Query 020659
Match_columns 323
No_of_seqs 172 out of 1811
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 04:08:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020659.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020659hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 1.2E-46 2.6E-51 331.9 24.8 298 16-323 103-427 (476)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 4.9E-44 1.1E-48 315.4 23.1 283 27-323 59-375 (476)
3 KOG1427 Uncharacterized conser 100.0 3.5E-42 7.5E-47 286.1 15.2 281 24-322 65-361 (443)
4 KOG1427 Uncharacterized conser 100.0 2.3E-37 5E-42 257.4 16.9 281 34-317 16-311 (443)
5 KOG0783 Uncharacterized conser 100.0 2E-29 4.3E-34 233.6 14.9 273 30-317 134-418 (1267)
6 KOG1428 Inhibitor of type V ad 100.0 1.5E-28 3.3E-33 235.9 20.5 290 8-321 468-852 (3738)
7 KOG0783 Uncharacterized conser 99.9 9.2E-25 2E-29 202.9 17.6 265 21-310 181-453 (1267)
8 KOG1428 Inhibitor of type V ad 99.9 2.1E-21 4.5E-26 187.6 19.8 244 17-288 525-872 (3738)
9 PF00415 RCC1: Regulator of ch 99.3 2.3E-12 5E-17 82.6 5.4 50 37-86 1-51 (51)
10 PF00415 RCC1: Regulator of ch 99.3 1E-11 2.3E-16 79.5 5.2 50 141-192 1-51 (51)
11 PF13540 RCC1_2: Regulator of 99.2 1.1E-11 2.4E-16 69.4 4.4 30 290-319 1-30 (30)
12 PF13540 RCC1_2: Regulator of 99.2 2.6E-11 5.6E-16 67.9 4.2 30 179-208 1-30 (30)
13 KOG0941 E3 ubiquitin protein l 99.0 5.5E-12 1.2E-16 119.4 -6.3 171 124-308 15-198 (850)
14 KOG0941 E3 ubiquitin protein l 98.9 2.1E-11 4.6E-16 115.5 -7.0 142 168-318 5-156 (850)
15 KOG3669 Uncharacterized conser 95.7 1.1 2.4E-05 42.3 16.5 108 78-201 190-299 (705)
16 KOG0943 Predicted ubiquitin-pr 95.4 0.001 2.2E-08 66.5 -4.0 134 124-269 375-509 (3015)
17 KOG0291 WD40-repeat-containing 93.0 10 0.00022 37.4 19.4 243 22-321 303-556 (893)
18 KOG3669 Uncharacterized conser 92.8 2.1 4.5E-05 40.6 11.6 70 239-312 228-299 (705)
19 PF11725 AvrE: Pathogenicity f 92.6 0.65 1.4E-05 49.2 8.9 108 173-307 699-815 (1774)
20 cd00200 WD40 WD40 domain, foun 92.2 6.1 0.00013 33.1 24.5 106 72-203 95-206 (289)
21 cd00200 WD40 WD40 domain, foun 92.1 6.4 0.00014 33.0 25.4 98 29-150 22-123 (289)
22 KOG0943 Predicted ubiquitin-pr 90.0 0.052 1.1E-06 55.0 -1.6 129 175-314 372-504 (3015)
23 KOG0293 WD40 repeat-containing 88.5 20 0.00043 32.9 14.4 70 121-203 394-469 (519)
24 PF07569 Hira: TUP1-like enhan 87.3 3.6 7.8E-05 34.7 7.9 29 177-205 13-41 (219)
25 KOG1408 WD40 repeat protein [F 86.2 23 0.0005 35.0 13.1 26 124-149 219-248 (1080)
26 KOG0646 WD40 repeat protein [G 86.1 16 0.00035 33.8 11.6 157 121-312 80-244 (476)
27 PF07569 Hira: TUP1-like enhan 85.9 6.4 0.00014 33.2 8.7 30 121-150 11-40 (219)
28 KOG0315 G-protein beta subunit 85.7 22 0.00047 30.5 17.4 102 77-204 92-197 (311)
29 KOG0315 G-protein beta subunit 85.3 23 0.0005 30.4 18.8 68 179-266 127-198 (311)
30 PF04841 Vps16_N: Vps16, N-ter 84.5 35 0.00076 31.8 19.1 70 71-149 81-154 (410)
31 TIGR03300 assembly_YfgL outer 83.9 23 0.00049 32.3 12.2 55 248-312 321-376 (377)
32 PF11725 AvrE: Pathogenicity f 83.6 29 0.00062 37.7 13.4 67 233-312 698-769 (1774)
33 TIGR01063 gyrA DNA gyrase, A s 82.6 61 0.0013 33.2 16.7 165 128-312 542-715 (800)
34 PRK13979 DNA topoisomerase IV 81.3 74 0.0016 33.2 21.7 127 76-211 559-696 (957)
35 PHA02713 hypothetical protein; 80.1 28 0.00061 33.9 11.7 20 131-150 341-360 (557)
36 KOG0646 WD40 repeat protein [G 76.8 65 0.0014 30.1 18.2 154 72-262 83-244 (476)
37 KOG0291 WD40-repeat-containing 76.8 85 0.0018 31.4 20.9 105 36-150 106-219 (893)
38 PRK05560 DNA gyrase subunit A; 75.4 1E+02 0.0022 31.6 17.1 164 128-311 544-717 (805)
39 COG4257 Vgb Streptogramin lyas 74.9 57 0.0012 28.6 10.5 102 79-204 62-167 (353)
40 smart00706 TECPR Beta propelle 74.2 7.8 0.00017 21.8 3.8 25 238-262 8-33 (35)
41 PHA03098 kelch-like protein; P 72.1 97 0.0021 29.8 14.3 17 133-150 335-351 (534)
42 KOG4441 Proteins containing BT 72.0 34 0.00073 33.5 9.8 22 243-264 509-530 (571)
43 TIGR03300 assembly_YfgL outer 71.8 79 0.0017 28.7 12.0 15 248-262 362-376 (377)
44 PRK13979 DNA topoisomerase IV 71.8 1.4E+02 0.0029 31.4 17.5 125 128-271 559-695 (957)
45 KOG0649 WD40 repeat protein [G 71.1 18 0.00039 30.9 6.5 113 199-312 24-141 (325)
46 PHA02713 hypothetical protein; 69.7 1.1E+02 0.0025 29.7 13.5 20 79-98 341-360 (557)
47 KOG1900 Nuclear pore complex, 68.0 1.8E+02 0.0038 31.2 17.5 63 84-149 93-156 (1311)
48 PF04841 Vps16_N: Vps16, N-ter 68.0 1.1E+02 0.0023 28.6 21.7 25 73-97 130-154 (410)
49 PF12341 DUF3639: Protein of u 66.8 17 0.00036 19.5 3.6 24 71-94 2-25 (27)
50 PF06433 Me-amine-dh_H: Methyl 66.0 14 0.00031 33.2 5.3 139 179-319 30-169 (342)
51 KOG1274 WD40 repeat protein [G 64.9 1.7E+02 0.0037 29.9 14.7 70 78-149 13-85 (933)
52 TIGR02658 TTQ_MADH_Hv methylam 63.8 1.2E+02 0.0026 27.7 12.3 131 179-312 40-172 (352)
53 COG4257 Vgb Streptogramin lyas 62.4 1.1E+02 0.0024 26.9 10.5 138 28-201 63-205 (353)
54 PRK11138 outer membrane biogen 60.9 1.4E+02 0.003 27.5 12.5 18 296-313 375-392 (394)
55 PRK14131 N-acetylneuraminic ac 60.6 1.4E+02 0.0029 27.4 14.3 17 188-204 132-148 (376)
56 PRK05560 DNA gyrase subunit A; 58.9 2.2E+02 0.0048 29.3 20.7 214 77-315 545-772 (805)
57 TIGR01063 gyrA DNA gyrase, A s 57.7 2.3E+02 0.005 29.1 22.0 215 77-315 543-769 (800)
58 PF03785 Peptidase_C25_C: Pept 55.8 25 0.00055 24.3 4.0 42 279-320 7-49 (81)
59 PF06739 SBBP: Beta-propeller 53.5 17 0.00038 21.0 2.6 17 188-204 16-32 (38)
60 KOG1900 Nuclear pore complex, 53.0 92 0.002 33.2 9.0 59 136-203 93-156 (1311)
61 KOG1230 Protein containing rep 52.4 1.6E+02 0.0035 27.4 9.5 20 246-265 232-251 (521)
62 PHA03098 kelch-like protein; P 51.6 2.3E+02 0.005 27.2 16.9 16 133-149 382-397 (534)
63 PHA02790 Kelch-like protein; P 50.6 2.3E+02 0.0049 27.0 11.1 52 252-314 403-454 (480)
64 KOG0316 Conserved WD40 repeat- 50.4 1.6E+02 0.0035 25.2 14.3 181 26-263 111-297 (307)
65 TIGR03548 mutarot_permut cycli 49.4 1.9E+02 0.0041 25.7 12.9 15 251-265 166-180 (323)
66 PLN02153 epithiospecifier prot 49.0 2E+02 0.0043 25.8 15.7 15 188-202 307-321 (341)
67 TIGR01062 parC_Gneg DNA topois 48.5 3.1E+02 0.0067 27.9 13.7 156 130-317 492-656 (735)
68 KOG2096 WD40 repeat protein [G 47.9 2.1E+02 0.0045 25.7 12.2 78 122-199 278-365 (420)
69 KOG1240 Protein kinase contain 47.9 3.9E+02 0.0084 28.8 13.6 116 20-149 1052-1180(1431)
70 KOG0293 WD40 repeat-containing 47.3 2.4E+02 0.0052 26.2 16.8 28 239-266 442-471 (519)
71 PF02239 Cytochrom_D1: Cytochr 46.6 2.2E+02 0.0047 26.1 9.9 65 124-203 28-96 (369)
72 KOG0278 Serine/threonine kinas 45.4 2E+02 0.0044 24.9 11.5 38 112-149 133-172 (334)
73 PF04762 IKI3: IKI3 family; I 44.8 4E+02 0.0086 28.0 18.2 29 121-149 425-455 (928)
74 KOG0296 Angio-associated migra 44.6 2.5E+02 0.0054 25.6 18.1 113 18-154 66-182 (399)
75 PF04762 IKI3: IKI3 family; I 43.7 4.1E+02 0.0089 27.9 20.0 27 71-97 427-455 (928)
76 PHA02790 Kelch-like protein; P 42.3 1.7E+02 0.0037 27.9 8.9 15 136-150 357-371 (480)
77 PF02239 Cytochrom_D1: Cytochr 42.0 2.8E+02 0.006 25.4 10.3 114 178-313 28-156 (369)
78 PLN03215 ascorbic acid mannose 41.8 1.4E+02 0.003 27.5 7.7 62 178-263 161-225 (373)
79 PF13418 Kelch_4: Galactose ox 39.4 32 0.00069 20.7 2.4 17 186-202 3-19 (49)
80 KOG1274 WD40 repeat protein [G 38.8 4.6E+02 0.01 27.1 20.9 60 36-97 24-85 (933)
81 PRK14131 N-acetylneuraminic ac 38.4 3.1E+02 0.0068 25.0 18.1 18 133-150 131-148 (376)
82 KOG1034 Transcriptional repres 38.2 89 0.0019 28.0 5.6 58 190-264 323-382 (385)
83 PF07250 Glyoxal_oxid_N: Glyox 37.2 1.2E+02 0.0025 26.1 6.1 77 75-151 113-190 (243)
84 KOG0275 Conserved WD40 repeat- 35.9 3.3E+02 0.007 24.5 10.9 23 244-266 446-468 (508)
85 PF14517 Tachylectin: Tachylec 35.0 2.8E+02 0.0062 23.5 9.9 24 124-147 131-155 (229)
86 KOG1034 Transcriptional repres 33.2 90 0.002 28.0 4.8 63 27-97 318-382 (385)
87 PLN00181 protein SPA1-RELATED; 32.2 5.6E+02 0.012 26.1 26.5 145 27-203 494-647 (793)
88 PF03785 Peptidase_C25_C: Pept 31.4 1.7E+02 0.0036 20.4 4.9 40 113-153 7-47 (81)
89 PLN03215 ascorbic acid mannose 31.3 2.6E+02 0.0057 25.7 7.7 61 73-148 162-225 (373)
90 KOG4441 Proteins containing BT 30.4 5.3E+02 0.012 25.3 12.7 56 252-314 471-530 (571)
91 TIGR03548 mutarot_permut cycli 30.1 3.9E+02 0.0084 23.6 13.5 17 134-150 164-180 (323)
92 PF01436 NHL: NHL repeat; Int 28.8 98 0.0021 16.3 3.1 18 249-266 5-22 (28)
93 KOG2111 Uncharacterized conser 28.2 4.4E+02 0.0096 23.6 13.6 26 176-202 94-119 (346)
94 PF10168 Nup88: Nuclear pore c 26.8 3.8E+02 0.0082 27.2 8.6 123 190-312 36-176 (717)
95 PF00167 FGF: Fibroblast growt 26.7 2.7E+02 0.0058 20.7 9.4 65 73-147 2-66 (122)
96 PF06204 CBM_X: Putative carbo 26.3 2E+02 0.0043 19.0 5.3 28 124-151 26-53 (66)
97 TIGR01062 parC_Gneg DNA topois 25.8 7.2E+02 0.016 25.3 16.3 163 78-272 492-661 (735)
98 KOG0278 Serine/threonine kinas 25.7 4.5E+02 0.0097 22.9 11.2 41 58-98 132-173 (334)
99 TIGR01061 parC_Gpos DNA topois 25.7 7.3E+02 0.016 25.3 16.3 163 128-309 538-710 (738)
100 PF13938 DUF4213: Domain of un 25.5 95 0.0021 21.7 3.2 23 68-90 9-31 (87)
101 KOG2280 Vacuolar assembly/sort 25.2 7.4E+02 0.016 25.2 13.3 145 133-312 95-243 (829)
102 TIGR01061 parC_Gpos DNA topois 25.2 7.4E+02 0.016 25.3 15.5 129 77-213 539-675 (738)
103 PF08887 GAD-like: GAD-like do 24.9 71 0.0015 23.6 2.5 22 245-266 77-98 (109)
104 PF11399 DUF3192: Protein of u 24.2 61 0.0013 23.6 1.9 26 244-269 76-101 (102)
105 KOG1240 Protein kinase contain 23.9 9.6E+02 0.021 26.1 14.0 118 124-266 1050-1182(1431)
106 PF08450 SGL: SMP-30/Gluconola 23.4 4.4E+02 0.0096 22.0 17.5 55 248-305 186-244 (246)
107 KOG0282 mRNA splicing factor [ 22.7 6.7E+02 0.015 23.9 15.8 73 241-318 391-465 (503)
108 PLN02772 guanylate kinase 22.4 1.6E+02 0.0035 27.3 4.8 66 188-264 28-94 (398)
109 KOG0307 Vesicle coat complex C 22.3 1.8E+02 0.0039 30.4 5.4 32 290-321 256-290 (1049)
110 smart00442 FGF Acidic and basi 22.1 3.5E+02 0.0076 20.4 10.8 65 72-147 3-68 (126)
111 KOG2444 WD40 repeat protein [G 21.6 1.7E+02 0.0037 24.8 4.3 31 241-271 64-94 (238)
112 PF13854 Kelch_5: Kelch motif 21.1 1.1E+02 0.0024 17.8 2.4 17 186-203 6-22 (42)
113 KOG2280 Vacuolar assembly/sort 20.4 9.2E+02 0.02 24.6 15.2 58 83-149 97-154 (829)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=1.2e-46 Score=331.91 Aligned_cols=298 Identities=29% Similarity=0.449 Sum_probs=247.6
Q ss_pred hhhhcccccceeeeEEecccCcceEEEeeCCCCCCCCCCC----------------CCCeeceeEecc----CCCCceEE
Q 020659 16 QDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGS----------------LESRWRPVVCSA----FEKHSLKA 75 (323)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~n~~gqlG~~~----------------~~~~~~p~~v~~----~~~~~i~~ 75 (323)
.-..+.++||..|+..+. .|+.||+||.|..|+||... .+....|..++. ....+|++
T Consensus 103 ~~~i~~~acGg~hsl~ld--~Dg~lyswG~N~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~ 180 (476)
T COG5184 103 KASIIKIACGGNHSLGLD--HDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVK 180 (476)
T ss_pred ceeeEEeecCCceEEeec--CCCCEEEeccCcccccccccccccccccccccccchhhcccCCceeeccccccCChheEE
Confidence 355677889999999988 99999999999999999875 122567888876 23458999
Q ss_pred EEeCccceEEEEcCCcEEEEeCCCCccccCCCCCC-----ceecceEecCCCCceEEEEcCCCeEEEEEcCCcEEEEeCC
Q 020659 76 LACGGAHTLFLTETGCVYATGLNDFGQLGISENIG-----YSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKN 150 (323)
Q Consensus 76 v~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~-----~~~~p~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n 150 (323)
++||++++++|+++|+||+||....+.++.+.... ....|..+. +..|+++++|.+|.++|+++|++|+||+|
T Consensus 181 l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~--~~~i~qla~G~dh~i~lt~~G~vy~~Gs~ 258 (476)
T COG5184 181 LACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP--KKAIVQLAAGADHLIALTNEGKVYGWGSN 258 (476)
T ss_pred eecCCceEEEEccCCcEEEecCccccccccccccccccceeeeeeeecC--chheeeeccCCceEEEEecCCcEEEecCC
Confidence 99999999999999999999999988888773222 223444444 56899999999999999999999999999
Q ss_pred CCCCCCCCCCCCcccccceEecccCCceEEEEecCCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccce
Q 020659 151 SNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPR 230 (323)
Q Consensus 151 ~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~ 230 (323)
..||||....+......+.- ..+.-..|+.|+||.+|+++|+++|++|+||.|.+||+|....... ......|+
T Consensus 259 qkgqlG~~~~e~~~~~~lv~-~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~-----~a~~tk~~ 332 (476)
T COG5184 259 QKGQLGRPTSERLKLVVLVG-DPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEI-----GALTTKPN 332 (476)
T ss_pred cccccCCchhhhcccccccC-ChhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccCccccc-----ceeecccc
Confidence 99999998877633222211 1111123789999999999999999999999999999999832111 23445566
Q ss_pred eecccCCCcEEEEecCCCeeEEEecCCcEEEEeCCCCCcCCcCC--CCCcCCCeeecCCCCeeEEEecCCeeEEEEcCCC
Q 020659 231 LIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQE--GNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGE 308 (323)
Q Consensus 231 ~i~~~~~~~i~~i~~g~~~~~~lt~~g~ly~wG~n~~gqlg~~~--~~~~~~p~~v~~~~~i~~v~~G~~~~~~l~~~g~ 308 (323)
....+....|..++++..|+++|..+|.||+||.+..+|||..+ +..+..|.++.....+..|+||..|.++.+++|+
T Consensus 333 ~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~~~~~~~v~~gt~~~~~~t~~gs 412 (476)
T COG5184 333 YKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVAIKLEQVACGTHHNIARTDDGS 412 (476)
T ss_pred ccccCCCceEEEEecCcceEEEEecCceEEEecCCccccccCcccceeecCCccccccccceEEEEecCccceeeccCCc
Confidence 66666666799999999999999999999999999999999998 7888889989888899999999999999999999
Q ss_pred EEEeeCCCCCccCCC
Q 020659 309 LYTWGSNENGCLGIG 323 (323)
Q Consensus 309 v~~~G~n~~gqLG~G 323 (323)
||+||++++||||.|
T Consensus 413 vy~wG~ge~gnlG~g 427 (476)
T COG5184 413 VYSWGWGEHGNLGNG 427 (476)
T ss_pred eEEecCchhhhccCC
Confidence 999999999999986
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=4.9e-44 Score=315.45 Aligned_cols=283 Identities=29% Similarity=0.472 Sum_probs=231.2
Q ss_pred eeeEEecccCcceEEEeeCCCCCCCCCCCCCCe-eceeEeccC--CCCceEEEEeCccceEEEEcCCcEEEEeCCCCccc
Q 020659 27 CKRWISSTLQRRFAALWGNGDYGRLGLGSLESR-WRPVVCSAF--EKHSLKALACGGAHTLFLTETGCVYATGLNDFGQL 103 (323)
Q Consensus 27 ~~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~-~~p~~v~~~--~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~gql 103 (323)
.|....+ ....||+||.|..++||.+..+.. ..|+..++. ....|++++||..|+++|++||+||+||.|..|+|
T Consensus 59 ~~~~~~~--~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~L 136 (476)
T COG5184 59 KHTHLLV--KMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGAL 136 (476)
T ss_pred cchhhhh--heeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCccccc
Confidence 3444444 667799999999999999987775 889988887 66789999999999999999999999999999999
Q ss_pred cCCC---------------CCCceecceEecCC-----CCceEEEEcCCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCc
Q 020659 104 GISE---------------NIGYSLEPLRISGL-----KKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAK 163 (323)
Q Consensus 104 g~~~---------------~~~~~~~p~~~~~~-----~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~ 163 (323)
|+.. ..+...+|..++.. ..++++++||++++++|+++|+||.||...-+.++.+...++
T Consensus 137 gr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s 216 (476)
T COG5184 137 GRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNS 216 (476)
T ss_pred ccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCcccccccccccccc
Confidence 9986 23345678777752 227999999999999999999999999999888888755443
Q ss_pred cc----ccceEecccCCceEEEEecCCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeec-ccCCC
Q 020659 164 VI----PIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIK-ELEGV 238 (323)
Q Consensus 164 ~~----~~p~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~-~~~~~ 238 (323)
.. .+|.+++ ...|+++++|.+|.++|+++|++|.||++..||||+...... ..+..+. .+.-.
T Consensus 217 ~k~~~~~~p~~v~---~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~---------~~~~lv~~~f~i~ 284 (476)
T COG5184 217 QKTSIQFTPLKVP---KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERL---------KLVVLVGDPFAIR 284 (476)
T ss_pred ccceeeeeeeecC---chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhc---------ccccccCChhhhh
Confidence 33 5565555 346999999999999999999999999999999999875322 2222222 12223
Q ss_pred cEEEEecCCCeeEEEecCCcEEEEeCCCCCcCCcCCC----CCcCCCeeecCCCC--eeEEEecCCeeEEEEcCCCEEEe
Q 020659 239 KVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEG----NHARRPSLISKLPY--SEEVVCGGYHTCVLTSGGELYTW 312 (323)
Q Consensus 239 ~i~~i~~g~~~~~~lt~~g~ly~wG~n~~gqlg~~~~----~~~~~p~~v~~~~~--i~~v~~G~~~~~~l~~~g~v~~~ 312 (323)
.|+.|+||.+|+++|+++|++|+||.|.++|||.+.. .....|.....+.. |..+++|..|+++|..+|.||+|
T Consensus 285 ~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~ 364 (476)
T COG5184 285 NIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAF 364 (476)
T ss_pred hhhhcccCcceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEe
Confidence 4788999999999999999999999999999998822 12334444444554 89999999999999999999999
Q ss_pred eCCCCCccCCC
Q 020659 313 GSNENGCLGIG 323 (323)
Q Consensus 313 G~n~~gqLG~G 323 (323)
|.+..+|||+.
T Consensus 365 Gr~~~~qlg~~ 375 (476)
T COG5184 365 GRGDRGQLGIQ 375 (476)
T ss_pred cCCccccccCc
Confidence 99999999973
No 3
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=3.5e-42 Score=286.08 Aligned_cols=281 Identities=29% Similarity=0.448 Sum_probs=244.5
Q ss_pred cceeeeEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeCccceEEEEcCCcEEEEeCCCCccc
Q 020659 24 LGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQL 103 (323)
Q Consensus 24 ~~~~~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~gql 103 (323)
|...|++++. .+++.|.||.|..||||+++...+..|+.|+.+...+|++-+||++|+++||++|++|.||.|.+|||
T Consensus 65 ~~aaH~vli~--megk~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQl 142 (443)
T KOG1427|consen 65 CAAAHCVLID--MEGKCYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQL 142 (443)
T ss_pred cchhhEEEEe--cccceeecccCccCccCccchhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccc
Confidence 3446777777 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCceecceEecCCCCceEEEEcCCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCC------------cccccceEe
Q 020659 104 GISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAA------------KVIPIPTKV 171 (323)
Q Consensus 104 g~~~~~~~~~~p~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~------------~~~~~p~~~ 171 (323)
|.++.......|.++.....+|+.|+||..+++.|+..+.+.+.|...|||||+++... ...+.|..+
T Consensus 143 Glgn~~~~v~s~~~~~~~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i 222 (443)
T KOG1427|consen 143 GLGNAKNEVESTPLPCVVSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAI 222 (443)
T ss_pred cccccccccccCCCccccCccceeeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCcccc
Confidence 99987777666666666667999999999999999999999999999999999976532 224667778
Q ss_pred cccCCceEEEEecCCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccC--CCcEEEEecCCCe
Q 020659 172 ECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELE--GVKVKIAAAGFLH 249 (323)
Q Consensus 172 ~~~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~--~~~i~~i~~g~~~ 249 (323)
..+..++|++++||.+|+++++++++||+||-..||+||+.. +.++..|+.++.++ ..-...+.||+..
T Consensus 223 ~~~dgvqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaE---------qKDEmvpRlik~Fd~~~rg~~~~~~g~t~ 293 (443)
T KOG1427|consen 223 ASLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAE---------QKDEMVPRLIKVFDRNNRGPPNAILGYTG 293 (443)
T ss_pred ccccceeeEEEeccCcceeeecCCccEEEecccccccccccc---------chhhHHHHHHHHhcCCCCCCcceeeeccc
Confidence 888899999999999999999999999999999999999988 78888999887543 3457789999999
Q ss_pred eEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecCCC--CeeEEEecCCeeEEEEcCCCEEEeeCCCCCccCC
Q 020659 250 SACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLP--YSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGI 322 (323)
Q Consensus 250 ~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~~~--~i~~v~~G~~~~~~l~~~g~v~~~G~n~~gqLG~ 322 (323)
++++.+-|.||.||.+.. ..++...|.++..+. ++..+.|+..|.++-. |.+..+||...+|.++-
T Consensus 294 Sl~v~e~G~Lf~~g~~k~------~ge~~mypkP~~dlsgwnl~~~~~~~~h~~v~a-d~s~i~wg~~~~g~~lg 361 (443)
T KOG1427|consen 294 SLNVAEGGQLFMWGKIKN------NGEDWMYPKPMMDLSGWNLRWMDSGSMHHFVGA-DSSCISWGHAQYGELLG 361 (443)
T ss_pred ceeecccceeEEeecccc------CcccccCCCchhhcCCccCCCcCccceeeeecc-ccccccccccccccccc
Confidence 999999999999998872 336677777777776 5799999999877654 55789999988877654
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=2.3e-37 Score=257.36 Aligned_cols=281 Identities=26% Similarity=0.410 Sum_probs=234.6
Q ss_pred ccCcceEEEeeCCCCCCCCCCC---CCCeeceeEeccCCCCceEEEEeC--ccceEEEEcCCcEEEEeCCCCccccCCCC
Q 020659 34 TLQRRFAALWGNGDYGRLGLGS---LESRWRPVVCSAFEKHSLKALACG--GAHTLFLTETGCVYATGLNDFGQLGISEN 108 (323)
Q Consensus 34 ~~~~~~v~~~G~n~~gqlG~~~---~~~~~~p~~v~~~~~~~i~~v~~g--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~ 108 (323)
+..-+++..+|.-..-+.|.-+ ..+...|.++..+.+.+|+-|++| .-|+++|+-+|+.|+||+|..||||.+ +
T Consensus 16 e~~~g~ml~~g~v~wd~tgkRd~~~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhg-D 94 (443)
T KOG1427|consen 16 EEKGGEMLFCGAVAWDITGKRDGAMEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHG-D 94 (443)
T ss_pred hcCCccEEEeccchhhhhcccccccccccccceeccccccceEEEEecccchhhEEEEecccceeecccCccCccCcc-c
Confidence 4456677777877665555543 235678999998888899999887 678999999999999999999999999 6
Q ss_pred CCceecceEecCCCC-ceEEEEcCCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEecCCC
Q 020659 109 IGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFE 187 (323)
Q Consensus 109 ~~~~~~p~~~~~~~~-~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~ 187 (323)
......|+.|+.+.. +|++.+||++|+++||++|++|+||.|.+||||.+.........|.. .....+|+.|+||.+
T Consensus 95 ~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~~~~--~~~~~~v~~v~cga~ 172 (443)
T KOG1427|consen 95 MKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVESTPLP--CVVSDEVTNVACGAD 172 (443)
T ss_pred hhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccccccccCCCc--cccCccceeeccccc
Confidence 667788999999877 99999999999999999999999999999999998876643333222 223347999999999
Q ss_pred eEEEEECCCCEEEEeCCCCCCcCCCCCCCcccc-----ccccccccceeecccCCCcEEEEecCCCeeEEEecCCcEEEE
Q 020659 188 QSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF-----LRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIF 262 (323)
Q Consensus 188 ~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~-----~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~ly~w 262 (323)
+++.|+..+.+..+|.-.|||||++.++...-- ..-...+.|..+..++...|++++||.+|+++++++++||.|
T Consensus 173 ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd~nkrVysW 252 (443)
T KOG1427|consen 173 FTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVAVDKNKRVYSW 252 (443)
T ss_pred eEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCccccccccceeeEEEeccCcceeeecCCccEEEe
Confidence 999999999999999999999999875543210 111224456677788899999999999999999999999999
Q ss_pred eCCCCCcCCcCCCCCcCCCeeecCCCC----eeEEEecCCeeEEEEcCCCEEEeeCCCC
Q 020659 263 GDRAVDKMLFQEGNHARRPSLISKLPY----SEEVVCGGYHTCVLTSGGELYTWGSNEN 317 (323)
Q Consensus 263 G~n~~gqlg~~~~~~~~~p~~v~~~~~----i~~v~~G~~~~~~l~~~g~v~~~G~n~~ 317 (323)
|..-+|+||+.+..+...|.+|..++. ...+.||+..++++.+-|.+|.||.+..
T Consensus 253 GFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~ 311 (443)
T KOG1427|consen 253 GFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKN 311 (443)
T ss_pred ccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeecccc
Confidence 999999999998888888888877663 6789999999999999999999997653
No 5
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.96 E-value=2e-29 Score=233.63 Aligned_cols=273 Identities=27% Similarity=0.379 Sum_probs=215.7
Q ss_pred EEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCC--CCceEEEEeCccceEEEEcCCcEEEEeCCCCccccCCC
Q 020659 30 WISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFE--KHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISE 107 (323)
Q Consensus 30 ~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~--~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~ 107 (323)
.....+...+||+||.|....||.++......|..+..|. +.=+.||+.+..|++|+++.|+||+||.+..|+||.+
T Consensus 134 i~~~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~g- 212 (1267)
T KOG0783|consen 134 IHPVLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFG- 212 (1267)
T ss_pred cccccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcC-
Confidence 3333445678999999999999999999999999999884 3457799999999999999999999999999999999
Q ss_pred CCCceecceEecCCC-CceEEEEcCCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEeccc--CCc-eEEEEe
Q 020659 108 NIGYSLEPLRISGLK-KEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECL--SGI-FTKQAA 183 (323)
Q Consensus 108 ~~~~~~~p~~~~~~~-~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~--~~~-~i~~i~ 183 (323)
.....+.|.+++.+. .++.+|++...|+++||++|.||+||.|.+.|||..+.+.+ ...|..+... .+. .|+.|+
T Consensus 213 deq~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~-~~~p~qI~a~r~kg~~~iIgva 291 (1267)
T KOG0783|consen 213 DEQYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELK-KDDPIQITARRIKGFKQIIGVA 291 (1267)
T ss_pred cccccccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhh-cCchhhhhhHhhcchhhhhhhh
Confidence 667778899999864 49999999999999999999999999999999998776542 3344444321 122 599999
Q ss_pred cCCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCCCeeEEEecCCcEEEEe
Q 020659 184 LGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFG 263 (323)
Q Consensus 184 ~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~ly~wG 263 (323)
||..|+++-+.. .||+||.| .||||..++ ......|+.+..+. ..|.-++|....+++++.++.+|++-
T Consensus 292 Ag~~hsVawt~~-~VY~wGlN-~GQlGi~~n--------~~~Vt~Pr~l~~~~-~~v~~v~a~~~ATVc~~~~~~i~~~a 360 (1267)
T KOG0783|consen 292 AGKSHSVAWTDT-DVYSWGLN-NGQLGISDN--------ISVVTTPRRLAGLL-SPVIHVVATTRATVCLLQNNSIIAFA 360 (1267)
T ss_pred cccceeeeeecc-eEEEeccc-CceecCCCC--------Cceeecchhhcccc-cceEEEEecCccEEEEecCCcEEEEe
Confidence 999999999987 79999998 699998775 44556776554433 37999999999999999999999988
Q ss_pred CCCCCcCCcCCCCCcCCCeeecCC------CCeeEEEecCCeeEEEEcCCCEEEeeCCCC
Q 020659 264 DRAVDKMLFQEGNHARRPSLISKL------PYSEEVVCGGYHTCVLTSGGELYTWGSNEN 317 (323)
Q Consensus 264 ~n~~gqlg~~~~~~~~~p~~v~~~------~~i~~v~~G~~~~~~l~~~g~v~~~G~n~~ 317 (323)
+..+..+- ...+......|..- .++.+..+.....++|++-|+||+|-+++.
T Consensus 361 dy~~~k~~--~n~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns 418 (1267)
T KOG0783|consen 361 DYNQVKLP--FNVDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNS 418 (1267)
T ss_pred cccceecC--cchhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCC
Confidence 65543332 11122222222211 135677777788899999999999987764
No 6
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.96 E-value=1.5e-28 Score=235.94 Aligned_cols=290 Identities=18% Similarity=0.290 Sum_probs=224.1
Q ss_pred HHhhhhhhhhhhcccccceeeeEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeCccceEEEE
Q 020659 8 AMTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLT 87 (323)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g~~~~~~lt 87 (323)
...+|++.+-.+..+.++...-+++..+++|+||.-|... .+|.-..........++ .+|++|+.|-+...|+.
T Consensus 468 qL~e~L~~~~~~qtv~L~~~RE~A~iqa~sGKvYYaGn~t--~~Gl~e~G~nWmEL~l~----~~IVq~SVG~D~~~~~~ 541 (3738)
T KOG1428|consen 468 QLPEFLPANLHPQTVDLHFTREMAFIQARSGKVYYAGNGT--RFGLFETGNNWMELCLP----EPIVQISVGIDTIMFRS 541 (3738)
T ss_pred hchhhhccccCchheecccchhhhhhhhcCccEEEecCcc--EEeEEccCCceEEecCC----CceEEEEeccchhheee
Confidence 3457777888888888888777888788999999999886 45665444444444433 57999999999988888
Q ss_pred cCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcCCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCccccc
Q 020659 88 ETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPI 167 (323)
Q Consensus 88 ~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~ 167 (323)
-.|.=|.+-..+. +..-..-+.++....+|+++.+...-.-.+.++|++|+.|.... +....
T Consensus 542 ~A~~G~I~~v~D~--------k~~~~~Rr~~P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm----------~~n~S 603 (3738)
T KOG1428|consen 542 GAGHGWIASVDDK--------KRNGRLRRLVPSNRRKIVHVCASGHVYGYVSENGKIFMGGLHTM----------RVNVS 603 (3738)
T ss_pred ccCcceEEeccCc--------ccccchhhcCCCCcceeEEEeeeeEEEEEEccCCeEEeecceeE----------Eecch
Confidence 7776555543322 11112233344445599999888877788999999999997531 11233
Q ss_pred ceEecccCCceEEEEecCCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCcccc---------------------------
Q 020659 168 PTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF--------------------------- 220 (323)
Q Consensus 168 p~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~--------------------------- 220 (323)
..++..+++.-|.+++.|..|.++++.+|.||.||-|+.+|+|+-++.+...+
T Consensus 604 Sqmln~L~~~~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VC 683 (3738)
T KOG1428|consen 604 SQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVC 683 (3738)
T ss_pred HHHhhccccceeehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchh
Confidence 44667788888999999999999999999999999999999999542221111
Q ss_pred ---------------------------------------------------------------ccccccccceeec---c
Q 020659 221 ---------------------------------------------------------------LRSTSEYTPRLIK---E 234 (323)
Q Consensus 221 ---------------------------------------------------------------~~~~~~~~p~~i~---~ 234 (323)
.+++....|..+. .
T Consensus 684 a~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~ 763 (3738)
T KOG1428|consen 684 AQCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQG 763 (3738)
T ss_pred hhcccccccccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccC
Confidence 2233333444332 2
Q ss_pred cCCCcEEEEecCCCeeEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecCCCC--eeEEEecCCeeEEEEcCCCEEEe
Q 020659 235 LEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPY--SEEVVCGGYHTCVLTSGGELYTW 312 (323)
Q Consensus 235 ~~~~~i~~i~~g~~~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~~~~--i~~v~~G~~~~~~l~~~g~v~~~ 312 (323)
..+.++.+|+||..|+++|.+|++||.+|+|.+||||.+++.+...|++|..+.+ +++|++|.+|++++..||.||++
T Consensus 764 ~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTF 843 (3738)
T KOG1428|consen 764 PHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTF 843 (3738)
T ss_pred CcceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEe
Confidence 3356899999999999999999999999999999999999999999999887775 89999999999999999999999
Q ss_pred eCCCCCccC
Q 020659 313 GSNENGCLG 321 (323)
Q Consensus 313 G~n~~gqLG 321 (323)
|.-..||||
T Consensus 844 GaF~KGQL~ 852 (3738)
T KOG1428|consen 844 GAFGKGQLA 852 (3738)
T ss_pred ccccCcccc
Confidence 999999997
No 7
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.93 E-value=9.2e-25 Score=202.90 Aligned_cols=265 Identities=21% Similarity=0.307 Sum_probs=204.1
Q ss_pred ccccceeeeEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeCccceEEEEcCCcEEEEeCCCC
Q 020659 21 GSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDF 100 (323)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~ 100 (323)
.+.++..|.++++ ..|+||++|.+.-|+||.++......|.+++.+.+.++.+|+....|+++||.+|-||+||.|.+
T Consensus 181 qV~l~kfHSvfl~--~kgqvY~cGhG~GGRlG~gdeq~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~ 258 (1267)
T KOG0783|consen 181 QVQLSKFHSVFLT--EKGQVYVCGHGAGGRLGFGDEQYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGS 258 (1267)
T ss_pred HHHHhhceeeEec--CCCcEEEeccCCCCccCcCcccccccccccccccccceEEEEeecceeEEEeecceEEEeecCcc
Confidence 3788999999999 78889999999999999998888999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCceecceEecCCCC----ceEEEEcCCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCC
Q 020659 101 GQLGISENIGYSLEPLRISGLKK----EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSG 176 (323)
Q Consensus 101 gqlg~~~~~~~~~~p~~~~~~~~----~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~ 176 (323)
+|||..+....-..|.++..... .|+.++||..|+++-++. -||.||.| .||||..+. .+...+|+.+... .
T Consensus 259 hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg~~hsVawt~~-~VY~wGlN-~GQlGi~~n-~~~Vt~Pr~l~~~-~ 334 (1267)
T KOG0783|consen 259 HQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAGKSHSVAWTDT-DVYSWGLN-NGQLGISDN-ISVVTTPRRLAGL-L 334 (1267)
T ss_pred cccCCcCchhhcCchhhhhhHhhcchhhhhhhhcccceeeeeecc-eEEEeccc-CceecCCCC-Cceeecchhhccc-c
Confidence 99999987776667766664322 799999999999999865 59999998 699998877 4457788776443 4
Q ss_pred ceEEEEecCCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeec----ccCCCcEEEEecCCCeeEE
Q 020659 177 IFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIK----ELEGVKVKIAAAGFLHSAC 252 (323)
Q Consensus 177 ~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~----~~~~~~i~~i~~g~~~~~~ 252 (323)
.++..|.|...-++++++++.+|++-+ |.|.-...+ .....-..+. .+....+++..+.....++
T Consensus 335 ~~v~~v~a~~~ATVc~~~~~~i~~~ad--y~~~k~~~n---------~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~ 403 (1267)
T KOG0783|consen 335 SPVIHVVATTRATVCLLQNNSIIAFAD--YNQVKLPFN---------VDFLKSLKVTGGPLSLTRFNVRKLLASENKLLV 403 (1267)
T ss_pred cceEEEEecCccEEEEecCCcEEEEec--ccceecCcc---------hhccceeEEecCccchhhhhhhhcchhhhheee
Confidence 579999999999999999999999864 222211110 0000111111 0112356777888888999
Q ss_pred EecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecCCCCeeEEEecCCeeEEEEcCCCEE
Q 020659 253 IDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELY 310 (323)
Q Consensus 253 lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~~~~i~~v~~G~~~~~~l~~~g~v~ 310 (323)
+|+-|+||.|-+++... +.....|.++- .|.+|+---+..+++++||..|
T Consensus 404 lte~g~Vy~w~s~ns~~-----~~c~ftp~r~~---~isdIa~~~N~~~~~t~dGc~~ 453 (1267)
T KOG0783|consen 404 LTELGEVYEWDSKNSTR-----TSCKFTPLRIF---EISDIAWTANSLILCTRDGCWK 453 (1267)
T ss_pred eccCCeEEEEecCCCce-----eeeecccceee---ehhhhhhccceEEEEecCccee
Confidence 99999999999876321 13334444333 3456666668899999999443
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.88 E-value=2.1e-21 Score=187.56 Aligned_cols=244 Identities=19% Similarity=0.306 Sum_probs=180.7
Q ss_pred hhhcccccceeeeEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeCccceEEEEcCCcEEEEe
Q 020659 17 DIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATG 96 (323)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G 96 (323)
..++.++.|....++.....+|-++.-|... ......++......+|+.|.+...---.+.++|++|..|
T Consensus 525 ~~IVq~SVG~D~~~~~~~A~~G~I~~v~D~k----------~~~~~Rr~~P~n~rKIv~v~~s~~VY~~vSenGkifM~G 594 (3738)
T KOG1428|consen 525 EPIVQISVGIDTIMFRSGAGHGWIASVDDKK----------RNGRLRRLVPSNRRKIVHVCASGHVYGYVSENGKIFMGG 594 (3738)
T ss_pred CceEEEEeccchhheeeccCcceEEeccCcc----------cccchhhcCCCCcceeEEEeeeeEEEEEEccCCeEEeec
Confidence 3445667777777777767777777666443 111222223334457888877766667889999999998
Q ss_pred CCCCccccCCCCCCceecceEecCCCC-ceEEEEcCCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcc-----------
Q 020659 97 LNDFGQLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKV----------- 164 (323)
Q Consensus 97 ~n~~gqlg~~~~~~~~~~p~~~~~~~~-~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~----------- 164 (323)
.... ......+.+..++. .|.+++.|..|.++++.+|+||+||-|..+|+|.-.+....
T Consensus 595 ~~tm---------~~n~SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~ 665 (3738)
T KOG1428|consen 595 LHTM---------RVNVSSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEY 665 (3738)
T ss_pred ceeE---------EecchHHHhhccccceeehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceee
Confidence 6421 11123344555655 78899999999999999999999999999999874221100
Q ss_pred -------------------------------------------------------------------------------c
Q 020659 165 -------------------------------------------------------------------------------I 165 (323)
Q Consensus 165 -------------------------------------------------------------------------------~ 165 (323)
.
T Consensus 666 ~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~st 745 (3738)
T KOG1428|consen 666 QICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSST 745 (3738)
T ss_pred cccCCccceeecCCcchhhhcccccccccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheeccc
Confidence 0
Q ss_pred ccceE-------ec---ccCCceEEEEecCCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeeccc
Q 020659 166 PIPTK-------VE---CLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKEL 235 (323)
Q Consensus 166 ~~p~~-------~~---~~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~ 235 (323)
..|++ +. ..-+.++.+|+||.+|+++|-+|++||.||.|.+||||.++ ......|+++..+
T Consensus 746 aa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GD---------t~Sk~~Pq~V~~~ 816 (3738)
T KOG1428|consen 746 AAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGD---------TLSKNTPQQVILP 816 (3738)
T ss_pred ccccccccCchheeeccCCcceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCc---------cccCCCcceEEcC
Confidence 12222 21 11256799999999999999999999999999999999999 5677789999888
Q ss_pred CCCcEEEEecCCCeeEEEecCCcEEEEeCCCCCcCCcCCCCC---cCCCeeecCCC
Q 020659 236 EGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNH---ARRPSLISKLP 288 (323)
Q Consensus 236 ~~~~i~~i~~g~~~~~~lt~~g~ly~wG~n~~gqlg~~~~~~---~~~p~~v~~~~ 288 (323)
++-.+++|++|++|++++..||+||.+|.-..|||+....+. ...|.+++.+.
T Consensus 817 ~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~~e~~~WNA~Pe~v~~~G 872 (3738)
T KOG1428|consen 817 SDTVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLARPAGEKAGWNAIPEKVSGFG 872 (3738)
T ss_pred CCCceEEEecCCCceEEEecCCcEEEeccccCccccCccccccccccCCCcCCCCC
Confidence 888899999999999999999999999999999999765432 34566666554
No 9
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.33 E-value=2.3e-12 Score=82.60 Aligned_cols=50 Identities=32% Similarity=0.531 Sum_probs=47.3
Q ss_pred cceEEEeeCCCCCCCC-CCCCCCeeceeEeccCCCCceEEEEeCccceEEE
Q 020659 37 RRFAALWGNGDYGRLG-LGSLESRWRPVVCSAFEKHSLKALACGGAHTLFL 86 (323)
Q Consensus 37 ~~~v~~~G~n~~gqlG-~~~~~~~~~p~~v~~~~~~~i~~v~~g~~~~~~l 86 (323)
+|+||+||.|.+|||| ..+......|.++..+.+.+|++|+||..|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 5889999999999999 8888889999999999999999999999999987
No 10
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.25 E-value=1e-11 Score=79.53 Aligned_cols=50 Identities=44% Similarity=0.772 Sum_probs=44.2
Q ss_pred CCcEEEEeCCCCCCCC-CCCCCCcccccceEecccCCceEEEEecCCCeEEEE
Q 020659 141 DGELYMWGKNSNGQLG-LGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAV 192 (323)
Q Consensus 141 ~g~v~~~G~n~~gqlg-~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~~~~l 192 (323)
||+||+||.|.+|||| ..... ....|.+++.+.+.+|++|+||.+|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~--~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNK--NVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSS--EEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCC--ceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6899999999999999 44433 47899999999999999999999999987
No 11
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.25 E-value=1.1e-11 Score=69.36 Aligned_cols=30 Identities=57% Similarity=1.237 Sum_probs=26.0
Q ss_pred eeEEEecCCeeEEEEcCCCEEEeeCCCCCc
Q 020659 290 SEEVVCGGYHTCVLTSGGELYTWGSNENGC 319 (323)
Q Consensus 290 i~~v~~G~~~~~~l~~~g~v~~~G~n~~gq 319 (323)
|++|+||.+|+++|+++|+||+||.|++||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 689999999999999999999999999998
No 12
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.20 E-value=2.6e-11 Score=67.88 Aligned_cols=30 Identities=33% Similarity=0.540 Sum_probs=26.0
Q ss_pred EEEEecCCCeEEEEECCCCEEEEeCCCCCC
Q 020659 179 TKQAALGFEQSVAVTGGGKVLSWGAGGSGR 208 (323)
Q Consensus 179 i~~i~~g~~~~~~l~~~g~v~~~G~n~~gq 208 (323)
|++|+||.+|+++|+++|+||+||.|++||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999987
No 13
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=5.5e-12 Score=119.36 Aligned_cols=171 Identities=34% Similarity=0.499 Sum_probs=132.1
Q ss_pred ceEEEEcCCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEecCCCeEEEEEC-------CC
Q 020659 124 EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTG-------GG 196 (323)
Q Consensus 124 ~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~~~~l~~-------~g 196 (323)
+|.+++||.+|+++++..|+++.||.|.+||++.+.... ... |..++.+.+.+...|+||..|+++++. +|
T Consensus 15 ~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~-~~~-p~~~~sl~g~p~a~v~~g~~hs~~lS~~~~~lt~e~ 92 (850)
T KOG0941|consen 15 HILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFP-DAK-PEPVESLKGVPLAQVSAGEAHSFALSSHTVLLTDEG 92 (850)
T ss_pred hhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCC-CCC-CccchhhcCCcHHHHhcCCCcchhhhhchhhcchhc
Confidence 799999999999999999999999999999999983333 233 889999999999999999999888766 99
Q ss_pred CEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCCCeeEEE-ecCCcEEEEeCCCCCcCCcCCC
Q 020659 197 KVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACI-DENGRVYIFGDRAVDKMLFQEG 275 (323)
Q Consensus 197 ~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~l-t~~g~ly~wG~n~~gqlg~~~~ 275 (323)
.++.+|+...||+|+.. ......|..+..+-+..+..|+|+..|+.+. ..-|+.|..|.+..|. +..
T Consensus 93 ~~fs~Ga~~~~q~~h~~---------~~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sGk---~~i 160 (850)
T KOG0941|consen 93 KVFSFGAGSTGQLGHSL---------TENEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASGK---GVI 160 (850)
T ss_pred cccccCCcccccccccc---------cccccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCCC---cee
Confidence 99999999999999954 4556677777767777899999999999776 4568999999888660 000
Q ss_pred CCcCCCeeecCCC-----CeeEEEecCCeeEEEEcCCC
Q 020659 276 NHARRPSLISKLP-----YSEEVVCGGYHTCVLTSGGE 308 (323)
Q Consensus 276 ~~~~~p~~v~~~~-----~i~~v~~G~~~~~~l~~~g~ 308 (323)
.....+.+....+ .+..+.+|++.+..+...++
T Consensus 161 ~s~s~~~~l~~~d~~~~~~~~~~~~g~dq~~~l~~~~~ 198 (850)
T KOG0941|consen 161 VSLSGEDLLRDHDSEKDHRCSLAFAGGDQTFSLSSKGE 198 (850)
T ss_pred eccchhhhcccccHHHHHHHHHHhcCCCceEEEEeecc
Confidence 1111111111111 25567888888888876653
No 14
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=2.1e-11 Score=115.49 Aligned_cols=142 Identities=23% Similarity=0.412 Sum_probs=117.2
Q ss_pred ceEecccCCceEEEEecCCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCC
Q 020659 168 PTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF 247 (323)
Q Consensus 168 p~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~ 247 (323)
|.++..+.-.++.+++||.+|+++++..|++++||.|.+||+|++.. ..+.. |..++.+.+.....|++|.
T Consensus 5 ~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~--------~~~~~-p~~~~sl~g~p~a~v~~g~ 75 (850)
T KOG0941|consen 5 PRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALY--------FPDAK-PEPVESLKGVPLAQVSAGE 75 (850)
T ss_pred hHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhcc--------CCCCC-CccchhhcCCcHHHHhcCC
Confidence 33444444457999999999999999999999999999999999842 22333 8888888888999999999
Q ss_pred CeeEEEec-------CCcEEEEeCCCCCcCCcCCCCCcCCCeeecCCC--CeeEEEecCCeeEEEE-cCCCEEEeeCCCC
Q 020659 248 LHSACIDE-------NGRVYIFGDRAVDKMLFQEGNHARRPSLISKLP--YSEEVVCGGYHTCVLT-SGGELYTWGSNEN 317 (323)
Q Consensus 248 ~~~~~lt~-------~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~~~--~i~~v~~G~~~~~~l~-~~g~v~~~G~n~~ 317 (323)
.|++++.. +|.++.+|...++|+|.+.......|..+...- .+..++||-.|++++- .-|++|..|.+..
T Consensus 76 ~hs~~lS~~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~s 155 (850)
T KOG0941|consen 76 AHSFALSSHTVLLTDEGKVFSFGAGSTGQLGHSLTENEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGAS 155 (850)
T ss_pred CcchhhhhchhhcchhccccccCCcccccccccccccccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCC
Confidence 99887766 999999999999999997667767776665443 5999999999998865 5699999998887
Q ss_pred C
Q 020659 318 G 318 (323)
Q Consensus 318 g 318 (323)
|
T Consensus 156 G 156 (850)
T KOG0941|consen 156 G 156 (850)
T ss_pred C
Confidence 6
No 15
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=95.68 E-value=1.1 Score=42.31 Aligned_cols=108 Identities=19% Similarity=0.199 Sum_probs=70.3
Q ss_pred eCccceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcCC-CeEEEEEcCCcEE-EEeCCCCCCC
Q 020659 78 CGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY-HHSSAITVDGELY-MWGKNSNGQL 155 (323)
Q Consensus 78 ~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g~-~~~~~lt~~g~v~-~~G~n~~gql 155 (323)
.|.....+|.++|.+|. +-|.....+....-+.+.... +..+|++|. ....+|+.+|.|+ .-|-.++++.
T Consensus 190 ~g~~~awAI~s~Gd~y~-------RtGvs~~~P~GraW~~i~~~t-~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~ 261 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYL-------RTGVSVDRPCGRAWKVICPYT-DLSQISAGPTGVVWAVTENGAVFYREGVSRQNPE 261 (705)
T ss_pred CCceEEEEEecCCcEEE-------eccccCCCCCCceeeecCCCC-ccceEeecCcceEEEEeeCCcEEEEecccccCCC
Confidence 45556678888888886 334333332222222222212 788999999 8888999999865 5666666666
Q ss_pred CCCCCCCcccccceEecccCCceEEEEecCCCeEEEEECCCCEEEE
Q 020659 156 GLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSW 201 (323)
Q Consensus 156 g~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~~ 201 (323)
|..=. ...+|... ..++.|+.|....-+|+++|.||.=
T Consensus 262 GdsWk---dI~tP~~a-----~~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 262 GDSWK---DIVTPRQA-----LEPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred Cchhh---hccCcccc-----cceEEEEeccceEEEEecCCcEEEE
Confidence 53211 12333332 1399999999999999999999863
No 16
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.001 Score=66.47 Aligned_cols=134 Identities=19% Similarity=0.140 Sum_probs=93.0
Q ss_pred ceEEEEcCCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEec-ccCCceEEEEecCCCeEEEEECCCCEEEEe
Q 020659 124 EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVE-CLSGIFTKQAALGFEQSVAVTGGGKVLSWG 202 (323)
Q Consensus 124 ~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~-~~~~~~i~~i~~g~~~~~~l~~~g~v~~~G 202 (323)
+++.|.+-.+..++|..+|++|.|-+.+..-|...-...+....|..-. .+.+.+|+.+++..-.+-++|++|+|.+|=
T Consensus 375 ~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlasWl 454 (3015)
T KOG0943|consen 375 KFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLASWL 454 (3015)
T ss_pred eeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhhHH
Confidence 8999999999999999999999999987766654434444444444332 445678999999999999999999999994
Q ss_pred CCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCCCeeEEEecCCcEEEEeCCCCCc
Q 020659 203 AGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDK 269 (323)
Q Consensus 203 ~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~ly~wG~n~~gq 269 (323)
+. +|.+-.-. .....-+++ ...++.+++.-|...|.++...|..+|-||--...|
T Consensus 455 DE----cgagV~fk-------La~ea~Tki-eed~~maVqd~~~adhlaAf~~dniihWcGiVPf~e 509 (3015)
T KOG0943|consen 455 DE----CGAGVAFK-------LAHEAQTKI-EEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPFSE 509 (3015)
T ss_pred hh----hhhhhhhh-------hhhhhhhhh-hhhhHHHHHHHHHHHHHHHHhhhceeeEEeeeeehh
Confidence 32 22221100 000001111 234456777788899999999999999999655443
No 17
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=92.96 E-value=10 Score=37.40 Aligned_cols=243 Identities=18% Similarity=0.084 Sum_probs=118.4
Q ss_pred cccceeeeEEecccCcceEEEeeCCCCCCCCCCCCCC-eeceeEeccCCCCceEEEEeCccceEEE--EcCCcEEEEeCC
Q 020659 22 SKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLES-RWRPVVCSAFEKHSLKALACGGAHTLFL--TETGCVYATGLN 98 (323)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~-~~~p~~v~~~~~~~i~~v~~g~~~~~~l--t~~g~v~~~G~n 98 (323)
.+++....-.++....|...++|...-|||..=+-.. .+..++--.+ ..+..++-..+-.++. -+||+|=.|-..
T Consensus 303 LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~--~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~ 380 (893)
T KOG0291|consen 303 LSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHS--DRITSLAYSPDGQLIATGAEDGKVKVWNTQ 380 (893)
T ss_pred eecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccc--cceeeEEECCCCcEEEeccCCCcEEEEecc
Confidence 3444444444555577889999999988888643221 1111111111 1345554444433333 357777777554
Q ss_pred CCccccCCCCCCceecceEecCCCC--ceEEEEcCCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCC
Q 020659 99 DFGQLGISENIGYSLEPLRISGLKK--EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSG 176 (323)
Q Consensus 99 ~~gqlg~~~~~~~~~~p~~~~~~~~--~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~ 176 (323)
+.-+ ...+..... ..++.+.-.+..+...=||+|.+|--.+|-..- ....|.+
T Consensus 381 SgfC------------~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfR-------Tft~P~p------ 435 (893)
T KOG0291|consen 381 SGFC------------FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFR-------TFTSPEP------ 435 (893)
T ss_pred CceE------------EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceee-------eecCCCc------
Confidence 3211 111111111 556667777777777889999999876543221 1122222
Q ss_pred ceEEEEecCCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCC--CcEEEEecCCCeeEEEe
Q 020659 177 IFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEG--VKVKIAAAGFLHSACID 254 (323)
Q Consensus 177 ~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~--~~i~~i~~g~~~~~~lt 254 (323)
++.+ +++++..|.|.+.|.-+.-.. . .-...+-+.+..+.+ .+|..++....-..+.+
T Consensus 436 ---~Qfs-----cvavD~sGelV~AG~~d~F~I----------f--vWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS 495 (893)
T KOG0291|consen 436 ---IQFS-----CVAVDPSGELVCAGAQDSFEI----------F--VWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLAS 495 (893)
T ss_pred ---eeee-----EEEEcCCCCEEEeeccceEEE----------E--EEEeecCeeeehhcCCCCcceeeEEccccCeEEe
Confidence 2222 255555666666553221000 0 000001111111111 12333222222222221
Q ss_pred --cCCcEEEEeCCCCCcCCcCCCCCcCCCeeecCCCCeeEEEec--CCeeEEEEcCCCEEEeeCCCCCccC
Q 020659 255 --ENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCG--GYHTCVLTSGGELYTWGSNENGCLG 321 (323)
Q Consensus 255 --~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~~~~i~~v~~G--~~~~~~l~~~g~v~~~G~n~~gqLG 321 (323)
=|..|-.|-.-. ...+-..++...++..|+.- +...++.|-||+|--|-.++..|+|
T Consensus 496 ~SWDkTVRiW~if~----------s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~ 556 (893)
T KOG0291|consen 496 GSWDKTVRIWDIFS----------SSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVG 556 (893)
T ss_pred ccccceEEEEEeec----------cCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeec
Confidence 133344443221 01111223334467777766 7788999999999999999988885
No 18
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=92.79 E-value=2.1 Score=40.62 Aligned_cols=70 Identities=17% Similarity=0.097 Sum_probs=53.5
Q ss_pred cEEEEecCC-CeeEEEecCCcEEE-EeCCCCCcCCcCCCCCcCCCeeecCCCCeeEEEecCCeeEEEEcCCCEEEe
Q 020659 239 KVKIAAAGF-LHSACIDENGRVYI-FGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTW 312 (323)
Q Consensus 239 ~i~~i~~g~-~~~~~lt~~g~ly~-wG~n~~gqlg~~~~~~~~~p~~v~~~~~i~~v~~G~~~~~~l~~~g~v~~~ 312 (323)
++..|++|. ....+++.+|.||. -|-..+.+.|..-. ++.+|..... ++.|+.|....-+|+.+|.+|--
T Consensus 228 ~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~GdsWk-dI~tP~~a~~---~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 228 DLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEGDSWK-DIVTPRQALE---PVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred ccceEeecCcceEEEEeeCCcEEEEecccccCCCCchhh-hccCcccccc---eEEEEeccceEEEEecCCcEEEE
Confidence 588999999 67789999999765 68777777765433 4555544322 88999998888999999999853
No 19
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=92.55 E-value=0.65 Score=49.22 Aligned_cols=108 Identities=11% Similarity=0.070 Sum_probs=64.3
Q ss_pred ccCCceEEEEe-cCCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceee--cccCCCcEEEEecCCCe
Q 020659 173 CLSGIFTKQAA-LGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLI--KELEGVKVKIAAAGFLH 249 (323)
Q Consensus 173 ~~~~~~i~~i~-~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i--~~~~~~~i~~i~~g~~~ 249 (323)
.+++..|..++ .+.+++++|++.|++-..- ....|..+ +.+++ +|++++.=..|
T Consensus 699 Gl~~~~i~a~Avv~~~~fvald~qg~lt~h~----------------------k~g~p~~l~~~gl~G-~ik~l~lD~~~ 755 (1774)
T PF11725_consen 699 GLEDRVITAFAVVNDNKFVALDDQGDLTAHQ----------------------KPGRPVPLSRPGLSG-EIKDLALDEKQ 755 (1774)
T ss_pred CCCcCcceeEEEEcCCceEEeccCCcccccc----------------------CCCCCccCCCCCCCc-chhheeecccc
Confidence 34444455554 3667888888888775431 11123333 34544 79999998775
Q ss_pred e-EEEecCCcEEE-----EeCCCCCcCCcCCCCCcCCCeeecCCCCeeEEEecCCeeEEEEcCC
Q 020659 250 S-ACIDENGRVYI-----FGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGG 307 (323)
Q Consensus 250 ~-~~lt~~g~ly~-----wG~n~~gqlg~~~~~~~~~p~~v~~~~~i~~v~~G~~~~~~l~~~g 307 (323)
. +++|.+|+||+ |=.+..+- .....-.|+.+|.-..+..+....+|.+.+.-++
T Consensus 756 nL~Alt~~G~Lf~~~k~~WQ~~~~~~----~~~~~W~~v~lP~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 756 NLYALTSTGELFRLPKEAWQGNAEGD----QMAAKWQKVALPDEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred ceeEecCCCceeecCHHHhhCcccCC----ccccCceeccCCCCCchhhhhcCCCCceEEEecC
Confidence 5 88999999997 43333220 0112333444444446888888888887776443
No 20
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=92.25 E-value=6.1 Score=33.09 Aligned_cols=106 Identities=10% Similarity=0.103 Sum_probs=51.3
Q ss_pred ceEEEEeCcc-ceEEEEc-CCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcCC-CeEEEEEc-CCcEEEE
Q 020659 72 SLKALACGGA-HTLFLTE-TGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY-HHSSAITV-DGELYMW 147 (323)
Q Consensus 72 ~i~~v~~g~~-~~~~lt~-~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g~-~~~~~lt~-~g~v~~~ 147 (323)
.|..+..... ..++... +|.|+.|-..... ....+......|..+.... ...++... +|.++.|
T Consensus 95 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 162 (289)
T cd00200 95 YVSSVAFSPDGRILSSSSRDKTIKVWDVETGK------------CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162 (289)
T ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCcE------------EEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEE
Confidence 4555555443 3344444 8889888654211 1111222233566665544 33334444 8889888
Q ss_pred eCCCCCCCCCCCCCCcccccceEecccCCceEEEEecCCC--eEEEEECCCCEEEEeC
Q 020659 148 GKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFE--QSVAVTGGGKVLSWGA 203 (323)
Q Consensus 148 G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~--~~~~l~~~g~v~~~G~ 203 (323)
-.+... ....+.. ....|..+....+ +.++...+|.+..|-.
T Consensus 163 d~~~~~-------------~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~ 206 (289)
T cd00200 163 DLRTGK-------------CVATLTG-HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDL 206 (289)
T ss_pred Eccccc-------------cceeEec-CccccceEEECCCcCEEEEecCCCcEEEEEC
Confidence 643110 0001111 1113444444333 5555566888888854
No 21
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=92.08 E-value=6.4 Score=32.96 Aligned_cols=98 Identities=7% Similarity=0.029 Sum_probs=49.4
Q ss_pred eEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeCc--cceEEEEcCCcEEEEeCCCCccccCC
Q 020659 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGG--AHTLFLTETGCVYATGLNDFGQLGIS 106 (323)
Q Consensus 29 ~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~ 106 (323)
.++++...++.++.|-..... ....+.. ....+..+.... ...++...+|.++.|-....
T Consensus 22 ~~l~~~~~~g~i~i~~~~~~~-----------~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~------ 83 (289)
T cd00200 22 KLLATGSGDGTIKVWDLETGE-----------LLRTLKG-HTGPVRDVAASADGTYLASGSSDKTIRLWDLETG------ 83 (289)
T ss_pred CEEEEeecCcEEEEEEeeCCC-----------cEEEEec-CCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc------
Confidence 455555568888888655321 1111111 112233443333 24555566899998865431
Q ss_pred CCCCceecceEecCCCCceEEEEcCCC-eEEEEEc-CCcEEEEeCC
Q 020659 107 ENIGYSLEPLRISGLKKEVVQISTGYH-HSSAITV-DGELYMWGKN 150 (323)
Q Consensus 107 ~~~~~~~~p~~~~~~~~~i~~i~~g~~-~~~~lt~-~g~v~~~G~n 150 (323)
.....+......|..+..... ..++... +|+++.|-..
T Consensus 84 ------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (289)
T cd00200 84 ------ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE 123 (289)
T ss_pred ------cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECC
Confidence 112222222335666655443 3444444 8899988653
No 22
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=90.01 E-value=0.052 Score=55.01 Aligned_cols=129 Identities=14% Similarity=0.078 Sum_probs=84.9
Q ss_pred CCceEEEEecCCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCcccccccccccccee-ecccCCCcEEEEecCCCeeEEE
Q 020659 175 SGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRL-IKELEGVKVKIAAAGFLHSACI 253 (323)
Q Consensus 175 ~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~-i~~~~~~~i~~i~~g~~~~~~l 253 (323)
...+++.|.+-....++|..+|++|.|-+....-+...... ....-.|.. .-.+.+.+|+.+++..-..-++
T Consensus 372 dan~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai-------~kn~dHPd~a~iG~hge~ii~lSanniR~si~ 444 (3015)
T KOG0943|consen 372 DANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAI-------NKNLDHPDAAFIGLHGEKIILLSANNIRASIA 444 (3015)
T ss_pred CCCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhc-------ccCCCCCccceecccCCeeEEeecCceeeeee
Confidence 35679999999999999999999999998776544331110 122222322 2256678999999999999999
Q ss_pred ecCCcEEEEeCCCCCcCCcC--CCCCcCCCeeecCCC-CeeEEEecCCeeEEEEcCCCEEEeeC
Q 020659 254 DENGRVYIFGDRAVDKMLFQ--EGNHARRPSLISKLP-YSEEVVCGGYHTCVLTSGGELYTWGS 314 (323)
Q Consensus 254 t~~g~ly~wG~n~~gqlg~~--~~~~~~~p~~v~~~~-~i~~v~~G~~~~~~l~~~g~v~~~G~ 314 (323)
|++|+|..|=.-. |.+ .......-+.+..-. .+++.-|-..|+++..+|..||.||-
T Consensus 445 T~nghlasWlDEc----gagV~fkLa~ea~Tkieed~~maVqd~~~adhlaAf~~dniihWcGi 504 (3015)
T KOG0943|consen 445 TENGHLASWLDEC----GAGVAFKLAHEAQTKIEEDGEMAVQDHCCADHLAAFLEDNIIHWCGI 504 (3015)
T ss_pred ecCCchhhHHhhh----hhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhceeeEEee
Confidence 9999999995322 111 111111122222111 35566666778888888999999994
No 23
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=88.54 E-value=20 Score=32.94 Aligned_cols=70 Identities=16% Similarity=0.216 Sum_probs=42.1
Q ss_pred CCCceEEEEcCCCeEEEEE--cCCcEEEEeCCCCCCCCCCCCCCcccccceEecc--cCCceEEEEecCCCeEEEE--EC
Q 020659 121 LKKEVVQISTGYHHSSAIT--VDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVEC--LSGIFTKQAALGFEQSVAV--TG 194 (323)
Q Consensus 121 ~~~~i~~i~~g~~~~~~lt--~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~--~~~~~i~~i~~g~~~~~~l--~~ 194 (323)
...+|..++...+.-++|. .+.++..|-..+. ..+++... ....-|.+.+.|.+..++. ++
T Consensus 394 e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~-------------~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSE 460 (519)
T KOG0293|consen 394 EEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN-------------KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSE 460 (519)
T ss_pred ccCceeEEEEcCCCcEEEEEcccCeeEEeecchh-------------hHHHHhhcccccceEEEeccCCCCcceEEecCC
Confidence 4458888877665555553 4677888864211 11111111 1122377778888866666 78
Q ss_pred CCCEEEEeC
Q 020659 195 GGKVLSWGA 203 (323)
Q Consensus 195 ~g~v~~~G~ 203 (323)
|++||.|-.
T Consensus 461 D~kvyIWhr 469 (519)
T KOG0293|consen 461 DSKVYIWHR 469 (519)
T ss_pred CceEEEEEc
Confidence 999999964
No 24
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.33 E-value=3.6 Score=34.69 Aligned_cols=29 Identities=14% Similarity=0.093 Sum_probs=25.1
Q ss_pred ceEEEEecCCCeEEEEECCCCEEEEeCCC
Q 020659 177 IFTKQAALGFEQSVAVTGGGKVLSWGAGG 205 (323)
Q Consensus 177 ~~i~~i~~g~~~~~~l~~~g~v~~~G~n~ 205 (323)
.+++.+.|...+.+++|++|.+|+|--..
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKK 41 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 36888999999999999999999996543
No 25
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=86.25 E-value=23 Score=34.97 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=22.8
Q ss_pred ceEEEEcCCC----eEEEEEcCCcEEEEeC
Q 020659 124 EVVQISTGYH----HSSAITVDGELYMWGK 149 (323)
Q Consensus 124 ~i~~i~~g~~----~~~~lt~~g~v~~~G~ 149 (323)
.+..++||.. .+++||..|.|.-+-.
T Consensus 219 ~f~avaCg~gicAestfait~qGhLvEFSs 248 (1080)
T KOG1408|consen 219 EFLAVACGVGICAESTFAITAQGHLVEFSS 248 (1080)
T ss_pred hhhhhhhcCcccccceEEEecccceeeech
Confidence 7888999988 9999999999988754
No 26
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=86.11 E-value=16 Score=33.84 Aligned_cols=157 Identities=13% Similarity=0.120 Sum_probs=77.3
Q ss_pred CCCceEEEEcCCCeEEEE--EcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEecCCCeEEEEECCCCE
Q 020659 121 LKKEVVQISTGYHHSSAI--TVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKV 198 (323)
Q Consensus 121 ~~~~i~~i~~g~~~~~~l--t~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v 198 (323)
++.++..+++...-.+++ +..|++|.|=-++-.-| -......++....+++--..|.+--.+||.|
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL------------~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V 147 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILL------------NVLSAHYQSITCLKFSDDGSHIITGSKDGAV 147 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHH------------HHHHhhccceeEEEEeCCCcEEEecCCCccE
Confidence 344677777766555444 57899999965421111 0011222333344444444466666788999
Q ss_pred EEEeCCCCCCcCCCCCCCccccccccccccceeeccc--CCCcEEEEecCCCe--eEEE--ecCCcEEEEeCCCCCcCCc
Q 020659 199 LSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKEL--EGVKVKIAAAGFLH--SACI--DENGRVYIFGDRAVDKMLF 272 (323)
Q Consensus 199 ~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~--~~~~i~~i~~g~~~--~~~l--t~~g~ly~wG~n~~gqlg~ 272 (323)
.+|=--.. ....+...|..+..+ ....|.++.+|..- +.++ ..|..+-+|-...- -|-
T Consensus 148 ~vW~l~~l--------------v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-~LL- 211 (476)
T KOG0646|consen 148 LVWLLTDL--------------VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG-VLL- 211 (476)
T ss_pred EEEEEEee--------------cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc-eee-
Confidence 99952211 001222233333333 34468888887663 2222 23444444443220 000
Q ss_pred CCCCCcCCCeeecCCCCeeEEEecCCeeEEEEcCCCEEEe
Q 020659 273 QEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTW 312 (323)
Q Consensus 273 ~~~~~~~~p~~v~~~~~i~~v~~G~~~~~~l~~~g~v~~~ 312 (323)
.....|.. -....|.-+..++++=+++|.||..
T Consensus 212 ---lti~fp~s----i~av~lDpae~~~yiGt~~G~I~~~ 244 (476)
T KOG0646|consen 212 ---LTITFPSS----IKAVALDPAERVVYIGTEEGKIFQN 244 (476)
T ss_pred ---EEEecCCc----ceeEEEcccccEEEecCCcceEEee
Confidence 11222221 1334445566777777788888754
No 27
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.90 E-value=6.4 Score=33.18 Aligned_cols=30 Identities=30% Similarity=0.374 Sum_probs=25.9
Q ss_pred CCCceEEEEcCCCeEEEEEcCCcEEEEeCC
Q 020659 121 LKKEVVQISTGYHHSSAITVDGELYMWGKN 150 (323)
Q Consensus 121 ~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n 150 (323)
++.+++.+.+..++.++||++|.+|.|--.
T Consensus 11 Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~ 40 (219)
T PF07569_consen 11 LGSPVSFLECNGSYLLAITSSGLLYVWNLK 40 (219)
T ss_pred cCCceEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 345888899999999999999999999643
No 28
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=85.74 E-value=22 Score=30.50 Aligned_cols=102 Identities=17% Similarity=0.160 Sum_probs=54.3
Q ss_pred EeCccceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcCCC--eEEEEEcCCcEEEEeCCCCCC
Q 020659 77 ACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYH--HSSAITVDGELYMWGKNSNGQ 154 (323)
Q Consensus 77 ~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g~~--~~~~lt~~g~v~~~G~n~~gq 154 (323)
.|-..-.+-=.+||.+-.|--.. +..++......+|..|..-.+ +.+.-+++|.++.|--.++-.
T Consensus 92 ~~dgrWMyTgseDgt~kIWdlR~-------------~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c 158 (311)
T KOG0315|consen 92 QCDGRWMYTGSEDGTVKIWDLRS-------------LSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSC 158 (311)
T ss_pred eecCeEEEecCCCceEEEEeccC-------------cccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcc
Confidence 33344444445666666664321 122222223345555555444 444557889999996432110
Q ss_pred CCCCCCCCcccccceEecccCCceEEEEecCCC--eEEEEECCCCEEEEeCC
Q 020659 155 LGLGKKAAKVIPIPTKVECLSGIFTKQAALGFE--QSVAVTGGGKVLSWGAG 204 (323)
Q Consensus 155 lg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~--~~~~l~~~g~v~~~G~n 204 (323)
. -...|. .+..|.+++...+ -.+++++.|+.|+|-.-
T Consensus 159 ------~--~~liPe-----~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~ 197 (311)
T KOG0315|consen 159 ------T--HELIPE-----DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLL 197 (311)
T ss_pred ------c--cccCCC-----CCcceeeEEEcCCCcEEEEecCCccEEEEEcc
Confidence 0 112222 2245666666655 45677899999999643
No 29
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=85.26 E-value=23 Score=30.35 Aligned_cols=68 Identities=15% Similarity=0.232 Sum_probs=40.2
Q ss_pred EEEEec--CCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCCCe--eEEEe
Q 020659 179 TKQAAL--GFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLH--SACID 254 (323)
Q Consensus 179 i~~i~~--g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~--~~~lt 254 (323)
|..|.. ...+.+.-+.+|.|++|--... . -...+.|. . ...|.+++...+- .++.+
T Consensus 127 Vn~vvlhpnQteLis~dqsg~irvWDl~~~------~---------c~~~liPe----~-~~~i~sl~v~~dgsml~a~n 186 (311)
T KOG0315|consen 127 VNTVVLHPNQTELISGDQSGNIRVWDLGEN------S---------CTHELIPE----D-DTSIQSLTVMPDGSMLAAAN 186 (311)
T ss_pred cceEEecCCcceEEeecCCCcEEEEEccCC------c---------cccccCCC----C-CcceeeEEEcCCCcEEEEec
Confidence 444433 4446666688899999963321 0 01112222 1 1356667666554 46778
Q ss_pred cCCcEEEEeCCC
Q 020659 255 ENGRVYIFGDRA 266 (323)
Q Consensus 255 ~~g~ly~wG~n~ 266 (323)
+.|++|+|-.-.
T Consensus 187 nkG~cyvW~l~~ 198 (311)
T KOG0315|consen 187 NKGNCYVWRLLN 198 (311)
T ss_pred CCccEEEEEccC
Confidence 999999998654
No 30
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=84.49 E-value=35 Score=31.80 Aligned_cols=70 Identities=14% Similarity=0.145 Sum_probs=39.2
Q ss_pred CceEEEEeC-ccceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEec---CCCCceEEEEcCCCeEEEEEcCCcEEE
Q 020659 71 HSLKALACG-GAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRIS---GLKKEVVQISTGYHHSSAITVDGELYM 146 (323)
Q Consensus 71 ~~i~~v~~g-~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~---~~~~~i~~i~~g~~~~~~lt~~g~v~~ 146 (323)
.+|+.+.=. ...-++|+++|.++..-. +|.. . ..-+..+. ..+.++-.+..+.+-.++||.++++|.
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~--~G~~------~-fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~ 151 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDL--FGEF------Q-FSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYV 151 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeC--CCce------e-echhhhccccCcccccccccccCCCCEEEECCCCeEEE
Confidence 455555443 456788899998877632 2222 0 00111111 111134444666677889999999998
Q ss_pred EeC
Q 020659 147 WGK 149 (323)
Q Consensus 147 ~G~ 149 (323)
.-.
T Consensus 152 v~n 154 (410)
T PF04841_consen 152 VNN 154 (410)
T ss_pred EeC
Confidence 843
No 31
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=83.89 E-value=23 Score=32.29 Aligned_cols=55 Identities=20% Similarity=0.131 Sum_probs=30.6
Q ss_pred CeeEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecCCC-CeeEEEecCCeeEEEEcCCCEEEe
Q 020659 248 LHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLP-YSEEVVCGGYHTCVLTSGGELYTW 312 (323)
Q Consensus 248 ~~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~~~-~i~~v~~G~~~~~~l~~~g~v~~~ 312 (323)
.+.++.+.+|.||++-... |++- .-..+.... ....+.. +.+.++.+.||+||++
T Consensus 321 ~~l~~~~~~G~l~~~d~~t-G~~~--------~~~~~~~~~~~~sp~~~-~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 321 GYLVVGDFEGYLHWLSRED-GSFV--------ARLKTDGSGIASPPVVV-GDGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEeCCCEEEEEECCC-CCEE--------EEEEcCCCccccCCEEE-CCEEEEEeCCceEEEe
Confidence 4667778899999986433 2211 000011100 1122333 3568888999999986
No 32
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=83.61 E-value=29 Score=37.75 Aligned_cols=67 Identities=22% Similarity=0.280 Sum_probs=43.4
Q ss_pred cccCCCcEEEEec-CCCeeEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecC--CC-CeeEEEecCC-eeEEEEcCC
Q 020659 233 KELEGVKVKIAAA-GFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK--LP-YSEEVVCGGY-HTCVLTSGG 307 (323)
Q Consensus 233 ~~~~~~~i~~i~~-g~~~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~--~~-~i~~v~~G~~-~~~~l~~~g 307 (323)
..+++..|..++. +.++.++|+..|+|-+.= . .-.|+.++. ++ +|.+++.=.. ..+|++++|
T Consensus 698 ~Gl~~~~i~a~Avv~~~~fvald~qg~lt~h~--k-----------~g~p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~G 764 (1774)
T PF11725_consen 698 EGLEDRVITAFAVVNDNKFVALDDQGDLTAHQ--K-----------PGRPVPLSRPGLSGEIKDLALDEKQNLYALTSTG 764 (1774)
T ss_pred cCCCcCcceeEEEEcCCceEEeccCCcccccc--C-----------CCCCccCCCCCCCcchhheeeccccceeEecCCC
Confidence 3455555555554 667888888888876522 1 111444433 33 6899998776 456899999
Q ss_pred CEEEe
Q 020659 308 ELYTW 312 (323)
Q Consensus 308 ~v~~~ 312 (323)
++|+.
T Consensus 765 ~Lf~~ 769 (1774)
T PF11725_consen 765 ELFRL 769 (1774)
T ss_pred ceeec
Confidence 99974
No 33
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=82.62 E-value=61 Score=33.18 Aligned_cols=165 Identities=12% Similarity=-0.043 Sum_probs=80.5
Q ss_pred EEcCCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEecC-----CCeEEEEECCCCEEEEe
Q 020659 128 ISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG-----FEQSVAVTGGGKVLSWG 202 (323)
Q Consensus 128 i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g-----~~~~~~l~~~g~v~~~G 202 (323)
.+...++.+++|+.|++|..-...-...+....- .+....+...++.+|+.+.+- ....+++|++|.+--.=
T Consensus 542 ~~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G---~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~ 618 (800)
T TIGR01063 542 VASTHDYLLFFTNRGKVYWLKVYQIPEASRTAKG---KPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTS 618 (800)
T ss_pred EecCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCC---cCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEE
Confidence 3445677888999999999954333222211111 111112233345567776652 23577788888766543
Q ss_pred CCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEec--CCCeeEEEecCCcEEEEeCCCCCcCCcCCCCCcCC
Q 020659 203 AGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAA--GFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARR 280 (323)
Q Consensus 203 ~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~--g~~~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~ 280 (323)
.+.+-...+ .--..+...++..++.+.. ...+.+++|++|++|.+=.+.--..+.......
T Consensus 619 l~~~~~~~r---------------~G~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~-- 681 (800)
T TIGR01063 619 LTEFSNIRS---------------NGIIAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVR-- 681 (800)
T ss_pred hHHhhhhcc---------------CCcccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCee--
Confidence 222211000 0000011112234444433 334689999999999886554333332111110
Q ss_pred CeeecCCCCeeEEEe--cCCeeEEEEcCCCEEEe
Q 020659 281 PSLISKLPYSEEVVC--GGYHTCVLTSGGELYTW 312 (323)
Q Consensus 281 p~~v~~~~~i~~v~~--G~~~~~~l~~~g~v~~~ 312 (323)
...+..-+.|+.+.. ...+.+++|++|.+.-.
T Consensus 682 ~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~ 715 (800)
T TIGR01063 682 GIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRT 715 (800)
T ss_pred cccCCCCCEEEEEEEeccccEEEEEecCCcEEEE
Confidence 112223334555543 23356777888865543
No 34
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=81.29 E-value=74 Score=33.24 Aligned_cols=127 Identities=11% Similarity=-0.042 Sum_probs=68.5
Q ss_pred EEeCccceEEEEcCCcEEEEeCCCCccccCCCCCCceecceE-ecCCCCceEEEEcCC-----CeEEEEEcCCcEEEEeC
Q 020659 76 LACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLR-ISGLKKEVVQISTGY-----HHSSAITVDGELYMWGK 149 (323)
Q Consensus 76 v~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~-~~~~~~~i~~i~~g~-----~~~~~lt~~g~v~~~G~ 149 (323)
.+...++.+++|+.|++|.--...-.+............... +...+++|+.+.+-. .+.+++|++|.+--.--
T Consensus 559 ~~~T~d~LL~FTn~Gkvy~ikvy~IPe~~~~~~G~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~G~VKrt~L 638 (957)
T PRK13979 559 QSNTKDTLLIFTDKGNMYQIKGINIPEFKWKEKGERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDSGGIKKTSL 638 (957)
T ss_pred EEcCCCEEEEEECCCeEEEEEeeeCCCCCcCCCCeEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEEECCCeEEEEeh
Confidence 344566688999999999765433222111100000000000 111144777766643 24688899998887754
Q ss_pred CCCCCCCCCCCCCcccccceEecccCCceEEEEecCC-----CeEEEEECCCCEEEEeCCCCCCcCC
Q 020659 150 NSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF-----EQSVAVTGGGKVLSWGAGGSGRLGH 211 (323)
Q Consensus 150 n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~-----~~~~~l~~~g~v~~~G~n~~gqlG~ 211 (323)
..+-- .. . .-..+...++..++.+.... .+.+++|++|...-|-.+.--.+|+
T Consensus 639 ~ef~~------~r--~-~~~aikL~e~DeLV~v~~~~~~~~~~~Iil~Tk~G~airF~~~eVr~mGR 696 (957)
T PRK13979 639 DKFVT------NY--T-KLMALKLKKGEKLIKVKLVDRTREEKFIKIKTKKGLSFTVEEPELEPVDR 696 (957)
T ss_pred hhccc------cc--c-ceEEEEcCCCCEEEEEEEcCCCCCCCEEEEEeCCCcEEEEEHHHCcccCC
Confidence 43211 01 1 12223333455666665433 3578899999988887665555555
No 35
>PHA02713 hypothetical protein; Provisional
Probab=80.09 E-value=28 Score=33.88 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=13.2
Q ss_pred CCCeEEEEEcCCcEEEEeCC
Q 020659 131 GYHHSSAITVDGELYMWGKN 150 (323)
Q Consensus 131 g~~~~~~lt~~g~v~~~G~n 150 (323)
...+..+..-+|+||.+|-.
T Consensus 341 ~R~~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 341 NRCRFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred hhhceeEEEECCEEEEECCc
Confidence 33333445568899999964
No 36
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=76.81 E-value=65 Score=30.05 Aligned_cols=154 Identities=16% Similarity=0.123 Sum_probs=76.5
Q ss_pred ceEEEEeCccceEEE--EcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcCCCeEEEEE--cCCcEEEE
Q 020659 72 SLKALACGGAHTLFL--TETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAIT--VDGELYMW 147 (323)
Q Consensus 72 ~i~~v~~g~~~~~~l--t~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g~~~~~~lt--~~g~v~~~ 147 (323)
++..+++...-.+++ |..|++|.|=-++---|-. +...-..|..+....+..++++ +||.|..|
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v------------~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW 150 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNV------------LSAHYQSITCLKFSDDGSHIITGSKDGAVLVW 150 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEEEeccccHHHH------------HHhhccceeEEEEeCCCcEEEecCCCccEEEE
Confidence 466666664444433 5689999996543211110 0111126666666666666664 58889999
Q ss_pred eCCCCCCCCCCCCCCcccccceEecccCCceEEEEecCCCe----EEEEECCCCEEEEeCCCCCCcCCCCCCCccccccc
Q 020659 148 GKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQ----SVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRS 223 (323)
Q Consensus 148 G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~----~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~ 223 (323)
---.. -+..+...+.|...-.--..+|+++.+|..- .+-.++|..+-+|--. .|.
T Consensus 151 ~l~~l-----v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS-~g~--------------- 209 (476)
T KOG0646|consen 151 LLTDL-----VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLS-LGV--------------- 209 (476)
T ss_pred EEEee-----cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEec-cce---------------
Confidence 53211 0111111334444332223468888777662 1122344444444211 000
Q ss_pred cccccceeecccCCCcEEEEecCCCeeEEEecCCcEEEE
Q 020659 224 TSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIF 262 (323)
Q Consensus 224 ~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~ly~w 262 (323)
....+..+...+-.-+.-...++++=+++|++|..
T Consensus 210 ----LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~ 244 (476)
T KOG0646|consen 210 ----LLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQN 244 (476)
T ss_pred ----eeEEEecCCcceeEEEcccccEEEecCCcceEEee
Confidence 11111122222344455567777888889988864
No 37
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=76.79 E-value=85 Score=31.38 Aligned_cols=105 Identities=15% Similarity=0.190 Sum_probs=59.9
Q ss_pred CcceEEEeeCCCCCCCCCC--CCCCeeceeEec---cCCCCceEEEEeCccceEEEE--cCCcEEEEeCCCCccccCCCC
Q 020659 36 QRRFAALWGNGDYGRLGLG--SLESRWRPVVCS---AFEKHSLKALACGGAHTLFLT--ETGCVYATGLNDFGQLGISEN 108 (323)
Q Consensus 36 ~~~~v~~~G~n~~gqlG~~--~~~~~~~p~~v~---~~~~~~i~~v~~g~~~~~~lt--~~g~v~~~G~n~~gqlg~~~~ 108 (323)
.++..++-|....-|+=.. ..++...|..+. ...-..|+.|.=..+.-++++ +|=.+..|+.+..
T Consensus 106 Png~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~-------- 177 (893)
T KOG0291|consen 106 PNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGN-------- 177 (893)
T ss_pred CCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccc--------
Confidence 5666666666655554222 112233333332 112235777776666655555 3445666665432
Q ss_pred CCceecceEecCCCCceEEEEc--CCCeEEEEEcCCcEEEEeCC
Q 020659 109 IGYSLEPLRISGLKKEVVQIST--GYHHSSAITVDGELYMWGKN 150 (323)
Q Consensus 109 ~~~~~~p~~~~~~~~~i~~i~~--g~~~~~~lt~~g~v~~~G~n 150 (323)
....|..+......|+...- -..+.+-+.++|.++.|..+
T Consensus 178 --k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~ 219 (893)
T KOG0291|consen 178 --KNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCD 219 (893)
T ss_pred --cccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEec
Confidence 22456666666666766444 44567778999999999976
No 38
>PRK05560 DNA gyrase subunit A; Validated
Probab=75.38 E-value=1e+02 Score=31.62 Aligned_cols=164 Identities=12% Similarity=-0.061 Sum_probs=81.0
Q ss_pred EEcCCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEecCC-----CeEEEEECCCCEEEEe
Q 020659 128 ISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF-----EQSVAVTGGGKVLSWG 202 (323)
Q Consensus 128 i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~-----~~~~~l~~~g~v~~~G 202 (323)
.+...+..+++|+.|++|..-...-...+. ...-.+....+...++.+|+.+.+-. ...+++|++|.+.-.-
T Consensus 544 ~~~t~d~LllfTs~Grv~~l~v~~iP~~~~---~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~ 620 (805)
T PRK05560 544 VASTHDTLLFFTNRGRVYRLKVYEIPEASR---TARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTS 620 (805)
T ss_pred EecCCCeEEEEecCCeEEEEEhhhCcCCCc---CCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEE
Confidence 345667788899999999987653322221 11111111123334455677776654 3577889998765443
Q ss_pred CCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecC--CCeeEEEecCCcEEEEeCCCCCcCCcCCCCCcCC
Q 020659 203 AGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAG--FLHSACIDENGRVYIFGDRAVDKMLFQEGNHARR 280 (323)
Q Consensus 203 ~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~ 280 (323)
...+-...+ .-...+...++..++.+... ..+.+++|+.|++|.+-...--..+.......
T Consensus 621 l~~~~~~~r---------------~G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~-- 683 (805)
T PRK05560 621 LSEFSNIRS---------------NGIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTARGVR-- 683 (805)
T ss_pred hHHhhhccc---------------CCceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccCCcc--
Confidence 222210000 00111111123345444433 34689999999999886544322222111000
Q ss_pred CeeecCCCCeeEEEecC---CeeEEEEcCCCEEE
Q 020659 281 PSLISKLPYSEEVVCGG---YHTCVLTSGGELYT 311 (323)
Q Consensus 281 p~~v~~~~~i~~v~~G~---~~~~~l~~~g~v~~ 311 (323)
-..+..-+.|+.+..-. .+.+++|+.|.+.-
T Consensus 684 ~i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr 717 (805)
T PRK05560 684 GIKLREGDEVVSMDVVREDSQEILTVTENGYGKR 717 (805)
T ss_pred cccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEE
Confidence 01122223355544432 25677777775543
No 39
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=74.88 E-value=57 Score=28.59 Aligned_cols=102 Identities=18% Similarity=0.211 Sum_probs=52.1
Q ss_pred CccceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcC---CCeEEEEEcCCcEEEEeCC-CCCC
Q 020659 79 GGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG---YHHSSAITVDGELYMWGKN-SNGQ 154 (323)
Q Consensus 79 g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g---~~~~~~lt~~g~v~~~G~n-~~gq 154 (323)
+.-|-++...||.||.-+.. .+-+|+-+.. ..+++.+..| .-|.+++..+|..|.+-.. .-+.
T Consensus 62 ~ap~dvapapdG~VWft~qg-~gaiGhLdP~------------tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R 128 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQG-TGAIGHLDPA------------TGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGR 128 (353)
T ss_pred CCccccccCCCCceEEecCc-cccceecCCC------------CCceEEEecCCCCCCceEEECCCCCeeEecCcceeEE
Confidence 34566777889999965443 2233332111 1133333222 3466677777777776432 1112
Q ss_pred CCCCCCCCcccccceEecccCCceEEEEecCCCeEEEEECCCCEEEEeCC
Q 020659 155 LGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAG 204 (323)
Q Consensus 155 lg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n 204 (323)
++....+.+..+.| .+..-+.-.+.+++..|.||.-|++
T Consensus 129 ~dpkt~evt~f~lp-----------~~~a~~nlet~vfD~~G~lWFt~q~ 167 (353)
T COG4257 129 LDPKTLEVTRFPLP-----------LEHADANLETAVFDPWGNLWFTGQI 167 (353)
T ss_pred ecCcccceEEeecc-----------cccCCCcccceeeCCCccEEEeecc
Confidence 22211121112222 2333344457888999999999874
No 40
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=74.22 E-value=7.8 Score=21.81 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=21.9
Q ss_pred CcEEEEecCC-CeeEEEecCCcEEEE
Q 020659 238 VKVKIAAAGF-LHSACIDENGRVYIF 262 (323)
Q Consensus 238 ~~i~~i~~g~-~~~~~lt~~g~ly~w 262 (323)
.++++|++|. ....+++.+|.+|..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 3789999999 899999999999963
No 41
>PHA03098 kelch-like protein; Provisional
Probab=72.05 E-value=97 Score=29.84 Aligned_cols=17 Identities=12% Similarity=0.321 Sum_probs=11.6
Q ss_pred CeEEEEEcCCcEEEEeCC
Q 020659 133 HHSSAITVDGELYMWGKN 150 (323)
Q Consensus 133 ~~~~~lt~~g~v~~~G~n 150 (323)
.|+++ .-+++||.+|-.
T Consensus 335 ~~~~~-~~~~~lyv~GG~ 351 (534)
T PHA03098 335 NPGVT-VFNNRIYVIGGI 351 (534)
T ss_pred cceEE-EECCEEEEEeCC
Confidence 44444 347899999964
No 42
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=71.97 E-value=34 Score=33.47 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=16.5
Q ss_pred EecCCCeeEEEecCCcEEEEeC
Q 020659 243 AAAGFLHSACIDENGRVYIFGD 264 (323)
Q Consensus 243 i~~g~~~~~~lt~~g~ly~wG~ 264 (323)
+.....+.-+..-++++|+-|-
T Consensus 509 m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 509 MTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred CccccccccEEEECCEEEEEec
Confidence 4446667777778899999885
No 43
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=71.80 E-value=79 Score=28.73 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=12.6
Q ss_pred CeeEEEecCCcEEEE
Q 020659 248 LHSACIDENGRVYIF 262 (323)
Q Consensus 248 ~~~~~lt~~g~ly~w 262 (323)
.+.++.+.||+||++
T Consensus 362 ~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 362 DGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEeCCceEEEe
Confidence 468888999999986
No 44
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=71.76 E-value=1.4e+02 Score=31.40 Aligned_cols=125 Identities=11% Similarity=-0.027 Sum_probs=67.8
Q ss_pred EEcCCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEec-c-cCCceEEEEecCCC-----eEEEEECCCCEEE
Q 020659 128 ISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVE-C-LSGIFTKQAALGFE-----QSVAVTGGGKVLS 200 (323)
Q Consensus 128 i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~-~-~~~~~i~~i~~g~~-----~~~~l~~~g~v~~ 200 (323)
.+...+..+++|+.|++|..-...-.+... ...-.+....++ . .++.+|+.+.+-.. +.+++|++|.+.-
T Consensus 559 ~~~T~d~LL~FTn~Gkvy~ikvy~IPe~~~---~~~G~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~G~VKr 635 (957)
T PRK13979 559 QSNTKDTLLIFTDKGNMYQIKGINIPEFKW---KEKGERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDSGGIKK 635 (957)
T ss_pred EEcCCCEEEEEECCCeEEEEEeeeCCCCCc---CCCCeEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEEECCCeEEE
Confidence 344567778899999999886543322221 111111112221 1 13556777766532 4688899998876
Q ss_pred EeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCC-----CeeEEEecCCcEEEEeCCCCCcCC
Q 020659 201 WGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF-----LHSACIDENGRVYIFGDRAVDKML 271 (323)
Q Consensus 201 ~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~-----~~~~~lt~~g~ly~wG~n~~gqlg 271 (323)
.=...+- .....-.-+...++..++.+.... .+.+++|++|.+..+-.+.--.+|
T Consensus 636 t~L~ef~----------------~~r~~~~aikL~e~DeLV~v~~~~~~~~~~~Iil~Tk~G~airF~~~eVr~mG 695 (957)
T PRK13979 636 TSLDKFV----------------TNYTKLMALKLKKGEKLIKVKLVDRTREEKFIKIKTKKGLSFTVEEPELEPVD 695 (957)
T ss_pred Eehhhcc----------------ccccceEEEEcCCCCEEEEEEEcCCCCCCCEEEEEeCCCcEEEEEHHHCcccC
Confidence 5432220 011111222223344566555433 357899999988888765544444
No 45
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=71.06 E-value=18 Score=30.87 Aligned_cols=113 Identities=8% Similarity=-0.069 Sum_probs=0.0
Q ss_pred EEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCCCeeEEEecCCcEEEEeCCCCCc-CCcCCCCC
Q 020659 199 LSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDK-MLFQEGNH 277 (323)
Q Consensus 199 ~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~ly~wG~n~~gq-lg~~~~~~ 277 (323)
|.+-.|.+|++..-.-.+............|.....-.+.+|-.++....|-+.-.. |.||.|-+|+.-. ++....-.
T Consensus 24 ~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe 102 (325)
T KOG0649|consen 24 YLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEEEESLATKRLWE 102 (325)
T ss_pred EEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehhhhhhccchhhhh
Q ss_pred cCCCeeecCCC----CeeEEEecCCeeEEEEcCCCEEEe
Q 020659 278 ARRPSLISKLP----YSEEVVCGGYHTCVLTSGGELYTW 312 (323)
Q Consensus 278 ~~~p~~v~~~~----~i~~v~~G~~~~~~l~~~g~v~~~ 312 (323)
...|+++...+ +.-.+.-..+..+.---|+.+|+|
T Consensus 103 ~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~ 141 (325)
T KOG0649|consen 103 VKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQV 141 (325)
T ss_pred hcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEE
No 46
>PHA02713 hypothetical protein; Provisional
Probab=69.72 E-value=1.1e+02 Score=29.73 Aligned_cols=20 Identities=15% Similarity=0.160 Sum_probs=14.0
Q ss_pred CccceEEEEcCCcEEEEeCC
Q 020659 79 GGAHTLFLTETGCVYATGLN 98 (323)
Q Consensus 79 g~~~~~~lt~~g~v~~~G~n 98 (323)
.+.+..+..-+|+||++|-.
T Consensus 341 ~R~~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 341 NRCRFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred hhhceeEEEECCEEEEECCc
Confidence 44444556678999999864
No 47
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.02 E-value=1.8e+02 Score=31.24 Aligned_cols=63 Identities=10% Similarity=0.074 Sum_probs=33.8
Q ss_pred EEEEcCCcEEEEeCCCCccccCCCCCCc-eecceEecCCCCceEEEEcCCCeEEEEEcCCcEEEEeC
Q 020659 84 LFLTETGCVYATGLNDFGQLGISENIGY-SLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGK 149 (323)
Q Consensus 84 ~~lt~~g~v~~~G~n~~gqlg~~~~~~~-~~~p~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~ 149 (323)
+-+|-|+++|.|-.+..+++-.-...+. ......+..-+.- ...--.|.++|...-+++..|-
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgv---Fv~~IqhlLvvaT~~ei~ilgV 156 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGV---FVPEIQHLLVVATPVEIVILGV 156 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCc---chhhhheeEEecccceEEEEEE
Confidence 5789999999998887555432211111 1111111111110 0012357788888888888874
No 48
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=67.99 E-value=1.1e+02 Score=28.64 Aligned_cols=25 Identities=16% Similarity=0.064 Sum_probs=18.1
Q ss_pred eEEEEeCccceEEEEcCCcEEEEeC
Q 020659 73 LKALACGGAHTLFLTETGCVYATGL 97 (323)
Q Consensus 73 i~~v~~g~~~~~~lt~~g~v~~~G~ 97 (323)
+-.+..+.+-.++||.++++|.-=.
T Consensus 130 i~~~~~~~~GivvLt~~~~~~~v~n 154 (410)
T PF04841_consen 130 IFAIWFYKNGIVVLTGNNRFYVVNN 154 (410)
T ss_pred ccccccCCCCEEEECCCCeEEEEeC
Confidence 3344556677899999999998733
No 49
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=66.75 E-value=17 Score=19.48 Aligned_cols=24 Identities=21% Similarity=0.363 Sum_probs=20.4
Q ss_pred CceEEEEeCccceEEEEcCCcEEE
Q 020659 71 HSLKALACGGAHTLFLTETGCVYA 94 (323)
Q Consensus 71 ~~i~~v~~g~~~~~~lt~~g~v~~ 94 (323)
+.|..|++|.+..++.|+.+-|-.
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRi 25 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRI 25 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEe
Confidence 569999999999999999886644
No 50
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=66.00 E-value=14 Score=33.20 Aligned_cols=139 Identities=13% Similarity=0.114 Sum_probs=68.9
Q ss_pred EEEEecCCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCCCeeEEEecCCc
Q 020659 179 TKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGR 258 (323)
Q Consensus 179 i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~ 258 (323)
.=.|.+|...-++++.+|+-+.-=.-.|.+..++...+.....+......-..|..+...+. .+.-..+.+.|+.||+
T Consensus 30 lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~--~~~~~~~~~~ls~dgk 107 (342)
T PF06433_consen 30 LGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA--QVVPYKNMFALSADGK 107 (342)
T ss_dssp EEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B----BS--GGGEEE-TTSS
T ss_pred EEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh--eecccccceEEccCCc
Confidence 34578888888999998864332223345555666555554444444333333333332122 2334667889988877
Q ss_pred -EEEEeCCCCCcCCcCCCCCcCCCeeecCCCCeeEEEecCCeeEEEEcCCCEEEeeCCCCCc
Q 020659 259 -VYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGC 319 (323)
Q Consensus 259 -ly~wG~n~~gqlg~~~~~~~~~p~~v~~~~~i~~v~~G~~~~~~l~~~g~v~~~G~n~~gq 319 (323)
+|++--....-...-+......-..|+.+.-..-.-.|......+..||++........|+
T Consensus 108 ~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk 169 (342)
T PF06433_consen 108 FLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGK 169 (342)
T ss_dssp EEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSS
T ss_pred EEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCC
Confidence 5665433211111111122222223333333333345666666788888888776666554
No 51
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=64.85 E-value=1.7e+02 Score=29.94 Aligned_cols=70 Identities=16% Similarity=0.074 Sum_probs=44.3
Q ss_pred eCccceEEEEcCCc-EEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcCCCeEEEEEcCCc--EEEEeC
Q 020659 78 CGGAHTLFLTETGC-VYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGE--LYMWGK 149 (323)
Q Consensus 78 ~g~~~~~~lt~~g~-v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g~~~~~~lt~~g~--v~~~G~ 149 (323)
.+....++++.+|+ |+++|.+..-..- ........|..+....+.|..|++-..+.+.-++++. +|.+++
T Consensus 13 t~G~t~i~~d~~gefi~tcgsdg~ir~~--~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 13 TGGLTLICYDPDGEFICTCGSDGDIRKW--KTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred cCceEEEEEcCCCCEEEEecCCCceEEe--ecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCC
Confidence 34456677788887 6677766432221 1222224566666566688899998888888888875 555554
No 52
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=63.76 E-value=1.2e+02 Score=27.71 Aligned_cols=131 Identities=8% Similarity=0.040 Sum_probs=59.6
Q ss_pred EEEEecCCCeEEEEECCCC-EEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCCCeeEEEecCC
Q 020659 179 TKQAALGFEQSVAVTGGGK-VLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENG 257 (323)
Q Consensus 179 i~~i~~g~~~~~~l~~~g~-v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g 257 (323)
+..|..|...-.+++.||+ +|+. ...|-++-++...+.....+......-..++..+ +..-...-..+.++|+.||
T Consensus 40 ~g~i~~G~~P~~~~spDg~~lyva-~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~--~p~~~~~~~~~~~~ls~dg 116 (352)
T TIGR02658 40 LGMTDGGFLPNPVVASDGSFFAHA-STVYSRIARGKRTDYVEVIDPQTHLPIADIELPE--GPRFLVGTYPWMTSLTPDN 116 (352)
T ss_pred EEEEEccCCCceeECCCCCEEEEE-eccccccccCCCCCEEEEEECccCcEEeEEccCC--CchhhccCccceEEECCCC
Confidence 4557777664445888885 5554 3445555566554433322222222222221111 1111112233588999999
Q ss_pred c-EEEEeCCCCCcCCcCCCCCcCCCeeecCCCCeeEEEecCCeeEEEEcCCCEEEe
Q 020659 258 R-VYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTW 312 (323)
Q Consensus 258 ~-ly~wG~n~~gqlg~~~~~~~~~p~~v~~~~~i~~v~~G~~~~~~l~~~g~v~~~ 312 (323)
+ ||+.-......+..-+......-..|+-.....-+..+.....++..||+...-
T Consensus 117 k~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v 172 (352)
T TIGR02658 117 KTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKV 172 (352)
T ss_pred CEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEE
Confidence 7 776654434444433333332223333333222333333444444455555443
No 53
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=62.37 E-value=1.1e+02 Score=26.89 Aligned_cols=138 Identities=17% Similarity=0.236 Sum_probs=70.2
Q ss_pred eeEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeC---ccceEEEEcCCcEEEEeCCC-Cccc
Q 020659 28 KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG---GAHTLFLTETGCVYATGLND-FGQL 103 (323)
Q Consensus 28 ~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g---~~~~~~lt~~g~v~~~G~n~-~gql 103 (323)
..+.+....|+.||.-+.. .|.+|+-+ +. ...++.+..| .-|.+++..||..|.+-... -+++
T Consensus 63 ap~dvapapdG~VWft~qg-~gaiGhLd--P~----------tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~ 129 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQG-TGAIGHLD--PA----------TGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRL 129 (353)
T ss_pred CccccccCCCCceEEecCc-cccceecC--CC----------CCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEe
Confidence 3445556689988865544 33455432 10 1123333333 34566777777777764431 1122
Q ss_pred cCCCCCCceecceEecCCCCceEEEEcCCCeEEEEEcCCcEEEEeCCC-CCCCCCCCCCCcccccceEecccCCceEEEE
Q 020659 104 GISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNS-NGQLGLGKKAAKVIPIPTKVECLSGIFTKQA 182 (323)
Q Consensus 104 g~~~~~~~~~~p~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~-~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i 182 (323)
+.. +. +.+.++ .+ .+-.-++-.+.+++..|+||-.|.+- +|.|.......+..+.|
T Consensus 130 dpk-t~----evt~f~---lp-~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP-------------- 186 (353)
T COG4257 130 DPK-TL----EVTRFP---LP-LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP-------------- 186 (353)
T ss_pred cCc-cc----ceEEee---cc-cccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC--------------
Confidence 211 11 111111 01 22334555677899999999998743 34443333222222222
Q ss_pred ecCCCeEEEEECCCCEEEE
Q 020659 183 ALGFEQSVAVTGGGKVLSW 201 (323)
Q Consensus 183 ~~g~~~~~~l~~~g~v~~~ 201 (323)
-.+.-+-++++.||+||.-
T Consensus 187 qG~gpyGi~atpdGsvwya 205 (353)
T COG4257 187 QGGGPYGICATPDGSVWYA 205 (353)
T ss_pred CCCCCcceEECCCCcEEEE
Confidence 1123356788999999976
No 54
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=60.89 E-value=1.4e+02 Score=27.48 Aligned_cols=18 Identities=11% Similarity=0.213 Sum_probs=14.5
Q ss_pred cCCeeEEEEcCCCEEEee
Q 020659 296 GGYHTCVLTSGGELYTWG 313 (323)
Q Consensus 296 G~~~~~~l~~~g~v~~~G 313 (323)
.+.+.++.+++|+||++-
T Consensus 375 ~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 375 ADDKLLIQARDGTVYAIT 392 (394)
T ss_pred ECCEEEEEeCCceEEEEe
Confidence 355888899999999874
No 55
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=60.62 E-value=1.4e+02 Score=27.38 Aligned_cols=17 Identities=18% Similarity=0.110 Sum_probs=12.4
Q ss_pred eEEEEECCCCEEEEeCC
Q 020659 188 QSVAVTGGGKVLSWGAG 204 (323)
Q Consensus 188 ~~~~l~~~g~v~~~G~n 204 (323)
|+++...+++||++|-.
T Consensus 132 ~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 132 HVAVSLHNGKAYITGGV 148 (376)
T ss_pred eEEEEeeCCEEEEECCC
Confidence 55555467899999853
No 56
>PRK05560 DNA gyrase subunit A; Validated
Probab=58.90 E-value=2.2e+02 Score=29.27 Aligned_cols=214 Identities=14% Similarity=0.006 Sum_probs=102.6
Q ss_pred EeCccceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcCC-----CeEEEEEcCCcEEEEeCCC
Q 020659 77 ACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY-----HHSSAITVDGELYMWGKNS 151 (323)
Q Consensus 77 ~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g~-----~~~~~lt~~g~v~~~G~n~ 151 (323)
+......+++|+.|++|..-...-...+..........-..+. ..++|+.+.+-. ...+++|++|.+-..-.+.
T Consensus 545 ~~t~d~LllfTs~Grv~~l~v~~iP~~~~~~~G~~i~~ll~L~-~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~ 623 (805)
T PRK05560 545 ASTHDTLLFFTNRGRVYRLKVYEIPEASRTARGRPIVNLLPLE-PGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSE 623 (805)
T ss_pred ecCCCeEEEEecCCeEEEEEhhhCcCCCcCCCCeEHHHhcCCC-CCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHH
Confidence 3455668899999999988665332222111111000001111 233677766644 3568889999777654433
Q ss_pred CCCCCCCCCCCcccccceEecccCCceEEEEecC--CCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccc
Q 020659 152 NGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG--FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTP 229 (323)
Q Consensus 152 ~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g--~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p 229 (323)
+-....+ -...+...++..++.+... ..+.+++|++|++|.+-...--..|+... .
T Consensus 624 ~~~~~r~--------G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~--------------G 681 (805)
T PRK05560 624 FSNIRSN--------GIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTAR--------------G 681 (805)
T ss_pred hhhcccC--------CceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccC--------------C
Confidence 2110000 0011111123345544333 34688999999999886544333333221 1
Q ss_pred ee-ecccCCCcEEEEecCC---CeeEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecC-CCCeeEE--EecCCeeEE
Q 020659 230 RL-IKELEGVKVKIAAAGF---LHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK-LPYSEEV--VCGGYHTCV 302 (323)
Q Consensus 230 ~~-i~~~~~~~i~~i~~g~---~~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~-~~~i~~v--~~G~~~~~~ 302 (323)
.. +...++++|+.+.+.. .+.+++|+.|.+.-.-.+.+-....+.... .-..+.. .+.++.+ ..+....++
T Consensus 682 v~~i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~kG~--~~lkl~~~~d~lv~v~~v~~~~~v~i 759 (805)
T PRK05560 682 VRGIKLREGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGKGV--ITIKITEKNGKLVGALPVDDDDEIML 759 (805)
T ss_pred cccccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCCcE--EeeeccCCCCeEEEEEEecCCCeEEE
Confidence 11 1112344666665543 256777888866654322211111000000 0001111 1223322 235556888
Q ss_pred EEcCCCEEEeeCC
Q 020659 303 LTSGGELYTWGSN 315 (323)
Q Consensus 303 l~~~g~v~~~G~n 315 (323)
++++|++..+-.+
T Consensus 760 ~T~~G~~lrf~~~ 772 (805)
T PRK05560 760 ITDSGKLIRTRVS 772 (805)
T ss_pred EecCCeEEEEEHH
Confidence 8999988776544
No 57
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=57.73 E-value=2.3e+02 Score=29.12 Aligned_cols=215 Identities=14% Similarity=-0.004 Sum_probs=101.8
Q ss_pred EeCccceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcC-----CCeEEEEEcCCcEEEEeCCC
Q 020659 77 ACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG-----YHHSSAITVDGELYMWGKNS 151 (323)
Q Consensus 77 ~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g-----~~~~~~lt~~g~v~~~G~n~ 151 (323)
+...++.+++|+.|++|..-...-...+..........-..+. ..++|+.+.+- ....+++|++|.+-..-.+.
T Consensus 543 ~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~i~~ll~L~-~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~ 621 (800)
T TIGR01063 543 ASTHDYLLFFTNRGKVYWLKVYQIPEASRTAKGKPIVNLLPLQ-PDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTE 621 (800)
T ss_pred ecCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCcCHHHhccCC-CCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHH
Confidence 3456668899999999988443222211111111110111111 23367766552 23577889999877665443
Q ss_pred CCCCCCCCCCCcccccceEecccCCceEEEEec--CCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccc
Q 020659 152 NGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL--GFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTP 229 (323)
Q Consensus 152 ~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~--g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p 229 (323)
+..... .-...+..-++..++.+.. ...+.+++|++|++|.+-...--..++.....
T Consensus 622 ~~~~~r--------~G~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv------------- 680 (800)
T TIGR01063 622 FSNIRS--------NGIIAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGV------------- 680 (800)
T ss_pred hhhhcc--------CCcccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCe-------------
Confidence 321000 0000011112234544433 33468899999999998665544444332110
Q ss_pred eeecccCCCcEEEEecC--CCeeEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecC-CCCeeEE--EecCCeeEEEE
Q 020659 230 RLIKELEGVKVKIAAAG--FLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK-LPYSEEV--VCGGYHTCVLT 304 (323)
Q Consensus 230 ~~i~~~~~~~i~~i~~g--~~~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~-~~~i~~v--~~G~~~~~~l~ 304 (323)
..+...++++|+.+.+- ..+.+++|+.|.+.-.=..++-....+.... .-..+.. .+.++.+ .......++++
T Consensus 681 ~~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~kGv--~~ikl~~~~d~lv~~~~v~~~~~v~liT 758 (800)
T TIGR01063 681 RGIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGGKGV--KSIKITDRNGQVVGAIAVDDDDELMLIT 758 (800)
T ss_pred ecccCCCCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCCcce--EEEEccCCCCeEEEEEEecCCCeEEEEe
Confidence 01222344566666543 2356777888866655332211111000000 0001111 1223322 22445688888
Q ss_pred cCCCEEEeeCC
Q 020659 305 SGGELYTWGSN 315 (323)
Q Consensus 305 ~~g~v~~~G~n 315 (323)
++|.+..+-.+
T Consensus 759 ~~G~~lrf~~~ 769 (800)
T TIGR01063 759 SAGKLIRTSVQ 769 (800)
T ss_pred cCCeEEEeeHh
Confidence 99988776544
No 58
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=55.84 E-value=25 Score=24.30 Aligned_cols=42 Identities=24% Similarity=0.268 Sum_probs=29.6
Q ss_pred CCCeeecCCCCeeEEEec-CCeeEEEEcCCCEEEeeCCCCCcc
Q 020659 279 RRPSLISKLPYSEEVVCG-GYHTCVLTSGGELYTWGSNENGCL 320 (323)
Q Consensus 279 ~~p~~v~~~~~i~~v~~G-~~~~~~l~~~g~v~~~G~n~~gqL 320 (323)
..|..++.-..=..|+|. ....++|+.||.+|+-+--+.|.+
T Consensus 7 t~Pa~i~~~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~a 49 (81)
T PF03785_consen 7 THPASINLGQTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNA 49 (81)
T ss_dssp E--SEEETT-SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEE
T ss_pred cccccccccccEEEEEecCCCcEEEEecCCEEEEEEEecCceE
Confidence 346666666677899999 889999999999999885546643
No 59
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=53.48 E-value=17 Score=21.02 Aligned_cols=17 Identities=24% Similarity=0.396 Sum_probs=14.8
Q ss_pred eEEEEECCCCEEEEeCC
Q 020659 188 QSVAVTGGGKVLSWGAG 204 (323)
Q Consensus 188 ~~~~l~~~g~v~~~G~n 204 (323)
+.++++.+|.+|+.|.-
T Consensus 16 ~~IavD~~GNiYv~G~T 32 (38)
T PF06739_consen 16 NGIAVDSNGNIYVTGYT 32 (38)
T ss_pred EEEEECCCCCEEEEEee
Confidence 57899999999999964
No 60
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.98 E-value=92 Score=33.19 Aligned_cols=59 Identities=19% Similarity=0.300 Sum_probs=34.8
Q ss_pred EEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEecCC-----CeEEEEECCCCEEEEeC
Q 020659 136 SAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF-----EQSVAVTGGGKVLSWGA 203 (323)
Q Consensus 136 ~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~-----~~~~~l~~~g~v~~~G~ 203 (323)
+-+|.|.+||.|-.+..+++-.-+.... +-.+ +..++..+|- .|.++|..--+|+..|-
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~sh---tIl~------V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV 156 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSH---TILK------VGLVKPKPGVFVPEIQHLLVVATPVEIVILGV 156 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhh---hhee------eeeecCCCCcchhhhheeEEecccceEEEEEE
Confidence 4678999999999887665543222211 0111 1122222332 37888888888988884
No 61
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=52.43 E-value=1.6e+02 Score=27.44 Aligned_cols=20 Identities=10% Similarity=0.210 Sum_probs=16.3
Q ss_pred CCCeeEEEecCCcEEEEeCC
Q 020659 246 GFLHSACIDENGRVYIFGDR 265 (323)
Q Consensus 246 g~~~~~~lt~~g~ly~wG~n 265 (323)
.+.|.++++.+|.+|+||-.
T Consensus 232 RSGcq~~vtpqg~i~vyGGY 251 (521)
T KOG1230|consen 232 RSGCQFSVTPQGGIVVYGGY 251 (521)
T ss_pred CCcceEEecCCCcEEEEcch
Confidence 34688999999999999943
No 62
>PHA03098 kelch-like protein; Provisional
Probab=51.64 E-value=2.3e+02 Score=27.25 Aligned_cols=16 Identities=19% Similarity=0.457 Sum_probs=11.3
Q ss_pred CeEEEEEcCCcEEEEeC
Q 020659 133 HHSSAITVDGELYMWGK 149 (323)
Q Consensus 133 ~~~~~lt~~g~v~~~G~ 149 (323)
.|++ ..-++++|.+|-
T Consensus 382 ~~~~-~~~~~~iYv~GG 397 (534)
T PHA03098 382 NPCV-VNVNNLIYVIGG 397 (534)
T ss_pred cceE-EEECCEEEEECC
Confidence 4444 445789999986
No 63
>PHA02790 Kelch-like protein; Provisional
Probab=50.60 E-value=2.3e+02 Score=27.03 Aligned_cols=52 Identities=15% Similarity=0.215 Sum_probs=25.9
Q ss_pred EEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecCCCCeeEEEecCCeeEEEEcCCCEEEeeC
Q 020659 252 CIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGS 314 (323)
Q Consensus 252 ~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~~~~i~~v~~G~~~~~~l~~~g~v~~~G~ 314 (323)
+..-+|+||+.|... .. -......+..++.+.. ...+..+..-+|+||..|-
T Consensus 403 ~~~~~~~IYv~GG~~--e~---ydp~~~~W~~~~~m~~------~r~~~~~~v~~~~IYviGG 454 (480)
T PHA02790 403 ALVFGRRLFLVGRNA--EF---YCESSNTWTLIDDPIY------PRDNPELIIVDNKLLLIGG 454 (480)
T ss_pred EEEECCEEEEECCce--EE---ecCCCCcEeEcCCCCC------CccccEEEEECCEEEEECC
Confidence 345688999999421 00 0012234444443321 1112223344788999974
No 64
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=50.38 E-value=1.6e+02 Score=25.19 Aligned_cols=181 Identities=13% Similarity=0.101 Sum_probs=93.5
Q ss_pred eeeeEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeCccceEEEEcCCcEEEEeCCCCccccC
Q 020659 26 ICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGI 105 (323)
Q Consensus 26 ~~~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlg~ 105 (323)
...++++.-.-|..+.+|-.-+ ...+|.++-......|.+|....+-.++=..||++-++-.. .|+
T Consensus 111 eesSVv~SgsfD~s~r~wDCRS----------~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR-~G~--- 176 (307)
T KOG0316|consen 111 EESSVVASGSFDSSVRLWDCRS----------RSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIR-KGT--- 176 (307)
T ss_pred CcceEEEeccccceeEEEEccc----------CCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEee-cce---
Confidence 3455555556666666776543 23455555443344688888888888888899988765321 111
Q ss_pred CCCCCceecceEecCCCCceEEEEcCCCeEEEE--EcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEE---
Q 020659 106 SENIGYSLEPLRISGLKKEVVQISTGYHHSSAI--TVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTK--- 180 (323)
Q Consensus 106 ~~~~~~~~~p~~~~~~~~~i~~i~~g~~~~~~l--t~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~--- 180 (323)
...+.+..+|..++...+..+.| .-++.|.-.-.. .|.|= .......+...+
T Consensus 177 ----------l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~-tGklL------------~sYkGhkn~eykldc 233 (307)
T KOG0316|consen 177 ----------LSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKE-TGKLL------------KSYKGHKNMEYKLDC 233 (307)
T ss_pred ----------eehhhcCCcceeEEecCCCCEEEEeeccceeeecccc-hhHHH------------HHhcccccceeeeee
Confidence 12223445666666655444444 223433332211 11110 000011111111
Q ss_pred EEecCCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCCCeeEEEecC-CcE
Q 020659 181 QAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDEN-GRV 259 (323)
Q Consensus 181 ~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~-g~l 259 (323)
.+.-...|.+-=++||+||.|-.-+.. .-.+++......+.+++|....-.+++.. +..
T Consensus 234 ~l~qsdthV~sgSEDG~Vy~wdLvd~~--------------------~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~ 293 (307)
T KOG0316|consen 234 CLNQSDTHVFSGSEDGKVYFWDLVDET--------------------QISKLSVVSTVIVTDLSCHPTMDDFITATGHGD 293 (307)
T ss_pred eecccceeEEeccCCceEEEEEeccce--------------------eeeeeccCCceeEEeeecccCccceeEecCCce
Confidence 112234466666899999999743221 22223333344588888888766555544 345
Q ss_pred EEEe
Q 020659 260 YIFG 263 (323)
Q Consensus 260 y~wG 263 (323)
+.|=
T Consensus 294 ~~~~ 297 (307)
T KOG0316|consen 294 LFWY 297 (307)
T ss_pred ecee
Confidence 5553
No 65
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=49.40 E-value=1.9e+02 Score=25.65 Aligned_cols=15 Identities=27% Similarity=0.873 Sum_probs=10.6
Q ss_pred EEEecCCcEEEEeCC
Q 020659 251 ACIDENGRVYIFGDR 265 (323)
Q Consensus 251 ~~lt~~g~ly~wG~n 265 (323)
.+..-+++||++|-.
T Consensus 166 ~~~~~~~~iYv~GG~ 180 (323)
T TIGR03548 166 VCVKLQNELYVFGGG 180 (323)
T ss_pred eEEEECCEEEEEcCC
Confidence 334557899999954
No 66
>PLN02153 epithiospecifier protein
Probab=48.99 E-value=2e+02 Score=25.78 Aligned_cols=15 Identities=27% Similarity=0.417 Sum_probs=10.8
Q ss_pred eEEEEECCCCEEEEe
Q 020659 188 QSVAVTGGGKVLSWG 202 (323)
Q Consensus 188 ~~~~l~~~g~v~~~G 202 (323)
+++.+..++++|.||
T Consensus 307 ~~~~v~~~~~~~~~g 321 (341)
T PLN02153 307 TTATVYGKNGLLMHG 321 (341)
T ss_pred cccccCCcceEEEEc
Confidence 345556667899998
No 67
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=48.53 E-value=3.1e+02 Score=27.87 Aligned_cols=156 Identities=8% Similarity=-0.028 Sum_probs=80.4
Q ss_pred cCCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEec--CCCeEEEEECCCCEEEEeCCCCC
Q 020659 130 TGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL--GFEQSVAVTGGGKVLSWGAGGSG 207 (323)
Q Consensus 130 ~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~--g~~~~~~l~~~g~v~~~G~n~~g 207 (323)
.-....+++|++|-+-.--.+.+. +..+..-++..++.+.. ..++.+++|++|++|.+-...-=
T Consensus 492 ~~e~v~VilTk~G~IKr~~~~~~~--------------~saikLKegD~L~~~~~~~t~d~LllfTs~Gr~yrf~v~eIP 557 (735)
T TIGR01062 492 PKEPVTIILSKMGWVRSAKGHDID--------------LSTLKYKAGDSEKAIIEGKSNQKVVFIDSTGRSYALDPDNLP 557 (735)
T ss_pred cCcceEEEEecCCEEEeccccccc--------------hhccCcCCCCeEEEEEEecCCCEEEEEECCCeEEEEEhHhcC
Confidence 356677888999876654333221 11122222334444433 44468889999999999755431
Q ss_pred CcCCCCCCCccccccccccccce--eecccCCCcEEEEecCCC--eeEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCee
Q 020659 208 RLGHGQESSILGFLRSTSEYTPR--LIKELEGVKVKIAAAGFL--HSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSL 283 (323)
Q Consensus 208 qlG~~~~~~~~~~~~~~~~~~p~--~i~~~~~~~i~~i~~g~~--~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~ 283 (323)
.|++ ...|. .+...++.+|+.+.+... ..+++|+.|..+..-.++.-....+.. .-..
T Consensus 558 -~GR~-------------aGgpV~~~L~L~~gE~Iv~~~~v~~~~~lLlaT~~GyGKrt~lse~~~~~RaGK----gvi~ 619 (735)
T TIGR01062 558 -SARG-------------QGEPLTGKLLLPIGATITNILMYSPNQLLLMASDAGYGFLCNFNDLIARNKAGK----ALIN 619 (735)
T ss_pred -cCcc-------------CCceeEeeecCCCCCEEEEEEEecCCcEEEEEEcCCcEEEEEhHhccccCcCCe----EEEE
Confidence 1221 12222 222345567887777554 467788888666544333211110000 0011
Q ss_pred ecCCCCeeE--EEecC-CeeEEEEcCCCEEEeeCCCC
Q 020659 284 ISKLPYSEE--VVCGG-YHTCVLTSGGELYTWGSNEN 317 (323)
Q Consensus 284 v~~~~~i~~--v~~G~-~~~~~l~~~g~v~~~G~n~~ 317 (323)
++..+.++. ...+. .+.++++++|++..+-.++-
T Consensus 620 Lk~~d~lv~v~~v~~~dd~V~liT~~GrlLrf~v~EI 656 (735)
T TIGR01062 620 LPENASVIAPLPVNGDSDMIAAITEAGRMLVFPIDDL 656 (735)
T ss_pred eCCCCEEEEEEEEcCCCCEEEEEeCCCcEEEEEHHHC
Confidence 112222221 12233 35778999999988765543
No 68
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=47.93 E-value=2.1e+02 Score=25.71 Aligned_cols=78 Identities=17% Similarity=0.228 Sum_probs=46.2
Q ss_pred CCceEEEEcCCC--eEEEEEcCCcEEEEeCCCCCCCCCCCCCCcc--------cccceEecccCCceEEEEecCCCeEEE
Q 020659 122 KKEVVQISTGYH--HSSAITVDGELYMWGKNSNGQLGLGKKAAKV--------IPIPTKVECLSGIFTKQAALGFEQSVA 191 (323)
Q Consensus 122 ~~~i~~i~~g~~--~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~--------~~~p~~~~~~~~~~i~~i~~g~~~~~~ 191 (323)
...+...+-..+ ..+-+.+||+...|--+-...++-.+..-+. -..|.++..-++-++..++.|..--++
T Consensus 278 ~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~ 357 (420)
T KOG2096|consen 278 QSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVF 357 (420)
T ss_pred hhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEE
Confidence 335555544444 3455678999999987776666644332211 234555555455567777777766666
Q ss_pred EECCCCEE
Q 020659 192 VTGGGKVL 199 (323)
Q Consensus 192 l~~~g~v~ 199 (323)
-+++|+.|
T Consensus 358 ~se~g~~~ 365 (420)
T KOG2096|consen 358 ASEDGKDY 365 (420)
T ss_pred EcccCccc
Confidence 66666654
No 69
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=47.93 E-value=3.9e+02 Score=28.79 Aligned_cols=116 Identities=20% Similarity=0.262 Sum_probs=64.4
Q ss_pred cccccceee-eEEecccCcceEEEeeCCCCCCCCCC-C--CCCeeceeEeccCCCCceEEEE-eCccceEE-EEcCCcEE
Q 020659 20 LGSKLGICK-RWISSTLQRRFAALWGNGDYGRLGLG-S--LESRWRPVVCSAFEKHSLKALA-CGGAHTLF-LTETGCVY 93 (323)
Q Consensus 20 ~~~~~~~~~-~~~~~~~~~~~v~~~G~n~~gqlG~~-~--~~~~~~p~~v~~~~~~~i~~v~-~g~~~~~~-lt~~g~v~ 93 (323)
..++..+.| .++++.+.||+|-+|-.-+ ..|.+ . .+..+.| .+.++.++. |++.+.++ -++||.|-
T Consensus 1052 ~k~a~s~~~~s~FvsgS~DGtVKvW~~~k--~~~~~~s~rS~ltys~------~~sr~~~vt~~~~~~~~Av~t~DG~v~ 1123 (1431)
T KOG1240|consen 1052 IKLAVSSEHTSLFVSGSDDGTVKVWNLRK--LEGEGGSARSELTYSP------EGSRVEKVTMCGNGDQFAVSTKDGSVR 1123 (1431)
T ss_pred cceeecCCCCceEEEecCCceEEEeeehh--hhcCcceeeeeEEEec------cCCceEEEEeccCCCeEEEEcCCCeEE
Confidence 355566667 9999999999999998765 23332 1 1122222 344555553 33333333 38899998
Q ss_pred EEeCCCCccccCCCCCCceecceEecCCCC--ceEEEEcCC-----CeEEEEEcCCcEEEEeC
Q 020659 94 ATGLNDFGQLGISENIGYSLEPLRISGLKK--EVVQISTGY-----HHSSAITVDGELYMWGK 149 (323)
Q Consensus 94 ~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~--~i~~i~~g~-----~~~~~lt~~g~v~~~G~ 149 (323)
..+.+.+. .......-.++..+.. .+++..+-. .-.++.|..+.+..|+-
T Consensus 1124 ~~~id~~~------~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~ 1180 (1431)
T KOG1240|consen 1124 VLRIDHYN------VSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDT 1180 (1431)
T ss_pred EEEccccc------cccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecc
Confidence 88776531 1111112222222222 555554422 23466788899999974
No 70
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=47.32 E-value=2.4e+02 Score=26.25 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=21.6
Q ss_pred cEEEEecCCCeeEEE--ecCCcEEEEeCCC
Q 020659 239 KVKIAAAGFLHSACI--DENGRVYIFGDRA 266 (323)
Q Consensus 239 ~i~~i~~g~~~~~~l--t~~g~ly~wG~n~ 266 (323)
-|.+...|.+..++. .+|++||.|-.-.
T Consensus 442 iIrSCFgg~~~~fiaSGSED~kvyIWhr~s 471 (519)
T KOG0293|consen 442 IIRSCFGGGNDKFIASGSEDSKVYIWHRIS 471 (519)
T ss_pred EEEeccCCCCcceEEecCCCceEEEEEccC
Confidence 477777788867776 4899999998644
No 71
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=46.57 E-value=2.2e+02 Score=26.14 Aligned_cols=65 Identities=25% Similarity=0.397 Sum_probs=34.4
Q ss_pred ceEEEEcCCC-eE-EEEEcCCc-EEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEecCCC-eEEEEECCCCEE
Q 020659 124 EVVQISTGYH-HS-SAITVDGE-LYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFE-QSVAVTGGGKVL 199 (323)
Q Consensus 124 ~i~~i~~g~~-~~-~~lt~~g~-v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~-~~~~l~~~g~v~ 199 (323)
.+..|..|.. |. ++.+.||+ +|..+.. +. -..++......+..|..|.. +.++++.||+..
T Consensus 28 ~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rd--g~-------------vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~ 92 (369)
T PF02239_consen 28 VVARIPTGGAPHAGLKFSPDGRYLYVANRD--GT-------------VSVIDLATGKVVATIKVGGNPRGIAVSPDGKYV 92 (369)
T ss_dssp EEEEEE-STTEEEEEE-TT-SSEEEEEETT--SE-------------EEEEETTSSSEEEEEE-SSEEEEEEE--TTTEE
T ss_pred EEEEEcCCCCceeEEEecCCCCEEEEEcCC--Ce-------------EEEEECCcccEEEEEecCCCcceEEEcCCCCEE
Confidence 3555666544 44 44567775 7776531 21 22444444556778888777 778889999855
Q ss_pred EEeC
Q 020659 200 SWGA 203 (323)
Q Consensus 200 ~~G~ 203 (323)
.-++
T Consensus 93 ~v~n 96 (369)
T PF02239_consen 93 YVAN 96 (369)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4443
No 72
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=45.41 E-value=2e+02 Score=24.86 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=25.8
Q ss_pred eecceEecCCCCceEE-EEcCCCeEEEE-EcCCcEEEEeC
Q 020659 112 SLEPLRISGLKKEVVQ-ISTGYHHSSAI-TVDGELYMWGK 149 (323)
Q Consensus 112 ~~~p~~~~~~~~~i~~-i~~g~~~~~~l-t~~g~v~~~G~ 149 (323)
..+|..+......|+. +.|-.+++++- ++++.|..|-.
T Consensus 133 ~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~ 172 (334)
T KOG0278|consen 133 KAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDH 172 (334)
T ss_pred CCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEe
Confidence 3466777766666776 45666666554 67899999964
No 73
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=44.77 E-value=4e+02 Score=28.02 Aligned_cols=29 Identities=21% Similarity=0.277 Sum_probs=23.6
Q ss_pred CCCceEEEEcCCCe--EEEEEcCCcEEEEeC
Q 020659 121 LKKEVVQISTGYHH--SSAITVDGELYMWGK 149 (323)
Q Consensus 121 ~~~~i~~i~~g~~~--~~~lt~~g~v~~~G~ 149 (323)
++..|.+|+...++ .++++.+|++..|-.
T Consensus 425 ~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 425 LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred CCCCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence 45589999998888 799999998777754
No 74
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=44.61 E-value=2.5e+02 Score=25.63 Aligned_cols=113 Identities=17% Similarity=0.168 Sum_probs=60.0
Q ss_pred hhcccccceeeeEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeCccceEEEEc--CCcEEEE
Q 020659 18 IKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTE--TGCVYAT 95 (323)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g~~~~~~lt~--~g~v~~~ 95 (323)
...-+++.+..+.++|-..|...|+|-.+..= .+..+.--. ..|+.+.-...-+++.|- +|+|..|
T Consensus 66 svFavsl~P~~~l~aTGGgDD~AflW~~~~ge-----------~~~eltgHK-DSVt~~~FshdgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVATGGGDDLAFLWDISTGE-----------FAGELTGHK-DSVTCCSFSHDGTLLATGDMSGKVLVF 133 (399)
T ss_pred ceEEEEeCCCCceEEecCCCceEEEEEccCCc-----------ceeEecCCC-CceEEEEEccCceEEEecCCCccEEEE
Confidence 33445566666777777777788888766422 122222111 246666655555666665 4778877
Q ss_pred eCCCCccccCCCCCCceecceEecCCCCceEEEEc--CCCeEEEEEcCCcEEEEeCCCCCC
Q 020659 96 GLNDFGQLGISENIGYSLEPLRISGLKKEVVQIST--GYHHSSAITVDGELYMWGKNSNGQ 154 (323)
Q Consensus 96 G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~--g~~~~~~lt~~g~v~~~G~n~~gq 154 (323)
-....+ .-..+...-..|.-+.- -....+|=+++|.||+|--++.++
T Consensus 134 ~~stg~------------~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~ 182 (399)
T KOG0296|consen 134 KVSTGG------------EQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQAL 182 (399)
T ss_pred EcccCc------------eEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcce
Confidence 443211 11111111124444433 223344457899999998765433
No 75
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=43.70 E-value=4.1e+02 Score=27.91 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=22.3
Q ss_pred CceEEEEeCccc--eEEEEcCCcEEEEeC
Q 020659 71 HSLKALACGGAH--TLFLTETGCVYATGL 97 (323)
Q Consensus 71 ~~i~~v~~g~~~--~~~lt~~g~v~~~G~ 97 (323)
..|.+|+...++ .++++.+|++..|-.
T Consensus 427 ~~v~~vaf~~~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 427 SPVNDVAFSPSNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred CCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence 468899998888 899999998777654
No 76
>PHA02790 Kelch-like protein; Provisional
Probab=42.34 E-value=1.7e+02 Score=27.85 Aligned_cols=15 Identities=13% Similarity=0.508 Sum_probs=11.2
Q ss_pred EEEEcCCcEEEEeCC
Q 020659 136 SAITVDGELYMWGKN 150 (323)
Q Consensus 136 ~~lt~~g~v~~~G~n 150 (323)
.+..-+|+||..|..
T Consensus 357 ~~~~~~g~IYviGG~ 371 (480)
T PHA02790 357 AVASINNVIYVIGGH 371 (480)
T ss_pred EEEEECCEEEEecCc
Confidence 344568999999864
No 77
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=42.04 E-value=2.8e+02 Score=25.44 Aligned_cols=114 Identities=11% Similarity=0.138 Sum_probs=52.2
Q ss_pred eEEEEecCCC-eE-EEEECCCC-EEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCCC-eeEEE
Q 020659 178 FTKQAALGFE-QS-VAVTGGGK-VLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFL-HSACI 253 (323)
Q Consensus 178 ~i~~i~~g~~-~~-~~l~~~g~-v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~-~~~~l 253 (323)
.+..|..|.. |. ++.+.||+ +|+.+. .|. -..+.......+..|..|.. ..+++
T Consensus 28 ~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r--dg~--------------------vsviD~~~~~~v~~i~~G~~~~~i~~ 85 (369)
T PF02239_consen 28 VVARIPTGGAPHAGLKFSPDGRYLYVANR--DGT--------------------VSVIDLATGKVVATIKVGGNPRGIAV 85 (369)
T ss_dssp EEEEEE-STTEEEEEE-TT-SSEEEEEET--TSE--------------------EEEEETTSSSEEEEEE-SSEEEEEEE
T ss_pred EEEEEcCCCCceeEEEecCCCCEEEEEcC--CCe--------------------EEEEECCcccEEEEEecCCCcceEEE
Confidence 3566666554 55 44577776 777652 122 12333333345667777766 55888
Q ss_pred ecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecC--------CCCeeEEEecCC---eeEEEEcCCCEEEee
Q 020659 254 DENGRVYIFGDRAVDKMLFQEGNHARRPSLISK--------LPYSEEVVCGGY---HTCVLTSGGELYTWG 313 (323)
Q Consensus 254 t~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~--------~~~i~~v~~G~~---~~~~l~~~g~v~~~G 313 (323)
+.||+...-+....+++..-+......-..|+. ..++..|.+... ..+.+.+.++||.--
T Consensus 86 s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd 156 (369)
T PF02239_consen 86 SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD 156 (369)
T ss_dssp --TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred cCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence 899987665654444444322211111111211 123455554333 334566677777654
No 78
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=41.75 E-value=1.4e+02 Score=27.46 Aligned_cols=62 Identities=16% Similarity=0.186 Sum_probs=40.1
Q ss_pred eEEEEecCCCe---EEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCCCeeEEEe
Q 020659 178 FTKQAALGFEQ---SVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACID 254 (323)
Q Consensus 178 ~i~~i~~g~~~---~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt 254 (323)
.++.+.++.++ .+++..+|++.-|-.+.. +.++ .....+.+|.--....+|++
T Consensus 161 ~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~W-----------------------t~l~-~~~~~~~DIi~~kGkfYAvD 216 (373)
T PLN03215 161 ALVKVKEGDNHRDGVLGIGRDGKINYWDGNVL-----------------------KALK-QMGYHFSDIIVHKGQTYALD 216 (373)
T ss_pred EEEEeecCCCcceEEEEEeecCcEeeecCCee-----------------------eEcc-CCCceeeEEEEECCEEEEEc
Confidence 45667777776 777788999988853322 2222 13345677777666777777
Q ss_pred cCCcEEEEe
Q 020659 255 ENGRVYIFG 263 (323)
Q Consensus 255 ~~g~ly~wG 263 (323)
..|+||++.
T Consensus 217 ~~G~l~~i~ 225 (373)
T PLN03215 217 SIGIVYWIN 225 (373)
T ss_pred CCCeEEEEe
Confidence 777777765
No 79
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=39.36 E-value=32 Score=20.71 Aligned_cols=17 Identities=18% Similarity=0.507 Sum_probs=11.5
Q ss_pred CCeEEEEECCCCEEEEe
Q 020659 186 FEQSVAVTGGGKVLSWG 202 (323)
Q Consensus 186 ~~~~~~l~~~g~v~~~G 202 (323)
..|+++...++++|.+|
T Consensus 3 ~~h~~~~~~~~~i~v~G 19 (49)
T PF13418_consen 3 YGHSAVSIGDNSIYVFG 19 (49)
T ss_dssp BS-EEEEE-TTEEEEE-
T ss_pred ceEEEEEEeCCeEEEEC
Confidence 35788888778999998
No 80
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=38.82 E-value=4.6e+02 Score=27.06 Aligned_cols=60 Identities=18% Similarity=0.175 Sum_probs=35.6
Q ss_pred CcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeCccceEEEEcCCcE--EEEeC
Q 020659 36 QRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCV--YATGL 97 (323)
Q Consensus 36 ~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g~~~~~~lt~~g~v--~~~G~ 97 (323)
....|+++|.+..=. -.....+...|..+.. .+..|..|++-..+.+.=++++.| |.+++
T Consensus 24 ~gefi~tcgsdg~ir-~~~~~sd~e~P~ti~~-~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 24 DGEFICTCGSDGDIR-KWKTNSDEEEPETIDI-SGELVSSIACYSNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred CCCEEEEecCCCceE-EeecCCcccCCchhhc-cCceeEEEeecccceEEeeccceEEEeeCCC
Confidence 333667777664311 1111123345555554 456799999999888888888875 44443
No 81
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=38.42 E-value=3.1e+02 Score=25.00 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=12.9
Q ss_pred CeEEEEEcCCcEEEEeCC
Q 020659 133 HHSSAITVDGELYMWGKN 150 (323)
Q Consensus 133 ~~~~~lt~~g~v~~~G~n 150 (323)
.|+++...+++||.+|-.
T Consensus 131 ~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ceEEEEeeCCEEEEECCC
Confidence 355555468999999864
No 82
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=38.24 E-value=89 Score=27.99 Aligned_cols=58 Identities=17% Similarity=0.250 Sum_probs=38.6
Q ss_pred EEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCCCee--EEEecCCcEEEEeC
Q 020659 190 VAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHS--ACIDENGRVYIFGD 264 (323)
Q Consensus 190 ~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~--~~lt~~g~ly~wG~ 264 (323)
++..+.|+||+|-..+ ..+...++......+..|.+.+....-+ +++.+++.||.|-.
T Consensus 323 a~gnq~g~v~vwdL~~-----------------~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDN-----------------NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred hhccCCCcEEEEECCC-----------------CCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 3457789999996432 1222455555566666788877766655 55578999999864
No 83
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=37.23 E-value=1.2e+02 Score=26.12 Aligned_cols=77 Identities=14% Similarity=0.147 Sum_probs=40.4
Q ss_pred EEEeC-ccceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcCCCeEEEEEcCCcEEEEeCCC
Q 020659 75 ALACG-GAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNS 151 (323)
Q Consensus 75 ~v~~g-~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~ 151 (323)
+++.+ |+-+..+..||+|++.|-....-.-.-+.......+..+..+..--.......+=.+.|..+|+||.++.+.
T Consensus 113 ~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~ 190 (243)
T PF07250_consen 113 DMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG 190 (243)
T ss_pred cccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC
Confidence 35555 556889999999999885431110000010011112222212210112233455567888999999998753
No 84
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=35.93 E-value=3.3e+02 Score=24.49 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=16.8
Q ss_pred ecCCCeeEEEecCCcEEEEeCCC
Q 020659 244 AAGFLHSACIDENGRVYIFGDRA 266 (323)
Q Consensus 244 ~~g~~~~~~lt~~g~ly~wG~n~ 266 (323)
+.-....+++.+|+.+||+-.-.
T Consensus 446 SpkGewiYcigED~vlYCF~~~s 468 (508)
T KOG0275|consen 446 SPKGEWIYCIGEDGVLYCFSVLS 468 (508)
T ss_pred cCCCcEEEEEccCcEEEEEEeec
Confidence 33455778888999999986543
No 85
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=34.96 E-value=2.8e+02 Score=23.53 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=13.5
Q ss_pred ceEEEEcCCCe-EEEEEcCCcEEEE
Q 020659 124 EVVQISTGYHH-SSAITVDGELYMW 147 (323)
Q Consensus 124 ~i~~i~~g~~~-~~~lt~~g~v~~~ 147 (323)
.+..|.++.+- ..+++.+|++|.+
T Consensus 131 ~f~~vfa~~~GvLY~i~~dg~~~~~ 155 (229)
T PF14517_consen 131 DFDAVFAGPNGVLYAITPDGRLYRR 155 (229)
T ss_dssp GEEEEEE-TTS-EEEEETTE-EEEE
T ss_pred cceEEEeCCCccEEEEcCCCceEEe
Confidence 46666665554 5566667766665
No 86
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=33.20 E-value=90 Score=27.97 Aligned_cols=63 Identities=8% Similarity=0.109 Sum_probs=42.4
Q ss_pred eeeEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeCccc--eEEEEcCCcEEEEeC
Q 020659 27 CKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAH--TLFLTETGCVYATGL 97 (323)
Q Consensus 27 ~~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g~~~--~~~lt~~g~v~~~G~ 97 (323)
+..+++.....++||+|-.-. .++...++......+..|.|.+-...- .+++.+++.||-|-+
T Consensus 318 ~~~~la~gnq~g~v~vwdL~~--------~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 318 WQKMLALGNQSGKVYVWDLDN--------NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred HHHHHhhccCCCcEEEEECCC--------CCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 444445555778888887542 133356677777777788888776544 566788999999854
No 87
>PLN00181 protein SPA1-RELATED; Provisional
Probab=32.22 E-value=5.6e+02 Score=26.14 Aligned_cols=145 Identities=11% Similarity=0.030 Sum_probs=68.2
Q ss_pred eeeEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeC---ccceEEEEcCCcEEEEeCCCCccc
Q 020659 27 CKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG---GAHTLFLTETGCVYATGLNDFGQL 103 (323)
Q Consensus 27 ~~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g---~~~~~~lt~~g~v~~~G~n~~gql 103 (323)
...++++-..++.|..|-.+..-.-+. ....|.... ....++..++.. ....+.-..||.|..|-....
T Consensus 494 dg~~latgg~D~~I~iwd~~~~~~~~~----~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~--- 565 (793)
T PLN00181 494 DGEFFATAGVNKKIKIFECESIIKDGR----DIHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS--- 565 (793)
T ss_pred CCCEEEEEeCCCEEEEEECCccccccc----ccccceEEe-cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC---
Confidence 334566666888888887543100010 011111111 112234444432 223344456889999854321
Q ss_pred cCCCCCCceecceEecCCCCceEEEEcCC---CeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEE
Q 020659 104 GISENIGYSLEPLRISGLKKEVVQISTGY---HHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTK 180 (323)
Q Consensus 104 g~~~~~~~~~~p~~~~~~~~~i~~i~~g~---~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~ 180 (323)
.....+......|..++... ...+.-..+|.|..|-.+.... ...+... ..+.
T Consensus 566 ---------~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~-------------~~~~~~~--~~v~ 621 (793)
T PLN00181 566 ---------QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS-------------IGTIKTK--ANIC 621 (793)
T ss_pred ---------eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE-------------EEEEecC--CCeE
Confidence 11222333334677776642 2333445688999996532110 0111111 1233
Q ss_pred EEec---CCCeEEEEECCCCEEEEeC
Q 020659 181 QAAL---GFEQSVAVTGGGKVLSWGA 203 (323)
Q Consensus 181 ~i~~---g~~~~~~l~~~g~v~~~G~ 203 (323)
.+.. ...+.+.-+.+|.|+.|-.
T Consensus 622 ~v~~~~~~g~~latgs~dg~I~iwD~ 647 (793)
T PLN00181 622 CVQFPSESGRSLAFGSADHKVYYYDL 647 (793)
T ss_pred EEEEeCCCCCEEEEEeCCCeEEEEEC
Confidence 3332 2344555578889999964
No 88
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=31.38 E-value=1.7e+02 Score=20.36 Aligned_cols=40 Identities=25% Similarity=0.357 Sum_probs=26.4
Q ss_pred ecceEecCCCCceEEEEcC-CCeEEEEEcCCcEEEEeCCCCC
Q 020659 113 LEPLRISGLKKEVVQISTG-YHHSSAITVDGELYMWGKNSNG 153 (323)
Q Consensus 113 ~~p~~~~~~~~~i~~i~~g-~~~~~~lt~~g~v~~~G~n~~g 153 (323)
..|..+. +...=..|+|. ....++|++||.+|+-+--..|
T Consensus 7 t~Pa~i~-~~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG 47 (81)
T PF03785_consen 7 THPASIN-LGQTSISVSCDVPGSYVALSQDGDLYGKAIVNSG 47 (81)
T ss_dssp E--SEEE-TT-SEEEEEESSTT-EEEEEETTEEEEEEE-BTT
T ss_pred ccccccc-ccccEEEEEecCCCcEEEEecCCEEEEEEEecCc
Confidence 3455555 33366778999 8899999999999998854333
No 89
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=31.33 E-value=2.6e+02 Score=25.70 Aligned_cols=61 Identities=16% Similarity=0.092 Sum_probs=42.2
Q ss_pred eEEEEeCccc---eEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcCCCeEEEEEcCCcEEEEe
Q 020659 73 LKALACGGAH---TLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWG 148 (323)
Q Consensus 73 i~~v~~g~~~---~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G 148 (323)
+..+.++.++ .+++-.+|++..|..+. -+.++.....+.+|..-.....|++..|+||.+.
T Consensus 162 ~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~---------------Wt~l~~~~~~~~DIi~~kGkfYAvD~~G~l~~i~ 225 (373)
T PLN03215 162 LVKVKEGDNHRDGVLGIGRDGKINYWDGNV---------------LKALKQMGYHFSDIIVHKGQTYALDSIGIVYWIN 225 (373)
T ss_pred EEEeecCCCcceEEEEEeecCcEeeecCCe---------------eeEccCCCceeeEEEEECCEEEEEcCCCeEEEEe
Confidence 3345666665 67777888888885322 1222223347889988888899999999999986
No 90
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=30.43 E-value=5.3e+02 Score=25.30 Aligned_cols=56 Identities=18% Similarity=0.293 Sum_probs=29.0
Q ss_pred EEecCCcEEEEeCCCCCcCCcCC----CCCcCCCeeecCCCCeeEEEecCCeeEEEEcCCCEEEeeC
Q 020659 252 CIDENGRVYIFGDRAVDKMLFQE----GNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGS 314 (323)
Q Consensus 252 ~lt~~g~ly~wG~n~~gqlg~~~----~~~~~~p~~v~~~~~i~~v~~G~~~~~~l~~~g~v~~~G~ 314 (323)
+..-++.||+.|-.+. +..... ......++. +..+...-.+.-+..-++++|+-|-
T Consensus 471 ~a~~~~~iYvvGG~~~-~~~~~~VE~ydp~~~~W~~------v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 471 VAVLNGKIYVVGGFDG-TSALSSVERYDPETNQWTM------VAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred EEEECCEEEEECCccC-CCccceEEEEcCCCCceeE------cccCccccccccEEEECCEEEEEec
Confidence 4555789999996552 111000 001111121 2234445556666677888888763
No 91
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=30.15 E-value=3.9e+02 Score=23.62 Aligned_cols=17 Identities=24% Similarity=0.665 Sum_probs=11.9
Q ss_pred eEEEEEcCCcEEEEeCC
Q 020659 134 HSSAITVDGELYMWGKN 150 (323)
Q Consensus 134 ~~~~lt~~g~v~~~G~n 150 (323)
+.+++.-+++||.+|-.
T Consensus 164 ~~~~~~~~~~iYv~GG~ 180 (323)
T TIGR03548 164 QPVCVKLQNELYVFGGG 180 (323)
T ss_pred cceEEEECCEEEEEcCC
Confidence 34445567899999963
No 92
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=28.75 E-value=98 Score=16.26 Aligned_cols=18 Identities=22% Similarity=0.650 Sum_probs=13.6
Q ss_pred eeEEEecCCcEEEEeCCC
Q 020659 249 HSACIDENGRVYIFGDRA 266 (323)
Q Consensus 249 ~~~~lt~~g~ly~wG~n~ 266 (323)
+.+++..+|+||+.-.+.
T Consensus 5 ~gvav~~~g~i~VaD~~n 22 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGN 22 (28)
T ss_dssp EEEEEETTSEEEEEECCC
T ss_pred cEEEEeCCCCEEEEECCC
Confidence 567788899999876554
No 93
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=28.19 E-value=4.4e+02 Score=23.64 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=20.9
Q ss_pred CceEEEEecCCCeEEEEECCCCEEEEe
Q 020659 176 GIFTKQAALGFEQSVAVTGGGKVLSWG 202 (323)
Q Consensus 176 ~~~i~~i~~g~~~~~~l~~~g~v~~~G 202 (323)
..+|+.|..-..+.+++.++ ++|+|-
T Consensus 94 ~~~I~~V~l~r~riVvvl~~-~I~Vyt 119 (346)
T KOG2111|consen 94 NSEIKAVKLRRDRIVVVLEN-KIYVYT 119 (346)
T ss_pred ccceeeEEEcCCeEEEEecC-eEEEEE
Confidence 44699999999999999986 666554
No 94
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=26.77 E-value=3.8e+02 Score=27.22 Aligned_cols=123 Identities=15% Similarity=0.035 Sum_probs=0.0
Q ss_pred EEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeec-ccCCCcEEEEecCCCee-EEEecCCcEEE------
Q 020659 190 VAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIK-ELEGVKVKIAAAGFLHS-ACIDENGRVYI------ 261 (323)
Q Consensus 190 ~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~-~~~~~~i~~i~~g~~~~-~~lt~~g~ly~------ 261 (323)
++...++.+|+|-.+...-+-..-................+.++ ......|..|....... ++|.-.-.|.+
T Consensus 36 Ll~~~d~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r 115 (717)
T PF10168_consen 36 LLACRDGDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRGVVVLELPRR 115 (717)
T ss_pred eEEEeCCEEEEEECCCCEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCcEEEEEeccc
Q ss_pred EeCCCCCcCCcCCCCCcCCCeeecCCCC----------eeEEEecCCeeEEEEcCCCEEEe
Q 020659 262 FGDRAVDKMLFQEGNHARRPSLISKLPY----------SEEVVCGGYHTCVLTSGGELYTW 312 (323)
Q Consensus 262 wG~n~~gqlg~~~~~~~~~p~~v~~~~~----------i~~v~~G~~~~~~l~~~g~v~~~ 312 (323)
||.+.+-+.|.........|.--..+.. +--.+..+.|.++|++|+++-.+
T Consensus 116 ~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y 176 (717)
T PF10168_consen 116 WGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLY 176 (717)
T ss_pred cCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEE
No 95
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=26.69 E-value=2.7e+02 Score=20.67 Aligned_cols=65 Identities=18% Similarity=0.068 Sum_probs=42.2
Q ss_pred eEEEEeCccceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcCCCeEEEEEcCCcEEEE
Q 020659 73 LKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMW 147 (323)
Q Consensus 73 i~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~ 147 (323)
.+++-|-..+.+-+..||.|-.-+... +.........+.. ..|.--++-....++++++|+||+-
T Consensus 2 ~~~Ly~~~~~~L~i~~~g~V~gt~~~~--------~~~s~~~i~~~~~--g~V~i~~~~s~~YLcmn~~G~ly~~ 66 (122)
T PF00167_consen 2 HVQLYCRTGYFLQINPNGTVDGTGDDN--------SPYSVFEIHSVGF--GVVRIRGVKSCRYLCMNKCGRLYGS 66 (122)
T ss_dssp EEEEEETTSEEEEEETTSBEEEESSTT--------STTGEEEEEEEET--TEEEEEETTTTEEEEEBTTSBEEEE
T ss_pred CEEEEECCCeEEEECCCCeEeCCCCcC--------cceeEEEEEeccc--eEEEEEEecceEEEEECCCCeEccc
Confidence 567888878889999999998765431 2222333333332 2333334445777999999999984
No 96
>PF06204 CBM_X: Putative carbohydrate binding domain ; InterPro: IPR009342 This domain is conserved in enzymes that have carbohydrates as substrate, and may be a carbohydrate-binding domain.; PDB: 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A 3QG0_B 3AFJ_A 3ACS_A 1V7V_A 1V7X_A ....
Probab=26.29 E-value=2e+02 Score=19.04 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=20.7
Q ss_pred ceEEEEcCCCeEEEEEcCCcEEEEeCCC
Q 020659 124 EVVQISTGYHHSSAITVDGELYMWGKNS 151 (323)
Q Consensus 124 ~i~~i~~g~~~~~~lt~~g~v~~~G~n~ 151 (323)
+-+.+-+...+.++|++.|.-|.|-.+.
T Consensus 26 P~~n~LsNg~y~~mvt~~G~GySw~~~~ 53 (66)
T PF06204_consen 26 PWVNVLSNGSYGVMVTNSGSGYSWAKNS 53 (66)
T ss_dssp --EEEE-SSSEEEEEETTSBEEEEES-T
T ss_pred CEEEEeeCCcEEEEEcCCCceeeccccc
Confidence 6667777778889999999999998764
No 97
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=25.80 E-value=7.2e+02 Score=25.34 Aligned_cols=163 Identities=15% Similarity=0.091 Sum_probs=83.8
Q ss_pred eCccceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEE--EEcCCCeEEEEEcCCcEEEEeCCCCCCC
Q 020659 78 CGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQ--ISTGYHHSSAITVDGELYMWGKNSNGQL 155 (323)
Q Consensus 78 ~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~--i~~g~~~~~~lt~~g~v~~~G~n~~gql 155 (323)
.-...++++|++|-|=.--...+. ..-..+.. .+.++. .+.+.+..+++|++|++|.+-.+.-. .
T Consensus 492 ~~e~v~VilTk~G~IKr~~~~~~~-----------~saikLKe-gD~L~~~~~~~t~d~LllfTs~Gr~yrf~v~eIP-~ 558 (735)
T TIGR01062 492 PKEPVTIILSKMGWVRSAKGHDID-----------LSTLKYKA-GDSEKAIIEGKSNQKVVFIDSTGRSYALDPDNLP-S 558 (735)
T ss_pred cCcceEEEEecCCEEEeccccccc-----------hhccCcCC-CCeEEEEEEecCCCEEEEEECCCeEEEEEhHhcC-c
Confidence 345667888888866543222111 01111111 123333 33455678999999999999776542 1
Q ss_pred CCCCCCCcccccceEecccCCceEEEEecCCC--eEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeec
Q 020659 156 GLGKKAAKVIPIPTKVECLSGIFTKQAALGFE--QSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIK 233 (323)
Q Consensus 156 g~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~--~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~ 233 (323)
|.+. ..+....+...++.+|+.+.+... +.+++|+.|..+-.-.+.+-...++... . ..++
T Consensus 559 GR~a----GgpV~~~L~L~~gE~Iv~~~~v~~~~~lLlaT~~GyGKrt~lse~~~~~RaGKg----------v---i~Lk 621 (735)
T TIGR01062 559 ARGQ----GEPLTGKLLLPIGATITNILMYSPNQLLLMASDAGYGFLCNFNDLIARNKAGKA----------L---INLP 621 (735)
T ss_pred CccC----CceeEeeecCCCCCEEEEEEEecCCcEEEEEEcCCcEEEEEhHhccccCcCCeE----------E---EEeC
Confidence 2111 112222333445667888777543 5778888887665543333211111100 0 0011
Q ss_pred ccCCCcEEE--EecCC-CeeEEEecCCcEEEEeCCCCCcCCc
Q 020659 234 ELEGVKVKI--AAAGF-LHSACIDENGRVYIFGDRAVDKMLF 272 (323)
Q Consensus 234 ~~~~~~i~~--i~~g~-~~~~~lt~~g~ly~wG~n~~gqlg~ 272 (323)
.+..+.. ...+. .+.+++|++|++..+-.++--+++.
T Consensus 622 --~~d~lv~v~~v~~~dd~V~liT~~GrlLrf~v~EIp~~gR 661 (735)
T TIGR01062 622 --ENASVIAPLPVNGDSDMIAAITEAGRMLVFPIDDLPELSK 661 (735)
T ss_pred --CCCEEEEEEEEcCCCCEEEEEeCCCcEEEEEHHHCCccCC
Confidence 1112222 12233 2577899999999988766555543
No 98
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=25.75 E-value=4.5e+02 Score=22.88 Aligned_cols=41 Identities=12% Similarity=0.059 Sum_probs=26.0
Q ss_pred CeeceeEeccCCCCceEEEEeCccceEEE-EcCCcEEEEeCC
Q 020659 58 SRWRPVVCSAFEKHSLKALACGGAHTLFL-TETGCVYATGLN 98 (323)
Q Consensus 58 ~~~~p~~v~~~~~~~i~~v~~g~~~~~~l-t~~g~v~~~G~n 98 (323)
+..+|..+..-+..-=+-+-|...++++- ++++.|-.|-..
T Consensus 132 p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~r 173 (334)
T KOG0278|consen 132 PKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHR 173 (334)
T ss_pred CCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEec
Confidence 34566666544433223456777777766 778899999654
No 99
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=25.70 E-value=7.3e+02 Score=25.33 Aligned_cols=163 Identities=10% Similarity=-0.048 Sum_probs=80.9
Q ss_pred EEcCCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEecCCC------eEEEEECCCCEEEE
Q 020659 128 ISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFE------QSVAVTGGGKVLSW 201 (323)
Q Consensus 128 i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~------~~~~l~~~g~v~~~ 201 (323)
.+.+.++.+++|++|++|.+-...-...+..+.- .+....+..-++.+|+.+.+-.. +.+++|++|.+.-.
T Consensus 538 ~~~~~d~IllfT~~Gkv~r~~~~eIp~~gr~a~G---v~Ivk~i~L~~~D~Iv~~~~v~~~~~~~~~ll~vT~~G~~KRt 614 (738)
T TIGR01061 538 IANTTDQILIFTSLGNIINIPVHKLADIRWKDLG---EHLSNKITFDENETIVFVGTMNEFDVDQPILVLASKLGMVKRI 614 (738)
T ss_pred EecCCCEEEEEeCCCcEEEEEHHHCcCCCCCCCC---cChhhcccCCCCCeEEEEEEeccccCCCcEEEEEecCCeEEEe
Confidence 4456677899999999999977654444432221 11122333334556777765432 57888999876554
Q ss_pred eCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEE--EecCCCeeEEEecCCcEEEEeCCCCCcCCcCCCCCcC
Q 020659 202 GAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKI--AAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHAR 279 (323)
Q Consensus 202 G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~--i~~g~~~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~ 279 (323)
-...+... ++.. --..+...++..++. +.......+++|++|.+..+-.++.-.+|....-.
T Consensus 615 ~l~e~~~~-r~~k-------------Gv~~ikLk~~d~lV~a~~v~~~d~IlliT~~G~~iRf~~~dI~~~gR~a~GV-- 678 (738)
T TIGR01061 615 ELTELNIK-RNSK-------------ATLCIKLKDKDHLISAFLQQKDKLICLVSDLGYALVFHTNEIPVVGAKAAGV-- 678 (738)
T ss_pred EHHHhccc-cCCC-------------ceEEEeccCCCcEEEEEEeCCCCEEEEEECCCeEEEEEHHHCCcccccCCCe--
Confidence 32222111 0000 000011001112222 22345678899999998887666544444322211
Q ss_pred CCeeecCCCCeeEEEecCC--eeEEEEcCCCE
Q 020659 280 RPSLISKLPYSEEVVCGGY--HTCVLTSGGEL 309 (323)
Q Consensus 280 ~p~~v~~~~~i~~v~~G~~--~~~~l~~~g~v 309 (323)
.-..+..-+.++.+..-.. ..++++++|..
T Consensus 679 ~~I~L~~~D~Vv~~~~v~~~~~ll~vTe~G~~ 710 (738)
T TIGR01061 679 KGMKLKEDDQVKSGVIFEANESLVLLTQRGSV 710 (738)
T ss_pred EEEEeCCCCEEEEEEEecCCCeEEEEECCCce
Confidence 1122223334555443222 35567777643
No 100
>PF13938 DUF4213: Domain of unknown function (DUF4213); PDB: 3NPG_A 3L5O_B.
Probab=25.45 E-value=95 Score=21.66 Aligned_cols=23 Identities=13% Similarity=0.059 Sum_probs=19.1
Q ss_pred CCCCceEEEEeCccceEEEEcCC
Q 020659 68 FEKHSLKALACGGAHTLFLTETG 90 (323)
Q Consensus 68 ~~~~~i~~v~~g~~~~~~lt~~g 90 (323)
.++.+|+++..|...+++..++|
T Consensus 9 ~~~~~V~~~~iG~~~t~V~~~~G 31 (87)
T PF13938_consen 9 APDIRVEDVCIGLHWTAVELSDG 31 (87)
T ss_dssp CGC-EEEEEEEBSSEEEEEETT-
T ss_pred CCCCEEEEEEEcCCEEEEEeCCC
Confidence 34678999999999999999998
No 101
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.23 E-value=7.4e+02 Score=25.22 Aligned_cols=145 Identities=11% Similarity=-0.008 Sum_probs=67.1
Q ss_pred CeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEecCCCeEEEEECCCCEEEEeCCCCCCcCCC
Q 020659 133 HHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHG 212 (323)
Q Consensus 133 ~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~ 212 (323)
...++++++|.++..|.- |...... .........+|+..-.-.+-.++++.+|++++--.+..
T Consensus 95 eeLI~v~k~g~v~Vy~~~-----ge~ie~~------svg~e~~~~~I~ec~~f~~GVavlt~~g~v~~i~~~~~------ 157 (829)
T KOG2280|consen 95 EELICVQKDGTVHVYGLL-----GEFIESN------SVGFESQMSDIVECRFFHNGVAVLTVSGQVILINGVEE------ 157 (829)
T ss_pred ceEEEEeccceEEEeecc-----hhhhccc------ccccccccCceeEEEEecCceEEEecCCcEEEEcCCCc------
Confidence 345678999999998752 1111000 00001111234444333356788999999998632211
Q ss_pred CCCCccccccccccccce-eecccCCCcEEEEecCCCeeEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecC-CCCe
Q 020659 213 QESSILGFLRSTSEYTPR-LIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK-LPYS 290 (323)
Q Consensus 213 ~~~~~~~~~~~~~~~~p~-~i~~~~~~~i~~i~~g~~~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~-~~~i 290 (323)
......|. +-..++..-..-+.-+...++++.-+-.+.--+. ........+..+.. ...+
T Consensus 158 ----------~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~--------q~~~~~~q~~~~~~~~~~~ 219 (829)
T KOG2280|consen 158 ----------PKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHIC--------QVEESRVQLHALSWPNSSV 219 (829)
T ss_pred ----------chhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhccc--------ceecccccccccCCCCceE
Confidence 01111111 1111222233334444445555544422221111 11112222223333 3567
Q ss_pred eEEEec--CCeeEEEEcCCCEEEe
Q 020659 291 EEVVCG--GYHTCVLTSGGELYTW 312 (323)
Q Consensus 291 ~~v~~G--~~~~~~l~~~g~v~~~ 312 (323)
.+++.. ..|.+..+++|++|.-
T Consensus 220 ~ki~VS~n~~~laLyt~~G~i~~v 243 (829)
T KOG2280|consen 220 VKISVSPNRRFLALYTETGKIWVV 243 (829)
T ss_pred EEEEEcCCcceEEEEecCCcEEEE
Confidence 777766 4566778899999863
No 102
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=25.22 E-value=7.4e+02 Score=25.27 Aligned_cols=129 Identities=11% Similarity=-0.007 Sum_probs=65.1
Q ss_pred EeCccceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcCC------CeEEEEEcCCcEEEEeCC
Q 020659 77 ACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY------HHSSAITVDGELYMWGKN 150 (323)
Q Consensus 77 ~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g~------~~~~~lt~~g~v~~~G~n 150 (323)
+.+..+.+++|+.|++|.+-...-...+..........-..+. .++.|+.+.+-. ...+++|++|.+--.-..
T Consensus 539 ~~~~d~IllfT~~Gkv~r~~~~eIp~~gr~a~Gv~Ivk~i~L~-~~D~Iv~~~~v~~~~~~~~~ll~vT~~G~~KRt~l~ 617 (738)
T TIGR01061 539 ANTTDQILIFTSLGNIINIPVHKLADIRWKDLGEHLSNKITFD-ENETIVFVGTMNEFDVDQPILVLASKLGMVKRIELT 617 (738)
T ss_pred ecCCCEEEEEeCCCcEEEEEHHHCcCCCCCCCCcChhhcccCC-CCCeEEEEEEeccccCCCcEEEEEecCCeEEEeEHH
Confidence 4455668999999999998765443333221111001111111 123666665533 247888999976665433
Q ss_pred CCCCCCCCCCCCcccccceEecccCCceEEE--EecCCCeEEEEECCCCEEEEeCCCCCCcCCCC
Q 020659 151 SNGQLGLGKKAAKVIPIPTKVECLSGIFTKQ--AALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQ 213 (323)
Q Consensus 151 ~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~--i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~ 213 (323)
.+... .+..-. .. .++. ++..++. +....+..++++++|++.-+-.+..-.+|+..
T Consensus 618 e~~~~-r~~kGv--~~--ikLk--~~d~lV~a~~v~~~d~IlliT~~G~~iRf~~~dI~~~gR~a 675 (738)
T TIGR01061 618 ELNIK-RNSKAT--LC--IKLK--DKDHLISAFLQQKDKLICLVSDLGYALVFHTNEIPVVGAKA 675 (738)
T ss_pred Hhccc-cCCCce--EE--Eecc--CCCcEEEEEEeCCCCEEEEEECCCeEEEEEHHHCCcccccC
Confidence 32211 000000 00 0111 1112222 22345678889999998887666555555433
No 103
>PF08887 GAD-like: GAD-like domain; InterPro: IPR014983 This domain is functionally uncharacterised, but it appears to be distantly related to the GAD domain IPR004115 from INTERPRO.
Probab=24.91 E-value=71 Score=23.60 Aligned_cols=22 Identities=14% Similarity=0.342 Sum_probs=18.9
Q ss_pred cCCCeeEEEecCCcEEEEeCCC
Q 020659 245 AGFLHSACIDENGRVYIFGDRA 266 (323)
Q Consensus 245 ~g~~~~~~lt~~g~ly~wG~n~ 266 (323)
.-..|.++.|.-|+||.|+.+.
T Consensus 77 ~~~~~~ia~tAFGdl~~w~e~~ 98 (109)
T PF08887_consen 77 PDNYIPIARTAFGDLYVWGENT 98 (109)
T ss_pred CceEEEEEEcccccEEEEEcCC
Confidence 3457889999999999999876
No 104
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=24.25 E-value=61 Score=23.62 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=20.1
Q ss_pred ecCCCeeEEEecCCcEEEEeCCCCCc
Q 020659 244 AAGFLHSACIDENGRVYIFGDRAVDK 269 (323)
Q Consensus 244 ~~g~~~~~~lt~~g~ly~wG~n~~gq 269 (323)
..-..++-+|..+++|..||...+.|
T Consensus 76 TTkDECTplvF~n~~LvgWG~~ay~~ 101 (102)
T PF11399_consen 76 TTKDECTPLVFKNGKLVGWGDDAYSQ 101 (102)
T ss_pred ccCCceEEEEEECCEEEEEcHHhhhc
Confidence 33456788889999999999876654
No 105
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=23.86 E-value=9.6e+02 Score=26.08 Aligned_cols=118 Identities=17% Similarity=0.172 Sum_probs=60.1
Q ss_pred ceEEEEcCCCe-EEEE--EcCCcEEEEeCCCCCCCCCC-CCCCcccccceEecccCCceEEEE---ecCCCeEEEEECCC
Q 020659 124 EVVQISTGYHH-SSAI--TVDGELYMWGKNSNGQLGLG-KKAAKVIPIPTKVECLSGIFTKQA---ALGFEQSVAVTGGG 196 (323)
Q Consensus 124 ~i~~i~~g~~~-~~~l--t~~g~v~~~G~n~~gqlg~~-~~~~~~~~~p~~~~~~~~~~i~~i---~~g~~~~~~l~~~g 196 (323)
.+.++++...| ++++ .+||.|-.|-.-+. .|.+ ..-.+... ...+.++.++ ..|..+++. ++||
T Consensus 1050 ~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~--~~~~~s~rS~lty------s~~~sr~~~vt~~~~~~~~Av~-t~DG 1120 (1431)
T KOG1240|consen 1050 AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKL--EGEGGSARSELTY------SPEGSRVEKVTMCGNGDQFAVS-TKDG 1120 (1431)
T ss_pred cccceeecCCCCceEEEecCCceEEEeeehhh--hcCcceeeeeEEE------eccCCceEEEEeccCCCeEEEE-cCCC
Confidence 56688888877 6666 56899999964322 1111 11110011 1123334443 333334444 8899
Q ss_pred CEEEEeCCCCCCcCCCCCCCccccccccccccceeec--cc-CCCcEEEEecCCC-----eeEEEecCCcEEEEeCCC
Q 020659 197 KVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIK--EL-EGVKVKIAAAGFL-----HSACIDENGRVYIFGDRA 266 (323)
Q Consensus 197 ~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~--~~-~~~~i~~i~~g~~-----~~~~lt~~g~ly~wG~n~ 266 (323)
.|-..+-+.+.+ ....+..+. .+ ....++++.+-.. -.+..|..+.+..|+-..
T Consensus 1121 ~v~~~~id~~~~----------------~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~ 1182 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNV----------------SKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRM 1182 (1431)
T ss_pred eEEEEEcccccc----------------ccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchh
Confidence 998887654411 111222221 11 1223555544322 235568888899998654
No 106
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=23.44 E-value=4.4e+02 Score=22.02 Aligned_cols=55 Identities=13% Similarity=0.202 Sum_probs=27.3
Q ss_pred CeeEEEecCCcEEEEeC--CCCCcCCcCCCCCcCCCeeecCCCCeeEEEec--CCeeEEEEc
Q 020659 248 LHSACIDENGRVYIFGD--RAVDKMLFQEGNHARRPSLISKLPYSEEVVCG--GYHTCVLTS 305 (323)
Q Consensus 248 ~~~~~lt~~g~ly~wG~--n~~gqlg~~~~~~~~~p~~v~~~~~i~~v~~G--~~~~~~l~~ 305 (323)
-.-++++.+|+||+.-. +.-..+ ........-..++ ...++.++.| +...+.+|+
T Consensus 186 pDG~~vD~~G~l~va~~~~~~I~~~--~p~G~~~~~i~~p-~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 186 PDGLAVDSDGNLWVADWGGGRIVVF--DPDGKLLREIELP-VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEEEBTTS-EEEEEETTTEEEEE--ETTSCEEEEEE-S-SSSEEEEEEESTTSSEEEEEE
T ss_pred CCcceEcCCCCEEEEEcCCCEEEEE--CCCccEEEEEcCC-CCCEEEEEEECCCCCEEEEEe
Confidence 56788999999998633 221111 1111111112222 2467777775 445666654
No 107
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=22.71 E-value=6.7e+02 Score=23.85 Aligned_cols=73 Identities=12% Similarity=0.046 Sum_probs=38.5
Q ss_pred EEEecCCCeeEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecCCCCeeEEEecCCeeEEEE--cCCCEEEeeCCCCC
Q 020659 241 KIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLT--SGGELYTWGSNENG 318 (323)
Q Consensus 241 ~~i~~g~~~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~~~~i~~v~~G~~~~~~l~--~~g~v~~~G~n~~g 318 (323)
..+.--....++-+.++.++++..+.-.++-. .....-..++. .-.+|.+...-..+.+ .+|+||.|++|+.-
T Consensus 391 ~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nk---kK~feGh~vaG--ys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~k 465 (503)
T KOG0282|consen 391 LTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNK---KKRFEGHSVAG--YSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTK 465 (503)
T ss_pred eecCCCCCeehhhccCceEEEEecccccccCH---hhhhcceeccC--ceeeEEEcCCCCeEEeecCCccEEEeechhhh
Confidence 33444445556666777777777555333211 11111111111 2345555555444444 68999999999753
No 108
>PLN02772 guanylate kinase
Probab=22.42 E-value=1.6e+02 Score=27.28 Aligned_cols=66 Identities=14% Similarity=0.086 Sum_probs=34.2
Q ss_pred eEEEEECCCCEEEEeC-CCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCCCeeEEEecCCcEEEEeC
Q 020659 188 QSVAVTGGGKVLSWGA-GGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGD 264 (323)
Q Consensus 188 ~~~~l~~~g~v~~~G~-n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~ly~wG~ 264 (323)
|+++.-. .++|+||- |+.+.+-..- ..-+........|+..-..+ -+...|++++-.+.+|+..+.
T Consensus 28 ~tav~ig-dk~yv~GG~~d~~~~~~~v---~i~D~~t~~W~~P~V~G~~P-------~~r~GhSa~v~~~~rilv~~~ 94 (398)
T PLN02772 28 ETSVTIG-DKTYVIGGNHEGNTLSIGV---QILDKITNNWVSPIVLGTGP-------KPCKGYSAVVLNKDRILVIKK 94 (398)
T ss_pred ceeEEEC-CEEEEEcccCCCccccceE---EEEECCCCcEecccccCCCC-------CCCCcceEEEECCceEEEEeC
Confidence 4444444 48999994 4433222110 00011233444554443333 234568888888888888873
No 109
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.31 E-value=1.8e+02 Score=30.44 Aligned_cols=32 Identities=19% Similarity=0.402 Sum_probs=21.6
Q ss_pred eeEEE-ecCCeeEEEE--cCCCEEEeeCCCCCccC
Q 020659 290 SEEVV-CGGYHTCVLT--SGGELYTWGSNENGCLG 321 (323)
Q Consensus 290 i~~v~-~G~~~~~~l~--~~g~v~~~G~n~~gqLG 321 (323)
|..+. |..+-.++|+ +|++|++|+.|+-..||
T Consensus 256 ilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~ 290 (1049)
T KOG0307|consen 256 ILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG 290 (1049)
T ss_pred eeeeccCCCCchhhhcccCCCCeeEecCCCceEee
Confidence 55555 5555344444 69999999999865554
No 110
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=22.13 E-value=3.5e+02 Score=20.41 Aligned_cols=65 Identities=20% Similarity=0.157 Sum_probs=37.5
Q ss_pred ceEEEEeCccceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCC-ceEEEEcCCCeEEEEEcCCcEEEE
Q 020659 72 SLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMW 147 (323)
Q Consensus 72 ~i~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~-~i~~i~~g~~~~~~lt~~g~v~~~ 147 (323)
+.+++-|-..+.+.+..||.|-.--... ... .-..+..... .|.--.+-....+++++.|+||+-
T Consensus 3 R~~~Ly~~~~~~L~I~~~G~V~Gt~~~~--------~~~---~ile~~s~~~g~V~ik~~~s~~YLCmn~~G~ly~s 68 (126)
T smart00442 3 RLRQLYCRNGQHLQILPDGTVDGTRDES--------SSF---TILEIIAVAVGVVAIKGVASCRYLCMNKCGKLYGS 68 (126)
T ss_pred eEEEEEeCCCeEEEEcCCceEecccCCC--------Ccc---eEEEEEeccCCEEEEEEcccceEEEECCCCCEEEc
Confidence 4677777776777888888876421110 111 1111222222 333345566778899999999983
No 111
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=21.60 E-value=1.7e+02 Score=24.83 Aligned_cols=31 Identities=13% Similarity=0.089 Sum_probs=23.6
Q ss_pred EEEecCCCeeEEEecCCcEEEEeCCCCCcCC
Q 020659 241 KIAAAGFLHSACIDENGRVYIFGDRAVDKML 271 (323)
Q Consensus 241 ~~i~~g~~~~~~lt~~g~ly~wG~n~~gqlg 271 (323)
..|.......++.+.+|.||+|-.|.++++-
T Consensus 64 ~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~ 94 (238)
T KOG2444|consen 64 QRVVTASAKLMVGTSDGAVYVFNWNLEGAHS 94 (238)
T ss_pred eeecccCceEEeecccceEEEecCCccchHH
Confidence 3445556677888999999999999777653
No 112
>PF13854 Kelch_5: Kelch motif
Probab=21.13 E-value=1.1e+02 Score=17.77 Aligned_cols=17 Identities=24% Similarity=0.610 Sum_probs=12.0
Q ss_pred CCeEEEEECCCCEEEEeC
Q 020659 186 FEQSVAVTGGGKVLSWGA 203 (323)
Q Consensus 186 ~~~~~~l~~~g~v~~~G~ 203 (323)
..|++++.. +++|.+|=
T Consensus 6 ~~hs~~~~~-~~iyi~GG 22 (42)
T PF13854_consen 6 YGHSAVVVG-NNIYIFGG 22 (42)
T ss_pred cceEEEEEC-CEEEEEcC
Confidence 346666654 79999983
No 113
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.38 E-value=9.2e+02 Score=24.57 Aligned_cols=58 Identities=16% Similarity=0.186 Sum_probs=37.2
Q ss_pred eEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcCCCeEEEEEcCCcEEEEeC
Q 020659 83 TLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGK 149 (323)
Q Consensus 83 ~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~ 149 (323)
-++++++|.++.+|.-. . ..+.. ..-.+....+|+.+-.-.+..++++.+|+++..-.
T Consensus 97 LI~v~k~g~v~Vy~~~g-----e--~ie~~--svg~e~~~~~I~ec~~f~~GVavlt~~g~v~~i~~ 154 (829)
T KOG2280|consen 97 LICVQKDGTVHVYGLLG-----E--FIESN--SVGFESQMSDIVECRFFHNGVAVLTVSGQVILING 154 (829)
T ss_pred EEEEeccceEEEeecch-----h--hhccc--ccccccccCceeEEEEecCceEEEecCCcEEEEcC
Confidence 57889999999987621 1 11110 12122233367776666688999999999998644
Done!