Query 020656
Match_columns 323
No_of_seqs 188 out of 325
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 06:15:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020656.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020656hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hpq_C ATG17, KLTH0D15642P; au 66.1 13 0.00044 36.6 7.2 111 10-123 235-371 (413)
2 3rh3_A Uncharacterized DUF3829 55.6 30 0.001 32.0 7.3 91 8-107 77-174 (264)
3 2dnx_A Syntaxin-12; snare, HAB 52.9 28 0.00097 28.3 6.1 63 17-81 7-69 (130)
4 3iee_A Putative exported prote 26.6 1.7E+02 0.0057 27.1 7.3 88 11-107 89-182 (270)
5 4h63_H Mediator of RNA polymer 16.7 3.9E+02 0.013 23.3 7.4 61 18-80 5-65 (200)
6 1fio_A SSO1 protein; four heli 15.6 3.8E+02 0.013 22.2 6.9 66 18-83 3-69 (196)
7 4h8s_A DCC-interacting protein 15.3 5E+02 0.017 24.2 8.4 33 16-48 36-68 (407)
8 1xkm_B Distinctin chain B; por 12.0 1.8E+02 0.0061 17.2 2.5 16 93-108 2-17 (26)
9 2akf_A Coronin-1A; coiled coil 11.6 3.1E+02 0.01 17.1 4.0 26 16-41 5-30 (32)
10 1z21_A YOP proteins translocat 11.5 1.7E+02 0.0057 23.5 3.0 45 16-62 53-97 (112)
No 1
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=66.06 E-value=13 Score=36.61 Aligned_cols=111 Identities=14% Similarity=0.126 Sum_probs=67.1
Q ss_pred hhHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC---
Q 020656 10 ISDERVKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGL--- 86 (323)
Q Consensus 10 ~~l~~l~kesPEl~~LL~el~~~l~~v~~~v~~l~~~vk~~~~~~~~GislL~~K~~lLLsY~~nL~~ylllK~~g~--- 86 (323)
+.+++++.|+.||-.+++++++.+..+...+..+...+.... ...-++-..=.+++-.|..+.-|+.++..-+.
T Consensus 235 elleVv~~Da~EL~~V~~eL~~~~~~i~~~~~~~~~~l~~~~---~~~~~l~~~~~~l~~~~~~~~e~l~i~~~i~e~l~ 311 (413)
T 4hpq_C 235 NLFEIVERDDKDLAAINSLLQDAAIDVASFVRKVNMLLDERD---ADKAKMQATLSKLLTELRKHEEYISVFEGISALIQ 311 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 578999999999999999999998887777555444432210 11122222223344444433333332221110
Q ss_pred ----C----------CC---------CChHHHHHHHHHHHHHHHhhHHHhhHHHHHHHhh
Q 020656 87 ----S----------IE---------GHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTS 123 (323)
Q Consensus 87 ----s----------i~---------~hPvv~rLv~~R~~LeKirpLe~kL~yQIdKLl~ 123 (323)
+ +. -+-.+..+.+-|.+.+++..+-.++.-|+++|..
T Consensus 312 ~fk~~~~~~~~~~~~L~~~Y~~f~~aY~~lL~Ev~RRr~~~~~~~~i~~~~~~~L~~l~e 371 (413)
T 4hpq_C 312 KFKASCLEDIRQTRNLLDFYANFERSYHNLLKEVKRRKETAAKLSQILKSCETQLEQINT 371 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 1235666677788888899898899999999984
No 2
>3rh3_A Uncharacterized DUF3829-like protein; all alpha protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=55.59 E-value=30 Score=32.02 Aligned_cols=91 Identities=14% Similarity=0.218 Sum_probs=63.7
Q ss_pred cch-hHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccHHHHHHHH---HHHHHHHHHHHHHH--
Q 020656 8 HSI-SDERVKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLL---LLNYCQSIVYYLLR-- 81 (323)
Q Consensus 8 ~~~-~l~~l~kesPEl~~LL~el~~~l~~v~~~v~~l~~~vk~~~~~~~~GislL~~K~~l---LLsY~~nL~~ylll-- 81 (323)
|.+ ..+.|.+..-+|..-...|.... ..++..++...+ ..|-.|+.+++.+ |.-|-.+|.-+|--
T Consensus 77 Fg~e~r~~L~q~~~~lf~s~~~~yan~-------~~~~SYlk~ed~--~~~akL~~~~~~l~~em~e~k~~ifd~lsp~a 147 (264)
T 3rh3_A 77 FNPEVRQNLKQNYAGLFNVRTQFYDNF-------NKFLAYKKSKDT--AKTAQLLDENYKLSVELSEYKQVIFDILSPLT 147 (264)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 444 56666666666665555555544 445555665443 5899999999999 88788888776544
Q ss_pred -HhcCCCCCCChHHHHHHHHHHHHHHH
Q 020656 82 -KAKGLSIEGHPVVQSLVEIRLFLEKI 107 (323)
Q Consensus 82 -K~~g~si~~hPvv~rLv~~R~~LeKi 107 (323)
+++...+.|||+-+.++..|.++--+
T Consensus 148 eqAE~vlL~DhPLKeqIla~kkm~~~~ 174 (264)
T 3rh3_A 148 EQAESELLADEPLKDQIMAMRKMSGTV 174 (264)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCchHHHHHHHHHHHHHH
Confidence 56777899999999999877666543
No 3
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.91 E-value=28 Score=28.34 Aligned_cols=63 Identities=6% Similarity=0.077 Sum_probs=50.1
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Q 020656 17 KEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLR 81 (323)
Q Consensus 17 kesPEl~~LL~el~~~l~~v~~~v~~l~~~vk~~~~~~~~GislL~~K~~lLLsY~~nL~~ylll 81 (323)
.+.|||..|...+...|..+...|..|-..++. +.|.....=|.-+-|-+..||..|+==+-.
T Consensus 7 ~d~~ef~~l~~~is~~I~~In~~vs~l~r~v~~--LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~ 69 (130)
T 2dnx_A 7 GQLRDFSSIIQTCSGNIQRISQATAQIKNLMSQ--LGTKQDSSKLQENLQQLQHSTNQLAKETNE 69 (130)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999888877754 445556666888888999999888764433
No 4
>3iee_A Putative exported protein; YP_212931.1, hypothetical protein BF3319 from bacteroides FR structural genomics; HET: MSE; 1.70A {Bacteroides fragilis nctc 9343}
Probab=26.58 E-value=1.7e+02 Score=27.14 Aligned_cols=88 Identities=15% Similarity=0.234 Sum_probs=54.9
Q ss_pred hHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccHHHHHHHH---HHHHHHHHHHHHHH---Hhc
Q 020656 11 SDERVKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLL---LLNYCQSIVYYLLR---KAK 84 (323)
Q Consensus 11 ~l~~l~kesPEl~~LL~el~~~l~~v~~~v~~l~~~vk~~~~~~~~GislL~~K~~l---LLsY~~nL~~ylll---K~~ 84 (323)
..+.|.+..-+|..-...|... ...+...++...+ ..|--++.+++.+ +..|-.+|.-.|-. +++
T Consensus 89 ~rqnL~q~~~~lf~s~~~~~an-------~~~~~sYlkaed~--kkgkKL~~~n~~l~~~~~e~k~~ifd~Lsp~aeqAE 159 (270)
T 3iee_A 89 TRRNLKQNYTGLFQARTEFYAN-------FDTYLSYLKKKDV--TNAKKLLDVNYQLSTQMSEYKQNIFDILSPFTEQAE 159 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4445555555554444444443 4445555555433 3777888877665 44566666555544 566
Q ss_pred CCCCCCChHHHHHHHHHHHHHHH
Q 020656 85 GLSIEGHPVVQSLVEIRLFLEKI 107 (323)
Q Consensus 85 g~si~~hPvv~rLv~~R~~LeKi 107 (323)
...+.|||+-+.++..|.++.-+
T Consensus 160 ~~lL~DhPLKeqIla~kkm~~~~ 182 (270)
T 3iee_A 160 LVLLVDNPLKAQIMSVRKMSSTM 182 (270)
T ss_dssp HHHTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHccCchHHHHHHHHHHHHHH
Confidence 67899999999999988886543
No 5
>4h63_H Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 3.40A {Schizosaccharomyces pombe}
Probab=16.75 E-value=3.9e+02 Score=23.32 Aligned_cols=61 Identities=8% Similarity=0.158 Sum_probs=45.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Q 020656 18 EAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLL 80 (323)
Q Consensus 18 esPEl~~LL~el~~~l~~v~~~v~~l~~~vk~~~~~~~~GislL~~K~~lLLsY~~nL~~yll 80 (323)
++++-+.-|..+...+.++..+|..|+..+.... +.. -=+=|.-++.+|++-+++|+-.|-
T Consensus 5 ~~~~~~~~LEs~R~Rl~qL~~Sl~~l~~~l~~~~-~lp-~W~sll~q~~vl~~qL~sl~~~L~ 65 (200)
T 4h63_H 5 STEKTVESLEAIRHRIAQIVQSLTHFLAILHQSE-SLS-PWPTIHKNFNILLSQIHSLSNNLA 65 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCC-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCC-CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566789999999999999999998885422 212 233356679999999999998774
No 6
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=15.62 E-value=3.8e+02 Score=22.20 Aligned_cols=66 Identities=11% Similarity=0.076 Sum_probs=45.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHh
Q 020656 18 EAPQLAALLREMKEGLDKLRSKVQSLITKVKG-NNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKA 83 (323)
Q Consensus 18 esPEl~~LL~el~~~l~~v~~~v~~l~~~vk~-~~~~~~~GislL~~K~~lLLsY~~nL~~ylllK~ 83 (323)
+.|+|+....++...|..+...|..|-.+... ...+...-.+-+.-+-+-+...+..++--+-.++
T Consensus 3 ~~~~f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~l 69 (196)
T 1fio_A 3 DFVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEI 69 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999988777654 1111111112466677777788777776654443
No 7
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=15.33 E-value=5e+02 Score=24.17 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=28.2
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020656 16 KKEAPQLAALLREMKEGLDKLRSKVQSLITKVK 48 (323)
Q Consensus 16 ~kesPEl~~LL~el~~~l~~v~~~v~~l~~~vk 48 (323)
-.|+|.|-+.|..+.+.++.+...+..++...+
T Consensus 36 ~~DSP~FRa~l~~~E~~~~~l~~~l~kl~k~~~ 68 (407)
T 4h8s_A 36 LQDSPQTRSLLSVFEEDAGTLTDYTNQLLQAMQ 68 (407)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 359999999999999999999998888876653
No 8
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=12.02 E-value=1.8e+02 Score=17.20 Aligned_cols=16 Identities=38% Similarity=0.748 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 020656 93 VVQSLVEIRLFLEKIR 108 (323)
Q Consensus 93 vv~rLv~~R~~LeKir 108 (323)
.|.-|++.|.+||++.
T Consensus 2 lvsgliearkyleqlh 17 (26)
T 1xkm_B 2 LVSGLIEARKYLEQLH 17 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4677899999998753
No 9
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=11.57 E-value=3.1e+02 Score=17.09 Aligned_cols=26 Identities=31% Similarity=0.610 Sum_probs=16.5
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHH
Q 020656 16 KKEAPQLAALLREMKEGLDKLRSKVQ 41 (323)
Q Consensus 16 ~kesPEl~~LL~el~~~l~~v~~~v~ 41 (323)
..+.-.|.++++++...++-+.+.|+
T Consensus 5 ee~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 5 EEDVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445566677777777776666654
No 10
>1z21_A YOP proteins translocation protein H; plague, type III secretion, YOPR, cell invasion; 1.50A {Yersinia pestis} SCOP: a.243.1.2
Probab=11.51 E-value=1.7e+02 Score=23.51 Aligned_cols=45 Identities=18% Similarity=0.350 Sum_probs=24.5
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccHHH
Q 020656 16 KKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLE 62 (323)
Q Consensus 16 ~kesPEl~~LL~el~~~l~~v~~~v~~l~~~vk~~~~~~~~GislL~ 62 (323)
.-|.|||.+++.+|.---..-...+-.++..++.+ ....|..||+
T Consensus 53 aiD~pELRa~~ReFdPlg~r~EtvLL~vL~~ik~~--~~~~g~eyL~ 97 (112)
T 1z21_A 53 AIDLPELRSVLQQFDSFGKRWEAILLQVLEGIKPN--ESQVGLPYLS 97 (112)
T ss_dssp HHHHHHHHHHHHHHSCSSHHHHHHHHHHHHTC----------CHHHH
T ss_pred ccccHHHHHHHHHhCcchhHHHHHHHHHHHHcccC--CCCCchHHHH
Confidence 34889999999999653333333444455555442 2357888887
Done!