Query 020659
Match_columns 323
No_of_seqs 172 out of 1811
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 06:18:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020659.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020659hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4d9s_A UVB-resistance protein 100.0 2.8E-63 9.4E-68 457.9 35.9 294 16-323 67-364 (406)
2 4d9s_A UVB-resistance protein 100.0 4E-63 1.4E-67 456.9 35.7 299 11-323 10-312 (406)
3 3kci_A Probable E3 ubiquitin-p 100.0 1.5E-62 5.3E-67 450.6 31.0 294 16-323 52-352 (389)
4 1a12_A RCC1, regulator of chro 100.0 1.4E-60 4.7E-65 441.2 33.7 293 17-323 59-372 (413)
5 3kci_A Probable E3 ubiquitin-p 100.0 1.2E-60 4.2E-65 438.0 27.0 282 30-323 12-300 (389)
6 3of7_A Regulator of chromosome 100.0 1.8E-59 6E-64 440.5 32.8 298 16-323 66-412 (473)
7 1a12_A RCC1, regulator of chro 100.0 1E-58 3.4E-63 428.7 30.9 294 22-323 13-321 (413)
8 3mvd_K Regulator of chromosome 100.0 5.9E-58 2E-62 425.0 34.3 289 19-323 77-381 (423)
9 3of7_A Regulator of chromosome 100.0 1.1E-58 3.9E-63 435.0 29.9 298 16-323 9-348 (473)
10 3mvd_K Regulator of chromosome 100.0 8.2E-58 2.8E-62 424.0 33.0 301 13-323 20-329 (423)
11 3qhy_B Beta-lactamase inhibito 100.0 1.3E-49 4.6E-54 348.5 25.4 228 18-322 25-252 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 1.9E-45 6.5E-50 322.1 25.3 211 39-322 3-213 (282)
13 1p22_A F-BOX/WD-repeat protein 97.5 0.06 2E-06 48.6 27.1 188 71-313 174-362 (435)
14 2ovr_B FBW7, F-BOX/WD repeat p 97.1 0.14 4.8E-06 46.3 28.0 219 28-316 129-348 (445)
15 2ovr_B FBW7, F-BOX/WD repeat p 97.1 0.15 5.3E-06 45.9 28.3 218 29-316 170-391 (445)
16 1p22_A F-BOX/WD-repeat protein 96.7 0.31 1.1E-05 43.8 25.8 190 72-316 135-325 (435)
17 4gbf_A Phikz131; 7-bladed beta 96.7 0.0039 1.3E-07 51.6 6.7 72 71-155 309-380 (400)
18 4gbf_A Phikz131; 7-bladed beta 96.2 0.016 5.4E-07 48.0 7.8 71 124-209 310-380 (400)
19 4aez_A CDC20, WD repeat-contai 95.6 1.1 3.8E-05 39.6 25.3 138 31-204 106-247 (401)
20 2zwa_A Leucine carboxyl methyl 95.3 2.2 7.5E-05 41.3 20.7 64 80-150 441-509 (695)
21 3odt_A Protein DOA1; ubiquitin 95.3 1.1 3.7E-05 37.6 24.7 185 71-316 105-296 (313)
22 1gxr_A ESG1, transducin-like e 95.2 1.3 4.3E-05 37.5 28.2 182 72-313 143-334 (337)
23 3mmy_A MRNA export factor; mRN 94.9 1.6 5.4E-05 37.3 20.8 194 70-316 39-247 (368)
24 3k26_A Polycomb protein EED; W 94.7 1.8 6.2E-05 37.0 20.3 247 29-315 86-365 (366)
25 1gxr_A ESG1, transducin-like e 94.7 1.7 5.9E-05 36.6 27.2 191 32-266 15-214 (337)
26 3v7d_B Cell division control p 94.7 2.3 8E-05 38.1 27.6 228 29-312 218-459 (464)
27 3v7d_B Cell division control p 94.4 2.7 9.3E-05 37.7 28.1 232 29-316 133-381 (464)
28 3k26_A Polycomb protein EED; W 94.0 2.6 8.8E-05 36.0 21.1 109 71-204 70-191 (366)
29 1yfq_A Cell cycle arrest prote 93.0 3.8 0.00013 34.7 24.0 238 28-316 23-282 (342)
30 1sq9_A Antiviral protein SKI8; 92.0 5.6 0.00019 34.5 18.6 109 29-150 27-156 (397)
31 3mkq_A Coatomer beta'-subunit; 91.4 11 0.00037 36.5 25.1 226 23-316 20-259 (814)
32 4aez_A CDC20, WD repeat-contai 91.1 7.4 0.00025 34.1 22.1 146 75-266 98-248 (401)
33 3i2n_A WD repeat-containing pr 90.3 7.6 0.00026 32.8 24.9 194 71-315 66-290 (357)
34 3jrp_A Fusion protein of prote 90.2 8 0.00027 33.0 27.4 230 28-315 23-286 (379)
35 2zwa_A Leucine carboxyl methyl 90.2 14 0.00047 35.6 20.5 62 132-202 441-507 (695)
36 3odt_A Protein DOA1; ubiquitin 90.1 7.1 0.00024 32.3 26.5 220 27-316 28-255 (313)
37 3jro_A Fusion protein of prote 89.9 15 0.0005 35.6 25.9 235 28-316 21-285 (753)
38 2xyi_A Probable histone-bindin 89.8 10 0.00035 33.6 26.4 248 28-314 141-408 (430)
39 3uc1_A DNA gyrase subunit A; D 89.7 9.5 0.00032 33.1 22.7 214 76-314 49-277 (327)
40 3sfz_A APAF-1, apoptotic pepti 89.7 20 0.00068 36.7 21.2 223 28-314 1015-1247(1249)
41 3no0_A DNA gyrase subunit A; D 89.4 8.9 0.0003 32.3 20.8 205 71-311 24-239 (276)
42 1sq9_A Antiviral protein SKI8; 87.9 13 0.00043 32.1 23.1 197 29-266 82-322 (397)
43 1k3i_A Galactose oxidase precu 87.7 19 0.00066 34.2 25.5 71 247-318 457-533 (656)
44 3mkq_A Coatomer beta'-subunit; 87.3 22 0.00074 34.3 23.5 181 29-266 68-259 (814)
45 1r5m_A SIR4-interacting protei 87.0 14 0.00049 31.9 21.6 136 31-204 220-360 (425)
46 1k8k_C P40, ARP2/3 complex 41 86.8 14 0.00047 31.5 24.8 244 27-316 19-274 (372)
47 4a11_B DNA excision repair pro 86.8 14 0.00049 31.7 25.8 199 82-317 158-366 (408)
48 1yfq_A Cell cycle arrest prote 86.6 13 0.00045 31.1 22.0 203 72-317 13-226 (342)
49 4g56_B MGC81050 protein; prote 86.4 15 0.00052 31.6 25.8 191 72-318 141-345 (357)
50 3zwl_B Eukaryotic translation 85.8 15 0.00051 31.0 22.1 67 72-150 34-104 (369)
51 1xip_A Nucleoporin NUP159; bet 85.2 17 0.00057 32.4 13.1 109 113-262 79-187 (388)
52 1r5m_A SIR4-interacting protei 85.2 18 0.00061 31.3 25.3 66 72-150 110-179 (425)
53 1pgu_A Actin interacting prote 84.5 25 0.00084 32.3 24.5 146 72-265 208-365 (615)
54 2aq5_A Coronin-1A; WD40 repeat 84.5 20 0.00067 31.2 21.5 105 28-149 94-205 (402)
55 1suu_A DNA gyrase subunit A; t 83.2 21 0.00072 30.5 21.9 214 76-313 54-280 (312)
56 3uc1_A DNA gyrase subunit A; D 82.7 23 0.00078 30.6 21.2 229 16-271 41-284 (327)
57 3jrp_A Fusion protein of prote 82.6 21 0.00073 30.2 23.8 197 72-316 13-240 (379)
58 3no0_A DNA gyrase subunit A; D 82.4 21 0.00072 30.0 20.1 177 67-271 64-251 (276)
59 2aq5_A Coronin-1A; WD40 repeat 82.2 24 0.00083 30.6 26.7 145 33-203 52-205 (402)
60 3i2n_A WD repeat-containing pr 80.3 25 0.00086 29.5 23.4 190 71-314 19-241 (357)
61 3zwl_B Eukaryotic translation 80.2 25 0.00087 29.5 23.5 67 124-203 177-247 (369)
62 2ynn_A Coatomer subunit beta'; 79.9 25 0.00086 29.2 26.3 148 19-203 16-170 (304)
63 3p6j_A De novo designed beta-t 79.9 17 0.00057 27.2 11.7 107 70-200 29-138 (142)
64 1k8k_C P40, ARP2/3 complex 41 79.3 28 0.00095 29.4 23.8 123 71-203 97-231 (372)
65 1wp5_A Topoisomerase IV; broke 79.3 30 0.001 29.8 23.3 218 75-316 45-277 (323)
66 3vl1_A 26S proteasome regulato 78.2 33 0.0011 29.7 27.8 191 71-316 140-365 (420)
67 1erj_A Transcriptional repress 78.0 34 0.0012 29.7 20.1 124 73-203 209-339 (393)
68 1pgu_A Actin interacting prote 77.8 42 0.0014 30.7 23.3 108 72-204 162-282 (615)
69 3mmy_A MRNA export factor; mRN 77.6 30 0.001 29.0 24.5 181 29-266 55-247 (368)
70 3no2_A Uncharacterized protein 77.2 30 0.001 28.7 23.3 161 124-321 89-266 (276)
71 3vl1_A 26S proteasome regulato 77.0 36 0.0012 29.4 26.7 139 26-204 66-211 (420)
72 1xip_A Nucleoporin NUP159; bet 76.8 40 0.0014 29.9 12.5 98 179-312 90-187 (388)
73 1zi0_A DNA gyrase subunit A; b 76.8 34 0.0012 29.1 24.1 217 75-315 48-276 (307)
74 1suu_A DNA gyrase subunit A; t 76.5 35 0.0012 29.1 17.8 213 80-316 8-231 (312)
75 2pm9_A Protein WEB1, protein t 75.8 38 0.0013 29.1 22.6 199 72-317 115-338 (416)
76 4gqb_B Methylosome protein 50; 75.8 37 0.0013 29.0 26.2 219 31-315 96-330 (344)
77 2pm9_A Protein WEB1, protein t 75.3 39 0.0013 29.1 22.6 200 72-316 69-294 (416)
78 3ow8_A WD repeat-containing pr 72.6 42 0.0014 28.2 24.4 137 30-202 50-192 (321)
79 3l6v_A GYRA, DNA gyrase subuni 72.6 50 0.0017 29.0 23.6 128 76-212 53-187 (370)
80 3jro_A Fusion protein of prote 72.5 71 0.0024 30.8 23.3 197 72-316 11-238 (753)
81 2xn4_A Kelch-like protein 2; s 71.7 35 0.0012 28.3 10.6 16 133-149 148-163 (302)
82 3gre_A Serine/threonine-protei 71.6 51 0.0017 28.7 19.3 100 80-204 182-291 (437)
83 3sfz_A APAF-1, apoptotic pepti 70.9 96 0.0033 31.6 23.0 182 81-316 1016-1207(1249)
84 3ow8_A WD repeat-containing pr 70.8 46 0.0016 27.9 25.8 174 82-313 136-318 (321)
85 1k3i_A Galactose oxidase precu 70.8 14 0.00047 35.2 8.5 60 249-314 246-305 (656)
86 4ery_A WD repeat-containing pr 69.1 47 0.0016 27.4 25.1 138 29-203 78-221 (312)
87 1zgk_A Kelch-like ECH-associat 68.0 52 0.0018 27.4 13.1 17 132-149 113-129 (308)
88 4ery_A WD repeat-containing pr 67.1 52 0.0018 27.1 24.8 181 28-266 35-223 (312)
89 2ymu_A WD-40 repeat protein; u 67.0 75 0.0025 28.8 24.4 180 72-313 346-536 (577)
90 2xyi_A Probable histone-bindin 66.3 68 0.0023 28.1 22.4 208 72-316 130-353 (430)
91 4aow_A Guanine nucleotide-bind 64.8 59 0.002 26.9 25.5 113 178-313 217-334 (340)
92 2woz_A Kelch repeat and BTB do 64.6 62 0.0021 27.0 10.9 16 134-149 49-64 (318)
93 2xn4_A Kelch-like protein 2; s 64.1 61 0.0021 26.8 15.9 17 132-149 100-116 (302)
94 4gga_A P55CDC, cell division c 63.5 75 0.0026 27.7 27.0 109 72-204 149-260 (420)
95 3f3f_A Nucleoporin SEH1; struc 63.5 61 0.0021 26.6 25.0 113 27-150 22-142 (351)
96 3l6v_A GYRA, DNA gyrase subuni 63.2 78 0.0027 27.7 17.3 126 128-271 53-185 (370)
97 4ggc_A P55CDC, cell division c 61.9 64 0.0022 26.3 22.4 48 255-313 262-312 (318)
98 2xzm_R RACK1; ribosome, transl 61.8 72 0.0025 26.8 26.1 227 28-315 39-284 (343)
99 1vyh_C Platelet-activating fac 61.5 82 0.0028 27.4 24.8 138 28-203 120-263 (410)
100 4a11_B DNA excision repair pro 60.3 78 0.0027 26.8 27.9 205 71-316 44-276 (408)
101 4aow_A Guanine nucleotide-bind 58.8 76 0.0026 26.1 26.4 223 29-315 52-285 (340)
102 1vyh_C Platelet-activating fac 55.8 1E+02 0.0035 26.8 24.7 95 187-313 309-408 (410)
103 4asc_A Kelch repeat and BTB do 55.7 88 0.003 26.0 11.2 16 133-149 91-106 (315)
104 2uvk_A YJHT; unknown function, 55.0 70 0.0024 27.2 9.5 17 186-203 110-126 (357)
105 2ymu_A WD-40 repeat protein; u 54.2 1.3E+02 0.0043 27.3 25.2 103 72-202 305-413 (577)
106 3q7m_A Lipoprotein YFGL, BAMB; 53.9 1E+02 0.0035 26.2 12.9 56 248-312 319-374 (376)
107 4e54_B DNA damage-binding prot 53.3 1.2E+02 0.0039 26.6 22.3 67 71-149 120-194 (435)
108 1rwi_B Serine/threonine-protei 52.9 85 0.0029 24.9 15.5 15 188-202 153-167 (270)
109 4gga_A P55CDC, cell division c 52.3 1.2E+02 0.004 26.4 23.4 98 81-202 116-215 (420)
110 1rwi_B Serine/threonine-protei 52.1 88 0.003 24.9 15.5 14 188-201 111-124 (270)
111 4g56_B MGC81050 protein; prote 51.9 1.1E+02 0.0038 26.0 27.2 148 123-315 140-300 (357)
112 3gre_A Serine/threonine-protei 51.4 1.2E+02 0.0041 26.2 18.3 153 28-203 76-243 (437)
113 3ii7_A Kelch-like protein 7; p 50.6 1E+02 0.0036 25.3 14.5 17 132-149 141-157 (306)
114 1q7f_A NHL, brain tumor CG1071 45.6 1.2E+02 0.004 24.5 18.5 15 188-202 167-181 (286)
115 2vpj_A Kelch-like protein 12; 45.6 1.2E+02 0.0042 24.7 16.1 17 132-149 151-167 (301)
116 1q7f_A NHL, brain tumor CG1071 45.1 1.2E+02 0.0041 24.4 16.9 16 188-203 210-225 (286)
117 3ei3_B DNA damage-binding prot 42.9 1.5E+02 0.0052 25.0 24.2 190 72-316 75-282 (383)
118 2woz_A Kelch repeat and BTB do 42.7 1E+02 0.0035 25.6 8.4 17 247-264 101-117 (318)
119 3no2_A Uncharacterized protein 42.6 1.4E+02 0.0048 24.4 19.4 22 249-271 245-266 (276)
120 3ii7_A Kelch-like protein 7; p 41.4 1.5E+02 0.005 24.4 17.2 18 132-150 93-110 (306)
121 2vpj_A Kelch-like protein 12; 40.2 1.5E+02 0.0052 24.2 17.7 18 132-150 104-121 (301)
122 1wp5_A Topoisomerase IV; broke 39.4 1.8E+02 0.0061 24.8 22.5 232 17-271 39-282 (323)
123 1zvu_A Topoisomerase IV subuni 37.5 2.9E+02 0.0098 26.6 12.0 124 128-272 510-639 (716)
124 3q7x_A De novo designed beta-t 36.5 1.2E+02 0.0042 22.0 10.7 105 73-201 8-114 (132)
125 3p6j_A De novo designed beta-t 34.4 1.4E+02 0.0048 22.1 12.5 66 123-201 30-97 (142)
126 3iz6_a 40S ribosomal protein R 33.4 2.2E+02 0.0076 24.1 20.6 252 16-312 66-325 (380)
127 3f3f_A Nucleoporin SEH1; struc 33.3 1.9E+02 0.0065 23.3 24.7 120 72-204 13-142 (351)
128 4asc_A Kelch repeat and BTB do 33.2 2E+02 0.007 23.6 14.8 18 247-265 140-157 (315)
129 2pbi_B Guanine nucleotide-bind 32.5 2.2E+02 0.0077 23.9 26.1 237 19-312 109-353 (354)
130 3frx_A Guanine nucleotide-bind 32.4 2.1E+02 0.0072 23.5 24.6 217 30-312 32-263 (319)
131 3dm0_A Maltose-binding peripla 32.2 3.2E+02 0.011 25.6 25.4 184 29-266 396-592 (694)
132 1zvu_A Topoisomerase IV subuni 32.0 3.5E+02 0.012 26.0 10.8 123 24-157 510-639 (716)
133 3fm0_A Protein CIAO1; WDR39,SG 30.6 2.4E+02 0.0081 23.6 19.2 145 28-202 28-178 (345)
134 1zi0_A DNA gyrase subunit A; b 30.6 2.4E+02 0.0082 23.7 22.2 227 15-268 40-279 (307)
135 2j04_A TAU60, YPL007P, hypothe 30.4 3.4E+02 0.012 25.4 14.1 155 24-204 93-253 (588)
136 1erj_A Transcriptional repress 30.1 2.6E+02 0.0088 23.8 22.2 203 73-316 126-341 (393)
137 3dwl_C Actin-related protein 2 29.7 2.4E+02 0.0084 23.4 22.8 154 20-204 15-176 (377)
138 3e5z_A Putative gluconolactona 28.6 2.3E+02 0.0079 22.8 14.6 64 249-316 221-286 (296)
139 4ggc_A P55CDC, cell division c 28.2 2.3E+02 0.0079 22.7 26.8 136 35-203 42-179 (318)
140 4gqb_B Methylosome protein 50; 27.5 2.8E+02 0.0095 23.3 28.1 191 72-315 84-288 (344)
141 1zvt_A Topoisomerase IV subuni 26.7 2.6E+02 0.0089 22.8 15.2 124 128-272 40-169 (256)
142 1zvt_A Topoisomerase IV subuni 26.6 2.6E+02 0.0089 22.8 16.4 153 135-317 5-164 (256)
143 3dr2_A Exported gluconolactona 24.2 2.9E+02 0.0099 22.5 12.4 63 246-312 239-302 (305)
144 1got_B GT-beta; complex (GTP-b 20.6 3.6E+02 0.012 22.2 26.6 182 30-266 69-257 (340)
No 1
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=2.8e-63 Score=457.94 Aligned_cols=294 Identities=28% Similarity=0.507 Sum_probs=269.7
Q ss_pred hhhhcccccceeeeEEecccCcc-eEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeCccceEEEEcCCcEEE
Q 020659 16 QDIKLGSKLGICKRWISSTLQRR-FAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYA 94 (323)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g~~~~~~lt~~g~v~~ 94 (323)
...+..++||..|+++++ .++ +||+||.|.+||||.++..+...|.++..+.+.+|++|+||..|+++|+++|+||+
T Consensus 67 ~~~i~~va~G~~ht~al~--~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~ 144 (406)
T 4d9s_A 67 GHQIVSVTCGADHTVAYS--QSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQS 144 (406)
T ss_dssp TSCEEEEEECSSEEEEEE--TTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEE
T ss_pred CCCEEEEEeCcceEEEEE--CCCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEE
Confidence 346778899999999887 664 99999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCccccCCCCCCceecceEecCCCC-ceEEEEcCCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecc
Q 020659 95 TGLNDFGQLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVEC 173 (323)
Q Consensus 95 ~G~n~~gqlg~~~~~~~~~~p~~~~~~~~-~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~ 173 (323)
||.|.+||||.+. ......|+++..+.. +|++|+||.+|+++|+++|+||+||.|.++|||.+.... ...|.++..
T Consensus 145 wG~n~~GqLG~g~-~~~~~~p~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~--~~~p~~v~~ 221 (406)
T 4d9s_A 145 WGRNQNGQLGLGD-TEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTD--RLVPERVTS 221 (406)
T ss_dssp EECCTTSTTCSSS-CCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCC--EEEEEECCC
T ss_pred eCCCCCccCCCCC-CCCcccceEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCC--cCccEEecc
Confidence 9999999999985 445677888887665 899999999999999999999999999999999987766 567888888
Q ss_pred cCCceEEEEecCCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCCCeeEEE
Q 020659 174 LSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACI 253 (323)
Q Consensus 174 ~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~l 253 (323)
+...+|++|+||.+|+++|+++|+||+||.|.+||||.+. ......|.++..+...+|++|+||.+|+++|
T Consensus 222 ~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~---------~~~~~~p~~v~~~~~~~v~~i~~G~~hs~al 292 (406)
T 4d9s_A 222 TGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGD---------LEDHLIPHKLEALSNSFISQISGGWRHTMAL 292 (406)
T ss_dssp STTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSS---------CCCEEEEEECGGGTTSCEEEEEECSSEEEEE
T ss_pred cCCceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCCCCC---------CcCccccEEecccCCCCEEEEEecCCEEEEE
Confidence 7778899999999999999999999999999999999987 4556789999888888999999999999999
Q ss_pred ecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecCC--CCeeEEEecCCeeEEEEcCCCEEEeeCCCCCccCCC
Q 020659 254 DENGRVYIFGDRAVDKMLFQEGNHARRPSLISKL--PYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIG 323 (323)
Q Consensus 254 t~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~~--~~i~~v~~G~~~~~~l~~~g~v~~~G~n~~gqLG~G 323 (323)
+++|+||+||.|.++|||.++..+...|++++.+ .+|++|+||.+|+++|+++|+||+||.|.+||||+|
T Consensus 293 t~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~g 364 (406)
T 4d9s_A 293 TSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIG 364 (406)
T ss_dssp ETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSS
T ss_pred cCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEeCCCeEEEEeCCCCEEEecCCCCCccCCC
Confidence 9999999999999999999998888888888754 479999999999999999999999999999999987
No 2
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=4e-63 Score=456.89 Aligned_cols=299 Identities=32% Similarity=0.561 Sum_probs=272.6
Q ss_pred hhhhhhhhhcccccceeeeEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeCccceEEEEcCC
Q 020659 11 KYYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETG 90 (323)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g~~~~~~lt~~g 90 (323)
.+..+...+..+++|..|+++++ ++++||+||.|.+||||.++..+...|.++..+.+.+|++|+||..|+++|+++|
T Consensus 10 ~v~~~~~~v~~ia~G~~hs~al~--~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~g 87 (406)
T 4d9s_A 10 EVTAPPRKVLIISAGASHSVALL--SGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSG 87 (406)
T ss_dssp -----CCCEEEEEECSSEEEEEE--TTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTT
T ss_pred cCCCCccceEEEecCCCeEEEEE--eCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCC
Confidence 34455667788999999999999 8999999999999999999999999999999998889999999999999999986
Q ss_pred -cEEEEeCCCCccccCCCCCCceecceEecCCCC-ceEEEEcCCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccc
Q 020659 91 -CVYATGLNDFGQLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIP 168 (323)
Q Consensus 91 -~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~-~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p 168 (323)
+||+||.|.+||||.+.. .....|.++..+.. +|++|+||.+|+++|+++|+||+||.|.+||||.+.... ...|
T Consensus 88 g~v~~wG~n~~GqLG~g~~-~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~--~~~p 164 (406)
T 4d9s_A 88 MEVYSWGWGDFGRLGHGNS-SDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTED--SLVP 164 (406)
T ss_dssp TEEEEEECCGGGTTCSSSC-CCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCC--EEEE
T ss_pred CEEEEEcCCCCcCCCCCCC-CccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCC--cccc
Confidence 999999999999999854 55678888887665 899999999999999999999999999999999988765 5778
Q ss_pred eEecccCCceEEEEecCCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCCC
Q 020659 169 TKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFL 248 (323)
Q Consensus 169 ~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~ 248 (323)
.++..+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+. ......|.++..+...+|++|+||.+
T Consensus 165 ~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~---------~~~~~~p~~v~~~~~~~i~~va~G~~ 235 (406)
T 4d9s_A 165 QKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGD---------RTDRLVPERVTSTGGEKMSMVACGWR 235 (406)
T ss_dssp EECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSS---------SCCEEEEEECCCSTTCCEEEEEECSS
T ss_pred eEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCC---------CCCcCccEEecccCCceEEEEEECCC
Confidence 889888888999999999999999999999999999999999987 34566788888888789999999999
Q ss_pred eeEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecCCCC--eeEEEecCCeeEEEEcCCCEEEeeCCCCCccCCC
Q 020659 249 HSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPY--SEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIG 323 (323)
Q Consensus 249 ~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~~~~--i~~v~~G~~~~~~l~~~g~v~~~G~n~~gqLG~G 323 (323)
|+++|+++|+||+||.|.++|||.++..+...|.+++.+.+ |++|+||.+|+++|+++|+||+||.|.+||||+|
T Consensus 236 ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g 312 (406)
T 4d9s_A 236 HTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVG 312 (406)
T ss_dssp EEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSS
T ss_pred cEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCC
Confidence 99999999999999999999999999888889999987765 9999999999999999999999999999999986
No 3
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.5e-62 Score=450.63 Aligned_cols=294 Identities=31% Similarity=0.482 Sum_probs=268.9
Q ss_pred hhhhcccccceeeeEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCc--eEEEEeCccceEEEEcCCcEE
Q 020659 16 QDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHS--LKALACGGAHTLFLTETGCVY 93 (323)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~--i~~v~~g~~~~~~lt~~g~v~ 93 (323)
...+..+++|..|+++++ ++++||+||.|.+||||.++.+....|.++..+.+.. +++|+||.+|+++|+++|+||
T Consensus 52 ~~~i~~i~~G~~~~~~l~--~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~ 129 (389)
T 3kci_A 52 TLRPVQLIGGEQTLFAVT--ADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVY 129 (389)
T ss_dssp HTCEEEEEEETTEEEEEE--TTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEE
T ss_pred CCceEEEEeCCCeEEEEc--CCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEE
Confidence 345667899999999999 8999999999999999999999999999999887764 478899999999999999999
Q ss_pred EEeCCCCccccCCCCCCceecceEecCCCC-ceEEEEcCCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEec
Q 020659 94 ATGLNDFGQLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVE 172 (323)
Q Consensus 94 ~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~-~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~ 172 (323)
+||.|.+||||.+.. .....|+++..+.. +|++|+||.+|+++|+++|+||+||.|.+||||.+.... ...|.++.
T Consensus 130 ~wG~n~~GqLG~g~~-~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~--~~~p~~v~ 206 (389)
T 3kci_A 130 SWGEAEDGKLGHGNR-SPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSED--QLKPKLVE 206 (389)
T ss_dssp EEECCGGGTTCSSSC-CCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCC--EEEEEECG
T ss_pred EEeCCCCCcCCCCCC-ccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcc--cccceEec
Confidence 999999999999854 44578888887765 899999999999999999999999999999999988765 67788898
Q ss_pred ccCCceEEEEecCC--CeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCCCee
Q 020659 173 CLSGIFTKQAALGF--EQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHS 250 (323)
Q Consensus 173 ~~~~~~i~~i~~g~--~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~ 250 (323)
.+.+.+|++|+||. .|+++|+++|+||+||.|.+||||.+. ......|.+++.+...+|++|+||.+|+
T Consensus 207 ~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~---------~~~~~~p~~v~~~~~~~v~~v~~G~~hs 277 (389)
T 3kci_A 207 ALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGG---------SDGCKVPMKIDSLTGLGVVKVECGSQFS 277 (389)
T ss_dssp GGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSS---------CCCEEEEEECGGGTTSCEEEEEEETTEE
T ss_pred ccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCC---------CCCccccEEecccCCCcEEEEeCCCCEE
Confidence 88888999999995 899999999999999999999999987 3456679999888888999999999999
Q ss_pred EEEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecCCC--CeeEEEecCCeeEEEEcCCCEEEeeCCCCCccCCC
Q 020659 251 ACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLP--YSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIG 323 (323)
Q Consensus 251 ~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~~~--~i~~v~~G~~~~~~l~~~g~v~~~G~n~~gqLG~G 323 (323)
++|+++|+||+||.|.++|||.+.......|++|+.+. +|++|+||.+|+++|+++|+||+||.|++||||+|
T Consensus 278 ~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g 352 (389)
T 3kci_A 278 VALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG 352 (389)
T ss_dssp EEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSS
T ss_pred EEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCC
Confidence 99999999999999999999999988888999998775 59999999999999999999999999999999987
No 4
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=1.4e-60 Score=441.18 Aligned_cols=293 Identities=25% Similarity=0.401 Sum_probs=257.0
Q ss_pred hhhcccccceeeeEEecccCcceEEEeeCCCCCCCCCCCCC--CeeceeEeccCCCCceEEEEeCccceEEEEcCCcEEE
Q 020659 17 DIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLE--SRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYA 94 (323)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~--~~~~p~~v~~~~~~~i~~v~~g~~~~~~lt~~g~v~~ 94 (323)
..+..++||..|+++++ ++++||+||.|.+||||.+... ....|.++.. ..+|++|+||.+|+++|+++|+||+
T Consensus 59 ~~i~~va~G~~hs~~l~--~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~l--~~~i~~va~G~~hs~alt~~G~v~~ 134 (413)
T 1a12_A 59 EDVVQAEAGGMHTVCLS--KSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVEL--QEKVVQVSAGDSHTAALTDDGRVFL 134 (413)
T ss_dssp SCEEEEEECSSEEEEEE--TTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCC--CSCEEEEEECSSEEEEEETTSCEEE
T ss_pred CCeEEEEeCCCeEEEEc--CCCCEEEEECCCCCCCCCCCCCCccccCCeEecC--CCcEEEEecCCCeEEEEcCCCcEEE
Confidence 45678899999999999 8999999999999999998763 4667888854 2379999999999999999999999
Q ss_pred EeC--CCCccccCCCCCCceecceEecCCCCceEEEEcCCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCc---------
Q 020659 95 TGL--NDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAK--------- 163 (323)
Q Consensus 95 ~G~--n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~--------- 163 (323)
||. |.+||||..........|.++. ...+|++|+||.+|+++|+++|+||+||.|.+||||.......
T Consensus 135 wG~~~n~~GqlG~~~~~~~~~~P~~v~-~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~ 213 (413)
T 1a12_A 135 WGSFRDNNGVIGLLEPMKKSMVPVQVQ-LDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLE 213 (413)
T ss_dssp EECEEETTEEEESSBBTBCEEEEEEEC-CSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHH
T ss_pred eeCCcCCCCccCcCCccccccCCEEec-CCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCcccccccccccccc
Confidence 999 9999999987666666788884 4459999999999999999999999999999999998653221
Q ss_pred ccccceEeccc-----CCceEEEEecCCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCC-
Q 020659 164 VIPIPTKVECL-----SGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEG- 237 (323)
Q Consensus 164 ~~~~p~~~~~~-----~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~- 237 (323)
....|..+... ...+|++|+||.+|+++|+++|+||+||.|.+||||.+.. .....|.++..+.+
T Consensus 214 ~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~---------~~~~~P~~v~~l~~~ 284 (413)
T 1a12_A 214 RLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGT---------ESCFIPQNLTSFKNS 284 (413)
T ss_dssp HHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSC---------SCEEEEEECGGGCCT
T ss_pred ccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCC---------CcccccEEchhccCC
Confidence 12456555543 3467999999999999999999999999999999999874 34578888887765
Q ss_pred -CcEEEEecCCCeeEEEecCCcEEEEeCCCCCcCCcC-CCCCcCCCeeecCCCCeeEEEecCCeeEEEEcCCCEEEeeCC
Q 020659 238 -VKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQ-EGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSN 315 (323)
Q Consensus 238 -~~i~~i~~g~~~~~~lt~~g~ly~wG~n~~gqlg~~-~~~~~~~p~~v~~~~~i~~v~~G~~~~~~l~~~g~v~~~G~n 315 (323)
.+|++|+||.+|+++|+++|+||+||.|.++|||.+ +......|++|+.+.+|++|+||.+|+++|+++|+||+||.|
T Consensus 285 ~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~~v~~v~~G~~hs~alt~~G~v~~wG~n 364 (413)
T 1a12_A 285 TKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMG 364 (413)
T ss_dssp TCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSSSEEEEEECSSEEEEEETTSCEEEEECC
T ss_pred CceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecccCceeEEEECcceEEEEeCCCCEEEecCC
Confidence 579999999999999999999999999999999998 556778899999999999999999999999999999999999
Q ss_pred CCCccCCC
Q 020659 316 ENGCLGIG 323 (323)
Q Consensus 316 ~~gqLG~G 323 (323)
.+||||.|
T Consensus 365 ~~gqLG~g 372 (413)
T 1a12_A 365 TNYQLGTG 372 (413)
T ss_dssp TTSTTCSS
T ss_pred CCCCCCCC
Confidence 99999986
No 5
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.2e-60 Score=437.99 Aligned_cols=282 Identities=29% Similarity=0.497 Sum_probs=251.9
Q ss_pred EEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeCccceEEEEcCCcEEEEeCCCCccccCCCCC
Q 020659 30 WISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENI 109 (323)
Q Consensus 30 ~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~ 109 (323)
.+...+.+++||+||.|.+||||.++......|.++..+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+..
T Consensus 12 ~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~- 90 (389)
T 3kci_A 12 ENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGT- 90 (389)
T ss_dssp ---------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSS-
T ss_pred cceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCc-
Confidence 3344459999999999999999999888899999999888889999999999999999999999999999999999844
Q ss_pred CceecceEecCCCC---ceEEEEcCCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEecCC
Q 020659 110 GYSLEPLRISGLKK---EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF 186 (323)
Q Consensus 110 ~~~~~p~~~~~~~~---~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~ 186 (323)
.....|.++..+.. ++++|+||.+|+++|+++|+||+||.|.+||||.+.... ...|.+++.+.+.+|++|+||.
T Consensus 91 ~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~--~~~p~~v~~l~~~~i~~va~G~ 168 (389)
T 3kci_A 91 ESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSP--CDRPRVIESLRGIEVVDVAAGG 168 (389)
T ss_dssp CCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCC--EEEEEECGGGTTSCEEEEEECS
T ss_pred CCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCcc--CcCCeEecccCCCeEEEEEeCc
Confidence 55677888886654 568899999999999999999999999999999987765 6788899888888999999999
Q ss_pred CeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCC--CeeEEEecCCcEEEEeC
Q 020659 187 EQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF--LHSACIDENGRVYIFGD 264 (323)
Q Consensus 187 ~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~--~~~~~lt~~g~ly~wG~ 264 (323)
.|+++|+++|+||+||.|.+||||.+. ......|.++..+...+|++|+||. +|+++|+++|+||+||.
T Consensus 169 ~hs~alt~~G~v~~wG~n~~GqLG~~~---------~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~ 239 (389)
T 3kci_A 169 AHSACVTAAGDLYTWGKGRYGRLGHSD---------SEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGD 239 (389)
T ss_dssp SEEEEEETTSCEEEEECCGGGTTCSSS---------CCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEEC
T ss_pred CeEEEEeCCCeEEEeCCCCCCCcCCCC---------CcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeC
Confidence 999999999999999999999999987 3556789999888888999999995 89999999999999999
Q ss_pred CCCCcCCcCCCCCcCCCeeecCCC--CeeEEEecCCeeEEEEcCCCEEEeeCCCCCccCCC
Q 020659 265 RAVDKMLFQEGNHARRPSLISKLP--YSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIG 323 (323)
Q Consensus 265 n~~gqlg~~~~~~~~~p~~v~~~~--~i~~v~~G~~~~~~l~~~g~v~~~G~n~~gqLG~G 323 (323)
|.++|||.+.......|.+++.+. +|++|+||.+|+++|+++|+||+||.|.+||||.|
T Consensus 240 n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g 300 (389)
T 3kci_A 240 GDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHG 300 (389)
T ss_dssp CGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSS
T ss_pred CCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCC
Confidence 999999999888888899998776 49999999999999999999999999999999986
No 6
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-59 Score=440.53 Aligned_cols=298 Identities=23% Similarity=0.369 Sum_probs=255.6
Q ss_pred hhhhcccccceeeeEEecccCcceEEEeeCCCCCCCCCCCCCC-----------------------eeceeEecc--C--
Q 020659 16 QDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLES-----------------------RWRPVVCSA--F-- 68 (323)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~-----------------------~~~p~~v~~--~-- 68 (323)
...+..++||..|+++++ .+++||+||.|+.||||.+.... ...|.+++. +
T Consensus 66 ~~~i~~va~G~~Ht~alt--~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~ 143 (473)
T 3of7_A 66 EAKIISFAVGGMHTLALD--EESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPP 143 (473)
T ss_dssp TTCEEEEEECSSEEEEEE--TTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHH
T ss_pred CCCEEEEEeCCCeEEEEe--cCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCc
Confidence 446778899999999999 89999999999999999987654 457888875 4
Q ss_pred --CCCceEEEEeCccceEEEEcCCcEEEEeC--CCCccccCCCC-CCceecceEecCCCC-ceEEEEcCCCeEEEEEcCC
Q 020659 69 --EKHSLKALACGGAHTLFLTETGCVYATGL--NDFGQLGISEN-IGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDG 142 (323)
Q Consensus 69 --~~~~i~~v~~g~~~~~~lt~~g~v~~~G~--n~~gqlg~~~~-~~~~~~p~~~~~~~~-~i~~i~~g~~~~~~lt~~g 142 (323)
.+.+|++|+||.+|+++|+++|+||+||. +..||||.... ......|.++..+.. +|++|+||.+|+++|+++|
T Consensus 144 ~~~~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G 223 (473)
T 3of7_A 144 LAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEG 223 (473)
T ss_dssp HHTTCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTS
T ss_pred ccCCCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCC
Confidence 36789999999999999999999999998 67899998543 345678898887764 7999999999999999999
Q ss_pred cEEEEeCCCCCCCCCCCCCCc--ccccceEecccCCceEEEEecCCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCcccc
Q 020659 143 ELYMWGKNSNGQLGLGKKAAK--VIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF 220 (323)
Q Consensus 143 ~v~~~G~n~~gqlg~~~~~~~--~~~~p~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~ 220 (323)
+||+||.|.+||||.+..... ....|..+.. .+|++|+||.+|+++|+++|+||+||.|.+||||.+.....
T Consensus 224 ~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~---~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~--- 297 (473)
T 3of7_A 224 MVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGL---RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVED--- 297 (473)
T ss_dssp CEEEEECCTTSTTSSCCCGGGTTTTCSCEECSC---CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCT---
T ss_pred eEEEEeCCCCCCCCCCccccccccccCceecCC---cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccC---
Confidence 999999999999998765431 2345655543 46999999999999999999999999999999998874311
Q ss_pred ccccccccceeecccCCCcEEEEecCCCeeEEEecCCcEEEEeCCCCCcCCcCCC--------------CCcCCCeeecC
Q 020659 221 LRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEG--------------NHARRPSLISK 286 (323)
Q Consensus 221 ~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~ly~wG~n~~gqlg~~~~--------------~~~~~p~~v~~ 286 (323)
......|.++..+...+|++|+||.+|+++|+++|+||+||.|.++|||.+.. .....|++++.
T Consensus 298 --~~~~~~P~~v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~ 375 (473)
T 3of7_A 298 --GALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNN 375 (473)
T ss_dssp --TCEEEEEEECCCCTTCCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCS
T ss_pred --CceeeccccccccCCccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCC
Confidence 23456788888888789999999999999999999999999999999997642 22356788888
Q ss_pred CCCeeEEEecCCeeEEEEcCCCEEEeeCCCCCccCCC
Q 020659 287 LPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIG 323 (323)
Q Consensus 287 ~~~i~~v~~G~~~~~~l~~~g~v~~~G~n~~gqLG~G 323 (323)
+.+|++|+||.+|+++|+++|+||+||.|.+||||+|
T Consensus 376 ~~~v~~Ia~G~~hs~al~~~G~vy~wG~n~~GqLG~g 412 (473)
T 3of7_A 376 VPKFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLG 412 (473)
T ss_dssp SCCEEEEEECSSEEEEEETTSCEEEEECCTTCTTCCC
T ss_pred CCceEEEEeCCCeEEEEeCCCcEEEeeCCCCCCCCCC
Confidence 8799999999999999999999999999999999987
No 7
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=1e-58 Score=428.75 Aligned_cols=294 Identities=28% Similarity=0.439 Sum_probs=248.8
Q ss_pred cccceeeeEEecccCcceEEEeeCCCCCCCCCCCCCC-eeceeEeccCCCCceEEEEeCccceEEEEcCCcEEEEeCCCC
Q 020659 22 SKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLES-RWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDF 100 (323)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~-~~~p~~v~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~ 100 (323)
...+..|+++++ .++.||+||.|.+||||.++... ...|.++..+ .+|++|+||..|+++|+++|+||+||.|.+
T Consensus 13 ~~~~~~h~~~l~--~~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~~--~~i~~va~G~~hs~~l~~~G~v~~wG~n~~ 88 (413)
T 1a12_A 13 KKVKVSHRSHST--EPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP--EDVVQAEAGGMHTVCLSKSGQVYSFGCNDE 88 (413)
T ss_dssp CCCCCCCTTCCC--CCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCS--SCEEEEEECSSEEEEEETTSCEEEEECCTT
T ss_pred hhhccccceeec--CCCcEEEEECCCCCcCCCCCCccccccceEccCC--CCeEEEEeCCCeEEEEcCCCCEEEEECCCC
Confidence 344567888877 99999999999999999998665 6788888854 579999999999999999999999999999
Q ss_pred ccccCCCCC-CceecceEecCCCCceEEEEcCCCeEEEEEcCCcEEEEeC--CCCCCCCCCCCCCcccccceEecccCCc
Q 020659 101 GQLGISENI-GYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGK--NSNGQLGLGKKAAKVIPIPTKVECLSGI 177 (323)
Q Consensus 101 gqlg~~~~~-~~~~~p~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~--n~~gqlg~~~~~~~~~~~p~~~~~~~~~ 177 (323)
||||.+... .....|.++. +..+|++|+||.+|+++|+++|+||+||. |.+||||...... ....|.++ +...
T Consensus 89 GqLG~~~~~~~~~~~P~~v~-l~~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~-~~~~P~~v--~~~~ 164 (413)
T 1a12_A 89 GALGRDTSVEGSEMVPGKVE-LQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMK-KSMVPVQV--QLDV 164 (413)
T ss_dssp STTCSCCCSTTGGGSCEECC-CCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTB-CEEEEEEE--CCSS
T ss_pred CCCCCCCCCCccccCCeEec-CCCcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccc-cccCCEEe--cCCC
Confidence 999998652 3456788874 55699999999999999999999999999 9999999876543 23457776 3455
Q ss_pred eEEEEecCCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCcccc--ccccccccceeeccc-----CCCcEEEEecCCCee
Q 020659 178 FTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF--LRSTSEYTPRLIKEL-----EGVKVKIAAAGFLHS 250 (323)
Q Consensus 178 ~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~--~~~~~~~~p~~i~~~-----~~~~i~~i~~g~~~~ 250 (323)
+|++|+||.+|+++|+++|+||+||.|.+||||.+........ ........|+.+... ...+|++|+||.+|+
T Consensus 165 ~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs 244 (413)
T 1a12_A 165 PVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFT 244 (413)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEE
T ss_pred CEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEE
Confidence 7999999999999999999999999999999998753211000 001123567655542 346899999999999
Q ss_pred EEEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecCCCC----eeEEEecCCeeEEEEcCCCEEEeeCCCCCccCCC
Q 020659 251 ACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPY----SEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIG 323 (323)
Q Consensus 251 ~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~~~~----i~~v~~G~~~~~~l~~~g~v~~~G~n~~gqLG~G 323 (323)
++|+++|+||+||.|.++|||.+.......|.+|+.+.+ |++|+||.+|+++|+++|+||+||.|.+||||.|
T Consensus 245 ~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g 321 (413)
T 1a12_A 245 FAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLG 321 (413)
T ss_dssp EEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSC
T ss_pred EEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCC
Confidence 999999999999999999999998888889999987765 9999999999999999999999999999999986
No 8
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=5.9e-58 Score=424.98 Aligned_cols=289 Identities=20% Similarity=0.292 Sum_probs=250.7
Q ss_pred hcccccceeeeEEecccCcceEEEeeCCCCCCCCCCCCCC--eeceeEeccCCCCceEEEEeCccceEEEEcCCcEEEEe
Q 020659 19 KLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLES--RWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATG 96 (323)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~--~~~p~~v~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G 96 (323)
+..++||..|+++++ .+++||+||.|.+||||.+.... ...|.++... .+|++|+||.+|+++|+++|+||+||
T Consensus 77 v~~va~G~~h~~~l~--~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~--~~i~~va~G~~hs~al~~~G~v~~wG 152 (423)
T 3mvd_K 77 AVDISAGGMHNLVLT--KSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLP--GKALCISAGDSHSACLLEDGRVFAWG 152 (423)
T ss_dssp EEEEEECSSEEEEEE--TTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCS--SCEEEEEECSSEEEEEETTSCEEEEE
T ss_pred ceEEeeCCCeEEEEe--CCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCC--CCEEEEEcCcCeEEEEeCCCeEEEEe
Confidence 478899999999999 89999999999999999987664 6778887743 46999999999999999999999999
Q ss_pred C--CCCccccCCCCCCceecceEecCCCCceEEEEcCCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCC---------ccc
Q 020659 97 L--NDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAA---------KVI 165 (323)
Q Consensus 97 ~--n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~---------~~~ 165 (323)
. |.+||||..... ....|..+. ...+|++|+||.+|+++|+++|+||+||.|.+||||.+.... ...
T Consensus 153 ~~~n~~GqlG~~~~~-~~~~p~~~~-~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~ 230 (423)
T 3mvd_K 153 SFRDSHGNMGLTIDG-NKRTPIDLM-EGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDL 230 (423)
T ss_dssp CEECSSSEEESBTTB-CEEEEEESS-TTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTT
T ss_pred CCCCCCCCcCcCCCC-CCceeeEec-CCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccc
Confidence 9 999999988543 345555553 234899999999999999999999999999999999876532 235
Q ss_pred ccceEecccCCceEEEEecCCCeEEEE-ECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEe
Q 020659 166 PIPTKVECLSGIFTKQAALGFEQSVAV-TGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAA 244 (323)
Q Consensus 166 ~~p~~~~~~~~~~i~~i~~g~~~~~~l-~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~ 244 (323)
..|.++......+|++|+||.+|++++ +++|+||+||.|.+||||.+... ......|.++. ..+|++|+
T Consensus 231 ~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~-------~~~~~~p~~~~---~~~v~~ia 300 (423)
T 3mvd_K 231 LRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKG-------KEFALTPIKTE---LKDIRHIA 300 (423)
T ss_dssp SSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTT-------CSEEEEEEEEC---CCSEEEEE
T ss_pred cCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCC-------CceeeeeEEcC---CCCeEEEE
Confidence 678888877778899999999999999 59999999999999999996532 33445566654 34799999
Q ss_pred cCCCeeEEEecCCcEEEEeCCCCCcCCcCCCCC-cCCCeeecCCC-CeeEEEecCCeeEEEEcCCCEEEeeCCCCCccCC
Q 020659 245 AGFLHSACIDENGRVYIFGDRAVDKMLFQEGNH-ARRPSLISKLP-YSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGI 322 (323)
Q Consensus 245 ~g~~~~~~lt~~g~ly~wG~n~~gqlg~~~~~~-~~~p~~v~~~~-~i~~v~~G~~~~~~l~~~g~v~~~G~n~~gqLG~ 322 (323)
||.+|+++|+++|+||+||.|.++|||.++..+ ...|++++.+. +|++|+||.+|+++|+++|+||+||.|.+||||+
T Consensus 301 ~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~ 380 (423)
T 3mvd_K 301 GGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGV 380 (423)
T ss_dssp ECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETTEEEEEETTSCEEEEECCTTSCSSS
T ss_pred cccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCCeEEEEcCCCCEEEECCCCCCCCCC
Confidence 999999999999999999999999999988755 56788898887 6999999999999999999999999999999998
Q ss_pred C
Q 020659 323 G 323 (323)
Q Consensus 323 G 323 (323)
|
T Consensus 381 g 381 (423)
T 3mvd_K 381 G 381 (423)
T ss_dssp S
T ss_pred C
Confidence 6
No 9
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-58 Score=435.05 Aligned_cols=298 Identities=26% Similarity=0.393 Sum_probs=254.1
Q ss_pred hhhhcccccceeeeEEecccCcceEEEeeCCCCCCCCCCCC---CCeeceeEeccC--CCCceEEEEeCccceEEEEcCC
Q 020659 16 QDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSL---ESRWRPVVCSAF--EKHSLKALACGGAHTLFLTETG 90 (323)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~n~~gqlG~~~~---~~~~~p~~v~~~--~~~~i~~v~~g~~~~~~lt~~g 90 (323)
............|+++++ .+++||+||.|.+||||.++. .....|..++.+ ...+|++|+||..|+++|+++|
T Consensus 9 ~~~~~~~~~~~~h~~~~~--~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G 86 (473)
T 3of7_A 9 MSHIINAQEDYKHMYLSV--QPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEES 86 (473)
T ss_dssp CTTCCCCGGGGHHHHCCS--SCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTC
T ss_pred hhhhhhhcccccccccCC--CCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEeCCCeEEEEecCC
Confidence 344455566778888888 899999999999999999984 346778888776 5668999999999999999999
Q ss_pred cEEEEeCCCCccccCCCCCCc----------------------eecceEecC--CC-----CceEEEEcCCCeEEEEEcC
Q 020659 91 CVYATGLNDFGQLGISENIGY----------------------SLEPLRISG--LK-----KEVVQISTGYHHSSAITVD 141 (323)
Q Consensus 91 ~v~~~G~n~~gqlg~~~~~~~----------------------~~~p~~~~~--~~-----~~i~~i~~g~~~~~~lt~~ 141 (323)
+||+||.|.+||||.+..... ...|.+++. ++ .+|++|+||.+|+++|+++
T Consensus 87 ~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~ 166 (473)
T 3of7_A 87 NVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSN 166 (473)
T ss_dssp CEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETT
T ss_pred eEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeCC
Confidence 999999999999998854331 457888875 43 5999999999999999999
Q ss_pred CcEEEEeC--CCCCCCCCCCCCCcccccceEecccCCceEEEEecCCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccc
Q 020659 142 GELYMWGK--NSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILG 219 (323)
Q Consensus 142 g~v~~~G~--n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~ 219 (323)
|+||+||. +.+||||...........|.+++.+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+.....
T Consensus 167 G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~-- 244 (473)
T 3of7_A 167 GEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERF-- 244 (473)
T ss_dssp SCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGG--
T ss_pred CeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCccccc--
Confidence 99999998 67899998666655678899999888888999999999999999999999999999999999864321
Q ss_pred cccccccccceeecccCCCcEEEEecCCCeeEEEecCCcEEEEeCCCCCcCCcCCCC----CcCCCeeecCCC--CeeEE
Q 020659 220 FLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGN----HARRPSLISKLP--YSEEV 293 (323)
Q Consensus 220 ~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~ly~wG~n~~gqlg~~~~~----~~~~p~~v~~~~--~i~~v 293 (323)
......|.++.. .+|++|+||.+|+++|+++|+||+||.|.++|||.+... ....|++|+.+. +|++|
T Consensus 245 ---~~~~~~p~~~~~---~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~i 318 (473)
T 3of7_A 245 ---RLKTLDPRPFGL---RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSI 318 (473)
T ss_dssp ---TTTTCSCEECSC---CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEE
T ss_pred ---cccccCceecCC---cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCCccEEEE
Confidence 123455666543 479999999999999999999999999999999988754 345688888765 69999
Q ss_pred EecCCeeEEEEcCCCEEEeeCCCCCccCCC
Q 020659 294 VCGGYHTCVLTSGGELYTWGSNENGCLGIG 323 (323)
Q Consensus 294 ~~G~~~~~~l~~~g~v~~~G~n~~gqLG~G 323 (323)
+||.+|+++|+++|+||+||.|.+||||.|
T Consensus 319 a~G~~hs~~lt~~G~v~~wG~n~~GqLG~~ 348 (473)
T 3of7_A 319 AAGEHHSLILSQDGDLYSCGRLDMFEVGIP 348 (473)
T ss_dssp EECSSEEEEEETTSCEEEEEECTTCTTCCC
T ss_pred EeCCCeEEEEeCCCeEEEEECCCCCccCCC
Confidence 999999999999999999999999999975
No 10
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=8.2e-58 Score=424.00 Aligned_cols=301 Identities=25% Similarity=0.332 Sum_probs=252.3
Q ss_pred hhhhhhhcccccceeeeEEecccCcceEEEeeCCCCCCCCCCCC-CCeeceeEeccCCCCceEEEEeCccceEEEEcCCc
Q 020659 13 YLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSL-ESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGC 91 (323)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~n~~gqlG~~~~-~~~~~p~~v~~~~~~~i~~v~~g~~~~~~lt~~g~ 91 (323)
.++...+..++++..|.++++ ++++||+||.|.+||||.++. .....|.++..+++ |++|+||..|+++|+++|+
T Consensus 20 ~~~~~~~~~ia~g~~~~~~l~--~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~--v~~va~G~~h~~~l~~~G~ 95 (423)
T 3mvd_K 20 QPPKAKRARIAFHLELPKRRT--VLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPD--AVDISAGGMHNLVLTKSGD 95 (423)
T ss_dssp ---------CCCCCCCCCCCC--CCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCSS--EEEEEECSSEEEEEETTSC
T ss_pred CCccceeeEEecCCccceeec--CCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCCC--ceEEeeCCCeEEEEeCCCe
Confidence 445566678899999999998 999999999999999999965 45678888887765 8999999999999999999
Q ss_pred EEEEeCCCCccccCCCCCC-ceecceEecCCCCceEEEEcCCCeEEEEEcCCcEEEEeC--CCCCCCCCCCCCCcccccc
Q 020659 92 VYATGLNDFGQLGISENIG-YSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGK--NSNGQLGLGKKAAKVIPIP 168 (323)
Q Consensus 92 v~~~G~n~~gqlg~~~~~~-~~~~p~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~--n~~gqlg~~~~~~~~~~~p 168 (323)
||+||.|.+||||.+.... ....|.++. +..+|++|+||.+|+++|+++|+||+||. |.+||||...... .+.|
T Consensus 96 v~~wG~n~~GqLG~~~~~~~~~~~P~~v~-~~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~--~~~p 172 (423)
T 3mvd_K 96 IYSFGCNDEGALGRDTSEDGSESKPDLID-LPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGN--KRTP 172 (423)
T ss_dssp EEEEECCSSSTTCSCCCSTTSSSSCEECC-CSSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBC--EEEE
T ss_pred EEEeECCCCcCCCCCCcCCccccCCeEEc-CCCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCC--Ccee
Confidence 9999999999999986543 356788887 45599999999999999999999999999 9999999877655 3445
Q ss_pred eEecccCCceEEEEecCCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCcccc--ccccccccceeecccCCCcEEEEecC
Q 020659 169 TKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF--LRSTSEYTPRLIKELEGVKVKIAAAG 246 (323)
Q Consensus 169 ~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~--~~~~~~~~p~~i~~~~~~~i~~i~~g 246 (323)
.++ +...+|++|+||.+|+++|+++|+||+||.|.+||||.+........ ........|.++......+|++|+||
T Consensus 173 ~~~--~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g 250 (423)
T 3mvd_K 173 IDL--MEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWAT 250 (423)
T ss_dssp EES--STTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEE
T ss_pred eEe--cCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEEC
Confidence 444 45668999999999999999999999999999999999875432211 11235568888887777889999999
Q ss_pred CCeeEEE-ecCCcEEEEeCCCCCcCCcCCC--CCcCCCeeecCCCCeeEEEecCCeeEEEEcCCCEEEeeCCCCCccCCC
Q 020659 247 FLHSACI-DENGRVYIFGDRAVDKMLFQEG--NHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIG 323 (323)
Q Consensus 247 ~~~~~~l-t~~g~ly~wG~n~~gqlg~~~~--~~~~~p~~v~~~~~i~~v~~G~~~~~~l~~~g~v~~~G~n~~gqLG~G 323 (323)
.+|++++ +++|+||+||.|.++|||.+.. .....|++++ +.+|++|+||.+|+++|+++|+||+||.|.+||||.|
T Consensus 251 ~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~-~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g 329 (423)
T 3mvd_K 251 NYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE-LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLG 329 (423)
T ss_dssp TTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC-CCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSS
T ss_pred CcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC-CCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCC
Confidence 9999999 6999999999999999998543 3455677776 7789999999999999999999999999999999986
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=1.3e-49 Score=348.46 Aligned_cols=228 Identities=24% Similarity=0.360 Sum_probs=195.6
Q ss_pred hhcccccceeeeEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeCccceEEEEcCCcEEEEeC
Q 020659 18 IKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGL 97 (323)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~ 97 (323)
.+..++||..|+++++ +++||+||.|.+||||.+. . ...+|++|+||.+|+++|+ +|+||+||.
T Consensus 25 ~i~~ia~G~~h~~~l~---~G~v~~wG~n~~Gqlg~p~--------~----~~~~i~~ia~G~~hs~~l~-~G~v~~wG~ 88 (282)
T 3qhy_B 25 GVDAIAGGYFHGLALK---GGKVLGWGANLNGQLTMPA--------A----TQSGVDAIAAGNYHSLALK-DGEVIAWGG 88 (282)
T ss_dssp SCCEEEECSSEEEEEE---TTEEEEEECCSSSTTSCCG--------G----GGSCCCEEEECSSEEEEEE-TTEEEEEEC
T ss_pred CCcEEEeCCCeEEEEE---CCEEEEEeCCCCCCCCCCc--------c----CCCCEEEEEeCCCEEEEEE-CCEEEEeeC
Confidence 4678899999999983 7999999999999999521 1 1246999999999999996 999999999
Q ss_pred CCCccccCCCCCCceecceEecCCCCceEEEEcCCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCc
Q 020659 98 NDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGI 177 (323)
Q Consensus 98 n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~ 177 (323)
|.+||||.+ ..+ ..+|++|+||.+|+++|+ +|+||+||.|.++|||... + ...
T Consensus 89 n~~Gqlg~P---------~~~---~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~--------~------~~~ 141 (282)
T 3qhy_B 89 NEDGQTTVP---------AEA---RSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPA--------E------AQS 141 (282)
T ss_dssp CTTSTTCCC---------GGG---SSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCG--------G------GGS
T ss_pred CCCCCCCCC---------ccc---CCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCc--------c------CCC
Confidence 999999853 222 248999999999999999 9999999999999998321 1 123
Q ss_pred eEEEEecCCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCCCeeEEEecCC
Q 020659 178 FTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENG 257 (323)
Q Consensus 178 ~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g 257 (323)
+|++|+||.+|+++|+ +|+||+||.|.+||||. |.++ ..+|++|+||.+|+++| ++|
T Consensus 142 ~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~-----------------p~~~----~~~v~~i~~G~~hs~al-~~G 198 (282)
T 3qhy_B 142 GVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTV-----------------PAEA----QSGVDDVAGGIFHSLAL-KDG 198 (282)
T ss_dssp SEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSC-----------------CGGG----GSSEEEEEECSSEEEEE-ETT
T ss_pred CeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCC-----------------ceec----CCCeEEEEecCCEEEEE-ECC
Confidence 5999999999999999 89999999999999973 2111 24799999999999999 899
Q ss_pred cEEEEeCCCCCcCCcCCCCCcCCCeeecCCCCeeEEEecCCeeEEEEcCCCEEEeeCCCCCccCC
Q 020659 258 RVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGI 322 (323)
Q Consensus 258 ~ly~wG~n~~gqlg~~~~~~~~~p~~v~~~~~i~~v~~G~~~~~~l~~~g~v~~~G~n~~gqLG~ 322 (323)
+||+||.|.++|||.+. +.+.+|++|+||.+|+++|+ +|+||+||.|.++|+++
T Consensus 199 ~v~~wG~n~~gqlg~p~----------~~~~~v~~i~~G~~h~~al~-~g~v~~wG~n~~gq~~v 252 (282)
T 3qhy_B 199 KVIAWGDNRYKQTTVPT----------EALSGVSAIASGEWYSLALK-NGKVIAWGSSRTAPSSV 252 (282)
T ss_dssp EEEEEECCTTSTTCCCG----------GGGSSCCEEEECSSCEEEEE-TTEEEEESTTCCCCGGG
T ss_pred eEEEEECCCCCCCCCCc----------ccCCCceEEEcCCCEEEEEE-CCEEEEecCCCCccccC
Confidence 99999999999998432 33457999999999999999 99999999999999975
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=1.9e-45 Score=322.11 Aligned_cols=211 Identities=27% Similarity=0.399 Sum_probs=177.1
Q ss_pred eEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeCccceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEe
Q 020659 39 FAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRI 118 (323)
Q Consensus 39 ~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~ 118 (323)
+||+||.|+..++... ++..+ .+|++|+||..|+++|+ +|+||+||.|.+||||.+. .
T Consensus 3 ~v~~WG~n~~~~~~~~---------p~~~~--~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~---------~- 60 (282)
T 3qhy_B 3 SVVAWGGNNDWGEATV---------PAEAQ--SGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPA---------A- 60 (282)
T ss_dssp EEEEECSCCTTSTTCC---------CGGGS--SSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCG---------G-
T ss_pred EEEEeCCCCCcCcccC---------Ccccc--CCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCc---------c-
Confidence 5999999975554422 22222 36999999999999998 9999999999999999531 1
Q ss_pred cCCCCceEEEEcCCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEecCCCeEEEEECCCCE
Q 020659 119 SGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKV 198 (323)
Q Consensus 119 ~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v 198 (323)
...+|++|+||.+|+++|+ +|+||+||.|.++|||. |.++ ..+|++|+||.+|+++|+ +|+|
T Consensus 61 --~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~----------P~~~----~~~v~~ia~G~~hs~al~-~G~v 122 (282)
T 3qhy_B 61 --TQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV----------PAEA----RSGVDAIAAGAWASYALK-DGKV 122 (282)
T ss_dssp --GGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC----------CGGG----SSSEEEEEEETTEEEEEE-TTEE
T ss_pred --CCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC----------Cccc----CCCeEEEECcCCEEEEEe-CCeE
Confidence 1238999999999999996 99999999999999984 2222 136999999999999999 9999
Q ss_pred EEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCCCeeEEEecCCcEEEEeCCCCCcCCcCCCCCc
Q 020659 199 LSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHA 278 (323)
Q Consensus 199 ~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~ 278 (323)
|+||.|.+||||.... ...+|++|+||.+|+++|+ +|+||+||.|.++|||.
T Consensus 123 ~~wG~n~~gqlg~~~~---------------------~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~------ 174 (282)
T 3qhy_B 123 IAWGDDSDGQTTVPAE---------------------AQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTV------ 174 (282)
T ss_dssp EEEECCTTSTTSCCGG---------------------GGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSC------
T ss_pred EEecCCCCCcCCCCcc---------------------CCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCC------
Confidence 9999999999974210 1236999999999999999 89999999999999983
Q ss_pred CCCeeecCCCCeeEEEecCCeeEEEEcCCCEEEeeCCCCCccCC
Q 020659 279 RRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGI 322 (323)
Q Consensus 279 ~~p~~v~~~~~i~~v~~G~~~~~~l~~~g~v~~~G~n~~gqLG~ 322 (323)
|.++ ..+|++|+||.+|+++| ++|+||+||.|.+||||+
T Consensus 175 --p~~~--~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~ 213 (282)
T 3qhy_B 175 --PAEA--QSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTV 213 (282)
T ss_dssp --CGGG--GSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCC
T ss_pred --ceec--CCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCC
Confidence 3322 35799999999999999 899999999999999986
No 13
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.46 E-value=0.06 Score=48.65 Aligned_cols=188 Identities=8% Similarity=0.012 Sum_probs=115.0
Q ss_pred CceEEEEeCccceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcCCCeEEEEEcCCcEEEEeCC
Q 020659 71 HSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKN 150 (323)
Q Consensus 71 ~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n 150 (323)
..|..++......+.-..||.|..|-.... .....+......|..++......+.-..+|.|..|-..
T Consensus 174 ~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~------------~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~ 241 (435)
T 1p22_A 174 GSVLCLQYDERVIITGSSDSTVRVWDVNTG------------EMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA 241 (435)
T ss_dssp SCEEEEECCSSEEEEEETTSCEEEEESSSC------------CEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECS
T ss_pred CcEEEEEECCCEEEEEcCCCeEEEEECCCC------------cEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCC
Confidence 357778776666677788999999965421 11222333344788888877888888899999999653
Q ss_pred CCCCCCCCCCCCcccccceEecccCCceEEEEecCCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccce
Q 020659 151 SNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPR 230 (323)
Q Consensus 151 ~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~ 230 (323)
... ..............|..++....+.+.-..+|.|..|-.... + ...
T Consensus 242 ~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~-~-------------------~~~ 290 (435)
T 1p22_A 242 SPT-----------DITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTC-E-------------------FVR 290 (435)
T ss_dssp SSS-----------CCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTC-C-------------------EEE
T ss_pred CCC-----------CceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcC-c-------------------EEE
Confidence 211 011111111122357777777778888889999999964321 0 011
Q ss_pred eecccCCCcEEEEecCCCeeEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecC-CCCeeEEEecCCeeEEEEcCCCE
Q 020659 231 LIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK-LPYSEEVVCGGYHTCVLTSGGEL 309 (323)
Q Consensus 231 ~i~~~~~~~i~~i~~g~~~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~-~~~i~~v~~G~~~~~~l~~~g~v 309 (323)
.+.. ....|..++......+.-..||.|..|-......+ ..+.. ...|..++......+.-..||+|
T Consensus 291 ~~~~-~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~-----------~~~~~h~~~v~~~~~~~~~l~sg~~dg~i 358 (435)
T 1p22_A 291 TLNG-HKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACL-----------RVLEGHEELVRCIRFDNKRIVSGAYDGKI 358 (435)
T ss_dssp EEEC-CSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEE-----------EEECCCSSCEEEEECCSSEEEEEETTSCE
T ss_pred EEcC-CCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEE-----------EEEeCCcCcEEEEEecCCEEEEEeCCCcE
Confidence 1111 12356677766667777788999999976542111 11221 22466777766666666789999
Q ss_pred EEee
Q 020659 310 YTWG 313 (323)
Q Consensus 310 ~~~G 313 (323)
..|-
T Consensus 359 ~vwd 362 (435)
T 1p22_A 359 KVWD 362 (435)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8885
No 14
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.14 E-value=0.14 Score=46.26 Aligned_cols=219 Identities=6% Similarity=-0.060 Sum_probs=127.7
Q ss_pred eeEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeCccceEEEEcCCcEEEEeCCCCccccCCC
Q 020659 28 KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISE 107 (323)
Q Consensus 28 ~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~ 107 (323)
...+++-..++.|.+|-..+.- ....+. .....|..++......+.-..||.|..|-....
T Consensus 129 g~~l~sg~~dg~i~vwd~~~~~-----------~~~~~~-~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~------- 189 (445)
T 2ovr_B 129 GNRIVSGSDDNTLKVWSAVTGK-----------CLRTLV-GHTGGVWSSQMRDNIIISGSTDRTLKVWNAETG------- 189 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTCC-----------EEEECC-CCSSCEEEEEEETTEEEEEETTSCEEEEETTTT-------
T ss_pred CCEEEEEECCCcEEEEECCCCc-----------EEEEEc-CCCCCEEEEEecCCEEEEEeCCCeEEEEECCcC-------
Confidence 3445555577888888654211 011111 112346667666677777788999999965321
Q ss_pred CCCceecceEecCCCCceEEEEcCCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEecCCC
Q 020659 108 NIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFE 187 (323)
Q Consensus 108 ~~~~~~~p~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~ 187 (323)
.....+......|..++......+.-..+|.|+.|-..... ....+.. ....|..++....
T Consensus 190 -----~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~-------------~~~~~~~-~~~~v~~~~~~~~ 250 (445)
T 2ovr_B 190 -----ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ-------------CLHVLMG-HVAAVRCVQYDGR 250 (445)
T ss_dssp -----EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCC-------------EEEEEEC-CSSCEEEEEECSS
T ss_pred -----cEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCc-------------EEEEEcC-CcccEEEEEECCC
Confidence 12223333444777787777777788899999999653210 0111111 1235777777677
Q ss_pred eEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCCCeeEEEecCCcEEEEeCCCC
Q 020659 188 QSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAV 267 (323)
Q Consensus 188 ~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~ly~wG~n~~ 267 (323)
..+.-..+|.|..|-.... .....+. .....|..++....+.+.-..||.|..|-....
T Consensus 251 ~l~~~~~dg~i~iwd~~~~--------------------~~~~~~~-~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~ 309 (445)
T 2ovr_B 251 RVVSGAYDFMVKVWDPETE--------------------TCLHTLQ-GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETG 309 (445)
T ss_dssp CEEEEETTSCEEEEEGGGT--------------------EEEEEEC-CCSSCEEEEEECSSEEEEEETTSCEEEEETTTC
T ss_pred EEEEEcCCCEEEEEECCCC--------------------cEeEEec-CCCCceEEEEECCCEEEEEeCCCeEEEEECCCC
Confidence 7777888999999953210 0111111 122357777776667777788999999976542
Q ss_pred CcCCcCCCCCcCCCeeecC-CCCeeEEEecCCeeEEEEcCCCEEEeeCCC
Q 020659 268 DKMLFQEGNHARRPSLISK-LPYSEEVVCGGYHTCVLTSGGELYTWGSNE 316 (323)
Q Consensus 268 gqlg~~~~~~~~~p~~v~~-~~~i~~v~~G~~~~~~l~~~g~v~~~G~n~ 316 (323)
..+ ..+.. ...+..+.......+.-..||.|..|-..+
T Consensus 310 ~~~-----------~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~ 348 (445)
T 2ovr_B 310 NCI-----------HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKT 348 (445)
T ss_dssp CEE-----------EEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred CEE-----------EEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCC
Confidence 111 11111 123556666666666667788888886543
No 15
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.09 E-value=0.15 Score=45.94 Aligned_cols=218 Identities=6% Similarity=-0.039 Sum_probs=128.3
Q ss_pred eEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeCccceEEEEcCCcEEEEeCCCCccccCCCC
Q 020659 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISEN 108 (323)
Q Consensus 29 ~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~ 108 (323)
..+++-..++.|++|-.... .....+. .....|..++......+.-..||.|..|-....
T Consensus 170 ~~l~s~~~dg~i~vwd~~~~-----------~~~~~~~-~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~-------- 229 (445)
T 2ovr_B 170 NIIISGSTDRTLKVWNAETG-----------ECIHTLY-GHTSTVRCMHLHEKRVVSGSRDATLRVWDIETG-------- 229 (445)
T ss_dssp TEEEEEETTSCEEEEETTTT-----------EEEEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEESSSC--------
T ss_pred CEEEEEeCCCeEEEEECCcC-----------cEEEEEC-CCCCcEEEEEecCCEEEEEeCCCEEEEEECCCC--------
Confidence 34555557778888865421 1111111 122357777777777777888999999965321
Q ss_pred CCceecceEecCCCCceEEEEcCCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEecCCCe
Q 020659 109 IGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQ 188 (323)
Q Consensus 109 ~~~~~~p~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~ 188 (323)
.....+......|..++......+.-..+|.|..|-.... .....+.. ....|..+.....+
T Consensus 230 ----~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~-------------~~~~~~~~-~~~~v~~~~~~~~~ 291 (445)
T 2ovr_B 230 ----QCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE-------------TCLHTLQG-HTNRVYSLQFDGIH 291 (445)
T ss_dssp ----CEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGT-------------EEEEEECC-CSSCEEEEEECSSE
T ss_pred ----cEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCC-------------cEeEEecC-CCCceEEEEECCCE
Confidence 1112233334477777776777777788999999954210 11111121 12357777777777
Q ss_pred EEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCCCeeEEEecCCcEEEEeCCCCC
Q 020659 189 SVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVD 268 (323)
Q Consensus 189 ~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~ly~wG~n~~g 268 (323)
.+.-..+|.|..|-..... ....+.. ....+..++......+.-..||.|..|-.....
T Consensus 292 l~~~~~d~~i~i~d~~~~~--------------------~~~~~~~-~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 350 (445)
T 2ovr_B 292 VVSGSLDTSIRVWDVETGN--------------------CIHTLTG-HQSLTSGMELKDNILVSGNADSTVKIWDIKTGQ 350 (445)
T ss_dssp EEEEETTSCEEEEETTTCC--------------------EEEEECC-CCSCEEEEEEETTEEEEEETTSCEEEEETTTCC
T ss_pred EEEEeCCCeEEEEECCCCC--------------------EEEEEcC-CcccEEEEEEeCCEEEEEeCCCeEEEEECCCCc
Confidence 7788899999999643210 0011111 122456666666667777889999999764421
Q ss_pred cCCcCCCCCcCCCeeec----CCCCeeEEEecCCeeEEEEcCCCEEEeeCCC
Q 020659 269 KMLFQEGNHARRPSLIS----KLPYSEEVVCGGYHTCVLTSGGELYTWGSNE 316 (323)
Q Consensus 269 qlg~~~~~~~~~p~~v~----~~~~i~~v~~G~~~~~~l~~~g~v~~~G~n~ 316 (323)
.+ ..+. ....|..++......+.-..||.|..|-..+
T Consensus 351 ~~-----------~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~ 391 (445)
T 2ovr_B 351 CL-----------QTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKT 391 (445)
T ss_dssp EE-----------EEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred EE-----------EEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCC
Confidence 11 1111 1224677777666666677889999987554
No 16
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.72 E-value=0.31 Score=43.80 Aligned_cols=190 Identities=7% Similarity=0.025 Sum_probs=116.4
Q ss_pred ceEEEEeCccceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcCCCeEEEEEcCCcEEEEeCCC
Q 020659 72 SLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNS 151 (323)
Q Consensus 72 ~i~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~ 151 (323)
.|..++......+.-..||.|..|-.... .....+......|..++......+.-..+|.|..|-...
T Consensus 135 ~v~~~~~d~~~l~~g~~dg~i~iwd~~~~------------~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 135 GVYCLQYDDQKIVSGLRDNTIKIWDKNTL------------ECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNT 202 (435)
T ss_dssp CEEEEECCSSEEEEEESSSCEEEEESSSC------------CEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSS
T ss_pred cEEEEEECCCEEEEEeCCCeEEEEeCCCC------------eEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCC
Confidence 46667666667777788999999954321 122333334457888888666667778899999996532
Q ss_pred CCCCCCCCCCCcccccceEecccCCceEEEEecCCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCcccccccccccccee
Q 020659 152 NGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRL 231 (323)
Q Consensus 152 ~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~ 231 (323)
.. ....+.. ....|..++......+.-..+|.|..|-..... ...+..
T Consensus 203 ~~-------------~~~~~~~-h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~------------------~~~~~~ 250 (435)
T 1p22_A 203 GE-------------MLNTLIH-HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPT------------------DITLRR 250 (435)
T ss_dssp CC-------------EEEEECC-CCSCEEEEECCTTEEEEEETTSCEEEEECSSSS------------------CCEEEE
T ss_pred Cc-------------EEEEEcC-CCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCC------------------Cceeee
Confidence 10 1111111 123588888877888888999999999543210 001111
Q ss_pred ecccCCCcEEEEecCCCeeEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeec-CCCCeeEEEecCCeeEEEEcCCCEE
Q 020659 232 IKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLIS-KLPYSEEVVCGGYHTCVLTSGGELY 310 (323)
Q Consensus 232 i~~~~~~~i~~i~~g~~~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~-~~~~i~~v~~G~~~~~~l~~~g~v~ 310 (323)
...-....|..++......++-..||.|..|-......+ ..+. ....+..+.......+.-..||+|.
T Consensus 251 ~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-----------~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~ 319 (435)
T 1p22_A 251 VLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFV-----------RTLNGHKRGIACLQYRDRLVVSGSSDNTIR 319 (435)
T ss_dssp EECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEE-----------EEEECCSSCEEEEEEETTEEEEEETTSCEE
T ss_pred EecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEE-----------EEEcCCCCcEEEEEeCCCEEEEEeCCCeEE
Confidence 111122357777776667777788999999976542111 1122 2224666776666777777899999
Q ss_pred EeeCCC
Q 020659 311 TWGSNE 316 (323)
Q Consensus 311 ~~G~n~ 316 (323)
.|-..+
T Consensus 320 iwd~~~ 325 (435)
T 1p22_A 320 LWDIEC 325 (435)
T ss_dssp EEETTT
T ss_pred EEECCC
Confidence 887554
No 17
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.67 E-value=0.0039 Score=51.60 Aligned_cols=72 Identities=17% Similarity=0.325 Sum_probs=60.7
Q ss_pred CceEEEEeCccceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcCCCeEEEEEcCCcEEEEeCC
Q 020659 71 HSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKN 150 (323)
Q Consensus 71 ~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n 150 (323)
..|.+|+-.-.|..++--|++++++|.++.||+-.+. ...+..++.+|.++++-+..-..+--||..
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~-------------tagPfla~~AG~~fTVTVn~~nyv~FWGDS 375 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDD-------------HAGPYIQLAAGHNFTVTVNTLNQVMFWGDS 375 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCG-------------GGCCEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCC-------------CcchHHhHhccCCeEEEEeceeeEEEecCC
Confidence 4588899999999999999999999999999976552 223789999999999999999999999976
Q ss_pred CCCCC
Q 020659 151 SNGQL 155 (323)
Q Consensus 151 ~~gql 155 (323)
..+-|
T Consensus 376 PDNSL 380 (400)
T 4gbf_A 376 PDNSL 380 (400)
T ss_dssp TTSTT
T ss_pred CCcce
Confidence 65555
No 18
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.22 E-value=0.016 Score=48.00 Aligned_cols=71 Identities=28% Similarity=0.422 Sum_probs=59.9
Q ss_pred ceEEEEcCCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEecCCCeEEEEECCCCEEEEeC
Q 020659 124 EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGA 203 (323)
Q Consensus 124 ~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~ 203 (323)
.|-.|+-...|..++--+++++.+|.++.||+......- +..++.+|.++++-+..-+.+-.||+
T Consensus 310 ~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~tag---------------Pfla~~AG~~fTVTVn~~nyv~FWGD 374 (400)
T 4gbf_A 310 PIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHAG---------------PYIQLAAGHNFTVTVNTLNQVMFWGD 374 (400)
T ss_dssp CCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGGGC---------------CEEEEEECSSEEEEEETTCCEEEEEC
T ss_pred ccccccccccceEEEecCceeEEeccCCCCceecCCCcc---------------hHHhHhccCCeEEEEeceeeEEEecC
Confidence 678888999999999999999999999999987554333 58999999999999999999999997
Q ss_pred CCCCCc
Q 020659 204 GGSGRL 209 (323)
Q Consensus 204 n~~gql 209 (323)
.-...|
T Consensus 375 SPDNSL 380 (400)
T 4gbf_A 375 SPDNSL 380 (400)
T ss_dssp CTTSTT
T ss_pred CCCcce
Confidence 654333
No 19
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=95.60 E-value=1.1 Score=39.58 Aligned_cols=138 Identities=12% Similarity=0.007 Sum_probs=77.9
Q ss_pred EecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeCc--cceEEEEcCCcEEEEeCCCCccccCCCC
Q 020659 31 ISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGG--AHTLFLTETGCVYATGLNDFGQLGISEN 108 (323)
Q Consensus 31 ~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~~~ 108 (323)
+++...++.|++|-.... + ....+.......|..|+-.. ...++-..+|.|..|-....
T Consensus 106 l~~~~~d~~v~lw~~~~~-~----------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-------- 166 (401)
T 4aez_A 106 VVAVALERNVYVWNADSG-S----------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ-------- 166 (401)
T ss_dssp EEEEEETTEEEEEETTTC-C----------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC--------
T ss_pred EEEEECCCeEEEeeCCCC-c----------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC--------
Confidence 334447888999976531 0 11112221234566666543 34555567899999965321
Q ss_pred CCceecceEecCCCCceEEEEcCCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEecC--C
Q 020659 109 IGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG--F 186 (323)
Q Consensus 109 ~~~~~~p~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g--~ 186 (323)
.....+......|..++...+..+.-..+|.|+.|-..... .....+... ...|..++.. .
T Consensus 167 ----~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~------------~~~~~~~~~-~~~v~~~~~~~~~ 229 (401)
T 4aez_A 167 ----TKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIAN------------HQIGTLQGH-SSEVCGLAWRSDG 229 (401)
T ss_dssp ----CEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSS------------CEEEEEECC-SSCEEEEEECTTS
T ss_pred ----eEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCc------------ceeeEEcCC-CCCeeEEEEcCCC
Confidence 12233333445788888777777777889999999653211 011111111 2246655553 3
Q ss_pred CeEEEEECCCCEEEEeCC
Q 020659 187 EQSVAVTGGGKVLSWGAG 204 (323)
Q Consensus 187 ~~~~~l~~~g~v~~~G~n 204 (323)
.+.+.-+.+|.|..|-..
T Consensus 230 ~~l~s~~~d~~v~iwd~~ 247 (401)
T 4aez_A 230 LQLASGGNDNVVQIWDAR 247 (401)
T ss_dssp SEEEEEETTSCEEEEETT
T ss_pred CEEEEEeCCCeEEEccCC
Confidence 456666788999999643
No 20
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.34 E-value=2.2 Score=41.28 Aligned_cols=64 Identities=17% Similarity=0.130 Sum_probs=33.1
Q ss_pred ccceEEEEc-CCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEE----EcCCCeEEEEEcCCcEEEEeCC
Q 020659 80 GAHTLFLTE-TGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQI----STGYHHSSAITVDGELYMWGKN 150 (323)
Q Consensus 80 ~~~~~~lt~-~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i----~~g~~~~~~lt~~g~v~~~G~n 150 (323)
..|++++.. +|+||.+|-..... ........+.........+ ..-..|++++..+++||.+|-.
T Consensus 441 ~~hs~~~~~~~~~lyv~GG~~~~~-------~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~ 509 (695)
T 2zwa_A 441 MCHTFTTISRNNQLLLIGGRKAPH-------QGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGV 509 (695)
T ss_dssp BSCEEEEETTTTEEEEECCBSSTT-------CBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCB
T ss_pred cceEEEEEccCCEEEEEcCCCCCC-------CccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCC
Confidence 467777776 99999998432111 0000111111111111111 1345677776568999999853
No 21
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=95.32 E-value=1.1 Score=37.56 Aligned_cols=185 Identities=9% Similarity=-0.016 Sum_probs=101.7
Q ss_pred CceEEEEeCccceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEc---CCCeEEEEEcCCcEEEE
Q 020659 71 HSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIST---GYHHSSAITVDGELYMW 147 (323)
Q Consensus 71 ~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~---g~~~~~~lt~~g~v~~~ 147 (323)
..|..++......+.-..+|.|..|-.. .....+......+..+.. .....+....+|.++.|
T Consensus 105 ~~i~~~~~~~~~l~~~~~d~~i~~~d~~--------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~ 170 (313)
T 3odt_A 105 GNVCSLSFQDGVVISGSWDKTAKVWKEG--------------SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLW 170 (313)
T ss_dssp SCEEEEEEETTEEEEEETTSEEEEEETT--------------EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred cCEEEEEecCCEEEEEeCCCCEEEEcCC--------------cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEE
Confidence 4577777766777777889999999410 112222223335555443 45666677889999999
Q ss_pred eCCCCCCCCCCCCCCcccccceEecccCCceEEEEecCC-CeEEEEECCCCEEEEeCCCCCCcCCCCCCCcccccccccc
Q 020659 148 GKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF-EQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSE 226 (323)
Q Consensus 148 G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~-~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~ 226 (323)
-.. .....+.......+..++... ...++...+|.|+.|-.....
T Consensus 171 d~~---------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~------------------- 216 (313)
T 3odt_A 171 QND---------------KVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGD------------------- 216 (313)
T ss_dssp ETT---------------EEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCC-------------------
T ss_pred ecC---------------ceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchh-------------------
Confidence 521 111112221222355444322 235666888999999643210
Q ss_pred ccceeecccCCCcEEEEecCCC-eeEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecCC-CCeeEEEecCC-eeEEE
Q 020659 227 YTPRLIKELEGVKVKIAAAGFL-HSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKL-PYSEEVVCGGY-HTCVL 303 (323)
Q Consensus 227 ~~p~~i~~~~~~~i~~i~~g~~-~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~~-~~i~~v~~G~~-~~~~l 303 (323)
....+. .....|..++...+ ..++...||.|+.|-...... ...+... ..|..++.... ..++-
T Consensus 217 -~~~~~~-~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-----------~~~~~~~~~~i~~~~~~~~~~~~~~ 283 (313)
T 3odt_A 217 -VLRTYE-GHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSL-----------KQVITLPAISIWSVDCMSNGDIIVG 283 (313)
T ss_dssp -EEEEEE-CCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCE-----------EEEEECSSSCEEEEEECTTSCEEEE
T ss_pred -hhhhhh-cCCceEEEEEEecCCCEEEEecCCEEEEEECCCCce-----------eEEEeccCceEEEEEEccCCCEEEE
Confidence 011111 12235666665544 455667889999997544111 1112222 24666765433 45566
Q ss_pred EcCCCEEEeeCCC
Q 020659 304 TSGGELYTWGSNE 316 (323)
Q Consensus 304 ~~~g~v~~~G~n~ 316 (323)
..||.|+.|-.+.
T Consensus 284 ~~dg~i~iw~~~~ 296 (313)
T 3odt_A 284 SSDNLVRIFSQEK 296 (313)
T ss_dssp ETTSCEEEEESCG
T ss_pred eCCCcEEEEeCCC
Confidence 7899999997554
No 22
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=95.16 E-value=1.3 Score=37.49 Aligned_cols=182 Identities=7% Similarity=-0.094 Sum_probs=96.7
Q ss_pred ceEEEEeC--ccceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcC--CCeEEEEEcCCcEEEE
Q 020659 72 SLKALACG--GAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYMW 147 (323)
Q Consensus 72 ~i~~v~~g--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~ 147 (323)
.|..++.. ....+.-..+|.|+.|-.... .....+......|..++.. ....+....+|.|+.|
T Consensus 143 ~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~ 210 (337)
T 1gxr_A 143 ACYALAISPDSKVCFSCCSDGNIAVWDLHNQ------------TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW 210 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTT------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCC------------ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEE
Confidence 46666554 344555667899999965321 1222333334467666654 3455556788999999
Q ss_pred eCCCCCCCCCCCCCCcccccceEecccCCceEEEEec--CCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccc
Q 020659 148 GKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL--GFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTS 225 (323)
Q Consensus 148 G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~--g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~ 225 (323)
-.... ........ ...+..++. .....++-..+|+|+.|-....
T Consensus 211 d~~~~-------------~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~------------------- 256 (337)
T 1gxr_A 211 DLREG-------------RQLQQHDF--TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP------------------- 256 (337)
T ss_dssp ETTTT-------------EEEEEEEC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTSS-------------------
T ss_pred ECCCC-------------ceEeeecC--CCceEEEEECCCCCEEEEEcCCCcEEEEECCCC-------------------
Confidence 65321 01111111 123555544 3445566677888988854321
Q ss_pred cccceeecccCCCcEEEEecCC--CeeEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecCCCCeeEEEecC--CeeE
Q 020659 226 EYTPRLIKELEGVKVKIAAAGF--LHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGG--YHTC 301 (323)
Q Consensus 226 ~~~p~~i~~~~~~~i~~i~~g~--~~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~~~~i~~v~~G~--~~~~ 301 (323)
.+..+.. ....|..++... ...+....+|.|+.|-......+ ........+..++... ...+
T Consensus 257 --~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~-----------~~~~~~~~v~~~~~s~~~~~l~ 322 (337)
T 1gxr_A 257 --DKYQLHL-HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI-----------FQSKESSSVLSCDISVDDKYIV 322 (337)
T ss_dssp --CEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-----------EEEECSSCEEEEEECTTSCEEE
T ss_pred --CeEEEcC-CccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE-----------EEecCCCcEEEEEECCCCCEEE
Confidence 0111111 122466666553 34455567899999976542111 1222333466665543 3444
Q ss_pred EEEcCCCEEEee
Q 020659 302 VLTSGGELYTWG 313 (323)
Q Consensus 302 ~l~~~g~v~~~G 313 (323)
+-..||+|..|-
T Consensus 323 ~~~~dg~i~iw~ 334 (337)
T 1gxr_A 323 TGSGDKKATVYE 334 (337)
T ss_dssp EEETTSCEEEEE
T ss_pred EecCCCeEEEEE
Confidence 556788888873
No 23
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=94.91 E-value=1.6 Score=37.34 Aligned_cols=194 Identities=10% Similarity=0.029 Sum_probs=102.1
Q ss_pred CCceEEEEeCcc-----ceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcCC--CeEEEEEcCC
Q 020659 70 KHSLKALACGGA-----HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY--HHSSAITVDG 142 (323)
Q Consensus 70 ~~~i~~v~~g~~-----~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g~--~~~~~lt~~g 142 (323)
...|..|+.... ..+.-..||.|..|-....+ ......+......|..++... ...+....+|
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~----------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 108 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG----------QTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDK 108 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS----------CEEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC----------ceeEEEeccccCCEEEEEECcCCCEEEEEcCCC
Confidence 346888877754 34445678999999654311 112233333445677766543 3555667899
Q ss_pred cEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEec--CC--CeEEEEECCCCEEEEeCCCCCCcCCCCCCCcc
Q 020659 143 ELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL--GF--EQSVAVTGGGKVLSWGAGGSGRLGHGQESSIL 218 (323)
Q Consensus 143 ~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~--g~--~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~ 218 (323)
.|..|-.... ....... ....|..++. .. .+.+.-..+|.|+.|-.... +
T Consensus 109 ~v~iwd~~~~--------------~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~---------- 162 (368)
T 3mmy_A 109 TAKMWDLSSN--------------QAIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS-N---------- 162 (368)
T ss_dssp EEEEEETTTT--------------EEEEEEE-CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS-S----------
T ss_pred cEEEEEcCCC--------------Cceeecc-ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC-c----------
Confidence 9999965321 1111111 1234666664 33 34555678899999953221 0
Q ss_pred ccccccccccceeecccCCCcEEEEecCCCeeEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecCCCCeeEEEecCC
Q 020659 219 GFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGY 298 (323)
Q Consensus 219 ~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~~~~i~~v~~G~~ 298 (323)
....+.. . ..+..+..-....++.+.++.+..|-.......- ............+..+.....
T Consensus 163 ---------~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 225 (368)
T 3mmy_A 163 ---------PMMVLQL-P-ERCYCADVIYPMAVVATAERGLIVYQLENQPSEF------RRIESPLKHQHRCVAIFKDKQ 225 (368)
T ss_dssp ---------CSEEEEC-S-SCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEE------EECCCSCSSCEEEEEEEECTT
T ss_pred ---------EEEEEec-C-CCceEEEecCCeeEEEeCCCcEEEEEeccccchh------hhccccccCCCceEEEcccCC
Confidence 0111111 1 1455555556677888899999999865421110 000000011112333333333
Q ss_pred e----eEEEEcCCCEEEeeCCC
Q 020659 299 H----TCVLTSGGELYTWGSNE 316 (323)
Q Consensus 299 ~----~~~l~~~g~v~~~G~n~ 316 (323)
. .++-..+|.|..|-.+.
T Consensus 226 ~~~~~~~~~~~dg~i~i~~~~~ 247 (368)
T 3mmy_A 226 NKPTGFALGSIEGRVAIHYINP 247 (368)
T ss_dssp SCEEEEEEEETTSEEEEEESSC
T ss_pred CCCCeEEEecCCCcEEEEecCC
Confidence 2 55566788888886544
No 24
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=94.71 E-value=1.8 Score=37.02 Aligned_cols=247 Identities=9% Similarity=0.063 Sum_probs=116.0
Q ss_pred eEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeCc---cceEEEEcCCcEEEEeCCCCccccC
Q 020659 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGG---AHTLFLTETGCVYATGLNDFGQLGI 105 (323)
Q Consensus 29 ~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g~---~~~~~lt~~g~v~~~G~n~~gqlg~ 105 (323)
.++++-..++.|.+|-.... .....+. .....|..++... ...+.-..||.|+.|-....
T Consensus 86 ~~l~~~~~dg~i~v~d~~~~-----------~~~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----- 148 (366)
T 3k26_A 86 PLLAVAGSRGIIRIINPITM-----------QCIKHYV-GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD----- 148 (366)
T ss_dssp EEEEEEETTCEEEEECTTTC-----------CEEEEEE-SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT-----
T ss_pred CEEEEecCCCEEEEEEchhc-----------eEeeeec-CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC-----
Confidence 35555567788888864421 0111111 1234577776643 44555567899999965321
Q ss_pred CCCCCceecceEe---cCCCCceEEEEcC--CCeEEEEEcCCcEEEEeCCCCCCCC-------CCCCC------Cccccc
Q 020659 106 SENIGYSLEPLRI---SGLKKEVVQISTG--YHHSSAITVDGELYMWGKNSNGQLG-------LGKKA------AKVIPI 167 (323)
Q Consensus 106 ~~~~~~~~~p~~~---~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~n~~gqlg-------~~~~~------~~~~~~ 167 (323)
.....+ ......|..++.. ....+....+|.|+.|-......+. ..+.. ......
T Consensus 149 -------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (366)
T 3k26_A 149 -------TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHF 221 (366)
T ss_dssp -------EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECC
T ss_pred -------eEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeecc
Confidence 112222 2334477777654 3455556778999999654211000 00000 000000
Q ss_pred ceE-ecccCCceEEEEecCCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeeccc--CCCcEEEEe
Q 020659 168 PTK-VECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKEL--EGVKVKIAA 244 (323)
Q Consensus 168 p~~-~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~--~~~~i~~i~ 244 (323)
|.. ........|..++......+....+|.|..|-.....+.-... .........+..+ ....|..++
T Consensus 222 ~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~v~~~~ 292 (366)
T 3k26_A 222 PDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKI---------KPSESNVTILGRFDYSQCDIWYMR 292 (366)
T ss_dssp CSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGC---------CTTCCCEEEEEEEECSSCCSSCCC
T ss_pred CccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCcccccccc---------ccCCcchheeccccccCCcEEEEE
Confidence 000 0000122355555446677777889999999754322110000 0000000111110 111222222
Q ss_pred cC----CCeeEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecCC---CCeeEEEecC--CeeEEEEcCCCEEEeeCC
Q 020659 245 AG----FLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKL---PYSEEVVCGG--YHTCVLTSGGELYTWGSN 315 (323)
Q Consensus 245 ~g----~~~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~~---~~i~~v~~G~--~~~~~l~~~g~v~~~G~n 315 (323)
.. ....++-..||.|+.|-......+ ......+... ..|..++... ...+.-..||.|+.|-.+
T Consensus 293 ~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~-------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 293 FSMDFWQKMLALGNQVGKLYVWDLEVEDPH-------KAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp CEECTTSSEEEEECTTSCEEEEECCSSSGG-------GCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EcCCCCCcEEEEEecCCcEEEEECCCCCCc-------cccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 22 334455567899999986542111 0011123322 3467776653 344555679999999643
No 25
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=94.66 E-value=1.7 Score=36.61 Aligned_cols=191 Identities=9% Similarity=0.015 Sum_probs=94.2
Q ss_pred ecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeCcc-ceEEEEcCCcEEEEeCCCCccccCCCCCC
Q 020659 32 SSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGA-HTLFLTETGCVYATGLNDFGQLGISENIG 110 (323)
Q Consensus 32 ~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g~~-~~~~lt~~g~v~~~G~n~~gqlg~~~~~~ 110 (323)
+..+.++.+++.+......+.... .....+..... ....|..++.... ..++...+|.|..|-......
T Consensus 15 ~~~s~dg~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~-------- 84 (337)
T 1gxr_A 15 FHVTADGQMQPVPFPPDALIGPGI-PRHARQINTLN-HGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGN-------- 84 (337)
T ss_dssp EEECSSSCEEECCCCTTSSSSTTC-CSEEEEEEEEC-CSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTC--------
T ss_pred EEECCCCCEEEeecCCCcEecccc-CCccccceecc-CCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCc--------
Confidence 333488888888876554433322 22222222211 2334666665433 334444588888886543211
Q ss_pred ceecceEec--CCCCceEEEEcCC--CeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEec--
Q 020659 111 YSLEPLRIS--GLKKEVVQISTGY--HHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL-- 184 (323)
Q Consensus 111 ~~~~p~~~~--~~~~~i~~i~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~-- 184 (323)
......+. .....|..++... ...++...+|+|+.|-.... . ......+.. ....|..++.
T Consensus 85 -~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~---------~--~~~~~~~~~-~~~~i~~~~~~~ 151 (337)
T 1gxr_A 85 -KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP---------T--PRIKAELTS-SAPACYALAISP 151 (337)
T ss_dssp -CSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-------------EEEEEEEC-SSSCEEEEEECT
T ss_pred -eeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCC---------C--cceeeeccc-CCCceEEEEECC
Confidence 01111111 2333666665543 34455567899999964321 0 001111111 1223555544
Q ss_pred CCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCCC--eeEEEecCCcEEEE
Q 020659 185 GFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFL--HSACIDENGRVYIF 262 (323)
Q Consensus 185 g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~--~~~~lt~~g~ly~w 262 (323)
...+.+....+|.|+.|-.... .....+.. ....|..++...+ ..+....+|.|+.|
T Consensus 152 ~~~~l~~~~~dg~v~~~d~~~~--------------------~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~~~ 210 (337)
T 1gxr_A 152 DSKVCFSCCSDGNIAVWDLHNQ--------------------TLVRQFQG-HTDGASCIDISNDGTKLWTGGLDNTVRSW 210 (337)
T ss_dssp TSSEEEEEETTSCEEEEETTTT--------------------EEEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCCEEEEEeCCCcEEEEeCCCC--------------------ceeeeeec-ccCceEEEEECCCCCEEEEEecCCcEEEE
Confidence 3446666778899999964321 01111111 1234666655433 44555678899999
Q ss_pred eCCC
Q 020659 263 GDRA 266 (323)
Q Consensus 263 G~n~ 266 (323)
-...
T Consensus 211 d~~~ 214 (337)
T 1gxr_A 211 DLRE 214 (337)
T ss_dssp ETTT
T ss_pred ECCC
Confidence 7544
No 26
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=94.66 E-value=2.3 Score=38.09 Aligned_cols=228 Identities=9% Similarity=0.067 Sum_probs=118.5
Q ss_pred eEEecccCcceEEEeeCCCCCCCCCCCCCC---------eeceeEecc--CCCCceEEEEeCccceEEEEcCCcEEEEeC
Q 020659 29 RWISSTLQRRFAALWGNGDYGRLGLGSLES---------RWRPVVCSA--FEKHSLKALACGGAHTLFLTETGCVYATGL 97 (323)
Q Consensus 29 ~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~---------~~~p~~v~~--~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~ 97 (323)
..+++-..++.|..|-.............. ...|..+.. .....+..++......+.-..||.|..|-.
T Consensus 218 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~ 297 (464)
T 3v7d_B 218 KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDV 297 (464)
T ss_dssp EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEET
T ss_pred CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 456666688899999876543221111000 000101111 122356677766777777788999999965
Q ss_pred CCCccccCCCCCCceecceEecCCCCceEEEEcC--CCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccC
Q 020659 98 NDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLS 175 (323)
Q Consensus 98 n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~ 175 (323)
... .....+......|..++.. ....+.-..+|.|+.|-.... .....+.. .
T Consensus 298 ~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-------------~~~~~~~~-h 351 (464)
T 3v7d_B 298 AQM------------KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG-------------ELMYTLQG-H 351 (464)
T ss_dssp TTT------------EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT-------------EEEEEECC-C
T ss_pred CCC------------cEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-------------cEEEEEeC-C
Confidence 321 1122233333466665553 345566678899999964321 11111221 1
Q ss_pred CceEEEEecCCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCCCeeEEEec
Q 020659 176 GIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDE 255 (323)
Q Consensus 176 ~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~ 255 (323)
...|..++....+.+....||.|..|-..... ............+..+..... .++...
T Consensus 352 ~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~-~l~~~~ 410 (464)
T 3v7d_B 352 TALVGLLRLSDKFLVSAAADGSIRGWDANDYS--------------------RKFSYHHTNLSAITTFYVSDN-ILVSGS 410 (464)
T ss_dssp SSCEEEEEECSSEEEEEETTSEEEEEETTTCC--------------------EEEEEECTTCCCEEEEEECSS-EEEEEE
T ss_pred CCcEEEEEEcCCEEEEEeCCCcEEEEECCCCc--------------------eeeeecCCCCccEEEEEeCCC-EEEEec
Confidence 23577777777888888999999999654311 011111111223444444443 444455
Q ss_pred CCcEEEEeCCCCCcCCcCCCCCcCCCeeecCCCCeeEEEecCCeeEE-EEcCCCEEEe
Q 020659 256 NGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCV-LTSGGELYTW 312 (323)
Q Consensus 256 ~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~~~~i~~v~~G~~~~~~-l~~~g~v~~~ 312 (323)
+|.++.|-......+. .........|..|+.-+...++ ..++|.++.|
T Consensus 411 dg~i~iwd~~~g~~~~---------~~~~~~~~~v~~v~~~~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 411 ENQFNIYNLRSGKLVH---------ANILKDADQIWSVNFKGKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp TTEEEEEETTTCCEEE---------SCTTTTCSEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred CCeEEEEECCCCcEEe---------hhhccCCCcEEEEEecCCEEEEEEEeCCeEEEE
Confidence 8899999755421110 0011122346677665554444 4467766655
No 27
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=94.38 E-value=2.7 Score=37.66 Aligned_cols=232 Identities=8% Similarity=0.007 Sum_probs=119.6
Q ss_pred eEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeCcc-ceEEEEcCCcEEEEeCCCCccccCCC
Q 020659 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGA-HTLFLTETGCVYATGLNDFGQLGISE 107 (323)
Q Consensus 29 ~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g~~-~~~~lt~~g~v~~~G~n~~gqlg~~~ 107 (323)
..+++-..++.|.+|-..+. .....+. .....|..++.... ..+.-..||.|..|-....
T Consensus 133 ~~l~sgs~dg~i~vwd~~~~-----------~~~~~~~-~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~------- 193 (464)
T 3v7d_B 133 NYVITGADDKMIRVYDSINK-----------KFLLQLS-GHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKG------- 193 (464)
T ss_dssp TEEEEEETTSCEEEEETTTT-----------EEEEEEC-CCSSCEEEEEECSTTEEEEEETTSCEEEEETTTT-------
T ss_pred CEEEEEcCCCcEEEEECCCC-----------cEEEEEe-CCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCC-------
Confidence 34555557777888864321 1111111 12235667765533 4555677899999965321
Q ss_pred CCCceecceEecCCCCceEEEEcC----CCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCc---c----cccc--eEeccc
Q 020659 108 NIGYSLEPLRISGLKKEVVQISTG----YHHSSAITVDGELYMWGKNSNGQLGLGKKAAK---V----IPIP--TKVECL 174 (323)
Q Consensus 108 ~~~~~~~p~~~~~~~~~i~~i~~g----~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~---~----~~~p--~~~~~~ 174 (323)
.....+......|..++.. ....+.-..+|.+..|-............... . ...+ ......
T Consensus 194 -----~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
T 3v7d_B 194 -----CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268 (464)
T ss_dssp -----EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred -----cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence 1222333334466655443 24556667899999997654322211100000 0 0000 111111
Q ss_pred CCceEEEEecCCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCC--CeeEE
Q 020659 175 SGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF--LHSAC 252 (323)
Q Consensus 175 ~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~--~~~~~ 252 (323)
....+..++......+.-..+|.|..|-..... ....+.. ....|..++... ...+.
T Consensus 269 ~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~--------------------~~~~~~~-~~~~v~~~~~~~~~~~l~s 327 (464)
T 3v7d_B 269 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK--------------------CLYILSG-HTDRIYSTIYDHERKRCIS 327 (464)
T ss_dssp CSSCEEEEEEETTEEEEEETTSCEEEEETTTTE--------------------EEEEECC-CSSCEEEEEEETTTTEEEE
T ss_pred ccceEEEEcCCCCEEEEEeCCCeEEEEECCCCc--------------------EEEEecC-CCCCEEEEEEcCCCCEEEE
Confidence 123477777777778888899999999643110 0111111 122465555543 34555
Q ss_pred EecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecC-CCCeeEEEecCCeeEEEEcCCCEEEeeCCC
Q 020659 253 IDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK-LPYSEEVVCGGYHTCVLTSGGELYTWGSNE 316 (323)
Q Consensus 253 lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~-~~~i~~v~~G~~~~~~l~~~g~v~~~G~n~ 316 (323)
-..||.|+.|-......+ ..+.. ...|..++..+.+.+.-..||+|..|-.++
T Consensus 328 g~~dg~i~vwd~~~~~~~-----------~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~ 381 (464)
T 3v7d_B 328 ASMDTTIRIWDLENGELM-----------YTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAND 381 (464)
T ss_dssp EETTSCEEEEETTTTEEE-----------EEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred EeCCCcEEEEECCCCcEE-----------EEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCC
Confidence 677899999975431111 11111 123566666666666677788888886554
No 28
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=94.02 E-value=2.6 Score=36.02 Aligned_cols=109 Identities=8% Similarity=-0.005 Sum_probs=62.0
Q ss_pred CceEEEEeCcc------ceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcC---CCeEEEEEcC
Q 020659 71 HSLKALACGGA------HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG---YHHSSAITVD 141 (323)
Q Consensus 71 ~~i~~v~~g~~------~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g---~~~~~~lt~~ 141 (323)
..|..++-... ..+.-..||.|..|-.... .....+......|..++.. ....+.-..+
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~------------~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~d 137 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM------------QCIKHYVGHGNAINELKFHPRDPNLLLSVSKD 137 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC------------CEEEEEESCCSCEEEEEECSSCTTEEEEEETT
T ss_pred CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc------------eEeeeecCCCCcEEEEEECCCCCCEEEEEeCC
Confidence 34666555433 4555677899999954321 1122333344577777664 3455566779
Q ss_pred CcEEEEeCCCCCCCCCCCCCCcccccceEec--ccCCceEEEEecC--CCeEEEEECCCCEEEEeCC
Q 020659 142 GELYMWGKNSNGQLGLGKKAAKVIPIPTKVE--CLSGIFTKQAALG--FEQSVAVTGGGKVLSWGAG 204 (323)
Q Consensus 142 g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~--~~~~~~i~~i~~g--~~~~~~l~~~g~v~~~G~n 204 (323)
|.|+.|-.... .....+. ......|..++.. ..+.+....+|.|..|-..
T Consensus 138 g~i~iwd~~~~-------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 191 (366)
T 3k26_A 138 HALRLWNIQTD-------------TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 191 (366)
T ss_dssp SCEEEEETTTT-------------EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESC
T ss_pred CeEEEEEeecC-------------eEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECC
Confidence 99999965321 1111110 1122346666654 4466666789999999644
No 29
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=92.97 E-value=3.8 Score=34.69 Aligned_cols=238 Identities=10% Similarity=-0.052 Sum_probs=120.4
Q ss_pred eeEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeC--cc-ceEEEEcCCcEEEEeC-CCCccc
Q 020659 28 KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG--GA-HTLFLTETGCVYATGL-NDFGQL 103 (323)
Q Consensus 28 ~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g--~~-~~~~lt~~g~v~~~G~-n~~gql 103 (323)
..++++-..++.|++|-.... .....+..+. .....|..++.. .. ..+.-..+|.|+.|-. ...
T Consensus 23 ~~~l~~~~~d~~v~iw~~~~~--------~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~--- 90 (342)
T 1yfq_A 23 KSLLLITSWDGSLTVYKFDIQ--------AKNVDLLQSL-RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP--- 90 (342)
T ss_dssp GTEEEEEETTSEEEEEEEETT--------TTEEEEEEEE-ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS---
T ss_pred CCEEEEEcCCCeEEEEEeCCC--------Cccccceeee-ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCC---
Confidence 345555568888999876532 1111122221 122346666554 33 5566677899999954 221
Q ss_pred cCCCCCCceecceEecC--CCCceEEEEcC-CCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEE
Q 020659 104 GISENIGYSLEPLRISG--LKKEVVQISTG-YHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTK 180 (323)
Q Consensus 104 g~~~~~~~~~~p~~~~~--~~~~i~~i~~g-~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~ 180 (323)
.+..+.. ....|..++.. ....+....+|.|+.|-......- .......+..... ....|.
T Consensus 91 ----------~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~~-~~~~v~ 154 (342)
T 1yfq_A 91 ----------SFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDG-----VIAVKNLNSNNTK-VKNKIF 154 (342)
T ss_dssp ----------SEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTB-----CEEEEESCSSSSS-SCCCEE
T ss_pred ----------ceEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccc-----cccccCCeeeEEe-eCCceE
Confidence 1233333 34466665543 566666778899999953210000 0000000000000 123577
Q ss_pred EEecCCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCC---CeeEEEecCC
Q 020659 181 QAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF---LHSACIDENG 257 (323)
Q Consensus 181 ~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~---~~~~~lt~~g 257 (323)
.++...+..++.+.+|.|+.|-....+. .............|..++... ...++-..+|
T Consensus 155 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~------------------~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg 216 (342)
T 1yfq_A 155 TMDTNSSRLIVGMNNSQVQWFRLPLCED------------------DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG 216 (342)
T ss_dssp EEEECSSEEEEEESTTEEEEEESSCCTT------------------CCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS
T ss_pred EEEecCCcEEEEeCCCeEEEEECCcccc------------------ccceeeecCCCCceeEEEECCCCCCEEEEEecCC
Confidence 7777777777778899999997543110 011111111222466666553 4455567889
Q ss_pred cEEEEeCCCCCcCCcCCCCCcCCCeeecC----------CCCeeEEEecC--CeeEEEEcCCCEEEeeCCC
Q 020659 258 RVYIFGDRAVDKMLFQEGNHARRPSLISK----------LPYSEEVVCGG--YHTCVLTSGGELYTWGSNE 316 (323)
Q Consensus 258 ~ly~wG~n~~gqlg~~~~~~~~~p~~v~~----------~~~i~~v~~G~--~~~~~l~~~g~v~~~G~n~ 316 (323)
.+..|-....+. .........+.. ...|..++... ...+.-..+|+|+.|-..+
T Consensus 217 ~i~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 282 (342)
T 1yfq_A 217 RVAVEFFDDQGD-----DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT 282 (342)
T ss_dssp EEEEEECCTTCC-----STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred cEEEEEEcCCCc-----ccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCcc
Confidence 999987655310 000001111111 11466665543 3344456788999986553
No 30
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=92.03 E-value=5.6 Score=34.47 Aligned_cols=109 Identities=14% Similarity=0.128 Sum_probs=57.1
Q ss_pred eEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeCc---------cceEEEEcCCcEEEEeCCC
Q 020659 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGG---------AHTLFLTETGCVYATGLND 99 (323)
Q Consensus 29 ~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g~---------~~~~~lt~~g~v~~~G~n~ 99 (323)
.++++-..++.|++|-....-. .........+. .....|..++-.. ...+.-..||.|+.|-...
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~~-----~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~ 100 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLDN-----ENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITR 100 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCTT-----CCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEE
T ss_pred CeEEEEcCCCEEEEEECCCccc-----ccCCCcceEEe-cCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccC
Confidence 5666667899999998764210 01111122222 1223466665543 3444556789999986432
Q ss_pred CccccCCCCCCceecceEecCC-----CCceEEEEcC------CCe-EEEEEcCCcEEEEeCC
Q 020659 100 FGQLGISENIGYSLEPLRISGL-----KKEVVQISTG------YHH-SSAITVDGELYMWGKN 150 (323)
Q Consensus 100 ~gqlg~~~~~~~~~~p~~~~~~-----~~~i~~i~~g------~~~-~~~lt~~g~v~~~G~n 150 (323)
.. .........+... ...|..++.. ... .+....+|.|+.|-..
T Consensus 101 ~~-------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 156 (397)
T 1sq9_A 101 ED-------ETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFH 156 (397)
T ss_dssp CT-------TTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEE
T ss_pred Cc-------ccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCC
Confidence 11 0001112333333 2466666554 344 5555788999999654
No 31
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=91.41 E-value=11 Score=36.48 Aligned_cols=226 Identities=11% Similarity=0.050 Sum_probs=112.7
Q ss_pred ccceeeeEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeC--ccceEEEEcCCcEEEEeCCCC
Q 020659 23 KLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG--GAHTLFLTETGCVYATGLNDF 100 (323)
Q Consensus 23 ~~~~~~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g--~~~~~~lt~~g~v~~~G~n~~ 100 (323)
+......++++-..++.|.+|-.... .....+.. ....|..++-. ....++-..+|.|..|-....
T Consensus 20 ~~sp~~~~la~~~~~g~v~iwd~~~~-----------~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 87 (814)
T 3mkq_A 20 DFHPTEPWVLTTLYSGRVEIWNYETQ-----------VEVRSIQV-TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87 (814)
T ss_dssp EECSSSSEEEEEETTSEEEEEETTTT-----------EEEEEEEC-CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCC-----------ceEEEEec-CCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 33334445555557888888865321 01111111 12335554443 444566677899999965432
Q ss_pred ccccCCCCCCceecceEecCCCCceEEEEcCCC--eEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCce
Q 020659 101 GQLGISENIGYSLEPLRISGLKKEVVQISTGYH--HSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIF 178 (323)
Q Consensus 101 gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g~~--~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~ 178 (323)
. ....+......|..++...+ ..+.-..+|.+..|-.... ......+.. ....
T Consensus 88 ~------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~------------~~~~~~~~~-~~~~ 142 (814)
T 3mkq_A 88 E------------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN------------WALEQTFEG-HEHF 142 (814)
T ss_dssp C------------EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT------------SEEEEEEEC-CSSC
T ss_pred c------------EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC------------ceEEEEEcC-CCCc
Confidence 1 22223333446666665433 4555577899999864210 011111221 1234
Q ss_pred EEEEecCC---CeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEec----CCCeeE
Q 020659 179 TKQAALGF---EQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAA----GFLHSA 251 (323)
Q Consensus 179 i~~i~~g~---~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~----g~~~~~ 251 (323)
|..++... ...+....+|.|..|-..... ....+.......+..++. .....+
T Consensus 143 v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~--------------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 202 (814)
T 3mkq_A 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQST--------------------PNFTLTTGQERGVNYVDYYPLPDKPYMI 202 (814)
T ss_dssp EEEEEEETTEEEEEEEEETTSEEEEEETTCSS--------------------CSEEEECCCTTCCCEEEECCSTTCCEEE
T ss_pred EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--------------------ceeEEecCCCCCEEEEEEEECCCCCEEE
Confidence 66666543 355566888999999642210 111111111112333333 333455
Q ss_pred EEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeec-CCCCeeEEEecCC--eeEEEEcCCCEEEeeCCC
Q 020659 252 CIDENGRVYIFGDRAVDKMLFQEGNHARRPSLIS-KLPYSEEVVCGGY--HTCVLTSGGELYTWGSNE 316 (323)
Q Consensus 252 ~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~-~~~~i~~v~~G~~--~~~~l~~~g~v~~~G~n~ 316 (323)
+-..+|.|..|-..... ....+. ....|..++.... ..+.-..||+|..|-.++
T Consensus 203 ~~~~dg~i~~~d~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 203 TASDDLTIKIWDYQTKS-----------CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (814)
T ss_dssp EECTTSEEEEEETTTTE-----------EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred EEeCCCEEEEEECCCCc-----------EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 55678899999654311 111222 2234666665443 344445688898886554
No 32
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=91.15 E-value=7.4 Score=34.13 Aligned_cols=146 Identities=10% Similarity=-0.053 Sum_probs=83.2
Q ss_pred EEEeCccceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecC-CCCceEEEEcC--CCeEEEEEcCCcEEEEeCCC
Q 020659 75 ALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISG-LKKEVVQISTG--YHHSSAITVDGELYMWGKNS 151 (323)
Q Consensus 75 ~v~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~-~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~n~ 151 (323)
.++-.....++...+|.|+.|-..... ....+.. ....|..++-. ....++-..+|.|..|-...
T Consensus 98 ~~~~s~~~l~~~~~d~~v~lw~~~~~~------------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 165 (401)
T 4aez_A 98 LLDWSNLNVVAVALERNVYVWNADSGS------------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES 165 (401)
T ss_dssp CEEECTTSEEEEEETTEEEEEETTTCC------------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EEeecCCCEEEEECCCeEEEeeCCCCc------------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcC
Confidence 355556778888899999999754311 1111221 23356666553 34555556789999996532
Q ss_pred CCCCCCCCCCCcccccceEecccCCceEEEEecCCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCcccccccccccccee
Q 020659 152 NGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRL 231 (323)
Q Consensus 152 ~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~ 231 (323)
. .....+.. ....|..++......+.-..+|.|+.|-....+. ....
T Consensus 166 ~-------------~~~~~~~~-~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------------------~~~~ 212 (401)
T 4aez_A 166 Q-------------TKLRTMAG-HQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANH-------------------QIGT 212 (401)
T ss_dssp C-------------CEEEEECC-CSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC-------------------EEEE
T ss_pred C-------------eEEEEecC-CCCceEEEEECCCEEEEEcCCCCEEEEecccCcc-------------------eeeE
Confidence 1 11112221 2235777777777777788999999996432110 0111
Q ss_pred ecccCCCcEEEEecCCC--eeEEEecCCcEEEEeCCC
Q 020659 232 IKELEGVKVKIAAAGFL--HSACIDENGRVYIFGDRA 266 (323)
Q Consensus 232 i~~~~~~~i~~i~~g~~--~~~~lt~~g~ly~wG~n~ 266 (323)
+.. ....|..++.... ..+.-..||.|+.|-...
T Consensus 213 ~~~-~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 248 (401)
T 4aez_A 213 LQG-HSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS 248 (401)
T ss_dssp EEC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred EcC-CCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCC
Confidence 111 1235666665433 444456789999997654
No 33
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=90.29 E-value=7.6 Score=32.85 Aligned_cols=194 Identities=12% Similarity=0.029 Sum_probs=100.0
Q ss_pred CceEEEEeCc-----cceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEE--------cCCCeEEE
Q 020659 71 HSLKALACGG-----AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIS--------TGYHHSSA 137 (323)
Q Consensus 71 ~~i~~v~~g~-----~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~--------~g~~~~~~ 137 (323)
..|..++... ...+.-..+|.|..|-..... .....+......|..+. ......+.
T Consensus 66 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~ 134 (357)
T 3i2n_A 66 KPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE-----------MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVT 134 (357)
T ss_dssp SCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS-----------SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEE
T ss_pred CcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC-----------ccEEEEEecccceEEEeeccccccCCCccEEEE
Confidence 3577776654 344555678999999654321 01223333444666663 23345556
Q ss_pred EEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccC---CceEEEEe------cCCCeEEEEECCCCEEEEeCCCCCC
Q 020659 138 ITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLS---GIFTKQAA------LGFEQSVAVTGGGKVLSWGAGGSGR 208 (323)
Q Consensus 138 lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~---~~~i~~i~------~g~~~~~~l~~~g~v~~~G~n~~gq 208 (323)
-..+|.|..|-..... .....+.... ...+..+. ....+.+.-..+|.|+.|-....
T Consensus 135 ~~~d~~i~vwd~~~~~------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-- 200 (357)
T 3i2n_A 135 GSRDGTVKVWDPRQKD------------DPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM-- 200 (357)
T ss_dssp EETTSCEEEECTTSCS------------SCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT--
T ss_pred EeCCCeEEEEeCCCCC------------CcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC--
Confidence 6788999999653211 0111111111 22465555 34455666678899999964321
Q ss_pred cCCCCCCCccccccccccccceeecccCCCcEEEEecCC-----CeeEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCee
Q 020659 209 LGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF-----LHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSL 283 (323)
Q Consensus 209 lG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~-----~~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~ 283 (323)
.+...... ...|..++... ...++-..+|.|+.|-......+ .......
T Consensus 201 -------------------~~~~~~~~-~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~ 254 (357)
T 3i2n_A 201 -------------------ALRWETNI-KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT------KGFASVS 254 (357)
T ss_dssp -------------------EEEEEEEC-SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT------TEEEEEE
T ss_pred -------------------ceeeecCC-CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc------cceeeec
Confidence 11111111 22566666543 44555577899999875431111 0000001
Q ss_pred e-cCCCCeeEEEecCCe---eEEEEcCCCEEEeeCC
Q 020659 284 I-SKLPYSEEVVCGGYH---TCVLTSGGELYTWGSN 315 (323)
Q Consensus 284 v-~~~~~i~~v~~G~~~---~~~l~~~g~v~~~G~n 315 (323)
. .....|..++..... .+.-..||.|..|-.+
T Consensus 255 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 290 (357)
T 3i2n_A 255 EKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYE 290 (357)
T ss_dssp EECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEE
T ss_pred cCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecC
Confidence 1 223357777765543 3334578999888644
No 34
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=90.19 E-value=8 Score=32.97 Aligned_cols=230 Identities=10% Similarity=0.013 Sum_probs=116.4
Q ss_pred eeEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeC----ccceEEEEcCCcEEEEeCCCCccc
Q 020659 28 KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG----GAHTLFLTETGCVYATGLNDFGQL 103 (323)
Q Consensus 28 ~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g----~~~~~~lt~~g~v~~~G~n~~gql 103 (323)
...+++-..++.|++|-... ........+.. ....|..++-. ....+.-..||.|..|-....
T Consensus 23 ~~~l~~~~~dg~i~iw~~~~---------~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~--- 89 (379)
T 3jrp_A 23 GKRLATCSSDKTIKIFEVEG---------ETHKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG--- 89 (379)
T ss_dssp SSEEEEEETTSCEEEEEEET---------TEEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETT---
T ss_pred CCEEEEEECCCcEEEEecCC---------CcceeeeEecC-CCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCC---
Confidence 34455555677788886531 01111111111 22357777754 445566677899999964321
Q ss_pred cCCCCCCceecceEecCCCCceEEEEcCC----CeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceE
Q 020659 104 GISENIGYSLEPLRISGLKKEVVQISTGY----HHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFT 179 (323)
Q Consensus 104 g~~~~~~~~~~p~~~~~~~~~i~~i~~g~----~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i 179 (323)
.......+......|..++... ...+....+|.|..|-...... ..+..+.. ....|
T Consensus 90 -------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-----------~~~~~~~~-~~~~v 150 (379)
T 3jrp_A 90 -------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT-----------TSPIIIDA-HAIGV 150 (379)
T ss_dssp -------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC-----------CCEEEEEC-CTTCE
T ss_pred -------ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc-----------eeeEEecC-CCCce
Confidence 1112222333344677776654 3566668899999996542210 11111111 12245
Q ss_pred EEEecC---------------CCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccc-eeecccCCCcEEEE
Q 020659 180 KQAALG---------------FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTP-RLIKELEGVKVKIA 243 (323)
Q Consensus 180 ~~i~~g---------------~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p-~~i~~~~~~~i~~i 243 (323)
..++.. ....+.-..+|.|+.|-.... .....+ ..+. .....|..+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----------------~~~~~~~~~~~-~h~~~v~~~ 212 (379)
T 3jrp_A 151 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD-----------------AQTYVLESTLE-GHSDWVRDV 212 (379)
T ss_dssp EEEEECCCC----------CTTCEEEEEETTSCEEEEEEETT-----------------TTEEEEEEEEC-CCSSCEEEE
T ss_pred EEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCC-----------------CcceeeEEEEe-cccCcEeEE
Confidence 555544 345666688999999953211 000011 1111 112357777
Q ss_pred ecCCC-----eeEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeec---CCCCeeEEEecCC--eeEEEEcCCCEEEee
Q 020659 244 AAGFL-----HSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLIS---KLPYSEEVVCGGY--HTCVLTSGGELYTWG 313 (323)
Q Consensus 244 ~~g~~-----~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~---~~~~i~~v~~G~~--~~~~l~~~g~v~~~G 313 (323)
+.... ..+....||.|..|-....... .....+. ....+..++.... ..++-..||.|+.|-
T Consensus 213 ~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~--------~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~ 284 (379)
T 3jrp_A 213 AWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP--------WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 284 (379)
T ss_dssp EECCCCSSSEEEEEEETTSCEEEEEESSTTSC--------CEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred EECCCCCCCCeEEEEeCCCEEEEEeCCCCCcc--------ceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence 76544 4455567899999975542100 0001111 1223566665433 344456789999886
Q ss_pred CC
Q 020659 314 SN 315 (323)
Q Consensus 314 ~n 315 (323)
.+
T Consensus 285 ~~ 286 (379)
T 3jrp_A 285 EN 286 (379)
T ss_dssp EE
T ss_pred CC
Confidence 54
No 35
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=90.15 E-value=14 Score=35.63 Aligned_cols=62 Identities=15% Similarity=0.092 Sum_probs=32.5
Q ss_pred CCeEEEEEc-CCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEe----cCCCeEEEEECCCCEEEEe
Q 020659 132 YHHSSAITV-DGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAA----LGFEQSVAVTGGGKVLSWG 202 (323)
Q Consensus 132 ~~~~~~lt~-~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~----~g~~~~~~l~~~g~v~~~G 202 (323)
..|++++.. +|+||.+|-.....- ...+ -... .....+...+. .-..|++++..+++||++|
T Consensus 441 ~~hs~~~~~~~~~lyv~GG~~~~~~---~~~d-----v~~y-d~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~G 507 (695)
T 2zwa_A 441 MCHTFTTISRNNQLLLIGGRKAPHQ---GLSD-----NWIF-DMKTREWSMIKSLSHTRFRHSACSLPDGNVLILG 507 (695)
T ss_dssp BSCEEEEETTTTEEEEECCBSSTTC---BCCC-----CEEE-ETTTTEEEECCCCSBCCBSCEEEECTTSCEEEEC
T ss_pred cceEEEEEccCCEEEEEcCCCCCCC---cccc-----EEEE-eCCCCcEEECCCCCCCcccceEEEEcCCEEEEEC
Confidence 467777776 899999985321110 0000 0011 11111222221 2345777776689999998
No 36
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=90.12 E-value=7.1 Score=32.27 Aligned_cols=220 Identities=10% Similarity=0.076 Sum_probs=113.3
Q ss_pred eeeEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeC--ccceEEEEcCCcEEEEeCCCCcccc
Q 020659 27 CKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG--GAHTLFLTETGCVYATGLNDFGQLG 104 (323)
Q Consensus 27 ~~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g--~~~~~~lt~~g~v~~~G~n~~gqlg 104 (323)
....+++-..++.|++|-.... ..+..+.. ....|..++.. ....+.-..+|.+..|-.....
T Consensus 28 ~~~~l~s~~~dg~v~vw~~~~~-----------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~--- 92 (313)
T 3odt_A 28 DDSKVASVSRDGTVRLWSKDDQ-----------WLGTVVYT-GQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATS--- 92 (313)
T ss_dssp ETTEEEEEETTSEEEEEEESSS-----------EEEEEEEE-CSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCT---
T ss_pred CCCEEEEEEcCCcEEEEECCCC-----------EEEEEeec-CCccEEEEEECCCCCEEEEecCCCeEEEEEeeecC---
Confidence 3445566668888999875321 11111111 12345555443 4445555678888877543211
Q ss_pred CCCCCCceecceEecCCCCceEEEEcCCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEec
Q 020659 105 ISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL 184 (323)
Q Consensus 105 ~~~~~~~~~~p~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~ 184 (323)
.......+......|..++......+....+|.+..|-.. .. ...+.. ....+..+..
T Consensus 93 ------~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~--------------~~-~~~~~~-~~~~v~~~~~ 150 (313)
T 3odt_A 93 ------GEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEG--------------SL-VYNLQA-HNASVWDAKV 150 (313)
T ss_dssp ------TSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETT--------------EE-EEEEEC-CSSCEEEEEE
T ss_pred ------CCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCC--------------cE-EEeccc-CCCceeEEEE
Confidence 0111222333444788887777777777889999999410 11 111111 1223544443
Q ss_pred ---CCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCCC-eeEEEecCCcEE
Q 020659 185 ---GFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFL-HSACIDENGRVY 260 (323)
Q Consensus 185 ---g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~-~~~~lt~~g~ly 260 (323)
.....+....+|.|..|-... ....+.......|..++.... ..++-..+|.|+
T Consensus 151 ~~~~~~~l~~~~~d~~i~i~d~~~----------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~ 208 (313)
T 3odt_A 151 VSFSENKFLTASADKTIKLWQNDK----------------------VIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIK 208 (313)
T ss_dssp EETTTTEEEEEETTSCEEEEETTE----------------------EEEEECSSCSSCEEEEEEEETTEEEEEETTSEEE
T ss_pred ccCCCCEEEEEECCCCEEEEecCc----------------------eEEEEeccCcccEEEEEEcCCCeEEEccCCCeEE
Confidence 556777778899999994110 011111112224554444322 255567888999
Q ss_pred EEeCCCCCcCCcCCCCCcCCCeeec-CCCCeeEEEecCC-eeEEEEcCCCEEEeeCCC
Q 020659 261 IFGDRAVDKMLFQEGNHARRPSLIS-KLPYSEEVVCGGY-HTCVLTSGGELYTWGSNE 316 (323)
Q Consensus 261 ~wG~n~~gqlg~~~~~~~~~p~~v~-~~~~i~~v~~G~~-~~~~l~~~g~v~~~G~n~ 316 (323)
.|-......+ ..+. ....|..++.... ..++-..||+|+.|-..+
T Consensus 209 i~d~~~~~~~-----------~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~ 255 (313)
T 3odt_A 209 LVDMHTGDVL-----------RTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKEN 255 (313)
T ss_dssp EEETTTCCEE-----------EEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTT
T ss_pred EEECCchhhh-----------hhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCC
Confidence 9976542111 1111 1223556655433 444455678888876443
No 37
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=89.94 E-value=15 Score=35.63 Aligned_cols=235 Identities=9% Similarity=-0.034 Sum_probs=118.0
Q ss_pred eeEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeC----ccceEEEEcCCcEEEEeCCCCccc
Q 020659 28 KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG----GAHTLFLTETGCVYATGLNDFGQL 103 (323)
Q Consensus 28 ~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g----~~~~~~lt~~g~v~~~G~n~~gql 103 (323)
...+++-..++.|.+|-.... .......+.. ....|..++.. ....+.-..||.|+.|-....
T Consensus 21 g~~latg~~dg~I~vwd~~~~---------~~~~~~~l~~-h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~--- 87 (753)
T 3jro_A 21 GKRLATCSSDKTIKIFEVEGE---------THKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG--- 87 (753)
T ss_dssp SCCEEEEETTTEEEEEEEETT---------EEEEEEEECC-CSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT---
T ss_pred CCeEEEEECCCcEEEEecCCC---------CCccceeccC-CcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC---
Confidence 345555567888888864310 1111111111 12357777764 345666678999999964321
Q ss_pred cCCCCCCceecceEecCCCCceEEEEcCC----CeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceE
Q 020659 104 GISENIGYSLEPLRISGLKKEVVQISTGY----HHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFT 179 (323)
Q Consensus 104 g~~~~~~~~~~p~~~~~~~~~i~~i~~g~----~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i 179 (323)
.......+......|..++... ...+..+.+|.|..|-...... ..+..+... ...|
T Consensus 88 -------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~-----------~~~~~~~~~-~~~v 148 (753)
T 3jro_A 88 -------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT-----------TSPIIIDAH-AIGV 148 (753)
T ss_dssp -------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC-----------CCCEEEECC-SSCE
T ss_pred -------cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC-----------cceeEeecC-CCce
Confidence 1112233333344777776653 4566678899999997542210 111111111 2235
Q ss_pred EEEecC---------------CCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEe
Q 020659 180 KQAALG---------------FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAA 244 (323)
Q Consensus 180 ~~i~~g---------------~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~ 244 (323)
..++.. ....+.-..+|.|..|-..... ....+..........|..++
T Consensus 149 ~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~-----------------~~~~~~~~~~~h~~~V~~l~ 211 (753)
T 3jro_A 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA-----------------QTYVLESTLEGHSDWVRDVA 211 (753)
T ss_dssp EEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT-----------------TEEEEEEEECCCSSCEEEEE
T ss_pred EEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc-----------------ccceeeeeecCCCCcEEEEE
Confidence 555543 3456666889999999532210 00011111111223577777
Q ss_pred cCCC-----eeEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecCCCCeeEEEecC--CeeEEEEcCCCEEEeeCCC
Q 020659 245 AGFL-----HSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGG--YHTCVLTSGGELYTWGSNE 316 (323)
Q Consensus 245 ~g~~-----~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~~~~i~~v~~G~--~~~~~l~~~g~v~~~G~n~ 316 (323)
.... ..+.-..||.|+.|-.......- . ............|..++... ...+.-..||.|+.|-.+.
T Consensus 212 ~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~----~-~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 212 WSPTVLLRSYLASVSQDRTCIIWTQDNEQGPW----K-KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp ECCCCSSSEEEEEEESSSCEEEEEESSSSSCC----B-CCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred eccCCCCCCEEEEEecCCEEEEecCCCCCCcc----e-eEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 6644 44555678999999765421000 0 00000001112344555432 3344445799999997664
No 38
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=89.80 E-value=10 Score=33.64 Aligned_cols=248 Identities=9% Similarity=0.019 Sum_probs=117.3
Q ss_pred eeEEecccCcceEEEeeCCCCCCCCCCCCCCeecee-EeccCCCCceEEEEeCcc---ceEEEEcCCcEEEEeCCCCccc
Q 020659 28 KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPV-VCSAFEKHSLKALACGGA---HTLFLTETGCVYATGLNDFGQL 103 (323)
Q Consensus 28 ~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~-~v~~~~~~~i~~v~~g~~---~~~~lt~~g~v~~~G~n~~gql 103 (323)
..++++-..++.|++|-.......-.. .....|. .+.. ....|..++-... ..+.-..+|.|..|-.+.....
T Consensus 141 ~~~lat~~~dg~V~vwd~~~~~~~~~~--~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 217 (430)
T 2xyi_A 141 ACVIATKTPSSDVLVFDYTKHPSKPEP--SGECQPDLRLRG-HQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKE 217 (430)
T ss_dssp EEEEEEECSSSCEEEEEGGGSCSSCCT--TCCCCCSEEEEC-CSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBG
T ss_pred CcEEEEECCCCcEEEEECCCcccccCc--cccCCCcEEecC-CCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCC
Confidence 345666667888999987653111100 0001111 1111 1123444443322 4444556899999977542211
Q ss_pred cCCCCCCceecceEecCCCCceEEEEcC---CCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEE
Q 020659 104 GISENIGYSLEPLRISGLKKEVVQISTG---YHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTK 180 (323)
Q Consensus 104 g~~~~~~~~~~p~~~~~~~~~i~~i~~g---~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~ 180 (323)
. ........+......|..++.. ....+....+|.|+.|-...... ......+.. ....|.
T Consensus 218 ~-----~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~----------~~~~~~~~~-~~~~v~ 281 (430)
T 2xyi_A 218 H-----RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT----------SKPSHTVDA-HTAEVN 281 (430)
T ss_dssp G-----GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS----------SSCSEEEEC-CSSCEE
T ss_pred C-----ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC----------CcceeEeec-CCCCeE
Confidence 0 0111122333334467777653 34455567899999997643210 001111111 122466
Q ss_pred EEecCC--C-eEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCCCe---eEEEe
Q 020659 181 QAALGF--E-QSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLH---SACID 254 (323)
Q Consensus 181 ~i~~g~--~-~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~---~~~lt 254 (323)
.++... . ..+.-..+|.|..|-....++ |..........|..++..... .+.-.
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~--------------------~~~~~~~h~~~v~~i~~sp~~~~~l~s~~ 341 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLKL--------------------KLHSFESHKDEIFQVQWSPHNETILASSG 341 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTTS--------------------CSEEEECCSSCEEEEEECSSCTTEEEEEE
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC--------------------CeEEeecCCCCEEEEEECCCCCCEEEEEe
Confidence 665543 2 344557789999997543211 111111112356667665433 44455
Q ss_pred cCCcEEEEeCCCCCcCCcCCCCCcCCCeeec---C-CCCeeEEEecCC---eeEEEEcCCCEEEeeC
Q 020659 255 ENGRVYIFGDRAVDKMLFQEGNHARRPSLIS---K-LPYSEEVVCGGY---HTCVLTSGGELYTWGS 314 (323)
Q Consensus 255 ~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~---~-~~~i~~v~~G~~---~~~~l~~~g~v~~~G~ 314 (323)
.||.|..|-....+............|..+. . ...|..++.... ..+....||.|..|-.
T Consensus 342 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~ 408 (430)
T 2xyi_A 342 TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408 (430)
T ss_dssp TTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred CCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEc
Confidence 7899999976552211100000000111111 1 123666665443 3444567888888854
No 39
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=89.68 E-value=9.5 Score=33.05 Aligned_cols=214 Identities=10% Similarity=-0.051 Sum_probs=111.3
Q ss_pred EEeCccceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecC-CCCceEEEEcCC-----CeEEEEEcCCcEEEEeC
Q 020659 76 LACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISG-LKKEVVQISTGY-----HHSSAITVDGELYMWGK 149 (323)
Q Consensus 76 v~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~-~~~~i~~i~~g~-----~~~~~lt~~g~v~~~G~ 149 (323)
.+......+++|+.|++|..-..+-...+...... +-...++. ..++|+.+.+.. ...+++|++|.+-..-.
T Consensus 49 ~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~--~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l 126 (327)
T 3uc1_A 49 VCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQ--HVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKL 126 (327)
T ss_dssp EEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCE--EHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEG
T ss_pred EeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCE--EHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEH
Confidence 34566678889999999988654433222111111 00011111 234788776543 46788999998887765
Q ss_pred CCCCCCCCCCCCCcccccceEecccCCceEEE--EecCCCeEEEEECCCCEEEEeCC--CCCCcCCCCCCCccccccccc
Q 020659 150 NSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQ--AALGFEQSVAVTGGGKVLSWGAG--GSGRLGHGQESSILGFLRSTS 225 (323)
Q Consensus 150 n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~--i~~g~~~~~~l~~~g~v~~~G~n--~~gqlG~~~~~~~~~~~~~~~ 225 (323)
.++..-. + .-...+...++..++. ++.+.++.+++|++|++|-+-.. .--.+|+....
T Consensus 127 ~~~~~~~------r--~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~G---------- 188 (327)
T 3uc1_A 127 TDFDSNR------S--GGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSG---------- 188 (327)
T ss_dssp GGGCCCC------S--SCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBC----------
T ss_pred HHhhccc------c--CceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCC----------
Confidence 4332110 0 0000111112233443 34466789999999999999766 44444443321
Q ss_pred cccceeecccCCCcEEEEecCC--CeeEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecC-CCCeeEE--EecCCee
Q 020659 226 EYTPRLIKELEGVKVKIAAAGF--LHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK-LPYSEEV--VCGGYHT 300 (323)
Q Consensus 226 ~~~p~~i~~~~~~~i~~i~~g~--~~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~-~~~i~~v--~~G~~~~ 300 (323)
. ..++..++++|+.+..-. ...+++|+.|.+.-.-..++-..+.+...... ..+.. .+.++.+ ..+....
T Consensus 189 --v-~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~--~~l~~~~d~lv~~~~~~~~~~i 263 (327)
T 3uc1_A 189 --V-QGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLT--VMYDRRRGRLVGALIVDDDSEL 263 (327)
T ss_dssp --E-ESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEES--SCCCTTTCSEEEEEEECTTCEE
T ss_pred --e-eeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEE--EEecCCCCeEEEEEEeCCCccE
Confidence 0 122333455677776543 35677788887665433322211111000000 01111 1223332 3466788
Q ss_pred EEEEcCCCEEEeeC
Q 020659 301 CVLTSGGELYTWGS 314 (323)
Q Consensus 301 ~~l~~~g~v~~~G~ 314 (323)
++++++|.+..+-.
T Consensus 264 ~l~T~~G~~ir~~~ 277 (327)
T 3uc1_A 264 YAVTSGGGVIRTAA 277 (327)
T ss_dssp EEEEGGGCEEEEEG
T ss_pred EEEcCCCeEEEEeh
Confidence 99999999887743
No 40
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=89.65 E-value=20 Score=36.71 Aligned_cols=223 Identities=10% Similarity=0.047 Sum_probs=106.8
Q ss_pred eeEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeC-ccceEEEEcCCcEEEEeCCCCccccCC
Q 020659 28 KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG-GAHTLFLTETGCVYATGLNDFGQLGIS 106 (323)
Q Consensus 28 ~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g-~~~~~~lt~~g~v~~~G~n~~gqlg~~ 106 (323)
..++++...++.|..|-....-.+ .+. .....|..++.. ....+....+|.|+.|-....-
T Consensus 1015 g~~l~s~~~dg~i~vwd~~~~~~~------------~~~-~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~----- 1076 (1249)
T 3sfz_A 1015 GKTLISSSEDSVIQVWNWQTGDYV------------FLQ-AHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGR----- 1076 (1249)
T ss_dssp SSCEEEECSSSBEEEEETTTTEEE------------CCB-CCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTC-----
T ss_pred CCEEEEEcCCCEEEEEECCCCceE------------EEe-cCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCc-----
Confidence 344555557788888865531111 011 112335555443 3345566778899999653321
Q ss_pred CCCCceecceEecCCCCceEEEEc--CCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEec
Q 020659 107 ENIGYSLEPLRISGLKKEVVQIST--GYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL 184 (323)
Q Consensus 107 ~~~~~~~~p~~~~~~~~~i~~i~~--g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~ 184 (323)
....+......|..++. -....+....+|.|+.|-......+. .+... ...|..++.
T Consensus 1077 -------~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~-------------~l~~h-~~~v~~~~~ 1135 (1249)
T 3sfz_A 1077 -------IERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLH-------------ELKGH-NGCVRCSAF 1135 (1249)
T ss_dssp -------CCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSB-------------CCCCC-SSCEEEEEE
T ss_pred -------eeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceee-------------eeccC-CCcEEEEEE
Confidence 11222222233433333 33345555678888888543211110 11111 123555544
Q ss_pred CC--CeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeec---ccCCCcEEEEecCCCeeEEEecCCcE
Q 020659 185 GF--EQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIK---ELEGVKVKIAAAGFLHSACIDENGRV 259 (323)
Q Consensus 185 g~--~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~---~~~~~~i~~i~~g~~~~~~lt~~g~l 259 (323)
.. ...+.-+.+|.|+.|-......+.. ..|.... ......|..++...+...+++.+|.|
T Consensus 1136 s~dg~~lat~~~dg~i~vwd~~~~~~~~~---------------~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~g~v 1200 (1249)
T 3sfz_A 1136 SLDGILLATGDDNGEIRIWNVSDGQLLHS---------------CAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYL 1200 (1249)
T ss_dssp CSSSSEEEEEETTSCCCEEESSSSCCCCC---------------CCCCC-------CCSCCCEEEECTTSSCEEEESSSE
T ss_pred CCCCCEEEEEeCCCEEEEEECCCCceEEE---------------eccccccccccccCceEEEEEECCCCCEEEECCCeE
Confidence 33 3455557888899986443211110 0111110 11122466666666655556666888
Q ss_pred EEEeCCCCCcCCcCCCCCcCCCeeecCCCCeeEEEe--cCCeeEEEEcCCCEEEeeC
Q 020659 260 YIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVC--GGYHTCVLTSGGELYTWGS 314 (323)
Q Consensus 260 y~wG~n~~gqlg~~~~~~~~~p~~v~~~~~i~~v~~--G~~~~~~l~~~g~v~~~G~ 314 (323)
..|-......+..- ......+..++. .....+....+|.|+.|--
T Consensus 1201 ~vwd~~~g~~~~~~----------~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1201 KWWNVATGDSSQTF----------YTNGTNLKKIHVSPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp EEBCSSSCBCCCCC----------CCSSCCCCCCEECSSSCCEEEECTTCCEEEECC
T ss_pred EEEECCCCceeeee----------eccCCcccEEEECCCCCEEEEecCCcEEEEEee
Confidence 88875442221100 001112333333 3445566778999999854
No 41
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=89.40 E-value=8.9 Score=32.31 Aligned_cols=205 Identities=12% Similarity=-0.044 Sum_probs=111.0
Q ss_pred CceEEEEe--CccceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEc---CCCeEEEEEcCCcEE
Q 020659 71 HSLKALAC--GGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIST---GYHHSSAITVDGELY 145 (323)
Q Consensus 71 ~~i~~v~~--g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~---g~~~~~~lt~~g~v~ 145 (323)
..+..+.. ...+.+++|++|++|.--..+... . . ..-. +. ..++|+.+.+ .....+++|++|.+.
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~---~---~--~~~l-l~-~~e~i~~v~~~~~~~~~~v~~T~~G~iK 93 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQ---G---S--KVSL-KS-REEKIVGAFIREKFGNRLLLATKKGYVK 93 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHT---S---E--ECCC-SS-TTCCEEEEEEGGGSCSEEEEEETTSEEE
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCcc---C---c--cccc-CC-CCCEEEEEECCcCCCCEEEEEeCCCEEE
Confidence 34544433 345688999999999754322110 0 0 0001 22 2447888765 125688899999998
Q ss_pred EEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEec--CCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccc
Q 020659 146 MWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL--GFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRS 223 (323)
Q Consensus 146 ~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~--g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~ 223 (323)
..-..++.+- . .-...+...++..++.+.. +..+.+++|++|++|.+-....-.+|+....
T Consensus 94 r~~l~~~~~~---~------~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~G-------- 156 (276)
T 3no0_A 94 KIPLAEFEYK---A------QGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARG-------- 156 (276)
T ss_dssp EEEGGGTTTC---S------TTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCC--------
T ss_pred EEEHHHhhhh---c------CCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCC--------
Confidence 8875544310 0 0011111222334555433 4557899999999999976665555543321
Q ss_pred cccccceeecccCCCcEEEEecC--CCeeEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecCCCCeeEE--EecCCe
Q 020659 224 TSEYTPRLIKELEGVKVKIAAAG--FLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEV--VCGGYH 299 (323)
Q Consensus 224 ~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~~~~i~~v--~~G~~~ 299 (323)
.+ .++..++++|+.+... ....+++|++|...-.-..++-..+.+...... +...+.++.+ ..+...
T Consensus 157 ----v~-~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~----i~~~~~lv~~~~~~~~~~ 227 (276)
T 3no0_A 157 ----VQ-GIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEV----SGTKDTLVDLIPIKEEVE 227 (276)
T ss_dssp ----EE-CCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEEC----CCSSSCEEEEEEESSEEE
T ss_pred ----EE-EEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEE----EcCCCcEEEEEEeCCCCE
Confidence 00 1222234566665543 346778889988777654443322221110000 1112233333 235678
Q ss_pred eEEEEcCCCEEE
Q 020659 300 TCVLTSGGELYT 311 (323)
Q Consensus 300 ~~~l~~~g~v~~ 311 (323)
.++++++|++..
T Consensus 228 i~~~t~~G~~ir 239 (276)
T 3no0_A 228 LLITTKNGKAFY 239 (276)
T ss_dssp EEEEETTSCEEE
T ss_pred EEEEcCCCeEEE
Confidence 889999999988
No 42
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=87.85 E-value=13 Score=32.15 Aligned_cols=197 Identities=10% Similarity=0.011 Sum_probs=93.9
Q ss_pred eEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCC----CCceEEEEeC------ccc-eEEEEcCCcEEEEeC
Q 020659 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFE----KHSLKALACG------GAH-TLFLTETGCVYATGL 97 (323)
Q Consensus 29 ~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~----~~~i~~v~~g------~~~-~~~lt~~g~v~~~G~ 97 (323)
.++++-..++.|++|-....-. ........+.... ...|..++.. ... .+.-..+|.|+.|-.
T Consensus 82 ~~l~s~~~dg~i~iw~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 155 (397)
T 1sq9_A 82 CLVATTSFSGDLLFYRITREDE------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF 155 (397)
T ss_dssp EEEEEEETTSCEEEEEEEECTT------TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEE
T ss_pred cEEEEEcCCCCEEEEEccCCcc------cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeC
Confidence 4555556778888886543211 0111122233221 2456666655 344 455568899999965
Q ss_pred CCCccccCCCCCCceecce-Ee-------cCCCCceEEEEcCCC-eEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccc
Q 020659 98 NDFGQLGISENIGYSLEPL-RI-------SGLKKEVVQISTGYH-HSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIP 168 (323)
Q Consensus 98 n~~gqlg~~~~~~~~~~p~-~~-------~~~~~~i~~i~~g~~-~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p 168 (323)
.....-....... ..|. .+ ......|..++...+ ..+.-..+|.|+.|-.... ...
T Consensus 156 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~-------------~~~ 220 (397)
T 1sq9_A 156 HPFADESNSLTLN--WSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTL-------------RPL 220 (397)
T ss_dssp ESSSSHHHHTTTC--CCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTT-------------EEE
T ss_pred Cccccccccceee--ccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCC-------------cee
Confidence 4300000000000 1111 22 112335555555433 4444466889999965321 111
Q ss_pred eEecc---c--CCceEEEEecC--CCeEEEEECC---CCEEEEeCCCCCCcCCCCCCCccccccccccccceeecc----
Q 020659 169 TKVEC---L--SGIFTKQAALG--FEQSVAVTGG---GKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKE---- 234 (323)
Q Consensus 169 ~~~~~---~--~~~~i~~i~~g--~~~~~~l~~~---g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~---- 234 (323)
..+.. . ....|..++.. ..+.++-..+ |.|+.|-...... ...+..
T Consensus 221 ~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~--------------------~~~~~~~~~~ 280 (397)
T 1sq9_A 221 YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER--------------------IGSLSVPTHS 280 (397)
T ss_dssp EEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE--------------------EEEECBC---
T ss_pred EEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc--------------------cceeccCccc
Confidence 11221 1 02346666553 3455555667 8899886432110 011111
Q ss_pred --------cCCCcEEEEecCC--CeeEEEecCCcEEEEeCCC
Q 020659 235 --------LEGVKVKIAAAGF--LHSACIDENGRVYIFGDRA 266 (323)
Q Consensus 235 --------~~~~~i~~i~~g~--~~~~~lt~~g~ly~wG~n~ 266 (323)
.....|..++... ...+.-..||.|+.|-...
T Consensus 281 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 322 (397)
T 1sq9_A 281 SQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 322 (397)
T ss_dssp -----CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred ccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 0223566666653 3445556789999997654
No 43
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=87.72 E-value=19 Score=34.17 Aligned_cols=71 Identities=17% Similarity=0.291 Sum_probs=36.5
Q ss_pred CCeeEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecCCC-CeeEEE----ecCCeeE-EEEcCCCEEEeeCCCCC
Q 020659 247 FLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLP-YSEEVV----CGGYHTC-VLTSGGELYTWGSNENG 318 (323)
Q Consensus 247 ~~~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~~~-~i~~v~----~G~~~~~-~l~~~g~v~~~G~n~~g 318 (323)
..|++++..+|+||+.|-...+.- .+.......+....... ....+. .-.+|++ ++..+|+||..|.+.++
T Consensus 457 ~~~~~~~l~~g~i~v~GG~~~~~~-~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~ 533 (656)
T 1k3i_A 457 TFHTSVVLPDGSTFITGGQRRGIP-FEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCG 533 (656)
T ss_dssp BSCEEEECTTSCEEEECCBSBCCT-TCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCT
T ss_pred ccCCeEECCCCCEEEECCcccCcC-cCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCCCCC
Confidence 356777777999999986443221 11111111111111111 122221 1235654 45689999999987654
No 44
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=87.35 E-value=22 Score=34.30 Aligned_cols=181 Identities=10% Similarity=0.023 Sum_probs=91.7
Q ss_pred eEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeCcc--ceEEEEcCCcEEEEeCCCCccccCC
Q 020659 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGA--HTLFLTETGCVYATGLNDFGQLGIS 106 (323)
Q Consensus 29 ~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g~~--~~~~lt~~g~v~~~G~n~~gqlg~~ 106 (323)
..+++-..++.|++|-..+.. ....+.. ....|..++-... ..+.-..||.|..|-.....
T Consensus 68 ~~l~~~~~dg~i~vw~~~~~~-----------~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~----- 130 (814)
T 3mkq_A 68 NWIIVGSDDFRIRVFNYNTGE-----------KVVDFEA-HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW----- 130 (814)
T ss_dssp TEEEEEETTSEEEEEETTTCC-----------EEEEEEC-CSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS-----
T ss_pred CEEEEEeCCCeEEEEECCCCc-----------EEEEEec-CCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc-----
Confidence 344444578888888655321 1111111 1234666655433 34455678889888643210
Q ss_pred CCCCceecceEecCCCCceEEEEcCC---CeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEeccc--CCceEEE
Q 020659 107 ENIGYSLEPLRISGLKKEVVQISTGY---HHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECL--SGIFTKQ 181 (323)
Q Consensus 107 ~~~~~~~~p~~~~~~~~~i~~i~~g~---~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~--~~~~i~~ 181 (323)
.....+......|..++... ...+....+|.|+.|-..... ....+... .......
T Consensus 131 ------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~-------------~~~~~~~~~~~~v~~~~ 191 (814)
T 3mkq_A 131 ------ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-------------PNFTLTTGQERGVNYVD 191 (814)
T ss_dssp ------EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS-------------CSEEEECCCTTCCCEEE
T ss_pred ------eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-------------ceeEEecCCCCCEEEEE
Confidence 12223333344677666543 345556778999999653210 11111111 2222333
Q ss_pred Eec--CCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCCC--eeEEEecCC
Q 020659 182 AAL--GFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFL--HSACIDENG 257 (323)
Q Consensus 182 i~~--g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~--~~~~lt~~g 257 (323)
.+. .....+....+|.|..|-.... .....+.. ....|..++.... ..+.-..||
T Consensus 192 ~~~~~~~~~l~~~~~dg~i~~~d~~~~--------------------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg 250 (814)
T 3mkq_A 192 YYPLPDKPYMITASDDLTIKIWDYQTK--------------------SCVATLEG-HMSNVSFAVFHPTLPIIISGSEDG 250 (814)
T ss_dssp ECCSTTCCEEEEECTTSEEEEEETTTT--------------------EEEEEEEC-CSSCEEEEEECSSSSEEEEEETTS
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCC--------------------cEEEEEcC-CCCCEEEEEEcCCCCEEEEEeCCC
Confidence 333 3445666678889999953210 01111211 1224666665544 345556789
Q ss_pred cEEEEeCCC
Q 020659 258 RVYIFGDRA 266 (323)
Q Consensus 258 ~ly~wG~n~ 266 (323)
.|+.|-...
T Consensus 251 ~v~vwd~~~ 259 (814)
T 3mkq_A 251 TLKIWNSST 259 (814)
T ss_dssp CEEEEETTT
T ss_pred eEEEEECCC
Confidence 999997654
No 45
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=87.01 E-value=14 Score=31.89 Aligned_cols=136 Identities=10% Similarity=0.021 Sum_probs=71.5
Q ss_pred EecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeC--ccceEEEEcCCcEEEEeCCCCccccCCCC
Q 020659 31 ISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG--GAHTLFLTETGCVYATGLNDFGQLGISEN 108 (323)
Q Consensus 31 ~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~ 108 (323)
+++...++.|+.|-....-. ...+. .....|..++.. ....+.-..+|.|+.|-....
T Consensus 220 ~~~~~~~g~i~~~d~~~~~~-----------~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-------- 279 (425)
T 1r5m_A 220 FVIPGPKGAIFVYQITEKTP-----------TGKLI-GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG-------- 279 (425)
T ss_dssp EEEECGGGCEEEEETTCSSC-----------SEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB--------
T ss_pred EEEEcCCCeEEEEEcCCCce-----------eeeec-cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC--------
Confidence 44445778888887654210 11111 112345555543 334555566888999854321
Q ss_pred CCceecceEecCCCCceEEEEcCCC-eEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEecC--
Q 020659 109 IGYSLEPLRISGLKKEVVQISTGYH-HSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG-- 185 (323)
Q Consensus 109 ~~~~~~p~~~~~~~~~i~~i~~g~~-~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g-- 185 (323)
.....+......|..++...+ ..+....+|.|+.|-.... .....+. .....|..++..
T Consensus 280 ----~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~-------------~~~~~~~-~~~~~i~~~~~s~~ 341 (425)
T 1r5m_A 280 ----NSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQN-------------TLLALSI-VDGVPIFAGRISQD 341 (425)
T ss_dssp ----SCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTT-------------EEEEEEE-CTTCCEEEEEECTT
T ss_pred ----ccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCC-------------cEeEecc-cCCccEEEEEEcCC
Confidence 122223333446666655433 5566678899999965321 1111111 112346666554
Q ss_pred CCeEEEEECCCCEEEEeCC
Q 020659 186 FEQSVAVTGGGKVLSWGAG 204 (323)
Q Consensus 186 ~~~~~~l~~~g~v~~~G~n 204 (323)
....++-..+|.|+.|-..
T Consensus 342 ~~~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 342 GQKYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp SSEEEEEETTSCEEEEECH
T ss_pred CCEEEEEECCCeEEEEECC
Confidence 4456666788999999643
No 46
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=86.82 E-value=14 Score=31.46 Aligned_cols=244 Identities=6% Similarity=-0.133 Sum_probs=113.1
Q ss_pred eeeEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeC--ccceEEEEcCCcEEEEeCCCCcccc
Q 020659 27 CKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG--GAHTLFLTETGCVYATGLNDFGQLG 104 (323)
Q Consensus 27 ~~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g--~~~~~~lt~~g~v~~~G~n~~gqlg 104 (323)
...++++-..++.|+.|-.... .......+.. ....|..++-. ....+.-..||.|..|-....
T Consensus 19 ~~~~l~~~~~d~~v~i~~~~~~---------~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---- 84 (372)
T 1k8k_C 19 DRTQIAICPNNHEVHIYEKSGN---------KWVQVHELKE-HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR---- 84 (372)
T ss_dssp TSSEEEEECSSSEEEEEEEETT---------EEEEEEEEEC-CSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT----
T ss_pred CCCEEEEEeCCCEEEEEeCCCC---------cEEeeeeecC-CCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC----
Confidence 3445555557888888864321 0001111111 22346666554 334455567888888854221
Q ss_pred CCCCCCceecceEecCCCCceEEEEcC--CCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEE
Q 020659 105 ISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQA 182 (323)
Q Consensus 105 ~~~~~~~~~~p~~~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i 182 (323)
.......+......|..++.. ....+....+|.++.|-...... ......+.......|..+
T Consensus 85 ------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~----------~~~~~~~~~~~~~~i~~~ 148 (372)
T 1k8k_C 85 ------TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND----------WWVCKHIKKPIRSTVLSL 148 (372)
T ss_dssp ------EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT----------EEEEEEECTTCCSCEEEE
T ss_pred ------eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCc----------ceeeeeeecccCCCeeEE
Confidence 001111122233466666553 34455557788888885432110 011111111112346666
Q ss_pred ecC--CCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeeccc--CCCcEEEEecCCC--eeEEEecC
Q 020659 183 ALG--FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKEL--EGVKVKIAAAGFL--HSACIDEN 256 (323)
Q Consensus 183 ~~g--~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~--~~~~i~~i~~g~~--~~~~lt~~ 256 (323)
+.. ....+.-..+|.|+.|-..... +........ ..........+..+ ....|..++...+ ..+....|
T Consensus 149 ~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 223 (372)
T 1k8k_C 149 DWHPNSVLLAAGSCDFKCRIFSAYIKE-VEERPAPTP----WGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD 223 (372)
T ss_dssp EECTTSSEEEEEETTSCEEEEECCCTT-TSCCCCCBT----TBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred EEcCCCCEEEEEcCCCCEEEEEccccc-ccccccccc----cccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCC
Confidence 554 3455666789999999743211 100000000 00000011111111 1234666665443 44555678
Q ss_pred CcEEEEeCCCCCcCCcCCCCCcCCCeeecCC-CCeeEEEec-CCeeEEEEcCCCEEEeeCCC
Q 020659 257 GRVYIFGDRAVDKMLFQEGNHARRPSLISKL-PYSEEVVCG-GYHTCVLTSGGELYTWGSNE 316 (323)
Q Consensus 257 g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~~-~~i~~v~~G-~~~~~~l~~~g~v~~~G~n~ 316 (323)
|.|..|-......+ ..+... ..+..++.. +...++...+|.|..|-...
T Consensus 224 ~~i~i~d~~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 224 STVCLADADKKMAV-----------ATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp TEEEEEEGGGTTEE-----------EEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred CEEEEEECCCCcee-----------EEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence 88888875432111 112111 235555543 33455566888888886443
No 47
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=86.80 E-value=14 Score=31.71 Aligned_cols=199 Identities=8% Similarity=0.029 Sum_probs=97.4
Q ss_pred ceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcCCCe---EEEEEcCCcEEEEeCCCCCCC-CC
Q 020659 82 HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHH---SSAITVDGELYMWGKNSNGQL-GL 157 (323)
Q Consensus 82 ~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g~~~---~~~lt~~g~v~~~G~n~~gql-g~ 157 (323)
..++-..+|.|+.|-.... .....+......|..++..... .+.-..+|.|+.|-....... -.
T Consensus 158 ~~~~~~~~~~v~~~d~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~ 225 (408)
T 4a11_B 158 LVAVGTRGPKVQLCDLKSG------------SCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLIT 225 (408)
T ss_dssp EEEEEESSSSEEEEESSSS------------CCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEE
T ss_pred EEEEEcCCCeEEEEeCCCc------------ceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccc
Confidence 4556678899999965321 1122333334467776654432 455678899999975432211 00
Q ss_pred CCC-CCcccccceEecccCCceEEEEecC--CCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecc
Q 020659 158 GKK-AAKVIPIPTKVECLSGIFTKQAALG--FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKE 234 (323)
Q Consensus 158 ~~~-~~~~~~~p~~~~~~~~~~i~~i~~g--~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~ 234 (323)
-.. .......+..........|..++.. ..+.+....+|.|..|-.......-... .......
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--------------~~~~~~~ 291 (408)
T 4a11_B 226 LDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNY--------------GKVCNNS 291 (408)
T ss_dssp CCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCC--------------CCCCCCC
T ss_pred ccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecc--------------ccccccc
Confidence 000 0000000000001112246666554 3466677889999999754322111000 0000001
Q ss_pred cCCCcEEEEecCCCeeEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecC-CCCeeEEEecCC--eeEEEEcCCCEEE
Q 020659 235 LEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK-LPYSEEVVCGGY--HTCVLTSGGELYT 311 (323)
Q Consensus 235 ~~~~~i~~i~~g~~~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~-~~~i~~v~~G~~--~~~~l~~~g~v~~ 311 (323)
.....+..........++...++.|+.|-......+ ..+.. ...|..++.... ..+.-..||.|..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~-----------~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 360 (408)
T 4a11_B 292 KKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQI-----------TMLKGHYKTVDCCVFQSNFQELYSGSRDCNILA 360 (408)
T ss_dssp SSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEE-----------EEECCCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cccceeEEecCCCceEEEEecCCEEEEEECcCCcce-----------eeeccCCCeEEEEEEcCCCCEEEEECCCCeEEE
Confidence 111122222334455666678899999986542111 11221 224666665543 3444557999999
Q ss_pred eeCCCC
Q 020659 312 WGSNEN 317 (323)
Q Consensus 312 ~G~n~~ 317 (323)
|-.+..
T Consensus 361 w~~~~~ 366 (408)
T 4a11_B 361 WVPSLY 366 (408)
T ss_dssp EEECC-
T ss_pred EeCCCC
Confidence 976554
No 48
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=86.61 E-value=13 Score=31.13 Aligned_cols=203 Identities=9% Similarity=-0.079 Sum_probs=104.0
Q ss_pred ceEEEEeCc--cceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcC--CC-eEEEEEcCCcEEE
Q 020659 72 SLKALACGG--AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YH-HSSAITVDGELYM 146 (323)
Q Consensus 72 ~i~~v~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g--~~-~~~~lt~~g~v~~ 146 (323)
.|..++-.. ...++-..||.|+.|-.... .....+..+......|..++.. .. ..+.-..+|.|+.
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQ---------AKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETT---------TTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCC---------CccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence 466665543 33444567899998865321 1111223333344466666543 34 5666678899999
Q ss_pred EeC-CCCCCCCCCCCCCcccccceEeccc-CCceEEEEecC-CCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccc
Q 020659 147 WGK-NSNGQLGLGKKAAKVIPIPTKVECL-SGIFTKQAALG-FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRS 223 (323)
Q Consensus 147 ~G~-n~~gqlg~~~~~~~~~~~p~~~~~~-~~~~i~~i~~g-~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~ 223 (323)
|-. .. ++ ...+... ....|..++.. ....+....+|.|..|-...... .. .
T Consensus 84 wd~~~~-~~-------------~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~---------~ 137 (342)
T 1yfq_A 84 VDLIGS-PS-------------FQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD---GV---------I 137 (342)
T ss_dssp ECSSSS-SS-------------EEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT---BC---------E
T ss_pred EEeccC-Cc-------------eEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccc---cc---------c
Confidence 954 21 11 1122210 12235555433 56677778899999994321000 00 0
Q ss_pred cccccceeecccCCCcEEEEecCCCeeEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecCCCCeeEEEecC---Cee
Q 020659 224 TSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGG---YHT 300 (323)
Q Consensus 224 ~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~~~~i~~v~~G~---~~~ 300 (323)
.....+...-. ....|..++......++.+.+|.|+.|-....+.. ............+..++... ...
T Consensus 138 ~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-------~~~~~~~~~~~~i~~i~~~~~~~~~l 209 (342)
T 1yfq_A 138 AVKNLNSNNTK-VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD-------NGTIEESGLKYQIRDVALLPKEQEGY 209 (342)
T ss_dssp EEEESCSSSSS-SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTC-------CCEEEECSCSSCEEEEEECSGGGCEE
T ss_pred cccCCeeeEEe-eCCceEEEEecCCcEEEEeCCCeEEEEECCccccc-------cceeeecCCCCceeEEEECCCCCCEE
Confidence 00001111101 22367788887777777788999999986541110 00001111222456666543 444
Q ss_pred EEEEcCCCEEEeeCCCC
Q 020659 301 CVLTSGGELYTWGSNEN 317 (323)
Q Consensus 301 ~~l~~~g~v~~~G~n~~ 317 (323)
++-..+|.|..|-.+..
T Consensus 210 ~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 210 ACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp EEEETTSEEEEEECCTT
T ss_pred EEEecCCcEEEEEEcCC
Confidence 55567888888765543
No 49
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=86.36 E-value=15 Score=31.61 Aligned_cols=191 Identities=11% Similarity=0.034 Sum_probs=95.6
Q ss_pred ceEEEEeCcc--ceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcC---CCeEEEEEcCCcEEE
Q 020659 72 SLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG---YHHSSAITVDGELYM 146 (323)
Q Consensus 72 ~i~~v~~g~~--~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g---~~~~~~lt~~g~v~~ 146 (323)
.|..|+...+ ..+.-..||.|..|-.... .....+......|..++.. ....+....+|.|..
T Consensus 141 ~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~------------~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~ 208 (357)
T 4g56_B 141 IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK------------AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILL 208 (357)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEETTTT------------EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEE
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEECCCC------------cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEE
Confidence 4666665543 3334457888998854321 1222233334467776653 234555677899999
Q ss_pred EeCCCCCCCCCCCCCCcccccceEecccCCceEEEEecC---CCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccc
Q 020659 147 WGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG---FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRS 223 (323)
Q Consensus 147 ~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g---~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~ 223 (323)
|-......+ ...........+..++.. ....+.-+.++.|+.|-....
T Consensus 209 wd~~~~~~~------------~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~----------------- 259 (357)
T 4g56_B 209 WDTRKPKPA------------TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP----------------- 259 (357)
T ss_dssp CCTTSSSCB------------CBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-----------------
T ss_pred EECCCCcee------------eeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC-----------------
Confidence 843211000 000001112346666543 223334478899999953210
Q ss_pred cccccceeecccCCCcEEEEecCCC---eeEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecCCCCeeEEEecC-C-
Q 020659 224 TSEYTPRLIKELEGVKVKIAAAGFL---HSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGG-Y- 298 (323)
Q Consensus 224 ~~~~~p~~i~~~~~~~i~~i~~g~~---~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~~~~i~~v~~G~-~- 298 (323)
.....+.. ....|..++.... ..+.-..||.|+.|-... +++- ..+.....|..|+... .
T Consensus 260 ---~~~~~~~~-~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~-~~~~----------~~~~H~~~V~~vafsP~d~ 324 (357)
T 4g56_B 260 ---DSAQTSAV-HSQNITGLAYSYHSSPFLASISEDCTVAVLDADF-SEVF----------RDLSHRDFVTGVAWSPLDH 324 (357)
T ss_dssp ---GGCEEECC-CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS-CEEE----------EECCCSSCEEEEEECSSST
T ss_pred ---cEeEEEec-cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC-CcEe----------EECCCCCCEEEEEEeCCCC
Confidence 01111211 2235777775433 233456789999995432 1110 1122223577887653 2
Q ss_pred -eeEEEEcCCCEEEeeCCCCC
Q 020659 299 -HTCVLTSGGELYTWGSNENG 318 (323)
Q Consensus 299 -~~~~l~~~g~v~~~G~n~~g 318 (323)
..+.-..||+|..|=....+
T Consensus 325 ~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 325 SKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp TEEEEEETTSCEEEEECC---
T ss_pred CEEEEEcCCCeEEEEECCCCC
Confidence 22334579999999765543
No 50
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=85.78 E-value=15 Score=30.98 Aligned_cols=67 Identities=7% Similarity=-0.002 Sum_probs=39.6
Q ss_pred ceEEEEeCcc--ceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcC--CCeEEEEEcCCcEEEE
Q 020659 72 SLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYMW 147 (323)
Q Consensus 72 ~i~~v~~g~~--~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~ 147 (323)
.|..++.... ..+.-..||.|+.|-.... .....+......|..++.. ....+....+|.|+.|
T Consensus 34 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 34 PLTQVKYNKEGDLLFSCSKDSSASVWYSLNG------------ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW 101 (369)
T ss_dssp CEEEEEECTTSCEEEEEESSSCEEEEETTTC------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred eEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc------------hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 4777766543 3444456889999954321 1223333344467666654 3455566788999999
Q ss_pred eCC
Q 020659 148 GKN 150 (323)
Q Consensus 148 G~n 150 (323)
-..
T Consensus 102 d~~ 104 (369)
T 3zwl_B 102 DVS 104 (369)
T ss_dssp ETT
T ss_pred ECC
Confidence 653
No 51
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=85.18 E-value=17 Score=32.35 Aligned_cols=109 Identities=9% Similarity=-0.027 Sum_probs=64.7
Q ss_pred ecceEecCCCCceEEEEcCCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEecCCCeEEEE
Q 020659 113 LEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAV 192 (323)
Q Consensus 113 ~~p~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~~~~l 192 (323)
.+|.....++. |.+++. ....+++..++.|..|--....+ ......++ ..+.++.+.....+++
T Consensus 79 ~~~~~~~~lp~-V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~-------------~~~~~~~~-~~v~~i~~~~p~~av~ 142 (388)
T 1xip_A 79 LTFKWEKEIPD-VIFVCF-HGDQVLVSTRNALYSLDLEELSE-------------FRTVTSFE-KPVFQLKNVNNTLVIL 142 (388)
T ss_dssp CCCSEEEECTT-EEEEEE-ETTEEEEEESSEEEEEESSSTTC-------------EEEEEECS-SCEEEEEECSSEEEEE
T ss_pred ccceEEeeCCC-eeEEEE-CCCEEEEEcCCcEEEEEchhhhc-------------cCccceee-cceeeEEecCCCEEEE
Confidence 34533333665 999999 77888888999999986543221 11111111 2355665655557778
Q ss_pred ECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCCCeeEEEecCCcEEEE
Q 020659 193 TGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIF 262 (323)
Q Consensus 193 ~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~ly~w 262 (323)
+.+|.|+.|--... + ..+ + ...|..++-...-.++...||++..|
T Consensus 143 ~~dG~L~v~dl~~~-~------------------~~~--~----~~~Vs~v~WSpkG~~vg~~dg~i~~~ 187 (388)
T 1xip_A 143 NSVNDLSALDLRTK-S------------------TKQ--L----AQNVTSFDVTNSQLAVLLKDRSFQSF 187 (388)
T ss_dssp ETTSEEEEEETTTC-C------------------EEE--E----EESEEEEEECSSEEEEEETTSCEEEE
T ss_pred ECCCCEEEEEccCC-c------------------ccc--c----cCCceEEEEcCCceEEEEcCCcEEEE
Confidence 99999999953211 0 011 1 12466666666666666677776666
No 52
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=85.16 E-value=18 Score=31.26 Aligned_cols=66 Identities=14% Similarity=0.106 Sum_probs=37.7
Q ss_pred ceEEEEeCcc--ceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcC--CCeEEEEEcCCcEEEE
Q 020659 72 SLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYMW 147 (323)
Q Consensus 72 ~i~~v~~g~~--~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~ 147 (323)
.|..++-... ..+.-..+|.|+.|-.. + .....+......|..++.. ....+....+|.++.|
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~~--~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 176 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWNKT--G-----------ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILW 176 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETT--S-----------CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEeCC--C-----------CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEE
Confidence 5666666533 44555678899999521 1 1122233334466666553 3445556678888888
Q ss_pred eCC
Q 020659 148 GKN 150 (323)
Q Consensus 148 G~n 150 (323)
-..
T Consensus 177 d~~ 179 (425)
T 1r5m_A 177 NVI 179 (425)
T ss_dssp ETT
T ss_pred ECC
Confidence 653
No 53
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=84.50 E-value=25 Score=32.34 Aligned_cols=146 Identities=8% Similarity=0.005 Sum_probs=79.8
Q ss_pred ceEEEEeCcc---ceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEe-c---CCCCceEEEEc-CCCeEEEEEcCCc
Q 020659 72 SLKALACGGA---HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRI-S---GLKKEVVQIST-GYHHSSAITVDGE 143 (323)
Q Consensus 72 ~i~~v~~g~~---~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~-~---~~~~~i~~i~~-g~~~~~~lt~~g~ 143 (323)
.|..++.... ..+....+|.|+.|-..... ....+ . .....|..++. .....+....+|.
T Consensus 208 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~------------~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~ 275 (615)
T 1pgu_A 208 FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE------------FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADAT 275 (615)
T ss_dssp CEEEEEECSTTCCEEEEEETTCCEEEEETTTCC------------EEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSE
T ss_pred eEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC------------EeEEecccccccCCceEEEEEcCCCEEEEEcCCCc
Confidence 4777766544 45556778999999653211 11122 1 23346666655 3445555667899
Q ss_pred EEEEeCCCCCCCCCCCCCCcccccceEeccc---CCceEEEEec-CCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccc
Q 020659 144 LYMWGKNSNGQLGLGKKAAKVIPIPTKVECL---SGIFTKQAAL-GFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILG 219 (323)
Q Consensus 144 v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~---~~~~i~~i~~-g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~ 219 (323)
+..|-..... ....+... ....+..+.. ...+.++.+.+|.|+.|-...
T Consensus 276 i~~wd~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~-------------- 328 (615)
T 1pgu_A 276 IRVWDVTTSK-------------CVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGH-------------- 328 (615)
T ss_dssp EEEEETTTTE-------------EEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTE--------------
T ss_pred EEEEECCCCc-------------EEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCC--------------
Confidence 9999653210 00111111 0112333322 555677778899999995321
Q ss_pred cccccccccceeecccCCCcEEEEecCCCeeEEEecCCcEEEEeCC
Q 020659 220 FLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDR 265 (323)
Q Consensus 220 ~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~ly~wG~n 265 (323)
..+..........|..++. .. .+.-..||.|..|-..
T Consensus 329 -------~~~~~~~~~~~~~v~~~~~-~~-l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 329 -------DEVLKTISGHNKGITALTV-NP-LISGSYDGRIMEWSSS 365 (615)
T ss_dssp -------EEEEEEECCCSSCEEEEET-TT-TEEEETTSCEEETTTT
T ss_pred -------CcEEEEEeCCCCCEEEEEe-cC-cEEECCCCeEEEEEch
Confidence 1111111112346888888 66 6677788999988654
No 54
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=84.46 E-value=20 Score=31.21 Aligned_cols=105 Identities=10% Similarity=-0.002 Sum_probs=56.9
Q ss_pred eeEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeCcc---ceEEEEcCCcEEEEeCCCCcccc
Q 020659 28 KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGA---HTLFLTETGCVYATGLNDFGQLG 104 (323)
Q Consensus 28 ~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g~~---~~~~lt~~g~v~~~G~n~~gqlg 104 (323)
...+++-..++.|.+|-....+... ....|..........|..++.... ..+.-..||.|+.|-....
T Consensus 94 ~~~l~s~s~dg~v~vw~~~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~---- 164 (402)
T 2aq5_A 94 DNVIASGSEDCTVMVWEIPDGGLVL-----PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG---- 164 (402)
T ss_dssp TTEEEEEETTSEEEEEECCTTCCSS-----CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT----
T ss_pred CCEEEEEeCCCeEEEEEccCCCCcc-----ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC----
Confidence 3455565688889999766542211 111111111112245777766543 3444567899999965321
Q ss_pred CCCCCCceecceEe--cCCCCceEEEEcC--CCeEEEEEcCCcEEEEeC
Q 020659 105 ISENIGYSLEPLRI--SGLKKEVVQISTG--YHHSSAITVDGELYMWGK 149 (323)
Q Consensus 105 ~~~~~~~~~~p~~~--~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~ 149 (323)
.....+ ......|..++.. ....+....+|.|+.|-.
T Consensus 165 --------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 205 (402)
T 2aq5_A 165 --------AAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEP 205 (402)
T ss_dssp --------EEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEET
T ss_pred --------CccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeC
Confidence 112223 2234467666654 344555667899999964
No 55
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=83.20 E-value=21 Score=30.55 Aligned_cols=214 Identities=9% Similarity=0.022 Sum_probs=109.4
Q ss_pred EEeCccceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcC-----CCeEEEEEcCCcEEEEeCC
Q 020659 76 LACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG-----YHHSSAITVDGELYMWGKN 150 (323)
Q Consensus 76 v~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g-----~~~~~~lt~~g~v~~~G~n 150 (323)
++.+..+.+++|+.|++|..-..+-...+..........-..+. ..+.|+.+... ..+.+++|++|.++..-..
T Consensus 54 ~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~ 132 (312)
T 1suu_A 54 CVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFEST 132 (312)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSCC-------CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGG
T ss_pred EECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHH
Confidence 45567779999999999988664332222211111101111111 12367766543 4568889999999998765
Q ss_pred CCCCCCCCCCCCcccccceE-ecccCCceEEEEe--cCCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccc
Q 020659 151 SNGQLGLGKKAAKVIPIPTK-VECLSGIFTKQAA--LGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEY 227 (323)
Q Consensus 151 ~~gqlg~~~~~~~~~~~p~~-~~~~~~~~i~~i~--~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~ 227 (323)
++-... . .... +...++.+++.+. .+..+.+++|++|.+.-+-..+.-..|+....
T Consensus 133 ~~~~~r----~-----~G~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~G------------ 191 (312)
T 1suu_A 133 DFKAVK----S-----RGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQG------------ 191 (312)
T ss_dssp GGCC-------------CEECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCC------------
T ss_pred HhhccC----C-----CcEEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCC------------
Confidence 442110 0 0001 1111233455543 34667889999999998876655444543311
Q ss_pred cceeecccCCCcEEEEec--CCCeeEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCeee-cCCCCeeE--EEecCCeeEE
Q 020659 228 TPRLIKELEGVKVKIAAA--GFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLI-SKLPYSEE--VVCGGYHTCV 302 (323)
Q Consensus 228 ~p~~i~~~~~~~i~~i~~--g~~~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v-~~~~~i~~--v~~G~~~~~~ 302 (323)
-+.+...++..|+.+.. ...+.++++++|.+...-...+-..+.+..-... .... .....++. +.......++
T Consensus 192 -v~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~kGv~~-~~~~k~~~~~lv~~~~~~~~~~l~~ 269 (312)
T 1suu_A 192 -VCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGYTS-YKKSDKKAGSVVDAIAVSEDDEILL 269 (312)
T ss_dssp -EECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCCCEEC-SCTTCTTTCSEEEEEEECTTCEEEE
T ss_pred -eEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCCCCCEEe-eEccCCCCCeEEEEEEeCCCCEEEE
Confidence 11111123345555543 3445788889998777766555444332211100 0000 01112322 2235667778
Q ss_pred EEcCCCEEEee
Q 020659 303 LTSGGELYTWG 313 (323)
Q Consensus 303 l~~~g~v~~~G 313 (323)
++++|.+.-.-
T Consensus 270 ~t~~g~~~r~~ 280 (312)
T 1suu_A 270 VSKRSKALRTV 280 (312)
T ss_dssp EETTCEEEEEE
T ss_pred EeCCCeEEEEE
Confidence 88888665443
No 56
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=82.67 E-value=23 Score=30.59 Aligned_cols=229 Identities=12% Similarity=0.020 Sum_probs=119.8
Q ss_pred hhhhcccccceeeeEEecccCcceEEEeeCCCCCCCCCCCCCCeece--eEeccCCCCceEEEEeCc-----cceEEEEc
Q 020659 16 QDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRP--VVCSAFEKHSLKALACGG-----AHTLFLTE 88 (323)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p--~~v~~~~~~~i~~v~~g~-----~~~~~lt~ 88 (323)
.|....+.....|..++.-+++|.+|..-... |-...-...-.| ..++..++++|+.+.+.. ...+++|+
T Consensus 41 ~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~---lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~ 117 (327)
T 3uc1_A 41 DDIVAHFFVCSTHDLILFFTTQGRVYRAKAYD---LPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATR 117 (327)
T ss_dssp GGCEEEEEEEETTSEEEEEETTSEEEEEEGGG---SCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEET
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHH---CcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcC
Confidence 34444444444444444444888898876553 221111111222 334445678899887764 45788999
Q ss_pred CCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEE--EEcCCCeEEEEEcCCcEEEEeCC--CCCCCCCCCCCCcc
Q 020659 89 TGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQ--ISTGYHHSSAITVDGELYMWGKN--SNGQLGLGKKAAKV 164 (323)
Q Consensus 89 ~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~--i~~g~~~~~~lt~~g~v~~~G~n--~~gqlg~~~~~~~~ 164 (323)
+|.+--.-..++-... ..-..-..+.. .+.++. ++.+.++.+++|++|++|.+-.. +-..+|....-.+
T Consensus 118 ~G~iKr~~l~~~~~~~-----r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~- 190 (327)
T 3uc1_A 118 NGLVKKSKLTDFDSNR-----SGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQ- 190 (327)
T ss_dssp TSEEEEEEGGGGCCCC-----SSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEE-
T ss_pred CCEEEEeEHHHhhccc-----cCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCee-
Confidence 9988876544331100 00011111111 123443 34567889999999999999877 5444443322111
Q ss_pred cccceEecccCCceEEEEecCC--CeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEE
Q 020659 165 IPIPTKVECLSGIFTKQAALGF--EQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKI 242 (323)
Q Consensus 165 ~~~p~~~~~~~~~~i~~i~~g~--~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~ 242 (323)
.+...++.+|+.+..-. .+.+++|++|.+.-.-...|-..+++...- .-.++... +..++.
T Consensus 191 -----~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~-----------~~~~l~~~-~d~lv~ 253 (327)
T 3uc1_A 191 -----GMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGV-----------LTVMYDRR-RGRLVG 253 (327)
T ss_dssp -----SSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCE-----------ESSCCCTT-TCSEEE
T ss_pred -----eecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcE-----------EEEEecCC-CCeEEE
Confidence 12223445677765543 467788999876655433332222211100 00001000 122333
Q ss_pred E--ecCCCeeEEEecCCcEEEEeCCCCCcCC
Q 020659 243 A--AAGFLHSACIDENGRVYIFGDRAVDKML 271 (323)
Q Consensus 243 i--~~g~~~~~~lt~~g~ly~wG~n~~gqlg 271 (323)
+ ..+....+++|++|++..+-....-.+|
T Consensus 254 ~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~g 284 (327)
T 3uc1_A 254 ALIVDDDSELYAVTSGGGVIRTAARQVRKAG 284 (327)
T ss_dssp EEEECTTCEEEEEEGGGCEEEEEGGGSCBCC
T ss_pred EEEeCCCccEEEEcCCCeEEEEehhhccccC
Confidence 3 2356788999999999988665544444
No 57
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=82.59 E-value=21 Score=30.18 Aligned_cols=197 Identities=10% Similarity=0.046 Sum_probs=100.3
Q ss_pred ceEEEEeCccc--eEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcC----CCeEEEEEcCCcEE
Q 020659 72 SLKALACGGAH--TLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG----YHHSSAITVDGELY 145 (323)
Q Consensus 72 ~i~~v~~g~~~--~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g----~~~~~~lt~~g~v~ 145 (323)
.|..++...+. .+.-..||.|..|-... ........+......|..++.. ....+....+|.|.
T Consensus 13 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~----------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSDKTIKIFEVEG----------ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEEEET----------TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEecCC----------CcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 46666655333 33334688898885421 0111223333344477777754 45566667889999
Q ss_pred EEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEecCC----CeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccc
Q 020659 146 MWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF----EQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFL 221 (323)
Q Consensus 146 ~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~----~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~ 221 (323)
.|-.... ...+..........|..++... ...+....+|.|..|-......
T Consensus 83 iwd~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~------------- 137 (379)
T 3jrp_A 83 IWKEENG------------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT------------- 137 (379)
T ss_dssp EEEEETT------------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC-------------
T ss_pred EEEcCCC------------ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc-------------
Confidence 9964310 0011111111223466666653 4566678899999996432110
Q ss_pred cccccccceeecccCCCcEEEEecCC---------------CeeEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecC
Q 020659 222 RSTSEYTPRLIKELEGVKVKIAAAGF---------------LHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK 286 (323)
Q Consensus 222 ~~~~~~~p~~i~~~~~~~i~~i~~g~---------------~~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~ 286 (323)
..+..+. .....|..++... ...++-..||.|+.|-.....+. ......+..
T Consensus 138 -----~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------~~~~~~~~~ 204 (379)
T 3jrp_A 138 -----TSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-------YVLESTLEG 204 (379)
T ss_dssp -----CCEEEEE-CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE-------EEEEEEECC
T ss_pred -----eeeEEec-CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc-------eeeEEEEec
Confidence 0111111 1122455555543 34555677899999965331100 000111222
Q ss_pred -CCCeeEEEecCC-----eeEEEEcCCCEEEeeCCC
Q 020659 287 -LPYSEEVVCGGY-----HTCVLTSGGELYTWGSNE 316 (323)
Q Consensus 287 -~~~i~~v~~G~~-----~~~~l~~~g~v~~~G~n~ 316 (323)
...|..++.... ..+....||.|..|-...
T Consensus 205 h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 205 HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred ccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence 224666666543 344455788888886543
No 58
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=82.41 E-value=21 Score=29.96 Aligned_cols=177 Identities=12% Similarity=0.100 Sum_probs=100.0
Q ss_pred cCCCCceEEEEeC---ccceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEE--cCCCeEEEEEcC
Q 020659 67 AFEKHSLKALACG---GAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIS--TGYHHSSAITVD 141 (323)
Q Consensus 67 ~~~~~~i~~v~~g---~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~--~g~~~~~~lt~~ 141 (323)
..++++|..+.+- ....+++|++|.+.-.-..++-+- .. -..-..+. ..+.++.+. .+....+++|++
T Consensus 64 l~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~----~~--G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~ 136 (276)
T 3no0_A 64 KSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYK----AQ--GMPIIKLT-EGDEVVSIASSVDETHILLFTKK 136 (276)
T ss_dssp SSTTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTC----ST--TEECSCCC-TTCCEEEEEECCSSCEEEEEETT
T ss_pred CCCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhh----cC--CeEEEecC-CCCEEEEEEEeCCCCEEEEEECC
Confidence 4467788888761 246889999999887765443210 00 00111111 112444433 355678999999
Q ss_pred CcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEecC--CCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccc
Q 020659 142 GELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG--FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILG 219 (323)
Q Consensus 142 g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g--~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~ 219 (323)
|++|.+-..+...+|....-.+ .+...++.+|+.+... ..+.+++|++|.+.-.-..++-..+++.....
T Consensus 137 G~~~r~~~~eip~~gR~a~Gv~------~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~-- 208 (276)
T 3no0_A 137 GRVARFSVREVPPSTPGARGVQ------GIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTE-- 208 (276)
T ss_dssp SEEEEEEGGGSCBCCTTCCCEE------CCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEE--
T ss_pred CEEEEEEhhhCCCcCCCCCCEE------EEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceE--
Confidence 9999998766655554322211 1222234467665543 34678889999887776555544333321100
Q ss_pred cccccccccceeecccCCCcEEEEe--cCCCeeEEEecCCcEEE--EeCCCCCcCC
Q 020659 220 FLRSTSEYTPRLIKELEGVKVKIAA--AGFLHSACIDENGRVYI--FGDRAVDKML 271 (323)
Q Consensus 220 ~~~~~~~~~p~~i~~~~~~~i~~i~--~g~~~~~~lt~~g~ly~--wG~n~~gqlg 271 (323)
.+ .++.+++.+. .+....+++|++|++.. +-.++.-.+|
T Consensus 209 -----------~i--~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~i~~~~ 251 (276)
T 3no0_A 209 -----------VS--GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKDIPLST 251 (276)
T ss_dssp -----------CC--CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGGSCBCC
T ss_pred -----------EE--cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHHCCCcC
Confidence 00 1122344332 35567899999999998 7765544444
No 59
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=82.22 E-value=24 Score=30.60 Aligned_cols=145 Identities=10% Similarity=-0.040 Sum_probs=75.9
Q ss_pred cccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeCc---cceEEEEcCCcEEEEeCCCCccccCCCCC
Q 020659 33 STLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGG---AHTLFLTETGCVYATGLNDFGQLGISENI 109 (323)
Q Consensus 33 ~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g~---~~~~~lt~~g~v~~~G~n~~gqlg~~~~~ 109 (323)
+-..++.|++|-....+.+... ...+. --...|..++... ...+.-..||.|..|-........
T Consensus 52 ~~~~~g~i~v~~~~~~~~~~~~-------~~~~~-~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~----- 118 (402)
T 2aq5_A 52 EASGGGAFLVLPLGKTGRVDKN-------VPLVC-GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL----- 118 (402)
T ss_dssp CCSSSCCEEEEETTCCEECCTT-------CCCBC-CCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS-----
T ss_pred EEcCCCEEEEEECccCCCCCCC-------CceEe-cCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc-----
Confidence 3457888888887655443110 00011 0123466666643 344445678999999765432110
Q ss_pred CceecceEecCCCCceEEEEcCCC---eEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEec-ccCCceEEEEecC
Q 020659 110 GYSLEPLRISGLKKEVVQISTGYH---HSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVE-CLSGIFTKQAALG 185 (323)
Q Consensus 110 ~~~~~p~~~~~~~~~i~~i~~g~~---~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~-~~~~~~i~~i~~g 185 (323)
........+......|..++.... ..+.-..+|.|+.|-.... .....+. ......|..++..
T Consensus 119 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~-------------~~~~~~~~~~~~~~v~~~~~~ 185 (402)
T 2aq5_A 119 PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG-------------AAVLTLGPDVHPDTIYSVDWS 185 (402)
T ss_dssp CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT-------------EEEEEECTTTCCSCEEEEEEC
T ss_pred ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC-------------CccEEEecCCCCCceEEEEEC
Confidence 001122333444457777766543 4445577899999964321 1111120 1112246666553
Q ss_pred --CCeEEEEECCCCEEEEeC
Q 020659 186 --FEQSVAVTGGGKVLSWGA 203 (323)
Q Consensus 186 --~~~~~~l~~~g~v~~~G~ 203 (323)
....+....+|.|+.|-.
T Consensus 186 ~~~~~l~~~~~d~~i~iwd~ 205 (402)
T 2aq5_A 186 RDGALICTSCRDKRVRVIEP 205 (402)
T ss_dssp TTSSCEEEEETTSEEEEEET
T ss_pred CCCCEEEEEecCCcEEEEeC
Confidence 345666678899999964
No 60
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=80.25 E-value=25 Score=29.46 Aligned_cols=190 Identities=12% Similarity=0.020 Sum_probs=95.7
Q ss_pred CceEEEEeCccc-eEEEEc-----CCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcCC-----CeEEEEE
Q 020659 71 HSLKALACGGAH-TLFLTE-----TGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY-----HHSSAIT 139 (323)
Q Consensus 71 ~~i~~v~~g~~~-~~~lt~-----~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g~-----~~~~~lt 139 (323)
..|..|+..... .++.+. ||.|+.|-..... ..+.........|..++... ...+.-.
T Consensus 19 ~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~ 87 (357)
T 3i2n_A 19 YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD-----------LKLLREIEKAKPIKCGTFGATSLQQRYLATGD 87 (357)
T ss_dssp SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSS-----------EEEEEEEEESSCEEEEECTTCCTTTCCEEEEE
T ss_pred CceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCc-----------ccceeeecccCcEEEEEEcCCCCCCceEEEec
Confidence 357777766533 333333 7889998653211 11111112234777777755 3445557
Q ss_pred cCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEe--------cCCCeEEEEECCCCEEEEeCCCCCCcCC
Q 020659 140 VDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAA--------LGFEQSVAVTGGGKVLSWGAGGSGRLGH 211 (323)
Q Consensus 140 ~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~--------~g~~~~~~l~~~g~v~~~G~n~~gqlG~ 211 (323)
.+|.|..|-..... .....+... ...|..+. ....+.+.-..+|.|..|-......
T Consensus 88 ~dg~i~iwd~~~~~------------~~~~~~~~~-~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~--- 151 (357)
T 3i2n_A 88 FGGNLHIWNLEAPE------------MPVYSVKGH-KEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD--- 151 (357)
T ss_dssp TTSCEEEECTTSCS------------SCSEEECCC-SSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS---
T ss_pred CCCeEEEEeCCCCC------------ccEEEEEec-ccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC---
Confidence 78999999654211 011112211 22455552 2334666668899999995432110
Q ss_pred CCCCCccccccccccccceeec---ccCCCcEEEEe------cCCCeeEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCe
Q 020659 212 GQESSILGFLRSTSEYTPRLIK---ELEGVKVKIAA------AGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPS 282 (323)
Q Consensus 212 ~~~~~~~~~~~~~~~~~p~~i~---~~~~~~i~~i~------~g~~~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~ 282 (323)
....+. ......+..++ ......++-..+|.|+.|-...... ..
T Consensus 152 ----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----------~~ 204 (357)
T 3i2n_A 152 ----------------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL-----------RW 204 (357)
T ss_dssp ----------------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE-----------EE
T ss_pred ----------------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce-----------ee
Confidence 011111 11122455555 3344455556789999997654211 11
Q ss_pred eecCCCCeeEEEecC-----CeeEEEEcCCCEEEeeC
Q 020659 283 LISKLPYSEEVVCGG-----YHTCVLTSGGELYTWGS 314 (323)
Q Consensus 283 ~v~~~~~i~~v~~G~-----~~~~~l~~~g~v~~~G~ 314 (323)
.......+..++... ...++-..+|+|+.|-.
T Consensus 205 ~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 241 (357)
T 3i2n_A 205 ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDM 241 (357)
T ss_dssp EEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEE
T ss_pred ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeC
Confidence 122223455666542 34444556888887753
No 61
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=80.19 E-value=25 Score=29.50 Aligned_cols=67 Identities=6% Similarity=-0.044 Sum_probs=36.0
Q ss_pred ceEEEEc--CCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEecC--CCeEEEEECCCCEE
Q 020659 124 EVVQIST--GYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG--FEQSVAVTGGGKVL 199 (323)
Q Consensus 124 ~i~~i~~--g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g--~~~~~~l~~~g~v~ 199 (323)
.+..++. .....++...+|.|+.|-....+ .....+.. ....|..++.. ....+..+.+|.|+
T Consensus 177 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~ 243 (369)
T 3zwl_B 177 AATVAGWSTKGKYIIAGHKDGKISKYDVSNNY------------EYVDSIDL-HEKSISDMQFSPDLTYFITSSRDTNSF 243 (369)
T ss_dssp CEEEEEECGGGCEEEEEETTSEEEEEETTTTT------------EEEEEEEC-CSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc------------EeEEEEec-CCCceeEEEECCCCCEEEEecCCceEE
Confidence 4444443 33455556788999999653210 11111111 12346666553 34555667888999
Q ss_pred EEeC
Q 020659 200 SWGA 203 (323)
Q Consensus 200 ~~G~ 203 (323)
.|-.
T Consensus 244 v~d~ 247 (369)
T 3zwl_B 244 LVDV 247 (369)
T ss_dssp EEET
T ss_pred EEEC
Confidence 9853
No 62
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=79.89 E-value=25 Score=29.25 Aligned_cols=148 Identities=11% Similarity=0.066 Sum_probs=77.4
Q ss_pred hcccccceeeeEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEE--eCccceEEEEcCCcEEEEe
Q 020659 19 KLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALA--CGGAHTLFLTETGCVYATG 96 (323)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~--~g~~~~~~lt~~g~v~~~G 96 (323)
+..++.......+++-..++.|..|-.... .....+.. ....|..++ ......+.-..|+.|..|-
T Consensus 16 V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~-----------~~~~~~~~-~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQ-----------VEVRSIQV-TETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTTT-----------EEEEEEEC-CSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred eEEEEECCCCCEEEEEcCCCcEEEEECCCC-----------ceeEEeec-cCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 344444455566666678899999965431 01111111 112344333 3334455556788888886
Q ss_pred CCCCccccCCCCCCceecceEecCCCCceEEEEcCCC--eEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEeccc
Q 020659 97 LNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYH--HSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECL 174 (323)
Q Consensus 97 ~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g~~--~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~ 174 (323)
.... .....+......|..++.... ..+.-..||.|..|-.... ......+...
T Consensus 84 ~~~~------------~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~------------~~~~~~~~~h 139 (304)
T 2ynn_A 84 YNTG------------EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN------------WALEQTFEGH 139 (304)
T ss_dssp TTTC------------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGT------------TEEEEEECCC
T ss_pred CCCC------------cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCC------------cchhhhhccc
Confidence 4321 122333334446777665443 3444567899999964210 0011111111
Q ss_pred CCceEEEEecC---CCeEEEEECCCCEEEEeC
Q 020659 175 SGIFTKQAALG---FEQSVAVTGGGKVLSWGA 203 (323)
Q Consensus 175 ~~~~i~~i~~g---~~~~~~l~~~g~v~~~G~ 203 (323)
...|..++.. ....+.-..||.|..|-.
T Consensus 140 -~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~ 170 (304)
T 2ynn_A 140 -EHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170 (304)
T ss_dssp -CSCEEEEEECTTCTTEEEEEETTSEEEEEET
T ss_pred -CCcEEEEEECCCCCCEEEEEeCCCeEEEEEC
Confidence 2246666654 235556688999999964
No 63
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=79.88 E-value=17 Score=27.25 Aligned_cols=107 Identities=13% Similarity=0.020 Sum_probs=62.1
Q ss_pred CCceEEEEeCc-cceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcC-CCeEEEEEcCCcEEEE
Q 020659 70 KHSLKALACGG-AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG-YHHSSAITVDGELYMW 147 (323)
Q Consensus 70 ~~~i~~v~~g~-~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g-~~~~~~lt~~g~v~~~ 147 (323)
.....++.|-. .+.+-+..||.|-.-.... +.........+ ...++.|.+- ..+.+++..+|+||+-
T Consensus 29 ~~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~~--------~~~s~lei~sv---~~G~V~L~g~~sg~yL~mn~~G~l~Gs 97 (142)
T 3p6j_A 29 GNGEVLLKSTETGQYLRINPDGTVDGTRDRS--------DTHIQFQISPE---GNGEVLLKSTETGQYLRINPDGTVDGT 97 (142)
T ss_dssp STTCEEEEETTTCCEEEECTTSBEEEECCTT--------CGGGCEEEEEE---ETTEEEEEETTTTEEEEECTTSBEEEE
T ss_pred cCcEEEEEEeCCCEEEEECCCCCEeeecCCC--------CCceEEEEEEc---cCCEEEEEEecCCEEEeECCCCCEeec
Confidence 45688999976 6778888999998643321 11111222222 2256777654 5788899999999975
Q ss_pred eCCCCCCCCCCCCCCcccccceEe-cccCCceEEEEecCCCeEEEEECCCCEEE
Q 020659 148 GKNSNGQLGLGKKAAKVIPIPTKV-ECLSGIFTKQAALGFEQSVAVTGGGKVLS 200 (323)
Q Consensus 148 G~n~~gqlg~~~~~~~~~~~p~~~-~~~~~~~i~~i~~g~~~~~~l~~~g~v~~ 200 (323)
-.. .+ ....-..+ ...-.+.|..+..|. .++++++|++|.
T Consensus 98 ~~~----------t~-ecsflEi~~en~y~v~i~g~~sg~--YLamnk~Grlyg 138 (142)
T 3p6j_A 98 RDR----------SD-THIQFQISPEGNGEVLLKSTETGQ--YLRINPDGTVDG 138 (142)
T ss_dssp CCT----------TC-GGGCEEEEECSTTCEEEEETTTCC--EEEECTTSBEEE
T ss_pred ccC----------CC-CceEEEEEeecCcEEEEEEecCCE--EEEECCCcCCcc
Confidence 221 11 11111111 122233344444444 899999999986
No 64
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=79.33 E-value=28 Score=29.43 Aligned_cols=123 Identities=7% Similarity=-0.055 Sum_probs=58.3
Q ss_pred CceEEEEeC--ccceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEe-cCCCCceEEEEcCC--CeEEEEEcCCcEE
Q 020659 71 HSLKALACG--GAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRI-SGLKKEVVQISTGY--HHSSAITVDGELY 145 (323)
Q Consensus 71 ~~i~~v~~g--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~-~~~~~~i~~i~~g~--~~~~~lt~~g~v~ 145 (323)
..|..++.. ....+.-..+|.|+.|-..... . ......+ ......|..++... ...+.-..+|.++
T Consensus 97 ~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~--------~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 167 (372)
T 1k8k_C 97 RAARCVRWAPNEKKFAVGSGSRVISICYFEQEN--------D-WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCR 167 (372)
T ss_dssp SCEEEEEECTTSSEEEEEETTSSEEEEEEETTT--------T-EEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CceeEEEECCCCCEEEEEeCCCEEEEEEecCCC--------c-ceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEE
Confidence 346666554 3345555678888887543211 0 0111122 22234677766543 3455556789999
Q ss_pred EEeCCCCCCCCCCCCCC---cccccceEeccc--CCceEEEEecC--CCeEEEEECCCCEEEEeC
Q 020659 146 MWGKNSNGQLGLGKKAA---KVIPIPTKVECL--SGIFTKQAALG--FEQSVAVTGGGKVLSWGA 203 (323)
Q Consensus 146 ~~G~n~~gqlg~~~~~~---~~~~~p~~~~~~--~~~~i~~i~~g--~~~~~~l~~~g~v~~~G~ 203 (323)
.|-..... +....... ........+..+ ....|..++.. ..+.+....+|.|..|-.
T Consensus 168 ~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 231 (372)
T 1k8k_C 168 IFSAYIKE-VEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA 231 (372)
T ss_dssp EEECCCTT-TSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred EEEccccc-ccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 99743211 10000000 000111111111 12246666553 335666678888888853
No 65
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=79.33 E-value=30 Score=29.79 Aligned_cols=218 Identities=10% Similarity=-0.047 Sum_probs=109.0
Q ss_pred EEEeCccceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecC-CCCceEEEEcC-----CCeEEEEEcCCcEEEEe
Q 020659 75 ALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISG-LKKEVVQISTG-----YHHSSAITVDGELYMWG 148 (323)
Q Consensus 75 ~v~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~-~~~~i~~i~~g-----~~~~~~lt~~g~v~~~G 148 (323)
.++.+..+.+++|+.|++|..-..+-...+...... +-...+.. ..++|+.+..- ....+++|++|.+-..-
T Consensus 45 ~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~--~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~ 122 (323)
T 1wp5_A 45 LEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQ--HIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTE 122 (323)
T ss_dssp EEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCE--EGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEE
T ss_pred EEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCc--ChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeE
Confidence 355667889999999999998765543333221111 11111111 12367765432 23578889999888776
Q ss_pred CCCCCCCCCCCCCCcccccceE-ecccCCceEEE--EecCCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccc
Q 020659 149 KNSNGQLGLGKKAAKVIPIPTK-VECLSGIFTKQ--AALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTS 225 (323)
Q Consensus 149 ~n~~gqlg~~~~~~~~~~~p~~-~~~~~~~~i~~--i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~ 225 (323)
..++..... ..... +...++.+++. +..+.++.+++|++|+++-+-.+..-.+|+....
T Consensus 123 l~e~~~~~r--------~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~G---------- 184 (323)
T 1wp5_A 123 LKHYKAQRY--------SKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAG---------- 184 (323)
T ss_dssp GGGGCCSCC--------SSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCC----------
T ss_pred HHHhhhccc--------cCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcC----------
Confidence 544321110 00000 11112223433 3346778999999999999887665555553311
Q ss_pred cccceeecccCCCcEEEEecC--CC-eeEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecC-CCCeeE--EEecCCe
Q 020659 226 EYTPRLIKELEGVKVKIAAAG--FL-HSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK-LPYSEE--VVCGGYH 299 (323)
Q Consensus 226 ~~~p~~i~~~~~~~i~~i~~g--~~-~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~-~~~i~~--v~~G~~~ 299 (323)
-+.+...++..|+.+..- .. ..+++|+.|.....-...+-..+.+.. -...+...+. ...++. +..+...
T Consensus 185 ---V~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~k-Gv~~~~~~~~~~~~l~~~~~v~~~~~ 260 (323)
T 1wp5_A 185 ---VKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKR-GVVILRELKANPHRISGFVVAQDSDT 260 (323)
T ss_dssp ---EECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSC-CEECSCCCSSSCCCEEEEEEECTTCE
T ss_pred ---EEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCC-CEECeeecCCCCceEEEEEEeCCCCe
Confidence 011112233456655431 12 466667777644433333211111111 0111111111 113332 2345778
Q ss_pred eEEEEcCCCEEEeeCCC
Q 020659 300 TCVLTSGGELYTWGSNE 316 (323)
Q Consensus 300 ~~~l~~~g~v~~~G~n~ 316 (323)
.++++++|.+.-.-.++
T Consensus 261 i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 261 IYLQTEKSFIETIKVGD 277 (323)
T ss_dssp EEEEETTSCEEEEEGGG
T ss_pred EEEEeCCCeEEEEEhhh
Confidence 88999999887654443
No 66
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=78.23 E-value=33 Score=29.69 Aligned_cols=191 Identities=9% Similarity=-0.058 Sum_probs=96.5
Q ss_pred CceEEEEeCcc--ceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcC--CCeEEEEEcCCcEEE
Q 020659 71 HSLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYM 146 (323)
Q Consensus 71 ~~i~~v~~g~~--~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~ 146 (323)
..|..++.... ..+.-..||.|..|-.... .....+......|..++.. ....+....+|.|..
T Consensus 140 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~i 207 (420)
T 3vl1_A 140 SEITKLKFFPSGEALISSSQDMQLKIWSVKDG------------SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRL 207 (420)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTC------------CCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred CccEEEEECCCCCEEEEEeCCCeEEEEeCCCC------------cCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence 45777766533 4455567899999965421 1223333344466666553 344555677899999
Q ss_pred EeCCCCCCCCCCCCCCcccccceEecc--cCCceEEEEe---------------------c--CCCeEEEEECCCCEEEE
Q 020659 147 WGKNSNGQLGLGKKAAKVIPIPTKVEC--LSGIFTKQAA---------------------L--GFEQSVAVTGGGKVLSW 201 (323)
Q Consensus 147 ~G~n~~gqlg~~~~~~~~~~~p~~~~~--~~~~~i~~i~---------------------~--g~~~~~~l~~~g~v~~~ 201 (323)
|-......+ ..+.. .....+..++ . ...+.++-..+|.|..|
T Consensus 208 wd~~~~~~~-------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~ 274 (420)
T 3vl1_A 208 WECGTGTTI-------------HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVH 274 (420)
T ss_dssp EETTTTEEE-------------EEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEE
T ss_pred eECCCCcee-------------EEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEE
Confidence 964321100 00000 0001122221 1 22345556778888888
Q ss_pred eCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCCC---eeEEEecCCcEEEEeCCCCCcCCcCCCCCc
Q 020659 202 GAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFL---HSACIDENGRVYIFGDRAVDKMLFQEGNHA 278 (323)
Q Consensus 202 G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~---~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~ 278 (323)
-.... ..+..+.......|..++.... ..+.-..||.|+.|-.....+
T Consensus 275 d~~~~--------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~--------- 325 (420)
T 3vl1_A 275 NVFSK--------------------EQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC--------- 325 (420)
T ss_dssp ETTTC--------------------CEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS---------
T ss_pred ECCCC--------------------ceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC---------
Confidence 53211 1111222212235777776555 455556889999997654211
Q ss_pred CCCeeec--CCCCeeEEEecCCeeEEE-EcCCCEEEeeCCC
Q 020659 279 RRPSLIS--KLPYSEEVVCGGYHTCVL-TSGGELYTWGSNE 316 (323)
Q Consensus 279 ~~p~~v~--~~~~i~~v~~G~~~~~~l-~~~g~v~~~G~n~ 316 (323)
....+. ....+..+...+...++. ..||+|..|-...
T Consensus 326 -~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 326 -PVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp -CSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECC
T ss_pred -chhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccC
Confidence 011121 122355555555544443 3588888886443
No 67
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=78.03 E-value=34 Score=29.72 Aligned_cols=124 Identities=12% Similarity=-0.007 Sum_probs=52.7
Q ss_pred eEEEEeCc---cceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcCC--CeEEEEEcCCcEEEE
Q 020659 73 LKALACGG---AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY--HHSSAITVDGELYMW 147 (323)
Q Consensus 73 i~~v~~g~---~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~~ 147 (323)
+..++... ...+.-..||.|..|-......+..- .............|..++... ...+.-..+|.|..|
T Consensus 209 v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~-----~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~w 283 (393)
T 1erj_A 209 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL-----DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 283 (393)
T ss_dssp EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEE-----C------CCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEee-----cccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 55555432 33445567888888854321110000 000000111233566666543 344455678999999
Q ss_pred eCCCCCCCCCCCCCCcccccceEecccCCceEEEEecCC--CeEEEEECCCCEEEEeC
Q 020659 148 GKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF--EQSVAVTGGGKVLSWGA 203 (323)
Q Consensus 148 G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~--~~~~~l~~~g~v~~~G~ 203 (323)
-............... ......+... ...|..++... .+.+.-..||.|+.|-.
T Consensus 284 d~~~~~~~~~~~~~~~-~~~~~~~~~h-~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~ 339 (393)
T 1erj_A 284 NLQNANNKSDSKTPNS-GTCEVTYIGH-KDFVLSVATTQNDEYILSGSKDRGVLFWDK 339 (393)
T ss_dssp EC----------------CEEEEEECC-SSCEEEEEECGGGCEEEEEETTSEEEEEET
T ss_pred ECCCCCCcccccCCCC-CcceEEEecc-cCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 6543221110000000 0000011111 12355555543 35555678899999953
No 68
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=77.84 E-value=42 Score=30.70 Aligned_cols=108 Identities=10% Similarity=0.015 Sum_probs=59.0
Q ss_pred ceEEEEeCcc---ceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCC---ceEEEEcCCC---eEEEEEcCC
Q 020659 72 SLKALACGGA---HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKK---EVVQISTGYH---HSSAITVDG 142 (323)
Q Consensus 72 ~i~~v~~g~~---~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~---~i~~i~~g~~---~~~~lt~~g 142 (323)
.|..++.... ..+.-..||.|..|-.... .....+..... .|..++...+ ..+....+|
T Consensus 162 ~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 229 (615)
T 1pgu_A 162 RINACHLKQSRPMRSMTVGDDGSVVFYQGPPF------------KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR 229 (615)
T ss_dssp CEEEEEECSSSSCEEEEEETTTEEEEEETTTB------------EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTC
T ss_pred cEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc------------ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCC
Confidence 4555555443 4555667888998853221 12222333333 5777766543 455567899
Q ss_pred cEEEEeCCCCCCCCCCCCCCcccccceEecc---cCCceEEEEec-CCCeEEEEECCCCEEEEeCC
Q 020659 143 ELYMWGKNSNGQLGLGKKAAKVIPIPTKVEC---LSGIFTKQAAL-GFEQSVAVTGGGKVLSWGAG 204 (323)
Q Consensus 143 ~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~---~~~~~i~~i~~-g~~~~~~l~~~g~v~~~G~n 204 (323)
.|+.|-..... ....+.. .....|..++. ...+.+....+|.|..|-..
T Consensus 230 ~i~vwd~~~~~-------------~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~ 282 (615)
T 1pgu_A 230 KISCFDGKSGE-------------FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVT 282 (615)
T ss_dssp CEEEEETTTCC-------------EEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETT
T ss_pred eEEEEECCCCC-------------EeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECC
Confidence 99999643210 1111100 11224555555 44466666788999999643
No 69
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=77.63 E-value=30 Score=28.96 Aligned_cols=181 Identities=12% Similarity=0.035 Sum_probs=96.2
Q ss_pred eEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeCc--cceEEEEcCCcEEEEeCCCCccccCC
Q 020659 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGG--AHTLFLTETGCVYATGLNDFGQLGIS 106 (323)
Q Consensus 29 ~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~ 106 (323)
.++++-..++.|.+|-....++ .....+.. ....|..++... ...+.-..||.|..|-....
T Consensus 55 ~~l~~~~~dg~i~iw~~~~~~~---------~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~------ 118 (368)
T 3mmy_A 55 NFLIAGSWANDVRCWEVQDSGQ---------TIPKAQQM-HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSN------ 118 (368)
T ss_dssp EEEEEEETTSEEEEEEECTTSC---------EEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT------
T ss_pred eEEEEECCCCcEEEEEcCCCCc---------eeEEEecc-ccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCC------
Confidence 5566666788888887654221 11111111 123466666543 34555677899999965422
Q ss_pred CCCCceecceEecCCCCceEEEEc--CCC--eEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEE
Q 020659 107 ENIGYSLEPLRISGLKKEVVQIST--GYH--HSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQA 182 (323)
Q Consensus 107 ~~~~~~~~p~~~~~~~~~i~~i~~--g~~--~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i 182 (323)
.+..+......|..++. ..+ ..+....+|.|+.|-..... ....+... ..+..+
T Consensus 119 -------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-------------~~~~~~~~--~~~~~~ 176 (368)
T 3mmy_A 119 -------QAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN-------------PMMVLQLP--ERCYCA 176 (368)
T ss_dssp -------EEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS-------------CSEEEECS--SCEEEE
T ss_pred -------CceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc-------------EEEEEecC--CCceEE
Confidence 12222334447777764 333 34445678999999543210 11112211 235566
Q ss_pred ecCCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecc--cCCCcEEEEecCCCe----eEEEecC
Q 020659 183 ALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKE--LEGVKVKIAAAGFLH----SACIDEN 256 (323)
Q Consensus 183 ~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~--~~~~~i~~i~~g~~~----~~~lt~~ 256 (323)
..-....++.+.++.+..|-...... ....+.. .....+..+...... .++-..+
T Consensus 177 ~~~~~~~~~~~~~~~i~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 237 (368)
T 3mmy_A 177 DVIYPMAVVATAERGLIVYQLENQPS-------------------EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIE 237 (368)
T ss_dssp EEETTEEEEEEGGGCEEEEECSSSCE-------------------EEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETT
T ss_pred EecCCeeEEEeCCCcEEEEEeccccc-------------------hhhhccccccCCCceEEEcccCCCCCCeEEEecCC
Confidence 66667788888899999996432110 0011111 111133333333333 6667789
Q ss_pred CcEEEEeCCC
Q 020659 257 GRVYIFGDRA 266 (323)
Q Consensus 257 g~ly~wG~n~ 266 (323)
|.+..|-.+.
T Consensus 238 g~i~i~~~~~ 247 (368)
T 3mmy_A 238 GRVAIHYINP 247 (368)
T ss_dssp SEEEEEESSC
T ss_pred CcEEEEecCC
Confidence 9999998655
No 70
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=77.22 E-value=30 Score=28.67 Aligned_cols=161 Identities=12% Similarity=0.042 Sum_probs=74.8
Q ss_pred ceEEEEcC-CCeEEEEEcCCc-EEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEecCCCeEEEEECCCC-EEE
Q 020659 124 EVVQISTG-YHHSSAITVDGE-LYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGK-VLS 200 (323)
Q Consensus 124 ~i~~i~~g-~~~~~~lt~~g~-v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~~~~l~~~g~-v~~ 200 (323)
++.-..++ ....++++.+|+ +|.++.... + ......|..+....+-.+.-.........+++.+|+ +|.
T Consensus 89 ~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~--~------~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w~ 160 (276)
T 3no2_A 89 NALVAWCGHPSTILEVNMKGEVLSKTEFETG--I------ERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNS 160 (276)
T ss_dssp CEEEEEESTTEEEEEECTTSCEEEEEEECCS--C------SSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCEEEE
T ss_pred CEEEEecCCCCEEEEEeCCCCEEEEEeccCC--C------CcccccccCceECCCCCEEEEecCCCEEEEECCCCCEEEE
Confidence 45444455 555666777776 566654211 0 000111222222223334434444556666777775 455
Q ss_pred EeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCCCeeEEEecC-Cc-EEEEeCCCCCcCCcCCCCCc
Q 020659 201 WGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDEN-GR-VYIFGDRAVDKMLFQEGNHA 278 (323)
Q Consensus 201 ~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~-g~-ly~wG~n~~gqlg~~~~~~~ 278 (323)
++.. ..|.-+..+.+.++.-........++++.+ |+ +|.++.+... + ...
T Consensus 161 ~~~~----------------------~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~----~--~~l 212 (276)
T 3no2_A 161 VKLS----------------------GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIE----G--VQL 212 (276)
T ss_dssp EECS----------------------SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSB----S--CCC
T ss_pred EECC----------------------CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCC----C--ccc
Confidence 5532 012222223333455444444456777776 65 4566643210 0 011
Q ss_pred CCCeeecCCC-CeeEEEe--c---------CCeeEEEEcCCCEEEeeCCCCCccC
Q 020659 279 RRPSLISKLP-YSEEVVC--G---------GYHTCVLTSGGELYTWGSNENGCLG 321 (323)
Q Consensus 279 ~~p~~v~~~~-~i~~v~~--G---------~~~~~~l~~~g~v~~~G~n~~gqLG 321 (323)
..|.-++... .-+-|+. | ..+.+.++.+|+| .|-.++...+|
T Consensus 213 ~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~-~W~~~~~~~~~ 266 (276)
T 3no2_A 213 FFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKV-VWQLNDKVKFG 266 (276)
T ss_dssp SEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBE-EEEECCTTTSC
T ss_pred cccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCE-EEEecCccccc
Confidence 1223222222 2333444 2 3357888889986 56555555444
No 71
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=76.97 E-value=36 Score=29.45 Aligned_cols=139 Identities=11% Similarity=0.043 Sum_probs=70.8
Q ss_pred eeeeEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEE---EeCccceEEEEcCCcEEEEeCCCCcc
Q 020659 26 ICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKAL---ACGGAHTLFLTETGCVYATGLNDFGQ 102 (323)
Q Consensus 26 ~~~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v---~~g~~~~~~lt~~g~v~~~G~n~~gq 102 (323)
.....+++...++.++.|-....-..- .+....+..+ +......+.-..+|.|..|-....
T Consensus 66 ~~g~~l~~~~~d~~v~i~d~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-- 129 (420)
T 3vl1_A 66 KVGSHLYKARLDGHDFLFNTIIRDGSK--------------MLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN-- 129 (420)
T ss_dssp EEETTEEEEEETTEEEEEECCSEETTT--------------TSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSC--
T ss_pred ecCCeEEEEEcCCcEEEEEecccceee--------------EEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCc--
Confidence 334444555578888888754321111 1111122222 223334455567889999853211
Q ss_pred ccCCCCCCceecceEecCCCCceEEEEcCC--CeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEE
Q 020659 103 LGISENIGYSLEPLRISGLKKEVVQISTGY--HHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTK 180 (323)
Q Consensus 103 lg~~~~~~~~~~p~~~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~ 180 (323)
.....+......|..++... ...+.-..+|.|+.|-..... ....+... ...|.
T Consensus 130 ----------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~-------------~~~~~~~h-~~~v~ 185 (420)
T 3vl1_A 130 ----------LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS-------------NPRTLIGH-RATVT 185 (420)
T ss_dssp ----------EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-------------CCEEEECC-SSCEE
T ss_pred ----------ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc-------------CceEEcCC-CCcEE
Confidence 11122223344777776643 345556778999999654211 11122211 12355
Q ss_pred EEec--CCCeEEEEECCCCEEEEeCC
Q 020659 181 QAAL--GFEQSVAVTGGGKVLSWGAG 204 (323)
Q Consensus 181 ~i~~--g~~~~~~l~~~g~v~~~G~n 204 (323)
.++. .....+....+|.|..|-..
T Consensus 186 ~~~~~~~~~~l~s~~~d~~v~iwd~~ 211 (420)
T 3vl1_A 186 DIAIIDRGRNVLSASLDGTIRLWECG 211 (420)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEETT
T ss_pred EEEEcCCCCEEEEEcCCCcEEEeECC
Confidence 5544 34456666788999999643
No 72
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=76.83 E-value=40 Score=29.87 Aligned_cols=98 Identities=9% Similarity=0.002 Sum_probs=59.8
Q ss_pred EEEEecCCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCCCeeEEEecCCc
Q 020659 179 TKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGR 258 (323)
Q Consensus 179 i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~ 258 (323)
|.++++ ....+++.+++.|..|=.....+ ...+.... ..+.++.+-....+++++||.
T Consensus 90 V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~--------------------~~~~~~~~-~~v~~i~~~~p~~av~~~dG~ 147 (388)
T 1xip_A 90 VIFVCF-HGDQVLVSTRNALYSLDLEELSE--------------------FRTVTSFE-KPVFQLKNVNNTLVILNSVND 147 (388)
T ss_dssp EEEEEE-ETTEEEEEESSEEEEEESSSTTC--------------------EEEEEECS-SCEEEEEECSSEEEEEETTSE
T ss_pred eeEEEE-CCCEEEEEcCCcEEEEEchhhhc--------------------cCccceee-cceeeEEecCCCEEEEECCCC
Confidence 888888 66777777888999986433211 11111111 235566666656888899999
Q ss_pred EEEEeCCCCCcCCcCCCCCcCCCeeecCCCCeeEEEecCCeeEEEEcCCCEEEe
Q 020659 259 VYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTW 312 (323)
Q Consensus 259 ly~wG~n~~gqlg~~~~~~~~~p~~v~~~~~i~~v~~G~~~~~~l~~~g~v~~~ 312 (323)
|+.|-.... ++ . .+ ...|..++-...-.++...||++..|
T Consensus 148 L~v~dl~~~-~~-----~------~~--~~~Vs~v~WSpkG~~vg~~dg~i~~~ 187 (388)
T 1xip_A 148 LSALDLRTK-ST-----K------QL--AQNVTSFDVTNSQLAVLLKDRSFQSF 187 (388)
T ss_dssp EEEEETTTC-CE-----E------EE--EESEEEEEECSSEEEEEETTSCEEEE
T ss_pred EEEEEccCC-cc-----c------cc--cCCceEEEEcCCceEEEEcCCcEEEE
Confidence 999976531 11 0 11 23566666666555666677776666
No 73
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=76.78 E-value=34 Score=29.11 Aligned_cols=217 Identities=13% Similarity=0.037 Sum_probs=110.1
Q ss_pred EEEeCccceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEc-----CCCeEEEEEcCCcEEEEeC
Q 020659 75 ALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIST-----GYHHSSAITVDGELYMWGK 149 (323)
Q Consensus 75 ~v~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~-----g~~~~~~lt~~g~v~~~G~ 149 (323)
.++.+..+.+++|+.|++|..-..+-...+..........-..+. ..++|+.+.. .....+++|++|.+--.-.
T Consensus 48 ~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l 126 (307)
T 1zi0_A 48 LVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVL 126 (307)
T ss_dssp EEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEG
T ss_pred EEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEH
Confidence 345567789999999999998765543333221111000111111 2336776644 2345788899998877754
Q ss_pred CCCCCCCCCCCCCcccccceE-ecccCCceEEEE--ecCCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCcccccccccc
Q 020659 150 NSNGQLGLGKKAAKVIPIPTK-VECLSGIFTKQA--ALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSE 226 (323)
Q Consensus 150 n~~gqlg~~~~~~~~~~~p~~-~~~~~~~~i~~i--~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~ 226 (323)
.++..... .... +...++.+++.+ ..+.++.+++|++|+++-+-....-.+|+....
T Consensus 127 ~e~~~~~r---------~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~G----------- 186 (307)
T 1zi0_A 127 TEFNRLRT---------AGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG----------- 186 (307)
T ss_dssp GGGTTCCT---------TCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCC-----------
T ss_pred HHhhcccc---------CCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCC-----------
Confidence 43321110 0101 111122334443 345668899999999999876655555543321
Q ss_pred ccceeecccCCCcEEEEecCC--CeeEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecCCCCeeEEEe--cCCeeEE
Q 020659 227 YTPRLIKELEGVKVKIAAAGF--LHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVC--GGYHTCV 302 (323)
Q Consensus 227 ~~p~~i~~~~~~~i~~i~~g~--~~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~~~~i~~v~~--G~~~~~~ 302 (323)
...+...+++.|+.+..-. ...+++|+.|..--.-...+-.-+.+... ...+......+.++.+.. .....++
T Consensus 187 --v~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG-~~~~~~~~~~~~lv~~~~v~~~~~l~~ 263 (307)
T 1zi0_A 187 --VRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG-VISIKVTERNGLVVGAVQVDDCDQIMM 263 (307)
T ss_dssp --EECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCC-EESSCCCTTTCSEEEEEEECTTCEEEE
T ss_pred --eEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCC-EEeeEecCCCCeEEEEEEeCCCceEEE
Confidence 1122223445677765432 34566777776544433222111111000 001111111233444333 5667889
Q ss_pred EEcCCCEEEeeCC
Q 020659 303 LTSGGELYTWGSN 315 (323)
Q Consensus 303 l~~~g~v~~~G~n 315 (323)
++++|.+.-.-.+
T Consensus 264 ~t~~g~~ir~~~~ 276 (307)
T 1zi0_A 264 ITDAGTLVRTRVS 276 (307)
T ss_dssp EESSCCEEEEEGG
T ss_pred EcCCCcEEEEecc
Confidence 9999988765433
No 74
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=76.54 E-value=35 Score=29.11 Aligned_cols=213 Identities=14% Similarity=0.096 Sum_probs=107.3
Q ss_pred ccceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEE--EEcCCCeEEEEEcCCcEEEEeCCCCCCCCC
Q 020659 80 GAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQ--ISTGYHHSSAITVDGELYMWGKNSNGQLGL 157 (323)
Q Consensus 80 ~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~--i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~ 157 (323)
....+++|.+|.+--.-...+.....+.. -..-..+. ..+.++. ++.+.++.+++|+.|++|..-.......+.
T Consensus 8 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~---g~~~~~lk-e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 8 ENIVVMLTKKGFLKRLSQNEYKLQGTGGK---GLSSFDLN-DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp CEEEEEEETTCBEEEEEGGGSCBCCSSCC---CEECCCCC-TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred CCEEEEEeCCCEEEEeEHHHhhccccCCC---CceecccC-CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence 34577889999886554333321111000 00001111 1123333 455778899999999999997654333332
Q ss_pred CCCCCcccccceEecccCCceEEEEecC-----CCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceee
Q 020659 158 GKKAAKVIPIPTKVECLSGIFTKQAALG-----FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLI 232 (323)
Q Consensus 158 ~~~~~~~~~~p~~~~~~~~~~i~~i~~g-----~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i 232 (323)
...- .+....+...++.+|+.+... ..+.+++|++|.++-.-...+-.. +.. . . ..+
T Consensus 84 ~~~G---~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~-r~~-----------G--~-~~i 145 (312)
T 1suu_A 84 ASKG---QNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAV-KSR-----------G--V-IVI 145 (312)
T ss_dssp -------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----------------C--E-ECB
T ss_pred cCCC---cChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhcc-CCC-----------c--E-EEE
Confidence 2111 112222333345567777654 456888999999998765443110 000 0 0 001
Q ss_pred cccCCCcEEEEec--CCCeeEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecCCCCeeEEEe--cCCeeEEEEcCCC
Q 020659 233 KELEGVKVKIAAA--GFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVC--GGYHTCVLTSGGE 308 (323)
Q Consensus 233 ~~~~~~~i~~i~~--g~~~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~~~~i~~v~~--G~~~~~~l~~~g~ 308 (323)
...++.+++.+.. +..+.+++|++|.+..+-..+.-..|....-.. -..+..-+.++.+.. ...+.++++++|.
T Consensus 146 ~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~--~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~ 223 (312)
T 1suu_A 146 KLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVC--GMKLKEGDLFVKVLSVKENPYLLIVSENGY 223 (312)
T ss_dssp CCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEE--CCCCCTTCCEEEEEECTTCSEEEEEETTSE
T ss_pred ecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeE--eEEeCCCCEEEEEEEECCCCeEEEEECCCc
Confidence 1112334554443 456788999999999887665434433211110 111222334554433 3456778888887
Q ss_pred EEEeeCCC
Q 020659 309 LYTWGSNE 316 (323)
Q Consensus 309 v~~~G~n~ 316 (323)
+...-.++
T Consensus 224 ~kr~~~~e 231 (312)
T 1suu_A 224 GKRLNMSK 231 (312)
T ss_dssp EEEEEGGG
T ss_pred eEEEEHHH
Confidence 66554433
No 75
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=75.77 E-value=38 Score=29.14 Aligned_cols=199 Identities=9% Similarity=0.021 Sum_probs=95.7
Q ss_pred ceEEEEeC---ccceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcCCC---eEEEEEcCCcEE
Q 020659 72 SLKALACG---GAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYH---HSSAITVDGELY 145 (323)
Q Consensus 72 ~i~~v~~g---~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g~~---~~~~lt~~g~v~ 145 (323)
.|..++.. ....+.-..||.|+.|-.......... .....+.........|..++.... ..+.-..+|.|.
T Consensus 115 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~ 191 (416)
T 2pm9_A 115 SVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN---YTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFAS 191 (416)
T ss_dssp CCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTT---CCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEE
T ss_pred ceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccc---ccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEE
Confidence 45566554 344455567888998865432100000 000111111222335666655433 344446789999
Q ss_pred EEeCCCCCCCCCCCCCCcccccceEecccC-----CceEEEEecCCC---eEEEEECCC---CEEEEeCCCCCCcCCCCC
Q 020659 146 MWGKNSNGQLGLGKKAAKVIPIPTKVECLS-----GIFTKQAALGFE---QSVAVTGGG---KVLSWGAGGSGRLGHGQE 214 (323)
Q Consensus 146 ~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~-----~~~i~~i~~g~~---~~~~l~~~g---~v~~~G~n~~gqlG~~~~ 214 (323)
.|-.... .....+.... ...|..++...+ ..+.-..++ .|+.|-.....
T Consensus 192 iwd~~~~-------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~------- 251 (416)
T 2pm9_A 192 IWDLKAK-------------KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN------- 251 (416)
T ss_dssp EEETTTT-------------EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT-------
T ss_pred EEECCCC-------------CcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC-------
Confidence 9965321 1111111111 234666655433 444556666 78888543211
Q ss_pred CCccccccccccccceeecc-cCCCcEEEEecC---CCeeEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecC-CCC
Q 020659 215 SSILGFLRSTSEYTPRLIKE-LEGVKVKIAAAG---FLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK-LPY 289 (323)
Q Consensus 215 ~~~~~~~~~~~~~~p~~i~~-~~~~~i~~i~~g---~~~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~-~~~ 289 (323)
.|..... .....|..++.. ....+.-..||.|+.|-......+ ..+.. ...
T Consensus 252 -------------~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~-----------~~~~~~~~~ 307 (416)
T 2pm9_A 252 -------------TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQL-----------SQFPARGNW 307 (416)
T ss_dssp -------------SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEE-----------EEEECSSSC
T ss_pred -------------CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccc-----------eeecCCCCc
Confidence 1111111 112356666653 345556677899999975432111 11211 223
Q ss_pred eeEEEecCC---eeEEEEcCCCEEEeeCCCC
Q 020659 290 SEEVVCGGY---HTCVLTSGGELYTWGSNEN 317 (323)
Q Consensus 290 i~~v~~G~~---~~~~l~~~g~v~~~G~n~~ 317 (323)
|..++.... ..+.-..||+|..|-.+..
T Consensus 308 v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 308 CFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp CCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred eEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 556665543 3333446889999876543
No 76
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=75.75 E-value=37 Score=29.04 Aligned_cols=219 Identities=9% Similarity=0.056 Sum_probs=106.7
Q ss_pred EecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeCcc--ceEEEEcCCcEEEEeCCCCccccCCCC
Q 020659 31 ISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISEN 108 (323)
Q Consensus 31 ~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g~~--~~~~lt~~g~v~~~G~n~~gqlg~~~~ 108 (323)
+++-..++.|.+|-...... .........--...|..|+...+ +.+.-..||.|..|-....
T Consensus 96 l~~~s~dg~v~lWd~~~~~~--------~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~-------- 159 (344)
T 4gqb_B 96 ILVASDSGAVELWELDENET--------LIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ-------- 159 (344)
T ss_dssp EEEEETTSEEEEEEECTTSS--------CEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--------
T ss_pred EEEEECCCEEEEEeccCCCc--------eeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC--------
Confidence 44445788888886543211 11111111011234666665433 3344457888888854321
Q ss_pred CCceecceEecCCCCceEEEEcCCC---eEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEec-ccCCceEEEEec
Q 020659 109 IGYSLEPLRISGLKKEVVQISTGYH---HSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVE-CLSGIFTKQAAL 184 (323)
Q Consensus 109 ~~~~~~p~~~~~~~~~i~~i~~g~~---~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~-~~~~~~i~~i~~ 184 (323)
.....+......|..++.... ..+.-..||.|..|-...... ...+. ......+..++.
T Consensus 160 ----~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~-------------~~~~~~~~~~~~~~~~~~ 222 (344)
T 4gqb_B 160 ----VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP-------------ASQIGCSAPGYLPTSLAW 222 (344)
T ss_dssp ----EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC-------------EEECC----CCCEEEEEE
T ss_pred ----cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccce-------------eeeeecceeeccceeeee
Confidence 112223333447777766433 233456789999995421100 00111 111223555544
Q ss_pred C---CCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCCC---eeEEEecCCc
Q 020659 185 G---FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFL---HSACIDENGR 258 (323)
Q Consensus 185 g---~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~---~~~~lt~~g~ 258 (323)
. ....+.-..||.|..|-.... + ....+.. ....|..++...+ ..+.-..||.
T Consensus 223 ~p~~~~~l~sg~~dg~v~~wd~~~~-~-------------------~~~~~~~-h~~~v~~v~fsp~g~~~lasgs~D~~ 281 (344)
T 4gqb_B 223 HPQQSEVFVFGDENGTVSLVDTKST-S-------------------CVLSSAV-HSQCVTGLVFSPHSVPFLASLSEDCS 281 (344)
T ss_dssp CSSCTTEEEEEETTSEEEEEESCC----------------------CCEEEEC-CSSCEEEEEECSSSSCCEEEEETTSC
T ss_pred cCCCCcceEEeccCCcEEEEECCCC-c-------------------EEEEEcC-CCCCEEEEEEccCCCeEEEEEeCCCe
Confidence 3 223344578899999943211 0 1111111 1235777776543 2334568999
Q ss_pred EEEEeCCCCCcCCcCCCCCcCCCeeecC-CCCeeEEEecCC-eeEE--EEcCCCEEEeeCC
Q 020659 259 VYIFGDRAVDKMLFQEGNHARRPSLISK-LPYSEEVVCGGY-HTCV--LTSGGELYTWGSN 315 (323)
Q Consensus 259 ly~wG~n~~gqlg~~~~~~~~~p~~v~~-~~~i~~v~~G~~-~~~~--l~~~g~v~~~G~n 315 (323)
|+.|-... +++ ..+.. ...|..|+.... ..++ -..||+|..|-..
T Consensus 282 i~vwd~~~-~~~-----------~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 282 LAVLDSSL-SEL-----------FRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp EEEECTTC-CEE-----------EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred EEEEECCC-CcE-----------EEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence 99995432 121 11222 224777876532 2333 3469999999643
No 77
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=75.28 E-value=39 Score=29.05 Aligned_cols=200 Identities=9% Similarity=-0.006 Sum_probs=94.3
Q ss_pred ceEEEEeCcc--ceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcC---CCeEEEEEcCCcEEE
Q 020659 72 SLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG---YHHSSAITVDGELYM 146 (323)
Q Consensus 72 ~i~~v~~g~~--~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g---~~~~~~lt~~g~v~~ 146 (323)
.|..++-..+ ..+.-..||.|..|-..... ........+......|..++.. ....+.-..+|.|+.
T Consensus 69 ~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~--------~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~i 140 (416)
T 2pm9_A 69 KFNDLDWSHNNKIIAGALDNGSLELYSTNEAN--------NAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFI 140 (416)
T ss_dssp CEEEEEECSSSSCEEEEESSSCEEEECCSSTT--------SCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEB
T ss_pred ceEEEEECCCCCeEEEEccCCeEEEeeccccc--------ccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEE
Confidence 4666655433 33444578999999654310 0001222233333466666553 445555667899999
Q ss_pred EeCCCCCCCCCCCCCCcccccceEec--ccCCceEEEEecCC---CeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccc
Q 020659 147 WGKNSNGQLGLGKKAAKVIPIPTKVE--CLSGIFTKQAALGF---EQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFL 221 (323)
Q Consensus 147 ~G~n~~gqlg~~~~~~~~~~~p~~~~--~~~~~~i~~i~~g~---~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~ 221 (323)
|-......... ...+..+. ......|..++... ...+.-..+|.|..|-....
T Consensus 141 wd~~~~~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~--------------- 198 (416)
T 2pm9_A 141 WDMNKCTESPS-------NYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK--------------- 198 (416)
T ss_dssp CBTTTTSSCTT-------TCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT---------------
T ss_pred EECCCCccccc-------cccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC---------------
Confidence 96543210000 00011110 00112355555443 34444567889999964321
Q ss_pred cccccccceeecccC-----CCcEEEEecCCC---eeEEEecCC---cEEEEeCCCCCcCCcCCCCCcCCCeeec--CCC
Q 020659 222 RSTSEYTPRLIKELE-----GVKVKIAAAGFL---HSACIDENG---RVYIFGDRAVDKMLFQEGNHARRPSLIS--KLP 288 (323)
Q Consensus 222 ~~~~~~~p~~i~~~~-----~~~i~~i~~g~~---~~~~lt~~g---~ly~wG~n~~gqlg~~~~~~~~~p~~v~--~~~ 288 (323)
.....+.... ...|..++.... ..+.-..++ .|+.|-.....+. ...+. ...
T Consensus 199 -----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~----------~~~~~~~~~~ 263 (416)
T 2pm9_A 199 -----KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP----------LQTLNQGHQK 263 (416)
T ss_dssp -----EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC----------SBCCCSCCSS
T ss_pred -----CcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC----------cEEeecCccC
Confidence 0011111110 235666666543 334445566 8888875542111 01111 122
Q ss_pred CeeEEEec---CCeeEEEEcCCCEEEeeCCC
Q 020659 289 YSEEVVCG---GYHTCVLTSGGELYTWGSNE 316 (323)
Q Consensus 289 ~i~~v~~G---~~~~~~l~~~g~v~~~G~n~ 316 (323)
.|..++.. ....+.-..||+|..|-..+
T Consensus 264 ~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~ 294 (416)
T 2pm9_A 264 GILSLDWCHQDEHLLLSSGRDNTVLLWNPES 294 (416)
T ss_dssp CEEEEEECSSCSSCEEEEESSSEEEEECSSS
T ss_pred ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC
Confidence 46666653 34444555688888886443
No 78
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=72.65 E-value=42 Score=28.21 Aligned_cols=137 Identities=10% Similarity=0.029 Sum_probs=64.9
Q ss_pred EEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeCccceEEE--EcCCcEEEEeCCCCccccCCC
Q 020659 30 WISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFL--TETGCVYATGLNDFGQLGISE 107 (323)
Q Consensus 30 ~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g~~~~~~l--t~~g~v~~~G~n~~gqlg~~~ 107 (323)
.+++-..|+.|.+|-.... ...+.....--...|..++......+++ ..|+.|..|-.....
T Consensus 50 ~l~tgs~D~~v~vW~~~~~----------~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~------ 113 (321)
T 3ow8_A 50 TVVTGSLDDLVKVWKWRDE----------RLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGK------ 113 (321)
T ss_dssp EEEEEETTSCEEEEEEETT----------EEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE------
T ss_pred EEEEEcCCCCEEEEECCCC----------CeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCC------
Confidence 5566667888888865321 1111100011123466666555444433 458889999643221
Q ss_pred CCCceecceEecCCCCce--EEEEcCCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEecC
Q 020659 108 NIGYSLEPLRISGLKKEV--VQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG 185 (323)
Q Consensus 108 ~~~~~~~p~~~~~~~~~i--~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g 185 (323)
....+......+ ..++.-....+.-..+|.+..|...... ....+.. ....|..++..
T Consensus 114 ------~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~-------------~~~~~~~-~~~~v~~~~~s 173 (321)
T 3ow8_A 114 ------QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK-------------KEYSLDT-RGKFILSIAYS 173 (321)
T ss_dssp ------EEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS-------------EEEEEEC-SSSCEEEEEEC
T ss_pred ------EEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc-------------eeEEecC-CCceEEEEEEC
Confidence 111122112222 2333334444555678888888653210 0111111 12235554443
Q ss_pred --CCeEEEEECCCCEEEEe
Q 020659 186 --FEQSVAVTGGGKVLSWG 202 (323)
Q Consensus 186 --~~~~~~l~~~g~v~~~G 202 (323)
....+.-..+|.|..|-
T Consensus 174 pdg~~lasg~~dg~i~iwd 192 (321)
T 3ow8_A 174 PDGKYLASGAIDGIINIFD 192 (321)
T ss_dssp TTSSEEEEEETTSCEEEEE
T ss_pred CCCCEEEEEcCCCeEEEEE
Confidence 33455557788888885
No 79
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=72.65 E-value=50 Score=29.03 Aligned_cols=128 Identities=13% Similarity=0.076 Sum_probs=69.7
Q ss_pred EEeCccceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcC-----CCeEEEEEcCCcEEEEeCC
Q 020659 76 LACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG-----YHHSSAITVDGELYMWGKN 150 (323)
Q Consensus 76 v~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g-----~~~~~~lt~~g~v~~~G~n 150 (323)
++.+..+.+++|+.|++|.+-...-...+.............+. ..++|+.+..- ..+.+++|++|.+-..-..
T Consensus 53 ~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~ 131 (370)
T 3l6v_A 53 LVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLS 131 (370)
T ss_dssp EECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGG
T ss_pred EecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHH
Confidence 34455668889999999988765433333221111001111111 23477776553 3468889999988877654
Q ss_pred CCCCCCCCCCCCcccccceEecccCCceEEE--EecCCCeEEEEECCCCEEEEeCCCCCCcCCC
Q 020659 151 SNGQLGLGKKAAKVIPIPTKVECLSGIFTKQ--AALGFEQSVAVTGGGKVLSWGAGGSGRLGHG 212 (323)
Q Consensus 151 ~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~--i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~ 212 (323)
.+.... ... .....+. ++.+++. +..+..+.+++|++|++.-+-...--.+|+.
T Consensus 132 e~~~~~----~~G--~~ai~L~--~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~ 187 (370)
T 3l6v_A 132 EFAFRL----ARG--KIAINLD--EGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRT 187 (370)
T ss_dssp GGCSCC----TTC--EESSCCC--TTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTT
T ss_pred Hhhccc----CCc--eEEEEeC--CCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCC
Confidence 443211 000 0000111 1223333 3346678999999999988866555555554
No 80
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=72.54 E-value=71 Score=30.76 Aligned_cols=197 Identities=9% Similarity=0.041 Sum_probs=100.9
Q ss_pred ceEEEEeCc--cceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcC----CCeEEEEEcCCcEE
Q 020659 72 SLKALACGG--AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG----YHHSSAITVDGELY 145 (323)
Q Consensus 72 ~i~~v~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g----~~~~~~lt~~g~v~ 145 (323)
.|..++... ...+.-..||.|..|-... ........+......|..++.. ....+....+|.|+
T Consensus 11 ~V~~l~~s~dg~~latg~~dg~I~vwd~~~----------~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSDKTIKIFEVEG----------ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp CEEEECCCSSSCCEEEEETTTEEEEEEEET----------TEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred eeEEEEECCCCCeEEEEECCCcEEEEecCC----------CCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 355555432 2344445789898885421 0112223333344478777764 44566667899999
Q ss_pred EEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEecC----CCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccc
Q 020659 146 MWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG----FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFL 221 (323)
Q Consensus 146 ~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g----~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~ 221 (323)
.|-.... .......... ....|..++.. ....+..+.+|.|..|-......
T Consensus 81 vwd~~~~-----------~~~~~~~~~~-h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~------------- 135 (753)
T 3jro_A 81 IWKEENG-----------RWSQIAVHAV-HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT------------- 135 (753)
T ss_dssp EEEEETT-----------EEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC-------------
T ss_pred EEECCCC-----------cccccccccC-CCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC-------------
Confidence 9964310 0001111111 22357776665 34667778899999996432111
Q ss_pred cccccccceeecccCCCcEEEEecCC---------------CeeEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecC
Q 020659 222 RSTSEYTPRLIKELEGVKVKIAAAGF---------------LHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK 286 (323)
Q Consensus 222 ~~~~~~~p~~i~~~~~~~i~~i~~g~---------------~~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~ 286 (323)
..+..+.. ....|..++... ...+.-..||.|+.|-.....+. ......+..
T Consensus 136 -----~~~~~~~~-~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~-------~~~~~~~~~ 202 (753)
T 3jro_A 136 -----TSPIIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-------YVLESTLEG 202 (753)
T ss_dssp -----CCCEEEEC-CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTE-------EEEEEEECC
T ss_pred -----cceeEeec-CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCccc-------ceeeeeecC
Confidence 01111111 122455555443 34555567899999965431110 000111121
Q ss_pred -CCCeeEEEecCC-----eeEEEEcCCCEEEeeCCC
Q 020659 287 -LPYSEEVVCGGY-----HTCVLTSGGELYTWGSNE 316 (323)
Q Consensus 287 -~~~i~~v~~G~~-----~~~~l~~~g~v~~~G~n~ 316 (323)
...|..++.... ..+.-..||+|..|-.+.
T Consensus 203 h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 203 HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp CSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred CCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 224667776544 334455789999986544
No 81
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=71.73 E-value=35 Score=28.29 Aligned_cols=16 Identities=31% Similarity=0.461 Sum_probs=11.2
Q ss_pred CeEEEEEcCCcEEEEeC
Q 020659 133 HHSSAITVDGELYMWGK 149 (323)
Q Consensus 133 ~~~~~lt~~g~v~~~G~ 149 (323)
.|++++ -++++|.+|-
T Consensus 148 ~~~~~~-~~~~iyv~GG 163 (302)
T 2xn4_A 148 SVGVGV-VGGLLYAVGG 163 (302)
T ss_dssp SCEEEE-ETTEEEEECC
T ss_pred CceEEE-ECCEEEEEeC
Confidence 455444 4789999985
No 82
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=71.56 E-value=51 Score=28.73 Aligned_cols=100 Identities=11% Similarity=-0.013 Sum_probs=52.7
Q ss_pred ccceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecC--CCCceEEEEcC--CCeEEEEEcCCcEEEEeCCCCCCC
Q 020659 80 GAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISG--LKKEVVQISTG--YHHSSAITVDGELYMWGKNSNGQL 155 (323)
Q Consensus 80 ~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~--~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~n~~gql 155 (323)
....+.-..||.|+.|-.... .....+.. ....|..++.. ....+.-..+|.|..|-... +
T Consensus 182 ~~~l~~~~~d~~i~iwd~~~~------------~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~-- 246 (437)
T 3gre_A 182 KSLLVALTNLSRVIIFDIRTL------------ERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF-N-- 246 (437)
T ss_dssp CEEEEEEETTSEEEEEETTTC------------CEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT-T--
T ss_pred CCEEEEEeCCCeEEEEeCCCC------------eeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC-c--
Confidence 445666677889999865321 11222222 23367776654 34445557889999996531 0
Q ss_pred CCCCCCCcccccceEecccCCceEEEEecC----CC--eEEEEECCCCEEEEeCC
Q 020659 156 GLGKKAAKVIPIPTKVECLSGIFTKQAALG----FE--QSVAVTGGGKVLSWGAG 204 (323)
Q Consensus 156 g~~~~~~~~~~~p~~~~~~~~~~i~~i~~g----~~--~~~~l~~~g~v~~~G~n 204 (323)
.....+......+|..++.. .+ ..+.-..||.|..|-..
T Consensus 247 ----------~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 291 (437)
T 3gre_A 247 ----------VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV 291 (437)
T ss_dssp ----------EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT
T ss_pred ----------cEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcC
Confidence 00111111122356666332 22 34444667889999654
No 83
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=70.92 E-value=96 Score=31.59 Aligned_cols=182 Identities=13% Similarity=0.124 Sum_probs=88.4
Q ss_pred cceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcC-CCeEEEEEcCCcEEEEeCCCCCCCCCCC
Q 020659 81 AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG-YHHSSAITVDGELYMWGKNSNGQLGLGK 159 (323)
Q Consensus 81 ~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g-~~~~~~lt~~g~v~~~G~n~~gqlg~~~ 159 (323)
...+.-..||.|..|-...... ..+......|..++.. ....+....+|.++.|-.....
T Consensus 1016 ~~l~s~~~dg~i~vwd~~~~~~-------------~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~------ 1076 (1249)
T 3sfz_A 1016 KTLISSSEDSVIQVWNWQTGDY-------------VFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGR------ 1076 (1249)
T ss_dssp SCEEEECSSSBEEEEETTTTEE-------------ECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTC------
T ss_pred CEEEEEcCCCEEEEEECCCCce-------------EEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCc------
Confidence 3444455788899986543211 1112233356665543 3445566788999999653211
Q ss_pred CCCcccccceEecccCCceEEEEe--cCCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCC
Q 020659 160 KAAKVIPIPTKVECLSGIFTKQAA--LGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEG 237 (323)
Q Consensus 160 ~~~~~~~~p~~~~~~~~~~i~~i~--~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~ 237 (323)
....+.... ..|..++ .-....+....+|.|+.|-......+ ..+.. ..
T Consensus 1077 -------~~~~~~~~~-~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~--------------------~~l~~-h~ 1127 (1249)
T 3sfz_A 1077 -------IERDFTCHQ-GTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPL--------------------HELKG-HN 1127 (1249)
T ss_dssp -------CCEEEECCS-SCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCS--------------------BCCCC-CS
T ss_pred -------eeEEEcccC-CcEEEEEECCCCCEEEEEcCCCcEEEEECCCccee--------------------eeecc-CC
Confidence 011111111 1233333 23334555567788888843221100 01111 12
Q ss_pred CcEEEEecCCCe--eEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCee-----ecCCCCeeEEEecCCeeEEEEcCCCEE
Q 020659 238 VKVKIAAAGFLH--SACIDENGRVYIFGDRAVDKMLFQEGNHARRPSL-----ISKLPYSEEVVCGGYHTCVLTSGGELY 310 (323)
Q Consensus 238 ~~i~~i~~g~~~--~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~-----v~~~~~i~~v~~G~~~~~~l~~~g~v~ 310 (323)
..|..++...+. .+.-..||.|+.|-......+. ...|.. ......|..++...+...+++.+|.|.
T Consensus 1128 ~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~------~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~g~v~ 1201 (1249)
T 3sfz_A 1128 GCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLH------SCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYLK 1201 (1249)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCC------CCCCCC-------CCSCCCEEEECTTSSCEEEESSSEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE------EeccccccccccccCceEEEEEECCCCCEEEECCCeEE
Confidence 246666655443 3344578889999765422211 111111 112224667776665555555568888
Q ss_pred EeeCCC
Q 020659 311 TWGSNE 316 (323)
Q Consensus 311 ~~G~n~ 316 (323)
.|-..+
T Consensus 1202 vwd~~~ 1207 (1249)
T 3sfz_A 1202 WWNVAT 1207 (1249)
T ss_dssp EBCSSS
T ss_pred EEECCC
Confidence 886443
No 84
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=70.85 E-value=46 Score=27.94 Aligned_cols=174 Identities=10% Similarity=0.035 Sum_probs=84.3
Q ss_pred ceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcCC--CeEEEEEcCCcEEEEeCCCCCCCCCCC
Q 020659 82 HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY--HHSSAITVDGELYMWGKNSNGQLGLGK 159 (323)
Q Consensus 82 ~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~~ 159 (323)
..+.-..+|.+..|...... ....+......|..++... ...+.-..+|.|+.|-....
T Consensus 136 ~l~~g~~dg~v~i~~~~~~~------------~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~------- 196 (321)
T 3ow8_A 136 YLATGTHVGKVNIFGVESGK------------KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG------- 196 (321)
T ss_dssp EEEEECTTSEEEEEETTTCS------------EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-------
T ss_pred EEEEEcCCCcEEEEEcCCCc------------eeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCC-------
Confidence 33344567778777653211 1122222333555555433 34444567888888854210
Q ss_pred CCCcccccceEecccCCceEEEEecCC--CeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCC
Q 020659 160 KAAKVIPIPTKVECLSGIFTKQAALGF--EQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEG 237 (323)
Q Consensus 160 ~~~~~~~~p~~~~~~~~~~i~~i~~g~--~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~ 237 (323)
.....+... ..+|..++... ...+.-..||.|..|-..... ....+.. ..
T Consensus 197 ------~~~~~~~~h-~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~--------------------~~~~~~~-h~ 248 (321)
T 3ow8_A 197 ------KLLHTLEGH-AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN--------------------LAGTLSG-HA 248 (321)
T ss_dssp ------EEEEEECCC-SSCCCEEEECTTSCEEEEECTTSCEEEEETTTCC--------------------EEEEECC-CS
T ss_pred ------cEEEEEccc-CCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc--------------------eeEEEcC-CC
Confidence 001111111 12344554433 344445678888888532110 0111111 12
Q ss_pred CcEEEEecCCC--eeEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeec-CCCCeeEEEecCC--eeEEEEcCCCEEEe
Q 020659 238 VKVKIAAAGFL--HSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLIS-KLPYSEEVVCGGY--HTCVLTSGGELYTW 312 (323)
Q Consensus 238 ~~i~~i~~g~~--~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~-~~~~i~~v~~G~~--~~~~l~~~g~v~~~ 312 (323)
..|..++...+ +.+.-..||.|..|-......+ ..+. ....|..|+.... ..+.-..||+|..|
T Consensus 249 ~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~-----------~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vw 317 (321)
T 3ow8_A 249 SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCV-----------HTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317 (321)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-----------EEECCCSSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEE-----------EEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 24666665433 4444567899999975431111 1111 1234666665443 34445678998888
Q ss_pred e
Q 020659 313 G 313 (323)
Q Consensus 313 G 313 (323)
-
T Consensus 318 d 318 (321)
T 3ow8_A 318 D 318 (321)
T ss_dssp E
T ss_pred e
Confidence 4
No 85
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=70.78 E-value=14 Score=35.19 Aligned_cols=60 Identities=18% Similarity=0.318 Sum_probs=32.8
Q ss_pred eeEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecCCCCeeEEEecCCeeEEEEcCCCEEEeeC
Q 020659 249 HSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGS 314 (323)
Q Consensus 249 ~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~~~~i~~v~~G~~~~~~l~~~g~v~~~G~ 314 (323)
+++++..+|+||++|-.....+-.= ......+.+++.+.. .=..|+++...+|+||.+|-
T Consensus 246 ~~~~~~~~g~lyv~GG~~~~~v~~y-d~~t~~W~~~~~~~~-----~R~~~s~~~~~dg~iyv~GG 305 (656)
T 1k3i_A 246 PGISMDGNGQIVVTGGNDAKKTSLY-DSSSDSWIPGPDMQV-----ARGYQSSATMSDGRVFTIGG 305 (656)
T ss_dssp CEEEECTTSCEEEECSSSTTCEEEE-EGGGTEEEECCCCSS-----CCSSCEEEECTTSCEEEECC
T ss_pred ccccCCCCCCEEEeCCCCCCceEEe-cCcCCceeECCCCCc-----cccccceEEecCCeEEEEeC
Confidence 3467778999999996432110000 001112333332221 12457777777999999985
No 86
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=69.08 E-value=47 Score=27.35 Aligned_cols=138 Identities=8% Similarity=-0.039 Sum_probs=67.5
Q ss_pred eEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeC--ccceEEEEcCCcEEEEeCCCCccccCC
Q 020659 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG--GAHTLFLTETGCVYATGLNDFGQLGIS 106 (323)
Q Consensus 29 ~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g--~~~~~~lt~~g~v~~~G~n~~gqlg~~ 106 (323)
..+++-..++.|.+|-....- ....+.. ....|..++-. ....+.-..||.|..|-....
T Consensus 78 ~~l~s~~~d~~i~vwd~~~~~-----------~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~------ 139 (312)
T 4ery_A 78 NLLVSASDDKTLKIWDVSSGK-----------CLKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG------ 139 (312)
T ss_dssp SEEEEEETTSEEEEEETTTCC-----------EEEEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC------
T ss_pred CEEEEECCCCEEEEEECCCCc-----------EEEEEcC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC------
Confidence 444455567777777654210 0111111 11234444433 233444567888888854321
Q ss_pred CCCCceecceEecCCCCceEEEEcCC--CeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEE--
Q 020659 107 ENIGYSLEPLRISGLKKEVVQISTGY--HHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQA-- 182 (323)
Q Consensus 107 ~~~~~~~~p~~~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i-- 182 (323)
.....+......|..++... ...+.-..+|.|..|-..... ....+.......+..+
T Consensus 140 ------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-------------~~~~~~~~~~~~~~~~~~ 200 (312)
T 4ery_A 140 ------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ-------------CLKTLIDDDNPPVSFVKF 200 (312)
T ss_dssp ------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-------------EEEEECCSSCCCEEEEEE
T ss_pred ------EEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-------------eeeEEeccCCCceEEEEE
Confidence 11122332333566665433 344555678899998643210 0111111112234333
Q ss_pred ecCCCeEEEEECCCCEEEEeC
Q 020659 183 ALGFEQSVAVTGGGKVLSWGA 203 (323)
Q Consensus 183 ~~g~~~~~~l~~~g~v~~~G~ 203 (323)
+-...+.++-+.+|.|..|-.
T Consensus 201 ~~~~~~l~~~~~d~~i~iwd~ 221 (312)
T 4ery_A 201 SPNGKYILAATLDNTLKLWDY 221 (312)
T ss_dssp CTTSSEEEEEETTTEEEEEET
T ss_pred CCCCCEEEEEcCCCeEEEEEC
Confidence 334456677788999999964
No 87
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=68.02 E-value=52 Score=27.41 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=12.0
Q ss_pred CCeEEEEEcCCcEEEEeC
Q 020659 132 YHHSSAITVDGELYMWGK 149 (323)
Q Consensus 132 ~~~~~~lt~~g~v~~~G~ 149 (323)
..|++++. +++||.+|-
T Consensus 113 ~~~~~~~~-~~~iyv~GG 129 (308)
T 1zgk_A 113 NRIGVGVI-DGHIYAVGG 129 (308)
T ss_dssp BTCEEEEE-TTEEEEECC
T ss_pred cccEEEEE-CCEEEEEcC
Confidence 35555554 789999985
No 88
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=67.06 E-value=52 Score=27.08 Aligned_cols=181 Identities=9% Similarity=0.076 Sum_probs=89.0
Q ss_pred eeEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeCcc--ceEEEEcCCcEEEEeCCCCccccC
Q 020659 28 KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGA--HTLFLTETGCVYATGLNDFGQLGI 105 (323)
Q Consensus 28 ~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g~~--~~~~lt~~g~v~~~G~n~~gqlg~ 105 (323)
...+++-..++.|..|...+.- ....+.. ....|..++-... ..+.-..||.|..|-....
T Consensus 35 ~~~l~s~~~dg~i~iw~~~~~~-----------~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~----- 97 (312)
T 4ery_A 35 GEWLASSSADKLIKIWGAYDGK-----------FEKTISG-HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG----- 97 (312)
T ss_dssp SSEEEEEETTSCEEEEETTTCC-----------EEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-----
T ss_pred CCEEEEeeCCCeEEEEeCCCcc-----------cchhhcc-CCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC-----
Confidence 3445555577888888654210 1111111 1234666655433 3444457888988865321
Q ss_pred CCCCCceecceEecCCCCceEEEEcC--CCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEe
Q 020659 106 SENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAA 183 (323)
Q Consensus 106 ~~~~~~~~~p~~~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~ 183 (323)
.....+......|..++.. ....+.-..+|.|..|-.... .....+.. ...+|..++
T Consensus 98 -------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-------------~~~~~~~~-~~~~v~~~~ 156 (312)
T 4ery_A 98 -------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-------------KCLKTLPA-HSDPVSAVH 156 (312)
T ss_dssp -------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC-------------CEEEEECC-CSSCEEEEE
T ss_pred -------cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-------------EEEEEecC-CCCcEEEEE
Confidence 1112233233355555443 344445567899999964311 00111111 122355554
Q ss_pred cC--CCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEec--CCCeeEEEecCCcE
Q 020659 184 LG--FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAA--GFLHSACIDENGRV 259 (323)
Q Consensus 184 ~g--~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~--g~~~~~~lt~~g~l 259 (323)
.. ....+.-..+|.|..|-.... + ....+.......+..++. .....++-..||.|
T Consensus 157 ~~~~~~~l~~~~~d~~i~~wd~~~~-~-------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 216 (312)
T 4ery_A 157 FNRDGSLIVSSSYDGLCRIWDTASG-Q-------------------CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 216 (312)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTC-C-------------------EEEEECCSSCCCEEEEEECTTSSEEEEEETTTEE
T ss_pred EcCCCCEEEEEeCCCcEEEEECCCC-c-------------------eeeEEeccCCCceEEEEECCCCCEEEEEcCCCeE
Confidence 43 345566678889999854321 0 011111111223444443 33455566788999
Q ss_pred EEEeCCC
Q 020659 260 YIFGDRA 266 (323)
Q Consensus 260 y~wG~n~ 266 (323)
..|-...
T Consensus 217 ~iwd~~~ 223 (312)
T 4ery_A 217 KLWDYSK 223 (312)
T ss_dssp EEEETTT
T ss_pred EEEECCC
Confidence 9997644
No 89
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=67.02 E-value=75 Score=28.85 Aligned_cols=180 Identities=12% Similarity=0.136 Sum_probs=86.6
Q ss_pred ceEEEEeC--ccceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcCC--CeEEEEEcCCcEEEE
Q 020659 72 SLKALACG--GAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY--HHSSAITVDGELYMW 147 (323)
Q Consensus 72 ~i~~v~~g--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~~ 147 (323)
.+..++.. ..+.+.-..+|.+..|-.+. + ....+......|..++... ...+....++.|+.|
T Consensus 346 ~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~--~-----------~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~ 412 (577)
T 2ymu_A 346 SVWGVAFSPDGQTIASASDDKTVKLWNRNG--Q-----------LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 412 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTC--C-----------EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEcCCC--C-----------EEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEE
Confidence 45555544 33444556778888875321 1 1122233344666665533 344455678889888
Q ss_pred eCCCCCCCCCCCCCCcccccceEecccCCceEEEEecC--CCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccc
Q 020659 148 GKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG--FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTS 225 (323)
Q Consensus 148 G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g--~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~ 225 (323)
-.+ ++ ....+... ...|..++.. ....+.-..++.|..|-.+ ++
T Consensus 413 ~~~--~~------------~~~~~~~~-~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~--~~----------------- 458 (577)
T 2ymu_A 413 NRN--GQ------------LLQTLTGH-SSSVWGVAFSPDDQTIASASDDKTVKLWNRN--GQ----------------- 458 (577)
T ss_dssp CTT--CC------------EEEEEECC-SSCEEEEEECTTSSEEEEEETTSEEEEEETT--SC-----------------
T ss_pred eCC--CC------------EEEEecCC-CCCeEEEEECCCCCEEEEEcCCCEEEEEECC--CC-----------------
Confidence 421 11 01111111 2245555443 3344555778888888421 11
Q ss_pred cccceeecccCCCcEEEEecCCCeeEE--EecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecC-CCCeeEEEecCC--ee
Q 020659 226 EYTPRLIKELEGVKVKIAAAGFLHSAC--IDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK-LPYSEEVVCGGY--HT 300 (323)
Q Consensus 226 ~~~p~~i~~~~~~~i~~i~~g~~~~~~--lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~-~~~i~~v~~G~~--~~ 300 (323)
....+.. ....|..++...+...+ -..|+.|..|-.+ +++ ...+.. ...|..|+...+ ..
T Consensus 459 --~~~~~~~-~~~~v~~~~~spd~~~las~~~d~~i~iw~~~--~~~----------~~~~~~h~~~v~~l~~s~dg~~l 523 (577)
T 2ymu_A 459 --LLQTLTG-HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQL----------LQTLTGHSSSVRGVAFSPDGQTI 523 (577)
T ss_dssp --EEEEEEC-CSSCEEEEEECTTSCEEEEEETTSEEEEEETT--SCE----------EEEEECCSSCEEEEEECTTSSCE
T ss_pred --EEEEEcC-CCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC--CCE----------EEEEeCCCCCEEEEEEcCCCCEE
Confidence 0011111 12246666655443333 3578888888632 111 111221 224566655432 33
Q ss_pred EEEEcCCCEEEee
Q 020659 301 CVLTSGGELYTWG 313 (323)
Q Consensus 301 ~~l~~~g~v~~~G 313 (323)
+.-..||.|..|-
T Consensus 524 ~s~~~dg~v~lwd 536 (577)
T 2ymu_A 524 ASASDDKTVKLWN 536 (577)
T ss_dssp EEEETTSEEEEEC
T ss_pred EEEECcCEEEEEe
Confidence 3344677777774
No 90
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=66.30 E-value=68 Score=28.13 Aligned_cols=208 Identities=13% Similarity=0.059 Sum_probs=100.4
Q ss_pred ceEEEEeCcc---ceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcCC---CeEEEEEcCCcEE
Q 020659 72 SLKALACGGA---HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY---HHSSAITVDGELY 145 (323)
Q Consensus 72 ~i~~v~~g~~---~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g~---~~~~~lt~~g~v~ 145 (323)
.|..++.... ..+.-..+|.|+.|-......... ..........+......|..++-.. ...+.-..+|.|.
T Consensus 130 ~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 207 (430)
T 2xyi_A 130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE--PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTIC 207 (430)
T ss_dssp CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC--TTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEE
T ss_pred cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC--ccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEE
Confidence 3556655543 344446689999997643211000 0000111222233333455554432 2555566789999
Q ss_pred EEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEecC---CCeEEEEECCCCEEEEeCCCCCCcCCCCCCCcccccc
Q 020659 146 MWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG---FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLR 222 (323)
Q Consensus 146 ~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g---~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~ 222 (323)
.|-.+..... ............ ....|..++.. ....+....+|.|+.|-......
T Consensus 208 vwd~~~~~~~------~~~~~~~~~~~~-h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~-------------- 266 (430)
T 2xyi_A 208 LWDINATPKE------HRVIDAKNIFTG-HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT-------------- 266 (430)
T ss_dssp EEETTSCCBG------GGEEECSEEECC-CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS--------------
T ss_pred EEeCCCCCCC------CceeccceeecC-CCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC--------------
Confidence 9976532110 000011111211 12246666653 44555667899999996543210
Q ss_pred ccccccceeecccCCCcEEEEecCCC---eeEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeec-CCCCeeEEEecCC
Q 020659 223 STSEYTPRLIKELEGVKVKIAAAGFL---HSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLIS-KLPYSEEVVCGGY 298 (323)
Q Consensus 223 ~~~~~~p~~i~~~~~~~i~~i~~g~~---~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~-~~~~i~~v~~G~~ 298 (323)
..+..........|..++.... ..+.-..||.|..|-.....+ ....+. ....|..|.....
T Consensus 267 ----~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~----------~~~~~~~h~~~v~~i~~sp~ 332 (430)
T 2xyi_A 267 ----SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL----------KLHSFESHKDEIFQVQWSPH 332 (430)
T ss_dssp ----SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS----------CSEEEECCSSCEEEEEECSS
T ss_pred ----CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC----------CeEEeecCCCCEEEEEECCC
Confidence 0111111112234666665443 233446789999998654221 111222 2234666666543
Q ss_pred e---eEEEEcCCCEEEeeCCC
Q 020659 299 H---TCVLTSGGELYTWGSNE 316 (323)
Q Consensus 299 ~---~~~l~~~g~v~~~G~n~ 316 (323)
. .+.-..+|+|..|-.+.
T Consensus 333 ~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 333 NETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp CTTEEEEEETTSCCEEEEGGG
T ss_pred CCCEEEEEeCCCcEEEEeCCC
Confidence 2 33445688888886544
No 91
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=64.85 E-value=59 Score=26.86 Aligned_cols=113 Identities=7% Similarity=0.035 Sum_probs=53.6
Q ss_pred eEEEEecCC--CeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCCC-eeEEEe
Q 020659 178 FTKQAALGF--EQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFL-HSACID 254 (323)
Q Consensus 178 ~i~~i~~g~--~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~-~~~~lt 254 (323)
.|..++... ...+.-..||.|..|-.....+ ...+.. ...|..++.... ..++..
T Consensus 217 ~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~--------------------~~~~~~--~~~v~~~~~~~~~~~~~~~ 274 (340)
T 4aow_A 217 YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH--------------------LYTLDG--GDIINALCFSPNRYWLCAA 274 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTCEEEEEETTTTEE--------------------EEEEEC--SSCEEEEEECSSSSEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEeccCce--------------------eeeecC--CceEEeeecCCCCceeecc
Confidence 466665443 3455557888898885432100 111111 123444444333 445566
Q ss_pred cCCcEEEEeCCCCCcCCcCCCCCcCCCeeecCCCCeeEEEecCC--eeEEEEcCCCEEEee
Q 020659 255 ENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGY--HTCVLTSGGELYTWG 313 (323)
Q Consensus 255 ~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~~~~i~~v~~G~~--~~~~l~~~g~v~~~G 313 (323)
.|+.|+.|-......+..-. ..............|..++...+ ..+.-..||.|..|=
T Consensus 275 ~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 275 TGPSIKIWDLEGKIIVDELK-QEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp ETTEEEEEETTTTEEEEEEC-CC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCCEEEEEECCCCeEEEecc-ccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 78899999754321111000 00000000112234677766544 333445789999884
No 92
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=64.61 E-value=62 Score=27.05 Aligned_cols=16 Identities=38% Similarity=0.642 Sum_probs=11.6
Q ss_pred eEEEEEcCCcEEEEeC
Q 020659 134 HSSAITVDGELYMWGK 149 (323)
Q Consensus 134 ~~~~lt~~g~v~~~G~ 149 (323)
+..++..+++||.+|-
T Consensus 49 ~~~~~~~~~~lyv~GG 64 (318)
T 2woz_A 49 HSSIVTQQNQVYVVGG 64 (318)
T ss_dssp EEEEECSSSCEEEEES
T ss_pred ceEEEEECCEEEEECC
Confidence 3344556889999996
No 93
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=64.05 E-value=61 Score=26.77 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=11.9
Q ss_pred CCeEEEEEcCCcEEEEeC
Q 020659 132 YHHSSAITVDGELYMWGK 149 (323)
Q Consensus 132 ~~~~~~lt~~g~v~~~G~ 149 (323)
..|++++. ++++|.+|-
T Consensus 100 ~~~~~~~~-~~~iyv~GG 116 (302)
T 2xn4_A 100 STLGAAVL-NGLLYAVGG 116 (302)
T ss_dssp BSCEEEEE-TTEEEEEEE
T ss_pred cceEEEEE-CCEEEEEcC
Confidence 34565554 789999985
No 94
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=63.52 E-value=75 Score=27.65 Aligned_cols=109 Identities=9% Similarity=-0.071 Sum_probs=59.1
Q ss_pred ceEEEEeCc--cceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcCCCeEEEEEcCCcEEEEeC
Q 020659 72 SLKALACGG--AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGK 149 (323)
Q Consensus 72 ~i~~v~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~ 149 (323)
.|..|+-.. .+.+.-+.||.|..|-.... .....+......+..++......+.-..++.++.|-.
T Consensus 149 ~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~------------~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~ 216 (420)
T 4gga_A 149 YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ------------KRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDV 216 (420)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTT------------EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEET
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEEcCCC------------cEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeee
Confidence 477776553 34444567899999965432 1222333334467777766666666677888888854
Q ss_pred CCCCCCCCCCCCCcccccceEec-ccCCceEEEEecCCCeEEEEECCCCEEEEeCC
Q 020659 150 NSNGQLGLGKKAAKVIPIPTKVE-CLSGIFTKQAALGFEQSVAVTGGGKVLSWGAG 204 (323)
Q Consensus 150 n~~gqlg~~~~~~~~~~~p~~~~-~~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n 204 (323)
.... .....+. ...............+.+....||.+..|-..
T Consensus 217 ~~~~------------~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~ 260 (420)
T 4gga_A 217 RVAE------------HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA 260 (420)
T ss_dssp TSSS------------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred cccc------------eeeEEecccccceeeeeecCCCCeeeeeeccccceEEeec
Confidence 3211 0011111 11122233333344566667888999988643
No 95
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=63.45 E-value=61 Score=26.56 Aligned_cols=113 Identities=7% Similarity=-0.086 Sum_probs=61.3
Q ss_pred eeeEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeCc----cceEEEEcCCcEEEEeCCCCcc
Q 020659 27 CKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGG----AHTLFLTETGCVYATGLNDFGQ 102 (323)
Q Consensus 27 ~~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g~----~~~~~lt~~g~v~~~G~n~~gq 102 (323)
...++++-..++.|.+|-..... ........+. .....|..++-.. ...+.-..||.|..|-......
T Consensus 22 ~~~~l~~~~~dg~i~iw~~~~~~-------~~~~~~~~~~-~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~ 93 (351)
T 3f3f_A 22 YGRHVATCSSDQHIKVFKLDKDT-------SNWELSDSWR-AHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQE 93 (351)
T ss_dssp SSSEEEEEETTSEEEEEEECSSS-------CCEEEEEEEE-CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSC
T ss_pred CCCEEEEeeCCCeEEEEECCCCC-------Ccceecceec-cCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcc
Confidence 44455666688889999765321 0111111111 1234577777643 4455567799999997653211
Q ss_pred ccCCCCCCceecceEecCCCCceEEEEcCC----CeEEEEEcCCcEEEEeCC
Q 020659 103 LGISENIGYSLEPLRISGLKKEVVQISTGY----HHSSAITVDGELYMWGKN 150 (323)
Q Consensus 103 lg~~~~~~~~~~p~~~~~~~~~i~~i~~g~----~~~~~lt~~g~v~~~G~n 150 (323)
... .........+......|..++... ...+....+|.|+.|-..
T Consensus 94 ~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 142 (351)
T 3f3f_A 94 ECS---GRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142 (351)
T ss_dssp TTS---SCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECS
T ss_pred ccc---ccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCC
Confidence 000 000112233333444787777664 356666789999999754
No 96
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=63.20 E-value=78 Score=27.75 Aligned_cols=126 Identities=16% Similarity=0.048 Sum_probs=69.6
Q ss_pred EEcCCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEecC-----CCeEEEEECCCCEEEEe
Q 020659 128 ISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG-----FEQSVAVTGGGKVLSWG 202 (323)
Q Consensus 128 i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g-----~~~~~~l~~~g~v~~~G 202 (323)
++.+.++.+++|+.|++|.+-.......+....- .+....++..++.+|+.+..- ..+.+++|++|.+.-.-
T Consensus 53 ~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G---~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~ 129 (370)
T 3l6v_A 53 LVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARG---RPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTP 129 (370)
T ss_dssp EECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCC---EEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEE
T ss_pred EecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCC---cCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeE
Confidence 4556677888999999999876544333322111 122222333345678777653 34678889999877665
Q ss_pred CCCCCCcCCCCCCCccccccccccccceeecccCCCcEEE--EecCCCeeEEEecCCcEEEEeCCCCCcCC
Q 020659 203 AGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKI--AAAGFLHSACIDENGRVYIFGDRAVDKML 271 (323)
Q Consensus 203 ~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~--i~~g~~~~~~lt~~g~ly~wG~n~~gqlg 271 (323)
...|-..... --..+...++..++. +..+....+++|++|++..+-...--.+|
T Consensus 130 l~e~~~~~~~---------------G~~ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~g 185 (370)
T 3l6v_A 130 LSEFAFRLAR---------------GKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMG 185 (370)
T ss_dssp GGGGCSCCTT---------------CEESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred HHHhhcccCC---------------ceEEEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccC
Confidence 4333211100 000011111223333 33466788999999999988655443333
No 97
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=61.87 E-value=64 Score=26.29 Aligned_cols=48 Identities=10% Similarity=0.137 Sum_probs=27.6
Q ss_pred cCCcEEEEeCCCCCcCCcCCCCCcCCCeeecC-CCCeeEEEecCCeeEE--EEcCCCEEEee
Q 020659 255 ENGRVYIFGDRAVDKMLFQEGNHARRPSLISK-LPYSEEVVCGGYHTCV--LTSGGELYTWG 313 (323)
Q Consensus 255 ~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~-~~~i~~v~~G~~~~~~--l~~~g~v~~~G 313 (323)
.||.|+.|-......+ ..+.. ...|..|+.......+ -..||+|..|=
T Consensus 262 ~d~~i~iwd~~~~~~~-----------~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 262 AQNQLVIWKYPTMAKV-----------AELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312 (318)
T ss_dssp TTCCEEEEETTTCCEE-----------EEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred CCCEEEEEECCCCcEE-----------EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 6889999975442111 12222 2347777765443333 44789998884
No 98
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=61.79 E-value=72 Score=26.84 Aligned_cols=227 Identities=9% Similarity=0.015 Sum_probs=109.2
Q ss_pred eeEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeCccceE--EEEcCCcEEEEeCCCCccccC
Q 020659 28 KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTL--FLTETGCVYATGLNDFGQLGI 105 (323)
Q Consensus 28 ~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g~~~~~--~lt~~g~v~~~G~n~~gqlg~ 105 (323)
..++++-..|+.|..|-.....+.+ ....|......-...|..++......+ .-..||.|..|-....
T Consensus 39 ~~~l~sgs~D~~v~iWd~~~~~~~~-----~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~----- 108 (343)
T 2xzm_R 39 SPVLISGSRDKTVMIWKLYEEEQNG-----YFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG----- 108 (343)
T ss_dssp CCEEEEEETTSCEEEEEECSSCCSS-----BSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSS-----
T ss_pred CCEEEEEcCCCEEEEEECCcCCccc-----ccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC-----
Confidence 3456666688888888755322111 011122211112234667766544433 3356888999965321
Q ss_pred CCCCCceecceEecCCCCceEEEEcCC--CeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEe
Q 020659 106 SENIGYSLEPLRISGLKKEVVQISTGY--HHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAA 183 (323)
Q Consensus 106 ~~~~~~~~~p~~~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~ 183 (323)
.....+......|..++... ...+.-..+++|..|-........... .......|..+.
T Consensus 109 -------~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~------------~~~~~~~v~~~~ 169 (343)
T 2xzm_R 109 -------TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAE------------KENHSDWVSCVR 169 (343)
T ss_dssp -------CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCT------------TTSCSSCEEEEE
T ss_pred -------cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeec------------ccCCCceeeeee
Confidence 11222333344676666543 345556778999999643100000000 000011233333
Q ss_pred cCC------------CeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCCC--e
Q 020659 184 LGF------------EQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFL--H 249 (323)
Q Consensus 184 ~g~------------~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~--~ 249 (323)
... .+.+....+|.|..|-.+. + ....+.. ....|..++...+ .
T Consensus 170 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~-------------------~~~~~~~-h~~~v~~~~~s~~g~~ 227 (343)
T 2xzm_R 170 YSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF--Q-------------------IRYTFKA-HESNVNHLSISPNGKY 227 (343)
T ss_dssp ECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT--E-------------------EEEEEEC-CSSCEEEEEECTTSSE
T ss_pred eccccccccccCCCCCEEEEEcCCCEEEEEcCCC--c-------------------eeEEEcC-ccccceEEEECCCCCE
Confidence 222 3456678899999995210 0 0011111 1224666665544 3
Q ss_pred eEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecCCCCeeEEEecCC-eeEEEEcCCCEEEeeCC
Q 020659 250 SACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGY-HTCVLTSGGELYTWGSN 315 (323)
Q Consensus 250 ~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~~~~i~~v~~G~~-~~~~l~~~g~v~~~G~n 315 (323)
.+.-..||.|..|-.....+. ...+.....|..|+.... ..++...++.|..|-..
T Consensus 228 l~sgs~dg~v~iwd~~~~~~~----------~~~~~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~ 284 (343)
T 2xzm_R 228 IATGGKDKKLLIWDILNLTYP----------QREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLM 284 (343)
T ss_dssp EEEEETTCEEEEEESSCCSSC----------SEEEECSSCEEEEEECSSSCEEEEEESSCEEEEESS
T ss_pred EEEEcCCCeEEEEECCCCccc----------ceeecCCCcEEEEEECCCCCEEEEECCCCEEEEEeC
Confidence 344457899999976331111 111212233556665433 33445567777777543
No 99
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=61.51 E-value=82 Score=27.42 Aligned_cols=138 Identities=9% Similarity=0.061 Sum_probs=68.0
Q ss_pred eeEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeCc--cceEEEEcCCcEEEEeCCCCccccC
Q 020659 28 KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGG--AHTLFLTETGCVYATGLNDFGQLGI 105 (323)
Q Consensus 28 ~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~ 105 (323)
..++++-..|+.|.+|-.... ++ ...+.. -...|..|+-.. ...+.-..||.|..|-......
T Consensus 120 ~~~l~s~s~Dg~i~vwd~~~~-~~----------~~~l~~-h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~--- 184 (410)
T 1vyh_C 120 FSVMVSASEDATIKVWDYETG-DF----------ERTLKG-HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC--- 184 (410)
T ss_dssp SSEEEEEESSSCEEEEETTTC-CC----------CEEECC-CSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCE---
T ss_pred CCEEEEEeCCCeEEEEECCCC-cE----------EEEEec-cCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce---
Confidence 345666667888888865431 10 011111 112355555433 2333445678888885432111
Q ss_pred CCCCCceecceEecCCCCceEEEEcC--CCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEe
Q 020659 106 SENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAA 183 (323)
Q Consensus 106 ~~~~~~~~~p~~~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~ 183 (323)
...+......|..++.. ..+.+.-..++.|..|-..... ....+... ...|..+.
T Consensus 185 ---------~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~-------------~~~~~~~h-~~~v~~~~ 241 (410)
T 1vyh_C 185 ---------IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-------------CVKTFTGH-REWVRMVR 241 (410)
T ss_dssp ---------EECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-------------EEEEEECC-SSCEEEEE
T ss_pred ---------eEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-------------EEEEEeCC-CccEEEEE
Confidence 11122223356666553 3455566789999999653210 00111111 11244443
Q ss_pred c--CCCeEEEEECCCCEEEEeC
Q 020659 184 L--GFEQSVAVTGGGKVLSWGA 203 (323)
Q Consensus 184 ~--g~~~~~~l~~~g~v~~~G~ 203 (323)
. .....+.-..||.|..|-.
T Consensus 242 ~~~~g~~l~s~s~D~~v~vwd~ 263 (410)
T 1vyh_C 242 PNQDGTLIASCSNDQTVRVWVV 263 (410)
T ss_dssp ECTTSSEEEEEETTSCEEEEET
T ss_pred ECCCCCEEEEEcCCCeEEEEEC
Confidence 3 3334555677888888854
No 100
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=60.30 E-value=78 Score=26.81 Aligned_cols=205 Identities=12% Similarity=0.099 Sum_probs=101.7
Q ss_pred CceEEEEeCc---cceEEEEcCCcEEEEeCCCCccccCCCCCCceecc-eEe-----cCCCCceEEEEc---CCCeEEEE
Q 020659 71 HSLKALACGG---AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEP-LRI-----SGLKKEVVQIST---GYHHSSAI 138 (323)
Q Consensus 71 ~~i~~v~~g~---~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p-~~~-----~~~~~~i~~i~~---g~~~~~~l 138 (323)
..|..++... ...+.-..||.|..|-......... ....+ ... ......|..++. +....+..
T Consensus 44 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 118 (408)
T 4a11_B 44 GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSY-----YTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS 118 (408)
T ss_dssp SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSC-----EEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEE
T ss_pred CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccce-----EeccccccccccccccCCCcEEEEEEccCCCcEEEEE
Confidence 3566666644 3444556799999997653221110 00000 000 113336777765 33456666
Q ss_pred EcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEecCC-----CeEEEEECCCCEEEEeCCCCCCcCCCC
Q 020659 139 TVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF-----EQSVAVTGGGKVLSWGAGGSGRLGHGQ 213 (323)
Q Consensus 139 t~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~-----~~~~~l~~~g~v~~~G~n~~gqlG~~~ 213 (323)
..+|.|..|-.... .....+... ..+..+.... ...++-..+|.|+.|-.....
T Consensus 119 ~~d~~i~iwd~~~~-------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~------ 177 (408)
T 4a11_B 119 SFDKTLKVWDTNTL-------------QTADVFNFE--ETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS------ 177 (408)
T ss_dssp ETTSEEEEEETTTT-------------EEEEEEECS--SCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC------
T ss_pred eCCCeEEEeeCCCC-------------ccceeccCC--CceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc------
Confidence 77999999965321 111111111 1244443322 256666889999999643210
Q ss_pred CCCccccccccccccceeecccCCCcEEEEecCCCe---eEEEecCCcEEEEeCCCCCcCCc-CC---CCCcCCC-ee-e
Q 020659 214 ESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLH---SACIDENGRVYIFGDRAVDKMLF-QE---GNHARRP-SL-I 284 (323)
Q Consensus 214 ~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~---~~~lt~~g~ly~wG~n~~gqlg~-~~---~~~~~~p-~~-v 284 (323)
....+.. ....|..++..... .+.-..||.|+.|-.......-. -. ......+ .. .
T Consensus 178 --------------~~~~~~~-~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (408)
T 4a11_B 178 --------------CSHILQG-HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANT 242 (408)
T ss_dssp --------------CCEEECC-CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSC
T ss_pred --------------eeeeecC-CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccc
Confidence 1111211 12356666655443 44567899999998654221100 00 0000000 00 1
Q ss_pred cCCCCeeEEEecCC--eeEEEEcCCCEEEeeCCC
Q 020659 285 SKLPYSEEVVCGGY--HTCVLTSGGELYTWGSNE 316 (323)
Q Consensus 285 ~~~~~i~~v~~G~~--~~~~l~~~g~v~~~G~n~ 316 (323)
.....|..++.... +.+....||.|..|-...
T Consensus 243 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 243 AHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred cccCceeEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence 11224666766543 455566899999997654
No 101
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=58.79 E-value=76 Score=26.14 Aligned_cols=223 Identities=11% Similarity=0.026 Sum_probs=101.2
Q ss_pred eEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeCcc--ceEEEEcCCcEEEEeCCCCccccCC
Q 020659 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGA--HTLFLTETGCVYATGLNDFGQLGIS 106 (323)
Q Consensus 29 ~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g~~--~~~~lt~~g~v~~~G~n~~gqlg~~ 106 (323)
.++++-..|+.|.+|-....- .....|......-...|..++-..+ ..+.-..||.|+.|-.....
T Consensus 52 ~~l~S~s~D~~i~vWd~~~~~-------~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~----- 119 (340)
T 4aow_A 52 DMILSASRDKTIIMWKLTRDE-------TNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGT----- 119 (340)
T ss_dssp TEEEEEETTSCEEEEEECCSS-------SCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----
T ss_pred CEEEEEcCCCeEEEEECCCCC-------cccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccc-----
Confidence 466666688889888755321 1111222211111234555554433 34444567888877653321
Q ss_pred CCCCceecceEecCCCCce--EEEEcCCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEe-
Q 020659 107 ENIGYSLEPLRISGLKKEV--VQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAA- 183 (323)
Q Consensus 107 ~~~~~~~~p~~~~~~~~~i--~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~- 183 (323)
...........+ ..........+.-..++.+..|-..... .+..........+..++
T Consensus 120 -------~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~-------------~~~~~~~~~~~~v~~~~~ 179 (340)
T 4aow_A 120 -------TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC-------------KYTVQDESHSEWVSCVRF 179 (340)
T ss_dssp -------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE-------------EEEECSSSCSSCEEEEEE
T ss_pred -------eeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc-------------eEEEEeccccCcccceEE
Confidence 111111112222 2233334444555678888888432110 00010000111233332
Q ss_pred -cCCC--eEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCCC--eeEEEecCCc
Q 020659 184 -LGFE--QSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFL--HSACIDENGR 258 (323)
Q Consensus 184 -~g~~--~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~--~~~~lt~~g~ 258 (323)
.... ..+.-..++.|..|-.... .....+.. ....|..++...+ ..+.-..||.
T Consensus 180 ~~~~~~~~~~s~~~d~~i~i~d~~~~--------------------~~~~~~~~-h~~~v~~~~~s~~~~~l~s~s~Dg~ 238 (340)
T 4aow_A 180 SPNSSNPIIVSCGWDKLVKVWNLANC--------------------KLKTNHIG-HTGYLNTVTVSPDGSLCASGGKDGQ 238 (340)
T ss_dssp CSCSSSCEEEEEETTSCEEEEETTTT--------------------EEEEEECC-CSSCEEEEEECTTSSEEEEEETTCE
T ss_pred ccCCCCcEEEEEcCCCEEEEEECCCC--------------------ceeeEecC-CCCcEEEEEECCCCCEEEEEeCCCe
Confidence 2222 2334467888888853211 01111111 1224666665443 3334457899
Q ss_pred EEEEeCCCCCcCCcCCCCCcCCCeeecCCCCeeEEEecC-CeeEEEEcCCCEEEeeCC
Q 020659 259 VYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGG-YHTCVLTSGGELYTWGSN 315 (323)
Q Consensus 259 ly~wG~n~~gqlg~~~~~~~~~p~~v~~~~~i~~v~~G~-~~~~~l~~~g~v~~~G~n 315 (323)
+..|-.....++ ..+.....+..+.... .+.++-..++.|..|-..
T Consensus 239 i~iwd~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~ 285 (340)
T 4aow_A 239 AMLWDLNEGKHL-----------YTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLE 285 (340)
T ss_dssp EEEEETTTTEEE-----------EEEECSSCEEEEEECSSSSEEEEEETTEEEEEETT
T ss_pred EEEEEeccCcee-----------eeecCCceEEeeecCCCCceeeccCCCEEEEEECC
Confidence 999976542221 1222223344444433 344455567888777543
No 102
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=55.78 E-value=1e+02 Score=26.76 Aligned_cols=95 Identities=3% Similarity=-0.039 Sum_probs=50.7
Q ss_pred CeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecC--CCeeEEEecCCcEEEEeC
Q 020659 187 EQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAG--FLHSACIDENGRVYIFGD 264 (323)
Q Consensus 187 ~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~lt~~g~ly~wG~ 264 (323)
.+.+.-..||.|..|-.... + ....+.. ....|..++.. ....+.-..||.|..|-.
T Consensus 309 ~~l~sgs~D~~i~iwd~~~~-~-------------------~~~~~~~-h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~ 367 (410)
T 1vyh_C 309 PFLLSGSRDKTIKMWDVSTG-M-------------------CLMTLVG-HDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367 (410)
T ss_dssp CEEEEEETTSEEEEEETTTT-E-------------------EEEEEEC-CSSCEEEEEECSSSSCEEEEETTTEEEEECC
T ss_pred CEEEEEeCCCeEEEEECCCC-c-------------------eEEEEEC-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 35556678899999964311 0 0011111 11245555543 344555568899999965
Q ss_pred CCCCcCCcCCCCCcCCCeeecCC-CCeeEEEecCCe--eEEEEcCCCEEEee
Q 020659 265 RAVDKMLFQEGNHARRPSLISKL-PYSEEVVCGGYH--TCVLTSGGELYTWG 313 (323)
Q Consensus 265 n~~gqlg~~~~~~~~~p~~v~~~-~~i~~v~~G~~~--~~~l~~~g~v~~~G 313 (323)
.... ....+... ..|..++..... .+.-..||+|..|-
T Consensus 368 ~~~~-----------~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 368 KNKR-----------CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp TTSC-----------CCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCc-----------eEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 3311 11222222 247777766553 33345788888884
No 103
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=55.74 E-value=88 Score=25.99 Aligned_cols=16 Identities=13% Similarity=0.135 Sum_probs=11.5
Q ss_pred CeEEEEEcCCcEEEEeC
Q 020659 133 HHSSAITVDGELYMWGK 149 (323)
Q Consensus 133 ~~~~~lt~~g~v~~~G~ 149 (323)
.|++++. +++||.+|-
T Consensus 91 ~~~~~~~-~~~lyv~GG 106 (315)
T 4asc_A 91 LFGLGEA-LNSIYVVGG 106 (315)
T ss_dssp SCEEEEE-TTEEEEECC
T ss_pred ceeEEEE-CCEEEEEeC
Confidence 4555554 789999986
No 104
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=54.99 E-value=70 Score=27.17 Aligned_cols=17 Identities=24% Similarity=0.192 Sum_probs=12.6
Q ss_pred CCeEEEEECCCCEEEEeC
Q 020659 186 FEQSVAVTGGGKVLSWGA 203 (323)
Q Consensus 186 ~~~~~~l~~~g~v~~~G~ 203 (323)
..|++++ .+++||++|-
T Consensus 110 ~~~~~~~-~~~~iyv~GG 126 (357)
T 2uvk_A 110 AGHVTFV-HNGKAYVTGG 126 (357)
T ss_dssp SSEEEEE-ETTEEEEEEC
T ss_pred ccceEEE-ECCEEEEEeC
Confidence 3466666 6789999983
No 105
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=54.25 E-value=1.3e+02 Score=27.28 Aligned_cols=103 Identities=14% Similarity=0.152 Sum_probs=53.2
Q ss_pred ceEEEEeCcc--ceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcC--CCeEEEEEcCCcEEEE
Q 020659 72 SLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYMW 147 (323)
Q Consensus 72 ~i~~v~~g~~--~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~ 147 (323)
.|..++.... ..+.-..||.|..|-.+.. ....+......+..++.. ....+.-.++|.+..|
T Consensus 305 ~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-------------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~ 371 (577)
T 2ymu_A 305 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-------------HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 371 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTSC-------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-------------eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 4666655433 3344456788888854211 122233334466665543 3455556778888888
Q ss_pred eCCCCCCCCCCCCCCcccccceEecccCCceEEEEecC--CCeEEEEECCCCEEEEe
Q 020659 148 GKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG--FEQSVAVTGGGKVLSWG 202 (323)
Q Consensus 148 G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g--~~~~~~l~~~g~v~~~G 202 (323)
-.+ ++ ....+... ...|..++.. ..+.+....++.|..|-
T Consensus 372 ~~~--~~------------~~~~~~~~-~~~v~~~~~s~dg~~l~~~~~d~~v~~~~ 413 (577)
T 2ymu_A 372 NRN--GQ------------LLQTLTGH-SSSVRGVAFSPDGQTIASASDDKTVKLWN 413 (577)
T ss_dssp ETT--CC------------EEEEEECC-SSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred cCC--CC------------EEEEecCC-CCCeEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 532 11 11111111 2245555543 33555567788888884
No 106
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=53.88 E-value=1e+02 Score=26.19 Aligned_cols=56 Identities=11% Similarity=0.060 Sum_probs=28.9
Q ss_pred CeeEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecCCCCeeEEEecCCeeEEEEcCCCEEEe
Q 020659 248 LHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTW 312 (323)
Q Consensus 248 ~~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~~~~i~~v~~G~~~~~~l~~~g~v~~~ 312 (323)
...++.+.+|.||++-...-..+.. ..+....-.......+...++.+.+|.||++
T Consensus 319 ~~l~v~~~~g~l~~~d~~tG~~~~~---------~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~~ 374 (376)
T 3q7m_A 319 GNLVVGDSEGYLHWINVEDGRFVAQ---------QKVDSSGFQTEPVAADGKLLIQAKDGTVYSI 374 (376)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEE---------EECCTTCBCSCCEEETTEEEEEBTTSCEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEE---------EecCCCcceeCCEEECCEEEEEeCCCEEEEE
Confidence 4566667778888876544111110 0110000011112235677778889999987
No 107
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=53.31 E-value=1.2e+02 Score=26.60 Aligned_cols=67 Identities=13% Similarity=0.078 Sum_probs=36.1
Q ss_pred CceEEEEeCc--cceE-EEEcCCcEEEEeCCCCccccCCCCCCceecceEec--CCCCceEEEEcC---CCeEEEEEcCC
Q 020659 71 HSLKALACGG--AHTL-FLTETGCVYATGLNDFGQLGISENIGYSLEPLRIS--GLKKEVVQISTG---YHHSSAITVDG 142 (323)
Q Consensus 71 ~~i~~v~~g~--~~~~-~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~--~~~~~i~~i~~g---~~~~~~lt~~g 142 (323)
.+|..|+-.. ...+ .=..||.|..|-.... ..+..+. .....|..|+-. ....+.-..||
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~------------~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~ 187 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIK------------DKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEG 187 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEETTSCEEEECSSCC------------SCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSS
T ss_pred CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCC------------CceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCC
Confidence 3577777642 2233 3467999999943211 1112222 223366666643 23444455688
Q ss_pred cEEEEeC
Q 020659 143 ELYMWGK 149 (323)
Q Consensus 143 ~v~~~G~ 149 (323)
.|..|-.
T Consensus 188 ~v~iwd~ 194 (435)
T 4e54_B 188 TTRLQDF 194 (435)
T ss_dssp CEEEEET
T ss_pred EEEEeec
Confidence 8988853
No 108
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=52.91 E-value=85 Score=24.94 Aligned_cols=15 Identities=33% Similarity=0.395 Sum_probs=9.1
Q ss_pred eEEEEECCCCEEEEe
Q 020659 188 QSVAVTGGGKVLSWG 202 (323)
Q Consensus 188 ~~~~l~~~g~v~~~G 202 (323)
+.++++.+|++|+-.
T Consensus 153 ~~i~~~~~g~l~v~~ 167 (270)
T 1rwi_B 153 DGVAVDNSGNVYVTD 167 (270)
T ss_dssp CCEEECTTCCEEEEE
T ss_pred eeEEEeCCCCEEEEE
Confidence 345666667776654
No 109
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=52.28 E-value=1.2e+02 Score=26.36 Aligned_cols=98 Identities=9% Similarity=0.021 Sum_probs=54.4
Q ss_pred cceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcCC--CeEEEEEcCCcEEEEeCCCCCCCCCC
Q 020659 81 AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY--HHSSAITVDGELYMWGKNSNGQLGLG 158 (323)
Q Consensus 81 ~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~ 158 (323)
...+++--|+.||.|-.... .......+......|..|+-.. .+.+.-+.+|.|..|-....
T Consensus 116 ~n~lAvgld~tV~lWd~~tg----------~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~------ 179 (420)
T 4gga_A 116 GNVLAVALDNSVYLWSASSG----------DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ------ 179 (420)
T ss_dssp TSEEEEEETTEEEEEETTTC----------CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT------
T ss_pred CCEEEEEeCCEEEEEECCCC----------CEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC------
Confidence 44677777999999964321 1111122222233577776543 34444578899999965321
Q ss_pred CCCCcccccceEecccCCceEEEEecCCCeEEEEECCCCEEEEe
Q 020659 159 KKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWG 202 (323)
Q Consensus 159 ~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~~G 202 (323)
.....+... ...+..++......+.-..++.++.|-
T Consensus 180 -------~~~~~~~~h-~~~v~~~s~~~~~l~sgs~d~~i~~~d 215 (420)
T 4gga_A 180 -------KRLRNMTSH-SARVGSLSWNSYILSSGSRSGHIHHHD 215 (420)
T ss_dssp -------EEEEEECCC-SSCEEEEEEETTEEEEEETTSEEEEEE
T ss_pred -------cEEEEEeCC-CCceEEEeeCCCEEEEEeCCCceeEee
Confidence 111111111 234666666666666667788888875
No 110
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=52.12 E-value=88 Score=24.86 Aligned_cols=14 Identities=29% Similarity=0.302 Sum_probs=7.5
Q ss_pred eEEEEECCCCEEEE
Q 020659 188 QSVAVTGGGKVLSW 201 (323)
Q Consensus 188 ~~~~l~~~g~v~~~ 201 (323)
+.++++.+|++|+.
T Consensus 111 ~~i~~~~~g~l~v~ 124 (270)
T 1rwi_B 111 EGLAVDTQGAVYVA 124 (270)
T ss_dssp EEEEECTTCCEEEE
T ss_pred cceEECCCCCEEEE
Confidence 34555555666654
No 111
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=51.92 E-value=1.1e+02 Score=25.97 Aligned_cols=148 Identities=10% Similarity=0.052 Sum_probs=73.2
Q ss_pred CceEEEEcCCC--eEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEecC---CCeEEEEECCCC
Q 020659 123 KEVVQISTGYH--HSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG---FEQSVAVTGGGK 197 (323)
Q Consensus 123 ~~i~~i~~g~~--~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g---~~~~~~l~~~g~ 197 (323)
..|..++...+ ..+.-..+|.|..|-.+.. .....+... ...|..++.. ....+....||.
T Consensus 140 ~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~-------------~~~~~~~~h-~~~v~~v~~s~~~~~~~~s~~~dg~ 205 (357)
T 4g56_B 140 DIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK-------------AVLKSYNAH-SSEVNCVAACPGKDTIFLSCGEDGR 205 (357)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEETTTT-------------EEEEEECCC-SSCEEEEEECTTCSSCEEEEETTSC
T ss_pred CCEEEEEECCCCCEEEEEeCCCeEEEEECCCC-------------cEEEEEcCC-CCCEEEEEEccCCCceeeeeccCCc
Confidence 36776665443 4444567899999954310 111111111 2246666553 234556678899
Q ss_pred EEEEeCCCCCCcCCCCCCCccccccccccccceeec-ccCCCcEEEEecCCC--eeE-EEecCCcEEEEeCCCCCcCCcC
Q 020659 198 VLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIK-ELEGVKVKIAAAGFL--HSA-CIDENGRVYIFGDRAVDKMLFQ 273 (323)
Q Consensus 198 v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~-~~~~~~i~~i~~g~~--~~~-~lt~~g~ly~wG~n~~gqlg~~ 273 (323)
|..|-.... + ....+. ......+..++.... ..+ .-..|+.|+.|-......
T Consensus 206 v~~wd~~~~-~-------------------~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~---- 261 (357)
T 4g56_B 206 ILLWDTRKP-K-------------------PATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS---- 261 (357)
T ss_dssp EEECCTTSS-S-------------------CBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG----
T ss_pred eEEEECCCC-c-------------------eeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcE----
Confidence 999842211 0 000011 111224666665432 233 336788999996543111
Q ss_pred CCCCcCCCeeecCC-CCeeEEEecCC---eeEEEEcCCCEEEeeCC
Q 020659 274 EGNHARRPSLISKL-PYSEEVVCGGY---HTCVLTSGGELYTWGSN 315 (323)
Q Consensus 274 ~~~~~~~p~~v~~~-~~i~~v~~G~~---~~~~l~~~g~v~~~G~n 315 (323)
...+... ..|..++.... ..+.-..||+|..|-.+
T Consensus 262 -------~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~ 300 (357)
T 4g56_B 262 -------AQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDAD 300 (357)
T ss_dssp -------CEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred -------eEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECC
Confidence 1122222 24666665432 22334578888888543
No 112
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=51.37 E-value=1.2e+02 Score=26.23 Aligned_cols=153 Identities=8% Similarity=-0.005 Sum_probs=71.9
Q ss_pred eeEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeCc--cceEEEEcCCcEEEEeCC--CCccc
Q 020659 28 KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGG--AHTLFLTETGCVYATGLN--DFGQL 103 (323)
Q Consensus 28 ~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g~--~~~~~lt~~g~v~~~G~n--~~gql 103 (323)
..++++-..|+.|.+|-....- .+. ...+.... .-...|..|+... ...+.-..||.|..|-.. ..+++
T Consensus 76 ~~~l~s~s~dg~v~vwd~~~~~-~~~-----~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~ 148 (437)
T 3gre_A 76 TPYLITGSDQGVIKIWNLKEII-VGE-----VYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESE 148 (437)
T ss_dssp SCEEEEEETTSEEEEEEHHHHH-TTC-----CCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTE
T ss_pred CCEEEEecCCceEEEeECcccc-cCc-----ccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCce
Confidence 3466666678888888654210 000 00001110 0123466666643 345555678998888542 11111
Q ss_pred cCCCCCCceecceEec--C--CCCceEEEEc----CCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEeccc-
Q 020659 104 GISENIGYSLEPLRIS--G--LKKEVVQIST----GYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECL- 174 (323)
Q Consensus 104 g~~~~~~~~~~p~~~~--~--~~~~i~~i~~----g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~- 174 (323)
-.. ........+. . ....+..+.. .....+.-+.+|.|+.|-.... .....+...
T Consensus 149 ~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-------------~~~~~~~~~~ 212 (437)
T 3gre_A 149 VKF---LNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL-------------ERLQIIENSP 212 (437)
T ss_dssp EEE---EEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC-------------CEEEEEECCG
T ss_pred eec---cccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-------------eeeEEEccCC
Confidence 000 0000001111 1 1224555442 2445556678899999965321 011111110
Q ss_pred CCceEEEEecC--CCeEEEEECCCCEEEEeC
Q 020659 175 SGIFTKQAALG--FEQSVAVTGGGKVLSWGA 203 (323)
Q Consensus 175 ~~~~i~~i~~g--~~~~~~l~~~g~v~~~G~ 203 (323)
....|..++.. ..+.+.-+.+|.|..|-.
T Consensus 213 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 243 (437)
T 3gre_A 213 RHGAVSSICIDEECCVLILGTTRGIIDIWDI 243 (437)
T ss_dssp GGCCEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred CCCceEEEEECCCCCEEEEEcCCCeEEEEEc
Confidence 11246666553 345556688899999964
No 113
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=50.61 E-value=1e+02 Score=25.31 Aligned_cols=17 Identities=24% Similarity=0.481 Sum_probs=11.8
Q ss_pred CCeEEEEEcCCcEEEEeC
Q 020659 132 YHHSSAITVDGELYMWGK 149 (323)
Q Consensus 132 ~~~~~~lt~~g~v~~~G~ 149 (323)
..|++++ -++++|.+|-
T Consensus 141 ~~~~~~~-~~~~iyv~GG 157 (306)
T 3ii7_A 141 CSHGMVE-ANGLIYVCGG 157 (306)
T ss_dssp BSCEEEE-ETTEEEEECC
T ss_pred ceeEEEE-ECCEEEEECC
Confidence 4455544 4889999985
No 114
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=45.63 E-value=1.2e+02 Score=24.45 Aligned_cols=15 Identities=13% Similarity=0.175 Sum_probs=9.0
Q ss_pred eEEEEECCCCEEEEe
Q 020659 188 QSVAVTGGGKVLSWG 202 (323)
Q Consensus 188 ~~~~l~~~g~v~~~G 202 (323)
+.++++.+|++|+..
T Consensus 167 ~~i~~~~~g~l~v~~ 181 (286)
T 1q7f_A 167 NGVVVNDKQEIFISD 181 (286)
T ss_dssp EEEEECSSSEEEEEE
T ss_pred EEEEECCCCCEEEEE
Confidence 455666666666654
No 115
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=45.59 E-value=1.2e+02 Score=24.72 Aligned_cols=17 Identities=18% Similarity=0.323 Sum_probs=11.7
Q ss_pred CCeEEEEEcCCcEEEEeC
Q 020659 132 YHHSSAITVDGELYMWGK 149 (323)
Q Consensus 132 ~~~~~~lt~~g~v~~~G~ 149 (323)
..|++++ -++++|.+|-
T Consensus 151 ~~~~~~~-~~~~iyv~GG 167 (301)
T 2vpj_A 151 EGAGLVV-ASGVIYCLGG 167 (301)
T ss_dssp BSCEEEE-ETTEEEEECC
T ss_pred ccceEEE-ECCEEEEECC
Confidence 3455554 4789999985
No 116
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=45.10 E-value=1.2e+02 Score=24.40 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=10.5
Q ss_pred eEEEEECCCCEEEEeC
Q 020659 188 QSVAVTGGGKVLSWGA 203 (323)
Q Consensus 188 ~~~~l~~~g~v~~~G~ 203 (323)
..++++.+|++|+-..
T Consensus 210 ~~i~~d~~G~l~v~~~ 225 (286)
T 1q7f_A 210 IGVGINSNGEILIADN 225 (286)
T ss_dssp EEEEECTTCCEEEEEC
T ss_pred cEEEECCCCCEEEEeC
Confidence 4566677777777653
No 117
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=42.88 E-value=1.5e+02 Score=24.97 Aligned_cols=190 Identities=10% Similarity=0.025 Sum_probs=97.5
Q ss_pred ceEEEEeCcc---ceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEec--CCCCceEEEEcCC---CeEEEEEcCCc
Q 020659 72 SLKALACGGA---HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRIS--GLKKEVVQISTGY---HHSSAITVDGE 143 (323)
Q Consensus 72 ~i~~v~~g~~---~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~--~~~~~i~~i~~g~---~~~~~lt~~g~ 143 (323)
.|..++.... ..+.-..||.|..|-.... .....+. .....|..++... ...+....+|.
T Consensus 75 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~------------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 142 (383)
T 3ei3_B 75 RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ------------NKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA 142 (383)
T ss_dssp CEEEEEECSSCTTEEEEEEBTSCEEEEETTST------------TCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCc------------ccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence 4566655443 3445566888888865421 0111122 2334777776644 44555577899
Q ss_pred EEEEeCCCCCCCCCCCCCCcccccceEecccC--CceEEEE--ecCCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccc
Q 020659 144 LYMWGKNSNGQLGLGKKAAKVIPIPTKVECLS--GIFTKQA--ALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILG 219 (323)
Q Consensus 144 v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~--~~~i~~i--~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~ 219 (323)
|..|-... . ....+.... ...|..+ +......+.-..+|.|+.|-.. ++
T Consensus 143 i~iwd~~~----------~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~----------- 195 (383)
T 3ei3_B 143 TTLRDFSG----------S----VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD--GH----------- 195 (383)
T ss_dssp EEEEETTS----------C----EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT--SC-----------
T ss_pred EEEEECCC----------C----ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC--CC-----------
Confidence 99996531 0 011111111 1224443 3445566667888899998631 00
Q ss_pred cccccccccceeecccCCCcEEEEecCCC---eeEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecCCCCeeEEEec
Q 020659 220 FLRSTSEYTPRLIKELEGVKVKIAAAGFL---HSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCG 296 (323)
Q Consensus 220 ~~~~~~~~~p~~i~~~~~~~i~~i~~g~~---~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~~~~i~~v~~G 296 (323)
....+. .....|..++.... ..+.-..||.|..|-....... ......+.....|..++..
T Consensus 196 --------~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-------~~~~~~~~~~~~v~~~~~s 259 (383)
T 3ei3_B 196 --------EIFKEK-LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK-------NSYIAEMPHEKPVNAAYFN 259 (383)
T ss_dssp --------EEEEEE-CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST-------TCEEEEEECSSCEEEEEEC
T ss_pred --------EEEEec-cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc-------cceEEEecCCCceEEEEEc
Confidence 011111 11235666666554 3344467889999975441100 0011112233356777765
Q ss_pred C---CeeEEEEcCCCEEEeeCCC
Q 020659 297 G---YHTCVLTSGGELYTWGSNE 316 (323)
Q Consensus 297 ~---~~~~~l~~~g~v~~~G~n~ 316 (323)
. ...+.-..||+|..|-..+
T Consensus 260 ~~~~~~l~~~~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 260 PTDSTKLLTTDQRNEIRVYSSYD 282 (383)
T ss_dssp TTTSCEEEEEESSSEEEEEETTB
T ss_pred CCCCCEEEEEcCCCcEEEEECCC
Confidence 4 3444455788999987554
No 118
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=42.74 E-value=1e+02 Score=25.59 Aligned_cols=17 Identities=12% Similarity=0.284 Sum_probs=11.6
Q ss_pred CCeeEEEecCCcEEEEeC
Q 020659 247 FLHSACIDENGRVYIFGD 264 (323)
Q Consensus 247 ~~~~~~lt~~g~ly~wG~ 264 (323)
..|+++.. +++||++|-
T Consensus 101 ~~~~~~~~-~~~iyv~GG 117 (318)
T 2woz_A 101 CLFGLGEV-DDKIYVVAG 117 (318)
T ss_dssp CSCEEEEE-TTEEEEEEE
T ss_pred cccceEEE-CCEEEEEcC
Confidence 34555544 789999984
No 119
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=42.58 E-value=1.4e+02 Score=24.44 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=14.5
Q ss_pred eeEEEecCCcEEEEeCCCCCcCC
Q 020659 249 HSACIDENGRVYIFGDRAVDKML 271 (323)
Q Consensus 249 ~~~~lt~~g~ly~wG~n~~gqlg 271 (323)
..+.++.+|++ .|-.+...+.|
T Consensus 245 ~~~~~~~~g~~-~W~~~~~~~~~ 266 (276)
T 3no2_A 245 QLVEIDSEGKV-VWQLNDKVKFG 266 (276)
T ss_dssp SEEEECTTSBE-EEEECCTTTSC
T ss_pred eEEEECCCCCE-EEEecCccccc
Confidence 57778888886 56655554544
No 120
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=41.40 E-value=1.5e+02 Score=24.37 Aligned_cols=18 Identities=17% Similarity=0.384 Sum_probs=12.3
Q ss_pred CCeEEEEEcCCcEEEEeCC
Q 020659 132 YHHSSAITVDGELYMWGKN 150 (323)
Q Consensus 132 ~~~~~~lt~~g~v~~~G~n 150 (323)
..|++++ -+++||.+|-.
T Consensus 93 ~~~~~~~-~~~~iyv~GG~ 110 (306)
T 3ii7_A 93 DSLAACA-AEGKIYTSGGS 110 (306)
T ss_dssp BSCEEEE-ETTEEEEECCB
T ss_pred cceeEEE-ECCEEEEECCC
Confidence 3455554 48899999863
No 121
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=40.22 E-value=1.5e+02 Score=24.17 Aligned_cols=18 Identities=11% Similarity=0.058 Sum_probs=12.4
Q ss_pred CCeEEEEEcCCcEEEEeCC
Q 020659 132 YHHSSAITVDGELYMWGKN 150 (323)
Q Consensus 132 ~~~~~~lt~~g~v~~~G~n 150 (323)
..|++++. ++++|.+|-.
T Consensus 104 ~~~~~~~~-~~~lyv~GG~ 121 (301)
T 2vpj_A 104 GLAGATTL-GDMIYVSGGF 121 (301)
T ss_dssp BSCEEEEE-TTEEEEECCB
T ss_pred cceeEEEE-CCEEEEEccc
Confidence 45555554 7899999853
No 122
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=39.40 E-value=1.8e+02 Score=24.78 Aligned_cols=232 Identities=12% Similarity=0.041 Sum_probs=112.8
Q ss_pred hhhcccccceeeeEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeCc-----cceEEEEcCCc
Q 020659 17 DIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGG-----AHTLFLTETGC 91 (323)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g~-----~~~~~lt~~g~ 91 (323)
|....+.....|..++..+++|.+|.+-...-=..+... .-......+...++++|+.+..-. .+.+++|++|.
T Consensus 39 D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a-~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~ 117 (323)
T 1wp5_A 39 DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKD-LGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGM 117 (323)
T ss_dssp CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTS-CCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSE
T ss_pred CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCC-CCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCe
Confidence 333333333333333333488888887766422222111 111111223344667787765433 35788899998
Q ss_pred EEEEeCCCCccccCCCCCCceecceEecCCCCceEE--EEcCCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccce
Q 020659 92 VYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQ--ISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPT 169 (323)
Q Consensus 92 v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~--i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~ 169 (323)
+--.-..++-.... ..-.....+.. .+.++. +..+.++.+++|++|+++.+-.++...+|....-.+
T Consensus 118 iKrt~l~e~~~~~r----~~G~~ai~l~e-~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~------ 186 (323)
T 1wp5_A 118 VKKTELKHYKAQRY----SKPLTGINLKN-DDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVK------ 186 (323)
T ss_dssp EEEEEGGGGCCSCC----SSCEECSCCCT-TCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEE------
T ss_pred EEEeEHHHhhhccc----cCceEEEEeCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEE------
Confidence 87765443321110 00001111111 124443 334678899999999999998776555554221111
Q ss_pred EecccCCceEEEEec--CCC-eEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEE--Ee
Q 020659 170 KVECLSGIFTKQAAL--GFE-QSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKI--AA 244 (323)
Q Consensus 170 ~~~~~~~~~i~~i~~--g~~-~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~--i~ 244 (323)
.+...++..|+.+.. -.. ..+.++++|...-.-...+-..+++.. ....+...+. .+..+.. +.
T Consensus 187 ~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~k----------Gv~~~~~~~~-~~~~l~~~~~v 255 (323)
T 1wp5_A 187 GMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKR----------GVVILRELKA-NPHRISGFVVA 255 (323)
T ss_dssp CCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSC----------CEECSCCCSS-SCCCEEEEEEE
T ss_pred EEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCC----------CEECeeecCC-CCceEEEEEEe
Confidence 111123334655532 122 566777777654443333322222221 1112211111 1113332 23
Q ss_pred cCCCeeEEEecCCcEEEEeCCCCCcCC
Q 020659 245 AGFLHSACIDENGRVYIFGDRAVDKML 271 (323)
Q Consensus 245 ~g~~~~~~lt~~g~ly~wG~n~~gqlg 271 (323)
...+..+++|++|.+.-.-.++....|
T Consensus 256 ~~~~~i~~it~~g~~ir~~~~~i~~~~ 282 (323)
T 1wp5_A 256 QDSDTIYLQTEKSFIETIKVGDIRFSD 282 (323)
T ss_dssp CTTCEEEEEETTSCEEEEEGGGSCBCC
T ss_pred CCCCeEEEEeCCCeEEEEEhhhcCccC
Confidence 456778899999999877665544444
No 123
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=37.50 E-value=2.9e+02 Score=26.61 Aligned_cols=124 Identities=11% Similarity=0.059 Sum_probs=69.8
Q ss_pred EEcCCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEecC--CCeEEEEECCCCEEEEeCCC
Q 020659 128 ISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG--FEQSVAVTGGGKVLSWGAGG 205 (323)
Q Consensus 128 i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g--~~~~~~l~~~g~v~~~G~n~ 205 (323)
.+...+..+++|+.|++|..-....... ..+-.+....++..++.+|+.+... ..+.++.|++|.+.-.-...
T Consensus 510 ~~~t~d~ll~ft~~Gr~y~~~~~~lP~~-----~~~G~~i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~ 584 (716)
T 1zvu_A 510 KGKSNQPVVFVDSTGRSYAIDPITLPSA-----RGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFND 584 (716)
T ss_dssp CCCSSSCEEEEETTSEEEEECTTTSCCC-----C---CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGG
T ss_pred EecCCCEEEEEecCCcEEEEEeeecccc-----cccCeeHHhccCCCCCCeEEEEEEecCCceEEEEeCCceEEEecHHH
Confidence 3456677888999999999875443221 1111233333444456678888765 34567779999887654322
Q ss_pred CCCcCCCCCCCccccccccccccce-eecccCCCcEEE---EecCCCeeEEEecCCcEEEEeCCCCCcCCc
Q 020659 206 SGRLGHGQESSILGFLRSTSEYTPR-LIKELEGVKVKI---AAAGFLHSACIDENGRVYIFGDRAVDKMLF 272 (323)
Q Consensus 206 ~gqlG~~~~~~~~~~~~~~~~~~p~-~i~~~~~~~i~~---i~~g~~~~~~lt~~g~ly~wG~n~~gqlg~ 272 (323)
+-. ....-. .+...++..++. +..+..+.+++|++|++..+-..+--.+|.
T Consensus 585 ~~~----------------~~~~g~~ai~L~~~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~~~~v~~~gr 639 (716)
T 1zvu_A 585 LVA----------------RNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 639 (716)
T ss_dssp GCC----------------CSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEESTTSCBCSS
T ss_pred hcc----------------cCccceEEEeeCCCCEEEEEEEecCCCCEEEEEeCCCeEEEEEHHHCCccCc
Confidence 210 000111 111112223332 224677899999999999998776544443
No 124
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A
Probab=36.45 E-value=1.2e+02 Score=22.04 Aligned_cols=105 Identities=13% Similarity=0.004 Sum_probs=55.6
Q ss_pred eEEEEeCccceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEE-EcCCCeEEEEEcCCcEEEEeCCC
Q 020659 73 LKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQI-STGYHHSSAITVDGELYMWGKNS 151 (323)
Q Consensus 73 i~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i-~~g~~~~~~lt~~g~v~~~G~n~ 151 (323)
+.--.|...+.+-+..||+|-.-.... +.........+. ..++.| .+-....+++..+|+||+--..
T Consensus 8 ~~~~~~~~g~~L~I~~dG~V~Gt~~~~--------~~~s~l~~~~v~---~G~V~I~g~~sg~yL~m~~~G~v~Gs~~~- 75 (132)
T 3q7x_A 8 VLLRSTETGQFLRINPDGTVDGTRDRS--------DPGIQFQISPEG---NGEVLLRSTETGQFLRINPDGTVDGTRDR- 75 (132)
T ss_dssp EEEEETTTCCEEEECTTSBEEEECCTT--------CGGGCEEEEEEE---TTEEEEEETTTCCEEEECTTSBEEEECC--
T ss_pred heeeeccCcEEEEECCCCcEEeecCCC--------CCCcEEEEEecc---cCEEEEEEEcccEEEEECCCCCEeeccCC-
Confidence 344456677777888899998654321 111122222222 134444 3455677888999999975321
Q ss_pred CCCCCCCCCCCcccccceEec-ccCCceEEEEecCCCeEEEEECCCCEEEE
Q 020659 152 NGQLGLGKKAAKVIPIPTKVE-CLSGIFTKQAALGFEQSVAVTGGGKVLSW 201 (323)
Q Consensus 152 ~gqlg~~~~~~~~~~~p~~~~-~~~~~~i~~i~~g~~~~~~l~~~g~v~~~ 201 (323)
.. .......+. ......++.+..|. .++++.+|++|.-
T Consensus 76 ---------s~-ec~flE~~~~~~g~v~ikg~~sg~--YLamnk~G~lygs 114 (132)
T 3q7x_A 76 ---------SD-PGIQFQISPEGNGEVLLRSTETGQ--FLRINPDGTVDGT 114 (132)
T ss_dssp ---------CC-GGGCEEEEEEETTEEEEEETTTCC--EEEECTTSBEEEE
T ss_pred ---------CC-CceeEEEEeecCcEEEEEeccCCe--EEEECCCCcCcCC
Confidence 11 111111111 11122344444444 8999999999963
No 125
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=34.37 E-value=1.4e+02 Score=22.11 Aligned_cols=66 Identities=12% Similarity=-0.081 Sum_probs=40.1
Q ss_pred CceEEEEcCC-CeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEecC-CCeEEEEECCCCEEE
Q 020659 123 KEVVQISTGY-HHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG-FEQSVAVTGGGKVLS 200 (323)
Q Consensus 123 ~~i~~i~~g~-~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g-~~~~~~l~~~g~v~~ 200 (323)
....++.|-. .+.+-+..||+|-+-.... +. .. -..+.... ..++.|.|- ..+.+++..+|+||.
T Consensus 30 ~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~~----------~~-~s-~lei~sv~-~G~V~L~g~~sg~yL~mn~~G~l~G 96 (142)
T 3p6j_A 30 NGEVLLKSTETGQYLRINPDGTVDGTRDRS----------DT-HI-QFQISPEG-NGEVLLKSTETGQYLRINPDGTVDG 96 (142)
T ss_dssp TTCEEEEETTTCCEEEECTTSBEEEECCTT----------CG-GG-CEEEEEEE-TTEEEEEETTTTEEEEECTTSBEEE
T ss_pred CcEEEEEEeCCCEEEEECCCCCEeeecCCC----------CC-ce-EEEEEEcc-CCEEEEEEecCCEEEeECCCCCEee
Confidence 3667777765 6777788899998764321 11 11 11111111 136777764 467889999999996
Q ss_pred E
Q 020659 201 W 201 (323)
Q Consensus 201 ~ 201 (323)
-
T Consensus 97 s 97 (142)
T 3p6j_A 97 T 97 (142)
T ss_dssp E
T ss_pred c
Confidence 4
No 126
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=33.43 E-value=2.2e+02 Score=24.13 Aligned_cols=252 Identities=11% Similarity=0.019 Sum_probs=0.0
Q ss_pred hhhhcccccceeeeEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeCccceEEEEcCCcEEEE
Q 020659 16 QDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYAT 95 (323)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~ 95 (323)
...+..++......++++-..|+.|.+|-.. ........-.......-..++......+.-..|+.+..|
T Consensus 66 ~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~----------~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw 135 (380)
T 3iz6_a 66 SGKVYSLDWTPEKNWIVSASQDGRLIVWNAL----------TSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIF 135 (380)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEEETT----------TTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEE
T ss_pred ccEEEEEEEcCCCCEEEEEeCCCeEEEEECC----------CCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEE
Q ss_pred eCCCCccccCCCCCCceecceEecCCCCceEEEEc---CCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEec
Q 020659 96 GLNDFGQLGISENIGYSLEPLRISGLKKEVVQIST---GYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVE 172 (323)
Q Consensus 96 G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~---g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~ 172 (323)
-...... ..........+......+..+.. +....+.-..|+.|..|-. ..............
T Consensus 136 ~~~~~~~-----~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~---------~~~~~~~~~~~~~~ 201 (380)
T 3iz6_a 136 NLSSQAD-----RDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDV---------TTGQRISIFGSEFP 201 (380)
T ss_dssp ECCCCSS-----CCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECT---------TTCCEEEEECCCSS
T ss_pred ECCCCcc-----ccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEc---------CCCcEEEEeecccC
Q ss_pred ccCCceEEEEec---CCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCCCe
Q 020659 173 CLSGIFTKQAAL---GFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLH 249 (323)
Q Consensus 173 ~~~~~~i~~i~~---g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~ 249 (323)
......|..++. ..+..+.-..||.|..|- ......+.....-....|..++...+.
T Consensus 202 ~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd--------------------~~~~~~~~~~~~~h~~~v~~v~~~p~~ 261 (380)
T 3iz6_a 202 SGHTADVLSLSINSLNANMFISGSCDTTVRLWD--------------------LRITSRAVRTYHGHEGDINSVKFFPDG 261 (380)
T ss_dssp SSCCSCEEEEEECSSSCCEEEEEETTSCEEEEE--------------------TTTTCCCCEEECCCSSCCCEEEECTTS
T ss_pred CCCccCeEEEEeecCCCCEEEEEECCCeEEEEE--------------------CCCCCcceEEECCcCCCeEEEEEecCC
Q ss_pred eEEEe--cCCcEEEEeCCCCCcCCcCCCCCcCCCeeecCCCCeeEEEecCCeeEEEEcCCCEEEe
Q 020659 250 SACID--ENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTW 312 (323)
Q Consensus 250 ~~~lt--~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~~~~i~~v~~G~~~~~~l~~~g~v~~~ 312 (323)
..+++ .||.|..|-.....++..-...........+... ...+.......++-..||.|+.|
T Consensus 262 ~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~g~~l~~g~~dg~i~vw 325 (380)
T 3iz6_a 262 QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVT-SVAFSISGRLLFAGYSNGDCYVW 325 (380)
T ss_dssp SEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCS-EEEECSSSSEEEEECTTSCEEEE
T ss_pred CeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceE-EEEECCCCCEEEEEECCCCEEEE
No 127
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=33.32 E-value=1.9e+02 Score=23.33 Aligned_cols=120 Identities=8% Similarity=-0.030 Sum_probs=64.1
Q ss_pred ceEEEEeCc--cceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcC----CCeEEEEEcCCcEE
Q 020659 72 SLKALACGG--AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG----YHHSSAITVDGELY 145 (323)
Q Consensus 72 ~i~~v~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g----~~~~~~lt~~g~v~ 145 (323)
.|..++-.. ...+.-..||.|..|-..... ........+......|..++.. ....+....+|.|.
T Consensus 13 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCSSDQHIKVFKLDKDT--------SNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEEECSSS--------CCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ceeEEEEcCCCCEEEEeeCCCeEEEEECCCCC--------CcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 466665543 334445678999999654211 1111222333344578887764 34555567899999
Q ss_pred EEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEecCC----CeEEEEECCCCEEEEeCC
Q 020659 146 MWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF----EQSVAVTGGGKVLSWGAG 204 (323)
Q Consensus 146 ~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~----~~~~~l~~~g~v~~~G~n 204 (323)
.|-.+...... ..+.......+.. ....|..++... .+.+....+|.|+.|-..
T Consensus 85 vwd~~~~~~~~----~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 142 (351)
T 3f3f_A 85 LWEEDPDQEEC----SGRRWNKLCTLND-SKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142 (351)
T ss_dssp EEEECTTSCTT----SSCSEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETTCEEEEEECS
T ss_pred EEecCCCcccc----cccCcceeeeecc-cCCceeEEEEcCCCCCcEEEEecCCCcEEEecCC
Confidence 99764321100 0000011111211 223577776664 456677889999999644
No 128
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=33.23 E-value=2e+02 Score=23.63 Aligned_cols=18 Identities=22% Similarity=0.479 Sum_probs=12.3
Q ss_pred CCeeEEEecCCcEEEEeCC
Q 020659 247 FLHSACIDENGRVYIFGDR 265 (323)
Q Consensus 247 ~~~~~~lt~~g~ly~wG~n 265 (323)
..|+++. .+++||++|-.
T Consensus 140 ~~~~~~~-~~~~iyv~GG~ 157 (315)
T 4asc_A 140 YGHTVLS-HMDLVYVIGGK 157 (315)
T ss_dssp BSCEEEE-ETTEEEEECCB
T ss_pred cceeEEE-ECCEEEEEeCC
Confidence 3455554 57799999854
No 129
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=32.48 E-value=2.2e+02 Score=23.87 Aligned_cols=237 Identities=6% Similarity=-0.092 Sum_probs=0.0
Q ss_pred hcccccceeeeEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeCccceEEEEcCCcEEEEeCC
Q 020659 19 KLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLN 98 (323)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n 98 (323)
+..++.......+++-..++.+..|-... .....................-...+......+.-..||.|..|
T Consensus 109 v~~~~~sp~g~~lasg~~d~~i~v~~~~~----~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lw--- 181 (354)
T 2pbi_B 109 VMACAYAPSGCAIACGGLDNKCSVYPLTF----DKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALW--- 181 (354)
T ss_dssp CCEEEECTTSSEEEEESTTSEEEEEECCC----CTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEE---
T ss_pred EEEEEECCCCCEEEEeeCCCCEEEEEEec----cccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEE---
Q ss_pred CCccccCCCCCCceecceEecCCCCceEEEEcCC----CeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEeccc
Q 020659 99 DFGQLGISENIGYSLEPLRISGLKKEVVQISTGY----HHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECL 174 (323)
Q Consensus 99 ~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g~----~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~ 174 (323)
+.........+......|..++... +..+.-..+|.|+.|-.. ...+......
T Consensus 182 ---------d~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~--------------~~~~~~~~~~ 238 (354)
T 2pbi_B 182 ---------DVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR--------------SGQCVQAFET 238 (354)
T ss_dssp ---------ETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETT--------------TCCEEEEECC
T ss_pred ---------eCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECC--------------CCcEEEEecC
Q ss_pred CCceEEEEec--CCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCCCeeEE
Q 020659 175 SGIFTKQAAL--GFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSAC 252 (323)
Q Consensus 175 ~~~~i~~i~~--g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~ 252 (323)
....|..++. .....+.-..|+.|..|-... .........-.......-...+......++
T Consensus 239 h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~-----------------~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~ 301 (354)
T 2pbi_B 239 HESDVNSVRYYPSGDAFASGSDDATCRLYDLRA-----------------DREVAIYSKESIIFGASSVDFSLSGRLLFA 301 (354)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-----------------TEEEEEECCTTCCSCEEEEEECTTSSEEEE
T ss_pred CCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCC-----------------CcEEEEEcCCCcccceeEEEEeCCCCEEEE
Q ss_pred EecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecCCCCeeEEEecCCeeEEEE--cCCCEEEe
Q 020659 253 IDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLT--SGGELYTW 312 (323)
Q Consensus 253 lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~~~~i~~v~~G~~~~~~l~--~~g~v~~~ 312 (323)
-..||.|..|-... .............|..++....-..+++ .||+|..|
T Consensus 302 g~~d~~i~vwd~~~----------~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW 353 (354)
T 2pbi_B 302 GYNDYTINVWDVLK----------GSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353 (354)
T ss_dssp EETTSCEEEEETTT----------CSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred EECCCcEEEEECCC----------CceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEec
No 130
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=32.36 E-value=2.1e+02 Score=23.53 Aligned_cols=217 Identities=10% Similarity=0.038 Sum_probs=0.0
Q ss_pred EEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeCccceEEEEc--CCcEEEEeCCCCccccCCC
Q 020659 30 WISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTE--TGCVYATGLNDFGQLGISE 107 (323)
Q Consensus 30 ~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g~~~~~~lt~--~g~v~~~G~n~~gqlg~~~ 107 (323)
++++-..|+.|..|-..... .....|.....--...|..++.......+++. ||.|..|
T Consensus 32 ~l~s~s~D~~v~~W~~~~~~-------~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~w------------ 92 (319)
T 3frx_A 32 LLLSASRDKTLISWKLTGDD-------QKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW------------ 92 (319)
T ss_dssp EEEEEETTSEEEEEEEEEET-------TEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE------------
T ss_pred EEEEecCCccEEEecCCCCC-------ccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEE------------
Q ss_pred CCCceecceEecCCCCceEEEEcCCCeEEEE--EcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEecC
Q 020659 108 NIGYSLEPLRISGLKKEVVQISTGYHHSSAI--TVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG 185 (323)
Q Consensus 108 ~~~~~~~p~~~~~~~~~i~~i~~g~~~~~~l--t~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g 185 (323)
+.........+......|..++......+++ ..++.+..|-. .........-....|..+...
T Consensus 93 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~---------------~~~~~~~~~~h~~~v~~~~~~ 157 (319)
T 3frx_A 93 DVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI---------------KGQCLATLLGHNDWVSQVRVV 157 (319)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEET---------------TSCEEEEECCCSSCEEEEEEC
T ss_pred ECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC---------------CCCeEEEEeccCCcEEEEEEc
Q ss_pred CC--------eEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCCCeeEEEe--c
Q 020659 186 FE--------QSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACID--E 255 (323)
Q Consensus 186 ~~--------~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt--~ 255 (323)
.. ..+.-..++.|..| ......+.....-....|..++...+...+++ .
T Consensus 158 ~~~~~~~~~~~l~s~~~d~~i~~w---------------------d~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~ 216 (319)
T 3frx_A 158 PNEKADDDSVTIISAGNDKMVKAW---------------------NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK 216 (319)
T ss_dssp CC------CCEEEEEETTSCEEEE---------------------ETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET
T ss_pred cCCCCCCCccEEEEEeCCCEEEEE---------------------ECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC
Q ss_pred CCcEEEEeCCCCCcCCcCCCCCcCCCeeecCCCCeeEEEec-CCeeEEEEcCCCEEEe
Q 020659 256 NGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCG-GYHTCVLTSGGELYTW 312 (323)
Q Consensus 256 ~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~~~~i~~v~~G-~~~~~~l~~~g~v~~~ 312 (323)
||.|..|-... ......+.....+..++.. +...++...+..+..|
T Consensus 217 dg~i~iwd~~~-----------~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~ 263 (319)
T 3frx_A 217 DGEIMLWNLAA-----------KKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVF 263 (319)
T ss_dssp TCEEEEEETTT-----------TEEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEE
T ss_pred CCeEEEEECCC-----------CcEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEE
No 131
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=32.24 E-value=3.2e+02 Score=25.55 Aligned_cols=184 Identities=13% Similarity=0.092 Sum_probs=89.8
Q ss_pred eEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeCccc--eEEEEcCCcEEEEeCCCCccccCC
Q 020659 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAH--TLFLTETGCVYATGLNDFGQLGIS 106 (323)
Q Consensus 29 ~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g~~~--~~~lt~~g~v~~~G~n~~gqlg~~ 106 (323)
.++++-..|+.|..|-....... .......+.. -...|..++..... .+.-..||.|..|-....
T Consensus 396 ~~l~s~s~D~~i~~W~~~~~~~~------~~~~~~~~~~-h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~------ 462 (694)
T 3dm0_A 396 DIIVSASRDKSIILWKLTKDDKA------YGVAQRRLTG-HSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG------ 462 (694)
T ss_dssp SEEEEEETTSEEEEEECCCSTTC------SCEEEEEEEC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT------
T ss_pred CEEEEEeCCCcEEEEEccCCCcc------cccccceecC-CCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC------
Confidence 35666668888999976542211 0001111111 12246666554433 334456888888854321
Q ss_pred CCCCceecceEecCCCCceEEEEcC--CCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEec-cc--CCceEEE
Q 020659 107 ENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVE-CL--SGIFTKQ 181 (323)
Q Consensus 107 ~~~~~~~~p~~~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~-~~--~~~~i~~ 181 (323)
.....+......|..++.. ....+.-..|+.|..|-.... ....+. .. ....|..
T Consensus 463 ------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~--------------~~~~~~~~~~~h~~~v~~ 522 (694)
T 3dm0_A 463 ------VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE--------------CKYTISEGGEGHRDWVSC 522 (694)
T ss_dssp ------EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC--------------EEEEECSSTTSCSSCEEE
T ss_pred ------cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC--------------cceeeccCCCCCCCcEEE
Confidence 1222333344467766554 344555567899999943110 000110 00 0112555
Q ss_pred EecCCC----eEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCCCee--EEEec
Q 020659 182 AALGFE----QSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHS--ACIDE 255 (323)
Q Consensus 182 i~~g~~----~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~--~~lt~ 255 (323)
++...+ ..+.-..||.|..|-.... + ....+.. ....|..++...+.. +.-..
T Consensus 523 ~~~~~~~~~~~l~s~s~d~~v~vwd~~~~-~-------------------~~~~~~~-h~~~v~~v~~spdg~~l~sg~~ 581 (694)
T 3dm0_A 523 VRFSPNTLQPTIVSASWDKTVKVWNLSNC-K-------------------LRSTLAG-HTGYVSTVAVSPDGSLCASGGK 581 (694)
T ss_dssp EEECSCSSSCEEEEEETTSCEEEEETTTC-C-------------------EEEEECC-CSSCEEEEEECTTSSEEEEEET
T ss_pred EEEeCCCCcceEEEEeCCCeEEEEECCCC-c-------------------EEEEEcC-CCCCEEEEEEeCCCCEEEEEeC
Confidence 544332 3455578899999964321 0 0111111 122466666554433 33457
Q ss_pred CCcEEEEeCCC
Q 020659 256 NGRVYIFGDRA 266 (323)
Q Consensus 256 ~g~ly~wG~n~ 266 (323)
||.|..|-...
T Consensus 582 Dg~i~iwd~~~ 592 (694)
T 3dm0_A 582 DGVVLLWDLAE 592 (694)
T ss_dssp TSBCEEEETTT
T ss_pred CCeEEEEECCC
Confidence 88888887544
No 132
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=32.01 E-value=3.5e+02 Score=26.00 Aligned_cols=123 Identities=13% Similarity=0.024 Sum_probs=66.3
Q ss_pred cceeeeEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeC--ccceEEEEcCCcEEEEeCCCCc
Q 020659 24 LGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG--GAHTLFLTETGCVYATGLNDFG 101 (323)
Q Consensus 24 ~~~~~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g--~~~~~~lt~~g~v~~~G~n~~g 101 (323)
.+..|..++.-+++|.+|.--... +-.+..........+...++++|+.+... ..+.++.|++|.+.-.-...+-
T Consensus 510 ~~~t~d~ll~ft~~Gr~y~~~~~~---lP~~~~~G~~i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~~ 586 (716)
T 1zvu_A 510 KGKSNQPVVFVDSTGRSYAIDPIT---LPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLV 586 (716)
T ss_dssp CCCSSSCEEEEETTSEEEEECTTT---SCCCC---CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGC
T ss_pred EecCCCEEEEEecCCcEEEEEeee---cccccccCeeHHhccCCCCCCeEEEEEEecCCceEEEEeCCceEEEecHHHhc
Confidence 333344444444788888765543 22221111222233344467888888775 3456778889988866543321
Q ss_pred cccCCCCCCceecceEecCCC--CceEE---EEcCCCeEEEEEcCCcEEEEeCCCCCCCCC
Q 020659 102 QLGISENIGYSLEPLRISGLK--KEVVQ---ISTGYHHSSAITVDGELYMWGKNSNGQLGL 157 (323)
Q Consensus 102 qlg~~~~~~~~~~p~~~~~~~--~~i~~---i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~ 157 (323)
. .. ..-...-.+. +.++. +..+..+.++++++|++..+-.+....+|.
T Consensus 587 ~------~~--~~g~~ai~L~~~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~~~~v~~~gr 639 (716)
T 1zvu_A 587 A------RN--RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 639 (716)
T ss_dssp C------CS--TTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEESTTSCBCSS
T ss_pred c------cC--ccceEEEeeCCCCEEEEEEEecCCCCEEEEEeCCCeEEEEEHHHCCccCc
Confidence 0 00 0111111121 12322 224678899999999999998876655554
No 133
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=30.63 E-value=2.4e+02 Score=23.55 Aligned_cols=145 Identities=11% Similarity=0.039 Sum_probs=69.2
Q ss_pred eeEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeCc--cceEEEEcCCcEEEEeCCCCccccC
Q 020659 28 KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGG--AHTLFLTETGCVYATGLNDFGQLGI 105 (323)
Q Consensus 28 ~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~ 105 (323)
...+++-..|+.|..|...... ......+..--...|..++-.. ...+.-..|+.+..|-.+..
T Consensus 28 g~~las~~~D~~i~iw~~~~~~---------~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~----- 93 (345)
T 3fm0_A 28 GTLLASCGGDRRIRIWGTEGDS---------WICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQD----- 93 (345)
T ss_dssp SSCEEEEETTSCEEEEEEETTE---------EEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-----
T ss_pred CCEEEEEcCCCeEEEEEcCCCc---------ceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCC-----
Confidence 3445555577888888643210 0001111111123466665543 33344456888888854321
Q ss_pred CCCCCceecceEecCCCCceEEEEcCC--CeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEe
Q 020659 106 SENIGYSLEPLRISGLKKEVVQISTGY--HHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAA 183 (323)
Q Consensus 106 ~~~~~~~~~p~~~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~ 183 (323)
.......+......|..++-.. ...+.-..++.|+.|-...... ......+... ...|..++
T Consensus 94 -----~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~----------~~~~~~~~~h-~~~v~~~~ 157 (345)
T 3fm0_A 94 -----DFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE----------YECVSVLNSH-TQDVKHVV 157 (345)
T ss_dssp ------EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC----------EEEEEEECCC-CSCEEEEE
T ss_pred -----CeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC----------eEEEEEecCc-CCCeEEEE
Confidence 0111223333344677776543 3444456789999996432100 0001111111 12355554
Q ss_pred cC--CCeEEEEECCCCEEEEe
Q 020659 184 LG--FEQSVAVTGGGKVLSWG 202 (323)
Q Consensus 184 ~g--~~~~~~l~~~g~v~~~G 202 (323)
.. ....+.-..|+.|..|-
T Consensus 158 ~~p~~~~l~s~s~d~~i~~w~ 178 (345)
T 3fm0_A 158 WHPSQELLASASYDDTVKLYR 178 (345)
T ss_dssp ECSSSSCEEEEETTSCEEEEE
T ss_pred ECCCCCEEEEEeCCCcEEEEE
Confidence 43 33555567788888884
No 134
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=30.62 E-value=2.4e+02 Score=23.67 Aligned_cols=227 Identities=12% Similarity=0.078 Sum_probs=112.4
Q ss_pred hhhhhcccccceeeeEEecccCcceEEEeeCCCCCCCCCCCCCCeece--eEeccCCCCceEEEEe-----CccceEEEE
Q 020659 15 KQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRP--VVCSAFEKHSLKALAC-----GGAHTLFLT 87 (323)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p--~~v~~~~~~~i~~v~~-----g~~~~~~lt 87 (323)
+.|....+.....|..++..+++|.+|.+-..+-=..+. ...-.| ..+...++++|+.+.. ...+.+++|
T Consensus 40 e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~---~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T 116 (307)
T 1zi0_A 40 EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATR---GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMAT 116 (307)
T ss_dssp --CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCS---SSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEE
T ss_pred CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCC---CCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEe
Confidence 344444434444333333344888888887664222221 122222 2334446677887755 233577889
Q ss_pred cCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEE--EEcCCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCccc
Q 020659 88 ETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQ--ISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVI 165 (323)
Q Consensus 88 ~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~--i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~ 165 (323)
++|.+--.-..++-.... .-.....+.. .+.++. ...+....+++|++|+++.+-..+...+|....-.
T Consensus 117 ~~G~~Krt~l~e~~~~~r-----~G~~~i~l~~-~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv--- 187 (307)
T 1zi0_A 117 ANGTVKKTVLTEFNRLRT-----AGKVAIKLVD-GDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV--- 187 (307)
T ss_dssp TTSEEEEEEGGGGTTCCT-----TCEESSCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCE---
T ss_pred CCCeEEEEEHHHhhcccc-----CCeEEEEECC-CCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCe---
Confidence 999887664433211100 0001111111 124444 33467789999999999999876655554322111
Q ss_pred ccceEecccCCceEEEEecC--CCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEE
Q 020659 166 PIPTKVECLSGIFTKQAALG--FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIA 243 (323)
Q Consensus 166 ~~p~~~~~~~~~~i~~i~~g--~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i 243 (323)
..+...++.+|+.+..- ....++++++|.+--.-...|-.-+++.. ....+. +.. ....++.+
T Consensus 188 ---~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~k----------G~~~~~-~~~-~~~~lv~~ 252 (307)
T 1zi0_A 188 ---RGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATK----------GVISIK-VTE-RNGLVVGA 252 (307)
T ss_dssp ---ECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSC----------CEESSC-CCT-TTCSEEEE
T ss_pred ---EeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCC----------CEEeeE-ecC-CCCeEEEE
Confidence 11222234467776542 23466778877654443333322222111 011111 111 11244443
Q ss_pred ec--CCCeeEEEecCCcEEEEeCCCCC
Q 020659 244 AA--GFLHSACIDENGRVYIFGDRAVD 268 (323)
Q Consensus 244 ~~--g~~~~~~lt~~g~ly~wG~n~~g 268 (323)
.. .....+++|++|.+.-.-.+...
T Consensus 253 ~~v~~~~~l~~~t~~g~~ir~~~~~i~ 279 (307)
T 1zi0_A 253 VQVDDCDQIMMITDAGTLVRTRVSEIS 279 (307)
T ss_dssp EEECTTCEEEEEESSCCEEEEEGGGSC
T ss_pred EEeCCCceEEEEcCCCcEEEEeccccc
Confidence 33 55668899999999877655543
No 135
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=30.41 E-value=3.4e+02 Score=25.39 Aligned_cols=155 Identities=11% Similarity=0.070 Sum_probs=75.9
Q ss_pred cceeeeEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEE--eCccceEEEEcCCcEEEEeCCCCc
Q 020659 24 LGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALA--CGGAHTLFLTETGCVYATGLNDFG 101 (323)
Q Consensus 24 ~~~~~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~--~g~~~~~~lt~~g~v~~~G~n~~g 101 (323)
.......+.+.+.+++|++|.... .+..-+ .. ...+...+..++ --..+.+.-++||+|-.|-....
T Consensus 93 wSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~-------~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~- 161 (588)
T 2j04_A 93 PSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SK-------GNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKN- 161 (588)
T ss_dssp ECSSSSCEEEEETTSCEEEEETTE--EEEECC-CS-------SCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCC-
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CC-------CccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCC-
Confidence 333444455555888888886321 111100 00 000111255444 44555666678899888865431
Q ss_pred cccCCCCCCceecceEe----cCCCCceEEEEcCCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCc
Q 020659 102 QLGISENIGYSLEPLRI----SGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGI 177 (323)
Q Consensus 102 qlg~~~~~~~~~~p~~~----~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~ 177 (323)
.+. +..+... ..+ ......|..|+-..+..++...|+.++.|-.....+ ......+......
T Consensus 162 ~l~---~~~~i~l-~ti~~~~~gh~~~V~sVawSPdgLaass~D~tVrlWd~~~~~~----------~~~~~tL~~~h~~ 227 (588)
T 2j04_A 162 SEN---TPEFYFE-SSIRLSDAGSKDWVTHIVWYEDVLVAALSNNSVFSMTVSASSH----------QPVSRMIQNASRR 227 (588)
T ss_dssp TTT---CCCCEEE-EEEECSCTTCCCCEEEEEEETTEEEEEETTCCEEEECCCSSSS----------CCCEEEEECCCSS
T ss_pred ccc---cccceee-eeeecccccccccEEEEEEcCCcEEEEeCCCeEEEEECCCCcc----------ccceeeecccccC
Confidence 000 0000011 111 112237888877666655667788999996532211 0111222111122
Q ss_pred eEEEEecCCCeEEEEECCCCEEEEeCC
Q 020659 178 FTKQAALGFEQSVAVTGGGKVLSWGAG 204 (323)
Q Consensus 178 ~i~~i~~g~~~~~~l~~~g~v~~~G~n 204 (323)
.|.+|+.. ...+|...+++|..|-..
T Consensus 228 ~V~svaFs-g~~LASa~~~tIkLWd~~ 253 (588)
T 2j04_A 228 KITDLKIV-DYKVVLTCPGYVHKIDLK 253 (588)
T ss_dssp CCCCEEEE-TTEEEEECSSEEEEEETT
T ss_pred cEEEEEEE-CCEEEEEeCCeEEEEECC
Confidence 35555543 256666667899999744
No 136
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=30.11 E-value=2.6e+02 Score=23.84 Aligned_cols=203 Identities=7% Similarity=-0.033 Sum_probs=89.8
Q ss_pred eEEEEeCcc--ceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcC--CCeEEEEEcCCcEEEEe
Q 020659 73 LKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYMWG 148 (323)
Q Consensus 73 i~~v~~g~~--~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G 148 (323)
|..++-... ..+.-..||.|..|-.... .....+......|..++.. ....+.-..++.+..|-
T Consensus 126 v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~------------~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd 193 (393)
T 1erj_A 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENR------------KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD 193 (393)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTT------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEECCCC------------cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEE
Confidence 555555433 3334456788888854321 1122233334466666543 33445556789999995
Q ss_pred CCCCCCCCCCCCCCcccccceEecccCCceEEEEecC---CCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccc
Q 020659 149 KNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG---FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTS 225 (323)
Q Consensus 149 ~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g---~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~ 225 (323)
... + .....+.... .+..++.. ....+.-..+|.|..|-.... ++- ..
T Consensus 194 ~~~-~------------~~~~~~~~~~--~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~-~~~-------------~~ 244 (393)
T 1erj_A 194 LRT-G------------QCSLTLSIED--GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG-FLV-------------ER 244 (393)
T ss_dssp TTT-T------------EEEEEEECSS--CEEEEEECSTTCCEEEEEETTSCEEEEETTTC-CEE-------------EE
T ss_pred CCC-C------------eeEEEEEcCC--CcEEEEEECCCCCEEEEEcCCCcEEEEECCCC-cEE-------------Ee
Confidence 421 0 0111112212 24444432 345555678899999953321 100 00
Q ss_pred cccceeecccCCCcEEEEecCCC--eeEEEecCCcEEEEeCCCCCcCCcCCCCCcCC-Ceeec-CCCCeeEEEecCC--e
Q 020659 226 EYTPRLIKELEGVKVKIAAAGFL--HSACIDENGRVYIFGDRAVDKMLFQEGNHARR-PSLIS-KLPYSEEVVCGGY--H 299 (323)
Q Consensus 226 ~~~p~~i~~~~~~~i~~i~~g~~--~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~-p~~v~-~~~~i~~v~~G~~--~ 299 (323)
...+.....-....|..++...+ ..+.-..||.|..|-................. ...+. ....|..++.... .
T Consensus 245 ~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 324 (393)
T 1erj_A 245 LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY 324 (393)
T ss_dssp EC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCE
T ss_pred ecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCE
Confidence 00000000011224666665443 34444578999999754422111000000000 01111 1223556655433 3
Q ss_pred eEEEEcCCCEEEeeCCC
Q 020659 300 TCVLTSGGELYTWGSNE 316 (323)
Q Consensus 300 ~~~l~~~g~v~~~G~n~ 316 (323)
.+.-..||+|+.|-...
T Consensus 325 l~sgs~D~~v~iwd~~~ 341 (393)
T 1erj_A 325 ILSGSKDRGVLFWDKKS 341 (393)
T ss_dssp EEEEETTSEEEEEETTT
T ss_pred EEEEeCCCeEEEEECCC
Confidence 33345788888886543
No 137
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=29.72 E-value=2.4e+02 Score=23.45 Aligned_cols=154 Identities=6% Similarity=-0.079 Sum_probs=75.6
Q ss_pred cccccceeeeEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCC--CCceEEEEeCc--cceEEEEcCCcEEEE
Q 020659 20 LGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFE--KHSLKALACGG--AHTLFLTETGCVYAT 95 (323)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~--~~~i~~v~~g~--~~~~~lt~~g~v~~~ 95 (323)
..++......++++-..++.|++|-.... .+..+..+. ...|..++-.. ...+.-..||.|..|
T Consensus 15 ~~~~~s~~g~~l~~~~~d~~i~iw~~~~~------------~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vw 82 (377)
T 3dwl_C 15 YEHAFNSQRTEFVTTTATNQVELYEQDGN------------GWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVY 82 (377)
T ss_dssp SCCEECSSSSEEECCCSSSCBCEEEEETT------------EEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC
T ss_pred EEEEECCCCCEEEEecCCCEEEEEEccCC------------ceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 33334444455666557777777765421 012222221 23466665543 345555678889888
Q ss_pred eCCCCccccCCCCCCceecceEecCCCCceEEEEcC--CCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecc
Q 020659 96 GLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVEC 173 (323)
Q Consensus 96 G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~ 173 (323)
-..... .......+......|..++.. ....+.-..++.|..|-...... ......+..
T Consensus 83 d~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----------~~~~~~~~~ 143 (377)
T 3dwl_C 83 EKRPDG---------TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND----------WWVSKHLKR 143 (377)
T ss_dssp ---------------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC---------------CCCCEEECS
T ss_pred EcCCCC---------ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccc----------ceeeeEeec
Confidence 543211 001112222334467777654 34555667789999885432110 011222222
Q ss_pred cCCceEEEEecCC--CeEEEEECCCCEEEEeCC
Q 020659 174 LSGIFTKQAALGF--EQSVAVTGGGKVLSWGAG 204 (323)
Q Consensus 174 ~~~~~i~~i~~g~--~~~~~l~~~g~v~~~G~n 204 (323)
.....|..++... ...+....+|.|..|-..
T Consensus 144 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 176 (377)
T 3dwl_C 144 PLRSTILSLDWHPNNVLLAAGCADRKAYVLSAY 176 (377)
T ss_dssp SCCSCEEEEEECTTSSEEEEEESSSCEEEEEEC
T ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEE
Confidence 1123466666543 355666888999999754
No 138
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=28.59 E-value=2.3e+02 Score=22.80 Aligned_cols=64 Identities=13% Similarity=0.159 Sum_probs=32.5
Q ss_pred eeEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecCCCCeeEEEec--CCeeEEEEcCCCEEEeeCCC
Q 020659 249 HSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCG--GYHTCVLTSGGELYTWGSNE 316 (323)
Q Consensus 249 ~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~~~~i~~v~~G--~~~~~~l~~~g~v~~~G~n~ 316 (323)
..++++.+|+||+-. + +.+-.=+.. -.....+.....+..++.+ +...+.++..+.+|.+-.+.
T Consensus 221 ~~i~~d~~G~l~v~~-~--~~v~~~~~~-g~~~~~~~~~~~~~~~~f~~~d~~~L~v~t~~~l~~~~~~~ 286 (296)
T 3e5z_A 221 DGLRVDAGGLIWASA-G--DGVHVLTPD-GDELGRVLTPQTTSNLCFGGPEGRTLYMTVSTEFWSIETNV 286 (296)
T ss_dssp CSEEEBTTSCEEEEE-T--TEEEEECTT-SCEEEEEECSSCCCEEEEESTTSCEEEEEETTEEEEEECSC
T ss_pred CeEEECCCCCEEEEc-C--CeEEEECCC-CCEEEEEECCCCceeEEEECCCCCEEEEEcCCeEEEEEccc
Confidence 457778888888766 1 111110000 0011222222225666663 33567777777888776543
No 139
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=28.17 E-value=2.3e+02 Score=22.69 Aligned_cols=136 Identities=10% Similarity=-0.029 Sum_probs=68.4
Q ss_pred cCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeCccc--eEEEEcCCcEEEEeCCCCccccCCCCCCce
Q 020659 35 LQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAH--TLFLTETGCVYATGLNDFGQLGISENIGYS 112 (323)
Q Consensus 35 ~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g~~~--~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~ 112 (323)
..|+.|++|=..+ |+ ........ -....|..|+..... .+.-..||.|..|-....
T Consensus 42 g~D~tV~iWd~~t-g~--------~~~~~~~~-~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~------------ 99 (318)
T 4ggc_A 42 ALDNSVYLWSASS-GD--------ILQLLQME-QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ------------ 99 (318)
T ss_dssp EETTEEEEEETTT-CC--------EEEEEECC-STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT------------
T ss_pred EeCCEEEEEECCC-CC--------EEEEEEec-CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc------------
Confidence 3688899996442 11 00001111 112346666665433 344467889999965322
Q ss_pred ecceEecCCCCceEEEEcCCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEecCCCeEEEE
Q 020659 113 LEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAV 192 (323)
Q Consensus 113 ~~p~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~~~~l 192 (323)
.....+......+..++......+.-..++.+..|-..... .......................+.+.-
T Consensus 100 ~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 168 (318)
T 4ggc_A 100 KRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAE-----------HHVATLSGHSQEVCGLRWAPDGRHLASG 168 (318)
T ss_dssp EEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSS-----------CEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred eeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCc-----------eeEEEEcCccCceEEEEEcCCCCEEEEE
Confidence 11222233333566666656666666677777777543211 0111111111222233444445566677
Q ss_pred ECCCCEEEEeC
Q 020659 193 TGGGKVLSWGA 203 (323)
Q Consensus 193 ~~~g~v~~~G~ 203 (323)
..||.|..|-.
T Consensus 169 ~~d~~i~iwd~ 179 (318)
T 4ggc_A 169 GNDNLVNVWPS 179 (318)
T ss_dssp ETTSCEEEEES
T ss_pred ecCcceeEEEC
Confidence 88999999954
No 140
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=27.46 E-value=2.8e+02 Score=23.34 Aligned_cols=191 Identities=13% Similarity=0.056 Sum_probs=91.8
Q ss_pred ceEEEEeC-ccceEEEEcCCcEEEEeCCCCccccCCCCCCceecceEecCCCCceEEEEcCC--CeEEEEEcCCcEEEEe
Q 020659 72 SLKALACG-GAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY--HHSSAITVDGELYMWG 148 (323)
Q Consensus 72 ~i~~v~~g-~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~~G 148 (323)
.|..++-. ....+.-..||.|..|-..... ...............|..++... ...+.-..+|.|..|-
T Consensus 84 ~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~--------~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd 155 (344)
T 4gqb_B 84 GVADLTWVGERGILVASDSGAVELWELDENE--------TLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD 155 (344)
T ss_dssp CEEEEEEETTTEEEEEETTSEEEEEEECTTS--------SCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CEEEEEEeCCCeEEEEECCCEEEEEeccCCC--------ceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 36666543 3344455678889888543211 11111111222334677766543 3444456789999995
Q ss_pred CCCCCCCCCCCCCCcccccceEecccCCceEEEEecCCC---eEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccc
Q 020659 149 KNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFE---QSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTS 225 (323)
Q Consensus 149 ~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~---~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~ 225 (323)
.... .....+... ...|..++.... ..+.-..||.|..|-.... +
T Consensus 156 ~~~~-------------~~~~~~~~h-~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~-~----------------- 203 (344)
T 4gqb_B 156 LAQQ-------------VVLSSYRAH-AAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP-K----------------- 203 (344)
T ss_dssp TTTT-------------EEEEEECCC-SSCEEEEEECSSCTTEEEEEETTSCEEEEETTSS-S-----------------
T ss_pred CCCC-------------cEEEEEcCc-CCceEEEEecCCCCCceeeecccccccccccccc-c-----------------
Confidence 4310 001111111 224666665432 3444578899999943211 0
Q ss_pred cccceeec-ccCCCcEEEEecCCC--eeE-EEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecC-CCCeeEEEecCC--
Q 020659 226 EYTPRLIK-ELEGVKVKIAAAGFL--HSA-CIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK-LPYSEEVVCGGY-- 298 (323)
Q Consensus 226 ~~~p~~i~-~~~~~~i~~i~~g~~--~~~-~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~-~~~i~~v~~G~~-- 298 (323)
....+. ......+..++.... ..+ .-..||.|..|-...... ...+.. ...|..|+....
T Consensus 204 --~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~-----------~~~~~~h~~~v~~v~fsp~g~ 270 (344)
T 4gqb_B 204 --PASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC-----------VLSSAVHSQCVTGLVFSPHSV 270 (344)
T ss_dssp --CEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C-----------CEEEECCSSCEEEEEECSSSS
T ss_pred --eeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcE-----------EEEEcCCCCCEEEEEEccCCC
Confidence 001111 111223555554432 223 336788999996443111 122222 224677776532
Q ss_pred -eeEEEEcCCCEEEeeCC
Q 020659 299 -HTCVLTSGGELYTWGSN 315 (323)
Q Consensus 299 -~~~~l~~~g~v~~~G~n 315 (323)
..+.-..||+|..|-.+
T Consensus 271 ~~lasgs~D~~i~vwd~~ 288 (344)
T 4gqb_B 271 PFLASLSEDCSLAVLDSS 288 (344)
T ss_dssp CCEEEEETTSCEEEECTT
T ss_pred eEEEEEeCCCeEEEEECC
Confidence 23334578888888543
No 141
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=26.72 E-value=2.6e+02 Score=22.79 Aligned_cols=124 Identities=10% Similarity=0.071 Sum_probs=69.3
Q ss_pred EEcCCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEecC--CCeEEEEECCCCEEEEeCCC
Q 020659 128 ISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG--FEQSVAVTGGGKVLSWGAGG 205 (323)
Q Consensus 128 i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g--~~~~~~l~~~g~v~~~G~n~ 205 (323)
.+.+.++.+++|+.|++|..-..+.... . . .-.+....+...++.+|+.+... ..+.+++|++|.+.-.-..+
T Consensus 40 ~~~t~~~ll~~T~~Gr~~~~~~~elp~~---r-~-~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e 114 (256)
T 1zvt_A 40 KGKSNQPVVFVDSTGRSYAIDPITLPSA---R-G-QGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFND 114 (256)
T ss_dssp EEETTSCEEEEETTSEEEEECGGGSCCS---S-S-CCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGG
T ss_pred EeCCCCEEEEEeCCCeEEEEEHHHCCCc---C-C-CCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHH
Confidence 3456778899999999999876543111 1 1 11112223333445678888663 34577789999877665443
Q ss_pred CCCcCCCCCCCccccccccccccceeeccc-CCCcEEEE--e-cCCCeeEEEecCCcEEEEeCCCCCcCCc
Q 020659 206 SGRLGHGQESSILGFLRSTSEYTPRLIKEL-EGVKVKIA--A-AGFLHSACIDENGRVYIFGDRAVDKMLF 272 (323)
Q Consensus 206 ~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~-~~~~i~~i--~-~g~~~~~~lt~~g~ly~wG~n~~gqlg~ 272 (323)
+-...++. ..+-.+ ++..++.+ . .+..+.+++|++|.+..+-.++.-.+|.
T Consensus 115 ~~~~~r~G----------------~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~ei~~~gR 169 (256)
T 1zvt_A 115 LVARNRAG----------------KALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 169 (256)
T ss_dssp GCCCSTTC----------------EECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEGGGSCBCSS
T ss_pred hcccCcCc----------------eEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHHCCCcCc
Confidence 31111100 011011 11222222 2 3567889999999999888766545443
No 142
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=26.60 E-value=2.6e+02 Score=22.77 Aligned_cols=153 Identities=8% Similarity=-0.041 Sum_probs=78.4
Q ss_pred EEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEE--EecCCCeEEEEECCCCEEEEeCCCCCCcCCC
Q 020659 135 SSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQ--AALGFEQSVAVTGGGKVLSWGAGGSGRLGHG 212 (323)
Q Consensus 135 ~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~--i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~ 212 (323)
.+.+|++|.+-......++- ..+...++..++. .+.+.++.+++|++|++|-+-....=. ++
T Consensus 5 ~v~lT~~G~iKr~~~~~~~~--------------~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~-~r- 68 (256)
T 1zvt_A 5 TIVLSQMGWVRSAKGHDIDA--------------PGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS-AR- 68 (256)
T ss_dssp EEEEETTSEEEEEESSCCCS--------------TTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCC-SS-
T ss_pred EEEEeCCCEEEEeeCCcCCc--------------eeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCC-cC-
Confidence 56788888876654332210 0011112223433 344566889999999999886433200 00
Q ss_pred CCCCccccccccccccceeecccCCCcEEEEecC--CCeeEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecCCCCe
Q 020659 213 QESSILGFLRSTSEYTPRLIKELEGVKVKIAAAG--FLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYS 290 (323)
Q Consensus 213 ~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~~~~i 290 (323)
....+....++..++++|+.+... ..+.+++|++|.+.-.-..++-....+. ..-..+...+.+
T Consensus 69 ----------~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G----~~~i~L~~~d~l 134 (256)
T 1zvt_A 69 ----------GQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAG----KALITLPENAHV 134 (256)
T ss_dssp ----------SCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTC----EECBCCCTTCCB
T ss_pred ----------CCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCc----eEEEEECCCCEE
Confidence 011111112333345678887663 3346778899987766544331110000 001111112233
Q ss_pred eEE--E-ecCCeeEEEEcCCCEEEeeCCCC
Q 020659 291 EEV--V-CGGYHTCVLTSGGELYTWGSNEN 317 (323)
Q Consensus 291 ~~v--~-~G~~~~~~l~~~g~v~~~G~n~~ 317 (323)
+.+ . .+..+.++++++|.+..+-.++-
T Consensus 135 v~~~~~~~~~~~i~l~T~~G~~lrf~~~ei 164 (256)
T 1zvt_A 135 MPPVVIEDASDMLLAITQAGRMLMFPVSDL 164 (256)
T ss_dssp CCCEECCCTTCEEEEEETTSEEEEEEGGGS
T ss_pred EEEEEecCCCCEEEEEcCCCeEEEEEHHHC
Confidence 322 2 36778999999999887765543
No 143
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=24.17 E-value=2.9e+02 Score=22.47 Aligned_cols=63 Identities=13% Similarity=0.215 Sum_probs=31.2
Q ss_pred CCCeeEEEecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecCCCCeeEEEecC-CeeEEEEcCCCEEEe
Q 020659 246 GFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGG-YHTCVLTSGGELYTW 312 (323)
Q Consensus 246 g~~~~~~lt~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~~~~i~~v~~G~-~~~~~l~~~g~v~~~ 312 (323)
+.-..++++.+|+||+-..+ + +-.=+. .-.....+.....+..++.+. ...+.++..+.||..
T Consensus 239 ~~pdgi~~d~~G~lwv~~~~--g-v~~~~~-~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 239 GLPDGFCVDRGGWLWSSSGT--G-VCVFDS-DGQLLGHIPTPGTASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp SCCCSEEECTTSCEEECCSS--E-EEEECT-TSCEEEEEECSSCCCEEEECTTSCEEEEEETTEEEEE
T ss_pred CCCCeEEECCCCCEEEecCC--c-EEEECC-CCCEEEEEECCCceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 44456888899998874421 1 110000 001112222223455666653 346667766677754
No 144
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=20.60 E-value=3.6e+02 Score=22.24 Aligned_cols=182 Identities=10% Similarity=-0.008 Sum_probs=82.9
Q ss_pred EEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeC--ccceEEEEcCCcEEEEeCCCCccccCCC
Q 020659 30 WISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG--GAHTLFLTETGCVYATGLNDFGQLGISE 107 (323)
Q Consensus 30 ~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g--~~~~~~lt~~g~v~~~G~n~~gqlg~~~ 107 (323)
++++-..|+.|..|-....- ....+.. ....|..++-. ....+.-..|+.+..|-.....
T Consensus 69 ~l~s~s~Dg~v~iWd~~~~~-----------~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~------ 130 (340)
T 1got_B 69 LLLSASQDGKLIIWDSYTTN-----------KVHAIPL-RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE------ 130 (340)
T ss_dssp EEEEEETTTEEEEEETTTCC-----------EEEEEEC-SSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCS------
T ss_pred EEEEEeCCCcEEEEECCCCC-----------cceEeec-CCccEEEEEECCCCCEEEEEeCCCeEEEEECccCC------
Confidence 45555577777777543210 1111111 12234444333 2333444567777777543210
Q ss_pred CCCceecceEecCCCCceEEEEc-CCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceEEEEecCC
Q 020659 108 NIGYSLEPLRISGLKKEVVQIST-GYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF 186 (323)
Q Consensus 108 ~~~~~~~p~~~~~~~~~i~~i~~-g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~ 186 (323)
........+......|..+.. .....+.-..++.|..|-.... .....+... ...|..++...
T Consensus 131 --~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~-------------~~~~~~~~h-~~~v~~~~~~~ 194 (340)
T 1got_B 131 --GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG-------------QQTTTFTGH-TGDVMSLSLAP 194 (340)
T ss_dssp --BSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTT-------------EEEEEECCC-SSCEEEEEECT
T ss_pred --CcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCC-------------cEEEEEcCC-CCceEEEEECC
Confidence 001112222223334444432 2233455567888888854311 001111111 12355555543
Q ss_pred C--eEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCCC--eeEEEecCCcEEEE
Q 020659 187 E--QSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFL--HSACIDENGRVYIF 262 (323)
Q Consensus 187 ~--~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~--~~~~lt~~g~ly~w 262 (323)
+ ..+.-..||.|..|-.... + ....+.. ....|..++...+ ..+.-..||.|..|
T Consensus 195 ~~~~l~sg~~d~~v~~wd~~~~-~-------------------~~~~~~~-h~~~v~~v~~~p~~~~l~s~s~d~~v~iw 253 (340)
T 1got_B 195 DTRLFVSGACDASAKLWDVREG-M-------------------CRQTFTG-HESDINAICFFPNGNAFATGSDDATCRLF 253 (340)
T ss_dssp TSSEEEEEETTSCEEEEETTTC-S-------------------EEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CCCEEEEEeCCCcEEEEECCCC-e-------------------eEEEEcC-CcCCEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence 3 4455577889999853211 0 0011111 1224666665433 34444578889999
Q ss_pred eCCC
Q 020659 263 GDRA 266 (323)
Q Consensus 263 G~n~ 266 (323)
-...
T Consensus 254 d~~~ 257 (340)
T 1got_B 254 DLRA 257 (340)
T ss_dssp ETTT
T ss_pred ECCC
Confidence 7544
Done!