Query 020655
Match_columns 323
No_of_seqs 211 out of 416
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 06:14:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020655.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020655hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2v4ja3 d.134.1.1 (A:168-241,A 16.1 34 0.0025 27.3 2.4 48 199-246 111-174 (189)
2 d1z7aa1 c.6.2.6 (A:4-304) Hypo 12.3 29 0.0021 29.7 0.9 87 121-212 205-297 (301)
3 d1ykhb1 a.252.1.1 (B:2-130) RN 12.1 2.2E+02 0.016 20.9 6.1 41 259-299 86-127 (129)
4 d1f00i3 d.169.1.3 (I:842-939) 11.1 97 0.007 22.3 3.4 28 182-209 10-40 (98)
5 d1gvna_ a.8.2.1 (A:) Plasmid m 9.7 61 0.0045 22.6 1.7 15 199-213 61-75 (88)
6 d1g41a_ c.37.1.20 (A:) HslU {H 9.7 1.1E+02 0.0082 27.2 4.2 11 203-213 28-38 (443)
7 d1lr1a_ a.155.1.1 (A:) H1 prot 8.7 1.3E+02 0.0096 19.4 3.0 29 132-160 2-36 (57)
8 d1e52a_ a.2.9.1 (A:) C-termina 7.4 1.7E+02 0.013 18.5 3.2 34 142-190 8-41 (56)
9 d1um8a_ c.37.1.20 (A:) ClpX {H 6.3 2.1E+02 0.015 24.5 4.2 31 183-213 7-41 (364)
10 d2d8da1 a.130.1.1 (A:3-82) Cho 6.3 3.4E+02 0.025 17.5 4.8 31 264-294 1-32 (80)
No 1
>d2v4ja3 d.134.1.1 (A:168-241,A:323-437) Dissimilatory sulfite reductase subunit alpha, DsrA {Desulfovibrio vulgaris [TaxId: 881]}
Probab=16.08 E-value=34 Score=27.32 Aligned_cols=48 Identities=23% Similarity=0.487 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHhh---c-------C-CCcccccCCCC-----CCCCCCCcccccCCcccc
Q 020655 199 YAVFQSVYHYWKEKRER---W-------Q-KPILRRLQPPP-----PVNDTNPYNVFRPREKAH 246 (323)
Q Consensus 199 ~~~~~~VY~yWk~kR~~---~-------g-~pLlr~l~~~~-----~~~d~dPYv~FRrRe~~~ 246 (323)
..++..|.+||+..++. . | .+++..++..+ ..-++||||-|..=|+..
T Consensus 111 ~~vv~~ii~~Y~e~ak~~ER~g~~IeRvGle~F~e~v~l~~~~~mv~~p~~~py~~~~~~~~~~ 174 (189)
T d2v4ja3 111 KEVVEKIWDWWMEEGKNRERLGETMKRLSFQKLLEVTEIAPVPQHVKEPRTNPYIFFKEEEVPG 174 (189)
T ss_dssp HHHHHHHHHHHHHHSCTTCCHHHHHHHHCHHHHHHHTTCCCCGGGBSSCCSSCCCCCCGGGSTT
T ss_pred HHHHHHHHHHHHHhCcccchhhhhHHhhCcHHHHHHHCCCCChhhhCCCCCCCccCcccccCCC
Confidence 44666888999877632 2 2 13333443222 235789999998876543
No 2
>d1z7aa1 c.6.2.6 (A:4-304) Hypothetical protein PA1517 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=12.28 E-value=29 Score=29.71 Aligned_cols=87 Identities=20% Similarity=0.254 Sum_probs=44.6
Q ss_pred ccccCCCHhHHHHHHHHhcCCCCCCHHHH-HHHHHHHhhchHHhhhhhc-c----CCCCCCCCCCcccCHHHHHHHhhhh
Q 020655 121 FVEYDLDNEDEDWLDEFNRDQKLLPPEKF-ETLMFKLEVLDHKARERAG-L----ITPTLGSPIPILLQLGVAIEALKDQ 194 (323)
Q Consensus 121 ~~eYDmDeeDe~wL~~~N~~~~~ise~~F-E~imd~fEk~s~~~~er~g-~----~~P~~~~~~~~v~~~dea~~~l~~~ 194 (323)
.+.|.++..|..++.- ....+.+.| +.+.+.|.....+. +..| + +.|++.+....+-.++++.+.+...
T Consensus 205 ~iP~~~~~~D~~~~~~----~~~~~~~~~~~~~~d~fd~l~~e~-~~~~~~~~l~lHP~i~G~P~Ri~~Le~~l~~i~~~ 279 (301)
T d1z7aa1 205 VIPYTLDTNDMRFTQV----QGFNNGEQFFQYLKDAFDVLYEEG-ATAPKMLSIGLHCRLIGRPARMAALERFIQYAQSH 279 (301)
T ss_dssp ECCCCSSSBGGGGGST----TCCSSHHHHHHHHHHHHHHHHHHT-TTSCEEEEEEEETTTTTSHHHHHHHHHHHHHHHTS
T ss_pred Eeccccccchhhhhhc----CCCCCHHHHHHHHHHHHHHHHHhc-CCCCCEEEEeeCCcccCCHHHHHHHHHHHHHHHcC
Confidence 3567777777554421 224566666 56677776654332 1222 2 1466543211233344444444332
Q ss_pred ccchhHHHHHHHHHHHHH
Q 020655 195 TTVGYAVFQSVYHYWKEK 212 (323)
Q Consensus 195 ~~~~~~~~~~VY~yWk~k 212 (323)
..+=.....+|.+||+++
T Consensus 280 ~dVW~at~~eIA~~~~~~ 297 (301)
T d1z7aa1 280 DKVWFARREDIARHWHRE 297 (301)
T ss_dssp SSEEECCHHHHHHHHHHH
T ss_pred CCEEEcCHHHHHHHHHHH
Confidence 122234556999999864
No 3
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.07 E-value=2.2e+02 Score=20.91 Aligned_cols=41 Identities=20% Similarity=0.244 Sum_probs=28.9
Q ss_pred cHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHh
Q 020655 259 NVQSFEKLRQVRRNLDQAK-SILEALIKVFFLTEIAKYMFTD 299 (323)
Q Consensus 259 d~~s~eKl~~Lr~dLe~ar-~L~~~V~kRE~lK~~~~~~~~d 299 (323)
.++...+|.+|-.++..+. .+.+.|++-|.+-..+..+..+
T Consensus 86 ee~Q~~~i~~Le~E~~~~~~el~~~v~e~e~ll~~i~~~i~~ 127 (129)
T d1ykhb1 86 AEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIED 127 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567789999999998865 6667777777765555554444
No 4
>d1f00i3 d.169.1.3 (I:842-939) Intimin {Escherichia coli [TaxId: 562]}
Probab=11.10 E-value=97 Score=22.26 Aligned_cols=28 Identities=14% Similarity=0.330 Sum_probs=21.9
Q ss_pred cCHHHHHHHhhhh---ccchhHHHHHHHHHH
Q 020655 182 LQLGVAIEALKDQ---TTVGYAVFQSVYHYW 209 (323)
Q Consensus 182 ~~~dea~~~l~~~---~~~~~~~~~~VY~yW 209 (323)
+++++|...++-+ .+.....+..||+-|
T Consensus 10 v~Y~~A~~~C~~~~g~LpsSq~eL~~vy~~W 40 (98)
T d1f00i3 10 VTYNDAVNTCKNFGGKLPSSQNELENVFKAW 40 (98)
T ss_dssp ECHHHHHHHHHHTTCBCCSSHHHHHHHHHHH
T ss_pred eEHHHHHHHHHhcCCCCCccHHHHHHHHhcc
Confidence 5788998877653 355578899999999
No 5
>d1gvna_ a.8.2.1 (A:) Plasmid maintenance system epsilon/zeta, antidote epsilon subunit {Streptococcus pyogenes [TaxId: 1314]}
Probab=9.72 E-value=61 Score=22.64 Aligned_cols=15 Identities=27% Similarity=0.651 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHH
Q 020655 199 YAVFQSVYHYWKEKR 213 (323)
Q Consensus 199 ~~~~~~VY~yWk~kR 213 (323)
.+-+++|++||++-.
T Consensus 61 leELeaiheYwrsmn 75 (88)
T d1gvna_ 61 LEELQAVHEYWRSMN 75 (88)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 466789999998754
No 6
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Probab=9.69 E-value=1.1e+02 Score=27.19 Aligned_cols=11 Identities=9% Similarity=0.486 Sum_probs=8.8
Q ss_pred HHHHHHHHHHH
Q 020655 203 QSVYHYWKEKR 213 (323)
Q Consensus 203 ~~VY~yWk~kR 213 (323)
-+||+||+..+
T Consensus 28 vav~nhyrR~~ 38 (443)
T d1g41a_ 28 IALRNRWRRMQ 38 (443)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 39999998555
No 7
>d1lr1a_ a.155.1.1 (A:) H1 protein (H-NS) {Escherichia coli [TaxId: 562]}
Probab=8.74 E-value=1.3e+02 Score=19.42 Aligned_cols=29 Identities=28% Similarity=0.261 Sum_probs=21.7
Q ss_pred HHHHHHhcC------CCCCCHHHHHHHHHHHhhch
Q 020655 132 DWLDEFNRD------QKLLPPEKFETLMFKLEVLD 160 (323)
Q Consensus 132 ~wL~~~N~~------~~~ise~~FE~imd~fEk~s 160 (323)
++|+.+|.- ...+|-+++|.|+++|....
T Consensus 2 e~LK~L~NIRsLRA~aRE~slE~LEe~lEKl~~Vv 36 (57)
T d1lr1a_ 2 EALKILNNIRTLRAQARESTLETLEEMLEKLEVVV 36 (57)
T ss_dssp HHHHHTTHHHHHHHHTTTSCTHHHHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 356666652 35899999999998887654
No 8
>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}
Probab=7.44 E-value=1.7e+02 Score=18.53 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHHHHHhhchHHhhhhhccCCCCCCCCCCcccCHHHHHHH
Q 020655 142 KLLPPEKFETLMFKLEVLDHKARERAGLITPTLGSPIPILLQLGVAIEA 190 (323)
Q Consensus 142 ~~ise~~FE~imd~fEk~s~~~~er~g~~~P~~~~~~~~v~~~dea~~~ 190 (323)
..+|..+++.+|..||+.=..+. .-+.|++|..+
T Consensus 8 ~~ls~~el~k~i~~Le~~M~~aa---------------~~l~FE~AA~~ 41 (56)
T d1e52a_ 8 MDMSPKALQQKIHELEGLMMQHA---------------QNLEFEEAAQI 41 (56)
T ss_dssp CCSCCSHHHHHHHHHHHHHHHHH---------------HTTCHHHHTTH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHH---------------HHCCHHHHHHH
Confidence 46899999999999998755432 13678877653
No 9
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Probab=6.31 E-value=2.1e+02 Score=24.47 Aligned_cols=31 Identities=13% Similarity=0.023 Sum_probs=16.8
Q ss_pred CHHHHHHHhhhhccch----hHHHHHHHHHHHHHH
Q 020655 183 QLGVAIEALKDQTTVG----YAVFQSVYHYWKEKR 213 (323)
Q Consensus 183 ~~dea~~~l~~~~~~~----~~~~~~VY~yWk~kR 213 (323)
|..+..+.|...+-+. ..+..+||+||+..|
T Consensus 7 tP~ei~~~L~~~ViGQd~Akkava~Avrn~~rR~~ 41 (364)
T d1um8a_ 7 APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLS 41 (364)
T ss_dssp CHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCeecChHHHHHHHHHHHHHHHHHHH
Confidence 4445555554332111 123349999998755
No 10
>d2d8da1 a.130.1.1 (A:3-82) Chorismate mutase domain of P-protein {Thermus thermophilus [TaxId: 274]}
Probab=6.30 E-value=3.4e+02 Score=17.46 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 020655 264 EKLRQVRRNLDQA-KSILEALIKVFFLTEIAK 294 (323)
Q Consensus 264 eKl~~Lr~dLe~a-r~L~~~V~kRE~lK~~~~ 294 (323)
|+|..||.++... ..|+.++.+|-.+=.+..
T Consensus 1 e~L~~lR~~ID~iD~~i~~Ll~~R~~~~~~i~ 32 (80)
T d2d8da1 1 ERIQALRKEVDRVNREILRLLSERGRLVQEIG 32 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788889998885 678888999877655433
Done!