BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020654
(323 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AEC|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
Serine-(Thiol)-Lyase C
pdb|4AEC|B Chain B, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
Serine-(Thiol)-Lyase C
Length = 430
Score = 432 bits (1110), Expect = e-121, Method: Compositional matrix adjust.
Identities = 207/318 (65%), Positives = 249/318 (78%)
Query: 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDK 62
D I +V++LIG TPMVYLN++ GCVA IAAKLE+M+PC SVKDRI YSM+ DAE K
Sbjct: 109 DGLNIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQK 168
Query: 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122
G I+PGK+VL+E TSGNTGIGLAFIAASRGY+LI+ MP++ S+ERR++L+A GAE+ L D
Sbjct: 169 GFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTD 228
Query: 123 PAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXX 182
PA G G V+K EEIL TP+ Y+L QF+NPANP+IHYETTGPEIW+D+ GKVD F
Sbjct: 229 PAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGI 288
Query: 183 XXXXXXXXXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAML 242
RF+KEKNP +V G+EP+ES +L+GG+PG H IQGIGAG IP LD ++
Sbjct: 289 GTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIM 348
Query: 243 DEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGE 302
DEVI +SSEEAIET+K LALKEGL+VGISSG I+VAKRPENAGKLI V+FPS GE
Sbjct: 349 DEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENAGKLIAVVFPSFGE 408
Query: 303 RYLSTALFESIRHEVENM 320
RYLST LF+SIR EVE M
Sbjct: 409 RYLSTPLFQSIREEVEKM 426
>pdb|1Z7W|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From
Arabidopsis Thaliana
Length = 322
Score = 428 bits (1100), Expect = e-120, Method: Compositional matrix adjust.
Identities = 205/317 (64%), Positives = 250/317 (78%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
I KDVTELIG+TP+VYLNNV +GCV R+AAKLEMM+PCSSVKDRI +SMI DAE KGLI
Sbjct: 5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 64
Query: 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVG 126
PG++VLIE TSGNTG+GLAF AA++GYKLII MP++ S ERRIIL A G E+ L DPA G
Sbjct: 65 PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 124
Query: 127 FEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXXX 186
+G + K EEIL +TPNGY+L QFENPANP+IHYETTGPEIW +GGK+D F
Sbjct: 125 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 184
Query: 187 XXXXXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVI 246
++LKE+N N+K+YG+EP ESA+L+GG+PG H IQGIGAG IP VL+V ++DEV+
Sbjct: 185 TITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVV 244
Query: 247 TVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLS 306
VSS+E+I+ ++ LALKEGLLVGISSG I++A+RPENAGKL V IFPS GERYLS
Sbjct: 245 QVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFVAIFPSFGERYLS 304
Query: 307 TALFESIRHEVENMPID 323
T LF++ R E E M +
Sbjct: 305 TVLFDATRKEAEAMTFE 321
>pdb|2ISQ|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From
Arabidopsis Thaliana In Complex With C-Terminal Peptide
From Arabidopsis Serine Acetyltransferase
Length = 320
Score = 428 bits (1100), Expect = e-120, Method: Compositional matrix adjust.
Identities = 205/317 (64%), Positives = 250/317 (78%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
I KDVTELIG+TP+VYLNNV +GCV R+AAKLEMM+PCSSVKDRI +SMI DAE KGLI
Sbjct: 3 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 62
Query: 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVG 126
PG++VLIE TSGNTG+GLAF AA++GYKLII MP++ S ERRIIL A G E+ L DPA G
Sbjct: 63 PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 122
Query: 127 FEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXXX 186
+G + K EEIL +TPNGY+L QFENPANP+IHYETTGPEIW +GGK+D F
Sbjct: 123 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 182
Query: 187 XXXXXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVI 246
++LKE+N N+K+YG+EP ESA+L+GG+PG H IQGIGAG IP VL+V ++DEV+
Sbjct: 183 TITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVV 242
Query: 247 TVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLS 306
VSS+E+I+ ++ LALKEGLLVGISSG I++A+RPENAGKL V IFPS GERYLS
Sbjct: 243 QVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFVAIFPSFGERYLS 302
Query: 307 TALFESIRHEVENMPID 323
T LF++ R E E M +
Sbjct: 303 TVLFDATRKEAEAMTFE 319
>pdb|1Z7Y|A Chain A, Crystal Structure Of The Arabidopsis Thaliana
O-Acetylserine Sulfhydrylase K46a Mutant
Length = 322
Score = 426 bits (1095), Expect = e-120, Method: Compositional matrix adjust.
Identities = 204/317 (64%), Positives = 249/317 (78%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
I KDVTELIG+TP+VYLNNV +GCV R+AAKLEMM+PCSSV DRI +SMI DAE KGLI
Sbjct: 5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVADRIGFSMISDAEKKGLIK 64
Query: 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVG 126
PG++VLIE TSGNTG+GLAF AA++GYKLII MP++ S ERRIIL A G E+ L DPA G
Sbjct: 65 PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 124
Query: 127 FEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXXX 186
+G + K EEIL +TPNGY+L QFENPANP+IHYETTGPEIW +GGK+D F
Sbjct: 125 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 184
Query: 187 XXXXXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVI 246
++LKE+N N+K+YG+EP ESA+L+GG+PG H IQGIGAG IP VL+V ++DEV+
Sbjct: 185 TITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVV 244
Query: 247 TVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLS 306
VSS+E+I+ ++ LALKEGLLVGISSG I++A+RPENAGKL V IFPS GERYLS
Sbjct: 245 QVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFVAIFPSFGERYLS 304
Query: 307 TALFESIRHEVENMPID 323
T LF++ R E E M +
Sbjct: 305 TVLFDATRKEAEAMTFE 321
>pdb|3VBE|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
Length = 344
Score = 381 bits (979), Expect = e-106, Method: Compositional matrix adjust.
Identities = 179/316 (56%), Positives = 232/316 (73%)
Query: 5 CEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGL 64
IKK V++LIG TP+VYLN V +GC A +A K EMMQP +S+KDR AY+MI DAE+K L
Sbjct: 23 TNIKKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIKDRPAYAMITDAEEKNL 82
Query: 65 ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124
ITPGKT LIE TSGN GI +AF+AA +GYK+++ MPS S+ERR+ +RA GAE+ L DPA
Sbjct: 83 ITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142
Query: 125 VGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXX 184
G G VKK E+L TPN ++L QF NPAN ++H+ETTGPEIW D+ G+VD F
Sbjct: 143 KGMGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIGS 202
Query: 185 XXXXXXXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDE 244
++LK KNPN+K+YG+EPSES VLNGG+PG H I G G G P +LD+ ++++
Sbjct: 203 GGTVSGVGQYLKSKNPNVKIYGVEPSESNVLNGGKPGPHHITGNGVGFKPDILDLDVMEK 262
Query: 245 VITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERY 304
V+ VSSE+A+ +++LALKEGL+VGISSG +R+A+ PEN GKLIV + PS GERY
Sbjct: 263 VLEVSSEDAVNMARVLALKEGLMVGISSGANTVAALRLAQLPENKGKLIVTVHPSFGERY 322
Query: 305 LSTALFESIRHEVENM 320
LS+ LF+ +R E ENM
Sbjct: 323 LSSVLFQELRQEAENM 338
>pdb|3VC3|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|E Chain E, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|F Chain F, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
Length = 344
Score = 379 bits (974), Expect = e-105, Method: Compositional matrix adjust.
Identities = 178/316 (56%), Positives = 231/316 (73%)
Query: 5 CEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGL 64
IKK V++LIG TP+VYLN V +GC A +A K EMMQP +S+ DR AY+MI DAE+K L
Sbjct: 23 TNIKKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIADRPAYAMITDAEEKNL 82
Query: 65 ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124
ITPGKT LIE TSGN GI +AF+AA +GYK+++ MPS S+ERR+ +RA GAE+ L DPA
Sbjct: 83 ITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142
Query: 125 VGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXX 184
G G VKK E+L TPN ++L QF NPAN ++H+ETTGPEIW D+ G+VD F
Sbjct: 143 KGMGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIGS 202
Query: 185 XXXXXXXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDE 244
++LK KNPN+K+YG+EPSES VLNGG+PG H I G G G P +LD+ ++++
Sbjct: 203 GGTVSGVGQYLKSKNPNVKIYGVEPSESNVLNGGKPGPHHITGNGVGFKPDILDLDVMEK 262
Query: 245 VITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERY 304
V+ VSSE+A+ +++LALKEGL+VGISSG +R+A+ PEN GKLIV + PS GERY
Sbjct: 263 VLEVSSEDAVNMARVLALKEGLMVGISSGANTVAALRLAQLPENKGKLIVTVHPSFGERY 322
Query: 305 LSTALFESIRHEVENM 320
LS+ LF+ +R E ENM
Sbjct: 323 LSSVLFQELRQEAENM 338
>pdb|2Q3D|A Chain A, 2.2 A Resolution Crystal Structure Of O-acetylserine
Sulfhydrylase (oass) From Mycobacterium Tuberculosis In
Complex With The Reaction Intermediate
Alpha-aminoacrylate
Length = 313
Score = 311 bits (797), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 155/307 (50%), Positives = 204/307 (66%), Gaps = 1/307 (0%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
I +D+T+LIG TP+V L V DG VA I AKLE P +SVKDRI +M++ AE GLI
Sbjct: 6 IAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLIK 65
Query: 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVG 126
P T+++E TSGNTGI LA + A+RGY+ ++ MP T S+ERR++LRA GAE+ L A G
Sbjct: 66 P-DTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGADG 124
Query: 127 FEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXXX 186
G + K EE+ ++ QFENPANP IH TT E+W D+ GKVD
Sbjct: 125 MSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTGG 184
Query: 187 XXXXXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVI 246
+ +KE+ P+ + +EP+ S VL+GGQ G H IQGIGAG +PPVLD ++DE+I
Sbjct: 185 TITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDQDLVDEII 244
Query: 247 TVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLS 306
TV +E+A+ ++ LA +EGLLVGISSG ++VA+RPENAGKLIVV+ P GERYLS
Sbjct: 245 TVGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPENAGKLIVVVLPDFGERYLS 304
Query: 307 TALFESI 313
T LF +
Sbjct: 305 TPLFADV 311
>pdb|2Q3B|A Chain A, 1.8 A Resolution Crystal Structure Of O-Acetylserine
Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
Tuberculosis
pdb|2Q3C|A Chain A, 2.1 A Resolution Crystal Structure Of O-Acetylserine
Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
Tuberculosis In Complex With The Inhibitory Peptide Dfsi
Length = 313
Score = 309 bits (791), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 154/307 (50%), Positives = 203/307 (66%), Gaps = 1/307 (0%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
I +D+T+LIG TP+V L V DG VA I AKLE P +SV DRI +M++ AE GLI
Sbjct: 6 IAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVXDRIGVAMLQAAEQAGLIK 65
Query: 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVG 126
P T+++E TSGNTGI LA + A+RGY+ ++ MP T S+ERR++LRA GAE+ L A G
Sbjct: 66 P-DTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGADG 124
Query: 127 FEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXXX 186
G + K EE+ ++ QFENPANP IH TT E+W D+ GKVD
Sbjct: 125 MSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTGG 184
Query: 187 XXXXXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVI 246
+ +KE+ P+ + +EP+ S VL+GGQ G H IQGIGAG +PPVLD ++DE+I
Sbjct: 185 TITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDQDLVDEII 244
Query: 247 TVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLS 306
TV +E+A+ ++ LA +EGLLVGISSG ++VA+RPENAGKLIVV+ P GERYLS
Sbjct: 245 TVGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPENAGKLIVVVLPDFGERYLS 304
Query: 307 TALFESI 313
T LF +
Sbjct: 305 TPLFADV 311
>pdb|3RR2|A Chain A, Structure Of A Cysteine Synthase (O-Acetylserine
Sulfhydrylase (Oass)) From Mycobacterium Marinum Atcc
Baa-535 M
Length = 314
Score = 306 bits (785), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 154/307 (50%), Positives = 203/307 (66%), Gaps = 1/307 (0%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
I +++T+LIG TP+V L V DG A + AKLE P S+KDRI +MI AE GLI
Sbjct: 7 IAENITQLIGGTPLVRLRRVTDGAAADVVAKLESFNPAGSIKDRIGVAMIDAAEKAGLIK 66
Query: 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVG 126
P T+++E TSGNTGI LA ++A+RGYK ++ MP T SIERR++LRA GAE+ L A G
Sbjct: 67 P-DTIILEPTSGNTGIALAMVSAARGYKCVLTMPDTMSIERRMLLRAYGAELVLTPGAEG 125
Query: 127 FEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXXX 186
G + K EE+ +I QFENPANP +H TT E+W D+ GKVD F
Sbjct: 126 MAGAIAKAEELAKTDDRYFIPQQFENPANPAVHAVTTAEEVWRDTDGKVDIFVSGVGTGG 185
Query: 187 XXXXXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVI 246
+ +K++ P+ + +EP+ S VL+GGQ G H IQGIGAG +PPVLD+A++DEVI
Sbjct: 186 TITGVAQVIKQRRPSAQFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDLALVDEVI 245
Query: 247 TVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLS 306
TV +++A+E ++ +A +EGLLVGISSG +A RPENAGKLIVV+ P GERYLS
Sbjct: 246 TVGNDDALELARRMATEEGLLVGISSGAAVWAARELAHRPENAGKLIVVVLPDFGERYLS 305
Query: 307 TALFESI 313
T LF +
Sbjct: 306 TVLFADL 312
>pdb|4I1Y|A Chain A, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|B Chain B, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|C Chain C, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|D Chain D, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
Length = 314
Score = 302 bits (774), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 152/307 (49%), Positives = 201/307 (65%), Gaps = 1/307 (0%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
I +++ +LIG TP+V L V DG A + AKLE P S+KDRI +MI AE GLI
Sbjct: 7 IAENIAQLIGGTPLVRLRRVTDGAAADVVAKLESFNPAGSIKDRIGVAMIDAAEKAGLIK 66
Query: 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVG 126
P T+++E TSGNTGI LA ++A+RGYK ++ MP T SIERR++LRA GAE+ L A G
Sbjct: 67 P-DTIILEPTSGNTGIALAMVSAARGYKCVLTMPDTMSIERRMLLRAYGAELVLTPGAEG 125
Query: 127 FEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXXX 186
G + K EE+ +I QFENPANP +H TT E+W D+ GKVD F
Sbjct: 126 MAGAIAKAEELAKTDDRYFIPQQFENPANPAVHAVTTAEEVWRDTDGKVDIFVSGVGTGG 185
Query: 187 XXXXXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVI 246
+ +K++ P+ + +EP+ S VL+GGQ G H IQGIGAG +PPVLD+A++DEVI
Sbjct: 186 TITGVAQVIKQRRPSAQFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDLALVDEVI 245
Query: 247 TVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLS 306
TV +++A+E ++ +A +EGLL GISSG +A RPENAGKLIVV+ P GERYLS
Sbjct: 246 TVGNDDALELARRMATEEGLLFGISSGAAVWAARELAHRPENAGKLIVVVLPDFGERYLS 305
Query: 307 TALFESI 313
T LF +
Sbjct: 306 TVLFADL 312
>pdb|4AIR|A Chain A, Leishmania Major Cysteine Synthase
pdb|4AIR|B Chain B, Leishmania Major Cysteine Synthase
Length = 354
Score = 276 bits (705), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 137/316 (43%), Positives = 197/316 (62%), Gaps = 1/316 (0%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
+ + + +LIG TP +YLN + + A++ K+E P +SVKDR+ +++ AE +G +
Sbjct: 32 VAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVKDRLGFAIYDKAEKEGKLI 90
Query: 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVG 126
PGK+V++E +SGNTG+ LA + A RGYK+II MP + S+ERR +LR GAEV L A+G
Sbjct: 91 PGKSVVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAALG 150
Query: 127 FEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXXX 186
+G V ++I+ PN + QF N IH ETTGPEIW + VD F
Sbjct: 151 MKGAVTMAKKIVTANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGVGTGG 210
Query: 187 XXXXXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVI 246
R LK+ + ++ +EP ES VL+GG+PG H IQGIG G +P VLD +++DEV
Sbjct: 211 TLTGVARALKKMGSHARIVAVEPMESPVLSGGKPGAHKIQGIGPGFVPDVLDRSLIDEVF 270
Query: 247 TVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLS 306
V+ ++AIET+ L +G+ G S G +++A+RPE GK IV I PS GERYLS
Sbjct: 271 CVAGDDAIETALKLTRSDGVFCGFSGGANVYAALKIAERPEMEGKTIVTIIPSFGERYLS 330
Query: 307 TALFESIRHEVENMPI 322
TAL+ S+R EV ++P+
Sbjct: 331 TALYRSVRDEVSSLPV 346
>pdb|3T4P|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani In Complex With Designed
Tetrapeptide
pdb|3TBH|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase In
Complex With Octapeptide Derived From Serine Acetyl
Transferase Of Leishmania Donovani
pdb|3SPX|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani
Length = 334
Score = 272 bits (695), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 133/316 (42%), Positives = 197/316 (62%), Gaps = 1/316 (0%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
+ + + +LIG TP +YLN + + A++ K+E P +SV DR+ +++ AE +G +
Sbjct: 11 VAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVXDRLGFAIYDKAEKEGKLI 69
Query: 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVG 126
PGK++++E +SGNTG+ LA + A RGYK+II MP + S+ERR +LR GAEV L A+G
Sbjct: 70 PGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAALG 129
Query: 127 FEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXXX 186
+G V ++I+ PN + QF N IH ETTGPEIW + VD F
Sbjct: 130 MKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGVGTGG 189
Query: 187 XXXXXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVI 246
R LK+ + ++ +EP+ES VL+GG+PG H IQGIG G +P VLD +++DEV+
Sbjct: 190 TLTGVARALKKMGSHARIVAVEPTESPVLSGGKPGPHKIQGIGPGFVPDVLDRSLIDEVL 249
Query: 247 TVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLS 306
V+ ++AIET+ L +G+ G S G +++A+RPE GK IV + PS GERYLS
Sbjct: 250 CVAGDDAIETALKLTRSDGVFCGFSGGANVYAALKIAERPEMEGKTIVTVIPSFGERYLS 309
Query: 307 TALFESIRHEVENMPI 322
T L+ S+R EV ++P+
Sbjct: 310 TTLYRSVRDEVSSLPV 325
>pdb|1OAS|A Chain A, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium
pdb|1OAS|B Chain B, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium
pdb|1FCJ|A Chain A, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|B Chain B, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|C Chain C, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|D Chain D, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
Length = 322
Score = 265 bits (677), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 148/323 (45%), Positives = 205/323 (63%), Gaps = 13/323 (4%)
Query: 5 CEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGL 64
+I +D + IGHTP+V LN + +G RI AK+E P SVK RI +MI DAE +G+
Sbjct: 1 SKIYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGV 57
Query: 65 ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124
+ PG L+E T+GNTGI LA++AA+RGYKL + MP T SIERR +L+ALGA + L + A
Sbjct: 58 LKPG-VELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGA 116
Query: 125 VGFEGFVKKGEEILNRTPNGYIL-GQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXX 183
G +G ++K EEI+ P Y+L QF NPANPEIH +TTGPEIW D+ G+VD F
Sbjct: 117 KGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVG 176
Query: 184 XXXXXXXXXRFLK--EKNPNIKVYGIEPSESAVLNGG------QPGKHLIQGIGAGVIPP 235
R++K + ++ +EP++S V+ +PG H IQGIGAG IP
Sbjct: 177 TGGTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPG 236
Query: 236 VLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVV 295
LD+ ++D+V+ +++EEAI T++ L +EG+L GISSG +++ + K IVV
Sbjct: 237 NLDLKLIDKVVGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVV 296
Query: 296 IFPSAGERYLSTALFESIRHEVE 318
I PS+GERYLSTALF + E E
Sbjct: 297 ILPSSGERYLSTALFADLFTEKE 319
>pdb|1D6S|A Chain A, Crystal Structure Of The K41a Mutant Of O-Acetylserine
Sulfhydrylase Complexed In External Aldimine Linkage
With Methionine
pdb|1D6S|B Chain B, Crystal Structure Of The K41a Mutant Of O-Acetylserine
Sulfhydrylase Complexed In External Aldimine Linkage
With Methionine
Length = 322
Score = 263 bits (672), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 147/323 (45%), Positives = 204/323 (63%), Gaps = 13/323 (4%)
Query: 5 CEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGL 64
+I +D + IGHTP+V LN + +G RI AK+E P SV RI +MI DAE +G+
Sbjct: 1 SKIYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVACRIGANMIWDAEKRGV 57
Query: 65 ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124
+ PG L+E T+GNTGI LA++AA+RGYKL + MP T SIERR +L+ALGA + L + A
Sbjct: 58 LKPG-VELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGA 116
Query: 125 VGFEGFVKKGEEILNRTPNGYIL-GQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXX 183
G +G ++K EEI+ P Y+L QF NPANPEIH +TTGPEIW D+ G+VD F
Sbjct: 117 KGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVG 176
Query: 184 XXXXXXXXXRFLK--EKNPNIKVYGIEPSESAVLNGG------QPGKHLIQGIGAGVIPP 235
R++K + ++ +EP++S V+ +PG H IQGIGAG IP
Sbjct: 177 TGGTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPG 236
Query: 236 VLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVV 295
LD+ ++D+V+ +++EEAI T++ L +EG+L GISSG +++ + K IVV
Sbjct: 237 NLDLKLIDKVVGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVV 296
Query: 296 IFPSAGERYLSTALFESIRHEVE 318
I PS+GERYLSTALF + E E
Sbjct: 297 ILPSSGERYLSTALFADLFTEKE 319
>pdb|2EGU|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrase From
Geobacillus Kaustophilus Hta426
Length = 308
Score = 262 bits (670), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 150/302 (49%), Positives = 199/302 (65%), Gaps = 5/302 (1%)
Query: 11 VTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKT 70
+TELIG TP V LN +VD A + KLE M P SSVKDRIA +MI+ AE G + PG T
Sbjct: 8 ITELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGKLKPGDT 67
Query: 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGF 130
+ +E TSGNTGIGLA +AA++GYK +++MP T S+ERR +LRA GAE+ L A G G
Sbjct: 68 I-VEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGAQGMRGA 126
Query: 131 VKKGEEILNRTPNGYIL-GQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXXXXXX 189
+ K EE++ +GY + QF+N ANPEIH TTG EI G ++DAF
Sbjct: 127 IAKAEELVRE--HGYFMPQQFKNEANPEIHRLTTGKEIVEQMGDQLDAFVAGVGTGGTIT 184
Query: 190 XXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVS 249
+ L+E PNIK+Y +EP++S VL+GG+PG H IQGIGAG +P +LD ++ D VITV+
Sbjct: 185 GAGKVLREAYPNIKIYAVEPADSPVLSGGKPGPHKIQGIGAGFVPDILDTSIYDGVITVT 244
Query: 250 SEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTAL 309
+EEA ++ A +EG+L GISSG ++VAK GK ++ I PS GERYLST L
Sbjct: 245 TEEAFAAARRAAREEGILGGISSGAAIHAALKVAKE-LGKGKKVLAIIPSNGERYLSTPL 303
Query: 310 FE 311
++
Sbjct: 304 YQ 305
>pdb|1VE1|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase
pdb|2ECO|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Methylvalerate
pdb|2ECQ|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 3-Hydroxylactate
pdb|2EFY|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Acetylbutyric Acid
pdb|2EFY|B Chain B, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Acetylbutyric Acid
Length = 304
Score = 241 bits (616), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 136/301 (45%), Positives = 189/301 (62%), Gaps = 11/301 (3%)
Query: 15 IGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGK-TVLI 73
IG TP+V L VV+ +A + KLE + P S+KDR A+ MIKDAE++G++ PG V++
Sbjct: 7 IGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSGQVIV 66
Query: 74 ELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA----VGFEG 129
E TSGNTGIGLA IAASRGY+LI+ MP+ S ER+ +L+A GAE+ L DP E
Sbjct: 67 EPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLAAREE 126
Query: 130 FVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXXXXXX 189
++ EE+ P+ QF+NPAN HYETTGPE++ G++DAF
Sbjct: 127 ALRLKEELGAFMPD-----QFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTIT 181
Query: 190 XXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVS 249
R+LKE+ P++KV +EP+ S VL+GG+ G+H QG+G G IP LD+++LD VI V
Sbjct: 182 GVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGMGPGFIPENLDLSLLDGVIQVW 241
Query: 250 SEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTAL 309
E+A ++ LA +EGL +G+SSG ++VA R GK + I P G +YLST L
Sbjct: 242 EEDAFPLARRLAREEGLFLGMSSGGIVWAALQVA-RELGPGKRVACISPDGGWKYLSTPL 300
Query: 310 F 310
+
Sbjct: 301 Y 301
>pdb|1Y7L|A Chain A, O-Acetylserine Sulfhydrylase Complex
pdb|3IQG|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mnwni
pdb|3IQH|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mnydi
pdb|3IQI|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mneni
Length = 316
Score = 237 bits (604), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 145/315 (46%), Positives = 191/315 (60%), Gaps = 11/315 (3%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
I D + IG+TP+V L + G + K+E P SV RI +M+ AE G +T
Sbjct: 3 IYADNSYSIGNTPLVRLKHF--GHNGNVVVKIEGRNPSYSVXCRIGANMVWQAEKDGTLT 60
Query: 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVG 126
GK + ++ TSGNTGI LA++AA+RGYK+ + MP T S+ER+ +L LG + L + A G
Sbjct: 61 KGKEI-VDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKG 119
Query: 127 FEGFVKKGEEILNRTPNGYI-LGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXX 185
+G + K EEI+ P+ Y+ L QFENPANP+IH ETTGPEIW D+ GKVD
Sbjct: 120 MKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTG 179
Query: 186 XXXXXXXRFLK-EKNPNIKVYGIEPSESAVLNGG------QPGKHLIQGIGAGVIPPVLD 238
R +K + I +EP ES V++ +PG H IQGIGAG IP LD
Sbjct: 180 GSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGPHKIQGIGAGFIPKNLD 239
Query: 239 VAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFP 298
++++D V TV S+ A+ T++ L +EG+L GISSG R+AK PE A KLIVVI P
Sbjct: 240 LSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAADRLAKLPEFADKLIVVILP 299
Query: 299 SAGERYLSTALFESI 313
SA ERYLSTALFE I
Sbjct: 300 SASERYLSTALFEGI 314
>pdb|3FCA|A Chain A, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid
Into Proteins As Biophysical Probe
pdb|3FCA|B Chain B, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid
Into Proteins As Biophysical Probe
Length = 291
Score = 229 bits (583), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 137/295 (46%), Positives = 180/295 (61%), Gaps = 10/295 (3%)
Query: 13 ELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVL 72
LIG TP+V L D +RI KLE P SVKDR A MI DAE +GL+ G +
Sbjct: 4 RLIGSTPIVRL----DSIDSRIXLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG---I 56
Query: 73 IELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVK 132
+E TSGN GI +A I A RG+++I+ MP T S+ERR +L+ LGAE+ L +G +G V+
Sbjct: 57 VEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVE 116
Query: 133 KGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXXXXXXXXX 192
K EI +R ++L QFENP N H TTGPEI ++DAF
Sbjct: 117 KALEI-SRETGAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVG 175
Query: 193 RFLKEKNPN-IKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSE 251
R LK N +K+ +EP++S VL+GGQPGKH IQGIGAG +P +LD +++DEVITV E
Sbjct: 176 RVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILDRSVIDEVITVEDE 235
Query: 252 EAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLS 306
EA E ++ LA KEGLLVGISSG ++VA++ + +V + P ERYLS
Sbjct: 236 EAYEMARYLAKKEGLLVGISSGANVAAALKVAQKLGPDAR-VVTVAPDHAERYLS 289
>pdb|1O58|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|B Chain B, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|C Chain C, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|D Chain D, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
Length = 303
Score = 228 bits (581), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 137/295 (46%), Positives = 180/295 (61%), Gaps = 10/295 (3%)
Query: 13 ELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVL 72
LIG TP+V L D +RI KLE P SVKDR A MI DAE +GL+ G +
Sbjct: 16 RLIGSTPIVRL----DSIDSRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG---I 68
Query: 73 IELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVK 132
+E TSGN GI +A I A RG+++I+ MP T S+ERR +L+ LGAE+ L +G +G V+
Sbjct: 69 VEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVE 128
Query: 133 KGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXXXXXXXXX 192
K EI +R ++L QFENP N H TTGPEI ++DAF
Sbjct: 129 KALEI-SRETGAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVG 187
Query: 193 RFLKEKNPN-IKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSE 251
R LK N +K+ +EP++S VL+GGQPGKH IQGIGAG +P +LD +++DEVITV E
Sbjct: 188 RVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILDRSVIDEVITVEDE 247
Query: 252 EAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLS 306
EA E ++ LA KEGLLVGISSG ++VA++ + +V + P ERYLS
Sbjct: 248 EAYEMARYLAKKEGLLVGISSGANVAAALKVAQKLGPDAR-VVTVAPDHAERYLS 301
>pdb|2BHS|A Chain A, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|B Chain B, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|C Chain C, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|D Chain D, Crystal Structure Of Cysteine Synthase B
Length = 303
Score = 204 bits (520), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 117/298 (39%), Positives = 167/298 (56%), Gaps = 11/298 (3%)
Query: 13 ELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVL 72
+ IG+TP+V L + + + KLE P SVKDR A SMI +AE +G I PG VL
Sbjct: 6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGD-VL 64
Query: 73 IELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVK 132
IE TSGNTGI LA IAA +GY++ ++MP S ERR +RA GAE+ L G EG
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARD 124
Query: 133 KGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXXXXXXXXX 192
E+ NR G +L QF NP NP HY TTGPEIW +GG++ F
Sbjct: 125 LALEMANRG-EGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVS 183
Query: 193 RFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEE 252
RF++E++ + + G++P E + + G I+ +P + + +++DEV+ + +
Sbjct: 184 RFMREQSKPVTIVGLQPEEGSSIPG-------IRRWPTEYLPGIFNASLVDEVLDIHQRD 236
Query: 253 AIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALF 310
A T + LA++EG+ G+SSG +RVAK N ++V I G+RYLST +F
Sbjct: 237 AENTMRELAVREGIFCGVSSGGAVAGALRVAK--ANPDAVVVAIICDRGDRYLSTGVF 292
>pdb|2BHT|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|B Chain B, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|C Chain C, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|D Chain D, Crystal Structure Of O-Acetylserine Sulfhydrylase B
Length = 303
Score = 202 bits (513), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 115/298 (38%), Positives = 166/298 (55%), Gaps = 11/298 (3%)
Query: 13 ELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVL 72
+ IG+TP+V L + + + KLE P SV DR A SMI +AE +G I PG VL
Sbjct: 6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVXDRAALSMIVEAEKRGRIKPGD-VL 64
Query: 73 IELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVK 132
IE TSGNTGI LA IAA +GY++ ++MP S ERR +RA GAE+ L G EG
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARD 124
Query: 133 KGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXXXXXXXXX 192
E+ NR G +L QF NP NP+ HY TTGPEIW +GG++ F
Sbjct: 125 LALEMANRG-EGKLLDQFNNPDNPKAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVS 183
Query: 193 RFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEE 252
F++E++ + + G++P E + + G I+ +P + + +++DEV+ + +
Sbjct: 184 EFMREQSKPVTIVGLQPEEGSSIPG-------IRRWPTEYLPGIFNASLVDEVLDIHQRD 236
Query: 253 AIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALF 310
A T + LA++EG+ G+SSG +RVAK N ++V I G+RYLST +F
Sbjct: 237 AENTMRELAVREGIFCGVSSGGAVAGALRVAK--ANPDAVVVAIICDRGDRYLSTGVF 292
>pdb|3BM5|A Chain A, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
Entamoeba Histolytica In Complex With Cysteine
pdb|3BM5|B Chain B, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
Entamoeba Histolytica In Complex With Cysteine
Length = 338
Score = 201 bits (510), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 178/310 (57%), Gaps = 7/310 (2%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCV----ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDK 62
I ++ E IG TP+V L+ V + RI KLE P SSVKDR+ ++++ A
Sbjct: 12 IYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNIVYQAIKD 71
Query: 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122
G + PG + IE TSGNTGI L A GY++ I MPST S+ER++I++A GAE+ L +
Sbjct: 72 GRLKPGMEI-IESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTE 130
Query: 123 PAVGFEGFVKKGEEILNRTPNGYILG-QFENPANPEIHYETTGPEIWNDSGGKVDAFXXX 181
G G +++ +++ P Y + QF NP N H+ T EIW D+ G+VD
Sbjct: 131 GKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHHYTAN-EIWEDTDGEVDIVVSA 189
Query: 182 XXXXXXXXXXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAM 241
LKEK IK+ +EP ESAVL G G H IQGIGAG IP +
Sbjct: 190 VGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGPHGIQGIGAGFIPDIYKKEF 249
Query: 242 LDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAG 301
+DE+I + +++A + ++ + +G++ G+SSG ++ A++PEN GK IV+I PS G
Sbjct: 250 VDEIIPIKTQDAWKMARAVVKYDGIMCGMSSGAAILAGLKEAEKPENEGKTIVIIVPSCG 309
Query: 302 ERYLSTALFE 311
ERYLST L++
Sbjct: 310 ERYLSTDLYK 319
>pdb|2PQM|A Chain A, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
pdb|2PQM|B Chain B, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
Length = 343
Score = 200 bits (509), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 178/310 (57%), Gaps = 7/310 (2%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCV----ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDK 62
I ++ E IG TP+V L+ V + RI KLE P SSVKDR+ ++++ A
Sbjct: 13 IYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNIVYQAIKD 72
Query: 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122
G + PG + IE TSGNTGI L A GY++ I MPST S+ER++I++A GAE+ L +
Sbjct: 73 GRLKPGMEI-IESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTE 131
Query: 123 PAVGFEGFVKKGEEILNRTPNGYILG-QFENPANPEIHYETTGPEIWNDSGGKVDAFXXX 181
G G +++ +++ P Y + QF NP N H+ T EIW D+ G+VD
Sbjct: 132 GKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHHYTAN-EIWEDTDGEVDIVVSA 190
Query: 182 XXXXXXXXXXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAM 241
LKEK IK+ +EP ESAVL G G H IQGIGAG IP +
Sbjct: 191 VGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGPHGIQGIGAGFIPDIYKKEF 250
Query: 242 LDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAG 301
+DE+I + +++A + ++ + +G++ G+SSG ++ A++PEN GK IV+I PS G
Sbjct: 251 VDEIIPIKTQDAWKMARAVVKYDGIMCGMSSGAAILAGLKEAEKPENEGKTIVIIVPSCG 310
Query: 302 ERYLSTALFE 311
ERYLST L++
Sbjct: 311 ERYLSTDLYK 320
>pdb|2V03|A Chain A, High Resolution Structure And Catalysis Of An O-
Acetylserine Sulfhydrylase
Length = 303
Score = 200 bits (509), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 115/298 (38%), Positives = 165/298 (55%), Gaps = 11/298 (3%)
Query: 13 ELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVL 72
+ IG+TP+V L + + + KLE P SV DR A SMI +AE +G I PG VL
Sbjct: 6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVXDRAALSMIVEAEKRGEIKPGD-VL 64
Query: 73 IELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVK 132
IE TSGNTGI LA IAA +GY++ ++MP S ERR +RA GAE+ L G EG
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARD 124
Query: 133 KGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXXXXXXXXX 192
E+ NR G +L QF NP NP HY TTGPEIW +GG++ F
Sbjct: 125 LALEMANRG-EGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVS 183
Query: 193 RFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEE 252
RF++E++ + + G++P E + + G I+ +P + + +++DEV+ + +
Sbjct: 184 RFMREQSKPVTIVGLQPEEGSSIPG-------IRRWPTEYLPGIFNASLVDEVLDIHQRD 236
Query: 253 AIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALF 310
A T + LA++EG+ G+SSG +RVA N ++V I G+RYLST +F
Sbjct: 237 AENTMRELAVREGIFCGVSSGGAVAGALRVAA--ANPDAVVVAIICDRGDRYLSTGVF 292
>pdb|2JC3|A Chain A, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|B Chain B, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|C Chain C, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|D Chain D, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|E Chain E, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|F Chain F, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|G Chain G, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|H Chain H, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
Length = 303
Score = 199 bits (507), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 115/298 (38%), Positives = 165/298 (55%), Gaps = 11/298 (3%)
Query: 13 ELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVL 72
+ IG+TP+V L + + I KLE P SVKDR A SMI +AE +G I PG VL
Sbjct: 6 QTIGNTPLVKLQRIGPDNGSEIWVKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGD-VL 64
Query: 73 IELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVK 132
IE TSGNTGI LA IAA +GY++ ++MP S ERR +RA GAE+ L G EG +
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEG-AR 123
Query: 133 KGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXXXXXXXXX 192
++ G +L QF NP NP HY TTGPEIW + G++ F
Sbjct: 124 DLALAMSERGEGKLLDQFNNPDNPYAHYTTTGPEIWRQTSGRITHFVSSMGTTGTITGVS 183
Query: 193 RFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEE 252
RFL+E+ + + G++P E + + G I+ A +P + + +++DEV+ + +
Sbjct: 184 RFLREQEKPVTIVGLQPEEGSSIPG-------IRRWPAEYMPGIFNASLVDEVLDIHQND 236
Query: 253 AIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALF 310
A T + LA++EG+ G+SSG +RVA+ G ++V I G+RYLST +F
Sbjct: 237 AENTMRELAVREGIFCGVSSGGAVAGALRVAR--ATPGAIVVAIICDRGDRYLSTGVF 292
>pdb|1M54|A Chain A, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|B Chain B, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|C Chain C, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|D Chain D, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|E Chain E, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|F Chain F, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
Length = 363
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 163/310 (52%), Gaps = 12/310 (3%)
Query: 10 DVTELIGHTPMVYLNNVVD--GCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITP 67
D+ + IG TPMV +N + G + AK E SVKDRI+ MI+DAE G + P
Sbjct: 36 DILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKP 95
Query: 68 GKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGF 127
G T+ IE TSGNTGIGLA AA RGY+ II+MP S E+ +LRALGAE+ F
Sbjct: 96 GDTI-IEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARF 154
Query: 128 ---EGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXX 184
E V + N PN +IL Q+ N +NP HY+TT EI GK+D
Sbjct: 155 DSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGT 214
Query: 185 XXXXXXXXRFLKEKNPNIKVYGIEP-----SESAVLNGGQPGKHLIQGIGAGVIPPVLDV 239
R LKEK P ++ G++P +E LN + + ++GIG IP VLD
Sbjct: 215 GGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPTVLDR 274
Query: 240 AMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPS 299
++D+ + EEA +++L +EGLL G S+G ++ A+ + G+ VVI P
Sbjct: 275 TVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQELQE-GQRCVVILPD 333
Query: 300 AGERYLSTAL 309
+ Y++ L
Sbjct: 334 SVRNYMTKFL 343
>pdb|1JBQ|A Chain A, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|B Chain B, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|C Chain C, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|D Chain D, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|E Chain E, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|F Chain F, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
Length = 435
Score = 187 bits (476), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 118/314 (37%), Positives = 165/314 (52%), Gaps = 12/314 (3%)
Query: 6 EIKKDVTELIGHTPMVYLNNVVD--GCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKG 63
+I D+ + IG TPMV +N + G + AK E SVKDRI+ MI+DAE G
Sbjct: 97 KILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDG 156
Query: 64 LITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123
+ PG T+ IE TSGNTGIGLA AA RGY+ II+MP S E+ +LRALGAE+
Sbjct: 157 TLKPGDTI-IEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPT 215
Query: 124 AVGF---EGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXX 180
F E V + N PN +IL Q+ N +NP HY+TT EI GK+D
Sbjct: 216 NARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVA 275
Query: 181 XXXXXXXXXXXXRFLKEKNPNIKVYGIEP-----SESAVLNGGQPGKHLIQGIGAGVIPP 235
R LKEK P ++ G++P +E LN + + ++GIG IP
Sbjct: 276 SVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPT 335
Query: 236 VLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVV 295
VLD ++D+ + EEA +++L +EGLL G S+G ++ A+ + G+ VV
Sbjct: 336 VLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQELQE-GQRCVV 394
Query: 296 IFPSAGERYLSTAL 309
I P + Y++ L
Sbjct: 395 ILPDSVRNYMTKFL 408
>pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila
pdb|3PC3|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Aminoacrylate
pdb|3PC4|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Serine
Length = 527
Score = 162 bits (409), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 110/311 (35%), Positives = 161/311 (51%), Gaps = 12/311 (3%)
Query: 6 EIKKDVTELIGHTPMVYLNNV--VDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKG 63
+I ++ E+IG TP+V LNN+ DG + AK E + P SVKDRI Y M++DAE++G
Sbjct: 49 QITPNILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAEEQG 108
Query: 64 LITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123
L+ PG T+ IE TSGNTGIGLA A +GYK II+MP S E+ LR LGA++
Sbjct: 109 LLKPGYTI-IEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPT 167
Query: 124 AVGF---EGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXX 180
+ EG + +++ TPN +L Q+ N NP HY+ T EI KVD
Sbjct: 168 EAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEILWQLDNKVDMIVV 227
Query: 181 XXXXXXXXXXXXRFLKEKNPNIKVYGIEP-----SESAVLNGGQPGKHLIQGIGAGVIPP 235
R +KE+ P+ ++ G++P + A LN + ++GIG P
Sbjct: 228 SAGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILARPAELNKTDVQFYEVEGIGYDFPPT 287
Query: 236 VLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVV 295
V D ++D + + S+ L +EGLL G SSG + A++ + G+ VV
Sbjct: 288 VFDDTVVDVWTKIGDSDCFPMSRRLNAEEGLLCGGSSGGAMHAALEHARKLKK-GQRCVV 346
Query: 296 IFPSAGERYLS 306
I P Y++
Sbjct: 347 ILPDGIRNYMT 357
>pdb|3DWG|A Chain A, Crystal Structure Of A Sulfur Carrier Protein Complex
Found In The Cysteine Biosynthetic Pathway Of
Mycobacterium Tuberculosis
pdb|3DWG|B Chain B, Crystal Structure Of A Sulfur Carrier Protein Complex
Found In The Cysteine Biosynthetic Pathway Of
Mycobacterium Tuberculosis
Length = 325
Score = 147 bits (371), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 102/307 (33%), Positives = 153/307 (49%), Gaps = 18/307 (5%)
Query: 13 ELIGHTPMVYLNNVV-------DGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLI 65
+ +G+TP+V L + DG R+ AKLE P S+KDR A MI+ AE GL+
Sbjct: 11 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLL 70
Query: 66 TPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAV 125
PG T+L E TSGNTGI LA A +GY+LI +MP S+ERR +L GA++ +
Sbjct: 71 RPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEG 129
Query: 126 GFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXX 185
G V +E+ P+ +L Q+ NPAN + HY TGPE+ D ++ F
Sbjct: 130 GSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHFVAGLGTT 188
Query: 186 XXXXXXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEV 245
RFL+E N+K+ EP G + ++ + G +P + D +L
Sbjct: 189 GTLMGTGRFLREHVANVKIVAAEPRYG-------EGVYALRNMDEGFVPELYDPEILTAR 241
Query: 246 ITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKL--IVVIFPSAGER 303
+V + +A+ ++ L EG+ GIS+G + V AG+ I ++ AG +
Sbjct: 242 YSVGAVDAVRRTRELVHTEGIFAGISTGAVLHAALGVGAGALAAGERADIALVVADAGWK 301
Query: 304 YLSTALF 310
YLST +
Sbjct: 302 YLSTGAY 308
>pdb|3DWI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The
Cysteine Synthase B
pdb|3DWI|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The
Cysteine Synthase B
Length = 323
Score = 145 bits (365), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 101/307 (32%), Positives = 152/307 (49%), Gaps = 18/307 (5%)
Query: 13 ELIGHTPMVYLNNVV-------DGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLI 65
+ +G+TP+V L + DG R+ AKLE P S+KDR A MI+ AE GL+
Sbjct: 9 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLL 68
Query: 66 TPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAV 125
PG T+L E TSGNTGI LA A +GY+LI +MP S+ERR +L GA++ +
Sbjct: 69 RPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEG 127
Query: 126 GFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXX 185
G V +E+ P+ +L Q+ NPAN + HY TGPE+ D ++ F
Sbjct: 128 GSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHFVAGLGTT 186
Query: 186 XXXXXXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEV 245
RFL+E N+ + EP G + ++ + G +P + D +L
Sbjct: 187 GTLMGTGRFLREHVANVAIVAAEPRYG-------EGVYALRNMDEGFVPELYDPEILTAR 239
Query: 246 ITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKL--IVVIFPSAGER 303
+V + +A+ ++ L EG+ GIS+G + V AG+ I ++ AG +
Sbjct: 240 YSVGAVDAVRRTRELVHTEGIFAGISTGAVLHAALGVGAGALAAGERADIALVVADAGWK 299
Query: 304 YLSTALF 310
YLST +
Sbjct: 300 YLSTGAY 306
>pdb|3DKI|A Chain A, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium
Tuberculosis An O-Phosphoserine Dependent Cysteine
Synthase
pdb|3DKI|B Chain B, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium
Tuberculosis An O-Phosphoserine Dependent Cysteine
Synthase
pdb|3FGP|A Chain A, 2.05 A Crystal Structure Of Cysm From Mycobacterium
Tuberculosis - Open And Closed Conformations
pdb|3FGP|B Chain B, 2.05 A Crystal Structure Of Cysm From Mycobacterium
Tuberculosis - Open And Closed Conformations
Length = 326
Score = 145 bits (365), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 101/307 (32%), Positives = 152/307 (49%), Gaps = 18/307 (5%)
Query: 13 ELIGHTPMVYLNNVV-------DGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLI 65
+ +G+TP+V L + DG R+ AKLE P S+ DR A MI+ AE GL+
Sbjct: 12 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIXDRPAVRMIEQAEADGLL 71
Query: 66 TPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAV 125
PG T+L E TSGNTGI LA A +GY+LI +MP S+ERR +L GA++ +
Sbjct: 72 RPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEG 130
Query: 126 GFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXX 185
G V +E+ P+ +L Q+ NPAN + HY TGPE+ D ++ F
Sbjct: 131 GSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHFVAGLGTT 189
Query: 186 XXXXXXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEV 245
RFL+E N+K+ EP G + ++ + G +P + D +L
Sbjct: 190 GTLMGTGRFLREHVANVKIVAAEPRYG-------EGVYALRNMDEGFVPELYDPEILTAR 242
Query: 246 ITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKL--IVVIFPSAGER 303
+V + +A+ ++ L EG+ GIS+G + V AG+ I ++ AG +
Sbjct: 243 YSVGAVDAVRRTRELVHTEGIFAGISTGAVLHAALGVGAGALAAGERADIALVVADAGWK 302
Query: 304 YLSTALF 310
YLST +
Sbjct: 303 YLSTGAY 309
>pdb|1WKV|A Chain A, Crystal Structure Of O-Phosphoserine Sulfhydrylase
pdb|1WKV|B Chain B, Crystal Structure Of O-Phosphoserine Sulfhydrylase
pdb|3VSA|A Chain A, Crystal Structure Of O-Phosphoserine Sulfhydrylase Without
Acetate
pdb|3VSA|B Chain B, Crystal Structure Of O-Phosphoserine Sulfhydrylase Without
Acetate
Length = 389
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 127/283 (44%), Gaps = 26/283 (9%)
Query: 33 RIAAKLEMMQPCS-SVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASR 91
R+ KLE P S SVKDR A +I + + G +++ + TS N G+ L+ +A
Sbjct: 111 RVWLKLEWYNPFSLSVKDRPAVEIISRLSRR--VEKG-SLVADATSSNFGVALSAVARLY 167
Query: 92 GYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPN-GYI-LGQ 149
GY+ + +P +++ R LGA+V + DP V ++ + N G++ + Q
Sbjct: 168 GYRARVYLPGAAEEFGKLLPRLLGAQV-IVDPEA--PSTVHLLPRVMKDSKNEGFVHVNQ 224
Query: 150 FENPANPEIHYETTGPEIWNDS---GGKVDAFXXXXXXXXXXXXXXRFLKEKNPNIKVYG 206
F N AN E H T EI+ S G + +L+ +P+I+
Sbjct: 225 FYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVL 284
Query: 207 IEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVIT---VSSEEAIETSKLLALK 263
++P++ + G I+ + G +L + MLD T V+ EEA+E +A
Sbjct: 285 VQPAQGDSIPG-------IRRVETG----MLWINMLDISYTLAEVTLEEAMEAVVEVARS 333
Query: 264 EGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLS 306
+GL++G S G + A + VV+ P G +YLS
Sbjct: 334 DGLVIGPSGGAAVKALAKKAAEGDLEPGDYVVVVPDTGFKYLS 376
>pdb|3VSC|A Chain A, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Phospho-L-Serine
pdb|3VSC|B Chain B, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Phospho-L-Serine
pdb|3VSD|A Chain A, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Acetyl-L-Serine
pdb|3VSD|B Chain B, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Acetyl-L-Serine
Length = 389
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 126/283 (44%), Gaps = 26/283 (9%)
Query: 33 RIAAKLEMMQPCS-SVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASR 91
R+ KLE P S SV DR A +I + + G +++ + TS N G+ L+ +A
Sbjct: 111 RVWLKLEWYNPFSLSVADRPAVEIISRLSRR--VEKG-SLVADATSSNFGVALSAVARLY 167
Query: 92 GYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPN-GYI-LGQ 149
GY+ + +P +++ R LGA+V + DP V ++ + N G++ + Q
Sbjct: 168 GYRARVYLPGAAEEFGKLLPRLLGAQV-IVDPEA--PSTVHLLPRVMKDSKNEGFVHVNQ 224
Query: 150 FENPANPEIHYETTGPEIWNDS---GGKVDAFXXXXXXXXXXXXXXRFLKEKNPNIKVYG 206
F N AN E H T EI+ S G + +L+ +P+I+
Sbjct: 225 FYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVL 284
Query: 207 IEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVIT---VSSEEAIETSKLLALK 263
++P++ + G I+ + G +L + MLD T V+ EEA+E +A
Sbjct: 285 VQPAQGDSIPG-------IRRVETG----MLWINMLDISYTLAEVTLEEAMEAVVEVARS 333
Query: 264 EGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLS 306
+GL++G S G + A + VV+ P G +YLS
Sbjct: 334 DGLVIGPSGGAAVKALAKKAAEGDLEPGDYVVVVPDTGFKYLS 376
>pdb|1TDJ|A Chain A, Threonine Deaminase (Biosynthetic) From E. Coli
Length = 514
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
++ V E TP+ + + I K E QP S K R AY+M+ GL
Sbjct: 21 LRAPVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMA-----GLTE 75
Query: 67 PGKTV-LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120
K +I ++GN G+AF +A G K +I+MP+ + + +R G EV L
Sbjct: 76 EQKAHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLL 130
>pdb|3HMK|A Chain A, Crystal Structure Of Serine Racemase
pdb|3HMK|B Chain B, Crystal Structure Of Serine Racemase
pdb|3L6C|A Chain A, X-Ray Crystal Structure Of Rat Serine Racemase In Complex
Wi Malonate A Potent Inhibitor
pdb|3L6C|B Chain B, X-Ray Crystal Structure Of Rat Serine Racemase In Complex
Wi Malonate A Potent Inhibitor
Length = 339
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 106/252 (42%), Gaps = 24/252 (9%)
Query: 37 KLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLI 96
K E+ Q S K R A + I+ L K V+ +SGN G L + A G
Sbjct: 45 KCELFQKTGSFKIRGALNAIRGLIPDTLEGKPKAVVTH-SSGNHGQALTYAAKLEGIPAY 103
Query: 97 IIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANP 156
I++P T +++ ++A GA + ++P+ E + I+ T G ++ + PA
Sbjct: 104 IVVPQTAPNCKKLAIQAYGASIVYSEPS--DESRENVAQRIIQET-EGILVHPNQEPA-- 158
Query: 157 EIHYE-TTGPEIWNDSGGKVDAFXXXXXXXXXXXXXXRFLKEKNPNIKVYGIEPS----- 210
I + T E+ N VDA +K P++KVY EPS
Sbjct: 159 VIAGQGTIALEVLNQV-PLVDALVVPVGGGGMVAGIAITIKTLKPSVKVYAAEPSNADDC 217
Query: 211 -ESAVLNGGQPGKHLIQGIGAGV--------IPPVLDVAMLDEVITVSSEEAIETSKLLA 261
+S + P H + I GV P + D ++D+V TV+ +E ++L+
Sbjct: 218 YQSKLKGELTPNLHPPETIADGVKSSIGLNTWPIIRD--LVDDVFTVTEDEIKYATQLVW 275
Query: 262 LKEGLLVGISSG 273
+ LL+ ++G
Sbjct: 276 ERMKLLIEPTAG 287
>pdb|1VE5|A Chain A, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|B Chain B, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|C Chain C, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|D Chain D, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
Length = 311
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 39 EMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIII 98
E +Q S K R A S K L L+ ++SGN G+A+ A G K +++
Sbjct: 42 EHLQKTGSFKARGALS-------KALALENPKGLLAVSSGNHAQGVAYAAQVLGVKALVV 94
Query: 99 MPSTYSIERRIILRALGAEV 118
MP S ++ RA GAEV
Sbjct: 95 MPEDASPYKKACARAYGAEV 114
>pdb|3L6B|A Chain A, X-Ray Crystal Structure Of Human Serine Racemase In
Complex Malonate A Potent Inhibitor
Length = 346
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 102/251 (40%), Gaps = 22/251 (8%)
Query: 37 KLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLI 96
K E+ Q S K R A + ++ L K V+ +SGN G L + A G
Sbjct: 45 KCELFQKTGSFKIRGALNAVRSLVPDALERKPKAVVTH-SSGNHGQALTYAAKLEGIPAY 103
Query: 97 IIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANP 156
I++P T +++ ++A GA + +P+ V K + G ++ + PA
Sbjct: 104 IVVPQTAPDCKKLAIQAYGASIVYCEPSDESRENVAKR---VTEETEGIMVHPNQEPAVI 160
Query: 157 EIHYETTGPEIWNDSGGKVDAFXXXXXXXXXXXXXXRFLKEKNPNIKVYGIEPSES---- 212
T E+ N VDA +K P++KVY EPS +
Sbjct: 161 A-GQGTIALEVLNQVP-LVDALVVPVGGGGMLAGIAITVKALKPSVKVYAAEPSNADDCY 218
Query: 213 -AVLNGG-----QPGKHLIQG----IGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLAL 262
+ L G P + + G IG P + D ++D++ TV+ +E ++L+
Sbjct: 219 QSKLKGKLMPNLYPPETIADGVKSSIGLNTWPIIRD--LVDDIFTVTEDEIKCATQLVWE 276
Query: 263 KEGLLVGISSG 273
+ LL+ ++G
Sbjct: 277 RMKLLIEPTAG 287
>pdb|3L6R|A Chain A, The Structure Of Mammalian Serine Racemase: Evidence For
Conformational Changes Upon Inhibitor Binding
Length = 346
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 103/259 (39%), Gaps = 38/259 (14%)
Query: 37 KLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLI 96
K E+ Q S R A + ++ L K V+ +SGN G L + A G
Sbjct: 45 KCELFQKTGSFXIRGALNAVRSLVPDALERKPKAVVTH-SSGNHGQALTYAAKLEGIPAY 103
Query: 97 IIMPSTYSIERRIILRALGAEVYLADPA-VGFEGFVKKGEEIL-------NRTPNGYILG 148
I++P T +++ ++A GA + +P+ E K+ E N+ P I G
Sbjct: 104 IVVPQTAPDCKKLAIQAYGASIVYCEPSDESRENVAKRVTEETEGIXVHPNQEP-AVIAG 162
Query: 149 QFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXXXXXXXXXRFLKEKNPNIKVYGIE 208
Q T E+ N VDA +K P++KVY E
Sbjct: 163 Q-----------GTIALEVLNQVP-LVDALVVPVGGGGXLAGIAITVKALKPSVKVYAAE 210
Query: 209 PSES-----AVLNGG-----QPGKHLIQG----IGAGVIPPVLDVAMLDEVITVSSEEAI 254
PS + + L G P + + G IG P + D ++D++ TV+ +E
Sbjct: 211 PSNADDCYQSKLKGKLXPNLYPPETIADGVKSSIGLNTWPIIRD--LVDDIFTVTEDEIK 268
Query: 255 ETSKLLALKEGLLVGISSG 273
++L+ + LL+ ++G
Sbjct: 269 CATQLVWERXKLLIEPTAG 287
>pdb|4D9I|A Chain A, Crystal Structure Of Holo Diaminopropionate Ammonia Lyase
From Escherichia Coli
pdb|4D9I|B Chain B, Crystal Structure Of Holo Diaminopropionate Ammonia Lyase
From Escherichia Coli
pdb|4D9N|A Chain A, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With D-Serine
pdb|4D9N|B Chain B, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With D-Serine
Length = 398
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122
K T GN G G+A+ A G +I MP + ER + LGAE + D
Sbjct: 112 KMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTD 165
>pdb|4D9M|A Chain A, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With Aminoacrylate-Plp
Azomethine Reaction Intermediate
pdb|4D9M|B Chain B, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With Aminoacrylate-Plp
Azomethine Reaction Intermediate
Length = 398
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122
K T GN G G+A+ A G +I MP + ER + LGAE + D
Sbjct: 112 KMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTD 165
>pdb|4D9K|A Chain A, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|D Chain D, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|B Chain B, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|C Chain C, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
Length = 398
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122
K T GN G G+A+ A G +I MP + ER + LGAE + D
Sbjct: 112 KMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTD 165
>pdb|3IAU|A Chain A, The Structure Of The Processed Form Of Threonine Deaminase
Isoform 2 From Solanum Lycopersicum
pdb|3IAU|B Chain B, The Structure Of The Processed Form Of Threonine Deaminase
Isoform 2 From Solanum Lycopersicum
Length = 366
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 88/229 (38%), Gaps = 17/229 (7%)
Query: 37 KLEMMQPCSSVKDRIAYSMIKDAE----DKGLITPGKTVLIELTSGNTGIGLAFIAASRG 92
K E Q S R AY+M+ + DKG+IT ++GN G+A
Sbjct: 80 KREDKQRVFSFXLRGAYNMMSNLSREELDKGVITA--------SAGNHAQGVALAGQRLN 131
Query: 93 YKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFEN 152
I+MP+T + +RALG +V L F+ E+ + YI F++
Sbjct: 132 CVAKIVMPTTTPQIKIDAVRALGGDVVLYGKT--FDEAQTHALELSEKDGLKYI-PPFDD 188
Query: 153 PANPEIHYETTGPEIWNDSGGKVDAFXXXXXXXXXXXXXXRFLKEKNPNIKVYGIEPSES 212
P + T G EI N + A F K+ PN K+ G+EP +
Sbjct: 189 PGVIKGQ-GTIGTEI-NRQLKDIHAVFIPVGGGGLIAGVATFFKQIAPNTKIIGVEPYGA 246
Query: 213 AVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLA 261
A + H ++ + VA++ E +E I+ L+A
Sbjct: 247 ASMTLSLHEGHRVKLSNVDTFADGVAVALVGEYTFAKCQELIDGMVLVA 295
>pdb|2DH5|A Chain A, Crystal Structure Of E. Coli Holo-Trpb
pdb|2DH6|A Chain A, Crystal Structure Of E. Coli Apo-trpb
Length = 397
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 31/138 (22%)
Query: 201 NIKVYGIEPSESAVLNG--GQPGKHLIQGIGAGVIPPVLDV------------AMLD--- 243
N+ + G+EP + G G P KH GI G+ P++ A LD
Sbjct: 249 NVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTEDGQIEESYSISAGLDFPS 308
Query: 244 --------------EVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENA 289
+ ++++ +EA+E K L L EG++ + S +++ + +
Sbjct: 309 VGPQHAYLNSTGRADYVSITDDEALEAFKTLCLHEGIIPALESSHALAHALKMMRENPDK 368
Query: 290 GKLIVVIFPSAGERYLST 307
+L+VV G++ + T
Sbjct: 369 EQLLVVNLSGRGDKDIFT 386
>pdb|2D1F|A Chain A, Structure Of Mycobacterium Tuberculosis Threonine Synthase
pdb|2D1F|B Chain B, Structure Of Mycobacterium Tuberculosis Threonine Synthase
Length = 360
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 11 VTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKT 70
VT L G TP++ N+ I K+E + P S KDR + DA + G+
Sbjct: 32 VTLLEGGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDA-----LAHGQR 86
Query: 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMP 100
++ ++GNT A AA G +++P
Sbjct: 87 AVLCASTGNTSASAAAYAARAGITCAVLIP 116
>pdb|4D9G|A Chain A, Crystal Structure Of Selenomethionine Incorporated Holo
Diaminopropionate Ammonia Lyase From Escherichia Coli
pdb|4D9G|B Chain B, Crystal Structure Of Selenomethionine Incorporated Holo
Diaminopropionate Ammonia Lyase From Escherichia Coli
Length = 398
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122
K T GN G G+A+ A G +I P + ER + LGAE + D
Sbjct: 112 KXTFATTTDGNHGRGVAWAAQQLGQNAVIYXPKGSAQERVDAILNLGAECIVTD 165
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 31.6 bits (70), Expect = 0.69, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRA 113
+G + PG++VLI SG G IA SRG + + + S E+R L+A
Sbjct: 1662 RGRMQPGESVLIHSGSGGVGQAAIAIALSRGCR---VFTTVGSAEKRAYLQA 1710
>pdb|1V71|A Chain A, Crystal Structure Of S.pombe Serine Racemase
pdb|1WTC|A Chain A, Crystal Structure Of S.ponbe Serine Racemase Complex With
Amppcp
pdb|2ZPU|A Chain A, Crystal Structure Of Modified Serine Racemase From
S.Pombe.
pdb|2ZR8|A Chain A, Crystal Structure Of Modified Serine Racemase Complexed
With Serine
Length = 323
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 107/286 (37%), Gaps = 35/286 (12%)
Query: 2 EDKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDR---IAYSMIKD 58
+D + + + TP++ + V VA + K E Q + K R A S + +
Sbjct: 11 DDVASASERIKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNE 70
Query: 59 AEDK-GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117
A+ K G++T +SGN +A A G IIMP + + G +
Sbjct: 71 AQRKAGVLT--------FSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQ 122
Query: 118 VYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDA 177
V + D + K +EI R I+ +++P + T E++ + G +DA
Sbjct: 123 VIMYDRYK--DDREKMAKEISERE-GLTIIPPYDHP-HVLAGQGTAAKELFEEVG-PLDA 177
Query: 178 FXXXXXXXXXXXXXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVL 237
+ PN +VYG+EP N GQ + +
Sbjct: 178 LFVCLGGGGLLSGSALAARHFAPNCEVYGVEPEAG---NDGQQSFRKGSIVHIDTPKTIA 234
Query: 238 DVAM---------------LDEVITVSSEEAIETSKLLALKEGLLV 268
D A +D+++TVS EE I+ K A + ++V
Sbjct: 235 DGAQTQHLGNYTFSIIKEKVDDILTVSDEELIDCLKFYAARMKIVV 280
>pdb|3MZ2|A Chain A, Crystal Structure Of A Glycerophosphoryl Diester
Phosphodiesterase (Bdi_3922) From Parabacteroides
Distasonis Atcc 8503 At 1.55 A Resolution
pdb|3MZ2|B Chain B, Crystal Structure Of A Glycerophosphoryl Diester
Phosphodiesterase (Bdi_3922) From Parabacteroides
Distasonis Atcc 8503 At 1.55 A Resolution
Length = 292
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 193 RFLKEKNPNIKVYGIEPSESAVL---NGGQPGKHLIQGIGAGVIPPVLDV 239
RF EKNPN ++ AV + G P H+ +G + P V +V
Sbjct: 171 RFFYEKNPNFXFEAFVKTKEAVQDYEDNGIPWSHIXAYVGPKITPEVREV 220
>pdb|2ZSJ|A Chain A, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
pdb|2ZSJ|B Chain B, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
pdb|2ZSJ|C Chain C, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
pdb|2ZSJ|D Chain D, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
Length = 352
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 11 VTELIGHTPMVYLNNVVD--GCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPG 68
VT G+TP++ +N+ G +I K E + P S KDR I A + G
Sbjct: 24 VTLYEGNTPLIEADNLARAIGFKGKIYLKYEGLNPTGSFKDRGMTLAISKA-----VEAG 78
Query: 69 KTVLIELTSGNT 80
K +I ++GNT
Sbjct: 79 KRAVICASTGNT 90
>pdb|3R0Z|A Chain A, Crystal Structure Of Apo D-Serine Deaminase From
Salmonella Typhimurium
Length = 448
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 10/107 (9%)
Query: 76 TSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV--YLADPAVGFEGFVKK 133
++GN G+ + ++A G+K+ + M + ++ LR+ G V Y D V V++
Sbjct: 165 STGNLGLSIGIMSACIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEDDYGVA----VEQ 220
Query: 134 GEEILNRTPNGYILGQFENPANPEIHYETTGPEI---WNDSGGKVDA 177
G + PN + + EN + Y G + + G VDA
Sbjct: 221 GRKAAQSDPNCFFIDD-ENSRTLFLGYAVAGQRLKAQFAQQGRVVDA 266
>pdb|3SS7|X Chain X, Crystal Structure Of Holo D-Serine Dehydratase From
Escherichia Coli At 1.55 A Resolution
pdb|3SS9|X Chain X, Crystal Structure Of Holo D-Serine Dehydratase From
Escherichia Coli At 1.97 A Resolution
Length = 442
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 10/107 (9%)
Query: 76 TSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV--YLADPAVGFEGFVKK 133
++GN G+ + ++A G+K+ + M + ++ LR+ G V Y D V V++
Sbjct: 167 STGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYGVA----VEE 222
Query: 134 GEEILNRTPNGYILGQFENPANPEIHYETTGPEI---WNDSGGKVDA 177
G + PN + + EN + Y G + + G VDA
Sbjct: 223 GRKAAQSDPNCFFIDD-ENSRTLFLGYSVAGQRLKAQFAQQGRIVDA 268
>pdb|2VCY|A Chain A, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human
Fas Ii
pdb|2VCY|B Chain B, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human
Fas Ii
Length = 344
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 18/82 (21%)
Query: 41 MQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFI--AASRGYKLIII 98
+ PC+ AY M+ D E + PG +V+ + N+G+G A I AA+ G + I +
Sbjct: 137 VNPCT------AYRMLMDFEQ---LQPGDSVI--QNASNSGVGQAVIQIAAALGLRTINV 185
Query: 99 M---PSTYSIERRIILRALGAE 117
+ P + R L++LGAE
Sbjct: 186 VRDRPDIQKLSDR--LKSLGAE 205
>pdb|1ZSY|A Chain A, The Structure Of Human Mitochondrial 2-Enoyl Thioester
Reductase (Cgi- 63)
Length = 357
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 18/80 (22%)
Query: 43 PCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFI--AASRGYKLIIIM- 99
PC+ AY M+ D E + PG +V+ + N+G+G A I AA+ G + I ++
Sbjct: 152 PCT------AYRMLMDFEQ---LQPGDSVI--QNASNSGVGQAVIQIAAALGLRTINVVR 200
Query: 100 --PSTYSIERRIILRALGAE 117
P + R L++LGAE
Sbjct: 201 DRPDIQKLSDR--LKSLGAE 218
>pdb|3ZYQ|A Chain A, Crystal Structure Of The Tandem Vhs And Fyve Domains Of
Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) At 1.48 A Resolution
pdb|4AVX|A Chain A, Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) Bound To An Ip2 Compound At 1.68 A
Resolution
Length = 226
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 195 LKEKNPNIKVYGIEPSESAVLNGGQ 219
+ +KNP++ +Y +E ES V N GQ
Sbjct: 54 VNDKNPHVALYALEVMESVVKNCGQ 78
>pdb|1A50|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With 5- Fluoroindole Propanol Phosphate
pdb|2WSY|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
pdb|2CLE|B Chain B, Tryptophan Synthase In Complex With N-(4'-
Trifluoromethoxybenzoyl)-2-Amino-1-Ethylphosphate (F6)-
Lowf6 Complex
pdb|2CLH|B Chain B, Tryptophan Synthase In Complex With (Naphthalene-2'-
Sulfonyl)-2-Amino-1-Ethylphosphate (F19)
pdb|2CLM|B Chain B, Tryptophan Synthase (External Aldimine State) In Complex
With N-(4'-Trifluoromethoxybenzoyl)-2-Amino-1-
Ethylphosphate (F6f)
pdb|2CLO|B Chain B, Tryptophan Synthase (External Aldimine State) In Complex
With (Naphthalene-2'-Sulfonyl)-2-Amino-1-Ethylphosphate
(F19)
pdb|2CLF|B Chain B, Tryptophan Synthase In Complex With N-(4'-
Trifluoromethoxybenzoyl)-2-Amino-1-Ethylphosphate (F6) -
Highf6 Complex
Length = 396
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 31/140 (22%)
Query: 199 NPNIKVYGIEPSESAVLNG--GQPGKHLIQGIGAGVIPPVLDVA------------MLD- 243
+ ++ + G+EP + G G P KH GI G+ P++ A LD
Sbjct: 246 DTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDF 305
Query: 244 ----------------EVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPE 287
+ ++++ +EA+E K L EG++ + S +++ +
Sbjct: 306 PSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQP 365
Query: 288 NAGKLIVVIFPSAGERYLST 307
+L+VV G++ + T
Sbjct: 366 EKEQLLVVNLSGRGDKDIFT 385
>pdb|1X1Q|A Chain A, Crystal Structure Of Tryptophan Synthase Beta Chain From
Thermus Thermophilus Hb8
pdb|1X1Q|B Chain B, Crystal Structure Of Tryptophan Synthase Beta Chain From
Thermus Thermophilus Hb8
Length = 418
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 240 AMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVI 296
A + E +V+ EEA+E KLLA EG++ + S +V PE +VVI
Sbjct: 343 AGVAEYASVTDEEALEGFKLLARLEGIIPALESAHAIAYAAKVV--PEXDKDQVVVI 397
>pdb|1UBS|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) With A Mutation Of Lys
87->thr In The B Subunit And In The Presence Of Ligand
L-Serine
pdb|2TRS|B Chain B, Crystal Structures Of Mutant (betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-induced Conformational Changes
pdb|2TSY|B Chain B, Crystal Structures Of Mutant (Betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-Induced Conformational Changes
Length = 397
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 31/140 (22%)
Query: 199 NPNIKVYGIEPSESAVLNG--GQPGKHLIQGIGAGVIPPVLDVA------------MLD- 243
+ ++ + G+EP + G G P KH GI G+ P++ A LD
Sbjct: 247 DTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDF 306
Query: 244 ----------------EVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPE 287
+ ++++ +EA+E K L EG++ + S +++ +
Sbjct: 307 PSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQP 366
Query: 288 NAGKLIVVIFPSAGERYLST 307
+L+VV G++ + T
Sbjct: 367 EKEQLLVVNLSGRGDKDIFT 386
>pdb|1KFE|B Chain B, Crystal Structure Of Alphat183v Mutant Of Tryptophan
Synthase From Salmonella Typhimurium With L-ser Bound To
The Beta Site
Length = 394
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 31/140 (22%)
Query: 199 NPNIKVYGIEPSESAVLNG--GQPGKHLIQGIGAGVIPPVLDVA------------MLD- 243
+ ++ + G+EP + G G P KH GI G+ P++ A LD
Sbjct: 246 DTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDF 305
Query: 244 ----------------EVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPE 287
+ ++++ +EA+E K L EG++ + S +++ +
Sbjct: 306 PSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQP 365
Query: 288 NAGKLIVVIFPSAGERYLST 307
+L+VV G++ + T
Sbjct: 366 EKEQLLVVNLSGRGDKDIFT 385
>pdb|1A5A|B Chain B, Cryo-Crystallography Of A True Substrate,
Indole-3-Glycerol Phosphate, Bound To A Mutant
(Alphad60n) Tryptophan Synthase Alpha2beta2 Complex
Reveals The Correct Orientation Of Active Site Alpha Glu
49
pdb|1A5B|B Chain B, Cryo-Crystallography Of A True Substrate,
Indole-3-Glycerol Phosphate, Bound To A Mutant (Alpha
D60n) Tryptophan Synthase Alpha2beta2 Complex Reveals
The Correct Orientation Of Active Site Alpha Glu 49
pdb|1BEU|B Chain B, Trp Synthase (D60n-Ipp-Ser) With K+
Length = 397
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 31/140 (22%)
Query: 199 NPNIKVYGIEPSESAVLNG--GQPGKHLIQGIGAGVIPPVLDVA------------MLD- 243
+ ++ + G+EP + G G P KH GI G+ P++ A LD
Sbjct: 247 DTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDF 306
Query: 244 ----------------EVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPE 287
+ ++++ +EA+E K L EG++ + S +++ +
Sbjct: 307 PSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQP 366
Query: 288 NAGKLIVVIFPSAGERYLST 307
+L+VV G++ + T
Sbjct: 367 EKEQLLVVNLSGRGDKDIFT 386
>pdb|1TTP|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) In The Presence Of
Cesium, Room Temperature
pdb|1TTQ|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) In The Presence Of
Potassium At Room Temperature
pdb|1A5S|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With 5- Fluoroindole Propanol Phosphate And
L-Ser Bound As Amino Acrylate To The Beta Site
pdb|1BKS|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) From Salmonella
Typhimurium
pdb|1C9D|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Hydroxy-4- Fluorophenylthio)-Butylphosphonic Acid
pdb|1CW2|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Hydroxyphenylsulfinyl)- Butylphosphonic Acid
pdb|1CX9|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Aminophenylthio)- Butylphosphonic Acid
pdb|1C29|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Hydroxyphenylthio)-1- Butenylphosphonic Acid
pdb|1C8V|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Hydroxyphenylthio)- Butylphosphonic Acid
Length = 397
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 31/140 (22%)
Query: 199 NPNIKVYGIEPSESAVLNG--GQPGKHLIQGIGAGVIPPVLDVA------------MLD- 243
+ ++ + G+EP + G G P KH GI G+ P++ A LD
Sbjct: 247 DTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDF 306
Query: 244 ----------------EVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPE 287
+ ++++ +EA+E K L EG++ + S +++ +
Sbjct: 307 PSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQP 366
Query: 288 NAGKLIVVIFPSAGERYLST 307
+L+VV G++ + T
Sbjct: 367 EKEQLLVVNLSGRGDKDIFT 386
>pdb|2J9Z|B Chain B, Tryptophan Synthase T110 Mutant Complex
Length = 397
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 31/140 (22%)
Query: 199 NPNIKVYGIEPSESAVLNG--GQPGKHLIQGIGAGVIPPVLDVA------------MLD- 243
+ ++ + G+EP + G G P KH GI G+ P++ A LD
Sbjct: 247 DTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDF 306
Query: 244 ----------------EVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPE 287
+ ++++ +EA+E K L EG++ + S +++ +
Sbjct: 307 PSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQP 366
Query: 288 NAGKLIVVIFPSAGERYLST 307
+L+VV G++ + T
Sbjct: 367 EKEQLLVVNLSGRGDKDIFT 386
>pdb|2J9Y|B Chain B, Tryptophan Synthase Q114n Mutant In Complex With Compound
Ii
Length = 397
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 31/140 (22%)
Query: 199 NPNIKVYGIEPSESAVLNG--GQPGKHLIQGIGAGVIPPVLDVA------------MLD- 243
+ ++ + G+EP + G G P KH GI G+ P++ A LD
Sbjct: 247 DTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDF 306
Query: 244 ----------------EVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPE 287
+ ++++ +EA+E K L EG++ + S +++ +
Sbjct: 307 PSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQP 366
Query: 288 NAGKLIVVIFPSAGERYLST 307
+L+VV G++ + T
Sbjct: 367 EKEQLLVVNLSGRGDKDIFT 386
>pdb|3PR2|B Chain B, Tryptophan Synthase Indoline Quinonoid Structure With F9
Inhibitor In Alpha Site
Length = 391
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 31/140 (22%)
Query: 199 NPNIKVYGIEPSESAVLNG--GQPGKHLIQGIGAGVIPPVLDVA------------MLD- 243
+ ++ + G+EP + G G P KH GI G+ P++ A LD
Sbjct: 245 DTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDF 304
Query: 244 ----------------EVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPE 287
+ ++++ +EA+E K L EG++ + S +++ +
Sbjct: 305 PSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQP 364
Query: 288 NAGKLIVVIFPSAGERYLST 307
+L+VV G++ + T
Sbjct: 365 EKEQLLVVNLSGRGDKDIFT 384
>pdb|2TYS|B Chain B, Crystal Structures Of Mutant (Betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-Induced Conformational Changes
Length = 397
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 31/140 (22%)
Query: 199 NPNIKVYGIEPSESAVLNG--GQPGKHLIQGIGAGVIPPVLDVA------------MLD- 243
+ ++ + G+EP + G G P KH GI G+ P++ A LD
Sbjct: 247 DTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDF 306
Query: 244 ----------------EVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPE 287
+ ++++ +EA+E K L EG++ + S +++ +
Sbjct: 307 PSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQP 366
Query: 288 NAGKLIVVIFPSAGERYLST 307
+L+VV G++ + T
Sbjct: 367 EKEQLLVVNLSGRGDKDIFT 386
>pdb|1FUY|B Chain B, Crystal Structure Of Betaa169lBETAC170W DOUBLE MUTANT OF
TRYPTOPHAN Synthase Complexed With
5-Fluoro-Indole-Propanol Phosphate
Length = 396
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 31/140 (22%)
Query: 199 NPNIKVYGIEPSESAVLNG--GQPGKHLIQGIGAGVIPPVLDVA------------MLD- 243
+ ++ + G+EP + G G P KH GI G+ P++ A LD
Sbjct: 246 DTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDF 305
Query: 244 ----------------EVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPE 287
+ ++++ +EA+E K L EG++ + S +++ +
Sbjct: 306 PSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQP 365
Query: 288 NAGKLIVVIFPSAGERYLST 307
+L+VV G++ + T
Sbjct: 366 EKEQLLVVNLSGRGDKDIFT 385
>pdb|1QOP|B Chain B, Crystal Structure Of Wild-type Tryptophan Synthase
Complexed With Indole Propanol Phosphate
pdb|1K3U|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With N- [1h-Indol-3-Yl-Acetyl]aspartic Acid
pdb|1K7E|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With N- [1h-Indol-3-Yl-Acetyl]glycine Acid
pdb|1K7F|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With N- [1h-Indol-3-Yl-Acetyl]valine Acid
pdb|1KFB|B Chain B, Crystal Structure Of Alphat183v Mutant Of Tryptophan
Synthase From Salmonella Typhimurium With Indole
Glycerol Phosphate
pdb|1TJP|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With 1-
[(2-Hydroxylphenyl)amino]3-Glycerolphosphate
pdb|1WBJ|B Chain B, Wildtype Tryptophan Synthase Complexed With Glycerol
Phosphate
pdb|2CLI|B Chain B, Tryptophan Synthase In Complex With N-(4'-
Trifluoromethoxybenzenesulfonyl)-2-Amino-1-
Ethylphosphate (F9)
pdb|2CLK|B Chain B, Tryptophan Synthase In Complex With D-Glyceraldehyde 3-
Phosphate (G3p)
pdb|2CLL|B Chain B, Tryptophan Synthase (External Aldimine State) In Complex
With N-(4'-Trifluoromethoxybenzenesulfonyl)-2-Amino-1-
Ethylphosphate (F9)
pdb|2J9X|B Chain B, Tryptophan Synthase In Complex With Gp,
Alpha-D,L-Glycerol- Phosphate, Cs, Ph6.5 - Alpha
Aminoacrylate Form - (Gp)e(A- A)
pdb|3CEP|B Chain B, Structure Of A Tryptophan Synthase Quinonoid Intermediate
Length = 396
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 31/140 (22%)
Query: 199 NPNIKVYGIEPSESAVLNG--GQPGKHLIQGIGAGVIPPVLDVA------------MLD- 243
+ ++ + G+EP + G G P KH GI G+ P++ A LD
Sbjct: 246 DTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDF 305
Query: 244 ----------------EVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPE 287
+ ++++ +EA+E K L EG++ + S +++ +
Sbjct: 306 PSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQP 365
Query: 288 NAGKLIVVIFPSAGERYLST 307
+L+VV G++ + T
Sbjct: 366 EKEQLLVVNLSGRGDKDIFT 385
>pdb|1K7X|B Chain B, Crystal Structure Of The Beta-Ser178pro Mutant Of
Tryptophan Synthase
pdb|1K8Y|B Chain B, Crystal Structure Of The Tryptophan Synthase
Beta-Ser178pro Mutant Complexed With
D,L-Alpha-Glycerol-3-Phosphate
pdb|1K8Z|B Chain B, Crystal Structure Of The Tryptophan Synthase
Beta-Ser178pro Mutant Complexed With
N-[1h-Indol-3-Yl-Acetyl]glycine Acid
Length = 396
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 31/140 (22%)
Query: 199 NPNIKVYGIEPSESAVLNG--GQPGKHLIQGIGAGVIPPVLDVA------------MLD- 243
+ ++ + G+EP + G G P KH GI G+ P++ A LD
Sbjct: 246 DTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDF 305
Query: 244 ----------------EVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPE 287
+ ++++ +EA+E K L EG++ + S +++ +
Sbjct: 306 PSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQP 365
Query: 288 NAGKLIVVIFPSAGERYLST 307
+L+VV G++ + T
Sbjct: 366 EKEQLLVVNLSGRGDKDIFT 385
>pdb|1QOQ|B Chain B, Crystal Structure Of Wild-type Tryptophan Synthase
Complexed With Indole Glycerol Phosphate
Length = 396
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 31/140 (22%)
Query: 199 NPNIKVYGIEPSESAVLNG--GQPGKHLIQGIGAGVIPPVLDVA------------MLD- 243
+ ++ + G+EP + G G P KH GI G+ P++ A LD
Sbjct: 246 DTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDF 305
Query: 244 ----------------EVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPE 287
+ ++++ +EA+E K L EG++ + S +++ +
Sbjct: 306 PSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQP 365
Query: 288 NAGKLIVVIFPSAGERYLST 307
+L+VV G++ + T
Sbjct: 366 EKEQLLVVNLSGRGDKDIFT 385
>pdb|1K8X|B Chain B, Crystal Structure Of Alphat183v Mutant Of Tryptophan
Synthase From Salmonella Typhimurium
pdb|1KFC|B Chain B, Crystal Structure Of Alphat183v Mutant Of Tryptophan
Synthase From Salmonella Typhimurium With Indole
Propanol Phosphate
pdb|1KFJ|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With L-Serine
pdb|1KFK|B Chain B, Crystal Structure Of Tryptophan Synthase From Salmonella
Typhimurium
pdb|2RH9|B Chain B, Tryptophan Synthase Complexed With Igp, Internal Aldimine,
Ph 9.0
pdb|2RHG|B Chain B, Tryptophan Synthase Complexed With Igp, Ph 7.0, Internal
Aldimine
Length = 397
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 31/140 (22%)
Query: 199 NPNIKVYGIEPSESAVLNG--GQPGKHLIQGIGAGVIPPVLDVA------------MLD- 243
+ ++ + G+EP + G G P KH GI G+ P++ A LD
Sbjct: 247 DTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDF 306
Query: 244 ----------------EVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPE 287
+ ++++ +EA+E K L EG++ + S +++ +
Sbjct: 307 PSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQP 366
Query: 288 NAGKLIVVIFPSAGERYLST 307
+L+VV G++ + T
Sbjct: 367 EKEQLLVVNLSGRGDKDIFT 386
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.138 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,129,578
Number of Sequences: 62578
Number of extensions: 359391
Number of successful extensions: 1053
Number of sequences better than 100.0: 81
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 908
Number of HSP's gapped (non-prelim): 85
length of query: 323
length of database: 14,973,337
effective HSP length: 99
effective length of query: 224
effective length of database: 8,778,115
effective search space: 1966297760
effective search space used: 1966297760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)