc
Q 020653 3 APKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTA 60 (323)
Q Consensus 3 ~~k~~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~ 60 (323)
..+++||+|||+.|+.+|++||.++|..|.. +|.+||..+|++||.+++.+.
T Consensus 56 ~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~------~l~~Rt~~qcr~Rw~~~l~p~ 107 (159)
T 1h89_C 56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAK------HLKGRIGKQCRERWHNHLNPE 107 (159)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCSCCHHHHHH------TSTTCCHHHHHHHHHHTTCTT
T ss_pred cCCCCCChHHHHHHHHHHHHhCcccHHHHHH------HcCCCCHHHHHHHHHHHhCcc
Confidence 3578999999999999999999989999997 368999999999999987654
No 39
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.36 E-value=2.7e-10 Score=90.45 Aligned_cols=52 Identities=27% Similarity=0.411 Sum_probs=46.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhcCcccccccCCCCHHhHHHHHHHhhcccc
Q 020653 3 APKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAI 61 (323)
Q Consensus 3 ~~k~~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (323)
-.+.+||.|||+.|+.+|.+||. +|..|.. +|.+||..+|+++|.++++...
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~------~l~gRt~~q~k~r~~~~lrk~~ 65 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHGR-NWSAIAR------MVGSKTVSQCKNFYFNYKKRQN 65 (89)
Confidence 35789999999999999999999 9999997 4689999999999999887654
No 40
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.72 E-value=1.3e-08 Score=87.37 Aligned_cols=50 Identities=24% Similarity=0.587 Sum_probs=45.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhcCcccccccCCCCHHhHHHHHHHhhcc
Q 020653 3 APKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVT 59 (323)
Q Consensus 3 ~~k~~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~ 59 (323)
..+.+||+|||..|+.+|.+||. +|..|.+ +|.+||..+|++||..+++.
T Consensus 108 ~~~~~WT~eEd~~L~~~~~~~g~-~W~~Ia~------~l~gRt~~~~knr~~~~~r~ 157 (159)
T 1h89_C 108 VKKTSWTEEEDRIIYQAHKRLGN-RWAEIAK------LLPGRTDNAIKNHWNSTMRR 157 (159)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCS-CHHHHHT------TSTTCCHHHHHHHHHTTTCC
T ss_pred ccccCCChHHHHHHHHHHHHHCC-CHHHHHH------HCCCCCHHHHHHHHHHHHhc
Confidence 35789999999999999999998 9999997 36899999999999998875
No 41
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.62 E-value=2.7e-08 Score=80.08 Aligned_cols=51 Identities=14% Similarity=0.386 Sum_probs=44.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhC---CCChhhhhcCcccccccCCCCHHhHHHHHHHhhccc
Q 020653 4 PKQKWTAEEEAALKAGVRKHG---TGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTA 60 (323)
Q Consensus 4 ~k~~WT~EEe~~L~~GV~k~G---~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~ 60 (323)
.+..||.||+..|+.++.+|| ..+|..|+. .|.+||..+|+.||.+|....
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~------~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVAR------AVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHH------HSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHH------HcCCCCHHHHHHHHHHHHHHH
Confidence 367899999999999999998 457999998 468999999999999997653
No 42
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.55 E-value=5.4e-08 Score=90.33 Aligned_cols=52 Identities=19% Similarity=0.304 Sum_probs=46.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCC-----hhhhhcCcccccccCCCCHHhHHHHHHHhhcccc
Q 020653 4 PKQKWTAEEEAALKAGVRKHGTGK-----WRTILSDPEFSAILHSRSNVDLKDKWRNINVTAI 61 (323)
Q Consensus 4 ~k~~WT~EEe~~L~~GV~k~G~Gk-----W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (323)
.+.+||+|||+.|++.|++||..+ |..|++ +|.|||..+||+||+++++...
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk------~LpGRT~nsIRnRw~~~L~~~l 63 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISH------YVPNHTGNSIRHRFRVYLSKRL 63 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTT------TSTTSCHHHHHHHHHHTTGGGC
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHH------HcCCCCHHHHHHHHHHHHhhhc
Confidence 577999999999999999998853 999997 4789999999999999887765
No 43
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=7.5e-07 Score=65.84 Aligned_cols=50 Identities=20% Similarity=0.183 Sum_probs=43.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhcCcccccccCCCCHHhHHHHHHHhhcc
Q 020653 3 APKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVT 59 (323)
Q Consensus 3 ~~k~~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~ 59 (323)
....+||+||++.+.+++.+||. +|..|.. +|.+||..||...|....+.
T Consensus 10 ~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~------~l~~rt~~~~v~~Yy~~Kk~ 59 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFIQHPK-NFGLIAS------YLERKSVPDCVLYYYLTKKN 59 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHHHSTT-CHHHHHH------HCTTSCHHHHHHHHHHHTCC
T ss_pred ccCCCCCHHHHHHHHHHHHHhCC-CHHHHHH------HcCCCCHHHHHHHHHHhcCC
Confidence 34578999999999999999997 9999986 47899999999999776554
No 44
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.20 E-value=1.4e-06 Score=67.00 Aligned_cols=51 Identities=25% Similarity=0.459 Sum_probs=44.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC---CChhhhhcCcccccccCCCCHHhHHHHHHHhhccc
Q 020653 3 APKQKWTAEEEAALKAGVRKHGT---GKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTA 60 (323)
Q Consensus 3 ~~k~~WT~EEe~~L~~GV~k~G~---GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~ 60 (323)
.....||.||+..|..++.+|+. .+|..|.. ++ +||..||+.+|..|....
T Consensus 6 ~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~------~l-gRt~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAH------EL-GRSVTDVTTKAKQLKDSV 59 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHH------HH-TSCHHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHH------Hh-CCCHHHHHHHHHHHHHhc
Confidence 34678999999999999999994 57999997 24 899999999999997663
No 45
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.93 E-value=8.9e-06 Score=65.61 Aligned_cols=53 Identities=23% Similarity=0.340 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhcCcccccccCCCCHHhHHHHHHHhhccc
Q 020653 6 QKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTA 60 (323)
Q Consensus 6 ~~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~ 60 (323)
.+||.||++.|.+++++||. +|..|..-+.+.. +.+||-.|||+||-.+.+..
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~-~~~Rt~EdLK~RyY~v~~~l 83 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQ-FKKRSVEDLKERYYHICAKL 83 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTT-SCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCC-CCCCCHHHHHHHHHHHHHHH
Confidence 58999999999999999999 9999998544322 35899999999998877654
No 46
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.80 E-value=2e-05 Score=72.69 Aligned_cols=52 Identities=23% Similarity=0.378 Sum_probs=46.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhcCcccccccCCCCHHhHHHHHHHhhcccc
Q 020653 3 APKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAI 61 (323)
Q Consensus 3 ~~k~~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (323)
+...+||+||.+.+++++.+||. +|..|.+ ++.+||..+|+..|.+..+...
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk------~VgTKT~~QcKnfY~~~kKRln 182 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGR-DFQAISD------VIGNKSVVQVKNFFVNYRRRFN 182 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSS-CHHHHHH------HHSSCCHHHHHHHHHHTTTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHH------HcCCCCHHHHHHHHHHHHHHhh
Confidence 34568999999999999999998 9999997 4689999999999998887755
No 47
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.70 E-value=3.5e-05 Score=59.60 Aligned_cols=49 Identities=18% Similarity=0.331 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHHHHHHHhCC---CChhhhhcCcccccccCCCCHHhHHHHHHHhhccc
Q 020653 6 QKWTAEEEAALKAGVRKHGT---GKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTA 60 (323)
Q Consensus 6 ~~WT~EEe~~L~~GV~k~G~---GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~ 60 (323)
..||.+|+.+|..++..|+. ++|..|.. .+.+||..+|+.+|..|.+..
T Consensus 9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~------~V~gKT~eE~~~hY~~l~~~~ 60 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAA------AVGSRSPEECQRKYMENPRGK 60 (73)
T ss_dssp SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHH------HTTTSCHHHHHHHHHHSSSSS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCccHHHHHHH------HcCCCCHHHHHHHHHHHHhcc
Confidence 57999999999999999986 68999997 367899999999999996654
No 48
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.69 E-value=6e-05 Score=66.77 Aligned_cols=55 Identities=22% Similarity=0.405 Sum_probs=44.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhcCcccc--cc------cCCCCHHhHHHHHHHhhcc
Q 020653 5 KQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFS--AI------LHSRSNVDLKDKWRNINVT 59 (323)
Q Consensus 5 k~~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~--~~------l~~RT~vdLKDKWRnl~k~ 59 (323)
...||.+||..|+.||.+||-|+|..|..||.++ +- ...++++.|..|-..|++.
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~ 196 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKL 196 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHH
Confidence 3469999999999999999999999999999843 21 2357788999996655553
No 49
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.38 E-value=0.00017 Score=53.24 Aligned_cols=49 Identities=20% Similarity=0.366 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCChhhhhcCcccccccCCCCHHhHHHHHHHhhc
Q 020653 5 KQKWTAEEEAALKAGVRKH--------GTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINV 58 (323)
Q Consensus 5 k~~WT~EEe~~L~~GV~k~--------G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k 58 (323)
|.+||.|||..|++-|.+| |..-|+.|.+. .+.++|-..++|||++-++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~-----~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKS-----SLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHS-----CSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHh-----HCCCCCHHHHHHHHHHHcc
Confidence 7899999999999999999 77789999871 2479999999999987553
No 50
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.20 E-value=0.00014 Score=56.55 Aligned_cols=55 Identities=25% Similarity=0.335 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC----C-----ChhhhhcCcccccccCCCCHHhHHHHHHHhhccc
Q 020653 4 PKQKWTAEEEAALKAGVRKHGT----G-----KWRTILSDPEFSAILHSRSNVDLKDKWRNINVTA 60 (323)
Q Consensus 4 ~k~~WT~EEe~~L~~GV~k~G~----G-----kW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~ 60 (323)
....||.+|+..|+.....+-. | .|..|.. .+...=.+||+.||++||.||.+.-
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~--~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISS--KMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH--HHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHH--HHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 4578999999999999975322 1 7999987 2221113799999999999999874
No 51
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=97.18 E-value=0.0002 Score=67.45 Aligned_cols=32 Identities=44% Similarity=0.771 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCChhhhhcCcccc
Q 020653 7 KWTAEEEAALKAGVRKHGTGKWRTILSDPEFS 38 (323)
Q Consensus 7 ~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~ 38 (323)
.|+.+||..|+.||.+||-|+|..|..||.+.
T Consensus 170 ~W~~~dD~~LLvGIykyGyG~We~Ir~Dp~L~ 201 (270)
T 2xb0_X 170 NWTKEEDEKLLIGVFKYGYGSWTQIRDDPFLG 201 (270)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHCTTTC
T ss_pred CcChHHHHHHHHHHHHHcCCcHHHHhcCcccC
Confidence 39999999999999999999999999999764
No 52
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.11 E-value=0.00047 Score=55.59 Aligned_cols=52 Identities=23% Similarity=0.355 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhcCcccccccCCCCHHhHHHHHHHhhcc
Q 020653 6 QKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVT 59 (323)
Q Consensus 6 ~~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~ 59 (323)
..||.||+..|.+.+++|+- +|--|..-+.+.. +..||-.|||+||-.+.+.
T Consensus 31 ~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~-~~~RtvEdLK~RYY~V~~~ 82 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQ-FKKRSVEDLKERYYHICAK 82 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTT-SCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCC-CCCCCHHHHHHHHHHHHHH
Confidence 47999999999999999998 9999998655432 4589999999999766655
No 53
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.00 E-value=0.0016 Score=48.33 Aligned_cols=51 Identities=20% Similarity=0.340 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhcCcccccccCCCCHHhHHHHHHHhhccc
Q 020653 4 PKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTA 60 (323)
Q Consensus 4 ~k~~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~ 60 (323)
....||+||-+...+|+.+||. +|..|..+ ++.+||..||..-|-...+..
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~-----~v~~Kt~~~~v~fYY~wKkt~ 58 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGK-NFFRIRKE-----LLPNKETGELITFYYYWKKTS 58 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCS-CHHHHHHH-----SCTTSCHHHHHHHHHHHHCSS
T ss_pred CCCCcCHHHHHHHHHHHHHhCc-cHHHHHHH-----HcCCCcHHHHHHHHhcccCCC
Confidence 3468999999999999999999 99999972 367999999998876555543
No 54
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.66 E-value=0.0032 Score=47.68 Aligned_cols=53 Identities=19% Similarity=0.317 Sum_probs=44.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhcCcccccccCCCCHHhHHHHHHHhhcccc
Q 020653 3 APKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAI 61 (323)
Q Consensus 3 ~~k~~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (323)
.....||+||-+....|+.+||. +|..|..+ ++.+||..||..-|-...+...
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~-----~v~~Kt~~~~v~fYY~wKkt~~ 58 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYGK-DFNDIRQD-----FLPWKSLTSIIEYYYMWKTTDR 58 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHT-----TCSSSCHHHHHHHHHHHHTCCS
T ss_pred cCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHH-----HcCCCCHHHHHHHHHhhcCCch
Confidence 34568999999999999999999 99999973 3679999999998875555443
No 55
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.65 E-value=0.0014 Score=62.61 Aligned_cols=57 Identities=18% Similarity=0.331 Sum_probs=47.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CChhhhh----cCccc--ccccCCCCHHhHHHHHHHhhccc
Q 020653 4 PKQKWTAEEEAALKAGVRKHGT---GKWRTIL----SDPEF--SAILHSRSNVDLKDKWRNINVTA 60 (323)
Q Consensus 4 ~k~~WT~EEe~~L~~GV~k~G~---GkW~~I~----~~~~f--~~~l~~RT~vdLKDKWRnl~k~~ 60 (323)
+.+.||+|||..|+-++.+||. |+|..|. ..|.| .-||..||+.+|..|=..|.+..
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~i 276 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLI 276 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHH
Confidence 4568999999999999999999 9999995 34443 33458999999999998887653
No 56
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=96.50 E-value=0.0026 Score=64.22 Aligned_cols=51 Identities=24% Similarity=0.388 Sum_probs=44.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhcCcccccccCCCCHHhHHHHHHHhhcccc
Q 020653 4 PKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAI 61 (323)
Q Consensus 4 ~k~~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (323)
...+||+||-+.+++||.+||. +|..|.. ++..||..||+.-|.+..+..+
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGk-dw~~IA~------~VgTKT~~Qvk~fy~~~kkr~~ 429 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGR-DFQAISD------VIGNKSVVQVKNFFVNYRRRFN 429 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTT-CHHHHHH------HHSSCCHHHHHHHHHHTTTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-CHHHHHH------HhCCCCHHHHHHHHHHHHHHhC
Confidence 3568999999999999999999 9999997 3678999999999987766654
No 57
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=96.18 E-value=0.0015 Score=50.58 Aligned_cols=43 Identities=14% Similarity=0.476 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCC---ChhhhhcCcccccccCCCCHHhHHHHHH
Q 020653 6 QKWTAEEEAALKAGVRKHGTG---KWRTILSDPEFSAILHSRSNVDLKDKWR 54 (323)
Q Consensus 6 ~~WT~EEe~~L~~GV~k~G~G---kW~~I~~~~~f~~~l~~RT~vdLKDKWR 54 (323)
..||.||+++|..++.+|+.| .|.+|.. .+.+||..+|+..|.
T Consensus 21 ~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~------~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 21 RPWKFSENIAFEIALSFTNKDTPDRWKKVAQ------YVKGRTPEEVKKHYE 66 (74)
T ss_dssp -CCCTTHHHHHHHHTSSSCSSCCSSSTTTGG------GSCSSCHHHHHGGGC
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHH------HcCCCCHHHHHHHHH
Confidence 479999999999999999886 8999997 467999999998763
No 58
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=95.98 E-value=0.011 Score=47.10 Aligned_cols=47 Identities=13% Similarity=0.245 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhcCcccccccCCCCHHhHHHHHHHhhc
Q 020653 5 KQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINV 58 (323)
Q Consensus 5 k~~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k 58 (323)
...||+||-+.+.+++..||. +|..|.. +|.+||..||-.-|-...+
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~------~l~~Kt~~~cV~~YY~~Kk 89 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK-NFGLIAS------FLERKTVAECVLYYYLTKK 89 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT-CHHHHHH------TCTTCCHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHHH------HcCCCCHHHHHHHHhcccc
Confidence 467999999999999999998 9999975 4789999999977644333
No 59
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.27 E-value=0.014 Score=57.19 Aligned_cols=57 Identities=19% Similarity=0.248 Sum_probs=46.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CChhhhhc----Cccc--ccccCCCCHHhHHHHHHHhhccc
Q 020653 4 PKQKWTAEEEAALKAGVRKHGT---GKWRTILS----DPEF--SAILHSRSNVDLKDKWRNINVTA 60 (323)
Q Consensus 4 ~k~~WT~EEe~~L~~GV~k~G~---GkW~~I~~----~~~f--~~~l~~RT~vdLKDKWRnl~k~~ 60 (323)
+.+.||.+||..|+-++.+||. |+|..|.. .|.| .=||..||+..|..|=..|++..
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~I 292 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCL 292 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHH
Confidence 4568999999999999999999 99999854 3444 33458999999999998887653
No 60
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F
Probab=94.40 E-value=0.087 Score=42.17 Aligned_cols=58 Identities=16% Similarity=0.226 Sum_probs=42.5
Q ss_pred CCCCChHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCC----CchhHHHHHHHHHHhhhhcCceeec
Q 020653 147 EPVARLDKLILEAISNLKEPNGSDRASIASYIEDQYW----APANLRKLLATKLKFLSANGTLIKA 208 (323)
Q Consensus 147 ~~hP~Y~~MI~EAI~aLker~GSS~~AI~kyIe~~y~----vp~nf~~lL~~aLKrlVasGkLvkv 208 (323)
++.-+|..||..||.... .++.++.-|.+||+++|. .+..++.-|++.|-- ++-|+++
T Consensus 3 KPp~SY~~LI~~AI~~sp-~~~ltL~eIY~~i~~~fpyyr~~~~gWkNSIRHNLSl---n~~F~kv 64 (93)
T 2a07_F 3 RPPFTYATLIRQAIMESS-DRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSL---HKCFVRV 64 (93)
T ss_dssp CCSCCHHHHHHHHHHHST-TSCBCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CTTBCCE
T ss_pred CCCCCHHHHHHHHHHhCC-CCCccHHHHHHHHHHhCCccccCCCccccccceeeeh---hhceeec
Confidence 345689999999999854 456899999999999985 356677667666532 3445554
No 61
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens}
Probab=94.28 E-value=0.086 Score=45.24 Aligned_cols=73 Identities=19% Similarity=0.268 Sum_probs=50.5
Q ss_pred CCCCCCCCCChHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCC-----CchhHHHHHHHHHHhhhhcCceeecc-----c-
Q 020653 142 ASGSKEPVARLDKLILEAISNLKEPNGSDRASIASYIEDQYW-----APANLRKLLATKLKFLSANGTLIKAK-----H- 210 (323)
Q Consensus 142 ~~~~~~~hP~Y~~MI~EAI~aLker~GSS~~AI~kyIe~~y~-----vp~nf~~lL~~aLKrlVasGkLvkvK-----g- 210 (323)
.+...++.-+|..||..||....+ ++.++..|.+||+++|. ....++.-|++.|- -+.-|+++. |
T Consensus 13 ~~~~~KPpySYa~LI~~AI~~sp~-~~LTL~eIY~~I~~~fPyyr~~~~~gWqNSIRHNLS---ln~~F~r~~~~~GKg~ 88 (142)
T 3g73_A 13 NSVSERPPYSYMAMIQFAINSTER-KRMTLKDIYTWIEDHFPYFKHIAKPGWKNSIRHNLS---LHDMFVRETSANGKVS 88 (142)
T ss_dssp -CTTSCCSSCHHHHHHHHHHTSTT-SEECHHHHHHHHHHHCTHHHHTSCTTHHHHHHHHHH---HCTTEEEEECTTSCCE
T ss_pred ccCCCCCCCCHHHHHHHHHHhCCC-CCcCHHHHHHHHHHhCCCccccCCCCccchhhhhhh---hhhhheecCCCCCCCc
Confidence 455566677899999999988554 44899999999999996 35567777766553 345565542 3
Q ss_pred ccccCCCC
Q 020653 211 KYRITPNT 218 (323)
Q Consensus 211 syKl~~~~ 218 (323)
-+.|.++.
T Consensus 89 ~W~i~p~~ 96 (142)
T 3g73_A 89 FWTIHPSA 96 (142)
T ss_dssp EEEECTTT
T ss_pred eEEECccc
Confidence 34665543
No 62
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=94.21 E-value=0.07 Score=42.96 Aligned_cols=53 Identities=17% Similarity=0.356 Sum_probs=45.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC--CChhhhhcCcccccccCCCCHHhHHHHHHHhhccc
Q 020653 2 GAPKQKWTAEEEAALKAGVRKHGT--GKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTA 60 (323)
Q Consensus 2 g~~k~~WT~EEe~~L~~GV~k~G~--GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~ 60 (323)
|..-.-||-|||..++...++-|. -.|..|.+ .|.+|+..++++|++.|.+..
T Consensus 30 Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~------~L~Nks~nqV~~RFq~Lm~Lf 84 (95)
T 1ug2_A 30 GEKVVLWTREADRVILTMCQEQGAQPHTFSVISQ------QLGNKTPVEVSHRFRELMQLF 84 (95)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHH------HHSSCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeccccCHHHHHHHHhcCCChhHHHHHHH------HHccCCHHHHHHHHHHHHHHH
Confidence 445567999999999999999987 47888887 467899999999999998764
No 63
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A
Probab=93.90 E-value=0.12 Score=42.62 Aligned_cols=60 Identities=22% Similarity=0.239 Sum_probs=45.7
Q ss_pred CCCCCCChHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCC----CchhHHHHHHHHHHhhhhcCceeec
Q 020653 145 SKEPVARLDKLILEAISNLKEPNGSDRASIASYIEDQYW----APANLRKLLATKLKFLSANGTLIKA 208 (323)
Q Consensus 145 ~~~~hP~Y~~MI~EAI~aLker~GSS~~AI~kyIe~~y~----vp~nf~~lL~~aLKrlVasGkLvkv 208 (323)
..++.-+|..||..||.... .+..++.-|.+||+++|+ .+..++.-|++.|- -+.-|++|
T Consensus 14 ~~KPp~SYa~LI~~AI~~sp-~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLS---ln~~F~Kv 77 (111)
T 2c6y_A 14 DSKPPYSYAQLIVQAITMAP-DKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLS---LNRYFIKV 77 (111)
T ss_dssp CCCCSSCHHHHHHHHHHTST-TSCEEHHHHHHHHHHHCTTSCTTCHHHHHHHHHHHH---HSTTEEEE
T ss_pred CCCCCCCHHHHHHHHHHhCC-CCCCcHHHHHHHHHHcCCccccCCCeeecchhHHhh---hhhhhccc
Confidence 35556689999999999954 446899999999999996 36677777776654 34566666
No 64
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=93.43 E-value=0.16 Score=38.18 Aligned_cols=53 Identities=19% Similarity=0.291 Sum_probs=41.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCC--hhhhhcCcccccccCCCCHHhHHHH---HHHhhc
Q 020653 2 GAPKQKWTAEEEAALKAGVRKHGTGK--WRTILSDPEFSAILHSRSNVDLKDK---WRNINV 58 (323)
Q Consensus 2 g~~k~~WT~EEe~~L~~GV~k~G~Gk--W~~I~~~~~f~~~l~~RT~vdLKDK---WRnl~k 58 (323)
.++|-.||+|.-+..+++|++.|..+ |+.|++ .++ ..+.|..+++.+ ||...+
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~--~M~--v~gLT~~~VkSHLQKYR~~l~ 61 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILD--LMN--VDKLTRENVASHLQKFRVALK 61 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHH--HHC--CTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHH--HcC--CCCCCHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999532 789987 222 368899999865 555443
No 65
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A
Probab=93.38 E-value=0.17 Score=41.09 Aligned_cols=58 Identities=21% Similarity=0.226 Sum_probs=44.3
Q ss_pred CCCCChHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCC----CchhHHHHHHHHHHhhhhcCceeec
Q 020653 147 EPVARLDKLILEAISNLKEPNGSDRASIASYIEDQYW----APANLRKLLATKLKFLSANGTLIKA 208 (323)
Q Consensus 147 ~~hP~Y~~MI~EAI~aLker~GSS~~AI~kyIe~~y~----vp~nf~~lL~~aLKrlVasGkLvkv 208 (323)
++.-+|..||..||.... .++.++.-|.+||+++|+ .+..++.-|+..|-- +.-|++|
T Consensus 3 KPp~SY~~LI~~AI~~sp-~~~LtL~eIY~~I~~~fpyyr~~~~gWqNSIRHNLSl---n~~F~kv 64 (102)
T 1vtn_C 3 KPPYSYISLITMAIQQAP-GKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSF---NDCFVKV 64 (102)
T ss_dssp CCSSCHHHHHHHHHHTST-TSCBCHHHHHHHHHHHCGGGGSCHHHHHHHHHHHHHH---CTTEEEE
T ss_pred CcCCCHHHHHHHHHHhCC-CCCCcHHHHHHHHHHcCCccccCCCchhhhhhhhhhh---ccceEec
Confidence 445689999999999753 445899999999999986 356677777766643 5667766
No 66
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=93.32 E-value=0.06 Score=47.33 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhC--CCChhhhhcCcccccccCCCCHHhHHHHHHHhhcc
Q 020653 4 PKQKWTAEEEAALKAGVRKHG--TGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVT 59 (323)
Q Consensus 4 ~k~~WT~EEe~~L~~GV~k~G--~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~ 59 (323)
....||..|...|+.++.+|| .+.|..|..+.. |.++|..++++=++.+...
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~----L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAE----LVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTT----CTTSCHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhc----cCCCCHHHHHHHHHHHHHH
Confidence 457899999999999999999 589999999765 4689999999866655443
No 67
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=93.05 E-value=0.18 Score=41.51 Aligned_cols=58 Identities=17% Similarity=0.214 Sum_probs=42.9
Q ss_pred CCCCChHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCC----CchhHHHHHHHHHHhhhhcCceeec
Q 020653 147 EPVARLDKLILEAISNLKEPNGSDRASIASYIEDQYW----APANLRKLLATKLKFLSANGTLIKA 208 (323)
Q Consensus 147 ~~hP~Y~~MI~EAI~aLker~GSS~~AI~kyIe~~y~----vp~nf~~lL~~aLKrlVasGkLvkv 208 (323)
++.-+|..||..||.... .+..++.-|.+||+++|+ -+..++.-|+..|-- +.-|++|
T Consensus 3 KPp~SYa~LI~~AI~~sp-~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLSl---n~~F~Kv 64 (109)
T 2hfh_A 3 KPPYSYIALITMAILQSP-QKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSL---NDCFVKI 64 (109)
T ss_dssp CCCCCHHHHHHHHHHTCS-SSCBCHHHHHHHHHTTCHHHHTTCGGGHHHHHHHHHH---HTCCBCC
T ss_pred CCCCCHHHHHHHHHHhCC-CCCCcHHHHHHHHHHhcchhccCCcccchhhhhhhhh---hhhhhcC
Confidence 455689999999998753 456899999999999986 466777777665532 3455554
No 68
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=92.84 E-value=0.15 Score=41.11 Aligned_cols=57 Identities=18% Similarity=0.211 Sum_probs=41.1
Q ss_pred CCCChHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCC----CchhHHHHHHHHHHhhhhcCceeec
Q 020653 148 PVARLDKLILEAISNLKEPNGSDRASIASYIEDQYW----APANLRKLLATKLKFLSANGTLIKA 208 (323)
Q Consensus 148 ~hP~Y~~MI~EAI~aLker~GSS~~AI~kyIe~~y~----vp~nf~~lL~~aLKrlVasGkLvkv 208 (323)
+.-+|..||..||.... .++.++.-|.+||+++|+ -+..++.-|++.|-- +.-|++|
T Consensus 3 Pp~SY~~LI~~AI~~sp-~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLSl---n~~F~Kv 63 (97)
T 2hdc_A 3 PPYSYIALITMAILQSP-QKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSL---NDCFVKI 63 (97)
T ss_dssp CCCCHHHHHHHHHHTCT-TTCBCHHHHHHHHHHHCHHHHHHCSSHHHHHHHHHHH---HHCCEEE
T ss_pred CCCCHHHHHHHHHHhCC-CCCCCHHHHHHHHHHhchhhccCCcceehhhhhhhhh---hhheeec
Confidence 45689999999998753 456899999999999996 245566666665532 2345554
No 69
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=92.46 E-value=0.12 Score=48.06 Aligned_cols=51 Identities=18% Similarity=0.301 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHH-h--------------------------------CC------------------------CC
Q 020653 5 KQKWTAEEEAALKAGVRK-H--------------------------------GT------------------------GK 27 (323)
Q Consensus 5 k~~WT~EEe~~L~~GV~k-~--------------------------------G~------------------------Gk 27 (323)
|.+||.|||-.|...|.+ | |. +.
T Consensus 94 K~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~gp~~~~~ 173 (246)
T 1ign_A 94 KRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQSRRGPIAREF 173 (246)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCCCCCCCCCTTH
T ss_pred cCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccccccCcchHHH
Confidence 789999999999999988 2 11 37
Q ss_pred hhhhhcCcccccccCCCCHHhHHHHHHHhhcccc
Q 020653 28 WRTILSDPEFSAILHSRSNVDLKDKWRNINVTAI 61 (323)
Q Consensus 28 W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (323)
|+.|.+ .|.+||.+..+||||.+++..+
T Consensus 174 fk~ia~------~~P~HT~~SWRdRyrKfl~~~g 201 (246)
T 1ign_A 174 FKHFAE------EHAAHTENAWRDRFRKFLLAYG 201 (246)
T ss_dssp HHHHHH------HTTTSCHHHHHHHHHHTHHHHC
T ss_pred HHHHHH------HCCCCChhhHHHHHHHHHhhcC
Confidence 888887 3579999999999999887654
No 70
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=92.10 E-value=0.15 Score=41.17 Aligned_cols=57 Identities=21% Similarity=0.248 Sum_probs=39.2
Q ss_pred CCCChHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCC----CchhHHHHHHHHHHhhhhcCceeec
Q 020653 148 PVARLDKLILEAISNLKEPNGSDRASIASYIEDQYW----APANLRKLLATKLKFLSANGTLIKA 208 (323)
Q Consensus 148 ~hP~Y~~MI~EAI~aLker~GSS~~AI~kyIe~~y~----vp~nf~~lL~~aLKrlVasGkLvkv 208 (323)
+.-+|..||..||....+ +..++.-|.+||+++|. .+..++.-|++.|-- +.-|++|
T Consensus 3 Pp~SY~~LI~~AI~~sp~-~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLSl---n~~F~kv 63 (100)
T 1kq8_A 3 PPYSYIALITMAIRDSAG-GRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSL---NDCFVKV 63 (100)
T ss_dssp ----CHHHHHHHHTTSSS-SCBCHHHHHHHHHHHCTTGGGTCSCCHHHHHHHHHH---HTCCEEC
T ss_pred CCCCHHHHHHHHHHhCCC-CCCcHHHHHHHHHHhCccccCCCCceecccchheeh---hheeeec
Confidence 445799999999998544 45899999999999997 355566666655532 3456555
No 71
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C*
Probab=91.78 E-value=0.41 Score=39.26 Aligned_cols=60 Identities=18% Similarity=0.150 Sum_probs=44.6
Q ss_pred CCCCCChHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCC----C-----chhHHHHHHHHHHhhhhcCceeecc
Q 020653 146 KEPVARLDKLILEAISNLKEPNGSDRASIASYIEDQYW----A-----PANLRKLLATKLKFLSANGTLIKAK 209 (323)
Q Consensus 146 ~~~hP~Y~~MI~EAI~aLker~GSS~~AI~kyIe~~y~----v-----p~nf~~lL~~aLKrlVasGkLvkvK 209 (323)
.+..-+|..||..||....++ ..++..|..||+++|. . ...++.-|+..|- -+.-|++|.
T Consensus 23 ~kPpySY~~LI~~AI~~sp~~-~LtL~eIY~~I~~~fPyyr~~~~~~s~~gWqNSIRHNLS---ln~~F~Kv~ 91 (110)
T 3l2c_A 23 AWGNQSYAELISQAIESAPEK-RLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLS---LHSKFIKVH 91 (110)
T ss_dssp TTBSCCHHHHHHHHHHHSTTS-CBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHH---HCTTEEEEC
T ss_pred CCCCCCHHHHHHHHHHhCCcc-CcCHHHHHHHHHHhCchhhcCccccCCCCcccchhhhcc---HhhhheeCC
Confidence 344568999999999996654 4999999999999985 1 2457777776653 346677764
No 72
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}
Probab=91.77 E-value=0.45 Score=37.30 Aligned_cols=59 Identities=19% Similarity=0.155 Sum_probs=43.5
Q ss_pred CCCCChHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCC----C-----chhHHHHHHHHHHhhhhcCceeecc
Q 020653 147 EPVARLDKLILEAISNLKEPNGSDRASIASYIEDQYW----A-----PANLRKLLATKLKFLSANGTLIKAK 209 (323)
Q Consensus 147 ~~hP~Y~~MI~EAI~aLker~GSS~~AI~kyIe~~y~----v-----p~nf~~lL~~aLKrlVasGkLvkvK 209 (323)
+..-+|..||..||....++ ..++..|..||+++|+ . ...++.-|++.|- -+.-|++|.
T Consensus 5 kp~~SY~~LI~~Ai~~sp~~-~ltL~eIY~~i~~~fpyy~~~~~~~s~~gWqNSIRHNLS---ln~~F~Kv~ 72 (85)
T 3bpy_A 5 WGNQSYAELISQAIESAPEK-RLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLS---LHSKFIKVH 72 (85)
T ss_dssp TBSCCHHHHHHHHHHHSTTS-CBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHH---HCTTEEEEC
T ss_pred cCCCCHHHHHHHHHHhCCcC-CccHHHHHHHHHHhCcchhcCccCccCCCcchhhhhhcc---HhhhheeCC
Confidence 34568999999999996554 4899999999999985 1 2356767766553 346677764
No 73
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=91.04 E-value=0.031 Score=42.75 Aligned_cols=51 Identities=10% Similarity=0.256 Sum_probs=43.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC--CChhhhhcCcccccccCCCCHHhHHHHHHHhhccc
Q 020653 3 APKQKWTAEEEAALKAGVRKHGT--GKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTA 60 (323)
Q Consensus 3 ~~k~~WT~EEe~~L~~GV~k~G~--GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~ 60 (323)
-.-..||-|||..|+...++-|. -.|..|.. .| +||..|+++|++.|.+..
T Consensus 12 e~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~------~L-nks~~QV~~RF~~Lm~Lf 64 (70)
T 2lr8_A 12 EIIILWTRNDDRVILLECQKRGPSSKTFAYLAA------KL-DKNPNQVSERFQQLMKLF 64 (70)
Confidence 34457999999999999999998 47888876 35 899999999999988764
No 74
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A
Probab=90.75 E-value=0.56 Score=38.97 Aligned_cols=58 Identities=14% Similarity=0.110 Sum_probs=42.6
Q ss_pred CCCCChHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCC----Cc-----hhHHHHHHHHHHhhhhcCceeec
Q 020653 147 EPVARLDKLILEAISNLKEPNGSDRASIASYIEDQYW----AP-----ANLRKLLATKLKFLSANGTLIKA 208 (323)
Q Consensus 147 ~~hP~Y~~MI~EAI~aLker~GSS~~AI~kyIe~~y~----vp-----~nf~~lL~~aLKrlVasGkLvkv 208 (323)
++..+|..||..||..-. .+...+.-|..||+++|+ -+ ..++.-|++.|- -+.-|++|
T Consensus 11 kPp~SYa~LI~~AI~~sp-~~~LTL~eIY~~I~~~fPyyr~~~d~~s~~gWqNSIRHNLS---ln~~F~Kv 77 (117)
T 3coa_C 11 WGNLSYADLITKAIESSA-EKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLS---LHSKFIRV 77 (117)
T ss_dssp TBSCCHHHHHHHHHHTST-TSCBCHHHHHHHHHHHCGGGTTCCSHHHHHHHHHHHHHHHH---HCTTEEEE
T ss_pred CCCCCHHHHHHHHHHhCC-CCCccHHHHHHHHHHhCcccccCCCCcccccchhccchhee---cchhhccc
Confidence 345689999999999743 445899999999999985 12 456666666553 34667776
No 75
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=88.55 E-value=0.73 Score=43.19 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=47.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC--CChhhhhcCcccccccCCCCHHhHHHHHHHhhcccc
Q 020653 4 PKQKWTAEEEAALKAGVRKHGT--GKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAI 61 (323)
Q Consensus 4 ~k~~WT~EEe~~L~~GV~k~G~--GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (323)
|++.||..|...|++.+.+||. ++|..|..|.. |..++...++.=+..|...+.
T Consensus 2 p~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~----L~~ks~~~i~~~~~~li~~c~ 57 (270)
T 2xb0_X 2 PLGSIGESEVRALYKAILKFGNLKEILDELIADGT----LPVKSFEKYGETYDEMMEAAK 57 (270)
T ss_dssp TTCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTS----SCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcc----cccCCHHHHHHHHHHHHHHHH
Confidence 7899999999999999999994 79999999865 568999999999987776554
No 76
>1e17_A AFX; DNA binding domain, winged helix; NMR {Homo sapiens} SCOP: a.4.5.14
Probab=83.54 E-value=0.98 Score=39.09 Aligned_cols=58 Identities=19% Similarity=0.180 Sum_probs=42.1
Q ss_pred CCCChHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCCC---------chhHHHHHHHHHHhhhhcCceeecc
Q 020653 148 PVARLDKLILEAISNLKEPNGSDRASIASYIEDQYWA---------PANLRKLLATKLKFLSANGTLIKAK 209 (323)
Q Consensus 148 ~hP~Y~~MI~EAI~aLker~GSS~~AI~kyIe~~y~v---------p~nf~~lL~~aLKrlVasGkLvkvK 209 (323)
..-+|..||..||....+ +..++.-|..||+++|.- ...++.-|+..|- -+.-|++|.
T Consensus 41 Pp~SYa~LI~~AI~sSp~-k~LTL~eIY~wI~~~fPYfr~~~d~~s~~gWqNSIRHNLS---Lnk~F~Kv~ 107 (150)
T 1e17_A 41 GNQSYAELISQAIESAPE-KRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLS---LHSKFIKVH 107 (150)
T ss_dssp CSCCHHHHHHHHHHHSSS-CCEEHHHHHHHHHHHCGGGHHHHTSTTHHHHHHHHHHHHH---SSTTEEEEC
T ss_pred CCCCHHHHHHHHHHhCCC-CCccHHHHHHHHHHhCchhccCCCCccccchhhccceeee---eeeeeEecC
Confidence 456899999999998544 458999999999999951 1345556665543 346677764
No 77
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=70.29 E-value=0.9 Score=45.89 Aligned_cols=44 Identities=20% Similarity=0.413 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhcCcccccccCCCCHHhHHHHHHHh
Q 020653 6 QKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNI 56 (323)
Q Consensus 6 ~~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl 56 (323)
..||++|...+..++.+||. +|..|.+ +|.+||-.+|-.-|-..
T Consensus 190 d~WT~eE~~lFe~al~~yGK-dF~~I~~------~lp~Ksv~e~V~yYY~W 233 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFHGK-TFHRIQQ------MLPDKSIASLVKFYYSW 233 (482)
T ss_dssp ---------------------------------------------------
T ss_pred cccCHHHHHHHHHHHHHcCc-cHHHHHH------HcCCCCHHHHHHHhccc
Confidence 47999999999999999999 9999986 47899999998765433
No 78
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=59.14 E-value=13 Score=27.68 Aligned_cols=58 Identities=21% Similarity=0.327 Sum_probs=45.6
Q ss_pred hHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCCCchhHHHHHHHHHHhhhhcCceeecc---cccccCC
Q 020653 152 LDKLILEAISNLKEPNGSDRASIASYIEDQYWAPANLRKLLATKLKFLSANGTLIKAK---HKYRITP 216 (323)
Q Consensus 152 Y~~MI~EAI~aLker~GSS~~AI~kyIe~~y~vp~nf~~lL~~aLKrlVasGkLvkvK---gsyKl~~ 216 (323)
.+..|++.|..+.+..+.+...|++-+. ++ ++-++.+|.+|..+|.|..+. +.|.+.+
T Consensus 15 ~~~~IL~~L~~~~~~~~~t~~eLA~~Lg----vs---~~tV~~~L~~L~~~G~I~~~g~~~~~W~i~~ 75 (77)
T 1qgp_A 15 QEQRILKFLEELGEGKATTAHDLSGKLG----TP---KKEINRVLYSLAKKGKLQKEAGTPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHHCSSSCEEHHHHHHHHC----CC---HHHHHHHHHHHHHHTSEEEECSSSCEEEECC
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHC----cC---HHHHHHHHHHHHHCCCEEecCCCCCceEecC
Confidence 3567889999988888899988888765 44 457899999999999998763 3566654
No 79
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=57.88 E-value=17 Score=28.12 Aligned_cols=57 Identities=18% Similarity=0.158 Sum_probs=45.0
Q ss_pred ChHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCCCchhHHHHHHHHHHhhhhcCceeecccccccCC
Q 020653 151 RLDKLILEAISNLKEPNGSDRASIASYIEDQYWAPANLRKLLATKLKFLSANGTLIKAKHKYRITP 216 (323)
Q Consensus 151 ~Y~~MI~EAI~aLker~GSS~~AI~kyIe~~y~vp~nf~~lL~~aLKrlVasGkLvkvKgsyKl~~ 216 (323)
+..++|.+-|..+.+ |..+..|+..+.=+ .+.++..|..|+.+|-+.+..+.|.|.+
T Consensus 5 s~~eIi~~IL~~i~~--~~~~t~La~~~~ls-------~~~~~~~l~~L~~~GLI~~~~~~~~LT~ 61 (95)
T 1r7j_A 5 SKLEIIQAILEACKS--GSPKTRIMYGANLS-------YALTGRYIKMLMDLEIIRQEGKQYMLTK 61 (95)
T ss_dssp CHHHHHHHHHHHHTT--CBCHHHHHHHHTCC-------HHHHHHHHHHHHHTTSEEEETTEEEECH
T ss_pred CHHHHHHHHHHHHHc--CCCHHHHHHHhCcC-------HHHHHHHHHHHHHCCCeEEECCeeEECh
Confidence 457888888888874 38888887766433 2467888999999999999988888855
No 80
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=57.81 E-value=15 Score=35.00 Aligned_cols=47 Identities=13% Similarity=0.164 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhcCcccccccCCCCHHhHHHHHHHhhc
Q 020653 6 QKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINV 58 (323)
Q Consensus 6 ~~WT~EEe~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~k 58 (323)
..||-.+-..++.++.+||...|..|+.+ +.+.|..+++.-...+..
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~e------v~~Kt~eEV~~Y~~vFw~ 157 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKD------VEGKTPEEVIEYNAVFWE 157 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTS------STTCCHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHH------hcCCCHHHHHHHHHHHHH
Confidence 46999999999999999999999999983 358999999876554443
No 81
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=53.11 E-value=20 Score=27.56 Aligned_cols=51 Identities=14% Similarity=0.135 Sum_probs=40.2
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHhhCCCchhHHHHHHHHHHhhhhcCceeeccc
Q 020653 153 DKLILEAISNLKEPNGSDRASIASYIEDQYWAPANLRKLLATKLKFLSANGTLIKAKH 210 (323)
Q Consensus 153 ~~MI~EAI~aLker~GSS~~AI~kyIe~~y~vp~nf~~lL~~aLKrlVasGkLvkvKg 210 (323)
.++|+.+|..|.+.......-|++ +..++ ++-++..|-+|-.+|.|.++.+
T Consensus 14 ~~~v~~~i~~L~~~~~~Ta~~IAk----kLg~s---K~~vNr~LY~L~kkG~V~~~~~ 64 (75)
T 1sfu_A 14 FSLVKKEVLSLNTNDYTTAISLSN----RLKIN---KKKINQQLYKLQKEDTVKMVPS 64 (75)
T ss_dssp HHHHHHHHHTSCTTCEECHHHHHH----HTTCC---HHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHHHHhCCCCcchHHHHHHH----HHCCC---HHHHHHHHHHHHHCCCEecCCC
Confidence 689999999999887766555554 55555 4568999999999999987754
No 82
>2kpm_A Uncharacterized protein; methods development, structural genomics, PSI-2, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=51.19 E-value=25 Score=28.43 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=31.7
Q ss_pred CChHHHHHHHHHhCCCCCC-CCHHHHHHHHHhhCC--Cchh
Q 020653 150 ARLDKLILEAISNLKEPNG-SDRASIASYIEDQYW--APAN 187 (323)
Q Consensus 150 P~Y~~MI~EAI~aLker~G-SS~~AI~kyIe~~y~--vp~n 187 (323)
....++|.+||..+.+.+| .+..+|-.||..+|+ .|-|
T Consensus 20 ~~l~~lL~~Ai~~~~dddGWa~Lg~vG~~L~k~~PdFDpRn 60 (105)
T 2kpm_A 20 AFPRKFVLAALEQSSDDAGWANLGNFGNYLNKLQPDFDSRL 60 (105)
T ss_dssp CCCHHHHHHHHHHTBCTTSCEEHHHHHHHHHHHCTTCCGGG
T ss_pred HHHHHHHHHHHHHhcCCcCcEeHHHHHHHHHHhCcCCCccc
Confidence 3458999999999988777 799999999999987 3544
No 83
>3fbl_A Putative uncharacterized protein; AFV1, archaeal virus, extremophiles, lipothrixviridae, structural protein, DNA-binding protein; 1.95A {Acidianus filamentous virus 1}
Probab=49.76 E-value=13 Score=28.20 Aligned_cols=29 Identities=31% Similarity=0.517 Sum_probs=23.8
Q ss_pred HHHHHHHHhCCCCCCCCH---HHHHHHHHhhC
Q 020653 154 KLILEAISNLKEPNGSDR---ASIASYIEDQY 182 (323)
Q Consensus 154 ~MI~EAI~aLker~GSS~---~AI~kyIe~~y 182 (323)
+-|-.||++...|.|.|. +-|+.||..||
T Consensus 51 eyinnaisafssrtgisqetaqkiadfitsny 82 (82)
T 3fbl_A 51 EYINNAISAFSSRTGISQETAQKIADFITSNY 82 (82)
T ss_dssp HHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHhcCC
Confidence 445668999999999987 45889999887
No 84
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=48.65 E-value=39 Score=25.17 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHhhCCCchhHHHHHHHHHHhhhhcCceeecccccccCCC
Q 020653 168 GSDRASIASYIEDQYWAPANLRKLLATKLKFLSANGTLIKAKHKYRITPN 217 (323)
Q Consensus 168 GSS~~AI~kyIe~~y~vp~nf~~lL~~aLKrlVasGkLvkvKgsyKl~~~ 217 (323)
+.+...|+..+ .++ ...++.+|+.|.+.|.|....|.|.|.+.
T Consensus 43 ~~~~~eLa~~l----~is---~~tv~~~L~~L~~~Glv~~~~g~y~l~~~ 85 (96)
T 1y0u_A 43 GRSEEEIMQTL----SLS---KKQLDYHLKVLEAGFCIERVGERWVVTDA 85 (96)
T ss_dssp TCCHHHHHHHH----TCC---HHHHHHHHHHHHHTTSEEEETTEEEECTT
T ss_pred CCCHHHHHHHH----CcC---HHHHHHHHHHHHHCCCEEEECCEEEECCC
Confidence 35555554444 332 34689999999999999987788888764
No 85
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=48.42 E-value=24 Score=27.53 Aligned_cols=55 Identities=16% Similarity=0.209 Sum_probs=39.7
Q ss_pred hHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCCCchhHHHHHHHHHHhhhhcCceeeccccc-ccC
Q 020653 152 LDKLILEAISNLKEPNGSDRASIASYIEDQYWAPANLRKLLATKLKFLSANGTLIKAKHKY-RIT 215 (323)
Q Consensus 152 Y~~MI~EAI~aLker~GSS~~AI~kyIe~~y~vp~nf~~lL~~aLKrlVasGkLvkvKgsy-Kl~ 215 (323)
..+.|++++....++- +-.-|+ +.-.++ ++-|+..|++|-..|+|+.++.+| .|.
T Consensus 20 ~eekVLe~LkeaG~Pl--kageIa----e~~Gvd---KKeVdKaik~LKkEgkI~SPkRCyw~~~ 75 (80)
T 2lnb_A 20 LEQRILQVLTEAGSPV--KLAQLV----KECQAP---KRELNQVLYRMKKELKVSLTSPATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHHTSCE--EHHHHH----HHHTSC---HHHHHHHHHHHHHTTSEEEEETTEEEES
T ss_pred HHHHHHHHHHHcCCCC--CHHHHH----HHHCCC---HHHHHHHHHHHHHcCCccCCCCceeeCC
Confidence 3678999998877663 333333 333455 668899999999999999999865 443
No 86
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=44.31 E-value=14 Score=28.17 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=23.0
Q ss_pred HHHHHHHHhhhhcCceee-cccccccC
Q 020653 190 KLLATKLKFLSANGTLIK-AKHKYRIT 215 (323)
Q Consensus 190 ~lL~~aLKrlVasGkLvk-vKgsyKl~ 215 (323)
..|..-|-++|..|+|+. ..|.|||+
T Consensus 48 ~eL~~fL~~~v~e~kL~~~~gG~YkL~ 74 (74)
T 1ldd_A 48 QQLEGYLNTLADEGRLKYIANGSYEIV 74 (74)
T ss_dssp HHHHHHHHHHHHTTSEECCTTTEEEEC
T ss_pred HHHHHHHHHHHhCCeEEEeCCCEEeCC
Confidence 578999999999999997 58899984
No 87
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=40.72 E-value=60 Score=24.52 Aligned_cols=58 Identities=21% Similarity=0.342 Sum_probs=42.6
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHhhCCCchhHHHHHHHHHHhhhhcCceeecc---cccccCCC
Q 020653 153 DKLILEAISNLKEPNGSDRASIASYIEDQYWAPANLRKLLATKLKFLSANGTLIKAK---HKYRITPN 217 (323)
Q Consensus 153 ~~MI~EAI~aLker~GSS~~AI~kyIe~~y~vp~nf~~lL~~aLKrlVasGkLvkvK---gsyKl~~~ 217 (323)
+.-|++.|.......+.+..-|++-+. ++ ++-++.+|.+|...|.|..+. +.|.|.+.
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lg----vs---r~tV~~~L~~Le~~G~I~~~g~~~~~W~i~~~ 72 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLG----TP---KKEINRVLYSLAKKGKLQKEAGTPPLWKIAVS 72 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHT----CC---HHHHHHHHHHHHHTTSEEEESSSSCEEEEC--
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHC----cC---HHHHHHHHHHHHHCCCEEecCCCCCeeEEeCc
Confidence 455778888766666788888877665 44 467899999999999998763 46777553
No 88
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=40.12 E-value=67 Score=23.69 Aligned_cols=51 Identities=12% Similarity=0.227 Sum_probs=37.8
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHhhCCCchhHHHHHHHHHHhhhhcCceeecc
Q 020653 153 DKLILEAISNLKEPNGSDRASIASYIEDQYWAPANLRKLLATKLKFLSANGTLIKAK 209 (323)
Q Consensus 153 ~~MI~EAI~aLker~GSS~~AI~kyIe~~y~vp~nf~~lL~~aLKrlVasGkLvkvK 209 (323)
.-.|+..| .+.+|.+...|.+.|.+...+. ...++..|++|+..|-+.+..
T Consensus 10 q~~iL~~l---~~~~~~~~~el~~~la~~l~is---~~tvs~~l~~Le~~gli~r~~ 60 (99)
T 1tbx_A 10 EAIVLAYL---YDNEGIATYDLYKKVNAEFPMS---TATFYDAKKFLIQEGFVKERQ 60 (99)
T ss_dssp HHHHHHHH---TTCTTCBHHHHHHHHHTTSCCC---HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHH---HHcCCcCHHHHHHHHHHHcCCC---HHHHHHHHHHHHHCCCEEEEe
Confidence 33455555 4457889999988887777765 346788899999999998753
No 89
>1psm_A SPAM-H1; polymorphic antigen; NMR {Plasmodium falciparum} SCOP: j.18.1.1
Probab=37.49 E-value=0.72 Score=31.06 Aligned_cols=15 Identities=67% Similarity=0.689 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 020653 279 EAEVAIAEAEEAARE 293 (323)
Q Consensus 279 EAE~~~~~AeeA~~E 293 (323)
|||+++-+||+|.++
T Consensus 19 dAe~a~~~AEqAsKd 33 (38)
T 1psm_A 19 DAENASKEAEEAAKE 33 (38)
T ss_dssp TTTHHHHHTTTTTCT
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 90
>2kzv_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; NMR {Chromobacterium violaceum}
Probab=36.02 E-value=55 Score=25.61 Aligned_cols=38 Identities=21% Similarity=0.400 Sum_probs=31.8
Q ss_pred ChHHHHHHHHHhCCCCCC-CCHHHHHHHHHhhCC--CchhH
Q 020653 151 RLDKLILEAISNLKEPNG-SDRASIASYIEDQYW--APANL 188 (323)
Q Consensus 151 ~Y~~MI~EAI~aLker~G-SS~~AI~kyIe~~y~--vp~nf 188 (323)
...++|.+||..+.+.+| .+..+|-.||..+|+ .|-|+
T Consensus 8 ~l~~ll~~Ai~~~~dedGWa~Lg~vG~~i~k~~PdFD~RnY 48 (92)
T 2kzv_A 8 PLQDMFTSAIEAVARDSGWAELSAVGSYLAKNDPSFDPRNW 48 (92)
T ss_dssp SHHHHHHHHHHHHTTTTSSCBHHHHHHHHHHHCTTCCTTTT
T ss_pred HHHHHHHHHHHHhcCCCCcEeHHHHHHHHHHhCcCCCcccc
Confidence 568899999999988776 799999999999987 35453
No 91
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=32.33 E-value=97 Score=22.78 Aligned_cols=40 Identities=15% Similarity=0.250 Sum_probs=29.0
Q ss_pred hCCCCCCCCHHHHHHHHHhhCCCchhHHHHHHHHHHhhhhcCceeecc
Q 020653 162 NLKEPNGSDRASIASYIEDQYWAPANLRKLLATKLKFLSANGTLIKAK 209 (323)
Q Consensus 162 aLker~GSS~~AI~kyIe~~y~vp~nf~~lL~~aLKrlVasGkLvkvK 209 (323)
.|.+ ++.+...|+..+ .++ ...++.+|+.|.+.|-+...+
T Consensus 31 ~L~~-~~~~~~ela~~l----~is---~~tvs~~L~~L~~~Glv~~~~ 70 (98)
T 3jth_A 31 MLHN-QELSVGELCAKL----QLS---QSALSQHLAWLRRDGLVTTRK 70 (98)
T ss_dssp HTTT-SCEEHHHHHHHH----TCC---HHHHHHHHHHHHHTTSEEEEC
T ss_pred HHhc-CCCCHHHHHHHH----CcC---HHHHHHHHHHHHHCCCeEEEE
Confidence 3444 567777777776 333 346899999999999998664
No 92
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=31.50 E-value=1.1e+02 Score=21.91 Aligned_cols=52 Identities=15% Similarity=0.115 Sum_probs=39.2
Q ss_pred hHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCCCchhHHHHHHHHHHhhhhcCceeecc
Q 020653 152 LDKLILEAISNLKEPNGSDRASIASYIEDQYWAPANLRKLLATKLKFLSANGTLIKAK 209 (323)
Q Consensus 152 Y~~MI~EAI~aLker~GSS~~AI~kyIe~~y~vp~nf~~lL~~aLKrlVasGkLvkvK 209 (323)
....|++.|.. ..+.+...|...+.....+. ..-+...|++|++.|-|.+.+
T Consensus 10 ~e~~vL~~L~~---~~~~t~~ei~~~l~~~~~~s---~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 10 AELEVMKVIWK---HSSINTNEVIKELSKTSTWS---PKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp HHHHHHHHHHT---SSSEEHHHHHHHHHHHSCCC---HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc---CCCCCHHHHHHHHhhcCCcc---HHHHHHHHHHHHHCCCeEEEe
Confidence 35567777766 35789999999998653332 346788899999999998765
No 93
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=30.95 E-value=40 Score=26.02 Aligned_cols=49 Identities=14% Similarity=0.215 Sum_probs=35.5
Q ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHhhCCCchhHHHHHHHHHHhhhhcCceeeccc
Q 020653 154 KLILEAISNLKEPNGSDRASIASYIEDQYWAPANLRKLLATKLKFLSANGTLIKAKH 210 (323)
Q Consensus 154 ~MI~EAI~aLker~GSS~~AI~kyIe~~y~vp~nf~~lL~~aLKrlVasGkLvkvKg 210 (323)
.+...-|.-|+ ++|.|...|++- ..++ +.-++.+|.+|...|.|++..+
T Consensus 17 ~~~~~IL~lL~-~~g~sa~eLAk~----LgiS---k~aVr~~L~~Le~eG~I~~~~~ 65 (82)
T 1oyi_A 17 EIVCEAIKTIG-IEGATAAQLTRQ----LNME---KREVNKALYDLQRSAMVYSSDD 65 (82)
T ss_dssp HHHHHHHHHHS-SSTEEHHHHHHH----SSSC---HHHHHHHHHHHHHHTSSEECSS
T ss_pred HHHHHHHHHHH-HcCCCHHHHHHH----HCcC---HHHHHHHHHHHHHCCCEEeCCC
Confidence 45555666677 577776666654 4454 4678999999999999998765
No 94
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=30.20 E-value=89 Score=23.40 Aligned_cols=21 Identities=24% Similarity=0.164 Sum_probs=18.1
Q ss_pred HHHHHHHhhhhcCceeecccc
Q 020653 191 LLATKLKFLSANGTLIKAKHK 211 (323)
Q Consensus 191 lL~~aLKrlVasGkLvkvKgs 211 (323)
-+...|+.|..+|.|.++.|.
T Consensus 40 TVrr~L~~Le~kG~I~R~~gg 60 (77)
T 2jt1_A 40 QVRLYLEQLHDVGVLEKVNAG 60 (77)
T ss_dssp HHHHHHHHHHHTTSEEEESCS
T ss_pred HHHHHHHHHHHCCcEEecCCC
Confidence 489999999999999988553
No 95
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=29.53 E-value=68 Score=22.86 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=37.3
Q ss_pred hHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCCCchhHHHHHHHHHHhhhhcCceeecc-cccccC
Q 020653 152 LDKLILEAISNLKEPNGSDRASIASYIEDQYWAPANLRKLLATKLKFLSANGTLIKAK-HKYRIT 215 (323)
Q Consensus 152 Y~~MI~EAI~aLker~GSS~~AI~kyIe~~y~vp~nf~~lL~~aLKrlVasGkLvkvK-gsyKl~ 215 (323)
...-|++.|.. +....|...|++. ..++ +..+...|+.|.+.|.|+..+ |.|.|.
T Consensus 11 ~~~~IL~~L~~--~~~~~s~~eLA~~----lgls---r~tv~~~l~~L~~~G~I~~~~~G~y~lg 66 (67)
T 2heo_A 11 LEQKILQVLSD--DGGPVAIFQLVKK----CQVP---KKTLNQVLYRLKKEDRVSSPSPKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHH--HCSCEEHHHHHHH----HCSC---HHHHHHHHHHHHHTTSEEEEETTEEEEC
T ss_pred HHHHHHHHHHH--cCCCcCHHHHHHH----HCcC---HHHHHHHHHHHHHCCcEecCCCceEeeC
Confidence 35567777764 2234676665554 4555 567888899999999988754 567763
No 96
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=27.74 E-value=2e+02 Score=21.89 Aligned_cols=53 Identities=17% Similarity=0.151 Sum_probs=39.4
Q ss_pred CChHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCCCchhHHHHHHHHHHhhhhcCceeeccc
Q 020653 150 ARLDKLILEAISNLKEPNGSDRASIASYIEDQYWAPANLRKLLATKLKFLSANGTLIKAKH 210 (323)
Q Consensus 150 P~Y~~MI~EAI~aLker~GSS~~AI~kyIe~~y~vp~nf~~lL~~aLKrlVasGkLvkvKg 210 (323)
....-||+..|....+ .|.+...|++-+ .++ ..-++..|++|...|-|..+++
T Consensus 19 t~~q~~Vl~~I~~~g~-~gi~qkeLa~~~----~l~---~~tvt~iLk~LE~kglIkr~~~ 71 (91)
T 2dk5_A 19 DNQEKLVYQIIEDAGN-KGIWSRDVRYKS----NLP---LTEINKILKNLESKKLIKAVKS 71 (91)
T ss_dssp CSSHHHHHHHHHHHCT-TCEEHHHHHHHT----TCC---HHHHHHHHHHHHHTTSEEEECC
T ss_pred CHHHHHHHHHHHHcCC-CCcCHHHHHHHH----CCC---HHHHHHHHHHHHHCCCEEEecC
Confidence 4468899999997554 488888777654 333 3468889999999999886654
No 97
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=25.58 E-value=77 Score=22.93 Aligned_cols=39 Identities=8% Similarity=0.120 Sum_probs=28.2
Q ss_pred CCCCCCCHHHHHHHHHhhCCCchhHHHHHHHHHHhhhhcCceeecc
Q 020653 164 KEPNGSDRASIASYIEDQYWAPANLRKLLATKLKFLSANGTLIKAK 209 (323)
Q Consensus 164 ker~GSS~~AI~kyIe~~y~vp~nf~~lL~~aLKrlVasGkLvkvK 209 (323)
.+..+.+...|.+.+ .++ ...++.+|+.|...|-+...+
T Consensus 34 ~~~~~~s~~ela~~l----~is---~~tvs~~l~~L~~~glv~~~~ 72 (99)
T 3cuo_A 34 SGSPGTSAGELTRIT----GLS---ASATSQHLARMRDEGLIDSQR 72 (99)
T ss_dssp TTCCSEEHHHHHHHH----CCC---HHHHHHHHHHHHHTTSEEEEE
T ss_pred HhCCCcCHHHHHHHH----CcC---HHHHHHHHHHHHHCCCEEEEe
Confidence 445567777777666 233 446889999999999998764
No 98
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=25.22 E-value=90 Score=24.20 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=37.1
Q ss_pred HHHHHHHHhC-CCCCCCCHHHHHHHHHhhCCCchhHHHHHHHHHHhhhhcCceeeccccccc
Q 020653 154 KLILEAISNL-KEPNGSDRASIASYIEDQYWAPANLRKLLATKLKFLSANGTLIKAKHKYRI 214 (323)
Q Consensus 154 ~MI~EAI~aL-ker~GSS~~AI~kyIe~~y~vp~nf~~lL~~aLKrlVasGkLvkvKgsyKl 214 (323)
.-++.+|..+ .+..+.+...|++.+. ++ +..++..|++|...|-|.+..+.|.|
T Consensus 16 ~~~L~~l~~l~~~~~~~s~~ela~~l~----is---~~tv~~~l~~Le~~Gli~r~~~~~~L 70 (139)
T 2x4h_A 16 FSYLLTIKRYNDSGEGAKINRIAKDLK----IA---PSSVFEEVSHLEEKGLVKKKEDGVWI 70 (139)
T ss_dssp HHHHHHHHHHHTTTSCBCHHHHHHHHT----CC---HHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHhC----CC---hHHHHHHHHHHHHCCCEEecCCeEEE
Confidence 3455666655 3456778888887663 33 44678889999999998876544444
No 99
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=24.09 E-value=1e+02 Score=24.07 Aligned_cols=60 Identities=17% Similarity=0.156 Sum_probs=44.6
Q ss_pred hHHHHHHHHHhCC-------CCCCCCHHHHHHHHHhhCCCchhHHHHHHHHHHhhhhcCceeecccccccCC
Q 020653 152 LDKLILEAISNLK-------EPNGSDRASIASYIEDQYWAPANLRKLLATKLKFLSANGTLIKAKHKYRITP 216 (323)
Q Consensus 152 Y~~MI~EAI~aLk-------er~GSS~~AI~kyIe~~y~vp~nf~~lL~~aLKrlVasGkLvkvKgsyKl~~ 216 (323)
|..+.-+.+..|. ++-|.++.-+......++ + .+++..-|..+++.|.|+...+-..++.
T Consensus 64 ~~~l~~~l~~~L~~yH~~~P~~~G~~keeLr~~~~~~~--~---~~~~~~ll~~l~~~g~l~~~~~~v~Lp~ 130 (135)
T 2v9v_A 64 YQAWWQAVTRALEEFHSRYPLRPGLAREELRSRYFSRL--P---ARVYQALLEEWSREGRLQLAANTVALAG 130 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSSCEEHHHHHHHHCTTS--C---HHHHHHHHHHHHHTTSEEECSSEEEETT
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCCCHHHHHHHhcccC--C---HHHHHHHHHHHHHCCCEEecCCEEECCC
Confidence 5666666666665 799999999988774322 3 3455666899999999999988888754
No 100
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=23.70 E-value=40 Score=24.30 Aligned_cols=39 Identities=8% Similarity=0.088 Sum_probs=27.8
Q ss_pred HhCCCCCCCCHHHHHHHHHhhC---CCchhHHHHHHHHHHhh
Q 020653 161 SNLKEPNGSDRASIASYIEDQY---WAPANLRKLLATKLKFL 199 (323)
Q Consensus 161 ~aLker~GSS~~AI~kyIe~~y---~vp~nf~~lL~~aLKrl 199 (323)
..+-+.-|.|+.+|..+|..+- .+.+..+..|...++.+
T Consensus 4 ~diA~~aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~l 45 (65)
T 1uxc_A 4 DEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREH 45 (65)
T ss_dssp HHHHHHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHh
Confidence 3344566999999999999876 67666666666655543
No 101
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=22.06 E-value=1.2e+02 Score=26.61 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=37.4
Q ss_pred HHHHHHhCCCCCCCCHHHHHHHHHhhCCCchhHHHHHHHHHHhhhhcCceeec-ccccccCCC
Q 020653 156 ILEAISNLKEPNGSDRASIASYIEDQYWAPANLRKLLATKLKFLSANGTLIKA-KHKYRITPN 217 (323)
Q Consensus 156 I~EAI~aLker~GSS~~AI~kyIe~~y~vp~nf~~lL~~aLKrlVasGkLvkv-KgsyKl~~~ 217 (323)
|+++|.. .+.+.+...|...+ .++ +.-+...|+.|++.|-|.+. .+.|+|.+.
T Consensus 13 iL~~l~~--~~~~~~~~ela~~~----gl~---~stv~r~l~~L~~~G~v~~~~~~~Y~lg~~ 66 (249)
T 1mkm_A 13 ILDFIVK--NPGDVSVSEIAEKF----NMS---VSNAYKYMVVLEEKGFVLRKKDKRYVPGYK 66 (249)
T ss_dssp HHHHHHH--CSSCBCHHHHHHHT----TCC---HHHHHHHHHHHHHTTSEEECTTSCEEECTH
T ss_pred HHHHHHh--CCCCCCHHHHHHHH----CcC---HHHHHHHHHHHHHCCcEEECCCCcEEECHH
Confidence 5666654 23467877766544 444 44677789999999999997 568988663
No 102
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=20.91 E-value=1.4e+02 Score=22.38 Aligned_cols=18 Identities=17% Similarity=0.390 Sum_probs=16.3
Q ss_pred HHHHHHHhhhhcCceeec
Q 020653 191 LLATKLKFLSANGTLIKA 208 (323)
Q Consensus 191 lL~~aLKrlVasGkLvkv 208 (323)
.++.-|..|...|.|.++
T Consensus 32 TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 32 MINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHCCCEEEe
Confidence 578889999999999998
No 103
>2og0_A Excisionase; protein-DNA complex, DNA architectural protein, 'winged'HELI protein, phage excision; 1.90A {Enterobacteria phage lambda} SCOP: a.6.1.7 PDB: 1lx8_A 1rh6_A 2ief_A
Probab=20.48 E-value=66 Score=22.70 Aligned_cols=26 Identities=8% Similarity=0.203 Sum_probs=21.0
Q ss_pred HHHHHhhhhcCce----eecccccccCCCC
Q 020653 193 ATKLKFLSANGTL----IKAKHKYRITPNT 218 (323)
Q Consensus 193 ~~aLKrlVasGkL----vkvKgsyKl~~~~ 218 (323)
...|.+.+.+|+| +|+.++|++.++.
T Consensus 18 ~~Tl~r~ar~G~I~Pp~~KvGr~wrv~~~a 47 (52)
T 2og0_A 18 LETVRRWVRESRIFPPPVKDGREYLFHESA 47 (52)
T ss_dssp HHHHHHHHHTTCEESCCEEETTEEEEETTC
T ss_pred HHHHHHHHHCCCCCCcccccCCEEEEcccc
Confidence 4567888899999 8888999987654
No 104
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=20.41 E-value=1.8e+02 Score=20.69 Aligned_cols=54 Identities=11% Similarity=0.047 Sum_probs=39.1
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHhhCC-CchhHHHHHHHHHHhhhhcCceeeccc
Q 020653 153 DKLILEAISNLKEPNGSDRASIASYIEDQYW-APANLRKLLATKLKFLSANGTLIKAKH 210 (323)
Q Consensus 153 ~~MI~EAI~aLker~GSS~~AI~kyIe~~y~-vp~nf~~lL~~aLKrlVasGkLvkvKg 210 (323)
...|++.|..-. ....|...|...+.+++. ++ ..-+...|+.|++.|.|.++.+
T Consensus 19 r~~IL~~l~~~~-~~~~s~~el~~~l~~~~~~is---~~TVyR~L~~L~~~Glv~~~~~ 73 (83)
T 2fu4_A 19 RLKILEVLQEPD-NHHVSAEDLYKRLIDMGEEIG---LATVYRVLNQFDDAGIVTRHNF 73 (83)
T ss_dssp HHHHHHHHTSGG-GSSBCHHHHHHHHHHTTCCCC---HHHHHHHHHHHHHHTSEEEEEC
T ss_pred HHHHHHHHHhCC-CCCCCHHHHHHHHHHhCCCCC---HhhHHHHHHHHHHCCCeEEEee
Confidence 456777775421 146899999999988764 43 3457888999999999988753
Done!