BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020661
(323 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CWB|A Chain A, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|N Chain N, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|A Chain A, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|N Chain N, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|A Chain A, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|N Chain N, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|A Chain A, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|N Chain N, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|A Chain A, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|N Chain N, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|A Chain A, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|N Chain N, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|A Chain A, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|N Chain N, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|A Chain A, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|N Chain N, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|A Chain A, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|N Chain N, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|A Chain A, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|N Chain N, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|A Chain A, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|N Chain N, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|A Chain A, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|N Chain N, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|A Chain A, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|N Chain N, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 446
Score = 244 bits (623), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 124/306 (40%), Positives = 182/306 (59%), Gaps = 3/306 (0%)
Query: 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNST 60
+ FKGT+KR E+E+E+MG H N YTSREQT +Y K L KD+ +++LAD++QN
Sbjct: 62 LAFKGTKKRPCAAFEKEVESMGAHFNGYTSREQTAFYIKALSKDMPKVVELLADVVQNCA 121
Query: 61 FDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEH 120
++++I +ER VIL+ V FD+LHATAFQ T L RT+ G +NIK +T+
Sbjct: 122 LEESQIEKERGVILQELKEMDNDMTNVTFDYLHATAFQGTALARTVEGTTENIKHLTRAD 181
Query: 121 LQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSADPTTASQLVANEPAI-FTGS 179
L +YI TH+ APRMV+AA+G F+ +S T V P FTGS
Sbjct: 182 LASYIDTHFKAPRMVLAAAGGISHKELVDAARQHFSGVSF--TYKEDAVPILPRCRFTGS 239
Query: 180 EVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVG 239
E+R DD +P+A A+A G W DPD++ L V A++G +++ GGKH+ S LA
Sbjct: 240 EIRARDDALPVAHVALAVEGPGWADPDNVVLHVANAIIGRYDRTFGGGKHLSSRLAALAV 299
Query: 240 INEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARN 299
+++ S FNT+Y DTGLFG + VA P +DD+ + E +L +E++V RA+N
Sbjct: 300 EHKLCHSFQTFNTSYSDTGLFGFHFVADPLSIDDMMFCAQGEWMRLCTSTTESEVKRAKN 359
Query: 300 QVAASL 305
+ +++
Sbjct: 360 HLRSAM 365
>pdb|1SQB|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|1SQP|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
Length = 480
Score = 235 bits (600), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 119/322 (36%), Positives = 186/322 (57%), Gaps = 14/322 (4%)
Query: 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNST 60
+ FKGT+ R LE+E+E+MG HLNAY++RE T YY K L KD+ A+++LADI+QN +
Sbjct: 96 LAFKGTKNRPGNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCS 155
Query: 61 FDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEH 120
+ ++I +ERDVIL+ V+F++LHATAFQ TPL +++ GP++N++ +++
Sbjct: 156 LEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRAD 215
Query: 121 LQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLS------ADPTTASQLVANEPA 174
L Y+ HY APRMV+AA+G F+ LS A PT + P
Sbjct: 216 LTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLS-------PC 268
Query: 175 IFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSEL 234
FTGS++ +D +PLA A+A G W PD++AL V A++G ++ GG H+ S L
Sbjct: 269 RFTGSQICHREDGLPLAHVAIAVEGPGWAHPDNVALQVANAIIGHYDCTYGGGAHLSSPL 328
Query: 235 AQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADV 294
A N++ +S FN Y DTGL G + V +DD+ + + + +L +E++V
Sbjct: 329 ASIAATNKLCQSFQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEV 388
Query: 295 TRARNQVAASLPTY-PGYLDIC 315
R +N + +L ++ G +C
Sbjct: 389 LRGKNLLRNALVSHLDGTTPVC 410
>pdb|1QCR|A Chain A, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 446
Score = 235 bits (600), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 117/314 (37%), Positives = 183/314 (58%), Gaps = 13/314 (4%)
Query: 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNST 60
+ FKGT+ R LE+E+E+MG HLNAY++RE T YY K L KD+ A+++LADI+QN +
Sbjct: 62 LAFKGTKNRPGNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCS 121
Query: 61 FDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEH 120
+ ++I +ERDVIL+ V+F++LHATAFQ TPL +++ GP++N++ +++
Sbjct: 122 LEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRAD 181
Query: 121 LQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLS------ADPTTASQLVANEPA 174
L Y+ HY APRMV+AA+G F+ LS A PT + P
Sbjct: 182 LTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLS-------PC 234
Query: 175 IFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSEL 234
FTGS++ +D +PLA A+A G W PD++AL V A++G ++ GG H+ S L
Sbjct: 235 RFTGSQICHREDGLPLAHVAIAVEGPGWAHPDNVALQVANAIIGHYDCTYGGGAHLSSPL 294
Query: 235 AQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADV 294
A N++ +S FN Y DTGL G + V +DD+ + + + +L +E++V
Sbjct: 295 ASIAATNKLCQSFQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEV 354
Query: 295 TRARNQVAASLPTY 308
R +N + +L ++
Sbjct: 355 LRGKNLLRNALVSH 368
>pdb|1BGY|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|M Chain M, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|A Chain A, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|A Chain A, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|2A06|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQQ|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|A Chain A, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|A Chain A, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|AA Chain a, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 446
Score = 235 bits (600), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 117/314 (37%), Positives = 183/314 (58%), Gaps = 13/314 (4%)
Query: 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNST 60
+ FKGT+ R LE+E+E+MG HLNAY++RE T YY K L KD+ A+++LADI+QN +
Sbjct: 62 LAFKGTKNRPGNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCS 121
Query: 61 FDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEH 120
+ ++I +ERDVIL+ V+F++LHATAFQ TPL +++ GP++N++ +++
Sbjct: 122 LEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRAD 181
Query: 121 LQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLS------ADPTTASQLVANEPA 174
L Y+ HY APRMV+AA+G F+ LS A PT + P
Sbjct: 182 LTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLS-------PC 234
Query: 175 IFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSEL 234
FTGS++ +D +PLA A+A G W PD++AL V A++G ++ GG H+ S L
Sbjct: 235 RFTGSQICHREDGLPLAHVAIAVEGPGWAHPDNVALQVANAIIGHYDCTYGGGAHLSSPL 294
Query: 235 AQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADV 294
A N++ +S FN Y DTGL G + V +DD+ + + + +L +E++V
Sbjct: 295 ASIAATNKLCQSFQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEV 354
Query: 295 TRARNQVAASLPTY 308
R +N + +L ++
Sbjct: 355 LRGKNLLRNALVSH 368
>pdb|1BCC|A Chain A, Cytochrome Bc1 Complex From Chicken
pdb|3BCC|A Chain A, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|A Chain A, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 446
Score = 235 bits (599), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 119/305 (39%), Positives = 178/305 (58%), Gaps = 13/305 (4%)
Query: 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNST 60
+ FKGT+ R LE+E+E+MG HLNAY+SRE T YY K L KDV A+++LADI+QN +
Sbjct: 62 LAFKGTKNRPQNALEKEVESMGAHLNAYSSREHTAYYIKALSKDVPKAVELLADIVQNCS 121
Query: 61 FDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEH 120
+ ++I +ERDVI+R V+F++LHATAFQ T L +++ GP++NI+ +++
Sbjct: 122 LEDSQIEKERDVIVRELQENDTSMREVVFNYLHATAFQGTGLAQSVEGPSENIRKLSRAD 181
Query: 121 LQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKL------SADPTTASQLVANEPA 174
L Y+ THYTAPRMV+AA+G F + A PT +
Sbjct: 182 LTEYLSTHYTAPRMVLAAAGGVEHQQLLELAQKHFGGVPFTYDDDAVPTLSK-------C 234
Query: 175 IFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSEL 234
FTGS++R +D +PLA A+A G W PD +AL V A++G +++ GG H S L
Sbjct: 235 RFTGSQIRHREDGLPLAHVAIAVEGPGWAHPDLVALQVANAIIGHYDRTYGGGLHSSSPL 294
Query: 235 AQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADV 294
A N++ +S F+ Y +TGLFG Y V +DD+ + + + +L +SE++V
Sbjct: 295 ASIAVTNKLCQSFQTFSICYSETGLFGFYFVCDRMSIDDMMFVLQGQWMRLCTSISESEV 354
Query: 295 TRARN 299
R +N
Sbjct: 355 LRGKN 359
>pdb|1HR7|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR8|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
Length = 443
Score = 215 bits (547), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 120/313 (38%), Positives = 179/313 (57%), Gaps = 11/313 (3%)
Query: 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNST 60
+ FKGT+ R + +E EIEN+G HLNAYTSRE T YYAK L +D+ A+DIL+DIL S
Sbjct: 56 LAFKGTQNRPQQGIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSV 115
Query: 61 FDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEH 120
D + I RERDVI+R V+FDHLH ++ PLGRTILGP +NIK+IT+
Sbjct: 116 LDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITRTD 175
Query: 121 LQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSADPTTASQLVANEP----AIF 176
L++YI +Y RMV+A +GA F + P + S + P +F
Sbjct: 176 LKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHV---PKSESPVPLGSPRGPLPVF 232
Query: 177 TGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQ 236
E I ++ +P A+A G SW+ PD + QA++G+W++ G + S LA
Sbjct: 233 CRGERFIKENTLPTTHIAIALEGVSWSAPDYFVALATQAIVGNWDRAIGTGTNSPSPLAV 292
Query: 237 RVGIN-EIAESMMAFNTNYKDTGLFGVYAVAKPD--CLDDLAYAIMYETTKL-AYRVSEA 292
N +A S M+F+T+Y D+GL+G+Y V + + + I+ E ++ + ++S+A
Sbjct: 293 AASQNGSLANSYMSFSTSYADSGLWGMYIVTDSNEHNVRLIVNEILKEWKRIKSGKISDA 352
Query: 293 DVTRARNQVAASL 305
+V RA+ Q+ A+L
Sbjct: 353 EVNRAKAQLKAAL 365
>pdb|1HR6|B Chain B, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|D Chain D, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|F Chain F, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|H Chain H, Yeast Mitochondrial Processing Peptidase
Length = 443
Score = 215 bits (547), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 120/313 (38%), Positives = 179/313 (57%), Gaps = 11/313 (3%)
Query: 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNST 60
+ FKGT+ R + +E EIEN+G HLNAYTSRE T YYAK L +D+ A+DIL+DIL S
Sbjct: 56 LAFKGTQNRPQQGIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSV 115
Query: 61 FDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEH 120
D + I RERDVI+R V+FDHLH ++ PLGRTILGP +NIK+IT+
Sbjct: 116 LDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITRTD 175
Query: 121 LQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSADPTTASQLVANEP----AIF 176
L++YI +Y RMV+A +GA F + P + S + P +F
Sbjct: 176 LKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHV---PKSESPVPLGSPRGPLPVF 232
Query: 177 TGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQ 236
E I ++ +P A+A G SW+ PD + QA++G+W++ G + S LA
Sbjct: 233 CRGERFIKENTLPTTHIAIALEGVSWSAPDYFVALATQAIVGNWDRAIGTGTNSPSPLAV 292
Query: 237 RVGIN-EIAESMMAFNTNYKDTGLFGVYAVAKPD--CLDDLAYAIMYETTKL-AYRVSEA 292
N +A S M+F+T+Y D+GL+G+Y V + + + I+ E ++ + ++S+A
Sbjct: 293 AASQNGSLANSYMSFSTSYADSGLWGMYIVTDSNEHNVRLIVNEILKEWKRIKSGKISDA 352
Query: 293 DVTRARNQVAASL 305
+V RA+ Q+ A+L
Sbjct: 353 EVNRAKAQLKAAL 365
>pdb|3HDI|A Chain A, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
pdb|3HDI|B Chain B, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
Length = 421
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 152/307 (49%), Gaps = 17/307 (5%)
Query: 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNST 60
M FKGT R+A+++ E +++GG +NA+TS+E T YYAKVLD A+D L+D+ +ST
Sbjct: 51 MFFKGTNTRSAQEIAEFFDSIGGQVNAFTSKEYTCYYAKVLDDHAGQAIDTLSDMFFHST 110
Query: 61 FDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEH 120
F + + +ER V+ ++ D L + + LG ILG + + + +
Sbjct: 111 FQKEELEKERKVVFEEIKMVDDTPDDIVHDLLSSATYGKHSLGYPILGTVETLNSFNEGM 170
Query: 121 LQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSADPTTASQLVANEPAIFTGSE 180
L++Y+ YT +VI+ +G F+++ PTT + +P
Sbjct: 171 LRHYMDRFYTGDYVVISVAGNVHDELIDKIKET-FSQVK--PTTYN-YQGEKPMFLPNRI 226
Query: 181 VRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGI 240
VR + A + + G D D AL+++ N+V G M S L Q +
Sbjct: 227 VR--KKETEQAHLCLGYPGLPIGDKDVYALVLL---------NNVLGGSMSSRLFQDIRE 275
Query: 241 NE-IAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYR-VSEADVTRAR 298
+ S+ +++++++D+G+ +YA D LDDL Y+I T+ LA + ++E ++ +
Sbjct: 276 KRGLCYSVFSYHSSFRDSGMLTIYAGTGHDQLDDLVYSIQETTSALAEKGLTEKELENGK 335
Query: 299 NQVAASL 305
Q+ SL
Sbjct: 336 EQLKGSL 342
>pdb|1EZV|A Chain A, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KYO|A Chain A, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|L Chain L, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
Length = 430
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 127/286 (44%), Gaps = 17/286 (5%)
Query: 22 GGHLNAYTSREQTTYYAKVLDKDVNNALDIL--------ADILQNSTFDQARITRERDVI 73
G L++ SR+ +Y L + +LD L A++L +S F+ + + V+
Sbjct: 63 GLALSSNISRDFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATK----KSVL 118
Query: 74 LRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPR 133
+ + +HLH+TAFQ TPL G ++++ + L+++ + H+
Sbjct: 119 KQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTLESLENLVVADLESFANNHFLNSN 178
Query: 134 MVIAASGAXXXXXXXXXXXXLFTKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQF 193
V+ +G L T ++ V + A F GSEVR+ DD +P A
Sbjct: 179 AVVVGTGNIKHEDLVNSIESKNLSLQ----TGTKPVLKKKAAFLGSEVRLRDDTLPKAWI 234
Query: 194 AVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTN 253
++A G P+ + + GS+N + G +L + ++ ++ F+ +
Sbjct: 235 SLAVEGEPVNSPNYFVAKLAAQIFGSYNAFEPASRLQGIKLLDNIQEYQLCDNFNHFSLS 294
Query: 254 YKDTGLFGVY-AVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRAR 298
YKD+GL+G A +DDL + + + +L V++ +V RA+
Sbjct: 295 YKDSGLWGFSTATRNVTMIDDLIHFTLKQWNRLTISVTDTEVERAK 340
>pdb|1KB9|A Chain A, Yeast Cytochrome Bc1 Complex
pdb|1P84|A Chain A, Hdbt Inhibited Yeast Cytochrome Bc1 Complex
pdb|2IBZ|A Chain A, Yeast Cytochrome Bc1 Complex With Stigmatellin
pdb|3CX5|A Chain A, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CX5|L Chain L, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CXH|A Chain A, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|3CXH|L Chain L, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer
Length = 431
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 127/286 (44%), Gaps = 17/286 (5%)
Query: 22 GGHLNAYTSREQTTYYAKVLDKDVNNALDIL--------ADILQNSTFDQARITRERDVI 73
G L++ SR+ +Y L + +LD L A++L +S F+ + + V+
Sbjct: 64 GLALSSNISRDFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATK----KSVL 119
Query: 74 LRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPR 133
+ + +HLH+TAFQ TPL G ++++ + L+++ + H+
Sbjct: 120 KQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTLESLENLVVADLESFANNHFLNSN 179
Query: 134 MVIAASGAXXXXXXXXXXXXLFTKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQF 193
V+ +G L T ++ V + A F GSEVR+ DD +P A
Sbjct: 180 AVVVGTGNIKHEDLVNSIESKNLSLQ----TGTKPVLKKKAAFLGSEVRLRDDTLPKAWI 235
Query: 194 AVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTN 253
++A G P+ + + GS+N + G +L + ++ ++ F+ +
Sbjct: 236 SLAVEGEPVNSPNYFVAKLAAQIFGSYNAFEPASRLQGIKLLDNIQEYQLCDNFNHFSLS 295
Query: 254 YKDTGLFGVY-AVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRAR 298
YKD+GL+G A +DDL + + + +L V++ +V RA+
Sbjct: 296 YKDSGLWGFSTATRNVTMIDDLIHFTLKQWNRLTISVTDTEVERAK 341
>pdb|1HR6|A Chain A, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|C Chain C, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|E Chain E, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|G Chain G, Yeast Mitochondrial Processing Peptidase
pdb|1HR7|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR8|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
Length = 475
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 82/318 (25%), Positives = 138/318 (43%), Gaps = 19/318 (5%)
Query: 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNST 60
+ FK TE R + E +E +GG+ +SRE Y A V ++DV L ++++ ++
Sbjct: 54 LAFKSTEHVEGRAMAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSETVRFPK 113
Query: 61 FDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEH 120
+ + ++ V+ + LH A+ LG ++ P I +I+K +
Sbjct: 114 ITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPRGLIPSISKYY 173
Query: 121 LQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSADPTTASQLVANEPAIFTGSE 180
L +Y + YT V A G L S P ++ A +TG E
Sbjct: 174 LLDYRNKFYTPENTVAAFVGVPHEKALELTGKYLGDWQSTHPPITKKV-----AQYTGGE 228
Query: 181 VRI----IDDDIP-LAQFAVAFAGASWTDPDSIALMVMQAML--GSWNKNSVGGKHMGSE 233
I + ++P L + F G PD AL +Q +L G GK M S
Sbjct: 229 SCIPPAPVFGNLPELFHIQIGFEGLPIDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSR 288
Query: 234 LAQRVGINE--IAESMMAFNTNYKDTGLFGV----YAVAKPDCLDDLAYAIMYETTKLAY 287
L V +N+ E+ +AFN +Y D+G+FG+ A P ++ +A +
Sbjct: 289 LYTHV-LNQYYFVENCVAFNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQMYNTFANKDL 347
Query: 288 RVSEADVTRARNQVAASL 305
R++E +V+RA+NQ+ +SL
Sbjct: 348 RLTEDEVSRAKNQLKSSL 365
>pdb|3CWB|B Chain B, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|O Chain O, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|B Chain B, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|O Chain O, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|O Chain O, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|B Chain B, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|O Chain O, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|B Chain B, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|O Chain O, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|B Chain B, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|O Chain O, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|B Chain B, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|O Chain O, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|B Chain B, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|O Chain O, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|B Chain B, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|O Chain O, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|B Chain B, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|O Chain O, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|B Chain B, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|O Chain O, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|B Chain B, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|O Chain O, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|B Chain B, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|O Chain O, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 441
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 134/302 (44%), Gaps = 16/302 (5%)
Query: 18 IENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXX 77
IE +GG L+ Y++RE+ TY + L V+ ++ L ++ F +T + +
Sbjct: 91 IEAVGGSLSVYSTREKMTYCVECLRDHVDTVMEYLLNVTTAPEFRPWEVTDLQPQLKVDK 150
Query: 78 XXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIA 137
+ ++LHA A++ T L + P I IT E L +++ ++T+ RM +
Sbjct: 151 AVAFQSPQVGVLENLHAAAYK-TALANPLYCPDYRIGKITSEQLHHFVQNNFTSARMALV 209
Query: 138 ASGAXXXXXXXXXXXXLFTKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAF 197
G L + A ++A A + G E+R + L AV
Sbjct: 210 GIGVKHSDLKQVAEQFLNIRSGAGTSSAK-------ATYWGGEIR-EQNGHSLVHAAVVT 261
Query: 198 AGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAE-SMMAFNTNYKD 256
GA+ ++ A V+Q +LG+ G + S+L Q V AFN NY D
Sbjct: 262 EGAAVGSAEANAFSVLQHVLGAGPLIKRGSS-VTSKLYQGVAKATTQPFDASAFNVNYSD 320
Query: 257 TGLFGVYAVAKPDCLDDLAYAIMYETTKLAY-RVSEADVTRARNQVAA----SLPTYPGY 311
+GLFG Y +++ ++ A M + A V+E DVT+A+NQ+ A S+ T G
Sbjct: 321 SGLFGFYTISQAAHAGEVIRAAMNQLKAAAQGGVTEEDVTKAKNQLKATYLMSVETAQGL 380
Query: 312 LD 313
L+
Sbjct: 381 LN 382
>pdb|1QCR|B Chain B, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 423
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/315 (23%), Positives = 138/315 (43%), Gaps = 18/315 (5%)
Query: 6 TEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQAR 65
T+ ++ + IE +GG L+ ++RE Y + L DV+ ++ L ++ F +
Sbjct: 61 TKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWE 120
Query: 66 ITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYI 125
+ + + + ++LHA A++ L ++ P I +T L +Y+
Sbjct: 121 VAALQPQLRIDKAVALQNPQAHVIENLHAAAYR-NALANSLYCPDYRIGKVTPVELHDYV 179
Query: 126 HTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSADPTTASQLVANEPAIFTGSEVRIID 185
H+T+ RM + G L + + A A + G E+R +
Sbjct: 180 QNHFTSARMALIGLGVSHPVLKQVAEQFLNIRGGLGLSGAK-------AKYHGGEIREQN 232
Query: 186 DDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRV--GINEI 243
D L A+ A+ ++ A V+Q +LG+ + G + S L Q V G+++
Sbjct: 233 GD-SLVHAALVAESAAIGSAEANAFSVLQHVLGA-GPHVKRGSNATSSLYQAVAKGVHQP 290
Query: 244 AESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAY-RVSEADVTRARNQVA 302
+ + AFN +Y D+GLFG Y +++ D+ A + +A +S DV A+N++
Sbjct: 291 FD-VSAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLK 349
Query: 303 A----SLPTYPGYLD 313
A S+ + G+LD
Sbjct: 350 AGYLMSVESSEGFLD 364
>pdb|1SQB|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|1SQP|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
Length = 453
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/315 (23%), Positives = 138/315 (43%), Gaps = 18/315 (5%)
Query: 6 TEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQAR 65
T+ ++ + IE +GG L+ ++RE Y + L DV+ ++ L ++ F +
Sbjct: 91 TKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWE 150
Query: 66 ITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYI 125
+ + + + ++LHA A++ L ++ P I +T L +Y+
Sbjct: 151 VAALQPQLRIDKAVALQNPQAHVIENLHAAAYR-NALANSLYCPDYRIGKVTPVELHDYV 209
Query: 126 HTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSADPTTASQLVANEPAIFTGSEVRIID 185
H+T+ RM + G L + + A A + G E+R +
Sbjct: 210 QNHFTSARMALIGLGVSHPVLKQVAEQFLNIRGGLGLSGAK-------AKYHGGEIREQN 262
Query: 186 DDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRV--GINEI 243
D L A+ A+ ++ A V+Q +LG+ + G + S L Q V G+++
Sbjct: 263 GD-SLVHAALVAESAAIGSAEANAFSVLQHVLGA-GPHVKRGSNATSSLYQAVAKGVHQP 320
Query: 244 AESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAY-RVSEADVTRARNQVA 302
+ + AFN +Y D+GLFG Y +++ D+ A + +A +S DV A+N++
Sbjct: 321 FD-VSAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLK 379
Query: 303 A----SLPTYPGYLD 313
A S+ + G+LD
Sbjct: 380 AGYLMSVESSEGFLD 394
>pdb|1BGY|B Chain B, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|N Chain N, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|B Chain B, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|B Chain B, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|B Chain B, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|2A06|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQQ|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|B Chain B, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|B Chain B, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|BB Chain b, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 439
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/315 (23%), Positives = 138/315 (43%), Gaps = 18/315 (5%)
Query: 6 TEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQAR 65
T+ ++ + IE +GG L+ ++RE Y + L DV+ ++ L ++ F +
Sbjct: 77 TKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWE 136
Query: 66 ITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYI 125
+ + + + ++LHA A++ L ++ P I +T L +Y+
Sbjct: 137 VAALQPQLRIDKAVALQNPQAHVIENLHAAAYR-NALANSLYCPDYRIGKVTPVELHDYV 195
Query: 126 HTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSADPTTASQLVANEPAIFTGSEVRIID 185
H+T+ RM + G L + + A A + G E+R +
Sbjct: 196 QNHFTSARMALIGLGVSHPVLKQVAEQFLNIRGGLGLSGAK-------AKYHGGEIREQN 248
Query: 186 DDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRV--GINEI 243
D L A+ A+ ++ A V+Q +LG+ + G + S L Q V G+++
Sbjct: 249 GD-SLVHAALVAESAAIGSAEANAFSVLQHVLGA-GPHVKRGSNATSSLYQAVAKGVHQP 306
Query: 244 AESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAY-RVSEADVTRARNQVA 302
+ + AFN +Y D+GLFG Y +++ D+ A + +A +S DV A+N++
Sbjct: 307 FD-VSAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLK 365
Query: 303 A----SLPTYPGYLD 313
A S+ + G+LD
Sbjct: 366 AGYLMSVESSEGFLD 380
>pdb|3BCC|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|B Chain B, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 422
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/303 (23%), Positives = 131/303 (43%), Gaps = 18/303 (5%)
Query: 18 IENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXX 77
IE +GG L+ ++RE Y + L DV ++ L ++ F + + +
Sbjct: 72 IEAVGGKLSVESTRENMAYTVECLRDDVEILMEFLLNVTTAPEFRPWEVADLQPQLKIDK 131
Query: 78 XXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIA 137
+ ++LHA A++ L ++ P I +T L +++ H+T+ RM +
Sbjct: 132 AVAFQNPQTHVIENLHAAAYR-NALADSLYCPDYRIGKVTSVELHDFVQNHFTSARMALV 190
Query: 138 ASGAXXXXXXXXXXXXLFTKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAF 197
G L + + A A + G E+R + D L A+
Sbjct: 191 GLGVSHPVLKNVAEQLLNIRGGLGLSGAK-------AKYRGGEIREQNGD-SLVHAAIVA 242
Query: 198 AGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRV--GINEIAESMMAFNTNYK 255
A+ ++ A V+Q +LG+ N + G + S L Q V G+++ + + AFN +Y
Sbjct: 243 ESAAIGGAEANAFSVLQHVLGA-NPHVKRGLNATSSLYQAVAKGVHQPFD-VSAFNASYS 300
Query: 256 DTGLFGVYAVAKPDCLDDLAYAIMYETTKLAY-RVSEADVTRARNQVAA----SLPTYPG 310
D+GLFG Y +++ + A + +A VS +V A+N++ A S+ + G
Sbjct: 301 DSGLFGFYTISQAAYAGQVIKAAYNQVKTIAQGNVSNENVQAAKNKLKAKYLMSVESSEG 360
Query: 311 YLD 313
+L+
Sbjct: 361 FLE 363
>pdb|1BCC|B Chain B, Cytochrome Bc1 Complex From Chicken
Length = 422
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/315 (22%), Positives = 135/315 (42%), Gaps = 18/315 (5%)
Query: 6 TEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQAR 65
T+ ++ + IE +GG L+ ++RE Y + L DV ++ L ++ F
Sbjct: 60 TKGASSFKITRGIEAVGGKLSVESTRENMAYTVECLRDDVEILMEFLLNVTTAPEFRPWE 119
Query: 66 ITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYI 125
+ + + + ++LHA A++ L ++ P I +T L +++
Sbjct: 120 VADLQPQLKIDKAVAFQNPQTHVIENLHAAAYR-NALADSLYCPDYRIGKVTSVELHDFV 178
Query: 126 HTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSADPTTASQLVANEPAIFTGSEVRIID 185
H+T+ RM + G L + + A A + G E+R +
Sbjct: 179 QNHFTSARMALVGLGVSHPVLKNVAEQLLNIRGGLGLSGAK-------AKYRGGEIREQN 231
Query: 186 DDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRV--GINEI 243
D L A+ A+ ++ A V+Q +LG+ N + G + S L Q V G++
Sbjct: 232 GD-SLVHAAIVAESAAIGGAEANAFSVLQHVLGA-NPHVKRGLNATSSLYQAVAKGVHNP 289
Query: 244 AESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAY-RVSEADVTRARNQVA 302
+ + AFN +Y D+GLFG Y +++ + A + +A VS +V A+N++
Sbjct: 290 FD-VSAFNASYSDSGLFGFYTISQAAYAGQVIKAAYNQVKTIAQGNVSNENVQAAKNKLK 348
Query: 303 A----SLPTYPGYLD 313
A S+ + G+L+
Sbjct: 349 AKYLMSVESSEGFLE 363
>pdb|3EOQ|A Chain A, The Crystal Structure Of Putative Zinc Protease Beta-
Subunit From Thermus Thermophilus Hb8
pdb|3EOQ|B Chain B, The Crystal Structure Of Putative Zinc Protease Beta-
Subunit From Thermus Thermophilus Hb8
Length = 406
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 1/139 (0%)
Query: 2 IFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTF 61
+FKG E A + + G NA+TS E T YY VL + + L + A +L+ +
Sbjct: 52 VFKGPEDXDALAVNRAFDRXGAQYNAFTSEEATVYYGAVLPEFAYDLLGLFAKLLRPALR 111
Query: 62 DQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHL 121
++ T E+ VIL ++ A FQ PLG ++LG ++I +T+E
Sbjct: 112 EEDFQT-EKLVILEEIARYQDRPGFXAYEWARARFFQGHPLGNSVLGTRESITALTREGX 170
Query: 122 QNYIHTHYTAPRMVIAASG 140
Y Y V+AA+G
Sbjct: 171 AAYHRRRYLPKNXVLAATG 189
>pdb|3AMJ|C Chain C, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
pdb|3AMJ|A Chain A, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
Length = 437
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 60/130 (46%), Gaps = 1/130 (0%)
Query: 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNST 60
M+FKGT+ + + + MGG NA+T+R+ T YY +V +++ + + AD + N
Sbjct: 56 MMFKGTKDVGPGEFSKRVAAMGGRDNAFTTRDYTAYYQQVPSSRLSDVMGLEADRMANLV 115
Query: 61 FDQARITRERDVILRXXX-XXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKE 119
D +E VI ++ L A ++ P ++G +I+ +T +
Sbjct: 116 VDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIGWMNDIQNMTAQ 175
Query: 120 HLQNYIHTHY 129
++++ Y
Sbjct: 176 DVRDWYKRWY 185
>pdb|3AMI|A Chain A, The Crystal Structure Of The M16b Metallopeptidase Subunit
From Sphingomonas Sp. A1
pdb|3AMI|B Chain B, The Crystal Structure Of The M16b Metallopeptidase Subunit
From Sphingomonas Sp. A1
Length = 445
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 60/130 (46%), Gaps = 1/130 (0%)
Query: 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNST 60
M+FKGT+ + + + MGG NA+T+R+ T YY +V +++ + + AD + N
Sbjct: 56 MMFKGTKDVGPGEFSKRVAAMGGRDNAFTTRDYTAYYQQVPSSRLSDVMGLEADRMANLV 115
Query: 61 FDQARITRERDVILRXXX-XXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKE 119
D +E VI ++ L A ++ P ++G +I+ +T +
Sbjct: 116 VDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIGWMNDIQNMTAQ 175
Query: 120 HLQNYIHTHY 129
++++ Y
Sbjct: 176 DVRDWYKRWY 185
>pdb|3AMJ|B Chain B, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
pdb|3AMJ|D Chain D, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
Length = 424
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 100/252 (39%), Gaps = 17/252 (6%)
Query: 14 LEEEIENMGGHLNAYTSREQTTYYAKVLDK--DVNNALDILADILQNSTFDQARITRERD 71
+ + + ++G L ++ ++ +VL + N+AL IL DIL + TF + RER
Sbjct: 70 IADRLADIGARLGGGAEADRASFSLRVLSSPAERNSALTILRDILAHPTFPAPVLERERA 129
Query: 72 VILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTA 131
+ ++ A+ P G + ++ I+++ L ++ THY A
Sbjct: 130 RAIAGLREAQTQPGSILGRRFTELAYGKHPYGH--VSSVATLQKISRDQLVSFHRTHYVA 187
Query: 132 PRMVIAASGAXXXXXXXXXXXXLFTKLSAD-PTTASQLVANEPAIFTGSEVRIIDDDIPL 190
V+ G + +L+AD P A+ +PA+ + RI +
Sbjct: 188 RTAVVTLVG----DITRAEAETIAQQLTADLPAGATLPPLPDPAMPRATVERIANPAT-Q 242
Query: 191 AQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAF 250
A A+ DPD L+V LG S + E+ + G++ A S +
Sbjct: 243 AHIAIGMPTLKRGDPDFFPLVVGNYALGGGGFES----RLMKEIRDKRGLSYGAYS---Y 295
Query: 251 NTNYKDTGLFGV 262
+ K GLF +
Sbjct: 296 FSPQKSMGLFQI 307
>pdb|1EZV|B Chain B, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KYO|B Chain B, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|M Chain M, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KB9|B Chain B, Yeast Cytochrome Bc1 Complex
pdb|1P84|B Chain B, Hdbt Inhibited Yeast Cytochrome Bc1 Complex
pdb|2IBZ|B Chain B, Yeast Cytochrome Bc1 Complex With Stigmatellin
pdb|3CX5|B Chain B, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CX5|M Chain M, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CXH|B Chain B, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|3CXH|M Chain M, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer
Length = 352
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 74/189 (39%), Gaps = 9/189 (4%)
Query: 3 FKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFD 62
F+ T R+A L E E +GG + RE T A L D+ ++ LAD+L + F
Sbjct: 40 FQNTNTRSALKLVRESELLGGTFKSTLDREYITLKATFLKDDLPYYVNALADVLYKTAFK 99
Query: 63 QARITRERDVILRXXXXXXXXX-XXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHL 121
+T R D L+A F+ LG +L ++ ++ + +
Sbjct: 100 PHELTESVLPAARYDYAVAEQCPVKSAEDQLYAITFR-KGLGNPLL--YDGVERVSLQDI 156
Query: 122 QNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSADPTTASQLVANEPAIFTGSE- 180
+++ YT + ++ L + L A + S+ +EP F G E
Sbjct: 157 KDFADKVYTKENLEVSGENVVEADLKRFVDESLLSTLPAGKSLVSK---SEPKFFLGEEN 213
Query: 181 -VRIIDDDI 188
VR I D +
Sbjct: 214 RVRFIGDSV 222
>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex
pdb|3CWW|B Chain B, Crystal Structure Of Ide-Bradykinin Complex
Length = 990
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 1 MIFKGTEKRTAR-DLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNS 59
M+F GT+K + + + G NA+TS E T YY V + + ALD A +
Sbjct: 84 MLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSP 143
Query: 60 TFDQARITRERDVI 73
FD++ RE + +
Sbjct: 144 LFDESAKDREVNAV 157
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|3E4A|B Chain B, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|2WK3|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
pdb|2WK3|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
Length = 1019
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 1 MIFKGTEKRTAR-DLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNS 59
M+F GT+K + + + G NA+TS E T YY V + + ALD A +
Sbjct: 113 MLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSP 172
Query: 60 TFDQARITRERDVI 73
FD++ RE + +
Sbjct: 173 LFDESAKDREVNAV 186
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
pdb|3E4Z|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
Length = 990
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 1 MIFKGTEKRTAR-DLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNS 59
M+F GT+K + + + G NA+TS E T YY V + + ALD A +
Sbjct: 84 MLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSP 143
Query: 60 TFDQARITRERDVI 73
FD++ RE + +
Sbjct: 144 LFDESAKDREVNAV 157
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WBY|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WC0|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|2WC0|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|3H44|A Chain A, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3H44|B Chain B, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3OFI|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3OFI|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3N56|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N56|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N57|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|3N57|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|2YPU|A Chain A, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
pdb|2YPU|B Chain B, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
Length = 990
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 1 MIFKGTEKRTAR-DLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNS 59
M+F GT+K + + + G NA+TS E T YY V + + ALD A +
Sbjct: 84 MLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSP 143
Query: 60 TFDQARITRERDVI 73
FD++ RE + +
Sbjct: 144 LFDESAKDREVNAV 157
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|3QZ2|B Chain B, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|4DTT|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
pdb|4DTT|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
Length = 990
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 1 MIFKGTEKRTAR-DLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNS 59
M+F GT+K + + + G NA+TS E T YY V + + ALD A +
Sbjct: 84 MLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSP 143
Query: 60 TFDQARITRERDVI 73
FD++ RE + +
Sbjct: 144 LFDESAKDREVNAV 157
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|3HGZ|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
Length = 969
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 1 MIFKGTEKRTAR-DLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNS 59
M+F GT+K + + + G NA+TS E T YY V + + ALD A +
Sbjct: 71 MLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSP 130
Query: 60 TFDQARITRERDVI 73
FD++ RE + +
Sbjct: 131 LFDESAKDREVNAV 144
>pdb|3P7O|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) E111f Mutant With
Two Bound Peptides
Length = 1019
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 61/167 (36%), Gaps = 8/167 (4%)
Query: 1 MIFKGTEKRTAR-DLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNS 59
M+F GT+K + + + G NA+TS E T YY V + + ALD A
Sbjct: 113 MLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLCP 172
Query: 60 TFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTI--- 116
FD + RE + + +F AT P + G ++T
Sbjct: 173 LFDASCKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQ 232
Query: 117 ----TKEHLQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLS 159
+E L + T+Y++ M I G LF+++
Sbjct: 233 EGIDVREELLKFHSTYYSSNLMAICVLGRESLDDLTNLVVKLFSEVE 279
>pdb|3TUV|A Chain A, Crystal Structure Of Insulysin With Bound Atp
Length = 1019
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 61/167 (36%), Gaps = 8/167 (4%)
Query: 1 MIFKGTEKRTAR-DLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNS 59
M+F GT+K + + + G NA+TS E T YY V + + ALD A
Sbjct: 113 MLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLCP 172
Query: 60 TFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTI--- 116
FD + RE + + +F AT P + G ++T
Sbjct: 173 LFDASCKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQ 232
Query: 117 ----TKEHLQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLS 159
+E L + T+Y++ M I G LF+++
Sbjct: 233 EGIDVREELLKFHSTYYSSNLMAICVLGRESLDDLTNLVVKLFSEVE 279
>pdb|3P7L|A Chain A, Rat Insulin Degrading Enzyme (Insulysin)
Length = 978
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 61/167 (36%), Gaps = 8/167 (4%)
Query: 1 MIFKGTEKRTAR-DLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNS 59
M+F GT+K + + + G NA+TS E T YY V + + ALD A
Sbjct: 72 MLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLCP 131
Query: 60 TFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTI--- 116
FD + RE + + +F AT P + G ++T
Sbjct: 132 LFDASCKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQ 191
Query: 117 ----TKEHLQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLS 159
+E L + T+Y++ M I G LF+++
Sbjct: 192 EGIDVREELLKFHSTYYSSNLMAICVLGRESLDDLTNLVVKLFSEVE 238
>pdb|2JG4|A Chain A, Substrate-Free Ide Structure In Its Closed Conformation
pdb|2JG4|B Chain B, Substrate-Free Ide Structure In Its Closed Conformation
Length = 990
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 1 MIFKGTEKRTAR-DLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNS 59
M+F GT+K + + + G NA+TS E T YY V + + ALD A
Sbjct: 84 MLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLCP 143
Query: 60 TFDQARITRERDVI 73
FD++ RE + +
Sbjct: 144 LFDESCKDREVNAV 157
>pdb|2G47|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G47|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G48|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G48|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G49|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G49|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G54|A Chain A, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G54|B Chain B, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G56|A Chain A, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2G56|B Chain B, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2JBU|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|2JBU|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|3E50|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
pdb|3E50|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
Length = 990
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 1 MIFKGTEKRTAR-DLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNS 59
M+F GT+K + + + G NA+TS E T YY V + + ALD A
Sbjct: 84 MLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLCP 143
Query: 60 TFDQARITRERDVI 73
FD++ RE + +
Sbjct: 144 LFDESCKDREVNAV 157
>pdb|1Q2L|A Chain A, Crystal Structure Of Pitrilysin
Length = 939
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 1 MIFKGTEKRTARD-LEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNS 59
M G++K D L E ++ GG NA T+ +T +Y +V + + A+D LAD +
Sbjct: 70 MSLMGSKKYPQADSLAEYLKMHGGSHNASTAPYRTAFYLEVENDALPGAVDRLADAIAEP 129
Query: 60 TFDQARITRERDVI 73
D+ RER+ +
Sbjct: 130 LLDKKYAERERNAV 143
>pdb|4A8T|A Chain A, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis Lacking Its C-Terminal Helix, With
Bound N5-(Phosphonoacetyl)-L-Ornithine
Length = 339
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNST 60
MIF+ + RT E +E +GGH Y + Q +D + L L DIL
Sbjct: 68 MIFQQSSTRTRVSFETAMEQLGGH-GEYLAPGQIQLGGHETIEDTSRVLSRLVDIL---- 122
Query: 61 FDQARITRERDVI 73
AR+ R ++
Sbjct: 123 --MARVERHHSIV 133
>pdb|3TXX|A Chain A, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|B Chain B, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|C Chain C, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|D Chain D, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|E Chain E, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|F Chain F, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|G Chain G, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|H Chain H, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|I Chain I, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|J Chain J, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|K Chain K, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|L Chain L, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
Length = 359
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNST 60
MIF+ + RT E +E +GGH Y + Q +D + L L DIL
Sbjct: 66 MIFQQSSTRTRVSFETAMEQLGGH-GEYLAPGQIQLGGHETIEDTSRVLSRLVDIL---- 120
Query: 61 FDQARITRERDVI 73
AR+ R ++
Sbjct: 121 --MARVERHHSIV 131
>pdb|4A8H|A Chain A, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis With
N-(Phosphonoacetyl)-Putrescine
pdb|4A8H|B Chain B, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis With
N-(Phosphonoacetyl)-Putrescine
pdb|4A8P|A Chain A, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis With
N5-(Phosphonoacetyl)-L-Ornithine
pdb|4A8P|B Chain B, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis With
N5-(Phosphonoacetyl)-L-Ornithine
pdb|4A8P|C Chain C, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis With
N5-(Phosphonoacetyl)-L-Ornithine
pdb|4A8P|D Chain D, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis With
N5-(Phosphonoacetyl)-L-Ornithine
pdb|4A8P|E Chain E, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis With
N5-(Phosphonoacetyl)-L-Ornithine
pdb|4A8P|F Chain F, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis With
N5-(Phosphonoacetyl)-L-Ornithine
Length = 355
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNST 60
MIF+ + RT E +E +GGH Y + Q +D + L L DIL
Sbjct: 46 MIFQQSSTRTRVSFETAMEQLGGH-GEYLAPGQIQLGGHETIEDTSRVLSRLVDIL---- 100
Query: 61 FDQARITRERDVI 73
AR+ R ++
Sbjct: 101 --MARVERHHSIV 111
>pdb|4F2G|A Chain A, The Crystal Structure Of Ornithine Carbamoyltransferase
From Burkholderia Thailandensis E264
Length = 309
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNST 60
MIF+ + RT E I +GGH ++R+ + ++ D + + DI+ T
Sbjct: 50 MIFEKSSTRTRLSFEAGIFQLGGHAVFMSTRDTQLGRGEPVE-DSAQVISRMVDIIMIRT 108
Query: 61 FDQARITR 68
F+Q I R
Sbjct: 109 FEQDIIQR 116
>pdb|3GWB|A Chain A, Crystal Structure Of Peptidase M16 Inactive Domain From
Pseudomonas Fluorescens. Northeast Structural Genomics
Target Plr293l
pdb|3GWB|B Chain B, Crystal Structure Of Peptidase M16 Inactive Domain From
Pseudomonas Fluorescens. Northeast Structural Genomics
Target Plr293l
Length = 434
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 69/195 (35%), Gaps = 12/195 (6%)
Query: 48 ALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTIL 107
AL + A+++ TF + R ++ L + L + P
Sbjct: 111 ALKLFAEVVGKPTFPADSLARIKNQXLAGFEYQKQNPGKLASLELXKRLYGTHPYAHASD 170
Query: 108 GPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSADPTTASQ 167
G A++I IT L+ + Y A +VIA G + L P A
Sbjct: 171 GDAKSIPPITLAQLKAFHAKAYAAGNVVIALVGDLSRSDAEAIAAQVSAALPKGPALAKI 230
Query: 168 LVANEPAIFTGSEVRIIDDDIPLAQFAVAFA--GASWTDPDSIALMVMQAMLGSWNKNSV 225
EP + I + P +Q ++ A G DPD A+ + +LG
Sbjct: 231 EQPAEP------KASIGHIEFPSSQTSLXLAQLGIDRDDPDYAAVSLGNQILGGGGF--- 281
Query: 226 GGKHMGSELAQRVGI 240
G + SE+ ++ G+
Sbjct: 282 -GTRLXSEVREKRGL 295
>pdb|2ZDI|A Chain A, Crystal Structure Of Prefoldin From Pyrococcus
Horikoshii Ot3
pdb|2ZDI|B Chain B, Crystal Structure Of Prefoldin From Pyrococcus
Horikoshii Ot3
Length = 117
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQ 33
+I K T+++ ++L+E+IE + LNA +EQ
Sbjct: 62 LIVKTTKEKAVQELKEKIETLEVRLNALNRQEQ 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,539,152
Number of Sequences: 62578
Number of extensions: 306174
Number of successful extensions: 743
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 678
Number of HSP's gapped (non-prelim): 40
length of query: 323
length of database: 14,973,337
effective HSP length: 99
effective length of query: 224
effective length of database: 8,778,115
effective search space: 1966297760
effective search space used: 1966297760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)