Query 020660
Match_columns 323
No_of_seqs 203 out of 1144
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 06:19:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020660.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020660hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3daa_A D-amino acid aminotrans 100.0 3.2E-50 1.1E-54 376.3 24.8 245 6-315 2-253 (277)
2 1i2k_A 4-amino-4-deoxychorisma 100.0 2.4E-48 8.3E-53 361.6 27.5 240 6-315 1-249 (269)
3 3lul_A 4-amino-4-deoxychorisma 100.0 2.8E-48 9.5E-53 362.3 26.6 239 5-315 4-250 (272)
4 3u0g_A Putative branched-chain 100.0 1.6E-48 5.4E-53 373.0 24.9 251 4-315 28-291 (328)
5 1iye_A Branched-chain amino ac 100.0 2.2E-48 7.5E-53 368.6 25.0 252 4-315 6-270 (309)
6 3sno_A Hypothetical aminotrans 100.0 2.6E-48 8.8E-53 369.6 25.1 246 4-315 14-294 (315)
7 2eiy_A ILVE, branched-chain am 100.0 1.7E-47 5.8E-52 362.4 28.0 251 4-315 5-268 (308)
8 2xpf_A 4-amino-4-deoxychorisma 100.0 1.5E-47 5.1E-52 360.7 27.2 241 5-315 22-270 (292)
9 4dqn_A Putative branched-chain 100.0 2E-46 7E-51 360.6 23.6 249 8-315 34-301 (345)
10 3dth_A Branched-chain amino ac 100.0 5.8E-44 2E-48 346.1 25.7 255 6-314 52-329 (372)
11 2a1h_A Branched chain aminotra 100.0 6.7E-44 2.3E-48 345.5 25.2 257 6-314 46-324 (365)
12 3uzo_A Branched-chain-amino-ac 100.0 5.2E-44 1.8E-48 345.2 21.0 251 8-314 49-315 (358)
13 3csw_A BCAT, putative branched 100.0 7.8E-44 2.7E-48 334.3 20.6 229 8-315 18-252 (285)
14 2coi_A Branched chain aminotra 100.0 4.5E-43 1.5E-47 341.8 25.0 256 6-314 66-344 (386)
15 2zgi_A Putative 4-amino-4-deox 100.0 1.9E-43 6.5E-48 324.9 20.2 219 6-314 1-229 (246)
16 3dtg_A Branched-chain amino ac 100.0 1.3E-42 4.6E-47 337.1 24.0 256 7-314 53-329 (372)
17 3qqm_A MLR3007 protein; struct 100.0 2.7E-40 9.3E-45 299.6 23.3 199 28-311 14-219 (221)
18 3ceb_A D-aminoacid aminotransf 100.0 6.7E-37 2.3E-41 271.5 18.2 192 27-307 2-194 (194)
19 3mcb_B Transcription factor BT 48.9 16 0.00054 25.4 3.3 28 204-232 5-41 (58)
20 3lkx_A Transcription factor BT 47.5 16 0.00054 26.1 3.2 28 204-232 5-41 (66)
21 2kyr_A Fructose-like phosphotr 42.8 26 0.00089 27.5 4.1 45 260-304 16-70 (111)
22 2r4q_A Phosphotransferase syst 33.4 1.1E+02 0.0039 23.5 6.4 59 253-317 7-75 (106)
23 2r48_A Phosphotransferase syst 32.0 1.1E+02 0.0036 23.7 6.0 59 253-317 7-75 (106)
24 2m1z_A LMO0427 protein; homolo 27.2 67 0.0023 24.8 4.1 51 253-304 7-67 (106)
25 2bmv_A Flavodoxin; electron tr 23.8 90 0.0031 24.9 4.6 46 264-310 12-62 (164)
26 3tql_A Arginine-binding protei 21.0 1.1E+02 0.0037 24.5 4.6 35 260-294 21-55 (227)
27 2qho_B E3 ubiquitin-protein li 20.4 22 0.00075 23.8 0.1 24 260-283 17-40 (53)
No 1
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase; HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB: 4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A* 2dab_A*
Probab=100.00 E-value=3.2e-50 Score=376.34 Aligned_cols=245 Identities=16% Similarity=0.147 Sum_probs=206.3
Q ss_pred EEEECCeeecCCCCCccCccccC---cCeeEEEEEEEcCCccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCCCC
Q 020660 6 IVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPI 82 (323)
Q Consensus 6 ~~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~~~~~ 82 (323)
++|+||+++ |.+++.+++.|++ |||+|||||+++| ++|+|++|++||.+||+.|+|+.
T Consensus 2 ~~~~nG~~~-~~~~~~i~~~d~g~~yGdgvFEtir~~~g--~~f~l~~Hl~RL~~Sa~~l~i~~---------------- 62 (277)
T 3daa_A 2 YTLWNDQIV-KDEEVKIDKEDRGYQFGDGVYEVVKVYNG--EMFTVNEHIDRLYASAEKIRITI---------------- 62 (277)
T ss_dssp EEEETTEEE-EGGGCCBCTTBHHHHTCCEEEEEEEEETT--EETTHHHHHHHHHHHHHHTTCCC----------------
T ss_pred EEEECCEEe-EhHHCeechhhhHHhcccEEEEEEEEECC--EEcCHHHHHHHHHHHHHhcCCCC----------------
Confidence 689999999 9999999999965 9999999999999 89999999999999999999953
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCC-CCcceEEEEEEecCC
Q 020660 83 RTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDD-FLGVFDVSVHFSGYV 161 (323)
Q Consensus 83 ~~~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~-~~~~~~~~v~~~~~~ 161 (323)
+++.++|.+.|.++++ +++..+++||+++++|.+.+++. .+ .+..+++++.+.|++
T Consensus 63 -----~~~~~~l~~~i~~li~-------------~n~~~~~~lri~vtrG~~~r~~~-----~p~~~~~~~~~i~~~p~~ 119 (277)
T 3daa_A 63 -----PYTKDKFHQLLHELVE-------------KNELNTGHIYFQVTRGTSPRAHQ-----FPENTVKPVIIGYTKENP 119 (277)
T ss_dssp -----SSCHHHHHHHHHHHHH-------------HHTCCSEEEEEEEESCBCSCCSS-----CCSSCCCCEEEEEEEECC
T ss_pred -----CCCHHHHHHHHHHHHH-------------hcCCCcEEEEEEEEecCCCcCCC-----CCCCCCCcEEEEEEEECC
Confidence 3589999999999998 34557899999999988765432 12 345678888888887
Q ss_pred CccccccCCCceEEEeccccc-ccccccccccccchHHH--hhCCCCCCeEEEecCCCeEEecCcceEEEEEcCCCCchh
Q 020660 162 PFVFGVEGTGARLALVGRGRD-VAEAKYSDWVRLRKPLE--KLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAE 238 (323)
Q Consensus 162 ~~~~~~~~~g~~l~~~~~~r~-~~~~k~~~~~~~~~~l~--~a~~~g~de~lL~~~gg~v~Eg~~sNlF~v~~~~~~~~~ 238 (323)
+.. ..+.+|+++.++...|. .+..|..++. .++++ +|+++|+||+|+.++| +|+||+++|||++++++
T Consensus 120 ~~~-~~~~~gv~~~~~~~~r~~~~~~Kt~nyl--~~~la~~eA~~~g~~e~l~l~~g-~v~E~~~sNif~~~~~~----- 190 (277)
T 3daa_A 120 RPL-ENLEKGVKATFVEDIRWLRCDIKSLNLL--GAVLAKQEAHEKGCYEAILHRNN-TVTEGSSSNVFGIKDGI----- 190 (277)
T ss_dssp CCH-HHHHHCEEEEEEECCCCSCTTSCBSCCH--HHHHHHHHHHHTTCSEEEEEETT-EEEEETTBEEEEEETTE-----
T ss_pred CCh-HHHhCCeEEEEecCccccCCCcchhhhH--HHHHHHHHHHHCCCCEEEEEcCC-EEEEcCceEEEEEECCE-----
Confidence 532 33356899888765442 2455544332 24444 6888999999776665 99999999999999988
Q ss_pred hhhhhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHhCCCcEEEEecCHHHHhhcceeEEecCccceEEEEEech
Q 020660 239 DKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSSFDLIAQKR 315 (323)
Q Consensus 239 ~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~~gi~v~e~~~~~~dL~~adEvFltns~~gv~pV~~~~~ 315 (323)
|+|||+++++|+||||+.||++|+++|++|+|+.++++||..|||+|+|||++||+||.+.+.
T Consensus 191 --------------l~TP~~~~~iL~GitR~~vl~~~~~~g~~v~e~~i~~~el~~adevf~~ns~~~i~pV~~id~ 253 (277)
T 3daa_A 191 --------------LYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTSEITPVIEIDG 253 (277)
T ss_dssp --------------EEECCSSTTSCCCHHHHHHHHHHHHTTCCEECCCCBHHHHHTCSEEEEEETTTEEEEEEEETT
T ss_pred --------------EECCCCcCCCCccHHHHHHHHHHHHcCCeEEEEeCCHHHHHhcCeeeeecChhhEEEEEEECC
Confidence 999999999999999999999999999999999999999999999999999999999998653
No 2
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET: PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB: 1et0_A* 1i2l_A*
Probab=100.00 E-value=2.4e-48 Score=361.57 Aligned_cols=240 Identities=18% Similarity=0.179 Sum_probs=197.6
Q ss_pred EEEECCeeecCCCCCccCccccC---cCeeEEEEEEEcCCccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCCCC
Q 020660 6 IVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPI 82 (323)
Q Consensus 6 ~~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~~~~~ 82 (323)
|+|+||+.. +.+++.|++ |||+|||||+++| ++++|++|++||.+||+.|+++.
T Consensus 1 m~~~nG~~~-----~~i~~~d~g~~yG~gvfEtir~~~G--~~~~l~~Hl~RL~~Sa~~l~~~~---------------- 57 (269)
T 1i2k_A 1 MFLINGHKQ-----ESLAVSDRATQFGDGCFTTARVIDG--KVSLLSAHIQRLQDACQRLMISC---------------- 57 (269)
T ss_dssp CEEETTEEE-----SCCCTTCHHHHHCCEEEEEEEEETT--EETTHHHHHHHHHHHHHHTTCCC----------------
T ss_pred CEEECCCcC-----CccCccccccccceeEEEEEEEECC--EEecHHHHHHHHHHHHHhcCCCC----------------
Confidence 489999943 679999875 9999999999998 89999999999999999999953
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEEecCCC
Q 020660 83 RTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVP 162 (323)
Q Consensus 83 ~~~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~~~~~~ 162 (323)
+ +.++|.+.|.++++. + .+++||++|+++.+++++. ++.+..+++++.+.|+++
T Consensus 58 -----~-~~~~l~~~i~~~~~~-------------~--~~~~iR~~v~~g~~~~g~~-----p~~~~~~~~~i~~~p~~~ 111 (269)
T 1i2k_A 58 -----D-FWPQLEQEMKTLAAE-------------Q--QNGVLKVVISRGSGGRGYS-----TLNSGPATRILSVTAYPA 111 (269)
T ss_dssp -----C-CHHHHHHHHHHHHHH-------------H--CSEEEEEEEECCSCCSTTC-----CTTCCCCEEEEEEECCCS
T ss_pred -----C-CHHHHHHHHHHHHHh-------------C--CCeEEEEEEEcCCCCCCCC-----CccCCCcEEEEEEEECCC
Confidence 2 688899998888862 2 3689999999987765443 123356788888899987
Q ss_pred ccccccCCCceEEEeccccccc----ccccccccccchHHH--hhCCCCCCeEEEecCCCeEEecCcceEEEEEcCCCCc
Q 020660 163 FVFGVEGTGARLALVGRGRDVA----EAKYSDWVRLRKPLE--KLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSE 236 (323)
Q Consensus 163 ~~~~~~~~g~~l~~~~~~r~~~----~~k~~~~~~~~~~l~--~a~~~g~de~lL~~~gg~v~Eg~~sNlF~v~~~~~~~ 236 (323)
.......+|+++.++..+|..+ ..|..++. .++++ +|+++|+||+|+.|.+|+|+||+++|||++++|+
T Consensus 112 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~Kt~n~~--~~~~a~~~A~~~G~de~l~ld~~G~v~E~s~sNif~v~~g~--- 186 (269)
T 1i2k_A 112 HYDRLRNEGITLALSPVRLGRNPHLAGIKHLNRL--EQVLIRSHLEQTNADEALVLDSEGWVTECCAANLFWRKGNV--- 186 (269)
T ss_dssp HHHHHHHHCEEEEECSCCBCCCTTTTBCCBSCCH--HHHHHHHHHTTSSCSEEEEEBTTSBEEECSSSEEEEEETTE---
T ss_pred cchhhhcCCeEEEEeceecCCCCcccCcchhhhH--HHHHHHHHHHHCCCCEEEEECCCCcEEEcCceEEEEEECCE---
Confidence 4322234689998888766432 34443332 23443 6899999999877655599999999999999988
Q ss_pred hhhhhhhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHhCCCcEEEEecCHHHHhhcceeEEecCccceEEEEEech
Q 020660 237 AEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSSFDLIAQKR 315 (323)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~~gi~v~e~~~~~~dL~~adEvFltns~~gv~pV~~~~~ 315 (323)
|+|||+++|+|+||||+.||++|+++|++|+|+.++++||..|||+|+|||++||+||.+.+.
T Consensus 187 ----------------l~TP~~~~~iL~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gv~pV~~id~ 249 (269)
T 1i2k_A 187 ----------------VYTPRLDQAGVNGIMRQFCIRLLAQSSYQLVEVQASLEESLQADEMVICNALMPVMPVCACGD 249 (269)
T ss_dssp ----------------EEEECCSSSSBCCHHHHHHHHHHHHSSSEEEEECCBHHHHHTCSEEEEECSSSCEEEEEEETT
T ss_pred ----------------EECCCCccCccCCHHHHHHHHHHHHcCCeEEEEECCHHHHhhCCEEEEcCChhheEEEEEECC
Confidence 999999999999999999999999999999999999999999999999999999999998643
No 3
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella pneumophila}
Probab=100.00 E-value=2.8e-48 Score=362.28 Aligned_cols=239 Identities=17% Similarity=0.196 Sum_probs=196.1
Q ss_pred cEEEECCeeecCCCCCccCccccC---cCeeEEEEEEEcCCccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCCC
Q 020660 5 RIVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEP 81 (323)
Q Consensus 5 ~~~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~~~~ 81 (323)
.++|+|| .+++.++++|++ |||+|||||+++| ++|+|++|++||.+||+.|+|+.
T Consensus 4 ~~~~~nG-----~~~a~i~~~d~g~~yG~gvFEtir~~~g--~~~~l~~Hl~RL~~Sa~~l~i~~--------------- 61 (272)
T 3lul_A 4 TRVIEDK-----GDMTPSFGIDDRIFLGEGLFETIRVNSS--KPSFAYMHWERLGNSARQLGIPF--------------- 61 (272)
T ss_dssp EEECCCC-----C--CCCCCTTBGGGGTCEEEEEEEEETT--EESSHHHHHHHHHHHHHHHTCCC---------------
T ss_pred eEEEECC-----ccccccCCccchhhcceEeEEEEEEECC--EeCCHHHHHHHHHHHHHHhCCCC---------------
Confidence 3699999 345789999976 9999999999998 89999999999999999999953
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEEecCC
Q 020660 82 IRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYV 161 (323)
Q Consensus 82 ~~~~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~~~~~ 161 (323)
+++.++|.+.|.++++ +++..+++||+++++|.+.+++. .+....+++++. .|++
T Consensus 62 ------p~~~~~l~~~i~~l~~-------------~~~~~~~~irl~v~rg~~~~g~~-----~~~~~~~~~~~~-~p~~ 116 (272)
T 3lul_A 62 ------EISFDDWFEHLIQKIQ-------------KDNLYHGGIKAILSGGPASRGLA-----ERGQVSQLIFQT-FNYS 116 (272)
T ss_dssp ------CCCHHHHHHHHHHHHH-------------HTTCSSEEEEEEEECCBCCSSTT-----CCCSSEEEEEEE-ECCC
T ss_pred ------CCCHHHHHHHHHHHHH-------------hcCCCCEEEEEEEEecCCccCcC-----CCCCCCcEEEEE-ECCC
Confidence 3689999999999997 45567899999999988766543 123344666666 6654
Q ss_pred CccccccCCCceEEEecccccccccccccccccc---hHHH--hhCCCCCCeEEEecCCCeEEecCcceEEEEEcCCCCc
Q 020660 162 PFVFGVEGTGARLALVGRGRDVAEAKYSDWVRLR---KPLE--KLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSE 236 (323)
Q Consensus 162 ~~~~~~~~~g~~l~~~~~~r~~~~~k~~~~~~~~---~~l~--~a~~~g~de~lL~~~gg~v~Eg~~sNlF~v~~~~~~~ 236 (323)
+.. .++++.++.++|..+.. ....|+.+ ++++ +|+++|+||+|+.|.+|+|+||+++|||++++++
T Consensus 117 ~~~-----~~v~l~~~~~~r~~~~~-~~~~Kt~nyl~~~la~~~A~~~G~de~L~ld~~g~v~E~~~sNif~~~~g~--- 187 (272)
T 3lul_A 117 IQK-----HPVRLISINWLRDKANP-LYQLKSVNYLEAIIAQRQAIAVGADDALFFNTENHVTETTCANLFLIENNI--- 187 (272)
T ss_dssp CCC-----SCEEEEEEEEEECTTCG-GGGSCBSCCHHHHHHHHHHHHTTCSEEEEEETTSBEEEESSCEEEEEETTE---
T ss_pred Ccc-----ccEEEEEEeEEecCCCc-ccchhhhccHHHHHHHHHHHHcCCCEEEEECCCCeEEEcCCeEEEEEECCE---
Confidence 332 24888888888864321 23444432 4444 6888999999776644599999999999999988
Q ss_pred hhhhhhhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHhCCCcEEEEecCHHHHhhcceeEEecCccceEEEEEech
Q 020660 237 AEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSSFDLIAQKR 315 (323)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~~gi~v~e~~~~~~dL~~adEvFltns~~gv~pV~~~~~ 315 (323)
|+|||+++++||||||+.||++|+++|++|+|+.++++||..|||+|+|||++||+||.+.+.
T Consensus 188 ----------------l~TP~l~~~iL~GitR~~ll~la~~~g~~v~e~~i~~~el~~adevf~~ns~~~v~PV~~id~ 250 (272)
T 3lul_A 188 ----------------LYTPRVEDGILPGITRARLISHCQQHKMSVQEISLTKKRIEDADAVFLTNSLQGIRRVLSLDN 250 (272)
T ss_dssp ----------------EEECCGGGTCCCCHHHHHHHHHHHHTTCCEEECCCBHHHHHTCSEEEEEETTTEEEEEEEETT
T ss_pred ----------------EECCCCccCcCcCHHHHHHHHHHHHcCCeEEEEECCHHHHhhCCEEEEEcCchhEEEEEEECC
Confidence 999999999999999999999999999999999999999999999999999999999998654
No 4
>3u0g_A Putative branched-chain amino acid aminotransfera; structural genomics, seattle structural genomics center for infectious disease; 1.90A {Burkholderia pseudomallei}
Probab=100.00 E-value=1.6e-48 Score=372.97 Aligned_cols=251 Identities=18% Similarity=0.185 Sum_probs=208.3
Q ss_pred ccEEEECCeeecCCCCCccCccccC---cCeeEEEEEEEc---CCccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCC
Q 020660 4 TRIVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHN---NGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPS 77 (323)
Q Consensus 4 ~~~~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~---g~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~ 77 (323)
..++|+||+++ |.+++.++++|++ |||+|||||+++ |+.++|+|++|++||.+||+.|+|+.
T Consensus 28 ~~~~w~nG~~v-p~~~~~i~~~drg~~yGdgvFEtir~~~~~dG~~~~f~l~~Hl~RL~~Sa~~l~i~~----------- 95 (328)
T 3u0g_A 28 DGKIWMDGKLI-EWRDAKIHVLTHTLHYGMGVFEGVRAYKTADGGTAIFRLKEHTKRLLNSAKIFQMDV----------- 95 (328)
T ss_dssp CSEEEETTEEE-EGGGCEEESSCHHHHHCCEEECCEEEEECTTSCEEEESHHHHHHHHHHHHHHTTCCC-----------
T ss_pred CCEEEECCEEe-ehHhCccCccchHHhcCceEEEEEEEEECCCCCeeeCCHHHHHHHHHHHHHHHCCCC-----------
Confidence 45899999999 9999999999976 999999999998 53478999999999999999999954
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEE
Q 020660 78 GLEPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHF 157 (323)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~ 157 (323)
+++.++|.+.|.++++ +++..+++||++++++.+.+++ .+....++++|.+
T Consensus 96 ----------p~~~~~l~~~i~~lv~-------------~n~~~~~~iR~~vtrg~~~~g~------~p~~~~~~~~i~~ 146 (328)
T 3u0g_A 96 ----------PFDQETLEAAQRDVVR-------------ENKLESCYLRPIIWIGSEKLGV------SAKGNTIHVAIAA 146 (328)
T ss_dssp ----------SSCHHHHHHHHHHHHH-------------HTTCSSEEEEEEEEECSSCCST------TCCCCCEEEEEEE
T ss_pred ----------CCCHHHHHHHHHHHHH-------------hcCCCCeEEEEEEEecCCCCCc------CCCCCCcEEEEEE
Confidence 3689999999999998 4556789999999999876533 3322347777887
Q ss_pred ecCCCccc-cccCCCceEEEeccccccccccccccc-ccc---hHHH--hhCCCCCCeEEEecCCCeEEecCcceEEEEE
Q 020660 158 SGYVPFVF-GVEGTGARLALVGRGRDVAEAKYSDWV-RLR---KPLE--KLRPPSVTELLLSNDGDQLLEGSITNFFVVC 230 (323)
Q Consensus 158 ~~~~~~~~-~~~~~g~~l~~~~~~r~~~~~k~~~~~-~~~---~~l~--~a~~~g~de~lL~~~gg~v~Eg~~sNlF~v~ 230 (323)
.|++++.. ..+.+|+++.++.+.|..++....+.| ..+ ++++ +|+++|+||+|+.+.+|+|+||+++|||+++
T Consensus 147 ~p~~~~~~~~~~~~gv~l~~~~~~R~~~~~~~~~~K~t~nyl~~vla~~eA~~~G~~e~l~ld~~g~v~E~~~sNif~v~ 226 (328)
T 3u0g_A 147 WPWGAYLGEEGLAKGIRVKTSSFTRHHVNVSMVRAKASGWYVNSILANQEATADGYDEALLLDVDGYVSEGSGENFFLVN 226 (328)
T ss_dssp EECC----HHHHHHCEEEEECSSCCCCTTTSCTTSCBGGGHHHHHHHHHHHHHTTCSEEEEECTTSCEEEESSSEEEEEE
T ss_pred EEcCCCCChhhhcCCEEEEEeeeeecCCCCcccchhhhhhhHHHHHHHHHHHHCCCCEEEEECCCCcEEEcCceeEEEEE
Confidence 88765431 123469999999888876654344555 232 4444 6889999999877655599999999999999
Q ss_pred cCCCCchhhhhhhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHhCCCcEEEEecCHHHHhhcceeEEecCccceEEE
Q 020660 231 RKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSSFDL 310 (323)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~~gi~v~e~~~~~~dL~~adEvFltns~~gv~pV 310 (323)
+++ |+|||+++ +|+||||+.||++|+++|++|+|+.++++||..|||+|+|||++||+||
T Consensus 227 ~g~-------------------l~TP~~~~-iL~GitR~~vl~~a~~~g~~v~e~~i~~~eL~~adevf~tns~~~v~PV 286 (328)
T 3u0g_A 227 RGK-------------------LYTPDLAS-CLDGITRDTVITLAKEAGIEVIEKRITRDEVYTADEAFFTGTAAEVTPI 286 (328)
T ss_dssp TTE-------------------EEECCSSS-SCCCHHHHHHHHHHHHTTCCEEECCCCHHHHHTCSEEEEEETTTEEEEE
T ss_pred CCE-------------------EEeCCccc-cchHHHHHHHHHHHHHcCCeEEEEeCCHHHHhhCCEEEEEcchhhEEEE
Confidence 988 99999988 9999999999999999999999999999999999999999999999999
Q ss_pred EEech
Q 020660 311 IAQKR 315 (323)
Q Consensus 311 ~~~~~ 315 (323)
.+.+.
T Consensus 287 ~~Id~ 291 (328)
T 3u0g_A 287 RELDN 291 (328)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 98654
No 5
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU; 1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A* 1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A*
Probab=100.00 E-value=2.2e-48 Score=368.58 Aligned_cols=252 Identities=16% Similarity=0.150 Sum_probs=207.2
Q ss_pred ccEEEECCeeecCCCCCccCccccC---cCeeEEEEEEE---cCCccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCC
Q 020660 4 TRIVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTH---NNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPS 77 (323)
Q Consensus 4 ~~~~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~---~g~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~ 77 (323)
..++|+||+++ +.+++.+++.|++ |||+|||||++ +|+ ++|+|++|++||.+||+.|+|+.
T Consensus 6 ~~~~~~ng~~~-~~~~~~i~~~d~g~~yG~gvFEtir~~~~~~G~-~~~~l~~Hl~RL~~Sa~~l~~~~----------- 72 (309)
T 1iye_A 6 ADYIWFNGEMV-RWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGP-VVFRHREHMQRLHDSAKIYRFPV----------- 72 (309)
T ss_dssp CSEEEETTEEE-EGGGCCCCTTCHHHHHCCEEECCEEEECCTTSS-EEETHHHHHHHHHHHHHHHTCCC-----------
T ss_pred CCeEEECCEEE-EhHHcccCccchHHhccceeEEEEEEEECCCCc-EEcCHHHHHHHHHHHHHHhCCCC-----------
Confidence 34899999999 9999999999865 99999999999 553 69999999999999999999953
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEE
Q 020660 78 GLEPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHF 157 (323)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~ 157 (323)
+++.++|.+.+.++++ .++..+++||++++++.+.+++. ++....+++++..
T Consensus 73 ----------~~~~~~l~~~i~~~~~-------------~~~~~~~~iR~~v~~g~~~~g~~-----p~~~~~~~~~i~~ 124 (309)
T 1iye_A 73 ----------SQSIDELMEACRDVIR-------------KNNLTSAYIRPLIFVGDVGMGVN-----PPAGYSTDVIIAA 124 (309)
T ss_dssp ----------CSCHHHHHHHHHHHHH-------------HTTCSSEEEEEEEEECSSCSSSS-----CCTTCCEEEEEEE
T ss_pred ----------CCCHHHHHHHHHHHHH-------------hcCCCCEEEEEEEEeCCCccCCC-----CCCCCCcEEEEEE
Confidence 3689999999999987 34457899999999987654332 1122357778888
Q ss_pred ecCCCccc-cccCCCceEEEeccccccccccccccccc-c---hHHH--hhCCCCCCeEEEecCCCeEEecCcceEEEEE
Q 020660 158 SGYVPFVF-GVEGTGARLALVGRGRDVAEAKYSDWVRL-R---KPLE--KLRPPSVTELLLSNDGDQLLEGSITNFFVVC 230 (323)
Q Consensus 158 ~~~~~~~~-~~~~~g~~l~~~~~~r~~~~~k~~~~~~~-~---~~l~--~a~~~g~de~lL~~~gg~v~Eg~~sNlF~v~ 230 (323)
.|++++.. ..+.+|+++.++.+.|..+.......|+. + ++++ +|+++|+||+|+.|.+|+|+||+++|||+++
T Consensus 125 ~p~~~~~~~~~~~~gv~l~~~~~~r~~~~~~~~~~K~~~ny~~~~la~~~A~~~G~de~l~ld~~G~V~Egs~sNif~v~ 204 (309)
T 1iye_A 125 FPWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQEGIALDVNGYISEGAGENLFEVK 204 (309)
T ss_dssp ECCCCTTCTTHHHHCEEEEECSSCCCCTTTSCTTSCBGGGHHHHHHHHHHHHHTTCSEEEEECTTSBEEEETTBEEEEEE
T ss_pred EEcCccCCcccccCCeEEEEeeeeccCCCCCCccccchhhhHHHHHHHHHHHHcCCCEEEEECCCCcEEEcCceEEEEEE
Confidence 88765421 12236899998888887654433445532 2 3443 6888999999877655599999999999999
Q ss_pred cCCCCchhhhhhhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHhCCCcEEEEecCHHHHhhcceeEEecCccceEEE
Q 020660 231 RKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSSFDL 310 (323)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~~gi~v~e~~~~~~dL~~adEvFltns~~gv~pV 310 (323)
+|+ |+|||+++|+|+||||+.||++|+++|++|+|+.++++||..|||+|+|||++||+||
T Consensus 205 ~g~-------------------l~TP~l~~~iL~GitR~~ll~~a~~~g~~v~E~~i~~~eL~~adevfltns~~gv~PV 265 (309)
T 1iye_A 205 DGV-------------------LFTPPFTSSALPGITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSGTAAEITPV 265 (309)
T ss_dssp TTE-------------------EEECCGGGTCCCCHHHHHHHHHHHHTTCCEEECCCBTTHHHHCSEEEEEETTTEEEEE
T ss_pred CCE-------------------EECCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHhhCcEEEEccCCCEEEEE
Confidence 988 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EEech
Q 020660 311 IAQKR 315 (323)
Q Consensus 311 ~~~~~ 315 (323)
.+.+.
T Consensus 266 ~~id~ 270 (309)
T 1iye_A 266 RSVDG 270 (309)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 98654
No 6
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A {Corynebacterium glutamicum}
Probab=100.00 E-value=2.6e-48 Score=369.62 Aligned_cols=246 Identities=15% Similarity=0.174 Sum_probs=183.8
Q ss_pred ccEEEEC---Cee--ecCCCCCccCccccC---cCeeEEEEEEEcCCccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCC
Q 020660 4 TRIVFSN---GVV--SQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPT 75 (323)
Q Consensus 4 ~~~~~~n---G~~--~~~~~~~~is~~~~~---G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~ 75 (323)
+.++|+| |++ + +.+++.++++|++ |||+|||||+++| ++|+|++|++||.+||+.|+|+.|
T Consensus 14 ~~~v~~n~~~G~~~~~-~~~~a~i~~~Drg~~yGdgvFEtirv~~G--~~~~l~~Hl~RL~~Sa~~L~i~~p-------- 82 (315)
T 3sno_A 14 PVILIVEPYGGSIRQQ-NPNLPMVFWDDAALTRGDGIFETLLIRDG--HACNVRRHGERFKASAALLGLPEP-------- 82 (315)
T ss_dssp CEEEEECSTTCCEEEE-CTTSCCCCTTBTTTTTCCEEEEEEEEETT--EETTHHHHHHHHHHHHHHHTCCCC--------
T ss_pred CEEEEEECCCCeEEEe-eHHHCcccccchHhhcCCEeEEEEEEECC--EECCHHHHHHHHHHHHHHhCCCCc--------
Confidence 4589999 999 9 9999999999976 9999999999998 899999999999999999999543
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEE
Q 020660 76 PSGLEPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSV 155 (323)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v 155 (323)
+.++|.+.++++++... + .|+..+++||+++++|.+.+ | .|++++
T Consensus 83 --------------~~~~l~~~i~~~v~~~~----~-----~n~~~~~~iRl~vtrG~~~~------g------~p~~~v 127 (315)
T 3sno_A 83 --------------ILEDWEKATQMGIESWY----S-----HPNAGEASCTWTLSRGRSST------G------LASGWL 127 (315)
T ss_dssp --------------CHHHHHHHHHHHHHHHH----T-----C--CCCEEEEEEEECCBTTT------C------CCEEEE
T ss_pred --------------CHHHHHHHHHHHHHhhc----c-----cCCCCCEEEEEEEEeCCCCC------C------CCEEEE
Confidence 67889999998887321 0 24567899999999987642 1 256777
Q ss_pred EEecCCCccccccCCCceEEEeccccc-----------------------c----cccccccccccchHHHhhCCCCCCe
Q 020660 156 HFSGYVPFVFGVEGTGARLALVGRGRD-----------------------V----AEAKYSDWVRLRKPLEKLRPPSVTE 208 (323)
Q Consensus 156 ~~~~~~~~~~~~~~~g~~l~~~~~~r~-----------------------~----~~~k~~~~~~~~~~l~~a~~~g~de 208 (323)
.+.|+++.....+.+|+++.++..+.. . ...|+.+|........+|+++|+||
T Consensus 128 ~~~p~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~~~r~~~s~~~~~~~p~~l~~~Kt~nyl~~vla~~~A~~~G~de 207 (315)
T 3sno_A 128 TITPVSSDKLAQREHGVSVMTSSRGYSIDTGLPGIGKATRGELSKVERTPAPWLTVGAKTLAYAANMAALRYAKSNGFDD 207 (315)
T ss_dssp EEEECCHHHHHHHHHCEEEEEEEC-----------------------------------------------------CEE
T ss_pred EEEECCCcchhhhcCCEEEEEeccccccccccccccccccccccccccccCcccccCcchhccHHHHHHHHHHHHcCCCE
Confidence 888887654333457888887764321 1 1233322222112233688999999
Q ss_pred EEEecCCCeEEecCcceEEEEEcCCCCchhhhhhhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHhCCCcEEEEecC
Q 020660 209 LLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASS 288 (323)
Q Consensus 209 ~lL~~~gg~v~Eg~~sNlF~v~~~~~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~~gi~v~e~~~~ 288 (323)
+|+.+.+| |+||+++|||++++++ |+|||+++++|+||||+.||++|+++|++|+|+.++
T Consensus 208 ~l~l~~~G-v~E~s~sN~f~~~~g~-------------------l~TPp~~~~iL~GitR~~ll~~a~~~g~~v~e~~i~ 267 (315)
T 3sno_A 208 VIFTDGDR-VLEGATSTVVSFKGDK-------------------IRTPSPGGDILPGTTQAALFAHATEKGWRCKEKDLS 267 (315)
T ss_dssp EEEEETTE-EEEESSSEEEEEETTE-------------------EEEECCC------HHHHHHHHHHHHTTCEEEEECCB
T ss_pred EEEEeCCC-cEEcCCeeEEEEECCE-------------------EEcCCCCCCcChhHHHHHHHHHHHHcCCEEEEEECC
Confidence 98877667 9999999999999988 999999999999999999999999999999999999
Q ss_pred HHHHhhcceeEEecCccceEEEEEech
Q 020660 289 WSQHELWKEAFITSKYSSSFDLIAQKR 315 (323)
Q Consensus 289 ~~dL~~adEvFltns~~gv~pV~~~~~ 315 (323)
++||..|||+|+|||++||+||++.+.
T Consensus 268 ~~eL~~adevfl~ns~~gv~pV~~id~ 294 (315)
T 3sno_A 268 IDDLFGADSVWLVSSVRGPVRVTRLDG 294 (315)
T ss_dssp HHHHHHSSEEEEEETTTEEEEEEEESS
T ss_pred HHHHHhCCeeEEEcCcccEEEEEEECC
Confidence 999999999999999999999998554
No 7
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB: 1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A*
Probab=100.00 E-value=1.7e-47 Score=362.45 Aligned_cols=251 Identities=18% Similarity=0.186 Sum_probs=204.3
Q ss_pred ccEEEECCeeecCCCCCccCccccC---cCeeEEEEEEEcC--CccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCC
Q 020660 4 TRIVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNN--GSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSG 78 (323)
Q Consensus 4 ~~~~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~g--~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~ 78 (323)
..++|+||+++ +.+++.++++|++ |||+|||||+++| +.++|+|++|++||.+||+.|+|+.
T Consensus 5 ~~~~~~nG~~~-~~~~~~i~~~d~g~~yG~gvFEtir~~~g~~g~~~~~l~~Hl~RL~~Sa~~l~~~~------------ 71 (308)
T 2eiy_A 5 AGLIWMNGAFV-PQEEAKTSVLSHALHYGTSVFEGIRAYETAKGPAIFRLKEHVKRFYNSAKVLRMEI------------ 71 (308)
T ss_dssp CCSEEETTEEE-CGGGCCCCTTCHHHHHCCEEECCEEEECCTTSCEEETHHHHHHHHHHHHHHTTCCC------------
T ss_pred CCeEEECCEEe-EhHHCccCccchHhhhcceEEEEEEEECCCCcccccCHHHHHHHHHHHHHHhCCCC------------
Confidence 35799999999 9999999999976 9999999999987 1159999999999999999999953
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCC-CcceEEEEEE
Q 020660 79 LEPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDF-LGVFDVSVHF 157 (323)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~-~~~~~~~v~~ 157 (323)
+++.++|.+.|.++++ .++..+++||++++++.+.+++ .+. ...+++++..
T Consensus 72 ---------~~~~~~l~~~i~~~~~-------------~~~~~~~~iR~~v~~g~~~~~~------~p~~~~~~~~~i~~ 123 (308)
T 2eiy_A 72 ---------PFAPEELEEAIKEVVR-------------RNGYRSCYIRPLAWMGAKALGV------NPLPNNPAEVMVAA 123 (308)
T ss_dssp ---------SSCHHHHHHHHHHHHH-------------HTTCSSEEEEEEEECCSSCCSS------CCGGGCSCEEEEEE
T ss_pred ---------CCCHHHHHHHHHHHHH-------------hCCCCcEEEEEEEEecCCccCc------CCCCCCCeEEEEEE
Confidence 3688999999999887 3445689999999998765543 222 2356777887
Q ss_pred ecCCCccc-cccCCCceEEEecccccccccccccccccc----hHHH--hhCCCCCCeEEEecCCCeEEecCcceEEEEE
Q 020660 158 SGYVPFVF-GVEGTGARLALVGRGRDVAEAKYSDWVRLR----KPLE--KLRPPSVTELLLSNDGDQLLEGSITNFFVVC 230 (323)
Q Consensus 158 ~~~~~~~~-~~~~~g~~l~~~~~~r~~~~~k~~~~~~~~----~~l~--~a~~~g~de~lL~~~gg~v~Eg~~sNlF~v~ 230 (323)
.|++++.. ..+.+|+++.++...|..+.......|+.. ++++ +|+++|+||+|+.|.+|+|+||+++|||+++
T Consensus 124 ~p~~~~~~~~~~~~gv~l~~~~~~r~~~~~~~~~~Kt~~ny~~~~la~~~A~~~G~de~l~ld~~G~V~Egs~sNif~v~ 203 (308)
T 2eiy_A 124 WEWGAYLGEEAVRKGARLITSSWARFPANVMPGKAKVGGNYVNSALAKMEAVAAGADEALLLDEEGYVAEGSGENLFFVR 203 (308)
T ss_dssp EEC--------CCSCEEEEECSSCBCCTTTSCTTSCBGGGHHHHHHHHHHHHHTTCSEEEEEBTTSSEEEESSCEEEEEE
T ss_pred EEcCccCCcccccCCeEEEEecceecCCCCcCcceehhhhHHHHHHHHHHHHHcCCCEEEEECCCCeEEEcCceEEEEEE
Confidence 88765321 112468999999888876543334455443 3343 6788999999877655599999999999999
Q ss_pred cCCCCchhhhhhhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHhCCCcEEEEecCHHHHhhcceeEEecCccceEEE
Q 020660 231 RKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSSFDL 310 (323)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~~gi~v~e~~~~~~dL~~adEvFltns~~gv~pV 310 (323)
+|+ |+|||+++ +|+||||+.||++|+++|++|+|+.++++||..|||+|+|||++||+||
T Consensus 204 ~g~-------------------l~TP~~~~-iL~GitR~~ll~~a~~~g~~v~E~~i~~~dL~~adevfltns~~gv~pV 263 (308)
T 2eiy_A 204 DGV-------------------IYALEHSV-NLEGITRDSVIRIAKDLGYEVQVVRATRDQLYMADEVFMTGTAAEVTPV 263 (308)
T ss_dssp TTE-------------------EEEECCTT-SCCCHHHHHHHHHHHHTTCCEEEECCCHHHHHTCSEEEEEETTTEEEEE
T ss_pred CCE-------------------EEeCCcCC-CCchHHHHHHHHHHHHCCCeEEEEeCCHHHHhhCCEEEEccCcceEEEE
Confidence 988 99999998 9999999999999999999999999999999999999999999999999
Q ss_pred EEech
Q 020660 311 IAQKR 315 (323)
Q Consensus 311 ~~~~~ 315 (323)
.+.+.
T Consensus 264 ~~id~ 268 (308)
T 2eiy_A 264 SMIDW 268 (308)
T ss_dssp EEETT
T ss_pred EEEcC
Confidence 98654
No 8
>2xpf_A 4-amino-4-deoxychorismate lyase; para-aminobenzoic acid, folate biosynthesis; HET: PLP PG4; 1.75A {Pseudomonas aeruginosa} PDB: 2y4r_A* 2xpf_B*
Probab=100.00 E-value=1.5e-47 Score=360.72 Aligned_cols=241 Identities=15% Similarity=0.125 Sum_probs=197.2
Q ss_pred cEEEECCeeecCCCCCccCccccC---cCeeEEEEEEEcCCccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCCC
Q 020660 5 RIVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEP 81 (323)
Q Consensus 5 ~~~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~~~~ 81 (323)
.++|+||+++ +.+++.|++ |||+|||||+++| ++++|++|++||.+||+.|+++
T Consensus 22 m~~~~nG~~~-----~~i~~~d~g~~yGdgvFEtir~~~G--~~~~l~~Hl~RL~~Sa~~l~~~---------------- 78 (292)
T 2xpf_A 22 MLDWVDGRPA-----AELSVRDRGLAYGDGLFETLAVRAG--TPRLLERHLARLEEGCRRLAIP---------------- 78 (292)
T ss_dssp -CEEETTEEC-----SEEETTBHHHHHCCEEEEEEEEETT--EETTHHHHHHHHHHHHHHTTCC----------------
T ss_pred cEEEECCEEE-----EEEcccchhhhcCcEeEEEEEEECC--EECCHHHHHHHHHHHHHhcCCC----------------
Confidence 3689999998 678888865 9999999999998 8999999999999999999983
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEEecCC
Q 020660 82 IRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYV 161 (323)
Q Consensus 82 ~~~~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~~~~~ 161 (323)
.+.++|.+.|.++++. ..+++||++|+++.+.+++. ++.+..+++++.+.|++
T Consensus 79 -------~~~~~l~~~i~~~v~~---------------~~~~~iR~~v~rg~~~~g~~-----p~~~~~~~~~i~~~p~~ 131 (292)
T 2xpf_A 79 -------LDTAALRQELLAFCAA---------------LGDGVAKLIVTRGEGLRGYA-----PPAEASPRRILSGSPRP 131 (292)
T ss_dssp -------CCHHHHHHHHHHHHHH---------------HCSEEEEEEEECCBCCSSSS-----CCTTCCCEEEEEEECCC
T ss_pred -------CCHHHHHHHHHHHHHh---------------CCCcEEEEEEEecCCCCCCC-----CCCCCCcEEEEEEEECC
Confidence 1367888888888862 13689999999987765443 12334678888889988
Q ss_pred CccccccCCCceEEEecccccccccccccccccc---hHHH--hhCCCCCCeEEEecCCCeEEecCcceEEEEEcCCCCc
Q 020660 162 PFVFGVEGTGARLALVGRGRDVAEAKYSDWVRLR---KPLE--KLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSE 236 (323)
Q Consensus 162 ~~~~~~~~~g~~l~~~~~~r~~~~~k~~~~~~~~---~~l~--~a~~~g~de~lL~~~gg~v~Eg~~sNlF~v~~~~~~~ 236 (323)
+.....+.+|+++.++..+|.... .....|+.+ ++++ +|+++|+||+|+.|.+|+|+||+++|||++++|+
T Consensus 132 ~~~~~~~~~gv~l~~~~~~~~~~~-~~~~~Kt~ny~~~~la~~~A~~~G~de~L~ld~~G~V~Egs~sNif~v~~g~--- 207 (292)
T 2xpf_A 132 AYPERHWQQGVRLFACRTRLAEQP-LLAGLKHLNRLEQVLARAEWSDAGHAEGLMLDVHERVVEGVFSNLLLVLDGT--- 207 (292)
T ss_dssp CCCHHHHHTCEEEEECCCCBCCCT-TTTBCCBSCCHHHHHHHTTCCCTTCSEEEEEBTTCCEEEESSSEEEEEETTE---
T ss_pred ccchhhccCCeEEEEeeeeccCCC-CCCCcchhhhHHHHHHHHHHHHcCCCEEEEECCCCCEEEcCCeEEEEEECCE---
Confidence 754333356899988887664321 122344332 3444 6889999999777655599999999999999998
Q ss_pred hhhhhhhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHhCCCcEEEEecCHHHHhhcceeEEecCccceEEEEEech
Q 020660 237 AEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSSFDLIAQKR 315 (323)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~~gi~v~e~~~~~~dL~~adEvFltns~~gv~pV~~~~~ 315 (323)
|+|||+++++|+||||+.||++|+++|++|+|+.++++||..|||+|+|||++||+||.+.+.
T Consensus 208 ----------------l~TPpl~~~iL~GitR~~vl~~a~~~G~~v~E~~i~~~eL~~adevfltns~~gv~PV~~id~ 270 (292)
T 2xpf_A 208 ----------------LVAPDLRRCGVAGVMRAELLERAEGIGVPLAIRDVSMAELATADEVFLCNSQFGIWPVRALDE 270 (292)
T ss_dssp ----------------EEEECCSSSSBCCHHHHHHHHHHHHTTCCEEEECBCHHHHHTCSEEEEEETTTEEEEEEEETT
T ss_pred ----------------EEeCCCCCccCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHhCCEEEEEcCcccEEEEEEECC
Confidence 999999999999999999999999999999999999999999999999999999999998654
No 9
>4dqn_A Putative branched-chain amino acid aminotransfera; aminotransferase, transferase; 1.97A {Streptococcus mutans}
Probab=100.00 E-value=2e-46 Score=360.58 Aligned_cols=249 Identities=13% Similarity=0.105 Sum_probs=202.7
Q ss_pred EECCeeecCCCCCccCccccC---cCeeEEEEEEEcCCcc-----ccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCC
Q 020660 8 FSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSC-----LLFWERHLRRLASSARILYNSSPNLLFKSPTPSGL 79 (323)
Q Consensus 8 ~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~g~~~-----~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~~ 79 (323)
|+||+++ |.+++.++++|++ |||+|||||+++| + +|+|++|++||.+||+.|+|+
T Consensus 34 w~nG~~v-p~~~~~i~~~d~gl~yGdgvFE~ir~~~g--~dg~~~~f~l~~Hl~RL~~Sa~~L~i~-------------- 96 (345)
T 4dqn_A 34 WDDGKLT-EDATLHISESSPALHYGQEAFEGLKAYRT--KDGSVQLFRPNMNAERLQRTADRLLMP-------------- 96 (345)
T ss_dssp ECCCEEE-SCCSCCCCTTCHHHHSCCEEECCEEEEEC--TTSCEEEESHHHHHHHHHHHHHHTTCC--------------
T ss_pred EECCEEe-EhhhcccCccccccccccEEEEEEEEEeC--CCCcccccCHHHHHHHHHHHHHHhCCC--------------
Confidence 9999999 9999999999965 9999999999997 5 999999999999999999995
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEEec
Q 020660 80 EPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSG 159 (323)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~~~ 159 (323)
+++.++|.+.|.++++.+ ..++|. .....++|||++++++.+.+++ .+. ..++++|.+.|
T Consensus 97 --------~~~~~~l~~~i~~lv~~n-~~~vp~----~~~~~~~yiR~~v~~~~~~~g~------~p~-~~~~~~i~~~p 156 (345)
T 4dqn_A 97 --------QVPTDKFIDAAKQVVRAN-EEYVPP----YGTGATLYLRPLLIGVGDVIGV------HPA-DEYIFTIFAMP 156 (345)
T ss_dssp --------CCCHHHHHHHHHHHHHHT-GGGSCC----TTSSCEEEEEEEEEEESCCCSS------CCC-SEEEEEEEEEE
T ss_pred --------CCCHHHHHHHHHHHHHhc-cccCCC----CCCCCcEEEEEEEEeCCCccCC------CCC-CCeEEEEEEEE
Confidence 258999999999999843 122220 0022578999999988875543 322 35778888888
Q ss_pred CCCccccccCCCceEEEec-ccccccccccccccc-c---chHHH--hhCCCCCCeEEEecC--CCeEEecCcceEEEE-
Q 020660 160 YVPFVFGVEGTGARLALVG-RGRDVAEAKYSDWVR-L---RKPLE--KLRPPSVTELLLSND--GDQLLEGSITNFFVV- 229 (323)
Q Consensus 160 ~~~~~~~~~~~g~~l~~~~-~~r~~~~~k~~~~~~-~---~~~l~--~a~~~g~de~lL~~~--gg~v~Eg~~sNlF~v- 229 (323)
++++... ..+|+++.++. +.|..|... ...|. . .++++ +|+++|++|+|+.+. +|+|+|++++|||++
T Consensus 157 ~~~~~~~-~~~gv~l~~~~~~~R~~~~~~-~~~Kt~~nyl~~vla~~eA~~~G~de~l~ld~~~~g~v~E~~~sNif~v~ 234 (345)
T 4dqn_A 157 VGNYFKG-GLAPTNFLIQDDYDRAAPHGT-GAAKVGGNYAASLLPGKVAHERQFSDVIYLDPATHTKIEEVGSANFFGIT 234 (345)
T ss_dssp ECCSCTT-SCCCEEEEECTTCCSSCTTSS-TTSCCHHHHHHHHHHHHHHHHTTCSCEEEECTTTSCBEEEETTEEEEEEE
T ss_pred Ccccccc-CCCCEEEEEccceEecCCCcc-ccccccccCHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEcCCceEEEEe
Confidence 7654321 24689999888 578766432 44554 2 24444 688999999976654 459999999999998
Q ss_pred EcCCCCchhhhhhhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHh-CCCcEEEEecCHHHHhhcceeEEecCccceE
Q 020660 230 CRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRS-KGIPIRELASSWSQHELWKEAFITSKYSSSF 308 (323)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~-~gi~v~e~~~~~~dL~~adEvFltns~~gv~ 308 (323)
++++ |+||| ++++|+||||+.||++|++ +|++|+|+.++++||..|||+|+|||+++|+
T Consensus 235 ~~g~-------------------l~TP~-~~~iL~GitR~~vl~la~~~~g~~v~e~~i~~~el~~adevf~t~t~~~i~ 294 (345)
T 4dqn_A 235 KDNE-------------------FITPL-SPSILPSVTKYSLLYLAEHRFGMKAIEGDVCVDELDKFVEAGACGTAAVIS 294 (345)
T ss_dssp TTCE-------------------EEECC-CTTSCCCHHHHHHHHHHHHTTCCEEEECCCBTTCGGGEEEEEEEETTTEEE
T ss_pred cCCE-------------------EEeCC-CCCccHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHhhhHHhhhcchhHEE
Confidence 6777 99999 9999999999999999999 9999999999999999999999999999999
Q ss_pred EEEEech
Q 020660 309 DLIAQKR 315 (323)
Q Consensus 309 pV~~~~~ 315 (323)
||.+.+.
T Consensus 295 PV~~Id~ 301 (345)
T 4dqn_A 295 PIGGVQH 301 (345)
T ss_dssp EEEEEEE
T ss_pred EEEEECc
Confidence 9998543
No 10
>3dth_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP OBZ; 1.85A {Mycobacterium smegmatis} PDB: 3dtf_A* 3dtg_A* 3jz6_A* 3ht5_A*
Probab=100.00 E-value=5.8e-44 Score=346.14 Aligned_cols=255 Identities=15% Similarity=0.092 Sum_probs=202.3
Q ss_pred EEEECCeeecCCCCCccCccccC---cCeeEEEEEEE---cCCccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCC
Q 020660 6 IVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTH---NNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGL 79 (323)
Q Consensus 6 ~~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~---~g~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~~ 79 (323)
-.|.||+++ |.+++.+++.|++ |||+|||||++ +|+.++|++++|++||.+||++|+|+
T Consensus 52 ~~W~~g~i~-p~~~~~i~~~d~gl~yGdgvFEglkay~~~dG~i~lFrl~~H~~RL~~Sa~~L~mp-------------- 116 (372)
T 3dth_A 52 EGWHNAQVI-PYGPIQLDPSAIVLHYGQEIFEGLKAYRWADGSIVSFRPEANAARLQSSARRLAIP-------------- 116 (372)
T ss_dssp TEEEEEEEE-ESCCEEECTTCTHHHHCCEEECCEEEEECTTSCEEEESHHHHHHHHHHHHHHTTCC--------------
T ss_pred CeEECCcEe-ehHhcccCccccHhhcCcEEEEEEEEEECCCCcEeecCHHHHHHHHHHHHHHhCCC--------------
Confidence 379999999 9999999999865 99999999999 45223799999999999999999994
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcC-CCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEEe
Q 020660 80 EPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERR-DGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFS 158 (323)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~-~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~~ 158 (323)
+++.+.|.+.|.++++.+ ..++| .. .....|||++++++.+.+ |+.+ ...+.++|.+.
T Consensus 117 --------~~~~e~l~~~i~~lv~~n-~~~vp-----~~~~~~~lYiRp~~~~~~~~~------G~~p-~~~~~~~i~~~ 175 (372)
T 3dth_A 117 --------ELPEEVFIESLRQLIAVD-EKWVP-----PAGGEESLYLRPFVIATEPGL------GVRP-SNEYRYLLIAS 175 (372)
T ss_dssp --------CCCHHHHHHHHHHHHHHH-GGGSC-----CSSSSCEEEEEEEEEECCCCS------SCSC-CSEEEEEEEEE
T ss_pred --------CCCHHHHHHHHHHHHHhc-cccCC-----CCCCCCcEEEEEEEEcCCCcC------CcCC-CCCeEEEEEEe
Confidence 248999999999999854 33443 22 346789999999877544 3333 23577888888
Q ss_pred cCCCccccccCCCceEEEec-cccccccccccccccc----chHH--HhhCCCCCCeEEEecC--CCeEEecCcceEEEE
Q 020660 159 GYVPFVFGVEGTGARLALVG-RGRDVAEAKYSDWVRL----RKPL--EKLRPPSVTELLLSND--GDQLLEGSITNFFVV 229 (323)
Q Consensus 159 ~~~~~~~~~~~~g~~l~~~~-~~r~~~~~k~~~~~~~----~~~l--~~a~~~g~de~lL~~~--gg~v~Eg~~sNlF~v 229 (323)
|++++... ..+++++.++. +.|..|.. ....|.. .+++ .+|+++|++|+|+.+. +|+|+|++++|||++
T Consensus 176 p~~~y~~~-g~~~v~l~v~~~~~R~~p~g-~~~~K~~gNY~~~~la~~eA~~~G~de~l~ld~~~~g~v~E~~~sNif~v 253 (372)
T 3dth_A 176 PAGAYFKG-GIKPVSVWLSHEYVRASPGG-TGAAKFGGNYAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFV 253 (372)
T ss_dssp EESCSSSC-SSSCEEEEECSSCCSCCTTS-STTSCCHHHHHTTHHHHHHHHHTTCSEEEEECTTTSCBEEEETTEEEEEE
T ss_pred eCchhhcc-CCccEEEEEccceeccCCCc-ccchhhHhhhHHHHHHHHHHHHcCCCEEEEEcCCCCCEEEEcCceeEEEE
Confidence 87764321 23578887774 67776642 1233321 2334 4788999999976553 559999999999999
Q ss_pred EcCCCCchhhhhhhhcCCCCcc-EEEecCCCCCCCccHHHHHHHHHHHhCCCcEEEEecCHHHHhhc------ceeEEec
Q 020660 230 CRKDNSEAEDKFLQTCNNSHSF-EVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELW------KEAFITS 302 (323)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~-~l~TPpl~~giL~GitR~~vl~la~~~gi~v~e~~~~~~dL~~a------dEvFltn 302 (323)
+++. .+ +|+|||++.+|||||||+.||++|+++|++|+|++++++||.+| ||+|+||
T Consensus 254 ~~~~----------------~g~~l~TP~l~~~iL~GITR~~vl~la~~~G~~v~Er~i~~~eL~~a~~~g~~dEvf~tg 317 (372)
T 3dth_A 254 FGSG----------------GSARLVTPELSGSLLPGITRDSLLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVFACG 317 (372)
T ss_dssp ESCG----------------GGCEEEECCCCSSSCCCHHHHHHHHHHHHHTCEEEECCCBHHHHHHHHHHTSEEEEEEEE
T ss_pred ECCC----------------CceEEEECCCCCCcCHHHHHHHHHHHHHHCCCeEEEEECCHHHHHhhhhcCCccEEEEec
Confidence 9871 01 39999999999999999999999999999999999999999999 9999999
Q ss_pred CccceEEEEEec
Q 020660 303 KYSSSFDLIAQK 314 (323)
Q Consensus 303 s~~gv~pV~~~~ 314 (323)
|+++|+||.+.+
T Consensus 318 Ta~~i~PV~~Id 329 (372)
T 3dth_A 318 TAAVITPVSHVK 329 (372)
T ss_dssp TTTEEEEEEEEE
T ss_pred ccceEEEEEEEc
Confidence 999999999864
No 11
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A {Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A* 1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A* 2hgx_A* 2hdk_A*
Probab=100.00 E-value=6.7e-44 Score=345.53 Aligned_cols=257 Identities=16% Similarity=0.124 Sum_probs=199.8
Q ss_pred EEEECCeeecCCCCCccCccccC---cCeeEEEEEEEcC-Cc--cccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCC
Q 020660 6 IVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNN-GS--CLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGL 79 (323)
Q Consensus 6 ~~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~g-~~--~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~~ 79 (323)
.+|+||+++ |.+++.+++.|++ |||+|||||+++| .+ ++|+|++|++||.+||+.|+|+
T Consensus 46 ~~w~ng~~~-p~~~~~i~~~d~~l~yG~gvFEt~r~y~g~dG~i~~f~l~~Hl~RL~~Sa~~l~~~-------------- 110 (365)
T 2a1h_A 46 KGWGQPRIQ-PFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLP-------------- 110 (365)
T ss_dssp TEECCCEEE-ESCCEEECTTBHHHHSCCEEECCEEEEECTTSCEEEESHHHHHHHHHHHHHHTTCC--------------
T ss_pred CeEECCEEe-EcccceeCccchhhhcCceeEeEEEEEecCCCceeecCHHHHHHHHHHHHHHhCCC--------------
Confidence 479999999 9999999999854 9999999999965 12 4699999999999999999994
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEEec
Q 020660 80 EPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSG 159 (323)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~~~ 159 (323)
+++.++|.+.|.++++.+ ..++| .....+.+||++++++.+.++ +.+. ..++++|.+.|
T Consensus 111 --------~~~~~~l~~~i~~lv~~~-~~~~p-----~~~g~~~yiR~~~~~~~~~~g------~~p~-~~~~~~i~~~p 169 (365)
T 2a1h_A 111 --------SFDKLELLECIRRLIEVD-KDWVP-----DAAGTSLYVRPVLIGNEPSLG------VSQP-RRALLFVILCP 169 (365)
T ss_dssp --------CCCHHHHHHHHHHHHHHT-GGGSC-----CSTTCEEEEEEEEEECCBCCS------CSCC-SEEEEEEEEEE
T ss_pred --------CCCHHHHHHHHHHHHHhc-cccCC-----CCCCceEEEEEEEEecCCccC------CCCC-CCcEEEEEEEE
Confidence 358999999999999843 12222 112246899999998876543 3322 36778888888
Q ss_pred CCCccccccCCCceEEEecc-ccccc----cccc-ccccccchHH--HhhCCCCCCeEEEe-cCCCeEEecCcceEEEEE
Q 020660 160 YVPFVFGVEGTGARLALVGR-GRDVA----EAKY-SDWVRLRKPL--EKLRPPSVTELLLS-NDGDQLLEGSITNFFVVC 230 (323)
Q Consensus 160 ~~~~~~~~~~~g~~l~~~~~-~r~~~----~~k~-~~~~~~~~~l--~~a~~~g~de~lL~-~~gg~v~Eg~~sNlF~v~ 230 (323)
+++.......+++++.++.. .|..| ..|. .+|. .+++ .+|+++|++|+|+. +.+|+|+|++++|||+++
T Consensus 170 ~~~~~~~g~~~~v~l~~~~~~~R~~~~~~~~~Kt~~ny~--~~~la~~eA~~~G~de~L~l~d~~G~V~E~~~sNif~v~ 247 (365)
T 2a1h_A 170 VGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYG--PTVLVQQEALKRGCEQVLWLYGPDHQLTEVGTMNIFVYW 247 (365)
T ss_dssp ECCSSSSSSCCCEEEEECTTCCSCCTTSSTTSCBGGGTT--THHHHHHHHHHTTCSEEEEEETTTTEEEEETTEEEEEEE
T ss_pred CccccccccccceEEEEccccccCCCCccchhchhhccH--HHHHHHHHHHHcCCCeEEEEECCCCeEEEcCceEEEEEE
Confidence 87643221135688888874 66555 3343 2222 2344 47889999999665 655699999999999997
Q ss_pred cCCCCchhhhhhhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHh-CCCcEEEEecCHHHHhhc------ceeEEecC
Q 020660 231 RKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRS-KGIPIRELASSWSQHELW------KEAFITSK 303 (323)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~-~gi~v~e~~~~~~dL~~a------dEvFltns 303 (323)
++. +|..+|+|||+++++||||||+.||++|++ .|++|+|+.++++||..| ||+|+|||
T Consensus 248 ~~~--------------dg~~~l~TP~l~~~iL~GITR~~vl~la~~~~G~~v~Er~i~~~eL~~A~~~g~~dEvf~tnt 313 (365)
T 2a1h_A 248 THE--------------DGVLELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGT 313 (365)
T ss_dssp ECT--------------TSCEEEEECCCSSSSCCCHHHHHHHHHHHHHTSSEEEECCCBHHHHHHHHHTTCEEEEEEEET
T ss_pred ecC--------------CCcEEEEeCCCCCCccccHHHHHHHHHHHhcCCCceEEEeCCHHHHHHHHhcCCccEEEEcCC
Confidence 410 011249999999999999999999999999 499999999999999999 99999999
Q ss_pred ccceEEEEEec
Q 020660 304 YSSSFDLIAQK 314 (323)
Q Consensus 304 ~~gv~pV~~~~ 314 (323)
+++|+||.+.+
T Consensus 314 ~~~i~PV~~i~ 324 (365)
T 2a1h_A 314 ACQVCPVHRIL 324 (365)
T ss_dssp TTEEEEEEEEE
T ss_pred eeEEEEEEEEE
Confidence 99999999865
No 12
>3uzo_A Branched-chain-amino-acid aminotransferase; BCAT, amino-acid biosynthesis, branched-CH acid biosynthesis, pyridoxal phosphate, L-GLUT; HET: PLP GLU; 2.00A {Deinococcus radiodurans} PDB: 3uzb_A* 3uyy_A*
Probab=100.00 E-value=5.2e-44 Score=345.24 Aligned_cols=251 Identities=13% Similarity=0.119 Sum_probs=197.5
Q ss_pred EECCeeecCCCCCccCccccC---cCeeEEEEEEEc---CCccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCCC
Q 020660 8 FSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHN---NGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEP 81 (323)
Q Consensus 8 ~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~---g~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~~~~ 81 (323)
|+||+++ |.+++.+++.|++ |||+|||||+++ |+.++|+|++|++||.+||+.|+|+
T Consensus 49 w~ng~i~-p~~~~~i~~~d~gl~yGdgvFE~ir~y~~~dG~i~lfrl~~Hl~RL~~Sa~~L~ip---------------- 111 (358)
T 3uzo_A 49 WDAGTLT-EDNQIHLAEGSTALHYGQQCFEGLKAYRCADGSINLFRPDQNAARMRMSCRRLLMP---------------- 111 (358)
T ss_dssp ECCCEEE-SCCEEEEETTCHHHHSCCEEECCEEEEECTTSCEEECCHHHHHHHHHHHHHHTTCC----------------
T ss_pred EECCEEe-EcccceeChHHcceecCcEEEEEEEEEECCCCcEeecCHHHHHHHHHHHHHHhCCC----------------
Confidence 9999999 9999999998864 999999999995 4223789999999999999999994
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEEecCC
Q 020660 82 IRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYV 161 (323)
Q Consensus 82 ~~~~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~~~~~ 161 (323)
+++.++|.+.|.++++.+ ..++|. .....++|||++++++.+.+| +.+. ..+.+++.+.|.+
T Consensus 112 ------~~~~e~l~~~i~~lv~~n-~~~vp~----~~~~~~~yiR~~v~~~~~~~G------~~p~-~~~~~~i~~~P~~ 173 (358)
T 3uzo_A 112 ------ELSDEQFIDACLQVVRAN-EHFLPP----YGTGGSLYLRPFVIGVGDNIG------VRTA-PEFIFSVFCVPVG 173 (358)
T ss_dssp ------CCCHHHHHHHHHHHHHHT-GGGSCC----TTSCCEEEEEEEEEEESSCCS------SSCC-SEEEEEEEEEEEC
T ss_pred ------CCCHHHHHHHHHHHHHHc-CCcCCC----CCCCceEEEEEEEEecCCccc------cCCC-CCeEEEEEEecCh
Confidence 358999999999999853 223320 012357899999998886553 3322 3467777777776
Q ss_pred CccccccCCCceEEEecccccccccccccccc-c---chHHH--hhCCCCCCeEEEecC--CCeEEecCcceEEEEEc-C
Q 020660 162 PFVFGVEGTGARLALVGRGRDVAEAKYSDWVR-L---RKPLE--KLRPPSVTELLLSND--GDQLLEGSITNFFVVCR-K 232 (323)
Q Consensus 162 ~~~~~~~~~g~~l~~~~~~r~~~~~k~~~~~~-~---~~~l~--~a~~~g~de~lL~~~--gg~v~Eg~~sNlF~v~~-~ 232 (323)
++.. ...+|+++.++.+.|..|... .+.|. . .++++ +|+++|++|+|+.+. .|+|+|++++|||++++ |
T Consensus 174 ~~~~-~g~~~v~l~~~~~~R~~p~~~-~~~K~~~NYl~~vla~~eA~~~G~~e~l~ld~~~~g~V~E~~~sNif~v~~dg 251 (358)
T 3uzo_A 174 PYFK-GGLTPTNFITSDYDRAAPHGT-GAAKVGGNYAASLLPGYEAKKRDFADVIYLDPATHTTIEEAGAANFFAITQDG 251 (358)
T ss_dssp CSSC-SSSCCEEEECCSCCSSCTTSS-TTSCBHHHHHHHHHHHHHHHHTTCSEECCBCTTTSCBBCBCSSSEEEEEETTS
T ss_pred hhhh-cCCccEEEEEEeeeccCCCcc-ccccchhhhHHHHHHHHHHHHcCCCEEEEEeCCCCCeEEEcCCeeEEEEECCC
Confidence 5421 113468888888888777431 23342 2 23444 688999999976554 25999999999999964 4
Q ss_pred CCCchhhhhhhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHh-CCCcEEEEecCHHHHhhcceeEEecCccceEEEE
Q 020660 233 DNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRS-KGIPIRELASSWSQHELWKEAFITSKYSSSFDLI 311 (323)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~-~gi~v~e~~~~~~dL~~adEvFltns~~gv~pV~ 311 (323)
+ +|+||| ++++|+||||+.||++|++ +|++|+|+.++++||..|||+|+|||+++|+||.
T Consensus 252 ~------------------~l~TP~-~~~iL~GItR~~vl~la~~~~g~~v~e~~i~~~eL~~adEvf~t~t~~~i~PV~ 312 (358)
T 3uzo_A 252 Q------------------KFVTPQ-SPSILPSITKYSLLWLAEHRLGLEVEEGDIRIDELGKFSEAGACGTAAVITPIG 312 (358)
T ss_dssp C------------------EEEEEC-CTTSCCCHHHHHHHHHHHHTTCCEEEEECCBTTCGGGEEEEEEECTTTSSEEEE
T ss_pred e------------------EEEECC-cCCcccCHHHHHHHHHHHhhcCCeEEEEECCHHHHHhhcceeEEcCcceEEEEE
Confidence 2 299999 8999999999999999999 9999999999999999999999999999999999
Q ss_pred Eec
Q 020660 312 AQK 314 (323)
Q Consensus 312 ~~~ 314 (323)
+.+
T Consensus 313 ~Id 315 (358)
T 3uzo_A 313 GIQ 315 (358)
T ss_dssp EEE
T ss_pred EEC
Confidence 854
No 13
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831, putative branched-chain amino acid aminotransferase; HET: PLP CIT; 2.15A {Thermotoga maritima MSB8}
Probab=100.00 E-value=7.8e-44 Score=334.29 Aligned_cols=229 Identities=21% Similarity=0.185 Sum_probs=186.7
Q ss_pred EECCeeecCCCCCccCccccC-cCeeEEEEEEEcCCccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCCCCCCCC
Q 020660 8 FSNGVVSQASDTPSVSTFLQE-RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPS 86 (323)
Q Consensus 8 ~~nG~~~~~~~~~~is~~~~~-G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~~~~~~~~~ 86 (323)
|.+|+++ +...+.++++|++ |||+|||||+++| ++|+|++|++||.+||+.|+++.
T Consensus 18 ~~~~~~~-~~~~~~i~~~d~g~G~gvFEtir~~~G--~~~~l~~Hl~RL~~Sa~~l~~~~-------------------- 74 (285)
T 3csw_A 18 RGKFRRA-DEISLDFSLFEKSLQGAVYETLRTYSR--APFAAYKHYTRLKRSADFFNLPL-------------------- 74 (285)
T ss_dssp TTEEEES-SEEEEEHHHHHHHTTCCEEEEEEEETT--EETTHHHHHHHHHHHHHTTTCCC--------------------
T ss_pred ccCceEc-ccccCEeCCcccccceeeEEEEEEECC--EECCHHHHHHHHHHHHHHhCCCC--------------------
Confidence 4688899 8888899998876 8999999999998 89999999999999999999953
Q ss_pred CCCCHHHHHHHHHHHHHhhhhccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEEecCCCcccc
Q 020660 87 SSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFG 166 (323)
Q Consensus 87 ~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~~~~~~~~~~ 166 (323)
+++.++|.+.+.++++ .++ .+++||+++.... .++++.+.|+++..
T Consensus 75 -p~~~~~l~~~i~~~~~-------------~~~-~~~~iR~~v~~~~-----------------~~~~i~~~p~~~~~-- 120 (285)
T 3csw_A 75 -SLSFDEFTKVLKAGAD-------------EFK-QEVRIKVYLFPDS-----------------GEVLFVFSPLNIPD-- 120 (285)
T ss_dssp -SSCHHHHHHHHHHHHT-------------TCS-SCEEEEEEECTTT-----------------CCEEEEEEECCCCC--
T ss_pred -CCCHHHHHHHHHHHHH-------------hhC-CCeEEEEEEEcCC-----------------CEEEEEEEeCCCcc--
Confidence 3588999999888886 343 6789999993110 03566677877643
Q ss_pred ccCCCceEEEeccccccc-----ccccccccccchHHHhhCCCCCCeEEEecCCCeEEecCcceEEEEEcCCCCchhhhh
Q 020660 167 VEGTGARLALVGRGRDVA-----EAKYSDWVRLRKPLEKLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKF 241 (323)
Q Consensus 167 ~~~~g~~l~~~~~~r~~~-----~~k~~~~~~~~~~l~~a~~~g~de~lL~~~gg~v~Eg~~sNlF~v~~~~~~~~~~~~ 241 (323)
..+|+++.++..+|... ..|..++ ..+++++...+.+||+|+.|.+|+|+||+++|||++++|+
T Consensus 121 -~~~~~~l~~~~~~~~~~~~~~~~~Kt~~~--l~~~la~~~A~~~de~L~ld~~G~V~Egs~sNif~v~~g~-------- 189 (285)
T 3csw_A 121 -LETGVEVKISNVRRIPDLSTPPALKITGR--TDIVLARREIVDCYDVILLGLNGQVCEGSFSNVFLVKEGK-------- 189 (285)
T ss_dssp -CTTCEEEEECSSCCCCTTTSCTTCCBTTC--HHHHHHHTTCSSSSEEEEECTTSBEEEESSSEEEEEETTE--------
T ss_pred -ccCCeEEEEEeEEecCCCCCCCccchhcc--HHHHHHHHHHHhCCeEEEECCCCcEEEcCceEEEEEECCE--------
Confidence 24688888887766432 3444432 2355554322229999877755599999999999999988
Q ss_pred hhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHhCCCcEEEEecCHHHHhhcceeEEecCccceEEEEEech
Q 020660 242 LQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSSFDLIAQKR 315 (323)
Q Consensus 242 ~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~~gi~v~e~~~~~~dL~~adEvFltns~~gv~pV~~~~~ 315 (323)
|+|||+++|+|+||||+.||++|+++|++|+|+.++++||..|||+|+|||++||+||.+.+.
T Consensus 190 -----------l~TP~l~~~iL~GitR~~ll~~a~~~g~~v~E~~i~~~dL~~adevfltns~~gv~PV~~id~ 252 (285)
T 3csw_A 190 -----------LITPSLDSGILDGITRENVIKLAKSLEIPVEERVVWVWELFEADEMFLTHTSAGVVPVRRLNE 252 (285)
T ss_dssp -----------EEEECGGGTCCCCHHHHHHHHHHHHTTCCEEEECCBHHHHHTCSEEEEEETTTEEEEEEEETT
T ss_pred -----------EEeCCCCCCccCCHHHHHHHHHHHHCCCeEEEEeCCHHHHhhCCEEEEecCcceEEEEEEECC
Confidence 999999999999999999999999999999999999999999999999999999999998643
No 14
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme; HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A* 2abj_A*
Probab=100.00 E-value=4.5e-43 Score=341.84 Aligned_cols=256 Identities=14% Similarity=0.062 Sum_probs=198.3
Q ss_pred EEEECCeeecCCCCCccCcccc---CcCeeEEEEEEEcC--C-ccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCC
Q 020660 6 IVFSNGVVSQASDTPSVSTFLQ---ERRGAYTTTRTHNN--G-SCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGL 79 (323)
Q Consensus 6 ~~~~nG~~~~~~~~~~is~~~~---~G~GvFEt~r~~~g--~-~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~~ 79 (323)
..|+||+++ |.+++.+++.|+ +|+|+|||||+++| + .++|+|++|++||.+||+.|+|+
T Consensus 66 ~~w~ng~~~-p~~~~~i~~~d~~l~yG~gvFEg~k~y~g~dg~i~~frld~H~~RL~~Sa~~l~~p-------------- 130 (386)
T 2coi_A 66 FGWEKPHIK-PLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFQPNLNMDRMYRSAVRATLP-------------- 130 (386)
T ss_dssp TEECCCEEE-ECCCEEECTTCHHHHSCCEEECCEEEEECTTSCEEEESHHHHHHHHHHHHHHTTCC--------------
T ss_pred cEEECCEEe-ecccCccCcccchhhcCceeEEEEEEEeCCCCceeecCHHHHHHHHHHHHHhcCCC--------------
Confidence 469999999 999999999985 49999999999987 1 25999999999999999999994
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEEec
Q 020660 80 EPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSG 159 (323)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~~~ 159 (323)
+++.++|.+.|.++++.+ ..|+| .......|||++++++.+.++ +.+. ..+.++|.+.|
T Consensus 131 --------~~~~e~~~~~i~~lv~~~-~~~vp-----~~~g~~~yiR~~~~~~~~~~g------~~p~-~~~~~~i~~~p 189 (386)
T 2coi_A 131 --------VFDKEELLECIQQLVKLD-QEWVP-----YSTSASLYIRPTFIGTEPSLG------VKKP-TKALLFVLLSP 189 (386)
T ss_dssp --------CCCHHHHHHHHHHHHHHT-GGGSC-----SSSSCEEEEEEEEEECCCSCS------CSCC-SEEEEEEEEEE
T ss_pred --------CCCHHHHHHHHHHHHHhc-cccCC-----CCCCccEEEEEEEEecCCccc------cCCC-CCcEEEEEEEE
Confidence 358999999999999843 22332 112357899999997765443 3322 36788888888
Q ss_pred CCCccccccCCCceEEEecc-cccccc----ccc-ccccccchHHHhhCCCCCCeEEEec-CCCeEEecCcceEEEEE--
Q 020660 160 YVPFVFGVEGTGARLALVGR-GRDVAE----AKY-SDWVRLRKPLEKLRPPSVTELLLSN-DGDQLLEGSITNFFVVC-- 230 (323)
Q Consensus 160 ~~~~~~~~~~~g~~l~~~~~-~r~~~~----~k~-~~~~~~~~~l~~a~~~g~de~lL~~-~gg~v~Eg~~sNlF~v~-- 230 (323)
++++......+++++.++.. .|..|. .|. .+|........+|+++|+||+|+.+ .+|+|+|++++|||+++
T Consensus 190 ~~~y~~~~~~~~v~l~~~~~~~r~~p~~~g~~K~~~Ny~~~~la~~eA~~~G~de~L~ld~~~g~V~E~~~sNiF~v~~~ 269 (386)
T 2coi_A 190 VGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDNGCQQVLWLYGEDHQITEVGTMNLFLYWIN 269 (386)
T ss_dssp ECCCC-----CCEEEEECTTCCSCCTTSSTTSCCTHHHHTTHHHHHHHHTTTCSEEEEEETTTTEEEEETTEEEEEEEEC
T ss_pred CcccccccccccEEEEEcccccccCCCcccccccccChHHHHHHHHHHHHcCCCEEEEEECCCCEEEEeCCceEEEEEEc
Confidence 87653221135788888875 465553 332 2222222233468899999996554 44499999999999997
Q ss_pred -cCCCCchhhhhhhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHh-CCCcEEEEecCHHHHhhc------ceeEEec
Q 020660 231 -RKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRS-KGIPIRELASSWSQHELW------KEAFITS 302 (323)
Q Consensus 231 -~~~~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~-~gi~v~e~~~~~~dL~~a------dEvFltn 302 (323)
+| +.+|+|||++++|||||||+.||++|++ +|++|+|+.++++||.+| ||+|+||
T Consensus 270 ~~g-----------------~~~l~TP~l~~~iL~GITR~~vl~la~~~~G~~V~Er~i~~~eL~~A~~~g~~dEvF~tg 332 (386)
T 2coi_A 270 EDG-----------------EEELATPPLDGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFGSG 332 (386)
T ss_dssp TTS-----------------CEEEEECCCSSSSCCCHHHHHHHHHHHHHCSSEEEECCCBHHHHHHHHTTTCEEEEEEEE
T ss_pred CCC-----------------CEEEEECCCCCCccHHHHHHHHHHHHHhccCCcEEEEECCHHHHHHHHhcCCccEEEEec
Confidence 55 0139999999999999999999999999 899999999999999999 9999999
Q ss_pred CccceEEEEEec
Q 020660 303 KYSSSFDLIAQK 314 (323)
Q Consensus 303 s~~gv~pV~~~~ 314 (323)
|+++|+||.+.+
T Consensus 333 Ta~~i~PV~~I~ 344 (386)
T 2coi_A 333 TACVVCPVSDIL 344 (386)
T ss_dssp TTTEEEEEEEEE
T ss_pred ceeEEEEEEEEe
Confidence 999999999865
No 15
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor, pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A {Thermus thermophilus}
Probab=100.00 E-value=1.9e-43 Score=324.86 Aligned_cols=219 Identities=20% Similarity=0.211 Sum_probs=175.0
Q ss_pred EEEECCeeecCCCCCccCcccc---C-cCeeEEEEEEEcCCccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCCC
Q 020660 6 IVFSNGVVSQASDTPSVSTFLQ---E-RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEP 81 (323)
Q Consensus 6 ~~~~nG~~~~~~~~~~is~~~~---~-G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~~~~ 81 (323)
|+|+||+.. ++++|+ + |+|+|||||+++| ++++|++|++||.+||+.|+++.|
T Consensus 1 m~~~nG~~~-------~~~~d~g~~y~G~gvFEtir~~~G--~~~~l~~Hl~RL~~Sa~~l~~~~p-------------- 57 (246)
T 2zgi_A 1 MRLLNGTPL-------ALALPEAFLYHGASVFTTLRAEGG--RPLWLEEHLARLRRHALALGLSYP-------------- 57 (246)
T ss_dssp CEEETTEEC-------CCSSCHHHHHSCCCEEEEEEEETT--EETTHHHHHHHHHHHHHHTTCCCC--------------
T ss_pred CEEECCccc-------CCCccCcccccCeeEEEEEEEECC--EeCCHHHHHHHHHHHHHHhCCCCC--------------
Confidence 389999977 256664 4 8999999999998 899999999999999999999543
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcC-CCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEEecC
Q 020660 82 IRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERR-DGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGY 160 (323)
Q Consensus 82 ~~~~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~-~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~~~~ 160 (323)
++ ++|.+.|.++++ .+ +..+++||++++++.+.+ ...|+
T Consensus 58 -------~~-~~l~~~i~~~~~-------------~~~~~~~~~vR~~v~~g~~~~-------------------~~~p~ 97 (246)
T 2zgi_A 58 -------GD-EAFLEDLEALLR-------------AFPKAPCLRLRFTVGEGVRLS-------------------EARPY 97 (246)
T ss_dssp -------CH-HHHHHHHHHHTT-------------SCTTCSEEEEEEEEETTEEEE-------------------EEEEC
T ss_pred -------CH-HHHHHHHHHHHH-------------hcCCCCCEEEEEEEECCCCcc-------------------CcCcC
Confidence 45 788888887775 34 457899999999876321 11333
Q ss_pred CCccccccCCCceEEEeccccccc---ccccccccccchHH--HhhCCCCCCeEEEecCCCeEEecCcceEEEEEcCCCC
Q 020660 161 VPFVFGVEGTGARLALVGRGRDVA---EAKYSDWVRLRKPL--EKLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNS 235 (323)
Q Consensus 161 ~~~~~~~~~~g~~l~~~~~~r~~~---~~k~~~~~~~~~~l--~~a~~~g~de~lL~~~gg~v~Eg~~sNlF~v~~~~~~ 235 (323)
++.....+.+|+++.++.. |..| ..|..++ ..+++ .+|+++|+||+|+.|.+|+|+||+++|||++++|+
T Consensus 98 ~~~~~~~~~~g~~l~~~~~-r~~~~~~~~Kt~n~--~~~~~a~~~A~~~g~de~l~ld~~G~v~Egs~sNif~v~~g~-- 172 (246)
T 2zgi_A 98 APLPLSLYREGVRVRLTGY-RVHPDLARYKTGNY--LPYRLALEEARKEGAFEGLLLDAFGHVVDGSRTSPLLFREGT-- 172 (246)
T ss_dssp CCCCTHHHHHCBCEEEEEE-ECCTTTTTSCBSCC--HHHHHHHHHHHTTTCSEEEEECTTSCEEEESSSEEEEEETTE--
T ss_pred CCCchhHhhcCeEEEEecc-cCCCCCccchhhhh--HHHHHHHHHHHHcCCCEEEEECCCCCEEEcCCeEEEEEECCE--
Confidence 3322222345888888887 6655 3444432 22344 36889999999877755599999999999999988
Q ss_pred chhhhhhhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHhCCCcEEEEecCHHHHhhcceeEEecCccceEEEEEec
Q 020660 236 EAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSSFDLIAQK 314 (323)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~~gi~v~e~~~~~~dL~~adEvFltns~~gv~pV~~~~ 314 (323)
|+|| +++|+||||+.||++|+++|++|+|+.++++||.. |+|+|||++||+||.+.+
T Consensus 173 -----------------l~TP---~~iL~GitR~~ll~~a~~~g~~v~E~~i~~~dL~~--evfltns~~gi~pV~~id 229 (246)
T 2zgi_A 173 -----------------LYLL---EGGLEGITREKVAEAARGLGLRVERGLFRPEGLRG--HLLLAGSGVGLLPVRPPP 229 (246)
T ss_dssp -----------------EEEE---CSSCCCHHHHHHHHHHHHTTCEEEEECCCGGGCCS--EEEEEETTTEEEEBSSCC
T ss_pred -----------------EECC---CCccCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHh--hHeeecChhheEEEEEEC
Confidence 9999 88999999999999999999999999999999998 999999999999998744
No 16
>3dtg_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP; 1.90A {Mycobacterium smegmatis} PDB: 3dtf_A* 3jz6_A* 3ht5_A*
Probab=100.00 E-value=1.3e-42 Score=337.13 Aligned_cols=256 Identities=14% Similarity=0.085 Sum_probs=194.8
Q ss_pred EEECCeeecCCCCCccCccccC---cCeeEEEEEEE---cCCccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCC
Q 020660 7 VFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTH---NNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLE 80 (323)
Q Consensus 7 ~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~---~g~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~~~ 80 (323)
-|.||+++ |.+++++++++++ |+||||+||+| +|+..+|++++|++||.+||+.|+|+.
T Consensus 53 gW~ng~iv-p~~~~~i~p~~~~lhYG~gvFEgiraY~~~dG~i~~Fr~~~h~~Rl~~Sa~~l~iP~-------------- 117 (372)
T 3dtg_A 53 GWHNAQVI-PYGPIQLDPSAIVLHYGQEIFEGLKAYRWADGSIVSFRPEANAARLQSSARRLAIPE-------------- 117 (372)
T ss_dssp EEEEEEEE-ESCCEEECTTCTHHHHCCEEECCEEEEECTTSCEEEESHHHHHHHHHHHHHHTTCCC--------------
T ss_pred cEeCCEEE-EchhceeCcchhhhhccceeeeeEEEEECCCCeEEeeCchHHHHHHhhcccccCCCC--------------
Confidence 49999999 9999999999854 99999999999 453335899999999999999999942
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEEecC
Q 020660 81 PIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGY 160 (323)
Q Consensus 81 ~~~~~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~~~~ 160 (323)
.+.+.+...+.++++.. .+++| ..+...+.|||++++++.+.+ |+.+ ...+.+++.+.|.
T Consensus 118 --------~~~e~~~~~~~~l~~~~-~~~v~----~~~~~~~~YiRp~~~~~~~~l------gv~p-~~~~~~~ii~~p~ 177 (372)
T 3dtg_A 118 --------LPEEVFIESLRQLIAVD-EKWVP----PAGGEESLYLRPFVIATEPGL------GVRP-SNEYRYLLIASPA 177 (372)
T ss_dssp --------CCHHHHHHHHHHHHHHH-GGGSC----CSSSSCEEEEEEEEEECCCCC------SCSC-CSEEEEEEEEEEE
T ss_pred --------CCHHHHHHHHHHHHHHh-hhhcc----ccCCCCceEEEEEEEeecCcc------CcCC-CCCceeeeEeccc
Confidence 36788888888888754 45554 123347899999999987643 4443 2345666667776
Q ss_pred CCccccccCCCceEE-Eecccccccccccccccccc----hHH--HhhCCCCCCeEEEec--CCCeEEecCcceEEEEEc
Q 020660 161 VPFVFGVEGTGARLA-LVGRGRDVAEAKYSDWVRLR----KPL--EKLRPPSVTELLLSN--DGDQLLEGSITNFFVVCR 231 (323)
Q Consensus 161 ~~~~~~~~~~g~~l~-~~~~~r~~~~~k~~~~~~~~----~~l--~~a~~~g~de~lL~~--~gg~v~Eg~~sNlF~v~~ 231 (323)
.++...... ...+. .....|..|.... ..|... +++ .+|+++||||+|+.+ ++|+|+|++++|||+|++
T Consensus 178 ~~~~~~~~~-~~~~~~~~~~~R~~p~~~~-~~K~~gNY~~~~la~~eA~~~G~deal~Ld~~~~g~V~E~~~sNiF~V~~ 255 (372)
T 3dtg_A 178 GAYFKGGIK-PVSVWLSHEYVRASPGGTG-AAKFGGNYAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFG 255 (372)
T ss_dssp SCSSTTSSS-CEEEEECSSCCSCCTTSST-TSCCHHHHHHHHHHHHHHHHTTCSEEEEECTTTSCBEEEETTEEEEEEES
T ss_pred ccccccCcc-cceeecccceeecCcCCcc-hHHhcCCcchhhhHHHHHHhcCcchhhhhccccccceeecCceEEEEEEe
Confidence 655432212 23333 3345676664322 222221 233 368899999996543 345999999999999964
Q ss_pred CCCCchhhhhhhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHhCCCcEEEEecCHHHHhhc------ceeEEecCcc
Q 020660 232 KDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELW------KEAFITSKYS 305 (323)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~~gi~v~e~~~~~~dL~~a------dEvFltns~~ 305 (323)
+. +.++|+|||++++||+||||+.||++|+++|++|+|+.++++||..| ||||+|||+.
T Consensus 256 ~~---------------kdg~liTPpl~~~iL~GITR~sVi~LA~~~Gi~V~Er~it~~El~~A~~~~~~dEvF~tGTaa 320 (372)
T 3dtg_A 256 SG---------------GSARLVTPELSGSLLPGITRDSLLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVFACGTAA 320 (372)
T ss_dssp CG---------------GGCEEEECCCCSSSCCCHHHHHHHHHHHHHTCEEEECCCBHHHHHHHHHHTSEEEEEEEETTT
T ss_pred cC---------------CCceEEeCCccccccccHHHHHHHHHHHHCCceEEEEeCCHHHHHHHhhcCCCcEEEECCCcc
Confidence 31 23459999999999999999999999999999999999999999988 9999999999
Q ss_pred ceEEEEEec
Q 020660 306 SSFDLIAQK 314 (323)
Q Consensus 306 gv~pV~~~~ 314 (323)
+|+||.+.+
T Consensus 321 ~I~PV~~Id 329 (372)
T 3dtg_A 321 VITPVSHVK 329 (372)
T ss_dssp EEEEEEEEE
T ss_pred eEEEEEEEe
Confidence 999999864
No 17
>3qqm_A MLR3007 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, transferase; HET: LLP; 2.30A {Mesorhizobium loti}
Probab=100.00 E-value=2.7e-40 Score=299.63 Aligned_cols=199 Identities=20% Similarity=0.218 Sum_probs=163.5
Q ss_pred CcCeeEEEEEEE-cCCccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhh
Q 020660 28 ERRGAYTTTRTH-NNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSSSLSMWESMIKSLVNDSM 106 (323)
Q Consensus 28 ~G~GvFEt~r~~-~g~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lv~~~~ 106 (323)
.|+|+|||||++ +| ++++|++|++||.+||+.|+++ ++.++|.+.|.++++
T Consensus 14 ~g~glFEtir~~~~G--~~~~l~~Hl~RL~~Sa~~l~~~-----------------------~~~~~l~~~i~~~~~--- 65 (221)
T 3qqm_A 14 ADFELIETMRWQPGT--SFLRFDRHLARLYGSAAELGFA-----------------------CDPQRIAEVLSDALD--- 65 (221)
T ss_dssp SCCEEEEEEEEETTT--EETTHHHHHHHHHHHHHHHTCC-----------------------CCHHHHHHHHHHHHT---
T ss_pred CCCEEEEEEEEecCC--cCcCHHHHHHHHHHHHHHcCCC-----------------------CCHHHHHHHHHHHHh---
Confidence 389999999999 88 8999999999999999999983 367888888877774
Q ss_pred hccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEEecCCCccccccCCCceEEEeccccccccc
Q 020660 107 NEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLALVGRGRDVAEA 186 (323)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~r~~~~~ 186 (323)
++..+++||+++++++ .+.+.+.|+++... .+|+++.++..+|..+.
T Consensus 66 -----------~~~~~~~iR~~~~~~g------------------~~~i~~~p~~~~~~---~~~~~l~~~~~~~~~~~- 112 (221)
T 3qqm_A 66 -----------GARTAMRTRLALARNG------------------DATASAQPYEPLAA---DKVWILRLARTRLDSQN- 112 (221)
T ss_dssp -----------TCCSCEEEEEEEETTS------------------CEEEEEEECCCCCT---TCCEEEEECSCCBCTTC-
T ss_pred -----------cCCCCEEEEEEEEcCC------------------CEEEEEEcCCCCCC---CCCEEEEEeeeEecCCC-
Confidence 2356789999999753 13456678776532 36889999987775432
Q ss_pred ccccccccc---hHHH--hhCCCCCCeEEEecCCCeEEecCcceEEEEEc-CCCCchhhhhhhhcCCCCccEEEecCCCC
Q 020660 187 KYSDWVRLR---KPLE--KLRPPSVTELLLSNDGDQLLEGSITNFFVVCR-KDNSEAEDKFLQTCNNSHSFEVQTAPISD 260 (323)
Q Consensus 187 k~~~~~~~~---~~l~--~a~~~g~de~lL~~~gg~v~Eg~~sNlF~v~~-~~~~~~~~~~~~~~~~~~~~~l~TPpl~~ 260 (323)
....+|+.+ +.++ +|+++|+||+|+.|.+|+|+||+++|||++++ ++ |+|||+++
T Consensus 113 ~~~~~Kt~nr~~~~~a~~~a~~~g~~e~l~l~~~g~v~E~s~sNif~~~~~~~-------------------l~TP~~~~ 173 (221)
T 3qqm_A 113 TLLRHKTSRRQLYTHARSEYLVTQADEVLLANERGEICEGTITNVFADFGDGV-------------------LATPRLDC 173 (221)
T ss_dssp GGGGSCBSCCHHHHHHHHTSCTTTCSEEEEEBTTSCEEEESSCEEEEECSSSC-------------------EEEECGGG
T ss_pred cchhchhcchHHHHHHHHHHHhcCCcEEEEECCCCeEEEcCceeEEEEeCCCE-------------------EECCCCcc
Confidence 233455443 3333 57789999998777555999999999999998 77 99999999
Q ss_pred CCCccHHHHHHHHHHHhCCCcEEEEecCHHHHhhcceeEEecCccceEEEE
Q 020660 261 GVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSSFDLI 311 (323)
Q Consensus 261 giL~GitR~~vl~la~~~gi~v~e~~~~~~dL~~adEvFltns~~gv~pV~ 311 (323)
|+|+||||+.||+++ +|+|+.++++||..|||+|+|||++||+||.
T Consensus 174 ~~L~GitR~~ll~~~-----~v~e~~i~~~~L~~adevf~~ns~~gi~pV~ 219 (221)
T 3qqm_A 174 GLLPGVLRAELLDEG-----RAEEAIYSYDDLKSAKALFVGNSLRGLIPAK 219 (221)
T ss_dssp TCCCCHHHHHHHHTT-----SEEEECCCHHHHTTCSEEEEEETTTEEEEEE
T ss_pred CcchHHHHHHHHhhC-----cEEEEeCCHHHHHhCCEEEEEecceeEEEEE
Confidence 999999999999964 8999999999999999999999999999997
No 18
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for structural genomics, protein structure initiative, PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus}
Probab=100.00 E-value=6.7e-37 Score=271.51 Aligned_cols=192 Identities=11% Similarity=0.007 Sum_probs=143.4
Q ss_pred cCcCeeEEEEEEEcCCccccCHHHHHHHHHHHH-HHhcCcCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhh
Q 020660 27 QERRGAYTTTRTHNNGSCLLFWERHLRRLASSA-RILYNSSPNLLFKSPTPSGLEPIRTPSSSSSLSMWESMIKSLVNDS 105 (323)
Q Consensus 27 ~~G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa-~~l~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lv~~~ 105 (323)
++|+|+|||||+++| ++++|++|++||.+|| +.|+++.| .+++.++|.+.+. +++
T Consensus 2 ~~g~~vfEt~r~~~g--~~~~l~~Hl~RL~~Sa~~~l~~~~~-------------------~~~~~~~~~~~i~-~~~-- 57 (194)
T 3ceb_A 2 MWQFPLFETILIEQG--QAKNISYHQQRYEKSLLKFYPKMKL-------------------QPFDLAKIIAKHT-ALF-- 57 (194)
T ss_dssp CTTCCEEEEEEEETT--EECSHHHHHHHHHHHHHHHSTTCCC-------------------CCCCHHHHHHTCG-GGG--
T ss_pred CCCCeEEEEEEEECC--EecCHHHHHHHHHHHHHHHhCCCCC-------------------CCCCHHHHHHHHH-HHh--
Confidence 358999999999998 8999999999999999 99999521 1367888877666 554
Q ss_pred hhccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEEecCCCccccccCCCceEEEecccccccc
Q 020660 106 MNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLALVGRGRDVAE 185 (323)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~r~~~~ 185 (323)
+++..+++||++++++.. .+...|+++... .+.. ........+.
T Consensus 58 -----------~~~~~~~~iR~~~~~g~~-------------------~~~~~p~~~~~~----~~~~--~~~~~~~~~~ 101 (194)
T 3ceb_A 58 -----------THREGLIRCRIDYNHHDY-------------------VLQCFPYQQKVY----RTFK--PVFCDHIDYS 101 (194)
T ss_dssp -----------SCSSSEEEEEEEECSSCE-------------------EEEEEEECCCCC----CCEE--EEECSSCCCS
T ss_pred -----------hCCCCCEEEEEEEeCCcc-------------------EEEEecCCCCcE----EEEE--EecCCCcchh
Confidence 345578999999987631 112234433211 1111 1111112234
Q ss_pred cccccccccchHHHhhCCCCCCeEEEecCCCeEEecCcceEEEEEcCCCCchhhhhhhhcCCCCccEEEecCCCCCCCcc
Q 020660 186 AKYSDWVRLRKPLEKLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPG 265 (323)
Q Consensus 186 ~k~~~~~~~~~~l~~a~~~g~de~lL~~~gg~v~Eg~~sNlF~v~~~~~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~G 265 (323)
.|..++. .....+|+++|+||+|+. .+|+|+||+++|||++++++ |+||| +++|+|
T Consensus 102 ~Kt~n~~--~~~~~~A~~~g~de~l~l-~~G~v~E~s~sNif~~~~g~-------------------l~TP~--~~~L~G 157 (194)
T 3ceb_A 102 LKFSDRT--LLNNLLKQKEECDEIMII-RQGKVTDCSIGNLIFRQNNQ-------------------WITPD--KPLLEG 157 (194)
T ss_dssp SCBSCCH--HHHHHHGGGTTSSEEEEE-ETTEECCCSSSEEEEEETTE-------------------EEEES--SCSSCC
T ss_pred hcccCHH--HHHHHHHhhCCCCEEEEE-eCCEEEEeccEEEEEEECCE-------------------EECCC--CCCcCh
Confidence 4544432 112235788999999766 44599999999999999998 99999 789999
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCHHHHhhcceeEEecCccce
Q 020660 266 VIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSS 307 (323)
Q Consensus 266 itR~~vl~la~~~gi~v~e~~~~~~dL~~adEvFltns~~gv 307 (323)
|||+.||+ +++|+|+.++++||..|||+|+|||++|+
T Consensus 158 itR~~ll~-----~~~v~e~~i~~~eL~~adevfl~ns~~gi 194 (194)
T 3ceb_A 158 TQRAKLLE-----QKKIIAREIFFEDLAQYEEIRLINAMNGL 194 (194)
T ss_dssp HHHHHHHH-----TTSSEEECCBGGGGGGCSCEEEEBTTBCC
T ss_pred HHHHHHHc-----CCCEEEecCCHHHHhhccEEEEEecccCC
Confidence 99999998 68999999999999999999999999986
No 19
>3mcb_B Transcription factor BTF3; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens}
Probab=48.89 E-value=16 Score=25.40 Aligned_cols=28 Identities=18% Similarity=0.485 Sum_probs=19.8
Q ss_pred CCCCeE-EEecCCCeEEe--------cCcceEEEEEcC
Q 020660 204 PSVTEL-LLSNDGDQLLE--------GSITNFFVVCRK 232 (323)
Q Consensus 204 ~g~de~-lL~~~gg~v~E--------g~~sNlF~v~~~ 232 (323)
.|.+|+ ++-+|| .|.. ...+|-|+|.+.
T Consensus 5 ~gIeEVnmfk~dg-~vihF~nPkVqaS~~aNTfvv~G~ 41 (58)
T 3mcb_B 5 SGIEEVNMFTNQG-TVIHFNNPKVQASLAANTFTITGH 41 (58)
T ss_dssp CCCCEEEEEETTS-EEEEEESCEEEEETTTTEEEEESC
T ss_pred CCeeEEEEEecCC-EEEEecCcceEEeeccceEEEecC
Confidence 477888 555555 6655 456999999875
No 20
>3lkx_A Transcription factor BTF3; beta-barrel, chaperone; 2.50A {Homo sapiens}
Probab=47.49 E-value=16 Score=26.08 Aligned_cols=28 Identities=18% Similarity=0.419 Sum_probs=18.8
Q ss_pred CCCCeE-EEecCCCeEEec--------CcceEEEEEcC
Q 020660 204 PSVTEL-LLSNDGDQLLEG--------SITNFFVVCRK 232 (323)
Q Consensus 204 ~g~de~-lL~~~gg~v~Eg--------~~sNlF~v~~~ 232 (323)
.|.+|+ ++-+|| .|... ..+|-|+|.+.
T Consensus 5 ~gIeEVnmfk~dg-~vihF~nPkVqaS~~aNT~vv~G~ 41 (66)
T 3lkx_A 5 SGIEEVNMFTNQG-TVIHFNNPKVQASLAANTFTITGH 41 (66)
T ss_dssp CCEEEEEEEETTS-EEEEEESCEEEEECC-CEEEEESC
T ss_pred CCeeEEEEEecCC-EEEEecCcceEEeeccCeeEecCC
Confidence 467788 555555 66654 67999999875
No 21
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=42.80 E-value=26 Score=27.48 Aligned_cols=45 Identities=7% Similarity=-0.035 Sum_probs=34.7
Q ss_pred CCCCccHHHHHHHH-HHHhCCCcEEEE---------ecCHHHHhhcceeEEecCc
Q 020660 260 DGVLPGVIRQLVIE-VCRSKGIPIREL---------ASSWSQHELWKEAFITSKY 304 (323)
Q Consensus 260 ~giL~GitR~~vl~-la~~~gi~v~e~---------~~~~~dL~~adEvFltns~ 304 (323)
.|+-...|-.-.|+ .|+++|+.+..+ .++.+|+..||-|.+.+..
T Consensus 16 tGiAHTyMAAeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d~ 70 (111)
T 2kyr_A 16 MGLAHTFMAAQALEEAAVEAGYEVKIETQGADGIQNRLTAQDIAEATIIIHSVAV 70 (111)
T ss_dssp SCHHHHHHHHHHHHHHHHHTSSEEEEEEEETTEEESCCCHHHHHHCSEEEEEESS
T ss_pred CcHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcCCCCCHHHHHhCCEEEEEeCC
Confidence 55666666555554 688899988763 7999999999999998875
No 22
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=33.36 E-value=1.1e+02 Score=23.53 Aligned_cols=59 Identities=14% Similarity=0.144 Sum_probs=41.4
Q ss_pred EEecCCCCCCCccHHHHHHHH-HHHhCCCcEEEE---------ecCHHHHhhcceeEEecCccceEEEEEechhh
Q 020660 253 VQTAPISDGVLPGVIRQLVIE-VCRSKGIPIREL---------ASSWSQHELWKEAFITSKYSSSFDLIAQKRFA 317 (323)
Q Consensus 253 l~TPpl~~giL~GitR~~vl~-la~~~gi~v~e~---------~~~~~dL~~adEvFltns~~gv~pV~~~~~~~ 317 (323)
.+|.. ..|+-...|-.-.|+ .|+++|+.+..+ .++.+|+..||-|.+.+.. +|. ..||.
T Consensus 7 aVTaC-ptGiAhTymAaeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d~----~v~-~~RF~ 75 (106)
T 2r4q_A 7 AVTAC-PTGIAHTFMAADALKEKAKELGVEIKVETNGSSGIKHKLTAQEIEDAPAIIVAADK----QVE-MERFK 75 (106)
T ss_dssp EEEEC-SCC--CHHHHHHHHHHHHHHHTCCEEEEEEETTEEESCCCHHHHHHCSCEEEEESS----CCC-CGGGT
T ss_pred EEecC-CCcHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCccCCCCHHHHHhCCEEEEEeCC----ccC-HhHcC
Confidence 45543 367777777666666 678899887663 6999999999999998875 343 56664
No 23
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=32.04 E-value=1.1e+02 Score=23.70 Aligned_cols=59 Identities=12% Similarity=0.136 Sum_probs=42.4
Q ss_pred EEecCCCCCCCccHHHHHHHH-HHHhCCCcEEEE---------ecCHHHHhhcceeEEecCccceEEEEEechhh
Q 020660 253 VQTAPISDGVLPGVIRQLVIE-VCRSKGIPIREL---------ASSWSQHELWKEAFITSKYSSSFDLIAQKRFA 317 (323)
Q Consensus 253 l~TPpl~~giL~GitR~~vl~-la~~~gi~v~e~---------~~~~~dL~~adEvFltns~~gv~pV~~~~~~~ 317 (323)
.+|.. ..|+-...|-.-.|+ .|+++|+.+..+ .++.+|+..||-|.+.+.. +|. ..||.
T Consensus 7 aVTaC-ptGiAhTymAaeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d~----~v~-~~RF~ 75 (106)
T 2r48_A 7 AITSC-PNGIAHTYMAAENLQKAADRLGVSIKVETQGGIGVENKLTEEEIREADAIIIAADR----SVN-KDRFI 75 (106)
T ss_dssp EEEEC-SSCSHHHHHHHHHHHHHHHHHTCEEEEEEEETTEEESCCCHHHHHHCSEEEEEESS----CCC-CGGGT
T ss_pred EEecC-CCcHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCccCCCCHHHHHhCCEEEEEeCC----ccC-HhHcC
Confidence 45543 366777777666665 678899887663 6999999999999998875 343 56664
No 24
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=27.18 E-value=67 Score=24.83 Aligned_cols=51 Identities=14% Similarity=0.047 Sum_probs=36.4
Q ss_pred EEecCCCCCCCccHH-HHHHHHHHHhCCCcEEEE---------ecCHHHHhhcceeEEecCc
Q 020660 253 VQTAPISDGVLPGVI-RQLVIEVCRSKGIPIREL---------ASSWSQHELWKEAFITSKY 304 (323)
Q Consensus 253 l~TPpl~~giL~Git-R~~vl~la~~~gi~v~e~---------~~~~~dL~~adEvFltns~ 304 (323)
.+|.- ..|+=...+ -+.+-+.|+++|+.+..+ .++.+|+..||-+.+....
T Consensus 7 aVtaC-ptGiAhTymAAeaLekaA~~~G~~ikVEtqgs~g~~n~Lt~~~I~~AD~VIia~d~ 67 (106)
T 2m1z_A 7 AVTAC-ATGVAHTYMAAQALKKGAKKMGNLIKVETQGATGIENELTEKDVNIGEVVIFAVDT 67 (106)
T ss_dssp EEEEC-SSCHHHHHHHHHHHHHHHHHHTCEEEEEEEETTEESSCCCHHHHHHCSEEEEEESS
T ss_pred EEEEC-CCcHHHHHHHHHHHHHHHHHCCCEEEEEEecCccccCCCCHHHHhhCCEEEEeccc
Confidence 45542 255666666 445556788899887654 5778999999999998764
No 25
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=23.84 E-value=90 Score=24.87 Aligned_cols=46 Identities=9% Similarity=0.174 Sum_probs=35.0
Q ss_pred ccHHHHHHHHHHHhCCCcEEEEec---CHHHHhhcceeEEecCcc--ceEEE
Q 020660 264 PGVIRQLVIEVCRSKGIPIRELAS---SWSQHELWKEAFITSKYS--SSFDL 310 (323)
Q Consensus 264 ~GitR~~vl~la~~~gi~v~e~~~---~~~dL~~adEvFltns~~--gv~pV 310 (323)
-|.|++..-.+++.+|. ++..++ ...++..+|-+++..++. |..|-
T Consensus 12 tGnT~~~A~~ia~~lg~-~~~~~~~~~~~~~l~~~d~ii~g~pt~~~g~~p~ 62 (164)
T 2bmv_A 12 SGNAEAIAEKISKAIGN-AEVVDVAKASKEQFNSFTKVILVAPTAGAGDLQT 62 (164)
T ss_dssp SSHHHHHHHHHHHHHCS-EEEEEGGGCCHHHHTTCSEEEEEEEEETTTEECH
T ss_pred CchHHHHHHHHHHHcCC-cEEEecccCCHhHHhhCCEEEEEECCcCCCcCcH
Confidence 49999999889998887 666555 366788889888877664 56664
No 26
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=20.99 E-value=1.1e+02 Score=24.49 Aligned_cols=35 Identities=17% Similarity=0.273 Sum_probs=30.7
Q ss_pred CCCCccHHHHHHHHHHHhCCCcEEEEecCHHHHhh
Q 020660 260 DGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHEL 294 (323)
Q Consensus 260 ~giL~GitR~~vl~la~~~gi~v~e~~~~~~dL~~ 294 (323)
+|-+.|+.-+.+-++++++|++++....++.++..
T Consensus 21 ~g~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~ 55 (227)
T 3tql_A 21 SGQVEGFGADIVKAVCKQMQAVCTISNQPWDSLIP 55 (227)
T ss_dssp -CCEESHHHHHHHHHHHHTTCEEEEEECCHHHHHH
T ss_pred CCCcccchHHHHHHHHHHhCCeEEEEeCCHHHHHH
Confidence 67889999999999999999999999999887753
No 27
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=20.41 E-value=22 Score=23.82 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=19.8
Q ss_pred CCCCccHHHHHHHHHHHhCCCcEE
Q 020660 260 DGVLPGVIRQLVIEVCRSKGIPIR 283 (323)
Q Consensus 260 ~giL~GitR~~vl~la~~~gi~v~ 283 (323)
+.+|+|..|+.|++.++.-++.|-
T Consensus 17 q~VLqgksR~vIirELqrTnLdVN 40 (53)
T 2qho_B 17 QVVLQGKSRSVIIRELQRTNLDVN 40 (53)
T ss_dssp HHHSTTCCHHHHHHHHHHTTTCHH
T ss_pred HHHhcCCcHHHHHHHHHHhCccHH
Confidence 358999999999998888777653
Done!