BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020660
(323 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O14370|BCA1_SCHPO Branched-chain-amino-acid aminotransferase, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=eca39 PE=1 SV=3
Length = 427
Score = 38.9 bits (89), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 14/73 (19%)
Query: 209 LLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIR 268
L L D D + E N F V N E E + TAP+ +LPGV R
Sbjct: 280 LWLYGDEDYITEVGTMNCFTVWINKNGEKE--------------IITAPLDGMILPGVTR 325
Query: 269 QLVIEVCRSKGIP 281
++E+CR + P
Sbjct: 326 DSILEICRERLAP 338
>sp|Q67MT5|RF3_SYMTH Peptide chain release factor 3 OS=Symbiobacterium thermophilum
(strain T / IAM 14863) GN=prfC PE=3 SV=2
Length = 528
Score = 38.1 bits (87), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 15/115 (13%)
Query: 169 GTGARLALVGRGRDVAEAKYSDWVRLRKPLEKLRPPSVTELLLSNDGDQLLEGSITNFF- 227
G RLA +GR A A SDW+ +EK R SVT ++ + G + N
Sbjct: 35 GGAIRLAGAVKGRKAARAATSDWME----IEKQRGISVTTSVMQFE----YGGCMVNILD 86
Query: 228 VVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPI 282
+D SE + L+ +++ V + GV P I+ + +VCR +GIPI
Sbjct: 87 TPGHQDFSEDTYRTLEAADSA----VMLIDAAKGVEPQTIK--LFQVCRMRGIPI 135
>sp|Q92I26|ILVE_RICCN Probable branched-chain-amino-acid aminotransferase OS=Rickettsia
conorii (strain ATCC VR-613 / Malish 7) GN=ilvE PE=3
SV=1
Length = 290
Score = 36.2 bits (82), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 21/93 (22%)
Query: 209 LLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIR 268
LLL +G + E + TN F V +DK L T PI+D L G+ R
Sbjct: 179 LLLDYEG-YIAECTTTNIFFV--------KDKILYT------------PIADRFLNGITR 217
Query: 269 QLVIEVCRSKGIPIRELASSWSQHELWKEAFIT 301
Q +IE+ + G+ ++E Q E + F+T
Sbjct: 218 QTIIEIAKDLGLEVKEERLKLEQIEDFTGCFVT 250
>sp|Q4ULR3|ILVE_RICFE Probable branched-chain-amino-acid aminotransferase OS=Rickettsia
felis (strain ATCC VR-1525 / URRWXCal2) GN=ilvE PE=3
SV=1
Length = 290
Score = 35.4 bits (80), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 241 FLQTCNNSHSFEVQT----APISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWK 296
++ C ++ F V+ PI+D L G+ RQ +IE+ + G+ ++E Q E +
Sbjct: 186 YIAECTTTNIFFVKDKTLYTPIADRFLNGITRQTIIEIAKDLGLEVKEERLKLEQIENFT 245
Query: 297 EAFIT 301
F+T
Sbjct: 246 GCFVT 250
>sp|Q92B90|DAAA_LISIN D-alanine aminotransferase OS=Listeria innocua serovar 6a (strain
CLIP 11262) GN=dat PE=3 SV=1
Length = 289
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 262 VLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITS 302
+L G+ RQ++I+V + GIP++E + + E FI+S
Sbjct: 202 ILNGITRQVIIDVAKKNGIPVKEADFTLTDLREADEVFISS 242
>sp|P0DJL9|DAAA_LISMO D-alanine aminotransferase OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=dat PE=3 SV=1
Length = 289
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 262 VLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITS 302
+L G+ RQ++I+V + GIP++E + + E FI+S
Sbjct: 202 ILNGITRQVIIDVAKKNGIPVKEADFTLTDLREADEVFISS 242
>sp|G2JZ74|DAAA_LISM4 D-alanine aminotransferase OS=Listeria monocytogenes serotype 1/2a
(strain 10403S) GN=dat PE=3 SV=1
Length = 289
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 262 VLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITS 302
+L G+ RQ++I+V + GIP++E + + E FI+S
Sbjct: 202 ILNGITRQVIIDVAKKNGIPVKEADFTLTDLREADEVFISS 242
>sp|Q1RIJ2|ILVE_RICBR Probable branched-chain-amino-acid aminotransferase OS=Rickettsia
bellii (strain RML369-C) GN=ilvE PE=3 SV=1
Length = 289
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 241 FLQTCNNSHSFEVQT----APISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWK 296
++ C ++ F V+ PI+D L G+ RQ +IE+ ++ G+ ++E Q E +
Sbjct: 185 YIAECTTTNIFFVKDNVLYTPIADRFLDGITRQTIIEIAKNLGLEVKEERLKLEQIEDFI 244
Query: 297 EAFIT 301
F T
Sbjct: 245 SCFAT 249
>sp|O05970|ILVE_RICPR Probable branched-chain-amino-acid aminotransferase OS=Rickettsia
prowazekii (strain Madrid E) GN=ilvE PE=3 SV=1
Length = 290
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 241 FLQTCNNSHSFEVQT----APISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWK 296
F+ C ++ F V+ PI+D L G+ R+ +IE+ +S + ++E +Q E +
Sbjct: 186 FIAECTTTNIFFVKDKTLYTPIADRFLNGITRKTIIEIAKSLCLEVKEERLKLAQIEHFT 245
Query: 297 EAFIT 301
F+T
Sbjct: 246 GCFVT 250
>sp|Q9AKE5|ILVE_RICTY Probable branched-chain-amino-acid aminotransferase OS=Rickettsia
typhi (strain ATCC VR-144 / Wilmington) GN=ilvE PE=3
SV=1
Length = 288
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 241 FLQTCNNSHSFEVQTA----PISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWK 296
F+ C ++ F V+ PI+D L G+ R+ +IE+ ++ + ++E +Q E +
Sbjct: 184 FIAECTTTNIFFVKDTTLYTPIADRFLNGITRKTIIEIAKNLCLEVKEERLKLAQIEYFT 243
Query: 297 EAFIT 301
F+T
Sbjct: 244 GCFVT 248
>sp|O31461|ILVE1_BACSU Branched-chain-amino-acid transaminase 1 OS=Bacillus subtilis
(strain 168) GN=ilvE PE=1 SV=1
Length = 356
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 238 EDKFLQTCNNSHSF-----EVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRE 284
E K+++ + + F E T +S +L GV R IE+ RS GIP+RE
Sbjct: 227 EKKYVEEVGSMNIFFVINGEAVTPALSGSILSGVTRASAIELIRSWGIPVRE 278
>sp|Q9LE06|BCAT4_ARATH Methionine aminotransferase BCAT4 OS=Arabidopsis thaliana GN=BCAT4
PE=1 SV=1
Length = 354
Score = 32.7 bits (73), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 24/53 (45%)
Query: 253 VQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYS 305
V T I+ +LPGV R V+E+CR G + E EAF T S
Sbjct: 248 VSTPTIAGTILPGVTRNCVMELCRDFGYQVEERTIPLVDFLDADEAFCTGTAS 300
>sp|Q9FYA6|BCAT5_ARATH Branched-chain-amino-acid aminotransferase 5, chloroplastic
OS=Arabidopsis thaliana GN=BCAT5 PE=1 SV=1
Length = 415
Score = 32.3 bits (72), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 253 VQTAPISDGVLPGVIRQLVIEVCRSKGIPIRE 284
+ T I +LPG+ R+ +IEV RS+G + E
Sbjct: 311 ISTPEIKGTILPGITRKSIIEVARSQGFKVEE 342
>sp|Q8DI46|AMPA_THEEB Probable cytosol aminopeptidase OS=Thermosynechococcus elongatus
(strain BP-1) GN=pepA PE=3 SV=1
Length = 497
Score = 32.0 bits (71), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 97 MIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVH 156
+ + LVN NE P+ L E ++LA T ++ + +G FLGV S
Sbjct: 183 LARELVNAPANEVTPVTLAET--AQQLAATYGLTAKILEREDCGALGMGAFLGVAQASDL 240
Query: 157 FSGYVPFVFGVEGTGAR-LALVGRG 180
++ + GT R +ALVG+G
Sbjct: 241 PPKFIHLTYTSPGTVHRKIALVGKG 265
>sp|P0A1A5|ILVE_SALTY Branched-chain-amino-acid aminotransferase OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=ilvE PE=1 SV=2
Length = 309
Score = 31.6 bits (70), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 251 FEVQ-----TAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITS 302
FEV+ T P + LPG+ R +I++ + GI +RE S L E F++
Sbjct: 201 FEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSG 257
>sp|P0A1A6|ILVE_SALTI Branched-chain-amino-acid aminotransferase OS=Salmonella typhi
GN=ilvE PE=3 SV=2
Length = 309
Score = 31.6 bits (70), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 251 FEVQ-----TAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITS 302
FEV+ T P + LPG+ R +I++ + GI +RE S L E F++
Sbjct: 201 FEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSG 257
>sp|P0AB80|ILVE_ECOLI Branched-chain-amino-acid aminotransferase OS=Escherichia coli
(strain K12) GN=ilvE PE=1 SV=2
Length = 309
Score = 31.6 bits (70), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 251 FEVQ-----TAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITS 302
FEV+ T P + LPG+ R +I++ + GI +RE S L E F++
Sbjct: 201 FEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSG 257
>sp|P0AB81|ILVE_ECOL6 Branched-chain-amino-acid aminotransferase OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ilvE PE=3
SV=2
Length = 309
Score = 31.6 bits (70), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 251 FEVQ-----TAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITS 302
FEV+ T P + LPG+ R +I++ + GI +RE S L E F++
Sbjct: 201 FEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSG 257
>sp|P0AB82|ILVE_ECO57 Branched-chain-amino-acid aminotransferase OS=Escherichia coli
O157:H7 GN=ilvE PE=3 SV=2
Length = 309
Score = 31.6 bits (70), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 251 FEVQ-----TAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITS 302
FEV+ T P + LPG+ R +I++ + GI +RE S L E F++
Sbjct: 201 FEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSG 257
>sp|P54692|DAAA_BACLI D-alanine aminotransferase OS=Bacillus licheniformis GN=dat PE=3
SV=1
Length = 283
Score = 31.6 bits (70), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 20/104 (19%)
Query: 199 EKLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPI 258
+K + S E +L DG + EG+ +N +V K N + T P+
Sbjct: 156 QKAQEASAFEAILIRDG-LVTEGTSSNVYVA--KQNV-----------------IYTHPV 195
Query: 259 SDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITS 302
+ +L G+ R V+++C G+ E A + + E FITS
Sbjct: 196 TTLILNGITRMKVLQLCEENGLNYEEKAVTKDELLNADEVFITS 239
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,454,056
Number of Sequences: 539616
Number of extensions: 5054461
Number of successful extensions: 12758
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 12742
Number of HSP's gapped (non-prelim): 24
length of query: 323
length of database: 191,569,459
effective HSP length: 117
effective length of query: 206
effective length of database: 128,434,387
effective search space: 26457483722
effective search space used: 26457483722
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)