Query 020655
Match_columns 323
No_of_seqs 211 out of 416
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 06:14:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020655.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020655hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lv4_A Catestatin, chromograni 88.9 0.21 7.3E-06 29.6 1.9 19 3-21 4-22 (26)
2 4b19_A PEPA1; toxin, toxin apo 58.3 6 0.0002 24.5 2.1 16 199-214 13-28 (30)
3 3dvk_B Voltage-dependent R-typ 36.9 18 0.00062 21.0 1.7 12 204-215 11-22 (23)
4 1l4a_C S-SNAP25 fusion protein 31.0 1.5E+02 0.0052 22.1 6.6 43 258-300 24-71 (83)
5 1b0n_B Protein (SINI protein); 25.0 28 0.00097 24.5 1.4 36 125-160 7-43 (57)
6 1nhl_A Synaptosomal-associated 23.7 1.7E+02 0.006 19.7 6.9 40 264-303 3-47 (54)
7 3dve_B Voltage-dependent N-typ 23.2 21 0.0007 20.7 0.3 12 204-215 10-21 (23)
8 3b5n_C Protein transport prote 21.6 2.3E+02 0.0079 20.4 7.6 50 258-307 9-63 (70)
9 2kt9_A Probable 30S ribosomal 18.6 1.8E+02 0.0062 23.2 5.0 26 200-225 71-96 (116)
10 3bxl_B CAM, voltage-dependent 17.1 65 0.0022 19.1 1.6 11 204-214 7-17 (26)
No 1
>1lv4_A Catestatin, chromogranin A; glycoprotein, amidation, phosphorylation, signaling protein; NMR {Synthetic} SCOP: j.95.1.1
Probab=88.91 E-value=0.21 Score=29.58 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=16.6
Q ss_pred CCcccCCCCCCCCCccccc
Q 020655 3 RLSIRPRPLDIHKKLPIVK 21 (323)
Q Consensus 3 ~~sfR~R~ld~~k~l~I~~ 21 (323)
|+|||+|+-|...|.|-++
T Consensus 4 KlsFRar~Y~Fr~Pg~~~r 22 (26)
T 1lv4_A 4 KLSFRARAYGFRGPGPQLX 22 (26)
T ss_dssp CSCSCCCSSSSCSSCTTC-
T ss_pred eEeeeeeecccCCCccccc
Confidence 7999999999999988765
No 2
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=58.35 E-value=6 Score=24.47 Aligned_cols=16 Identities=19% Similarity=0.603 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHh
Q 020655 199 YAVFQSVYHYWKEKRE 214 (323)
Q Consensus 199 ~~~~~~VY~yWk~kR~ 214 (323)
...+-+.|.||++.|.
T Consensus 13 sGcivalF~hWL~~r~ 28 (30)
T 4b19_A 13 SGCAIAFFSYWLSRRN 28 (30)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3455699999999984
No 3
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=36.89 E-value=18 Score=20.99 Aligned_cols=12 Identities=17% Similarity=0.620 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhh
Q 020655 204 SVYHYWKEKRER 215 (323)
Q Consensus 204 ~VY~yWk~kR~~ 215 (323)
-|++||+..|++
T Consensus 11 lI~d~~r~~k~r 22 (23)
T 3dvk_B 11 MIMDYYKQSKVK 22 (26)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHhcc
Confidence 689999988754
No 4
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=31.01 E-value=1.5e+02 Score=22.15 Aligned_cols=43 Identities=12% Similarity=0.139 Sum_probs=35.2
Q ss_pred CcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH---HHHHhHhH
Q 020655 258 NNVQSFEKLRQVRRNLDQA--KSILEALIKVFFLTEI---AKYMFTDL 300 (323)
Q Consensus 258 nd~~s~eKl~~Lr~dLe~a--r~L~~~V~kRE~lK~~---~~~~~~d~ 300 (323)
.+.+|..++++|-.+.+.+ .+|..+..++|++.+. +..|..|+
T Consensus 24 esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl 71 (83)
T 1l4a_C 24 DSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDM 71 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999998886 8999999999999886 44444554
No 5
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=24.98 E-value=28 Score=24.49 Aligned_cols=36 Identities=11% Similarity=0.297 Sum_probs=25.1
Q ss_pred CCCHhHHHHHHHHhc-CCCCCCHHHHHHHHHHHhhch
Q 020655 125 DLDNEDEDWLDEFNR-DQKLLPPEKFETLMFKLEVLD 160 (323)
Q Consensus 125 DmDeeDe~wL~~~N~-~~~~ise~~FE~imd~fEk~s 160 (323)
.+.+.|.+|+.-+.. +...+|-+++..++......+
T Consensus 7 ~~~~~d~ewl~LI~~Ak~lGlsleEIrefL~l~~~~~ 43 (57)
T 1b0n_B 7 EHFELDQEWVELMVEAKEANISPEEIRKYLLLNKKSA 43 (57)
T ss_dssp --CCCCHHHHHHHHHHHHTTCCHHHHHHHHHHC----
T ss_pred hhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccCC
Confidence 356789999988754 467999999999998776643
No 6
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=23.70 E-value=1.7e+02 Score=19.73 Aligned_cols=40 Identities=15% Similarity=0.007 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHH---HHHHhHhHHHH
Q 020655 264 EKLRQVRRNLDQA--KSILEALIKVFFLTEI---AKYMFTDLLFF 303 (323)
Q Consensus 264 eKl~~Lr~dLe~a--r~L~~~V~kRE~lK~~---~~~~~~d~~~~ 303 (323)
.++++|-.+-+.+ .+|.++..+||++.+. +..|..|+-..
T Consensus 3 ~~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a 47 (54)
T 1nhl_A 3 RRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRET 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHH
Confidence 4556666666664 7899999999999886 55666676444
No 7
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=23.17 E-value=21 Score=20.74 Aligned_cols=12 Identities=8% Similarity=0.681 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhh
Q 020655 204 SVYHYWKEKRER 215 (323)
Q Consensus 204 ~VY~yWk~kR~~ 215 (323)
-|++||++.|.+
T Consensus 10 lI~d~~r~~k~~ 21 (23)
T 3dve_B 10 MIFDFYKQNKTS 21 (26)
T ss_dssp HHHHHHHHTCCC
T ss_pred HHHHHHHHHhhc
Confidence 789999987643
No 8
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=21.63 E-value=2.3e+02 Score=20.40 Aligned_cols=50 Identities=14% Similarity=0.045 Sum_probs=38.4
Q ss_pred CcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH---HHHHhHhHHHHHHHH
Q 020655 258 NNVQSFEKLRQVRRNLDQA--KSILEALIKVFFLTEI---AKYMFTDLLFFREKK 307 (323)
Q Consensus 258 nd~~s~eKl~~Lr~dLe~a--r~L~~~V~kRE~lK~~---~~~~~~d~~~~~~~~ 307 (323)
.+.+|..+++++-.+-+.+ .+|..+..+.|++.+. +..+..|.-....+.
T Consensus 9 esl~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l 63 (70)
T 3b5n_C 9 SSVASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKV 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999998886 8999999999999886 444555554444433
No 9
>2kt9_A Probable 30S ribosomal protein PSRP-3; structural genomics, northeast structural genomics consortium (NESG), target SGR46, PSI-2; NMR {Synechocystis SP}
Probab=18.59 E-value=1.8e+02 Score=23.23 Aligned_cols=26 Identities=12% Similarity=0.330 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCcccccC
Q 020655 200 AVFQSVYHYWKEKRERWQKPILRRLQ 225 (323)
Q Consensus 200 ~~~~~VY~yWk~kR~~~g~pLlr~l~ 225 (323)
+.+.+|-+||.+++....++-+.-++
T Consensus 71 N~~TeiIN~WQe~~~~~k~~~~~eaq 96 (116)
T 2kt9_A 71 NQATEVINFWQDLKNQNKQISMAEAQ 96 (116)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHHHHHHHHHhhhhccccCCHHHHH
Confidence 44568999999999654444444444
No 10
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=17.07 E-value=65 Score=19.12 Aligned_cols=11 Identities=18% Similarity=0.594 Sum_probs=8.6
Q ss_pred HHHHHHHHHHh
Q 020655 204 SVYHYWKEKRE 214 (323)
Q Consensus 204 ~VY~yWk~kR~ 214 (323)
-||+||++-+.
T Consensus 7 mI~e~yrq~K~ 17 (26)
T 3bxl_B 7 MIMDYYKQSKV 17 (26)
T ss_pred HHHHHHHHHHh
Confidence 79999987653
Done!