BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>020660
MTSTRIVFSNGVVSQASDTPSVSTFLQERRGAYTTTRTHNNGSCLLFWERHLRRLASSAR
ILYNSSPNLLFKSPTPSGLEPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDG
EELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLALVGRG
RDVAEAKYSDWVRLRKPLEKLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDK
FLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFI
TSKYSSSFDLIAQKRFAYLLQMI

High Scoring Gene Products

Symbol, full name Information P value
AT3G54970 protein from Arabidopsis thaliana 1.4e-73
CBU_0418
4-amino-4-deoxychorismate lyase, putative
protein from Coxiella burnetii RSA 493 0.00057

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  020660
        (323 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2082722 - symbol:AT3G54970 species:3702 "Arabi...   743  1.4e-73   1
TIGR_CMR|CBU_0418 - symbol:CBU_0418 "4-amino-4-deoxychori...    88  0.00057   2


>TAIR|locus:2082722 [details] [associations]
            symbol:AT3G54970 species:3702 "Arabidopsis thaliana"
            [GO:0003824 "catalytic activity" evidence=IEA] [GO:0008152
            "metabolic process" evidence=IEA] [GO:0009507 "chloroplast"
            evidence=ISM] InterPro:IPR001544 Pfam:PF01063 EMBL:CP002686
            GO:GO:0008483 PANTHER:PTHR11825 SUPFAM:SSF56752 EMBL:AY063983
            EMBL:AY114026 IPI:IPI00539578 RefSeq:NP_567011.1 UniGene:At.27120
            ProteinModelPortal:Q8VZN6 PRIDE:Q8VZN6 EnsemblPlants:AT3G54970.1
            GeneID:824662 KEGG:ath:AT3G54970 TAIR:At3g54970 InParanoid:Q8VZN6
            OMA:AKYSDWV PhylomeDB:Q8VZN6 ProtClustDB:CLSN2689169
            ArrayExpress:Q8VZN6 Genevestigator:Q8VZN6 Uniprot:Q8VZN6
        Length = 353

 Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
 Identities = 172/306 (56%), Positives = 206/306 (67%)

Query:     1 MTSTRIVFSNGVVSQASDTPSVSTFLQERRGAYTTTRTHNNGSCLLFWERHLRRLASSAR 60
             M++ R ++ NGVV +A   P V+TFL+   GAYTTTRT NNG+  LFWERH++RL+SS R
Sbjct:     1 MSNCRFLYHNGVVLEA---PPVTTFLESHTGAYTTTRTINNGTSFLFWERHMKRLSSSIR 57

Query:    61 ILYNSSPNLLFKSPTPSGLEPIRTPXXXXXXXXXXXXXXXLVNDSMNEALP-IALKE--R 117
             IL  S+P LLF S +        +P                VN SM+EAL  + +KE  R
Sbjct:    58 ILLKSNPELLFSSGS--------SPRFWMNQPVPGSSIYDRVNGSMSEALKSVVVKESER 109

Query:   118 RDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPF-VFGVEGTGARLAL 176
               GEELAVTVLV+G+  KL+ ++   + DFL   DV +H   Y P    GV    A LAL
Sbjct:   110 LYGEELAVTVLVTGNVEKLNRLDVGNNWDFL---DVWLHIGAYSPLGPLGVGENAASLAL 166

Query:   177 VGRGRDVAEAKYSDWVRLRKPLEKLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSE 236
             VGRGRDVA AKYSDWVRLRKPLEK RPP  TELLLSNDGD LLEG ITNFFVVCR+  S 
Sbjct:   167 VGRGRDVAAAKYSDWVRLRKPLEKFRPPLTTELLLSNDGDHLLEGCITNFFVVCRRVKS- 225

Query:   237 AEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWK 296
             +E+ +  + +    FEVQTAPI+DGVL GVIR LVIEVC S+GIP RE A SWS+ ELW+
Sbjct:   226 SENLYGGSLSE---FEVQTAPITDGVLAGVIRDLVIEVCLSEGIPYRERAPSWSERELWE 282

Query:   297 EAFITS 302
             EAFITS
Sbjct:   283 EAFITS 288


>TIGR_CMR|CBU_0418 [details] [associations]
            symbol:CBU_0418 "4-amino-4-deoxychorismate lyase,
            putative" species:227377 "Coxiella burnetii RSA 493" [GO:0006760
            "folic acid-containing compound metabolic process" evidence=ISS]
            [GO:0008696 "4-amino-4-deoxychorismate lyase activity"
            evidence=ISS] InterPro:IPR001544 InterPro:IPR018300 Pfam:PF01063
            PROSITE:PS00770 EMBL:AE016828 GenomeReviews:AE016828_GR
            GO:GO:0052656 GO:GO:0052654 GO:GO:0052655 PANTHER:PTHR11825
            SUPFAM:SSF56752 KO:K00826 HOGENOM:HOG000276707 HSSP:P00510
            RefSeq:NP_819456.1 ProteinModelPortal:Q83EA8 GeneID:1208302
            KEGG:cbu:CBU_0418 PATRIC:17929523 OMA:DQWLLIN
            ProtClustDB:CLSK914053 BioCyc:CBUR227377:GJ7S-417-MONOMER
            Uniprot:Q83EA8
        Length = 281

 Score = 88 (36.0 bits), Expect = 0.00057, Sum P(2) = 0.00057
 Identities = 15/33 (45%), Positives = 24/33 (72%)

Query:   252 EVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRE 284
             ++ T  I DG+LPG++RQ+VI++     IPI+E
Sbjct:   190 KIFTPKIEDGLLPGIVRQIVIDIATKTDIPIKE 222

 Score = 64 (27.6 bits), Expect = 0.00057, Sum P(2) = 0.00057
 Identities = 21/63 (33%), Positives = 35/63 (55%)

Query:     5 RIVFSNGVVSQASDTPSVST----FLQERRGAYTTTRTHNNGSCLLFWERHLRRLASSAR 60
             +I+F+  ++S  +DTP + +    FL    G + T +   N   LLF+  H  RLA+SA+
Sbjct:     2 KIIFNKKILS--ADTPIIYSNDRGFLFGD-GLFETIKAEKNE--LLFFAEHYNRLATSAK 56

Query:    61 ILY 63
              L+
Sbjct:    57 KLF 59


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.134   0.392    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      323       308   0.00078  116 3  11 22  0.40    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  616 (65 KB)
  Total size of DFA:  219 KB (2121 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.47u 0.08s 24.55t   Elapsed:  00:00:02
  Total cpu time:  24.47u 0.08s 24.55t   Elapsed:  00:00:02
  Start:  Mon May 20 15:34:22 2013   End:  Mon May 20 15:34:24 2013

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