BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020658
(323 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XMB|A Chain A, X-ray Structure Of Iaa-aminoacid Hydrolase From
Arabidopsis Thaliana Gene At5g56660
pdb|2Q43|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Iaa-Aminoacid Hydrolase From Arabidopsis Thaliana Gene
At5g56660
Length = 418
Score = 359 bits (921), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 180/310 (58%), Positives = 231/310 (74%), Gaps = 5/310 (1%)
Query: 8 LQELVEWEHKSKIDGKMHACGHDAHVAMLLGAAKILQEMRETLKGTVVLIFQPAEERGTG 67
+QE VEWEHKSKI GKMHACGHD HV MLLGAAKIL E R L+GTVVLIFQPAEE +G
Sbjct: 97 IQEGVEWEHKSKIAGKMHACGHDGHVTMLLGAAKILHEHRHHLQGTVVLIFQPAEEGLSG 156
Query: 68 AKDMIQEGVLENVEAIFGLHLVHKYPTGVVASRPGDFLAGCGSFKAKISGKGGHAAIPQH 127
AK M +EG L+NVEAIFG+HL + P G ASR G FLAG G F+A I+GKGGHAAIPQH
Sbjct: 157 AKKMREEGALKNVEAIFGIHLSARIPFGKAASRAGSFLAGAGVFEAVITGKGGHAAIPQH 216
Query: 128 CIDPILAVSSSVISLQNIVSREIDPLDSQVVSVAMINGGSSYNMIPDSATVAGTFRAFNK 187
IDP++A SS V+SLQ +VSRE DPLDS+VV+V+ +NGG+++N+IPDS T+ GT RAF
Sbjct: 217 TIDPVVAASSIVLSLQQLVSRETDPLDSKVVTVSKVNGGNAFNVIPDSITIGGTLRAFTG 276
Query: 188 KRFNALRERIEEIIKGQAAVHRCSAEVDFSGREHPTLPPTMNDVRIYQHVRRVTAEILGE 247
F L++R++E+I QAAVHRC+A V+ + +PPT+N+ +Y+ ++V ++LG+
Sbjct: 277 --FTQLQQRVKEVITKQAAVHRCNASVNLTPNGREPMPPTVNNKDLYKQFKKVVRDLLGQ 334
Query: 248 EN-VKLAPIFTGSEDFAFFLDEIPGSFLLLGMLNDSVGSLYPLHSPYFTIDEHVLPIGAV 306
E V+ AP+ GSEDF++F + IPG F LLGM +++ G HSP + I+E VLP GA
Sbjct: 335 EAFVEAAPVM-GSEDFSYFAETIPGHFSLLGMQDETNGYASS-HSPLYRINEDVLPYGAA 392
Query: 307 IHAAFAHSYL 316
IHA+ A YL
Sbjct: 393 IHASMAVQYL 402
>pdb|1YSJ|A Chain A, Crystal Structure Of Bacillus Subtilis Yxep Protein
(Apc1829), A Dinuclear Metal Binding Peptidase From M20
Family
pdb|1YSJ|B Chain B, Crystal Structure Of Bacillus Subtilis Yxep Protein
(Apc1829), A Dinuclear Metal Binding Peptidase From M20
Family
Length = 404
Score = 203 bits (516), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 118/305 (38%), Positives = 156/305 (51%), Gaps = 11/305 (3%)
Query: 8 LQELVEWEHKSKIDGKMHACGHDAHVAMLLGAAKILQEMRETLKGTVVLIFQPAEERGTG 67
+QE SK+DG HACGHD H A ++G A +L + R LKGTV IFQPAEE G
Sbjct: 103 IQEQTNLPFASKVDGTXHACGHDFHTASIIGTAXLLNQRRAELKGTVRFIFQPAEEIAAG 162
Query: 68 AKDMIQEGVLENVEAIFGLHLVHKYPTGVVASRPGDFLAGCGSFKAKISGKGGHAAIPQH 127
A+ +++ GVL V AIFG H P G + + G A F+ I GKGGHA+IP +
Sbjct: 163 ARKVLEAGVLNGVSAIFGXHNKPDLPVGTIGVKEGPLXASVDRFEIVIKGKGGHASIPNN 222
Query: 128 CIDPILAVSSSVISLQNIVSREIDPLDSQVVSVAMINGGSSYNMIPDSATVAGTFRAFNK 187
IDPI A + LQ++VSR I L + VVS+ + G+S+N+IPD A GT R F K
Sbjct: 223 SIDPIAAAGQIISGLQSVVSRNISSLQNAVVSITRVQAGTSWNVIPDQAEXEGTVRTFQK 282
Query: 188 KRFNALRERIEEIIKGQAAVHRCSAEVDFSGREHPTLPPTMNDVRIYQHVRRVTAEILGE 247
+ A+ E + +G AA + AE + P LP ND A LG
Sbjct: 283 EARQAVPEHXRRVAEGIAAGYGAQAEFKW----FPYLPSVQNDGTFLNAASEAAAR-LGY 337
Query: 248 ENVKLAPIFTGSEDFAFFLDEIPGSFLLLGMLNDSVGSLYPLHSPYFTIDEHVLPIGAVI 307
+ V A G EDFA + ++IPG F+ G H P FT+DE L + +
Sbjct: 338 QTVH-AEQSPGGEDFALYQEKIPGFFVWXG-----TNGTEEWHHPAFTLDEEALTVASQY 391
Query: 308 HAAFA 312
A A
Sbjct: 392 FAELA 396
>pdb|4EWT|A Chain A, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|C Chain C, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|D Chain D, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|B Chain B, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
Length = 392
Score = 174 bits (440), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 102/289 (35%), Positives = 156/289 (53%), Gaps = 6/289 (2%)
Query: 18 SKIDGKMHACGHDAHVAMLLGAAKILQEMRETLKGTVVLIFQPAEERGTG-AKDMIQEGV 76
S+ G MHACGHDAH A +L A+ L EM+++ G VV+I QPAEE G AK MI+ GV
Sbjct: 94 SQNKGVMHACGHDAHTAYMLVLAETLAEMKDSFTGKVVVIHQPAEEVPPGGAKTMIENGV 153
Query: 77 LENVEAIFGLHLVHKYPTGVVASRPGDFLAGCGSFKAKISGKGGHAAIPQHCIDPILAVS 136
L+ V+ + G+H++ TG V RPG G FK K+ GKGGH + P D I+A S
Sbjct: 154 LDGVDHVLGVHVMSTMKTGKVYYRPGYVQTGRAFFKLKVQGKGGHGSSPHMANDAIVAGS 213
Query: 137 SSVISLQNIVSREIDPLDSQVVSVAMINGGSSYNMIPDSATVAGTFRAFNKKRFNALRER 196
V +LQ +VSR + P ++ VV++ +G +N+I D + G R + +
Sbjct: 214 YFVTALQTVVSRRLSPFETGVVTIGSFDGKGQFNVIKDVVEIEGDVRGLTDATKATIEKE 273
Query: 197 IEEIIKGQAAVHRCSAEVDFSGREHPTLPPTMNDVRIYQHVRRVTAEILGEENVKLAPIF 256
I+ + KG ++ + ++++ ++P L ND ++V + E + V++
Sbjct: 274 IKRLSKGLEDMYGVTCTLEYN-DDYPAL---YNDPEFTEYVAKTLKEANLDFGVEMCEPQ 329
Query: 257 TGSEDFAFFLDEIPGSFLLLGMLNDSVGSLYPLHSPYFTIDEHVLPIGA 305
SEDFA++ E P +F+ G ++ G +YP H P F I E L I A
Sbjct: 330 PPSEDFAYYAKERPSAFIYTGAAVEN-GEIYPHHHPKFNISEKSLLISA 377
>pdb|3IO1|A Chain A, Crystal Structure Of Aminobenzoyl-Glutamate Utilization
Protein From Klebsiella Pneumoniae
pdb|3IO1|B Chain B, Crystal Structure Of Aminobenzoyl-Glutamate Utilization
Protein From Klebsiella Pneumoniae
Length = 445
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 94/198 (47%), Gaps = 5/198 (2%)
Query: 22 GKMHACGHDAHVAMLLGAAKILQEMRETLKGTVVLIFQPAEERGTGAKDMIQEGVLENVE 81
G HACGHD H A+ LG A +L++ L G + LIFQPAEE GA+ + GV+++V+
Sbjct: 144 GXXHACGHDGHTAIGLGLAHVLKQYAAQLNGVIKLIFQPAEEGTRGARAXVAAGVVDDVD 203
Query: 82 AIFGLHLVHKYPTGVVASRPGDFLAGCGSFKAKISGKGGHA-AIPQHCIDPILAVSSSVI 140
+H+ P G V GD F + SG HA P+ + +LA + + +
Sbjct: 204 YFTAIHIGTGVPAGTVVC-GGDNFXATTKFDVQFSGVAAHAGGKPEDGRNALLAAAQAAL 262
Query: 141 SLQNIVSREIDPLDSQVVSVAMINGGSSYNMIPDSATVAGTFRAFNKKRFNALRERIEEI 200
L I + V+V + G+ N++P SA + R ++ + ER + +
Sbjct: 263 GLHAIPPHSA---GASRVNVGVXQAGTGRNVVPSSALLKVETRGESEAINQYVFERAQHV 319
Query: 201 IKGQAAVHRCSAEVDFSG 218
+ G AA + E+ G
Sbjct: 320 VAGAAAXYEARYELRXXG 337
>pdb|3RAM|A Chain A, Crystal Structure Of Hmra
pdb|3RAM|B Chain B, Crystal Structure Of Hmra
pdb|3RAM|C Chain C, Crystal Structure Of Hmra
pdb|3RAM|D Chain D, Crystal Structure Of Hmra
Length = 394
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 91/200 (45%), Gaps = 22/200 (11%)
Query: 22 GKMHACGHDA-HVAMLLGAAKILQEMRETLKGTVVLIFQPAEE---RGTGAKDMIQEGVL 77
G HACGH+ A +LGA L+++ + + G VV++ PAEE G+ ++ GV+
Sbjct: 88 GLGHACGHNIIGTASVLGAIG-LKQVIDQIGGKVVVLGCPAEEGGENGSAKASYVKAGVI 146
Query: 78 ENVEAIFGLHLVHKYPTGVVASRPGDFLAGCGSFKAKISGKGGHAAIPQ----HCIDPIL 133
+ ++ +H G + D LA K GK HA+ + +D +
Sbjct: 147 DQIDIALXIH------PGNETYKTIDTLA-VDVLDVKFYGKSAHASENADEALNALDAXI 199
Query: 134 AVSSSVISLQNIVSREIDPLDSQVVSVAMINGGSSYNMIPDSATVAGTFRAFNKKRFNAL 193
+ + V L+ + ++ Q V +++GG + N+IPD RA +K + L
Sbjct: 200 SYFNGVAQLRQHIKKD------QRVHGVILDGGKAANIIPDYTHARFYTRAXTRKELDIL 253
Query: 194 RERIEEIIKGQAAVHRCSAE 213
E++ +I +G A C E
Sbjct: 254 TEKVNQIARGAAIQTGCDYE 273
>pdb|1CG2|A Chain A, Carboxypeptidase G2
pdb|1CG2|B Chain B, Carboxypeptidase G2
pdb|1CG2|C Chain C, Carboxypeptidase G2
pdb|1CG2|D Chain D, Carboxypeptidase G2
Length = 393
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 82/168 (48%), Gaps = 12/168 (7%)
Query: 34 AMLLGAAKILQEMRETLKGTVVLIFQPAEERGT-GAKDMIQEGVLENVEAIFGLHLVHKY 92
A++L K+L+E GT+ ++F EE+G+ G++D+IQE EA +++
Sbjct: 125 AVILHTLKLLKEYGVRDYGTITVLFNTDEEKGSFGSRDLIQE------EAKLADYVLSFE 178
Query: 93 PTGVVASRPGDFLAGCGSFKAKISGKGGHA-AIPQHCIDPILAVSSSVISLQNIVSREID 151
PT + +G + I+GK HA A P+ ++ ++ S V+ NI + +
Sbjct: 179 PTSAGDEKLSLGTSGIAYVQVNITGKASHAGAAPELGVNALVEASDLVLRTMNIDDKAKN 238
Query: 152 PLDSQVVSVAMINGGSSYNMIPDSATVAGTFRAFNKKRFNALRERIEE 199
+ ++ A G+ N+IP SAT+ R + F+A + +EE
Sbjct: 239 LRFNWTIAKA----GNVSNIIPASATLNADVRYARNEDFDAAMKTLEE 282
>pdb|2RB7|A Chain A, Crystal Structure Of Co-Catalytic Metallopeptidase
(Yp_387682.1) From Desulfovibrio Desulfuricans G20 At
1.60 A Resolution
pdb|2RB7|B Chain B, Crystal Structure Of Co-Catalytic Metallopeptidase
(Yp_387682.1) From Desulfovibrio Desulfuricans G20 At
1.60 A Resolution
Length = 364
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 42/103 (40%)
Query: 107 GCGSFKAKISGKGGHAAIPQHCIDPILAVSSSVISLQNIVSREIDPLDSQVVSVAMINGG 166
G K +GK H A P ++ + + L+ + + E + + V++ I G
Sbjct: 176 GIIDIKLTCTGKAAHGARPWXGVNAVDLLXEDYTRLKTLFAEENEDHWHRTVNLGRIRAG 235
Query: 167 SSYNMIPDSATVAGTFRAFNKKRFNALRERIEEIIKGQAAVHR 209
S N +PD A R AL ++I + + G ++ R
Sbjct: 236 ESTNKVPDVAEGWFNIRVTEHDDPGALIDKIRKTVSGTVSIVR 278
>pdb|1VGY|A Chain A, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
pdb|1VGY|B Chain B, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
Length = 393
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 115 ISGKGGHAAIPQHCIDPILAVSSSVISL-QNIVSREIDPLDSQVVSVAMINGGS-SYNMI 172
+ GK GH A P I+P+ + +++ L Q + + ++ INGG+ + N+I
Sbjct: 191 VKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDEGNEYFPPTSFQISNINGGTGATNVI 250
Query: 173 PDSATVAGTFRAFNKKRFNALRERIEEII 201
P V FR + L++R+ I+
Sbjct: 251 PGELNVKFNFRFSTESTEAGLKQRVHAIL 279
>pdb|3RZA|A Chain A, Crystal Structure Of A Tripeptidase (Sav1512) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 2.10 A
Resolution
pdb|3RZA|B Chain B, Crystal Structure Of A Tripeptidase (Sav1512) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 2.10 A
Resolution
Length = 396
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 90/212 (42%), Gaps = 21/212 (9%)
Query: 34 AMLLGAAKILQEMRETL--KGTVVLIFQPAEERG-TGAKDMIQEGVLENVEAIFGLHLVH 90
A L ++LQ ++E G + + EE G GAK++ E ++A FG +
Sbjct: 132 AGLAAXLEVLQVIKEQQIPHGQIQFVITVGEESGLIGAKELNSE----LLDADFGYAIDA 187
Query: 91 KYPTGV-VASRPGDFLAGCGSFKAKISGKGGHAAIPQHCIDPILAVSSSVISLQNIVSRE 149
G V P L AKI GK HA+ P+ + I +++ IS + +
Sbjct: 188 SADVGTTVVGAPTQXL-----ISAKIIGKTAHASTPKEGVSAI-NIAAKAISRXKL--GQ 239
Query: 150 IDPLDSQVVSVAMINGGSSYNMIPDSATVAGTFRAFNKKRFNALRERIEEIIKGQAAVHR 209
+D + + ++ +GGS+ N++ D + R+ + +R + ++ + A+
Sbjct: 240 VDEITT--ANIGKFHGGSATNIVADEVILEAEARSHDPERIKTQVKHXTDVFETTASELG 297
Query: 210 CSAEVDFSGREHPTLPPTMND--VRIYQHVRR 239
AEV + +P N+ V+I Q R
Sbjct: 298 GKAEVTVE-QSYPGFKINDNEAVVKIAQESAR 328
>pdb|3CT9|A Chain A, Crystal Structure Of A Putative Zinc Peptidase
(Np_812461.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 2.31 A Resolution
pdb|3CT9|B Chain B, Crystal Structure Of A Putative Zinc Peptidase
(Np_812461.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 2.31 A Resolution
Length = 356
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 79/182 (43%), Gaps = 13/182 (7%)
Query: 21 DGKMHACGHDAHVAMLLGAAKILQEMRETLKGTVVLIFQPAEERGTGAKDMIQEGVLENV 80
+GK++ G + A ++ ++ ++ T + ++ EE +G + + E VL +
Sbjct: 95 NGKLYGLGSNDAGASVVSLLQVFLQLCRTSQNYNLIYLASCEEEVSGKEGI--ESVLPGL 152
Query: 81 EAIFGLHLVHKYPTGVVASRPGDFLAGCGSFKAKISGKGGHAAIPQHCIDPILAVSSSVI 140
+ +V + PT +P G +GK GHAA + + I V + +
Sbjct: 153 PPV-SFAIVGE-PT---EXQPAIAEKGLXVLDVTATGKAGHAARDEG-DNAIYKVLNDIA 206
Query: 141 SLQNIVSREIDPLDSQV-VSVAMINGGSSYNMIPDSATVAGTFRA----FNKKRFNALRE 195
++ + PL V SV +IN G+ +N++PD T R+ N+ F +R+
Sbjct: 207 WFRDYRFEKESPLLGPVKXSVTVINAGTQHNVVPDKCTFVVDIRSNELYSNEDLFAEIRK 266
Query: 196 RI 197
I
Sbjct: 267 HI 268
>pdb|3V6F|A Chain A, Crystal Structure Of An Anti-hbv E-antigen Monoclonal Fab
Fragment (e6), Unbound
pdb|3V6F|C Chain C, Crystal Structure Of An Anti-hbv E-antigen Monoclonal Fab
Fragment (e6), Unbound
pdb|3V6F|E Chain E, Crystal Structure Of An Anti-hbv E-antigen Monoclonal Fab
Fragment (e6), Unbound
pdb|3V6F|H Chain H, Crystal Structure Of An Anti-hbv E-antigen Monoclonal Fab
Fragment (e6), Unbound
pdb|3V6Z|A Chain A, Crystal Structure Of Hepatitis B Virus E-antigen
pdb|3V6Z|C Chain C, Crystal Structure Of Hepatitis B Virus E-antigen
Length = 224
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 154 DSQVVSVAMINGGSSYNMIPDSATVAGTFRAFNKKRFNALRERIEEIIKGQAAVHRCSAE 213
D ++ VA I+ G +Y PD TV G F N L ++ + A++ C+ E
Sbjct: 42 DKRLEWVATISSGGNYIYYPD--TVKGRFTISRDNAKNTLYLQMSSLKSEDTAMYYCTRE 99
Query: 214 VDFSG 218
+SG
Sbjct: 100 GAYSG 104
>pdb|3O6K|H Chain H, Crystal Structure Of Anti-Tat Hiv Fab'11h6h1
pdb|3O6L|H Chain H, Anti-Tat Hiv 11h6h1 Fab' Complexed With A 15-Mer Tat
Peptide
pdb|3O6M|H Chain H, Anti-Tat Hiv 11h6h1 Fab' Complexed With A 9-Mer Tat
Peptide
Length = 219
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 160 VAMINGGSSYNMIPDSATVAGTFRAFNKKRFNALRERIEEIIKGQAAVHRCSAEVDF 216
VA I+ G SY PDS V G F N L ++ + A++ C+ + D+
Sbjct: 48 VASISSGGSYTYYPDS--VKGRFTISRDNARNTLYLQMNSLRSEDTALYYCARDYDY 102
>pdb|3UTZ|B Chain B, Endogenous-Like Inhibitory Antibodies Targeting Activated
Metalloproteinase Motifs Show Therapeutic Potential
pdb|3UTZ|C Chain C, Endogenous-Like Inhibitory Antibodies Targeting Activated
Metalloproteinase Motifs Show Therapeutic Potential
pdb|3UTZ|F Chain F, Endogenous-Like Inhibitory Antibodies Targeting Activated
Metalloproteinase Motifs Show Therapeutic Potential
Length = 225
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 160 VAMINGGSSYNMIPDSATVAGTFRAFNKKRFNALRERIEEIIKGQAAVHRCS 211
VA I+ G SY PDS V G F N L ++ + G A++ C+
Sbjct: 48 VATISSGGSYTYYPDS--VKGRFTISKDNARNTLYLQMSSLRSGDTALYYCT 97
>pdb|3IZS|H Chain H, Localization Of The Large Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O58|H Chain H, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O5H|H Chain H, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5E|G Chain G, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome A
pdb|3U5I|G Chain G, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome B
pdb|4B6A|G Chain G, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex
With Arx1 And Rei1
Length = 256
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 174 DSATVAGTFRAFNKKRFNALRERIEEIIKGQAAVHRCSAEVDFSGREH 221
D T A TF+ FNK R E+ E + K AAV ++ D S + +
Sbjct: 83 DRNTAAETFKLFNKYRPETAAEKKERLTKEAAAVAEGKSKQDASPKPY 130
>pdb|3EXE|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|J Chain J, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|L Chain L, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|N Chain N, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|P Chain P, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|R Chain R, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|T Chain T, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|V Chain V, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|X Chain X, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Z Chain Z, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|2 Chain 2, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|4 Chain 4, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|6 Chain 6, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXI|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex With
The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot
Be Modeled Into The Electron Density
Length = 329
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 14/95 (14%)
Query: 76 VLENVEAIFGLHLVHKYPTGVVASRPGDFLAGCGSFKAKISGKGGHAAIPQH------CI 129
VLEN E ++G+ ++P ++ DFL G KAKI +G H + H C+
Sbjct: 169 VLEN-ELMYGVPF--EFPP---EAQSKDFLIPIG--KAKIERQGTHITVVSHSRPVGHCL 220
Query: 130 DPILAVSSSVISLQNIVSREIDPLDSQVVSVAMIN 164
+ +S + + I R I P+D + + +++
Sbjct: 221 EAAAVLSKEGVECEVINMRTIRPMDMETIEASVMK 255
>pdb|2OZL|B Chain B, Human Pyruvate Dehydrogenase S264e Variant
pdb|2OZL|D Chain D, Human Pyruvate Dehydrogenase S264e Variant
Length = 341
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 14/95 (14%)
Query: 76 VLENVEAIFGLHLVHKYPTGVVASRPGDFLAGCGSFKAKISGKGGHAAIPQH------CI 129
VLEN E ++G+ ++P ++ DFL G KAKI +G H + H C+
Sbjct: 181 VLEN-ELMYGVPF--EFPP---EAQSKDFLIPIG--KAKIERQGTHITVVSHSRPVGHCL 232
Query: 130 DPILAVSSSVISLQNIVSREIDPLDSQVVSVAMIN 164
+ +S + + I R I P+D + + +++
Sbjct: 233 EAAAVLSKEGVECEVINMRTIRPMDMETIEASVMK 267
>pdb|2AI0|H Chain H, Anti-Cocaine Antibody 7.5.21, Crystal Form Iii
pdb|2AI0|I Chain I, Anti-Cocaine Antibody 7.5.21, Crystal Form Iii
pdb|2AI0|J Chain J, Anti-Cocaine Antibody 7.5.21, Crystal Form Iii
pdb|2AI0|K Chain K, Anti-Cocaine Antibody 7.5.21, Crystal Form Iii
Length = 224
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 160 VAMINGGSSYNMIPDSATVAGTFRAFNKKRFNALRERIEEIIKGQAAVHRCSAEVDFSGR 219
VA I+G S Y PDS V G F N L ++ + A++ C+ D+ G+
Sbjct: 48 VAAISGNSLYTSYPDS--VKGRFTISRDNAKNNLYLQMSSLRSEDTALYFCARHDDYYGK 105
Query: 220 E 220
Sbjct: 106 S 106
>pdb|2A1W|H Chain H, Anti-Cocaine Antibody 7.5.21, Crystal Form I
pdb|2A1W|I Chain I, Anti-Cocaine Antibody 7.5.21, Crystal Form I
Length = 225
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 160 VAMINGGSSYNMIPDSATVAGTFRAFNKKRFNALRERIEEIIKGQAAVHRCSAEVDFSGR 219
VA I+G S Y PDS V G F N L ++ + A++ C+ D+ G+
Sbjct: 48 VAAISGNSLYTSYPDS--VKGRFTISRDNAKNNLYLQMSSLRSEDTALYFCARHDDYYGK 105
Query: 220 E 220
Sbjct: 106 S 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,538,920
Number of Sequences: 62578
Number of extensions: 384438
Number of successful extensions: 784
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 768
Number of HSP's gapped (non-prelim): 21
length of query: 323
length of database: 14,973,337
effective HSP length: 99
effective length of query: 224
effective length of database: 8,778,115
effective search space: 1966297760
effective search space used: 1966297760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)