RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 020660
(323 letters)
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like
PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A
{Corynebacterium glutamicum}
Length = 315
Score = 69.3 bits (170), Expect = 1e-13
Identities = 41/334 (12%), Positives = 81/334 (24%), Gaps = 103/334 (30%)
Query: 4 TRIVFSNGVVSQASD--TPSVSTFLQERRGA------YTTTRTHNNGSCLLFWERHLRRL 55
IV G + + P V + T + RH R
Sbjct: 16 ILIVEPYGGSIRQQNPNLPMVFWD---DAALTRGDGIFETLLIRDG--HACNVRRHGERF 70
Query: 56 ASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALK 115
+SA +L + P WE + +
Sbjct: 71 KASAALLG------------------LPEPILED----WEKATQMGIES---------WY 99
Query: 116 ERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLA 175
+ E + T +S G + G +++ G +
Sbjct: 100 SHPNAGEASCTWTLSR------GRSSTGLA----SGWLTITPVSSDKLAQREHGVSVMTS 149
Query: 176 LVGRGRDVAEAKYSDWVRL------RKPLEKLRP--------PSV-----------TELL 210
G D R R P L ++ +++
Sbjct: 150 SRGYSIDTGLPGIGKATRGELSKVERTPAPWLTVGAKTLAYAANMAALRYAKSNGFDDVI 209
Query: 211 LSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQL 270
++ ++LEG+ + K + +++T +LPG +
Sbjct: 210 FTDGD-RVLEGATSTVVSF--KGD-----------------KIRTPSPGGDILPGTTQAA 249
Query: 271 VIEVCRSKGIPIRELASSWSQHELWK--EAFITS 302
+ KG +E S +L+ ++ S
Sbjct: 250 LFAHATEKGWRCKE--KDLSIDDLFGADSVWLVS 281
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET:
PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB:
1et0_A* 1i2l_A*
Length = 269
Score = 65.2 bits (160), Expect = 2e-12
Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 24/96 (25%)
Query: 209 LLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIR 268
L+L ++G + E N F K N V T + + G++R
Sbjct: 163 LVLDSEG-WVTECCAANLFWR--KGN-----------------VVYTPRLDQAGVNGIMR 202
Query: 269 QLVIEVCRSKGIPIRELASSWSQHELWK--EAFITS 302
Q I + + E S E + E I +
Sbjct: 203 QFCIRLLAQSSYQLVE--VQASLEESLQADEMVICN 236
Score = 40.2 bits (95), Expect = 5e-04
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 31 GAYTTTRTHNNGSCLLFWERHLRRLASSARIL 62
G +TT R + + H++RL + + L
Sbjct: 24 GCFTTARVIDG--KVSLLSAHIQRLQDACQRL 53
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for
structural genomics, JCSG, protein structure INI PSI-2,
pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella
pneumophila}
Length = 272
Score = 64.8 bits (159), Expect = 3e-12
Identities = 18/96 (18%), Positives = 40/96 (41%), Gaps = 24/96 (25%)
Query: 209 LLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIR 268
L + + + E + N F++ ++N + T + DG+LPG+ R
Sbjct: 164 LFFNTEN-HVTETTCANLFLI--ENN-----------------ILYTPRVEDGILPGITR 203
Query: 269 QLVIEVCRSKGIPIRELASSWSQHELWK--EAFITS 302
+I C+ + ++E S ++ + F+T+
Sbjct: 204 ARLISHCQQHKMSVQE--ISLTKKRIEDADAVFLTN 237
Score = 32.1 bits (74), Expect = 0.17
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 31 GAYTTTRTHNNGSCLLFWERHLRRLASSARIL 62
G + T R +++ F H RL +SAR L
Sbjct: 28 GLFETIRVNSS--KPSFAYMHWERLGNSARQL 57
>2xpf_A 4-amino-4-deoxychorismate lyase; para-aminobenzoic acid, folate
biosynthesis; HET: PLP PG4; 1.75A {Pseudomonas
aeruginosa} PDB: 2y4r_A* 2xpf_B*
Length = 292
Score = 62.2 bits (152), Expect = 2e-11
Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 24/96 (25%)
Query: 209 LLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIR 268
L+L +++EG +N +V D + + + GV+R
Sbjct: 184 LMLDVHE-RVVEGVFSNLLLV--LDG-----------------TLVAPDLRRCGVAGVMR 223
Query: 269 QLVIEVCRSKGIPIRELASSWSQHELWK--EAFITS 302
++E G+P+ S EL E F+ +
Sbjct: 224 AELLERAEGIGVPLAI--RDVSMAELATADEVFLCN 257
Score = 37.5 bits (88), Expect = 0.004
Identities = 10/32 (31%), Positives = 11/32 (34%), Gaps = 2/32 (6%)
Query: 31 GAYTTTRTHNNGSCLLFWERHLRRLASSARIL 62
G + T ERHL RL R L
Sbjct: 46 GLFETLAVRAG--TPRLLERHLARLEEGCRRL 75
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase;
HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB:
4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A*
2dab_A*
Length = 277
Score = 61.3 bits (150), Expect = 4e-11
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 24/97 (24%)
Query: 208 ELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVI 267
E +L + + EGS +N F + KD + T P ++ +L G+
Sbjct: 166 EAILHRNN-TVTEGSSSNVFGI--KDG-----------------ILYTHPANNMILKGIT 205
Query: 268 RQLVIEVCRSKGIPIRELASSWSQHELW--KEAFITS 302
R +VI +P++E ++ HE E F+TS
Sbjct: 206 RDVVIACANEINMPVKE--IPFTTHEALKMDELFVTS 240
Score = 27.1 bits (61), Expect = 8.2
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 31 GAYTTTRTHNNGSCLLFWERHLRRLASSARIL 62
G Y + +N + H+ RL +SA +
Sbjct: 29 GVYEVVKVYNG--EMFTVNEHIDRLYASAEKI 58
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831,
putative branched-chain amino acid aminotransferase;
HET: PLP CIT; 2.15A {Thermotoga maritima MSB8}
Length = 285
Score = 55.6 bits (135), Expect = 4e-09
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 24/96 (25%)
Query: 209 LLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIR 268
+LL +G Q+ EGS +N F+V K+ ++ T + G+L G+ R
Sbjct: 166 ILLGLNG-QVCEGSFSNVFLV--KEG-----------------KLITPSLDSGILDGITR 205
Query: 269 QLVIEVCRSKGIPIRELASSWSQHELWK--EAFITS 302
+ VI++ +S IP+ E EL++ E F+T
Sbjct: 206 ENVIKLAKSLEIPVEE--RVVWVWELFEADEMFLTH 239
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU;
1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A*
1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A*
Length = 309
Score = 52.6 bits (127), Expect = 5e-08
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 24/95 (25%)
Query: 209 LLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIR 268
+ L +G + EG+ N F V KD + T P + LPG+ R
Sbjct: 184 IALDVNG-YISEGAGENLFEV--KDG-----------------VLFTPPFTSSALPGITR 223
Query: 269 QLVIEVCRSKGIPIRELASSWSQHELWK--EAFIT 301
+I++ + GI +RE S+ L+ E F++
Sbjct: 224 DAIIKLAKELGIEVRE--QVLSRESLYLADEVFMS 256
Score = 27.6 bits (62), Expect = 5.8
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 32 AYTTTRTHNNGSCLLFWERHLRRLASSARIL 62
Y + + G + H++RL SA+I
Sbjct: 42 CYDS----HKGPVVFRHREHMQRLHDSAKIY 68
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor,
pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A
{Thermus thermophilus}
Length = 246
Score = 51.0 bits (123), Expect = 1e-07
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 25/93 (26%)
Query: 209 LLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIR 268
LLL G +++GS T+ + ++ + +G L G+ R
Sbjct: 149 LLLDAFG-HVVDGSRTSPLLF--REG-----------------TLYLL---EGGLEGITR 185
Query: 269 QLVIEVCRSKGIPIRELASSWSQHELWKEAFIT 301
+ V E R G+ + L +
Sbjct: 186 EKVAEAARGLGLRVERGLFRP--EGLRGHLLLA 216
Score = 32.9 bits (76), Expect = 0.10
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 31 GAYTTTRTHNNGSCLLFWERHLRRLASSARIL 62
+TT R G L+ E HL RL A L
Sbjct: 23 SVFTTLRAE--GGRPLWLEEHLARLRRHALAL 52
>3qqm_A MLR3007 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
transferase; HET: LLP; 2.30A {Mesorhizobium loti}
Length = 221
Score = 50.0 bits (120), Expect = 2e-07
Identities = 46/295 (15%), Positives = 81/295 (27%), Gaps = 99/295 (33%)
Query: 20 PSVSTF---LQERRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTP 76
P+ S T R G+ L ++RHL R LY S+ L F
Sbjct: 3 PAQSPLRDGDTADFELIETMRWQP-GTSFLRFDRHLAR-------LYGSAAELGFACD-- 52
Query: 77 SGLEPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKL 136
++ ++ + + ++ +
Sbjct: 53 --------------PQRIAEVLSDALDGARTAM--------------RTRLALARNG--- 81
Query: 137 SGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLALVGRGRDVAEA----K---YS 189
D + Y P L L D K
Sbjct: 82 ---------------DATASAQPYEPLA---ADKVWILRLARTRLDSQNTLLRHKTSRRQ 123
Query: 190 DWVRLRKPLEKLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSH 249
+ R + E+LL+N+ ++ EG+ITN F D
Sbjct: 124 LYTHARS---EYLVTQADEVLLANERGEICEGTITNVFAD-FGDG--------------- 164
Query: 250 SFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWK--EAFITS 302
+ T + G+LPGV+R +++ R E + +S +L F+ +
Sbjct: 165 --VLATPRLDCGLLPGVLRAELLDEGR-----AEE--AIYSYDDLKSAKALFVGN 210
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 5e-07
Identities = 40/253 (15%), Positives = 77/253 (30%), Gaps = 101/253 (39%)
Query: 5 RIVFSNGVVSQASDTPSVS---TFLQERRGAYTTTRTHNNG--SCLL--------FWERH 51
++F GV + P+ S + L++ + +N G S +L + +
Sbjct: 301 TVLFFIGVRCYEA-YPNTSLPPSILED-------SLENNEGVPSPMLSISNLTQEQVQDY 352
Query: 52 LRR----LASSARI---LYNSSPNL---------------LFKSPTPSGLEPIRTPSSS- 88
+ + L + ++ L N + NL L K+ PSGL+ R P S
Sbjct: 353 VNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER 412
Query: 89 ----------------SSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGD 132
S L + + D + + + +++ + V
Sbjct: 413 KLKFSNRFLPVASPFHSHL-L-VPASDLINKDLVKNNVSF------NAKDIQIPV----- 459
Query: 133 YGKLSGIENM--GSDDFLG-----VFDVSVHFSGYVPF------VFG------------- 166
Y G ++ S + + V + F FG
Sbjct: 460 YDTFDG-SDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHR 518
Query: 167 -VEGTGARLALVG 178
+GTG R+ + G
Sbjct: 519 NKDGTGVRVIVAG 531
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for
structural genomics, protein structure initiative,
PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus}
Length = 194
Score = 48.2 bits (115), Expect = 6e-07
Identities = 35/258 (13%), Positives = 58/258 (22%), Gaps = 89/258 (34%)
Query: 34 TTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSSSLSM 93
T H +R S Y F
Sbjct: 9 ETILIEQGQ--AKNISYHQQRYEKSLLKFYPKMKLQPFD--------------------- 45
Query: 94 WESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDV 153
+I AL R+G + + + D
Sbjct: 46 LAKIIAKH----------TALFTHREGL-IRCRIDYNHH-------------------DY 75
Query: 154 SVHFSGYVPFVFGVEGTGARLALVGRGRDVAEAKYSDWVRLRKPLEKL--RPPSVTELLL 211
+ Y V+ V K+SD R L L + E+++
Sbjct: 76 VLQCFPYQQKVY------RTFKPVFCDHIDYSLKFSD----RTLLNNLLKQKEECDEIMI 125
Query: 212 SNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLV 271
G ++ + SI N + T P +L G R +
Sbjct: 126 IRQG-KVTDCSIGNLIFRQ--------NNQWIT------------P-DKPLLEGTQRAKL 163
Query: 272 IEV--CRSKGIPIRELAS 287
+E ++ I +LA
Sbjct: 164 LEQKKIIAREIFFEDLAQ 181
>3u0g_A Putative branched-chain amino acid aminotransfera; structural
genomics, seattle structural genomics center for
infectious disease; 1.90A {Burkholderia pseudomallei}
Length = 328
Score = 48.8 bits (117), Expect = 8e-07
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 25/95 (26%)
Query: 209 LLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIR 268
LLL DG + EGS NFF+V ++ T P L G+ R
Sbjct: 206 LLLDVDG-YVSEGSGENFFLV--NRG-----------------KLYT-PDLASCLDGITR 244
Query: 269 QLVIEVCRSKGIPIRELASSWSQHELWK--EAFIT 301
VI + + GI + E ++ E++ EAF T
Sbjct: 245 DTVITLAKEAGIEVIE--KRITRDEVYTADEAFFT 277
Score = 27.2 bits (61), Expect = 7.0
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 32 AYTTTRTHNNGSCLLFWERHLRRLASSARIL 62
AY +T + G+ + + H +RL +SA+I
Sbjct: 64 AY---KTADGGTAIFRLKEHTKRLLNSAKIF 91
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent
enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB:
1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A*
Length = 308
Score = 48.0 bits (115), Expect = 1e-06
Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 25/95 (26%)
Query: 209 LLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIR 268
LLL +G + EGS N F V +D + L G+ R
Sbjct: 183 LLLDEEG-YVAEGSGENLFFV--RDG-----------------VIYA-LEHSVNLEGITR 221
Query: 269 QLVIEVCRSKGIPIRELASSWSQHELWK--EAFIT 301
VI + + G ++ ++ +L+ E F+T
Sbjct: 222 DSVIRIAKDLGYEVQV--VRATRDQLYMADEVFMT 254
Score = 27.2 bits (61), Expect = 7.0
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 32 AYTTTRTHNNGSCLLFWERHLRRLASSARIL 62
AY T G + + H++R +SA++L
Sbjct: 41 AYET----AKGPAIFRLKEHVKRFYNSAKVL 67
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme;
HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A*
2abj_A*
Length = 386
Score = 43.4 bits (103), Expect = 5e-05
Identities = 15/83 (18%), Positives = 34/83 (40%), Gaps = 23/83 (27%)
Query: 225 NFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKG----- 279
N F+ ++ E E + T P+ +LPGV R+ ++++ G
Sbjct: 262 NLFLYWINEDGEEE--------------LATPPLDGIILPGVTRRCILDLAHQWGEFKVS 307
Query: 280 ---IPIRELASSWSQHELWKEAF 299
+ + +L ++ + + +E F
Sbjct: 308 ERYLTMDDLTTALEGNRV-REMF 329
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A
{Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A*
1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A*
2hgx_A* 2hdk_A*
Length = 365
Score = 43.4 bits (103), Expect = 6e-05
Identities = 20/102 (19%), Positives = 44/102 (43%), Gaps = 33/102 (32%)
Query: 216 DQLL-----EGSIT-----NFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPG 265
+Q+L + +T N FV ++ E + T P++ +LPG
Sbjct: 223 EQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLE--------------LVTPPLNGVILPG 268
Query: 266 VIRQLVIEVCRSKG--------IPIRELASSWSQHELWKEAF 299
V+RQ ++++ ++ G I +++L + + + +E F
Sbjct: 269 VVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRV-REVF 309
>3dth_A Branched-chain amino acid aminotransferase; open twisted
alpha/beta; HET: PLP OBZ; 1.85A {Mycobacterium
smegmatis} PDB: 3dtf_A* 3dtg_A* 3jz6_A* 3ht5_A*
Length = 372
Score = 41.1 bits (97), Expect = 3e-04
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 8/61 (13%)
Query: 246 NNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKG-------IPIRELASSWSQHELWKEA 298
+ S + T +S +LPG+ R ++++ G I + E E+ E
Sbjct: 255 GSGGSARLVTPELSGSLLPGITRDSLLQLATDAGFAVEERKIDVDEWQKKAGAGEI-TEV 313
Query: 299 F 299
F
Sbjct: 314 F 314
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.6 bits (86), Expect = 0.001
Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
Query: 49 ERH-LRRLASSARILY--NSSPNLLFKS 73
E+ L++L +S + LY +S+P L K+
Sbjct: 18 EKQALKKLQASLK-LYADDSAPALAIKA 44
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 1.3
Identities = 21/162 (12%), Positives = 47/162 (29%), Gaps = 38/162 (23%)
Query: 145 DDFLGVFDVSVHFSGYVPFVFGVEGTGARL-ALVGRGRDVAEAKYSDWVRLRKPLEKLRP 203
D F+ FD + + + ++ V+ W L K E ++
Sbjct: 27 DAFVDNFDCK-DVQDMPKSIL----SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ- 80
Query: 204 PSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQT----CNNSHSF-------- 251
E +L + L+ R S +++ N++ F
Sbjct: 81 -KFVEEVLRINYKFLMS----PIKTEQR-QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134
Query: 252 ----EVQTAPISDGVLPGVIRQ---------LVIEVCRSKGI 280
+++ A + V+ + ++VC S +
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
>2l17_A Synarsc, arsenate reductase; alpha/beta sandwich, oxidoreductase;
NMR {Synechocystis} PDB: 2l18_A 2l19_A
Length = 134
Score = 26.0 bits (58), Expect = 9.3
Identities = 7/44 (15%), Positives = 11/44 (25%), Gaps = 5/44 (11%)
Query: 251 FEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELAS-SWSQHE 293
V + G+ + I + GI I S
Sbjct: 33 IAVTSC----GLESSRVHPTAIAMMEEVGIDISGQTSDPIENFN 72
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.385
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,921,000
Number of extensions: 296342
Number of successful extensions: 596
Number of sequences better than 10.0: 1
Number of HSP's gapped: 589
Number of HSP's successfully gapped: 32
Length of query: 323
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 229
Effective length of database: 4,077,219
Effective search space: 933683151
Effective search space used: 933683151
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.7 bits)