Query 020655
Match_columns 323
No_of_seqs 211 out of 416
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 04:06:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020655.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020655hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10513 EPL1: Enhancer of pol 99.9 4E-27 8.7E-32 205.4 10.1 141 6-159 1-160 (160)
2 KOG2261 Polycomb enhancer prot 99.9 4.2E-23 9E-28 213.6 7.7 189 98-319 1-192 (716)
3 KOG2261 Polycomb enhancer prot 99.8 1.5E-20 3.2E-25 194.8 2.5 269 1-292 47-331 (716)
4 KOG0954 PHD finger protein [Ge 99.0 1.7E-09 3.7E-14 111.8 12.9 87 75-162 150-252 (893)
5 KOG0955 PHD finger protein BR1 95.7 0.032 6.9E-07 61.8 7.9 63 101-163 136-204 (1051)
6 COG5141 PHD zinc finger-contai 95.5 0.012 2.6E-07 59.7 3.7 44 119-162 128-173 (669)
7 KOG0955 PHD finger protein BR1 93.8 0.057 1.2E-06 59.8 3.9 84 203-297 471-555 (1051)
8 COG5141 PHD zinc finger-contai 75.2 12 0.00026 38.8 7.7 70 201-294 438-511 (669)
9 PF09340 NuA4: Histone acetylt 61.5 25 0.00054 27.4 5.5 41 277-318 2-43 (80)
10 PF14954 LIX1: Limb expression 50.4 18 0.00039 33.7 3.4 41 199-239 21-62 (252)
11 cd04766 HTH_HspR Helix-Turn-He 34.3 1.3E+02 0.0029 23.2 5.8 42 259-300 43-88 (91)
12 PF07310 PAS_5: PAS domain; I 30.7 35 0.00076 28.6 2.0 26 200-225 4-29 (137)
13 PRK10203 hypothetical protein; 28.1 1.1E+02 0.0023 26.0 4.4 55 265-319 58-117 (122)
14 KOG1510 RNA polymerase II holo 27.5 3.4E+02 0.0074 23.5 7.4 47 259-305 86-133 (139)
15 PF09032 Siah-Interact_N: Siah 26.9 1.7E+02 0.0036 22.9 5.0 43 263-305 2-47 (79)
16 PF13591 MerR_2: MerR HTH fami 26.6 1.1E+02 0.0025 23.6 4.1 38 259-296 41-82 (84)
17 PRK10265 chaperone-modulator p 26.0 1.8E+02 0.0039 23.4 5.3 41 259-299 49-93 (101)
18 COG2896 MoaA Molybdenum cofact 23.4 48 0.0011 32.6 1.8 54 100-158 4-57 (322)
19 PF15066 CAGE1: Cancer-associa 20.8 2.1E+02 0.0045 29.7 5.6 35 259-293 458-492 (527)
20 KOG3856 Uncharacterized conser 20.4 1.8E+02 0.0038 24.9 4.2 30 276-305 16-45 (135)
21 PF10176 DUF2370: Protein of u 20.3 76 0.0017 29.8 2.3 16 200-215 207-223 (233)
22 PF04201 TPD52: Tumour protein 20.2 1.1E+02 0.0023 27.3 3.1 21 285-305 30-50 (162)
No 1
>PF10513 EPL1: Enhancer of polycomb-like; InterPro: IPR019542 This domain is found at the N-terminal of EPL1 (Enhancer of polycomb-like) proteins. The EPL1 protein is a member of a histone acetyltransferase complex which is involved in transcriptional activation of selected genes []. It is also present at the N terminus of Jade family proteins.
Probab=99.94 E-value=4e-27 Score=205.40 Aligned_cols=141 Identities=39% Similarity=0.635 Sum_probs=106.6
Q ss_pred ccCCCCCCCCCccccccCCCCCCCCCCCCCCCccc--ccCCCCCccccccchhhhcccCCcccCccccccccC-------
Q 020655 6 IRPRPLDIHKKLPIVKSFKDFEDDNNDTNPPTSSI--AANSTPSATTTRNSHLLRLNSSSFDHDSQEVHQVPS------- 76 (323)
Q Consensus 6 fR~R~ld~~k~l~I~~~~~dl~d~~~~~~~~~~~~--~~~~~p~~~~~~~~~~~~~~~~~~~~Ee~E~h~~~~------- 76 (323)
||+|+||+++|||||++ .|+++++..+.. +.. .+.++++|++..... ...+.|+|++..
T Consensus 1 fR~~~ld~~~~l~I~~~-~d~~~~~~~~~~--~~~~~~~~~~~~gv~~~~~~---------~~~e~e~~~q~~~~~~~~~ 68 (160)
T PF10513_consen 1 FRPRRLDIKKPLPIFRE-EDLDDLDESEDS--SNKNQAVPQSPTGVEKEEKL---------SKQEWEKHLQKPISASQNS 68 (160)
T ss_pred CCCCCCCCCCCeeEEec-hhcccccccccc--cccccccccccCCccchhhc---------cccccccccccccchhhhh
Confidence 99999999999999998 888888763211 111 134555555321100 011466777542
Q ss_pred ----CCCCCCCCCcceEeeCCCccccCCCCCCCCceEEecccccccCC-ccccCCCHhHHHHHHHHhcC-----CCCCCH
Q 020655 77 ----KKSASEIPTPQFVVVDTYERDYSQTFDQPTSYLRARGARAELGD-FVEYDLDNEDEDWLDEFNRD-----QKLLPP 146 (323)
Q Consensus 77 ----~~~~~~IPtP~~~~v~~y~~~y~~~f~~P~~YIr~~~~~~e~~~-~~eYDmDeeDe~wL~~~N~~-----~~~ise 146 (323)
......||+|.++.++ |+..|.+.|..|.+||+|+....+++. .|+||||++|+.||+.+|++ ...||+
T Consensus 69 ~~~~~~~~~~IP~P~~~~~~-~~~~~~~~f~~p~~yi~~~~~~~e~~~~~veYDmDeeD~~wL~~~N~~r~~~~~~~ls~ 147 (160)
T PF10513_consen 69 KSKKKKEKKKIPTPSVRVVD-YEKPYSPPFKRPSSYIRFSEKSVEDLDEGVEYDMDEEDEEWLELLNKKRKSDGLEPLSE 147 (160)
T ss_pred hcccccccccCCCCceEEec-CcCCCCCcccCCccccccccCCHHHhccCcCCCCchHHHHHHHHHHHHhhhcCCCCCCH
Confidence 1256789999999888 999999999999999999953335444 99999999999999999986 358999
Q ss_pred HHHHHHHHHHhhc
Q 020655 147 EKFETLMFKLEVL 159 (323)
Q Consensus 147 ~~FE~imd~fEk~ 159 (323)
+.||.|||+|||.
T Consensus 148 ~~FE~~md~lEke 160 (160)
T PF10513_consen 148 EDFEIIMDRLEKE 160 (160)
T ss_pred HHHHHHHHHHhCC
Confidence 9999999999983
No 2
>KOG2261 consensus Polycomb enhancer protein, EPC [Transcription]
Probab=99.88 E-value=4.2e-23 Score=213.55 Aligned_cols=189 Identities=26% Similarity=0.387 Sum_probs=158.2
Q ss_pred cCCCCCCCCceEEecccccccCCccccCCCHhHHHHHHHHhcCCCCCCHHHHHHHHHHHhhchHHhhhhhccCCCCCCCC
Q 020655 98 YSQTFDQPTSYLRARGARAELGDFVEYDLDNEDEDWLDEFNRDQKLLPPEKFETLMFKLEVLDHKARERAGLITPTLGSP 177 (323)
Q Consensus 98 y~~~f~~P~~YIr~~~~~~e~~~~~eYDmDeeDe~wL~~~N~~~~~ise~~FE~imd~fEk~s~~~~er~g~~~P~~~~~ 177 (323)
|++.|+.|...|+..... .+.++++||||++|+.||.. .+.+.+..||.|+|++|+.+..
T Consensus 1 y~~~~k~~r~~~~~~~~~-l~~~~p~yd~D~~de~~~s~----~~~s~~~~~e~~~dR~e~~s~~--------------- 60 (716)
T KOG2261|consen 1 YPKAAKMPRQLIHGQPIW-LDREKPRYDHDSEDEDFLSV----QMESKPLKFERMRDRLEKCSSH--------------- 60 (716)
T ss_pred CCcccccchhhhcccccc-cCCCCCcccccchhHHHhhh----cccccchhHHHHhcccccCCcc---------------
Confidence 678999999999987665 56789999999999999997 6789999999999999997532
Q ss_pred CCcccCHHHHHHHhhhhccchhHHHHHHHHHHHHHHhhcCCC-cccccCC--CCCCCCCCCcccccCCccccchhhhhhh
Q 020655 178 IPILLQLGVAIEALKDQTTVGYAVFQSVYHYWKEKRERWQKP-ILRRLQP--PPPVNDTNPYNVFRPREKAHRLHTRRMQ 254 (323)
Q Consensus 178 ~~~v~~~dea~~~l~~~~~~~~~~~~~VY~yWk~kR~~~g~p-Llr~l~~--~~~~~d~dPYv~FRrRe~~~~~kTRrmq 254 (323)
..+++.+++..|.+. ....-.||+||.+||+..-.| |++.... .++...++||++||||. +++.||+
T Consensus 61 --~~i~l~edk~~l~~d----d~~~v~~~e~~veK~~~~e~~~L~p~v~~~~~~~~~s~~py~~~rr~t--ekmqtrk-- 130 (716)
T KOG2261|consen 61 --QKIYLEEDKKDLDED----DQRSVEVYEYWVEKREEKEVPSLIPPVKTEKRDGSASNKPYVAFRRRT--EKMQTRK-- 130 (716)
T ss_pred --ceecchhhhhccccc----cceeeeeeehhhhhhhhhccccccCccccccCCccccCCchhhhhhhh--hcccccc--
Confidence 246777887776552 455569999999999766665 8888873 56778899999999993 2455555
Q ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhccccccccc
Q 020655 255 RRENNVQSFEKLRQVRRNLDQAKSILEALIKVFFLTEIAKYMFTDLLFFREKKKRERSWRGKLTY 319 (323)
Q Consensus 255 ~R~nd~~s~eKl~~Lr~dLe~ar~L~~~V~kRE~lK~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 319 (323)
+|+||..|||||+.|+.+|.+|-++++|++.||+.|..|.++...| + +|++..++++|.+.-
T Consensus 131 n~~nd~aSyek~l~~~~dl~~a~t~~em~~~~e~tk~~L~~~t~ei--~-~kr~e~~df~~~~~s 192 (716)
T KOG2261|consen 131 NRKNDEASYEKMLKLRRDLSRAYTILEMEKRREKTKRELLEKTSEI--S-EKRFEMGDFEGEMSS 192 (716)
T ss_pred ccccchHHHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHhhcchhhh--h-hhhhhhccccccccc
Confidence 6789999999999999999999999999999999999998888877 4 568899999998764
No 3
>KOG2261 consensus Polycomb enhancer protein, EPC [Transcription]
Probab=99.79 E-value=1.5e-20 Score=194.77 Aligned_cols=269 Identities=27% Similarity=0.363 Sum_probs=192.9
Q ss_pred CCCCcccCCCCCCCCCccccccCCCCCCCCCCCCCCCcccccCCCCCccccccchhhhcccCCcccCccccc-cccC---
Q 020655 1 MSRLSIRPRPLDIHKKLPIVKSFKDFEDDNNDTNPPTSSIAANSTPSATTTRNSHLLRLNSSSFDHDSQEVH-QVPS--- 76 (323)
Q Consensus 1 ms~~sfR~R~ld~~k~l~I~~~~~dl~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Ee~E~h-~~~~--- 76 (323)
||+.++|..+++.++++++-.+ +++++.... . .+.+ ...+++ |.++.|+| |.+.
T Consensus 47 ~e~~~dR~e~~s~~~~i~l~ed---k~~l~~dd~--~-~v~~---------------~e~~ve-K~~~~e~~~L~p~v~~ 104 (716)
T KOG2261|consen 47 FERMRDRLEKCSSHQKIYLEED---KKDLDEDDQ--R-SVEV---------------YEYWVE-KREEKEVPSLIPPVKT 104 (716)
T ss_pred HHHHhcccccCCccceecchhh---hhccccccc--e-eeee---------------eehhhh-hhhhhccccccCcccc
Confidence 4667777777777777666555 444444111 1 1111 123454 88888999 5432
Q ss_pred -CCCCCCCCCcceEeeCCCccccCC--CCCCCCceEEecccccccC-CccccCCCHhHHHHHHHHhcCCCCCCHHHHHHH
Q 020655 77 -KKSASEIPTPQFVVVDTYERDYSQ--TFDQPTSYLRARGARAELG-DFVEYDLDNEDEDWLDEFNRDQKLLPPEKFETL 152 (323)
Q Consensus 77 -~~~~~~IPtP~~~~v~~y~~~y~~--~f~~P~~YIr~~~~~~e~~-~~~eYDmDeeDe~wL~~~N~~~~~ise~~FE~i 152 (323)
+..+..+++|-+.....+++.+.. .+..+.+|-++-+++.+.. ....|+|+-.++.|.-.++..-..|.+..||..
T Consensus 105 ~~~~~~~s~~py~~~rr~tekmqtrkn~~nd~aSyek~l~~~~dl~~a~t~~em~~~~e~tk~~L~~~t~ei~~kr~e~~ 184 (716)
T KOG2261|consen 105 EKRDGSASNKPYVAFRRRTEKMQTRKNRKNDEASYEKMLKLRRDLSRAYTILEMEKRREKTKRELLEKTSEISEKRFEMG 184 (716)
T ss_pred ccCCccccCCchhhhhhhhhccccccccccchHHHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHhhcchhhhhhhhhhhc
Confidence 233445555555555555554443 3777778877777654443 456788888888888888777778888888888
Q ss_pred HHHHhhchHHhhhhhccCCCCCCCCCCcc-cCHHHHHHHhhhhccchhHHHHHHHHHHHHHHhhcCCCc--ccccCCCCC
Q 020655 153 MFKLEVLDHKARERAGLITPTLGSPIPIL-LQLGVAIEALKDQTTVGYAVFQSVYHYWKEKRERWQKPI--LRRLQPPPP 229 (323)
Q Consensus 153 md~fEk~s~~~~er~g~~~P~~~~~~~~v-~~~dea~~~l~~~~~~~~~~~~~VY~yWk~kR~~~g~pL--lr~l~~~~~ 229 (323)
+...|-.++..-++.|.+.|+++.+.+.+ ++...+...+.. ......++..+|+||+.||.-.|+|. +...++.++
T Consensus 185 df~~~~~s~~~~~~~~~~~P~~~~~~~i~~~s~~~~~~~l~~-~~~~~~~~~~~~~y~r~k~~~~~~~~~~~~~~Q~~pp 263 (716)
T KOG2261|consen 185 DFEGEMSSEVEPERKGAYKPLLSAPFAIILLSPMDTMEALKL-RVLKESFFSSKYDYWREKRKIEGGPKAQMTSQQPLPP 263 (716)
T ss_pred ccccccccccchhhhhccCccccCcchhhcCCHHHHHhhhhh-hhhhhhhhhHHHHHHhhhccccCCchhhhhhhcCCCC
Confidence 87777777777777887889988775522 333334444433 24456778899999999998777654 466677778
Q ss_pred CCCCCCcccccCCccccchhhhhh-----hcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020655 230 VNDTNPYNVFRPREKAHRLHTRRM-----QRRENNVQSFEKLRQVRRNLDQAKSILEALIKVFFLTEI 292 (323)
Q Consensus 230 ~~d~dPYv~FRrRe~~~~~kTRrm-----q~R~nd~~s~eKl~~Lr~dLe~ar~L~~~V~kRE~lK~~ 292 (323)
.++.|||||||+|++++.++|||. |-|.||+++++++++.+.-+..|..|.+...+||..+..
T Consensus 264 v~~~~~yv~fr~r~~r~~~~trr~~~~s~~~een~~e~~~~~Rr~~~~~~~a~~l~~~~~k~e~~~~d 331 (716)
T KOG2261|consen 264 VFDADPYVCFRRRESRHSRKTRRSSLNSEQEEENDAESVFAFRRRRGCLYYAQRLLEKAHKRENKKED 331 (716)
T ss_pred CCCCCCceecccccccchhhccccccchhhhhhhcccchHHHhhhhhccccchhHHHhhcchhccccc
Confidence 999999999999999999999995 559999999999999999999999999999999998765
No 4
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=99.05 E-value=1.7e-09 Score=111.75 Aligned_cols=87 Identities=24% Similarity=0.393 Sum_probs=71.1
Q ss_pred cCCCCCCCCCCcceEeeCCCccccCCCCCCCCceEEecccc-cc----------cCCccccCCCHhHHHHHHHHhcCC--
Q 020655 75 PSKKSASEIPTPQFVVVDTYERDYSQTFDQPTSYLRARGAR-AE----------LGDFVEYDLDNEDEDWLDEFNRDQ-- 141 (323)
Q Consensus 75 ~~~~~~~~IPtP~~~~v~~y~~~y~~~f~~P~~YIr~~~~~-~e----------~~~~~eYDmDeeDe~wL~~~N~~~-- 141 (323)
+..+++..+|+|.+.+++..-. -...|+.|..||..+... .| ....|.||+|..|..||..+|.++
T Consensus 150 Qvpaspd~lpqp~v~~dse~v~-~~~~fs~pkkyivc~~~~~~e~~yn~~~~~lae~tcrydid~~d~awL~~~n~e~~~ 228 (893)
T KOG0954|consen 150 QVPASPDTLPQPSVRVDSEDVQ-PETDFSRPKKYIVCSDGEVPELGYNLLIKDLAESTCRYDIDDMDPAWLQLVNEERAE 228 (893)
T ss_pred cccCCCCcCCCcceeccchhcc-hhhhhcCCcceEEeCCCCCcccchhhhHHHHhhhhhhcccccccHHHHHHhcchHHh
Confidence 4678899999999987763221 235899999999988643 11 246799999999999999999864
Q ss_pred ---CCCCHHHHHHHHHHHhhchHH
Q 020655 142 ---KLLPPEKFETLMFKLEVLDHK 162 (323)
Q Consensus 142 ---~~ise~~FE~imd~fEk~s~~ 162 (323)
..+.+-+||+||..||..|++
T Consensus 229 ~G~~~l~~~~~eRiieelE~~c~k 252 (893)
T KOG0954|consen 229 MGSLELDEGTFERIIEELERRCKK 252 (893)
T ss_pred hCCcccchHHHHHHHHHHHHHHHH
Confidence 589999999999999999987
No 5
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=95.66 E-value=0.032 Score=61.78 Aligned_cols=63 Identities=32% Similarity=0.375 Sum_probs=49.6
Q ss_pred CCCCCCceEEeccccc-ccCCccccCCCHhHHHHHHHHhcC-----CCCCCHHHHHHHHHHHhhchHHh
Q 020655 101 TFDQPTSYLRARGARA-ELGDFVEYDLDNEDEDWLDEFNRD-----QKLLPPEKFETLMFKLEVLDHKA 163 (323)
Q Consensus 101 ~f~~P~~YIr~~~~~~-e~~~~~eYDmDeeDe~wL~~~N~~-----~~~ise~~FE~imd~fEk~s~~~ 163 (323)
.-..|..|..+..... .....++||||++|..||..+|.. ...++.+.||.+||++|+.++..
T Consensus 136 ~~~~p~~~~~~~~~~~~~~~~e~~y~~de~d~~wl~~~n~~~~~~~~~~v~~~~~~~~~dr~eke~~f~ 204 (1051)
T KOG0955|consen 136 APPRPNFYYDEIEKSKETLDEEVEYDLDEEDYSWLDIMNELRTRNGVFDVSIDTFELLVDRLEKESYFK 204 (1051)
T ss_pred CCCCCCcchhhhccchhhhccccccchHHHHHHHHhhhhHHHhhcCCccccccchhhhhhhHHHHHHhh
Confidence 3444666666655432 456789999999999999999974 35889999999999999987763
No 6
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=95.55 E-value=0.012 Score=59.75 Aligned_cols=44 Identities=32% Similarity=0.330 Sum_probs=38.6
Q ss_pred CCccccCCCHhHHHHHHHHhcCC--CCCCHHHHHHHHHHHhhchHH
Q 020655 119 GDFVEYDLDNEDEDWLDEFNRDQ--KLLPPEKFETLMFKLEVLDHK 162 (323)
Q Consensus 119 ~~~~eYDmDeeDe~wL~~~N~~~--~~ise~~FE~imd~fEk~s~~ 162 (323)
...|.||||+-|+.||.=+|+.. ..+|++-||.+|++||++.+.
T Consensus 128 ~f~v~YdlDe~D~m~l~Ylne~~~~e~vS~e~fEii~t~lE~EWf~ 173 (669)
T COG5141 128 FFSVIYDLDEYDTMWLRYLNESAIDENVSEEAFEIIVTRLEKEWFF 173 (669)
T ss_pred cCceeecccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh
Confidence 35689999999999999999864 569999999999999998765
No 7
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=93.81 E-value=0.057 Score=59.84 Aligned_cols=84 Identities=25% Similarity=0.297 Sum_probs=55.6
Q ss_pred HHHHHHHHHHH-hhcCCCcccccCCCCCCCCCCCcccccCCccccchhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHHH
Q 020655 203 QSVYHYWKEKR-ERWQKPILRRLQPPPPVNDTNPYNVFRPREKAHRLHTRRMQRRENNVQSFEKLRQVRRNLDQAKSILE 281 (323)
Q Consensus 203 ~~VY~yWk~kR-~~~g~pLlr~l~~~~~~~d~dPYv~FRrRe~~~~~kTRrmq~R~nd~~s~eKl~~Lr~dLe~ar~L~~ 281 (323)
..|..||-.|| .+.|.||+++|+..-...-+-+ -..++... +|-. -.+++.-.+.|+.++++++.|++
T Consensus 471 ~~i~~~w~~kR~~r~g~pLl~~lq~~~~s~rn~~---~~~~~~D~--~~~~------~~d~~k~~~~L~~~~~s~~~l~e 539 (1051)
T KOG0955|consen 471 DRICKYWYLKRLSRNGAPLLGRLQSLSKSSRNKE---QVGREGDL--KNKA------RVDSLKYWQALRLDLESAQLLVE 539 (1051)
T ss_pred hhhhhhHHHHHHhhCCcchhhhhhhhhhccccch---hcccccCc--cchh------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999 7899999998886321110101 00011100 0110 13456667899999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 020655 282 ALIKVFFLTEIAKYMF 297 (323)
Q Consensus 282 ~V~kRE~lK~~~~~~~ 297 (323)
++++|+++|+++..+.
T Consensus 540 ~~r~r~~lk~~~~~~~ 555 (1051)
T KOG0955|consen 540 LTRKREKLKRILVKSQ 555 (1051)
T ss_pred hhhhHHHHHHHHhchh
Confidence 9999999999855433
No 8
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=75.16 E-value=12 Score=38.76 Aligned_cols=70 Identities=23% Similarity=0.328 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHh-hcCCCcccccCCCCCCCCCCCcccccCCccccchhhhhhhcccCcHHHHHHHHHHH---HHHHHH
Q 020655 201 VFQSVYHYWKEKRE-RWQKPILRRLQPPPPVNDTNPYNVFRPREKAHRLHTRRMQRRENNVQSFEKLRQVR---RNLDQA 276 (323)
Q Consensus 201 ~~~~VY~yWk~kR~-~~g~pLlr~l~~~~~~~d~dPYv~FRrRe~~~~~kTRrmq~R~nd~~s~eKl~~Lr---~dLe~a 276 (323)
.+-+|-.||--||+ +.|.||+-. |.++. .++|+- |.+|-.+|+..- +|+-+.
T Consensus 438 ~ifdIckyw~mKR~~~~g~PL~~~-----------~~~~~-------sl~tl~------~~~sk~R~~~~~~~LqD~YqL 493 (669)
T COG5141 438 NIFDICKYWEMKRKSEIGGPLVIL-----------PDIVY-------SLKTLE------DWMSKRRMREVAKALQDQYQL 493 (669)
T ss_pred hhhHHHHHHHHhhhhcCCCCceec-----------hhhhh-------cccccH------HHHHHHHHHHHHHHHHHHHHH
Confidence 34499999999995 889998741 11111 111221 444555554332 455568
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020655 277 KSILEALIKVFFLTEIAK 294 (323)
Q Consensus 277 r~L~~~V~kRE~lK~~~~ 294 (323)
.+|+++++||-.+|-+|.
T Consensus 494 ~~L~~~~~KR~~~~~qLS 511 (669)
T COG5141 494 LTLVESTAKRQLLKCQLS 511 (669)
T ss_pred HHHHHHHHHHHHHHhHHH
Confidence 899999999999988764
No 9
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=61.51 E-value=25 Score=27.42 Aligned_cols=41 Identities=20% Similarity=0.006 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhhh-cccccccc
Q 020655 277 KSILEALIKVFFLTEIAKYMFTDLLFFREKKKRE-RSWRGKLT 318 (323)
Q Consensus 277 r~L~~~V~kRE~lK~~~~~~~~d~~~~~~~~~~~-~~~~~~~~ 318 (323)
..|.+++.+|++|-.+|..|+..|..+-. -|-. ..-.|+++
T Consensus 2 ~~L~~l~~~k~~Le~~L~~lE~qIy~~Et-~YL~~~~~~GNii 43 (80)
T PF09340_consen 2 KELKELLQKKKKLEKDLAALEKQIYDKET-SYLEDTSPYGNII 43 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHccCcCCCCe
Confidence 35778999999999999999999988866 5554 44555554
No 10
>PF14954 LIX1: Limb expression 1
Probab=50.43 E-value=18 Score=33.68 Aligned_cols=41 Identities=15% Similarity=0.284 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHhhcCC-CcccccCCCCCCCCCCCcccc
Q 020655 199 YAVFQSVYHYWKEKRERWQK-PILRRLQPPPPVNDTNPYNVF 239 (323)
Q Consensus 199 ~~~~~~VY~yWk~kR~~~g~-pLlr~l~~~~~~~d~dPYv~F 239 (323)
.+++.++.+||..|..+... +.=.-+-.....+..-|||||
T Consensus 21 vnvV~~LqeFWq~Kq~r~a~~~~~~lv~YEs~ps~~ppyVcy 62 (252)
T PF14954_consen 21 VNVVEALQEFWQMKQSRGADLKSEALVVYESVPSPSPPYVCY 62 (252)
T ss_pred chHHHHHHHHHHHHHhccccCCCCCeeeeeccCCCCCCeEEE
Confidence 57888999999877765321 100011112233456699987
No 11
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=34.34 E-value=1.3e+02 Score=23.24 Aligned_cols=42 Identities=19% Similarity=0.269 Sum_probs=32.6
Q ss_pred cHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 020655 259 NVQSFEKLRQVRR----NLDQAKSILEALIKVFFLTEIAKYMFTDL 300 (323)
Q Consensus 259 d~~s~eKl~~Lr~----dLe~ar~L~~~V~kRE~lK~~~~~~~~d~ 300 (323)
|..-+..+..|++ .+..++.++.+..+.|.++.++..+...+
T Consensus 43 dv~~l~~i~~L~~d~g~~l~~i~~~l~l~~~~~~l~~~l~~l~~~~ 88 (91)
T cd04766 43 DIERLRRIQRLTQELGVNLAGVKRILELEEELAELRAELDELRARL 88 (91)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666777777877 56788999999999998888877665553
No 12
>PF07310 PAS_5: PAS domain; InterPro: IPR009922 This family contains a number of hypothetical bacterial proteins of unknown function approximately 200 residues long.
Probab=30.71 E-value=35 Score=28.65 Aligned_cols=26 Identities=15% Similarity=0.429 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCcccccC
Q 020655 200 AVFQSVYHYWKEKRERWQKPILRRLQ 225 (323)
Q Consensus 200 ~~~~~VY~yWk~kR~~~g~pLlr~l~ 225 (323)
....++|+||.++|...+-|.-.-+.
T Consensus 4 ~~~~~l~~yW~~~r~~~~~P~R~did 29 (137)
T PF07310_consen 4 PSLRALLAYWRSLRGGRGMPSRSDID 29 (137)
T ss_pred hHHHHHHHHHHHhcCCCCCCchhcCC
Confidence 45678999999999655555544443
No 13
>PRK10203 hypothetical protein; Provisional
Probab=28.05 E-value=1.1e+02 Score=25.98 Aligned_cols=55 Identities=13% Similarity=-0.037 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHhHhHHHHHHHHhhh-ccccccccc
Q 020655 265 KLRQVRRNLDQAKSILEALI-KV---FFLTEIAKYMFTDLLFFREKKKRE-RSWRGKLTY 319 (323)
Q Consensus 265 Kl~~Lr~dLe~ar~L~~~V~-kR---E~lK~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~ 319 (323)
--..||+++..++.++..+. -+ ..+++.+..++.-+....+++... +.|..+|+-
T Consensus 58 ~el~LrKE~~~l~~~l~~~~d~~~~~~~~~k~L~~l~lr~~~~~~~~~~~~~~Y~~ki~~ 117 (122)
T PRK10203 58 PELEQRREAIQLLDLLKGIREDDPQYQEVSRRLSLLELKLRQAGLSTDFLRGDYADKLLN 117 (122)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 34689999999999888876 22 234555555555544444444333 556555543
No 14
>KOG1510 consensus RNA polymerase II holoenzyme and mediator subcomplex, subunit SURB7/SRB7 [Transcription]
Probab=27.54 E-value=3.4e+02 Score=23.50 Aligned_cols=47 Identities=17% Similarity=0.167 Sum_probs=37.6
Q ss_pred cHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 020655 259 NVQSFEKLRQVRRNLD-QAKSILEALIKVFFLTEIAKYMFTDLLFFRE 305 (323)
Q Consensus 259 d~~s~eKl~~Lr~dLe-~ar~L~~~V~kRE~lK~~~~~~~~d~~~~~~ 305 (323)
-+.-.+||.+|..+.+ .+..|.++|.+-|+|.+.+.+...|+...+.
T Consensus 86 ~e~Ql~~i~kLq~en~e~~~el~~~v~~~e~Ll~~vq~~le~~a~~~l 133 (139)
T KOG1510|consen 86 AEAQLEKIKKLQEENEEVALELEELVSKGEKLLEQVQSLLEDIADLQL 133 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888988775 4889999999999999998888888755444
No 15
>PF09032 Siah-Interact_N: Siah interacting protein, N terminal ; InterPro: IPR015120 The N-terminal domain of Siah interacting protein (SIP) adopts a helical hairpin structure with a hydrophobic core stabilised by a classic knobs-and-holes arrangement of side chains contributed by the two amphipathic helices. Little is known about this domain's function, except that it is crucial for interactions with Siah. It has also been hypothesised that SIP can dimerise through this N-terminal domain []. ; PDB: 1YSM_A 2A26_C 2A25_B 1X5M_A.
Probab=26.89 E-value=1.7e+02 Score=22.91 Aligned_cols=43 Identities=23% Similarity=0.333 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHhHHHHHH
Q 020655 263 FEKLRQVRRNLDQAKSILEALIK---VFFLTEIAKYMFTDLLFFRE 305 (323)
Q Consensus 263 ~eKl~~Lr~dLe~ar~L~~~V~k---RE~lK~~~~~~~~d~~~~~~ 305 (323)
.+++..|+.||+-.+.|+....+ +..|.....+|+.+|.....
T Consensus 2 ~~~i~eL~~Dl~El~~Ll~~a~R~rVk~~L~~ei~klE~eI~~~~~ 47 (79)
T PF09032_consen 2 SEQIEELQLDLEELKSLLEQAKRKRVKDLLTNEIRKLETEIKKLKE 47 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHCHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999998643 44556667788888766544
No 16
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=26.55 E-value=1.1e+02 Score=23.56 Aligned_cols=38 Identities=18% Similarity=0.335 Sum_probs=29.2
Q ss_pred cHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 020655 259 NVQSFEKLRQVRRNLDQ----AKSILEALIKVFFLTEIAKYM 296 (323)
Q Consensus 259 d~~s~eKl~~Lr~dLe~----ar~L~~~V~kRE~lK~~~~~~ 296 (323)
+..-.+|+.+|++||+- +-.+++++.+-+.|.+++..+
T Consensus 41 ~l~rl~~~~rL~~Dl~in~~gi~lil~LLd~i~~L~~el~~L 82 (84)
T PF13591_consen 41 DLARLRRIRRLHRDLGINLEGIALILDLLDRIEQLRRELREL 82 (84)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677999999999864 667777888888887776543
No 17
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=26.01 E-value=1.8e+02 Score=23.37 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=32.5
Q ss_pred cHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHh
Q 020655 259 NVQSFEKLRQVRRNLDQ----AKSILEALIKVFFLTEIAKYMFTD 299 (323)
Q Consensus 259 d~~s~eKl~~Lr~dLe~----ar~L~~~V~kRE~lK~~~~~~~~d 299 (323)
+..-.+|+.+|++||+- +-.+++++-+.|.+..++..+..-
T Consensus 49 ~l~r~~~a~rL~~dl~in~~gialvl~LLd~i~~Lr~el~~L~~~ 93 (101)
T PRK10265 49 AAIVVQRAVRLRHELALDWPGIAVALTLLDEIAHLKQENRLLRQR 93 (101)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678999999999864 777888888999988876665553
No 18
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=23.42 E-value=48 Score=32.56 Aligned_cols=54 Identities=20% Similarity=0.303 Sum_probs=40.0
Q ss_pred CCCCCCCceEEecccccccCCccccCCCHhHHHHHHHHhcCCCCCCHHHHHHHHHHHhh
Q 020655 100 QTFDQPTSYLRARGARAELGDFVEYDLDNEDEDWLDEFNRDQKLLPPEKFETLMFKLEV 158 (323)
Q Consensus 100 ~~f~~P~~YIr~~~~~~e~~~~~eYDmDeeDe~wL~~~N~~~~~ise~~FE~imd~fEk 158 (323)
..|.+|-+|+|.|-|. .=.-.|.|+|-+.+..|+.. ...||.++.+.++..|=.
T Consensus 4 D~~gR~~~~LRiSvTd-rCNfrC~YCm~eg~~~~~~~----~~~Ls~eei~~~~~~~~~ 57 (322)
T COG2896 4 DRFGRPVRYLRISVTD-RCNFRCTYCMPEGPLAFLPK----EELLSLEEIRRLVRAFAE 57 (322)
T ss_pred cccCCEeceEEEEEec-CcCCcccccCCCCCcccCcc----cccCCHHHHHHHHHHHHH
Confidence 4688999999999764 11246999999997888763 235788888888777644
No 19
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=20.80 E-value=2.1e+02 Score=29.71 Aligned_cols=35 Identities=23% Similarity=0.229 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020655 259 NVQSFEKLRQVRRNLDQAKSILEALIKVFFLTEIA 293 (323)
Q Consensus 259 d~~s~eKl~~Lr~dLe~ar~L~~~V~kRE~lK~~~ 293 (323)
-+...++|.+||.+|++|-.=+.-+.+||+-.+..
T Consensus 458 KeeeverLQ~lkgelEkat~SALdlLkrEKe~~Eq 492 (527)
T PF15066_consen 458 KEEEVERLQQLKGELEKATTSALDLLKREKETREQ 492 (527)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999998888899999988763
No 20
>KOG3856 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.36 E-value=1.8e+02 Score=24.91 Aligned_cols=30 Identities=17% Similarity=0.107 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 020655 276 AKSILEALIKVFFLTEIAKYMFTDLLFFRE 305 (323)
Q Consensus 276 ar~L~~~V~kRE~lK~~~~~~~~d~~~~~~ 305 (323)
-.+|.++|.+|-.+...++-|+..|..|--
T Consensus 16 kaEL~elikkrqe~eetl~nLe~qIY~~Eg 45 (135)
T KOG3856|consen 16 KAELAELIKKRQELEETLANLERQIYAFEG 45 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 357889999999999999999999877743
No 21
>PF10176 DUF2370: Protein of unknown function (DUF2370); InterPro: IPR019325 Proteins in this family are conserved from fungi to humans. They include the human NEDD4 family-interacting proteins and the yeast BSD2 metal homeostatis proteins.
Probab=20.27 E-value=76 Score=29.81 Aligned_cols=16 Identities=44% Similarity=0.953 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHH-hh
Q 020655 200 AVFQSVYHYWKEKR-ER 215 (323)
Q Consensus 200 ~~~~~VY~yWk~kR-~~ 215 (323)
-++..|++||+-|| ++
T Consensus 207 I~irsi~dY~rVKR~Er 223 (233)
T PF10176_consen 207 IFIRSIIDYWRVKRMER 223 (233)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35579999999999 44
No 22
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=20.25 E-value=1.1e+02 Score=27.27 Aligned_cols=21 Identities=10% Similarity=-0.050 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhHhHHHHHH
Q 020655 285 KVFFLTEIAKYMFTDLLFFRE 305 (323)
Q Consensus 285 kRE~lK~~~~~~~~d~~~~~~ 305 (323)
.||+++.+|.+|+.+|..+|+
T Consensus 30 E~eeLr~EL~KvEeEI~TLrq 50 (162)
T PF04201_consen 30 EREELRSELAKVEEEIQTLRQ 50 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555544443
Done!