BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020659
(323 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/285 (33%), Positives = 140/285 (49%), Gaps = 16/285 (5%)
Query: 43 WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGC-VYATGLNDFG 101
WG G+ G+LG G E R P SA + H + ++ CG HT+ +++G VY+ G DFG
Sbjct: 40 WGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFG 99
Query: 102 QLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKK 160
+LG N PL I L + QI+ G H A+T++GE+ WG+N NGQLGLG
Sbjct: 100 RLG-HGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDT 158
Query: 161 AAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF 220
+ +P K++ GI K A G E + AVT G + WG G G LG G
Sbjct: 159 EDSL--VPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDR------ 210
Query: 221 LRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARR 280
T P + G K+ + A G+ H+ + +G +Y +G ++ +
Sbjct: 211 ---TDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLI 267
Query: 281 PSLISKLPYS--EEVVCGGYHTCVLTSGGELYTWGSNENGCLGIG 323
P + L S ++ G HT LTS G+LY WG N+ G +G+G
Sbjct: 268 PHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVG 312
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 141/286 (49%), Gaps = 19/286 (6%)
Query: 43 WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQ 102
WG GD+GRLG G+ + P+ A +K +ACG +H L +T G V + G N GQ
Sbjct: 93 WGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQ 152
Query: 103 LGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKA 161
LG+ + SL P +I + + ++ G H++A+T DG+LY WG G LGLG +
Sbjct: 153 LGLGDTED-SLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRT 211
Query: 162 AKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFL 221
++ +P +V G A G+ +++V+ G + ++G G+LGHG L
Sbjct: 212 DRL--VPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHL--- 266
Query: 222 RSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRP 281
P ++ L + + G+ H+ + +G++Y +G ++ GN+ +
Sbjct: 267 ------IPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGV--GNNLDQC 318
Query: 282 SLIS-KLPYSEEVV---CGGYHTCVLTSGGELYTWGSNENGCLGIG 323
S + + P ++VV CG HT +T ++ WG NG LGIG
Sbjct: 319 SPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIG 364
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 107/213 (50%), Gaps = 16/213 (7%)
Query: 43 WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQ 102
WG G YG LGLG R P ++ + +ACG HT+ ++ +G +Y G + +GQ
Sbjct: 197 WGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQ 256
Query: 103 LGISENIGYSLEPLRISGLKKEVV-QISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKA 161
LG + + L P ++ L + QIS G+ H+ A+T DG+LY WG N GQ+G+G
Sbjct: 257 LGHGD-LEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNL 315
Query: 162 AKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFL 221
+ P+ + + Q + G+ ++AVT V +WG G +G+LG G+
Sbjct: 316 DQCSPVQVRFPDDQKVV--QVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGE-------- 365
Query: 222 RSTSEYTPRLIKELEGVKVKIAAAGFLHSACID 254
S P++I E + V A+ + S+ ID
Sbjct: 366 -SVDRNFPKII---EALSVDGASGQHIESSNID 394
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 96/210 (45%), Gaps = 14/210 (6%)
Query: 117 RISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSG 176
++ ++V+ IS G HS A+ + WG+ +GQLG G A+ P PT++ L G
Sbjct: 10 EVTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGD--AEDRPSPTQLSALDG 67
Query: 177 IFTKQAALGFEQSVAVTGGG-KVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKEL 235
G + +VA + G +V SWG G GRLGHG S + +TP IK L
Sbjct: 68 HQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDL---------FTPLPIKAL 118
Query: 236 EGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLP--YSEEV 293
G+++K A G H + G V +G ++ + + P I + V
Sbjct: 119 HGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMV 178
Query: 294 VCGGYHTCVLTSGGELYTWGSNENGCLGIG 323
G HT +T G+LY WG G LG+G
Sbjct: 179 AAGAEHTAAVTEDGDLYGWGWGRYGNLGLG 208
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/285 (33%), Positives = 140/285 (49%), Gaps = 16/285 (5%)
Query: 43 WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGC-VYATGLNDFG 101
WG G+ G+LG G E R P SA + H + ++ CG HT+ +++G VY+ G DFG
Sbjct: 28 WGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFG 87
Query: 102 QLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKK 160
+LG N PL I L + QI+ G H A+T++GE+ WG+N NGQLGLG
Sbjct: 88 RLG-HGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDT 146
Query: 161 AAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF 220
+ +P K++ GI K A G E + AVT G + WG G G LG G
Sbjct: 147 EDSL--VPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDR------ 198
Query: 221 LRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARR 280
T P + G K+ + A G+ H+ + +G +Y +G ++ +
Sbjct: 199 ---TDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLI 255
Query: 281 PSLISKLPYS--EEVVCGGYHTCVLTSGGELYTWGSNENGCLGIG 323
P + L S ++ G HT LTS G+LY WG N+ G +G+G
Sbjct: 256 PHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVG 300
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 141/286 (49%), Gaps = 19/286 (6%)
Query: 43 WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQ 102
WG GD+GRLG G+ + P+ A +K +ACG +H L +T G V + G N GQ
Sbjct: 81 WGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQ 140
Query: 103 LGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKA 161
LG+ + SL P +I + + ++ G H++A+T DG+LY WG G LGLG +
Sbjct: 141 LGLGDTED-SLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRT 199
Query: 162 AKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFL 221
++ +P +V G A G+ +++V+ G + ++G G+LGHG L
Sbjct: 200 DRL--VPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHL--- 254
Query: 222 RSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRP 281
P ++ L + + G+ H+ + +G++Y +G ++ GN+ +
Sbjct: 255 ------IPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGV--GNNLDQC 306
Query: 282 SLIS-KLPYSEEVV---CGGYHTCVLTSGGELYTWGSNENGCLGIG 323
S + + P ++VV CG HT +T ++ WG NG LGIG
Sbjct: 307 SPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIG 352
Score = 97.4 bits (241), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 99/194 (51%), Gaps = 13/194 (6%)
Query: 43 WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQ 102
WG G YG LGLG R P ++ + +ACG HT+ ++ +G +Y G + +GQ
Sbjct: 185 WGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQ 244
Query: 103 LGISENIGYSLEPLRISGLKKEVV-QISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKA 161
LG + + L P ++ L + QIS G+ H+ A+T DG+LY WG N GQ+G+G
Sbjct: 245 LGHGD-LEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNL 303
Query: 162 AKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFL 221
+ P+ + + Q + G+ ++AVT V +WG G +G+LG G+
Sbjct: 304 DQCSPVQVRFPDDQKVV--QVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGE-------- 353
Query: 222 RSTSEYTPRLIKEL 235
S P++I+ L
Sbjct: 354 -SVDRNFPKIIEAL 366
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 94/204 (46%), Gaps = 14/204 (6%)
Query: 123 KEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQA 182
++V+ IS G HS A+ + WG+ +GQLG G A+ P PT++ L G
Sbjct: 4 RKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGD--AEDRPSPTQLSALDGHQIVSV 61
Query: 183 ALGFEQSVAVTGGG-KVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVK 241
G + +VA + G +V SWG G GRLGHG S + +TP IK L G+++K
Sbjct: 62 TCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDL---------FTPLPIKALHGIRIK 112
Query: 242 IAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLP--YSEEVVCGGYH 299
A G H + G V +G ++ + + P I + V G H
Sbjct: 113 QIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEH 172
Query: 300 TCVLTSGGELYTWGSNENGCLGIG 323
T +T G+LY WG G LG+G
Sbjct: 173 TAAVTEDGDLYGWGWGRYGNLGLG 196
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 43 WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQ 102
WG +G++G+G+ + PV + + ++CG HTL +TE V+A G GQ
Sbjct: 289 WGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQ 348
Query: 103 LGISENIGYS----LEPLRISG 120
LGI E++ + +E L + G
Sbjct: 349 LGIGESVDRNFPKIIEALSVDG 370
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 142 bits (358), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/285 (33%), Positives = 140/285 (49%), Gaps = 16/285 (5%)
Query: 43 WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGC-VYATGLNDFG 101
WG G+ G+LG G E R P SA + H + ++ CG HT+ +++G VY+ G DFG
Sbjct: 28 WGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFG 87
Query: 102 QLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKK 160
+LG N PL I L + QI+ G H A+T++GE+ WG+N NGQLGLG
Sbjct: 88 RLG-HGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDT 146
Query: 161 AAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF 220
+ +P K++ GI K A G E + AVT G + WG G G LG G
Sbjct: 147 EDSL--VPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDR------ 198
Query: 221 LRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARR 280
T P + G K+ + A G+ H+ + +G +Y +G ++ +
Sbjct: 199 ---TDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLI 255
Query: 281 PSLISKLPYS--EEVVCGGYHTCVLTSGGELYTWGSNENGCLGIG 323
P + L S ++ G HT LTS G+LY WG N+ G +G+G
Sbjct: 256 PHKLEALSNSFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGVG 300
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 141/286 (49%), Gaps = 19/286 (6%)
Query: 43 WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQ 102
WG GD+GRLG G+ + P+ A +K +ACG +H L +T G V + G N GQ
Sbjct: 81 WGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQ 140
Query: 103 LGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKA 161
LG+ + SL P +I + + ++ G H++A+T DG+LY WG G LGLG +
Sbjct: 141 LGLGDTED-SLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRT 199
Query: 162 AKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFL 221
++ +P +V G A G+ +++V+ G + ++G G+LGHG L
Sbjct: 200 DRL--VPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHL--- 254
Query: 222 RSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRP 281
P ++ L + + GF H+ + +G++Y +G ++ GN+ +
Sbjct: 255 ------IPHKLEALSNSFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGV--GNNLDQC 306
Query: 282 SLIS-KLPYSEEVV---CGGYHTCVLTSGGELYTWGSNENGCLGIG 323
S + + P ++VV CG HT +T ++ WG NG LGIG
Sbjct: 307 SPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIG 352
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 99/194 (51%), Gaps = 13/194 (6%)
Query: 43 WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQ 102
WG G YG LGLG R P ++ + +ACG HT+ ++ +G +Y G + +GQ
Sbjct: 185 WGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQ 244
Query: 103 LGISENIGYSLEPLRISGLKKEVV-QISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKA 161
LG + + L P ++ L + QIS G+ H+ A+T DG+LY WG N GQ+G+G
Sbjct: 245 LGHGD-LEDHLIPHKLEALSNSFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNL 303
Query: 162 AKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFL 221
+ P+ + + Q + G+ ++AVT V +WG G +G+LG G+
Sbjct: 304 DQCSPVQVRFPDDQKVV--QVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGE-------- 353
Query: 222 RSTSEYTPRLIKEL 235
S P++I+ L
Sbjct: 354 -SVDRNFPKIIEAL 366
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 94/204 (46%), Gaps = 14/204 (6%)
Query: 123 KEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQA 182
++V+ IS G HS A+ + WG+ +GQLG G A+ P PT++ L G
Sbjct: 4 RKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGD--AEDRPSPTQLSALDGHQIVSV 61
Query: 183 ALGFEQSVAVTGGG-KVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVK 241
G + +VA + G +V SWG G GRLGHG S + +TP IK L G+++K
Sbjct: 62 TCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDL---------FTPLPIKALHGIRIK 112
Query: 242 IAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLP--YSEEVVCGGYH 299
A G H + G V +G ++ + + P I + V G H
Sbjct: 113 QIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEH 172
Query: 300 TCVLTSGGELYTWGSNENGCLGIG 323
T +T G+LY WG G LG+G
Sbjct: 173 TAAVTEDGDLYGWGWGRYGNLGLG 196
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 43 WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQ 102
WG +G++G+G+ + PV + + ++CG HTL +TE V+A G GQ
Sbjct: 289 WGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQ 348
Query: 103 LGISENIGYS----LEPLRISG 120
LGI E++ + +E L + G
Sbjct: 349 LGIGESVDRNFPKIIEALSVDG 370
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 140 bits (354), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 96/285 (33%), Positives = 137/285 (48%), Gaps = 16/285 (5%)
Query: 43 WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGC-VYATGLNDFG 101
WG G+ G+LG G E R P SA + H + ++ CG HT+ +++G VY+ G DFG
Sbjct: 30 WGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGXEVYSWGWGDFG 89
Query: 102 QLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKK 160
+LG N PL I L + QI+ G H A+T +GE+ WG+N NGQLGLG
Sbjct: 90 RLG-HGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTXEGEVQSWGRNQNGQLGLGDT 148
Query: 161 AAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF 220
+ +P K++ GI K A G E + AVT G + WG G G LG G
Sbjct: 149 EDSL--VPQKIQAFEGIRIKXVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDR------ 200
Query: 221 LRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARR 280
T P + G K A G+ H+ + +G +Y +G ++ +
Sbjct: 201 ---TDRLVPERVTSTGGEKXSXVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLI 257
Query: 281 PSLISKLPYS--EEVVCGGYHTCVLTSGGELYTWGSNENGCLGIG 323
P + L S ++ G HT LTS G+LY WG N+ G +G+G
Sbjct: 258 PHKLEALSNSFISQISGGARHTXALTSDGKLYGWGWNKFGQVGVG 302
Score = 120 bits (302), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 140/286 (48%), Gaps = 19/286 (6%)
Query: 43 WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQ 102
WG GD+GRLG G+ + P+ A +K +ACG +H L +T G V + G N GQ
Sbjct: 83 WGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTXEGEVQSWGRNQNGQ 142
Query: 103 LGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKA 161
LG+ + SL P +I + + ++ G H++A+T DG+LY WG G LGLG +
Sbjct: 143 LGLGDTED-SLVPQKIQAFEGIRIKXVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRT 201
Query: 162 AKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFL 221
++ +P +V G A G+ +++V+ G + ++G G+LGHG L
Sbjct: 202 DRL--VPERVTSTGGEKXSXVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHL--- 256
Query: 222 RSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRP 281
P ++ L + + G H+ + +G++Y +G ++ GN+ +
Sbjct: 257 ------IPHKLEALSNSFISQISGGARHTXALTSDGKLYGWGWNKFGQVGV--GNNLDQC 308
Query: 282 SLIS-KLPYSEEVV---CGGYHTCVLTSGGELYTWGSNENGCLGIG 323
S + + P ++VV CG HT +T ++ WG NG LGIG
Sbjct: 309 SPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIG 354
Score = 94.7 bits (234), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 97/194 (50%), Gaps = 13/194 (6%)
Query: 43 WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQ 102
WG G YG LGLG R P ++ +ACG HT+ ++ +G +Y G + +GQ
Sbjct: 187 WGWGRYGNLGLGDRTDRLVPERVTSTGGEKXSXVACGWRHTISVSYSGALYTYGWSKYGQ 246
Query: 103 LGISENIGYSLEPLRISGLKKEVV-QISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKA 161
LG + + L P ++ L + QIS G H+ A+T DG+LY WG N GQ+G+G
Sbjct: 247 LGHGD-LEDHLIPHKLEALSNSFISQISGGARHTXALTSDGKLYGWGWNKFGQVGVGNNL 305
Query: 162 AKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFL 221
+ P+ + + Q + G+ ++AVT V +WG G +G+LG G+
Sbjct: 306 DQCSPVQVRFPDDQKVV--QVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGE-------- 355
Query: 222 RSTSEYTPRLIKEL 235
S P++I+ L
Sbjct: 356 -SVDRNFPKIIEAL 368
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 96/209 (45%), Gaps = 14/209 (6%)
Query: 118 ISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGI 177
++ ++V+ IS G HS A+ + WG+ +GQLG G A+ P PT++ L G
Sbjct: 1 VTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGD--AEDRPSPTQLSALDGH 58
Query: 178 FTKQAALGFEQSVAVT-GGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELE 236
G + +VA + G +V SWG G GRLGHG S + +TP IK L
Sbjct: 59 QIVSVTCGADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDL---------FTPLPIKALH 109
Query: 237 GVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLP--YSEEVV 294
G+++K A G H + G V +G ++ + + P I + V
Sbjct: 110 GIRIKQIACGDSHCLAVTXEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVA 169
Query: 295 CGGYHTCVLTSGGELYTWGSNENGCLGIG 323
G HT +T G+LY WG G LG+G
Sbjct: 170 AGAEHTAAVTEDGDLYGWGWGRYGNLGLG 198
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 43 WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQ 102
WG +G++G+G+ + PV + + ++CG HTL +TE V+A G GQ
Sbjct: 291 WGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQ 350
Query: 103 LGISENIGYS----LEPLRISG 120
LGI E++ + +E L + G
Sbjct: 351 LGIGESVDRNFPKIIEALSVDG 372
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 129/263 (49%), Gaps = 17/263 (6%)
Query: 43 WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQ 102
WG + G+LG G+ RP V + + +A GGAH+ +T G +Y G +G+
Sbjct: 131 WGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGR 190
Query: 103 LGISENIGYSLEPLRISGLK-KEVVQIS--TGYHHSSAITVDGELYMWGKNSNGQLGLGK 159
LG S++ L+P + L+ VV I+ +G + +T D ++ WG G+LG G
Sbjct: 191 LGHSDSED-QLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRG- 248
Query: 160 KAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILG 219
+ +P K++ L+G+ + G + SVA+T G V +WG G RLGHG + +
Sbjct: 249 -GSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHV-- 305
Query: 220 FLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHAR 279
PR ++ L+G KV A G LH C E+G VY +GD ++ N +
Sbjct: 306 -------RRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQ 358
Query: 280 RPSLISKLPYSE--EVVCGGYHT 300
RP L++ L + V CG HT
Sbjct: 359 RPRLVAALQGKKVNRVACGSAHT 381
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/274 (31%), Positives = 121/274 (44%), Gaps = 19/274 (6%)
Query: 57 ESRWRPVVCSAFEKHSLKALAC--GGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLE 114
ES P + + + +K +A GG H L L+ G VY+ G + G+LG N
Sbjct: 91 ESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHG-NRSPCDR 149
Query: 115 PLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVEC 173
P I L+ EVV ++ G HS+ +T G+LY WGK G+LG ++ P VE
Sbjct: 150 PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKP--KLVEA 207
Query: 174 LSG--IFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRL 231
L G + G Q++ +T V SWG G G+LG G S P
Sbjct: 208 LQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGG---------SDGCKVPMK 258
Query: 232 IKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSE 291
I L G+ V G S + ++G VY +G ++ +H RRP + L +
Sbjct: 259 IDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKK 318
Query: 292 --EVVCGGYHTCVLTSGGELYTWGSNENGCLGIG 323
+ G H T GE+YTWG N+ G LG G
Sbjct: 319 VIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG 352
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 136/291 (46%), Gaps = 25/291 (8%)
Query: 43 WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALA-CGGAHTLF-LTETGCVYATGLNDF 100
WG+ G+LG P C A +L+ + GG TLF +T G +YATG
Sbjct: 25 WGHNHRGQLGGIEGAKVKVPTPCEALA--TLRPVQLIGGEQTLFAVTADGKLYATGYGAG 82
Query: 101 GQLGISENIGYS----LEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLG 156
G+LGI S LE ++ +KK V +++G H A++ +GE+Y WG+ +G+LG
Sbjct: 83 GRLGIGGTESVSTPTLLESIQHVFIKK--VAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 140
Query: 157 LGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESS 216
G ++ P +E L GI A G S VT G + +WG G GRLGH
Sbjct: 141 HGNRSP--CDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSD--- 195
Query: 217 ILGFLRSTSEYTPRLIKELEGVKVKIAA--AGFLHSACIDENGRVYIFGDRAVDKMLFQE 274
S + P+L++ L+G +V A +G + C+ ++ V+ +GD K+
Sbjct: 196 ------SEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGG 249
Query: 275 GNHARRPSLISKLP--YSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIG 323
+ + P I L +V CG + LT G +YTWG + LG G
Sbjct: 250 SDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHG 300
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 94/187 (50%), Gaps = 21/187 (11%)
Query: 142 GELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAA--LGFEQSV-AVTGGGKV 198
G +Y WG N GQLG G + AKV +PT E L+ T + +G EQ++ AVT GK+
Sbjct: 20 GTIYGWGHNHRGQLG-GIEGAKV-KVPTPCEALA---TLRPVQLIGGEQTLFAVTADGKL 74
Query: 199 LSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAA--AGFLHSACIDEN 256
+ G G GRLG G S+ TP L++ ++ V +K A +G H +
Sbjct: 75 YATGYGAGGRLGIGGTESV---------STPTLLESIQHVFIKKVAVNSGGKHCLALSSE 125
Query: 257 GRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSE--EVVCGGYHTCVLTSGGELYTWGS 314
G VY +G+ K+ + RP +I L E +V GG H+ +T+ G+LYTWG
Sbjct: 126 GEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGK 185
Query: 315 NENGCLG 321
G LG
Sbjct: 186 GRYGRLG 192
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 65/142 (45%), Gaps = 9/142 (6%)
Query: 2 LGRSLTAMTKYYLKQDIKLGSKLGI----CKRWISSTLQRRFAA-LWGNGDYGRLGLGSL 56
LGR + K +K D G LG+ C S L + A WG GDY RLG GS
Sbjct: 245 LGRGGSDGCKVPMKIDSLTG--LGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSD 302
Query: 57 ESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPL 116
+ RP + + A+A G H + TE G VY G ND GQLG P
Sbjct: 303 DHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQ-RPR 361
Query: 117 RISGLK-KEVVQISTGYHHSSA 137
++ L+ K+V +++ G H+ A
Sbjct: 362 LVAALQGKKVNRVACGSAHTLA 383
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/298 (29%), Positives = 145/298 (48%), Gaps = 27/298 (9%)
Query: 44 GNGDYGRLGLG-SLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQ 102
G GD G+LGLG ++ R +P + S E + GG HT+ L+++G VY+ G ND G
Sbjct: 33 GQGDVGQLGLGENVMERKKPALVSIPE--DVVQAEAGGMHTVCLSKSGQVYSFGCNDEGA 90
Query: 103 LGISENI-GYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWG--KNSNGQLGLGK 159
LG ++ G + P ++ L+++VVQ+S G H++A+T DG +++WG +++NG +GL +
Sbjct: 91 LGRDTSVEGSEMVPGKVE-LQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLE 149
Query: 160 KAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILG 219
K + +P +V+ + + A G + V +T G + + G G G+LG E L
Sbjct: 150 PMKKSM-VPVQVQL--DVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPE---LF 203
Query: 220 FLRSTSEYTPRLI---------KELEG-VKVKIAAAGFLHSACIDENGRVYIFGDRAVDK 269
R + RL+ + G V+ + A G + I G VY FG +
Sbjct: 204 ANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQ 263
Query: 270 MLFQEGNHARRPSLISKLPYSEE----VVCGGYHTCVLTSGGELYTWGSNENGCLGIG 323
+ P ++ S + G +HT + S G+ Y+ G E G LG+G
Sbjct: 264 LGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLG 321
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 107/258 (41%), Gaps = 43/258 (16%)
Query: 81 AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITV 140
+H TE G V G D GQLG+ EN+ +P +S + ++VVQ G H+ ++
Sbjct: 18 SHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVS-IPEDVVQAEAGGMHTVCLSK 76
Query: 141 DGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLS 200
G++Y +G N G LG +P KVE + Q + G + A+T G+V
Sbjct: 77 SGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVV--QVSAGDSHTAALTDDGRVFL 134
Query: 201 WGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVY 260
W GS R +G ++G L + + +L+ VK+ A+G H + +G +Y
Sbjct: 135 W---GSFRDNNG----VIGLLEPMKKSMVPVQVQLDVPVVKV-ASGNDHLVMLTADGDLY 186
Query: 261 IFGDRAVDKMLFQEGNHARRPSLISK-----------LPYS--------------EEVVC 295
G ++G R P L + +P ++ C
Sbjct: 187 TLG-------CGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFC 239
Query: 296 GGYHTCVLTSGGELYTWG 313
G Y T ++ G +Y +G
Sbjct: 240 GAYFTFAISHEGHVYGFG 257
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 70/142 (49%), Gaps = 7/142 (4%)
Query: 78 CGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLK---KEVVQISTGYHH 134
CG T ++ G VY GL+++ QLG + P ++ K K V S G HH
Sbjct: 239 CGAYFTFAISHEGHVYGFGLSNYHQLG-TPGTESCFIPQNLTSFKNSTKSWVGFSGGQHH 297
Query: 135 SSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTG 194
+ + +G+ Y G+ G+LGLG+ A+ IPT + L + + A G AVT
Sbjct: 298 TVCMDSEGKAYSLGRAEYGRLGLGE-GAEEKSIPTLISRLPAVSS--VACGASVGYAVTK 354
Query: 195 GGKVLSWGAGGSGRLGHGQESS 216
G+V +WG G + +LG GQ+
Sbjct: 355 DGRVFAWGMGTNYQLGTGQDED 376
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 5/128 (3%)
Query: 43 WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKA---LACGGAHTLFLTETGCVYATGLND 99
+G +Y +LG ES + P ++F K+S K+ + G HT+ + G Y+ G +
Sbjct: 256 FGLSNYHQLGTPGTESCFIPQNLTSF-KNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAE 314
Query: 100 FGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGK 159
+G+LG+ E P IS L V ++ G A+T DG ++ WG +N QLG G+
Sbjct: 315 YGRLGLGEGAEEKSIPTLISRLPA-VSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQ 373
Query: 160 KAAKVIPI 167
P+
Sbjct: 374 DEDAWSPV 381
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 44 GNGDYGRLGLGS-LESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQ 102
G +YGRLGLG E + P + S ++ ++ACG + +T+ G V+A G+ Q
Sbjct: 311 GRAEYGRLGLGEGAEEKSIPTLISRLP--AVSSVACGASVGYAVTKDGRVFAWGMGTNYQ 368
Query: 103 LGISENIGYSLEPLRISGLKKE---VVQISTGYHHSSAITVDGE 143
LG ++ + P+ + G + E V+ +S+G H+ + D E
Sbjct: 369 LGTGQDED-AWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKE 411
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 239 KVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVV---C 295
KVK++ H + E G V G V ++ E R+ + +P E+VV
Sbjct: 14 KVKVS-----HRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP--EDVVQAEA 66
Query: 296 GGYHTCVLTSGGELYTWGSNENGCLG 321
GG HT L+ G++Y++G N+ G LG
Sbjct: 67 GGMHTVCLSKSGQVYSFGCNDEGALG 92
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 37 RRFAALWGNGDYGRLGLGSLESRWRPV--VCSAFEKHSLKALACGGAHTLFLTE 88
R FA WG G +LG G E W PV + E + +++ GG HT+ L +
Sbjct: 357 RVFA--WGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVK 408
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 87/298 (29%), Positives = 145/298 (48%), Gaps = 27/298 (9%)
Query: 44 GNGDYGRLGLG-SLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQ 102
G GD G+LGLG ++ R +P + S E + GG HT+ L+++G VY+ G ND G
Sbjct: 22 GQGDVGQLGLGENVMERKKPALVSIPE--DVVQAEAGGMHTVCLSKSGQVYSFGCNDEGA 79
Query: 103 LGISENI-GYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWG--KNSNGQLGLGK 159
LG ++ G + P ++ L+++VVQ+S G H++A+T DG +++WG +++NG +GL +
Sbjct: 80 LGRDTSVEGSEMVPGKVE-LQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLE 138
Query: 160 KAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILG 219
K + +P +V+ + + A G + V +T G + + G G G+LG E L
Sbjct: 139 PMKKSM-VPVQVQL--DVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPE---LF 192
Query: 220 FLRSTSEYTPRLI---------KELEG-VKVKIAAAGFLHSACIDENGRVYIFGDRAVDK 269
R + RL+ + G V+ + A G + I G VY FG +
Sbjct: 193 ANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQ 252
Query: 270 MLFQEGNHARRPSLISKLPYSEE----VVCGGYHTCVLTSGGELYTWGSNENGCLGIG 323
+ P ++ S + G +HT + S G+ Y+ G E G LG+G
Sbjct: 253 LGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLG 310
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 107/258 (41%), Gaps = 43/258 (16%)
Query: 81 AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITV 140
+H TE G V G D GQLG+ EN+ +P +S + ++VVQ G H+ ++
Sbjct: 7 SHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVS-IPEDVVQAEAGGMHTVCLSK 65
Query: 141 DGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLS 200
G++Y +G N G LG +P KVE + Q + G + A+T G+V
Sbjct: 66 SGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVV--QVSAGDSHTAALTDDGRVFL 123
Query: 201 WGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVY 260
W GS R +G ++G L + + +L+ VK+ A+G H + +G +Y
Sbjct: 124 W---GSFRDNNG----VIGLLEPMKKSMVPVQVQLDVPVVKV-ASGNDHLVMLTADGDLY 175
Query: 261 IFGDRAVDKMLFQEGNHARRPSLISK-----------LPYS--------------EEVVC 295
G ++G R P L + +P ++ C
Sbjct: 176 TLG-------CGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFC 228
Query: 296 GGYHTCVLTSGGELYTWG 313
G Y T ++ G +Y +G
Sbjct: 229 GAYFTFAISHEGHVYGFG 246
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 70/142 (49%), Gaps = 7/142 (4%)
Query: 78 CGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLK---KEVVQISTGYHH 134
CG T ++ G VY GL+++ QLG + P ++ K K V S G HH
Sbjct: 228 CGAYFTFAISHEGHVYGFGLSNYHQLG-TPGTESCFIPQNLTSFKNSTKSWVGFSGGQHH 286
Query: 135 SSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTG 194
+ + +G+ Y G+ G+LGLG+ A+ IPT + L + + A G AVT
Sbjct: 287 TVCMDSEGKAYSLGRAEYGRLGLGE-GAEEKSIPTLISRLPAVSS--VACGASVGYAVTK 343
Query: 195 GGKVLSWGAGGSGRLGHGQESS 216
G+V +WG G + +LG GQ+
Sbjct: 344 DGRVFAWGMGTNYQLGTGQDED 365
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 5/128 (3%)
Query: 43 WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKA---LACGGAHTLFLTETGCVYATGLND 99
+G +Y +LG ES + P ++F K+S K+ + G HT+ + G Y+ G +
Sbjct: 245 FGLSNYHQLGTPGTESCFIPQNLTSF-KNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAE 303
Query: 100 FGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGK 159
+G+LG+ E P IS L V ++ G A+T DG ++ WG +N QLG G+
Sbjct: 304 YGRLGLGEGAEEKSIPTLISRLPA-VSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQ 362
Query: 160 KAAKVIPI 167
P+
Sbjct: 363 DEDAWSPV 370
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 44 GNGDYGRLGLGS-LESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQ 102
G +YGRLGLG E + P + S ++ ++ACG + +T+ G V+A G+ Q
Sbjct: 300 GRAEYGRLGLGEGAEEKSIPTLISRLP--AVSSVACGASVGYAVTKDGRVFAWGMGTNYQ 357
Query: 103 LGISENIGYSLEPLRISGLKKE---VVQISTGYHHSSAITVDGE 143
LG ++ + P+ + G + E V+ +S+G H+ + D E
Sbjct: 358 LGTGQDED-AWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKE 400
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 239 KVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVV---C 295
KVK++ H + E G V G V ++ E R+ + +P E+VV
Sbjct: 3 KVKVS-----HRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP--EDVVQAEA 55
Query: 296 GGYHTCVLTSGGELYTWGSNENGCLG 321
GG HT L+ G++Y++G N+ G LG
Sbjct: 56 GGMHTVCLSKSGQVYSFGCNDEGALG 81
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 37 RRFAALWGNGDYGRLGLGSLESRWRPV--VCSAFEKHSLKALACGGAHTLFLTE 88
R FA WG G +LG G E W PV + E + +++ GG HT+ L +
Sbjct: 346 RVFA--WGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVK 397
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 144/345 (41%), Gaps = 77/345 (22%)
Query: 44 GNGDYGRLGLGS--LE-SRWRPV--VCSAFEKHSLKALACGGAHTLFLTETGCVYATGLN 98
GNGD G+LGLG LE R PV + A + ++ GG H L LT++G +Y+ G N
Sbjct: 49 GNGDVGQLGLGEDILERKRLSPVAGIPDAVD------ISAGGMHNLVLTKSGDIYSFGCN 102
Query: 99 DFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWG--KNSNGQLG 156
D G LG + S + L + + IS G HS+ + DG ++ WG ++S+G +G
Sbjct: 103 DEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMG 162
Query: 157 LGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESS 216
L K PI + + G A G + V +T GKV + G G+LG E S
Sbjct: 163 LTIDGNKRTPI----DLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERS 218
Query: 217 ILG--------FLRSTSEYTPR----------------------------------LIKE 234
I G LR T R L E
Sbjct: 219 ISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHE 278
Query: 235 LEGVK------------VKIAAAGFLHSACIDENGRVYIFGDRAVDKM-LFQEGNHARRP 281
+G + ++ A G H+ + + + + G ++ L + +P
Sbjct: 279 TKGKEFALTPIKTELKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKP 338
Query: 282 SLISKLPYSEEVV---CGGYHTCVLTSGGELYTWGSNENGCLGIG 323
+++ KL +E++V CG + +T G+LY+WGS N LG+G
Sbjct: 339 TIVKKL--TEKIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVG 381
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 75/144 (52%), Gaps = 7/144 (4%)
Query: 87 TETGCVYATGLNDFGQLGISENIG--YSLEPLRISGLKKEVVQISTGYHHSSAITVDGEL 144
++T ++ATGLN+F QL E G ++L P++ K++ I+ G HH+ +T D +
Sbjct: 259 SQTQVIWATGLNNFKQLA-HETKGKEFALTPIKTE--LKDIRHIAGGQHHTVILTTDLKC 315
Query: 145 YMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAG 204
+ G+ G+LGLG V+ PT V+ L+ G S AVT GK+ SWG+G
Sbjct: 316 SVVGRPEYGRLGLGD-VKDVVEKPTIVKKLTEKIV-SVGCGEVCSYAVTIDGKLYSWGSG 373
Query: 205 GSGRLGHGQESSILGFLRSTSEYT 228
+ +LG G L + S+ T
Sbjct: 374 VNNQLGVGDGDDELEPIVVVSKNT 397
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 91/192 (47%), Gaps = 28/192 (14%)
Query: 139 TVDGELYMWGKNSNGQLGLG------KKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAV 192
TV G + + G GQLGLG K+ + V IP V+ +G ++ +
Sbjct: 40 TVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDAVDISAGGM---------HNLVL 90
Query: 193 TGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSAC 252
T G + S+G G LG +++S G SE P LI +L G K +AG HSAC
Sbjct: 91 TKSGDIYSFGCNDEGALG--RDTSEDG-----SESKPDLI-DLPG-KALCISAGDSHSAC 141
Query: 253 IDENGRVYIFG---DRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGEL 309
+ E+GRV+ +G D + L +GN R P + + + G H +LT+ G++
Sbjct: 142 LLEDGRVFAWGSFRDSHGNMGLTIDGNK-RTPIDLMEGTVCCSIASGADHLVILTTAGKV 200
Query: 310 YTWGSNENGCLG 321
+T G E G LG
Sbjct: 201 FTVGCAEQGQLG 212
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%)
Query: 69 EKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQI 128
E ++ +A G HT+ LT G ++G+LG+ + +P + L +++V +
Sbjct: 292 ELKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSV 351
Query: 129 STGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPI 167
G S A+T+DG+LY WG N QLG+G ++ PI
Sbjct: 352 GCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPI 390
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 80/185 (43%), Gaps = 28/185 (15%)
Query: 87 TETGCVYATGLNDFGQLGISENIGYSLEPLRISGLK--KEVVQISTGYHHSSAITVDGEL 144
T G V G D GQLG+ E+I LE R+S + + V IS G H+ +T G++
Sbjct: 40 TVLGNVLVCGNGDVGQLGLGEDI---LERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDI 96
Query: 145 YMWGKNSNGQLGL------GKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKV 198
Y +G N G LG + +I +P K C+S G S + G+V
Sbjct: 97 YSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISA--------GDSHSACLLEDGRV 148
Query: 199 LSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGR 258
+W GS R HG +G ++ TP I +EG A+G H + G+
Sbjct: 149 FAW---GSFRDSHGN----MGLTIDGNKRTP--IDLMEGTVCCSIASGADHLVILTTAGK 199
Query: 259 VYIFG 263
V+ G
Sbjct: 200 VFTVG 204
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 41 ALWGNGDYGRLGLGSLES-RWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLND 99
++ G +YGRLGLG ++ +P + + + ++ CG + +T G +Y+ G
Sbjct: 316 SVVGRPEYGRLGLGDVKDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTIDGKLYSWGSGV 374
Query: 100 FGQLGISENIGYSLEPLRI 118
QLG+ + LEP+ +
Sbjct: 375 NNQLGVGDG-DDELEPIVV 392
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 43 WGNGDYGRLGLGSLESRWRPVVCSAFE---KHSLKALACGGAHTLFLTE 88
WG+G +LG+G + P+V + KH L A + GG H +FL +
Sbjct: 370 WGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHMLLA-SGGGQHAIFLVK 417
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 90/187 (48%), Gaps = 19/187 (10%)
Query: 43 WGNGDYGRLGLGSLES-RWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFG 101
WGNG +LG +E R + + F +K +A G H LT+ + + GLN FG
Sbjct: 228 WGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFG 287
Query: 102 QLGISENI---GYSLEPLRISGLKKEVVQ-ISTGYHHSSAITVDGELYMWGKNSNGQLGL 157
Q G+SE++ +P R++ V++ I+ G HHS ++ DG+LY G+ ++G+
Sbjct: 288 QCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGI 347
Query: 158 GKK------------AAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGG 205
K A+ +P+PTK+ + K A G SVAV G SWG G
Sbjct: 348 PKDNLPEYTYKDVHGKARAVPLPTKLNNVPKF--KSVAAGSHHSVAVAQNGIAYSWGFGE 405
Query: 206 SGRLGHG 212
+ +G G
Sbjct: 406 TYAVGLG 412
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 80/315 (25%), Positives = 129/315 (40%), Gaps = 54/315 (17%)
Query: 43 WGNGDYGRLGLGSLESRW---RPVVCSAFEKHSLK--ALACGGAHTLFLTETGCVYATGL 97
WG G LGLG L RP + + K + A GG HTL L E V++ G
Sbjct: 34 WGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGC 93
Query: 98 NDFGQLG-ISENIGYSLE---------------------PLRIS-------GLKKEVVQI 128
ND G LG + N L+ P +I +VVQ+
Sbjct: 94 NDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQL 153
Query: 129 STGYHHSSAITVDGELYMWG--KNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF 186
+ + S A+ +GE+Y WG + + G LG + K+ P KV S Q A G
Sbjct: 154 AATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGK 213
Query: 187 EQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAG 246
+ + + G V +WG G +LG + F T + P ++ VK A+G
Sbjct: 214 DHILFLDEEGMVFAWGNGQQNQLGR---KVMERFRLKTLDPRPFGLRH-----VKYIASG 265
Query: 247 FLHSACIDENGRVY-----IFGDRAVDKMLFQEGNHARRPSLISKLPYS---EEVVCGGY 298
H + ++ ++ FG V + + ++G +P ++ LP + + G +
Sbjct: 266 ENHCFALTKDNKLVSWGLNQFGQCGVSEDV-EDGALVTKPKRLA-LPDNVVIRSIAAGEH 323
Query: 299 HTCVLTSGGELYTWG 313
H+ +L+ G+LY+ G
Sbjct: 324 HSLILSQDGDLYSCG 338
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 91/209 (43%), Gaps = 8/209 (3%)
Query: 62 PVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPL--RIS 119
P F K+++ LA G H LFL E G V+A G QLG + L+ L R
Sbjct: 195 PWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPF 254
Query: 120 GLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAK--VIPIPTKVECLSGI 177
GL + V I++G +H A+T D +L WG N GQ G+ + ++ P ++ +
Sbjct: 255 GL-RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNV 313
Query: 178 FTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQES---SILGFLRSTSEYTPRLIKE 234
+ A G S+ ++ G + S G +G +++ + + P K
Sbjct: 314 VIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKL 373
Query: 235 LEGVKVKIAAAGFLHSACIDENGRVYIFG 263
K K AAG HS + +NG Y +G
Sbjct: 374 NNVPKFKSVAAGSHHSVAVAQNGIAYSWG 402
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/294 (23%), Positives = 121/294 (41%), Gaps = 30/294 (10%)
Query: 53 LGSLESRWRPVVCSAF----EKHSLKALACGGAHTLFLTETGCVYATGLN--DFGQLGIS 106
L LES + +F E H + LA + L G VYA G + G LG
Sbjct: 126 LNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFY 185
Query: 107 EN-IGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKV 164
++ I P ++ K +VQ++ G H + +G ++ WG QLG +K +
Sbjct: 186 QDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLG--RKVMER 243
Query: 165 IPIPTKVECLSGI-FTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRS 223
+ T G+ K A G A+T K++SWG G+ G ++ +
Sbjct: 244 FRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTK 303
Query: 224 TSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGN------- 276
P+ + + V ++ AAG HS + ++G +Y G + ++ + N
Sbjct: 304 -----PKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYK 358
Query: 277 --HARR-----PSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIG 323
H + P+ ++ +P + V G +H+ + G Y+WG E +G+G
Sbjct: 359 DVHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLG 412
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 84/230 (36%), Gaps = 37/230 (16%)
Query: 125 VVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGK-------KAAKVIPIPTKVECLSGI 177
++ Y H +++ WG S +LGLG K ++ P + E
Sbjct: 12 IINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIIS 71
Query: 178 FTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESS------------------ILG 219
F A+G ++A+ V SWG G LG ++ L
Sbjct: 72 F----AVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLN 127
Query: 220 FLRSTSEYTPR--LIKELEGVKVKIAAAGFLHSACIDENGRVYIFGD-RAVDKMLFQEGN 276
L ST PR EG KV AA S + NG VY +G R + +L +
Sbjct: 128 ELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQD 187
Query: 277 HARRPSLISKLP-YSE----EVVCGGYHTCVLTSGGELYTWGSNENGCLG 321
+ K+P +S+ ++ G H L G ++ WG+ + LG
Sbjct: 188 KIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLG 237
>pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii
In Complex With Tem-1 Beta-Lactamase
Length = 273
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 101/260 (38%), Gaps = 64/260 (24%)
Query: 57 ESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPL 116
+ W A + + A+A G H L L + G V G N GQL ++
Sbjct: 12 NNDWGEATVPAEAQSGVDAIAGGYFHGLAL-KGGKVLGWGANLNGQL--------TMPAA 62
Query: 117 RISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSG 176
SG+ I+ G +HS A+ DGE+ WG N +GQ +P E SG
Sbjct: 63 TQSGVDA----IAAGNYHSLALK-DGEVIAWGGNEDGQ--------TTVP----AEARSG 105
Query: 177 IFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELE 236
+ A G S A+ GKV++WG G+ T +
Sbjct: 106 V--DAIAAGAWASYALK-DGKVIAWGDDSDGQ-------------------TTVPAEAQS 143
Query: 237 GVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCG 296
GV A G +++A +NG V +GD N+ + ++ ++ + V G
Sbjct: 144 GV---TALDGGVYTALAVKNGGVIAWGD-----------NYFGQTTVPAEAQSGVDDVAG 189
Query: 297 G-YHTCVLTSGGELYTWGSN 315
G +H+ L G++ WG N
Sbjct: 190 GIFHSLALKD-GKVIAWGDN 208
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 291 EEVVCGGYHTCVLTSGGELYTWGSNENG 318
+ + G YH+ L G E+ WG NE+G
Sbjct: 68 DAIAAGNYHSLALKDG-EVIAWGGNEDG 94
>pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|A Chain A, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|C Chain C, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|D Chain D, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|E Chain E, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|F Chain F, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
Length = 282
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 101/260 (38%), Gaps = 64/260 (24%)
Query: 57 ESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPL 116
+ W A + + A+A G H L L + G V G N GQL ++
Sbjct: 10 NNDWGEATVPAEAQSGVDAIAGGYFHGLAL-KGGKVLGWGANLNGQL--------TMPAA 60
Query: 117 RISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSG 176
SG+ I+ G +HS A+ DGE+ WG N +GQ +P E SG
Sbjct: 61 TQSGVDA----IAAGNYHSLALK-DGEVIAWGGNEDGQ--------TTVP----AEARSG 103
Query: 177 IFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELE 236
+ A G S A+ GKV++WG G+ T +
Sbjct: 104 V--DAIAAGAWASYALK-DGKVIAWGDDSDGQ-------------------TTVPAEAQS 141
Query: 237 GVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCG 296
GV A G +++A +NG V +GD N+ + ++ ++ + V G
Sbjct: 142 GV---TALDGGVYTALAVKNGGVIAWGD-----------NYFGQTTVPAEAQSGVDDVAG 187
Query: 297 G-YHTCVLTSGGELYTWGSN 315
G +H+ L G++ WG N
Sbjct: 188 GIFHSLALKD-GKVIAWGDN 206
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 291 EEVVCGGYHTCVLTSGGELYTWGSNENG 318
+ + G YH+ L G E+ WG NE+G
Sbjct: 66 DAIAAGNYHSLALKDG-EVIAWGGNEDG 92
>pdb|4GBF|A Chain A, Crystal Structure Of The C-Terminal Domain Of Gp131 From
Bacteriophage Phikz
pdb|4GBF|B Chain B, Crystal Structure Of The C-Terminal Domain Of Gp131 From
Bacteriophage Phikz
Length = 400
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 15/78 (19%)
Query: 132 YHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVA 191
Y H + + DG++ +G N NGQ + A I Q A G +V
Sbjct: 318 YTHYTVMYGDGQIAFFGNNDNGQCDVDDHAGPYI---------------QLAAGHNFTVT 362
Query: 192 VTGGGKVLSWGAGGSGRL 209
V +V+ WG L
Sbjct: 363 VNTLNQVMFWGDSPDNSL 380
>pdb|3PIG|A Chain A, Beta-Fructofuranosidase From Bifidobacterium Longum
pdb|3PIG|B Chain B, Beta-Fructofuranosidase From Bifidobacterium Longum
pdb|3PIJ|A Chain A, Beta-Fructofuranosidase From Bifidobacterium Longum -
Complex With Fructose
pdb|3PIJ|B Chain B, Beta-Fructofuranosidase From Bifidobacterium Longum -
Complex With Fructose
Length = 526
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 205 GSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENG--RVYIF 262
G GH + +L + R + P L +E +GV F SA ID+NG R Y
Sbjct: 79 GPMHWGHVSSTDMLNWKREPIMFAPSLEQEKDGV--------FSGSAVIDDNGDLRFYYT 130
Query: 263 GDR 265
G R
Sbjct: 131 GHR 133
>pdb|1NRI|A Chain A, Crystal Structure Of Putative Phosphosugar Isomerase
Hi0754 From Haemophilus Influenzae
Length = 306
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 157 LGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSV-AVTGGGKVLSWGAGGSGRLG 210
L + K++P+ + CL Q +L EQ V A GG+++ GAG SGRLG
Sbjct: 38 LXNEEDKLVPLAIE-SCLP-----QISLAVEQIVQAFQQGGRLIYIGAGTSGRLG 86
>pdb|1G5R|A Chain A, The Three-dimensional Structure Of Atp:corrinoid
Adenosyltransferase From Salmonella Typhimurium. Apo
Form
Length = 196
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 190 VAVTGGGKVLSWGAGGSGR--LGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF 247
+ TG GK + A G+ +GHG+ ++ F++ T R + E GV+ ++ A GF
Sbjct: 32 IVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVXATGF 91
>pdb|4HUT|A Chain A, Structure Of Atp:co(i)rrinoid Adenosyltransferase (coba)
From Salmonella Enterica In Complex With Four And
Five-coordinate Cob(ii) Alamin And Atp
pdb|4HUT|B Chain B, Structure Of Atp:co(i)rrinoid Adenosyltransferase (coba)
From Salmonella Enterica In Complex With Four And
Five-coordinate Cob(ii) Alamin And Atp
Length = 191
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 190 VAVTGGGKVLSWGAGGSGR--LGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF 247
+ TG GK + A G+ +GHG+ ++ F++ T R + E GV+ ++ A GF
Sbjct: 27 IVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGF 86
>pdb|1G5T|A Chain A, The Three-Dimensional Structure Of Atp:corrinoid
Adenosyltransferase From Salmonella Typhimurium. Apo-Atp
Form
pdb|1G64|A Chain A, The Three-Dimensional Structure Of Atp:corrinoid
Adenosyltransferase From Salmonella Typhimurium.
CobalaminATP TERNARY COMPLEX
pdb|1G64|B Chain B, The Three-Dimensional Structure Of Atp:corrinoid
Adenosyltransferase From Salmonella Typhimurium.
CobalaminATP TERNARY COMPLEX
Length = 196
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 190 VAVTGGGKVLSWGAGGSGR--LGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF 247
+ TG GK + A G+ +GHG+ ++ F++ T R + E GV+ ++ A GF
Sbjct: 32 IVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGF 91
>pdb|3NQH|A Chain A, Crystal Structure Of A Glycosyl Hydrolase (Bt_2959) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.11 A
Resolution
Length = 441
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 249 HSACI-DENGRVYIFGDRAVDK 269
H ACI +ENGR Y+FG+ DK
Sbjct: 25 HGACIVEENGRYYLFGEYKSDK 46
>pdb|3HA1|A Chain A, Alanine Racemase From Bacillus Anthracis (Ames)
pdb|3HA1|B Chain B, Alanine Racemase From Bacillus Anthracis (Ames)
Length = 397
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 9/110 (8%)
Query: 155 LGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAG---GSGRLGH 211
L LG + I + + + +F K+ ++++ + G + + G GR+G
Sbjct: 85 LVLGPSPPRDINVAAENDVALTVFQKEWV---DEAIKLWDGSSTMKYHINFDSGMGRIGI 141
Query: 212 GQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYI 261
+ + GFL+S E P L ELEGV A A + ++ D+ ++
Sbjct: 142 RERKELKGFLKSL-EGAPFL--ELEGVYTHFATADEVETSYFDKQYNTFL 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,458,582
Number of Sequences: 62578
Number of extensions: 451086
Number of successful extensions: 1264
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 987
Number of HSP's gapped (non-prelim): 92
length of query: 323
length of database: 14,973,337
effective HSP length: 99
effective length of query: 224
effective length of database: 8,778,115
effective search space: 1966297760
effective search space used: 1966297760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)