BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020656
(323 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2KII6|NGDN_BOVIN Neuroguidin OS=Bos taurus GN=NGDN PE=2 SV=1
Length = 315
Score = 131 bits (330), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 153/315 (48%), Gaps = 47/315 (14%)
Query: 13 ERVKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYC 72
E ++ + P ALL+ ++E + + ++VQ+L KV+ YPT G+S LE K LLL Y
Sbjct: 5 EVLESDLPNAVALLKNLQEQVMAVTAQVQTLTKKVQAKAYPTEKGLSLLEVKDQLLLMYL 64
Query: 73 QSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIE 132
+ + +L KA G S++GHP V LVEIR LEK+RP+D+KL+YQI KL V G+ E
Sbjct: 65 MDLSHLILDKASGGSLQGHPAVLRLVEIRTVLEKLRPLDQKLKYQIDKLVKTAVTGSLSE 124
Query: 133 PVNPSANESGEPQKTEDLLKYRPNPDMLVSKTDMTT----------------EDGAGV-- 174
D L+++P+P ++SK + G G
Sbjct: 125 ---------------NDPLRFKPHPSNMMSKLSSEDEEEDEAEEGQSGASGKKSGKGTAK 169
Query: 175 -YKPPKFAPASMDEDKTSRKERNALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVG 233
Y PP+ P DE + R E+ L + K R+A S+ +REL PEE+R+
Sbjct: 170 KYVPPRLVPVHYDETEAER-EKKRLERAK---RRALSSSVIRELKEQYSDAPEEIRD--- 222
Query: 234 VESRELTRYKEMMEERARQEEELFTRAPLTKMEKKKMKHLKKSRNGLLGLTESFYDEIKS 293
+TR + + R EE + R ++K EK + K + L LT + +I +
Sbjct: 223 ARHPHVTRQSQEDQHRINYEESMMVRLSVSKREKGRRKRANVMSSQLHSLT--HFSDISA 280
Query: 294 L----PIEEKDERPT 304
L P ++D+ PT
Sbjct: 281 LTGGTPHLDEDQNPT 295
>sp|Q28IV8|NGDN_XENTR Neuroguidin OS=Xenopus tropicalis GN=ngdn PE=2 SV=1
Length = 316
Score = 124 bits (312), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 95/301 (31%), Positives = 146/301 (48%), Gaps = 43/301 (14%)
Query: 13 ERVKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYC 72
E + ++ P L R +++ + K+ + VQ+L KV+ Y T G+S+LE K LLL Y
Sbjct: 6 EIILEDVPASVNLFRTLQDQVTKVTAHVQALTQKVRSGIYNTDKGLSFLELKDQLLLFYL 65
Query: 73 QSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIE 132
Q + + +L K G SI+G+P + LVE+R LEK+RPID+KL+YQI KL V G+ E
Sbjct: 66 QDLTHLMLEKTNGKSIKGNPGILRLVELRTVLEKMRPIDQKLKYQIDKLVRASVTGSLGE 125
Query: 133 PVNPSANESGEPQKTEDLLKYRPNPDMLVSKTDM-------TTEDGAGV----------- 174
D L+++PNP L+SK + ED A
Sbjct: 126 ---------------NDPLRFKPNPQNLISKLSEADEGESDSGEDCAESGNAKKPQSKVK 170
Query: 175 -YKPPKFAPASMDEDKTSRKERNALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVG 233
Y PP+ AP D+ + R+ R R +K L S+ +REL PEE+RE
Sbjct: 171 KYIPPRLAPVHYDDTEAEREHRIIERAKKLAL----SSSTIRELKEQYSDAPEEIRE--- 223
Query: 234 VESRELTRYKEMMEERARQEEELFTRAPLTKMEKKKMKHLKKSRNGLLGLTESFYDEIKS 293
+ + R+ + + R EE + R +T+ EK + K + + L LT + +I +
Sbjct: 224 GRAYHMMRHDKEEQHRINHEESMMVRLNMTRKEKARKKRVLAMTSQLNSLTH--FSDISA 281
Query: 294 L 294
L
Sbjct: 282 L 282
>sp|Q5M985|NGDNB_XENLA Neuroguidin-B (Fragment) OS=Xenopus laevis GN=ngdn-b PE=1 SV=1
Length = 316
Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/299 (31%), Positives = 147/299 (49%), Gaps = 43/299 (14%)
Query: 15 VKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQS 74
+ ++ P L +++ + K+ + VQ L KV+ + Y T G+S+LE K LLL Y Q
Sbjct: 7 ILEDVPGSVNLFNTLQDQITKVTAHVQDLTQKVRSSIYNTDKGLSFLELKDQLLLFYLQD 66
Query: 75 IVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPV 134
+ + +L K G SI+G+P + LVE+R LEK+RPID+KL+YQI KL V G+ E
Sbjct: 67 LTHLMLEKTNGKSIKGNPGILRLVELRTVLEKMRPIDQKLKYQIDKLVKAAVTGSLGE-- 124
Query: 135 NPSANESGEPQKTEDLLKYRPNPDMLVSKTDM-------TTEDGA--GV----------Y 175
D L+++PNP L+SK + E+GA GV Y
Sbjct: 125 -------------NDPLRFKPNPQNLMSKLSEPDERESDSGEEGAEGGVAKKPQSKVKRY 171
Query: 176 KPPKFAPASMDEDKTSRKERNALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVGVE 235
PP+ AP D+ + R+ R R +K L S+ +REL PEE+RE
Sbjct: 172 IPPRLAPVHYDDTEAEREHRIVERAKKLAL----SSSTIRELKEQYSDAPEEIRE---GR 224
Query: 236 SRELTRYKEMMEERARQEEELFTRAPLTKMEKKKMKHLKKSRNGLLGLTESFYDEIKSL 294
+ + R+ + + R EE + R +T+ EK + K + + L LT + +I +L
Sbjct: 225 AYHMMRHDKEEQHRINHEESMMVRLNMTRKEKARKKRVLSMTSQLNSLTH--FSDISAL 281
>sp|Q4KLC4|NGDNA_XENLA Neuroguidin-A OS=Xenopus laevis GN=ngdn-a PE=1 SV=1
Length = 317
Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/299 (31%), Positives = 146/299 (48%), Gaps = 43/299 (14%)
Query: 15 VKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQS 74
+ ++ P L +++ + K+ + VQ L KV+ Y T G+S+LE K LLL Y Q
Sbjct: 8 ILEDVPGSVNLFNTLQDQITKVTAHVQDLTQKVRSGIYNTDKGLSFLELKDQLLLFYLQD 67
Query: 75 IVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPV 134
+ + +L K G SI+G+P + LVE+R LEK+RPID+KL+YQI KL V G+ E
Sbjct: 68 LTHLMLEKTNGKSIKGNPGILRLVELRTVLEKMRPIDQKLKYQIDKLVKAAVTGSLGE-- 125
Query: 135 NPSANESGEPQKTEDLLKYRPNPDMLVSKTDM-------TTEDGA--GV----------Y 175
D L+++PNP L+SK + E+GA GV Y
Sbjct: 126 -------------NDPLRFKPNPQNLMSKLSEPDERESDSGEEGAEGGVAKKPQSKVKRY 172
Query: 176 KPPKFAPASMDEDKTSRKERNALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVGVE 235
PP+ AP D+ + R+ R R +K L S+ +REL PEE+RE
Sbjct: 173 IPPRLAPVHYDDTEAEREHRIVERAKKLAL----SSSTIRELKEQYSDAPEEIRE---GR 225
Query: 236 SRELTRYKEMMEERARQEEELFTRAPLTKMEKKKMKHLKKSRNGLLGLTESFYDEIKSL 294
+ + R+ + + R EE + R +T+ EK + K + + L LT + +I +L
Sbjct: 226 AYHMMRHDKEEQHRINHEESMMVRLNMTRKEKARKKRVLSMTSQLNSLTH--FSDISAL 282
>sp|Q8NEJ9|NGDN_HUMAN Neuroguidin OS=Homo sapiens GN=NGDN PE=1 SV=1
Length = 315
Score = 121 bits (303), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 91/299 (30%), Positives = 144/299 (48%), Gaps = 43/299 (14%)
Query: 15 VKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQS 74
++ + P LL+ ++E + + ++V+SL KV+ YPT G+S+LE K LLL Y
Sbjct: 7 LESDLPSAVTLLKNLQEQVMAVTAQVKSLTQKVQAGAYPTEKGLSFLEVKDQLLLMYLMD 66
Query: 75 IVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPV 134
+ + +L KA G S++GH V LVEIR LEK+RP+D+KL+YQI KL V G+ E
Sbjct: 67 LTHLILDKASGGSLQGHDAVLRLVEIRTVLEKLRPLDQKLKYQIDKLIKTAVTGSLSE-- 124
Query: 135 NPSANESGEPQKTEDLLKYRPNPDMLVSK-------------------TDMTTEDGAGVY 175
D L+++P+P ++SK + + + Y
Sbjct: 125 -------------NDPLRFKPHPSNMMSKLSSEDEEEDEAEDDQSEASGKKSVKGVSKKY 171
Query: 176 KPPKFAPASMDEDKTSRKERNALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVGVE 235
PP+ P DE + R E+ L + K R+A S+ +REL PEE+R+
Sbjct: 172 VPPRLVPVHYDETEAER-EKKRLERAK---RRALSSSVIRELKEQYSDAPEEIRD---AR 224
Query: 236 SRELTRYKEMMEERARQEEELFTRAPLTKMEKKKMKHLKKSRNGLLGLTESFYDEIKSL 294
+TR + + R EE + R ++K EK + K + L LT + +I +L
Sbjct: 225 HPHVTRQSQEDQHRINYEESMMVRLSVSKREKGRRKRANVMSSQLHSLTH--FSDISAL 281
>sp|Q9DB96|NGDN_MOUSE Neuroguidin OS=Mus musculus GN=Ngdn PE=1 SV=1
Length = 315
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 140/289 (48%), Gaps = 43/289 (14%)
Query: 25 LLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAK 84
LL+ ++E + + +++Q+L TKV+ Y T G+S+LE K LLL Y + + +L KA
Sbjct: 17 LLKNLQEQVMAVTAQIQALTTKVRAGTYSTEKGLSFLEVKDQLLLMYLMDLSHLILDKAS 76
Query: 85 GLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEP 144
G S++GHP V LVEIR LEK+RP+D+KL+YQI KL V G+ E
Sbjct: 77 GASLQGHPAVLRLVEIRTVLEKLRPLDQKLKYQIDKLVKTAVTGSLSE------------ 124
Query: 145 QKTEDLLKYRPNPDMLV-------------------SKTDMTTEDGAGVYKPPKFAPASM 185
D L+++P+P +V + + + A Y PP+ P
Sbjct: 125 ---NDPLRFKPHPSNMVSKLSSEDEEESEAEEGQSEASGKKSAKGSAKKYVPPRLVPVHY 181
Query: 186 DEDKTSRKERNALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVGVESRELTRYKEM 245
DE + R+++ L K K R+A S+ +REL PEE+R+ +TR +
Sbjct: 182 DETEAEREQKR-LEKAK---RRALSSSVIRELKEQYSDAPEEIRD---ARHPHVTRQSQE 234
Query: 246 MEERARQEEELFTRAPLTKMEKKKMKHLKKSRNGLLGLTESFYDEIKSL 294
+ R EE + R ++K EK + + L LT + +I +L
Sbjct: 235 DQHRVNYEESMMVRLSVSKREKGLRRRASAMSSQLHSLTH--FSDISAL 281
>sp|Q6PFJ1|NGDN_DANRE Neuroguidin OS=Danio rerio GN=ngdn PE=2 SV=1
Length = 315
Score = 115 bits (287), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 90/297 (30%), Positives = 145/297 (48%), Gaps = 47/297 (15%)
Query: 9 SISDERVKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLL 68
++ ++ + ++ P LL + E + + S V+ LI KV+ Y T G+S+L+ ++ LL
Sbjct: 5 AVGNDVIDRDLPTAVRLLNSLTEQIVSVTSHVRELIKKVREKAYQTSKGLSFLDLRYHLL 64
Query: 69 LNYCQSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGG 128
L Y Q I + + K +G S++ + + LV IR LEK+RP+D+KL+YQI KL V G
Sbjct: 65 LFYLQDITHLISLKTEGESLKDNSAIHRLVTIRTVLEKMRPLDQKLKYQIDKLVRTAVTG 124
Query: 129 NAIEPVNPSANESGEPQKTEDLLKYRPNPDMLVSK---TDMTTEDGAGV----------- 174
+ E D L +RPNP LVSK ++ + +DG G
Sbjct: 125 SLSE---------------NDPLHFRPNPQSLVSKLSESEDSDDDGVGGKTKEQKEPSGG 169
Query: 175 --YKPPKFAPASMDEDKTSRKERNALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVV 232
Y PP+ AP D D T +R R EK+ R A +S+ ++EL PEE+R
Sbjct: 170 RRYVPPRIAPMHYDGDLTE-ADRQKERVEKQK-RAALRSSVIQELRQQYSDAPEEIR--- 224
Query: 233 GVESRELTRYKEMMEERARQ--EEELFTRAPLTKMEKKKMKHLKKSRNGLLGLTESF 287
+ R+ ++ EE R+ EE + R T+ +K + + G++G+T
Sbjct: 225 --DRRDFQTDRQGREELNRKNYEESMMVRLSTTRDQKLR-------KRGMMGMTSQL 272
>sp|Q6AXX4|SAS10_RAT Something about silencing protein 10 OS=Rattus norvegicus GN=Utp3
PE=2 SV=1
Length = 470
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 93/172 (54%), Gaps = 18/172 (10%)
Query: 15 VKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQS 74
++KE+P+L L+ ++K L +++ +++ LI V+ P G YL+ K+ L LNYC +
Sbjct: 215 LRKESPELLELIEDLKVKLTEVKDELEPLIQLVEKGVIPPGKGSQYLKTKYNLYLNYCAN 274
Query: 75 IVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPV 134
I +YL+ KA+ + GHPV++ LV R + K+ +D+KL +I+ L + + G + +
Sbjct: 275 ISFYLILKARRVPAHGHPVIERLVTYRNLINKLSVVDQKLSSEIRHLLTAKEGAGKKD-L 333
Query: 135 NPSANESGEPQKTEDLLKYRPNPDMLVSKTDMTTEDGAGVYKPPKFAPASMD 186
NP A L K +P K+ T+ A + + P+F A+++
Sbjct: 334 NPKAK----------LTKTKP-------KSAKQTDVNADLTEEPEFDEAALE 368
>sp|Q9JI13|SAS10_MOUSE Something about silencing protein 10 OS=Mus musculus GN=Utp3 PE=1
SV=1
Length = 469
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 67/110 (60%)
Query: 19 APQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYY 78
+P+L L+ +++ L +++ +++ L+ V+ PT G YL+ K+ L LNYC +I +Y
Sbjct: 219 SPELLELIEDLQAKLTEVKDELEPLLQLVEKGVIPTGRGSEYLKTKYNLYLNYCANISFY 278
Query: 79 LLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGG 128
L+ KA+ + GHPV++ LV R + K+ +D+KL +I+ L + + G
Sbjct: 279 LILKARRVPAHGHPVIERLVTYRNLINKLSVVDQKLSSEIRHLLTAKDGA 328
>sp|Q9NQZ2|SAS10_HUMAN Something about silencing protein 10 OS=Homo sapiens GN=UTP3 PE=1
SV=1
Length = 479
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 69/111 (62%)
Query: 15 VKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQS 74
++KE+P+L L+ ++K L +++ +++ L+ V+ P G YL K+ L LNYC +
Sbjct: 219 LRKESPELLELIEDLKVKLTEVKDELEPLLELVEQGIIPPGKGSQYLRTKYNLYLNYCSN 278
Query: 75 IVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVR 125
I +YL+ KA+ + GHPV++ LV R + K+ +D+KL +I+ L +++
Sbjct: 279 ISFYLILKARRVPAHGHPVIERLVTYRNLINKLSVVDQKLSSEIRHLLTLK 329
>sp|Q09713|YA36_SCHPO Uncharacterized protein C18B11.06 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC18B11.06 PE=1 SV=1
Length = 327
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 105/228 (46%), Gaps = 48/228 (21%)
Query: 67 LLLNYCQSIVYYLLRKAKGLSIEGH-PVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVR 125
LLL+Y Q + + +L K S H VV+ LV++R+ +EKIRP++ ++QY + KL +R
Sbjct: 35 LLLSYVQKLAFLMLVKLDDESFLQHQDVVEKLVQLRIEIEKIRPLENRIQYSVDKL--LR 92
Query: 126 VG------GNAIEPVNPSANESGEPQKTEDLLK--YRPN-------PDMLVSKTDMTTED 170
G+ EP N +G + ++D LK Y+PN D S+ ++ ED
Sbjct: 93 AAGRKEEIGSIKEPEN-----NGNDKDSQDSLKLHYKPNLSEFADDSDGPASENNVVKED 147
Query: 171 GA-----------------GVYKPPKFAPASMDEDKTSRKERNALRKEKETLRQARQSTF 213
G+Y+PP+ +MD +K +R N L E + +
Sbjct: 148 DKSSISSEDEEEELRSAKDGIYRPPRIRAVTMDSEKRTRHRPNHLVDEFVSSDMSSVPQS 207
Query: 214 MRELVNDLEGRPEEVREVVGVESRELTRYKEMMEERARQEEELFTRAP 261
M + ++LE R V+ + REL + M ER EE +TR P
Sbjct: 208 MPSVGSNLEKRG----RVIHADERELQK----MRERIEYEESNYTRLP 247
>sp|Q9I7W5|SAS10_DROME Something about silencing protein 10 OS=Drosophila melanogaster
GN=Sas10 PE=1 SV=2
Length = 428
Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 60/92 (65%)
Query: 18 EAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVY 77
E+P+ L ++ ++ LD++++ ++ ++ V+ ++ P V + Y H +L YC ++ +
Sbjct: 182 ESPEFIILTQDFQQHLDEVKNLLKPVLNYVRKHDVPMVPALQYAGLCHTVLTTYCSNVAF 241
Query: 78 YLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRP 109
YLL KA+ + ++ HPV++ LV+++ +E+++P
Sbjct: 242 YLLLKARRIDVKAHPVIRRLVQLKDLIEELKP 273
>sp|Q5XJ97|C1D_DANRE Nuclear nucleic acid-binding protein C1D OS=Danio rerio GN=c1d PE=2
SV=1
Length = 148
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 26 LREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKG 85
L + L +++ VQ+L++ + + +D + +AK L+ Y + ++++ +G
Sbjct: 18 LNDFDSSLSSVQNMVQTLVSVSRSDRLLKLDPLE--QAKLDLMSAYALNSMFWMYLVTQG 75
Query: 86 LSIEGHPVVQSLVEIRLFLEKIRPI-DRKLQYQIQKLTSVRVGGNAI 131
++ + HP+ Q L IR ++ K++ I DR+ I K + R NA+
Sbjct: 76 VNPKDHPIKQELERIRTYMNKVKEITDRRKAAHIDKEAASRFVRNAL 122
>sp|Q5ZHS3|C1D_CHICK Nuclear nucleic acid-binding protein C1D OS=Gallus gallus GN=C1D
PE=2 SV=1
Length = 142
Score = 37.0 bits (84), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 62 EAKHLLLLNYCQSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPI-DRKLQYQIQK 120
+AK L+ Y + ++++ +G++ + HPV Q L IR ++ K++ I D+K ++ K
Sbjct: 52 QAKLDLVSAYTLNSMFWVYLATQGINPKEHPVKQELERIRTYMNKVKEIADKKKASKLDK 111
Query: 121 LTSVRVGGNAIEPVNP 136
+ R NA+ NP
Sbjct: 112 GAASRFVRNALWEPNP 127
>sp|P40079|LCP5_YEAST U3 small nucleolar ribonucleoprotein protein LCP5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LCP5 PE=1
SV=1
Length = 357
Score = 35.8 bits (81), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 106/224 (47%), Gaps = 42/224 (18%)
Query: 98 VEIRLFLEK-IRPIDRKLQYQIQKLTSVRVG---------GNAIEP---VNPSAN-ESGE 143
++ R+ LE+ ++P+++KL YQ+ KLT V A+E VN S N +S +
Sbjct: 100 IQHRVVLERGVKPLEKKLAYQLDKLTRAYVKMEKEYKDAEKRALEKSTLVNHSGNDDSED 159
Query: 144 PQKTEDLLKYRPNPDMLVSKTDMTT----------EDG-------AGVYKPPKFAPASMD 186
+ +ED + YRPN +++ ++ E+G GVYKPPK A +
Sbjct: 160 DESSEDEIAYRPNTSGIINTNKKSSAYRVEETAKQENGEENDDNETGVYKPPKIT-AVLP 218
Query: 187 EDKTSRKERNALRKEKETLRQARQSTFMRELVNDLEGRPEEV----REVVGVESRELTRY 242
+T ++R R+ K+ ++R M E + + +P+ ++V +
Sbjct: 219 PQQTHFEDRFDAREHKDRSNKSRMQA-MEEYIRESSDQPDWSASIGADIVNHGRGGIKSL 277
Query: 243 KEMMEER--ARQEEELFTRAPLT-KMEKKKMKHLKKSRNGLLGL 283
++ +ER EE+ FTR +T K EK+K K ++ RN + +
Sbjct: 278 RDTEKERRVTSFEEDNFTRLNITNKAEKRKQK--QRERNARMNV 319
>sp|P16919|RHSD_ECOLI Protein RhsD OS=Escherichia coli (strain K12) GN=rhsD PE=2 SV=3
Length = 1426
Score = 35.0 bits (79), Expect = 0.74, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 174 VYKPPKFAPASMDEDKTSRKERNALRKEKETLRQARQS-----TFMRELVNDLEGRPEEV 228
VY+P F P E + +E+ R ETL+Q F ELV L+ EE+
Sbjct: 1058 VYEPGSFTPLIRVETENGEREKAQRRSLAETLQQEGSENGHGVVFPAELVRLLDRLEEEI 1117
Query: 229 R-EVVGVESRE-LTRYKEMMEERARQEEELFTRA 260
R + V ESR L + +E+ ARQ E +T A
Sbjct: 1118 RADRVSSESRAWLAQCGLTVEQLARQVEPEYTPA 1151
>sp|P24211|RHSE_ECOLI Putative protein RhsE OS=Escherichia coli (strain K12) GN=rhsE PE=5
SV=3
Length = 682
Score = 31.6 bits (70), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 9/106 (8%)
Query: 174 VYKPPKFAPASMDEDKTSRKERNALRKEKETLRQ-----ARQSTFMRELVNDLEGRPEEV 228
VY+P F P E + +E+ R ETL+Q F ELV L+ EE+
Sbjct: 333 VYEPGSFTPLIRVETENGEREKAQRRSLAETLQQEGSENGHGVVFPAELVRLLDRLEEEI 392
Query: 229 R-EVVGVESRE-LTRYKEMMEERARQEEELFTRAPLTKMEKKKMKH 272
R + V ESR L + +E+ ARQ E +T P K+ H
Sbjct: 393 RADRVSSESRAWLAQCGLTVEQLARQVEPEYT--PARKVHFYHCDH 436
>sp|F1QIC4|PHR4A_DANRE Phosphatase and actin regulator 4A OS=Danio rerio GN=phactr4a PE=3
SV=2
Length = 725
Score = 31.6 bits (70), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 194 ERNALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVGVESRELTRYKEMMEERARQE 253
+RN L + E +R+A +S R L L RP + +++R++ R+ E +E Q+
Sbjct: 623 QRNILLAKNEEVRRAERSEIKRRLTRKLSQRP----TIADLQARKILRFHEYVESTHAQD 678
Query: 254 EELFTRAPLTKMEKKKMKHLKKSRN 278
+ P TK+ ++K N
Sbjct: 679 YDRRADKPWTKLTPADKAAIRKELN 703
>sp|Q9US54|TAF11_SCHPO Transcription initiation factor TFIID subunit 11
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=taf11 PE=3 SV=1
Length = 199
Score = 31.6 bits (70), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 165 DMTTEDGAGVYKPPKFAPASMDEDKTSRKERNALRKEKETLRQARQSTFMRELVNDLEGR 224
D + AG + A + + +S+++ N R+E+ L + + F ++ + G+
Sbjct: 20 DQSNSPTAGAHAKANTASPAAEPAPSSKEKENWNRQEENDLEEDDRDDFGTAAISKVAGK 79
Query: 225 PEEVREVVGVESRELTRYKEMME---ERARQEEELFTRAPLTKMEKKKMKH 272
P E + E+ E R K ++E E Q E+F RA L K KK+ +
Sbjct: 80 PGETDD----EANEKLRTKYLLESFDEEQMQRYEVFRRANLNKTNVKKLAN 126
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.130 0.351
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,055,083
Number of Sequences: 539616
Number of extensions: 5272564
Number of successful extensions: 19595
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 514
Number of HSP's that attempted gapping in prelim test: 18675
Number of HSP's gapped (non-prelim): 1358
length of query: 323
length of database: 191,569,459
effective HSP length: 117
effective length of query: 206
effective length of database: 128,434,387
effective search space: 26457483722
effective search space used: 26457483722
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)