Query 020661
Match_columns 323
No_of_seqs 126 out of 1151
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 04:09:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020661.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020661hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0960 Mitochondrial processi 100.0 6.1E-47 1.3E-51 312.6 25.1 312 1-313 82-394 (467)
2 COG0612 PqqL Predicted Zn-depe 100.0 5.1E-43 1.1E-47 316.3 25.1 304 1-316 66-379 (438)
3 KOG2067 Mitochondrial processi 100.0 9E-43 2E-47 288.3 21.5 313 1-317 73-394 (472)
4 TIGR02110 PQQ_syn_pqqF coenzym 100.0 8.2E-41 1.8E-45 308.4 32.1 288 1-303 49-348 (696)
5 PRK15101 protease3; Provisiona 100.0 4.4E-37 9.5E-42 302.5 29.3 298 1-308 93-403 (961)
6 PTZ00432 falcilysin; Provision 100.0 6.7E-33 1.4E-37 271.1 26.2 297 1-307 139-502 (1119)
7 COG1025 Ptr Secreted/periplasm 100.0 1.2E-26 2.7E-31 213.6 27.1 304 1-313 73-387 (937)
8 KOG0959 N-arginine dibasic con 100.0 4E-26 8.6E-31 213.6 24.9 301 1-312 77-391 (974)
9 PRK15101 protease3; Provisiona 99.9 2.2E-25 4.8E-30 219.9 21.7 287 13-317 582-874 (961)
10 PF05193 Peptidase_M16_C: Pept 99.9 5.2E-25 1.1E-29 175.8 15.7 178 115-301 1-184 (184)
11 COG1026 Predicted Zn-dependent 99.9 6E-23 1.3E-27 190.2 22.3 296 1-308 66-390 (978)
12 KOG2583 Ubiquinol cytochrome c 99.9 1.1E-19 2.4E-24 151.9 26.4 294 2-311 72-370 (429)
13 COG1026 Predicted Zn-dependent 99.8 3.6E-19 7.8E-24 165.4 20.8 292 4-314 578-902 (978)
14 KOG0961 Predicted Zn2+-depende 99.8 1.1E-18 2.4E-23 154.6 16.7 302 1-313 65-392 (1022)
15 KOG2019 Metalloendoprotease HM 99.8 4.8E-18 1.1E-22 150.8 19.5 296 2-309 99-427 (998)
16 KOG2019 Metalloendoprotease HM 99.8 6.7E-18 1.5E-22 149.9 17.8 290 2-307 610-926 (998)
17 PTZ00432 falcilysin; Provision 99.8 1.1E-16 2.4E-21 157.8 24.5 287 4-307 711-1042(1119)
18 PF00675 Peptidase_M16: Insuli 99.7 8.1E-17 1.8E-21 123.9 10.7 109 1-109 40-148 (149)
19 COG1025 Ptr Secreted/periplasm 99.6 1.5E-13 3.2E-18 128.1 22.4 275 22-314 570-851 (937)
20 KOG0959 N-arginine dibasic con 99.5 1.1E-11 2.3E-16 117.7 21.9 277 20-313 575-865 (974)
21 KOG0961 Predicted Zn2+-depende 99.3 2.3E-11 5.1E-16 108.9 13.1 283 10-307 607-920 (1022)
22 PF08367 M16C_assoc: Peptidase 97.7 0.00055 1.2E-08 57.2 11.1 76 2-79 119-205 (248)
23 TIGR02110 PQQ_syn_pqqF coenzym 97.2 0.018 4E-07 55.0 15.9 206 21-282 487-695 (696)
24 KOG2067 Mitochondrial processi 97.1 0.0033 7.2E-08 54.2 8.3 119 22-143 325-445 (472)
25 COG0612 PqqL Predicted Zn-depe 96.6 0.041 9E-07 50.1 12.1 129 13-143 292-432 (438)
26 KOG0960 Mitochondrial processi 96.3 0.03 6.4E-07 48.5 8.6 138 4-143 304-450 (467)
27 PF00675 Peptidase_M16: Insuli 93.7 0.21 4.5E-06 38.0 5.9 115 184-312 6-123 (149)
28 PF09851 SHOCT: Short C-termin 73.1 6.7 0.00014 20.8 3.0 23 280-302 6-30 (31)
29 PF03410 Peptidase_M44: Protei 71.6 78 0.0017 29.1 10.8 131 24-163 56-194 (590)
30 PHA03081 putative metalloprote 70.6 45 0.00099 30.5 9.2 128 25-163 57-194 (595)
31 PF09186 DUF1949: Domain of un 68.7 23 0.0005 21.3 5.9 46 11-56 8-53 (56)
32 PF05193 Peptidase_M16_C: Pept 62.3 15 0.00033 28.1 4.5 42 32-73 140-184 (184)
33 cd04910 ACT_AK-Ectoine_1 ACT d 60.5 42 0.00091 21.8 5.4 53 5-58 13-66 (71)
34 cd04923 ACT_AK-LysC-DapG-like_ 54.8 46 0.001 20.2 5.3 45 11-56 17-61 (63)
35 PRK06063 DNA polymerase III su 54.4 36 0.00079 29.5 5.8 65 2-71 239-306 (313)
36 PF13840 ACT_7: ACT domain ; P 54.4 53 0.0011 20.7 5.3 40 13-54 26-65 (65)
37 cd04922 ACT_AKi-HSDH-ThrA_2 AC 54.1 50 0.0011 20.4 5.5 47 11-57 18-65 (66)
38 cd04936 ACT_AKii-LysC-BS-like_ 52.8 50 0.0011 20.0 5.3 45 11-56 17-61 (63)
39 cd04916 ACT_AKiii-YclM-BS_2 AC 50.7 57 0.0012 20.1 5.6 47 12-58 19-66 (66)
40 cd04919 ACT_AK-Hom3_2 ACT doma 50.7 58 0.0013 20.1 5.6 47 11-57 18-65 (66)
41 COG1725 Predicted transcriptio 50.0 52 0.0011 24.1 5.1 66 231-303 52-121 (125)
42 COG0157 NadC Nicotinate-nucleo 48.8 48 0.001 28.0 5.3 37 114-150 215-251 (280)
43 PF07939 DUF1685: Protein of u 46.8 12 0.00025 23.6 1.1 33 289-321 1-33 (64)
44 cd04924 ACT_AK-Arch_2 ACT doma 46.3 69 0.0015 19.7 5.4 45 12-56 19-64 (66)
45 PRK08385 nicotinate-nucleotide 46.1 50 0.0011 28.1 5.2 42 111-152 206-250 (278)
46 PF01729 QRPTase_C: Quinolinat 45.2 24 0.00053 27.5 3.0 44 109-152 102-146 (169)
47 KOG3432 Vacuolar H+-ATPase V1 43.9 63 0.0014 22.9 4.4 47 114-160 43-89 (121)
48 PRK06978 nicotinate-nucleotide 43.2 65 0.0014 27.7 5.4 39 112-152 230-268 (294)
49 PRK06559 nicotinate-nucleotide 42.1 62 0.0014 27.7 5.1 39 112-152 222-260 (290)
50 PRK09016 quinolinate phosphori 41.5 65 0.0014 27.7 5.1 40 111-152 232-271 (296)
51 cd04914 ACT_AKi-DapG-BS_1 ACT 41.0 89 0.0019 19.8 4.7 48 12-60 17-64 (67)
52 PF12122 DUF3582: Protein of u 40.9 1E+02 0.0023 21.6 5.3 49 11-60 13-62 (101)
53 PF08367 M16C_assoc: Peptidase 38.1 2.3E+02 0.0051 23.5 9.6 109 189-303 90-204 (248)
54 cd04937 ACT_AKi-DapG-BS_2 ACT 38.1 99 0.0022 19.2 5.4 45 11-56 18-62 (64)
55 PRK06195 DNA polymerase III su 37.2 72 0.0016 27.6 4.9 67 2-68 227-304 (309)
56 PRK06543 nicotinate-nucleotide 36.6 86 0.0019 26.7 5.1 40 111-152 217-256 (281)
57 cd04915 ACT_AK-Ectoine_2 ACT d 34.9 1.2E+02 0.0026 19.1 5.9 45 13-57 20-65 (66)
58 PF10369 ALS_ss_C: Small subun 34.8 1.2E+02 0.0025 19.9 4.5 44 10-54 15-58 (75)
59 PRK05986 cob(I)alamin adenolsy 33.9 67 0.0014 25.6 3.8 38 113-152 130-167 (191)
60 TIGR01334 modD putative molybd 33.8 1.2E+02 0.0025 25.9 5.5 40 113-152 214-254 (277)
61 PRK07896 nicotinate-nucleotide 33.8 1.2E+02 0.0026 26.0 5.6 42 111-152 223-265 (289)
62 PHA01346 hypothetical protein 33.6 85 0.0018 17.8 3.1 25 54-78 25-49 (53)
63 cd04892 ACT_AK-like_2 ACT doma 33.4 1.1E+02 0.0024 18.3 5.8 46 12-57 18-64 (65)
64 KOG1387 Glycosyltransferase [C 33.4 1.5E+02 0.0033 26.2 6.1 52 99-156 49-102 (465)
65 PRK06106 nicotinate-nucleotide 32.3 1.1E+02 0.0023 26.2 5.0 39 112-152 219-257 (281)
66 PF13348 Y_phosphatase3C: Tyro 31.5 35 0.00075 21.7 1.6 39 263-301 23-67 (68)
67 PF03197 FRD2: Bacteriophage F 30.5 86 0.0019 21.7 3.3 27 257-283 75-101 (102)
68 PF04444 Dioxygenase_N: Catech 29.8 1.4E+02 0.003 19.6 4.2 34 270-303 3-38 (74)
69 TIGR00708 cobA cob(I)alamin ad 28.4 98 0.0021 24.2 3.9 37 114-152 113-149 (173)
70 PRK07414 cob(I)yrinic acid a,c 28.1 92 0.002 24.5 3.7 37 114-152 131-167 (178)
71 PF10905 DUF2695: Protein of u 27.8 54 0.0012 19.9 1.9 24 7-30 28-51 (53)
72 PRK05848 nicotinate-nucleotide 27.4 1.8E+02 0.0039 24.7 5.6 40 113-152 208-248 (273)
73 PF02603 Hpr_kinase_N: HPr Ser 26.8 81 0.0018 23.1 3.1 44 111-154 60-104 (127)
74 PRK06096 molybdenum transport 26.5 1.8E+02 0.004 24.8 5.5 30 15-44 53-88 (284)
75 cd04890 ACT_AK-like_1 ACT doma 26.4 1.6E+02 0.0034 17.9 5.3 42 11-53 17-58 (62)
76 COG3462 Predicted membrane pro 25.9 1E+02 0.0022 21.9 3.1 31 43-73 85-115 (117)
77 PRK07428 nicotinate-nucleotide 24.8 1.9E+02 0.0041 24.9 5.3 14 32-45 87-100 (288)
78 PRK05742 nicotinate-nucleotide 24.1 1.8E+02 0.0038 24.9 5.0 34 115-150 217-250 (277)
79 cd04918 ACT_AK1-AT_2 ACT domai 23.4 1.9E+02 0.0042 17.9 5.5 46 12-57 18-64 (65)
80 CHL00100 ilvH acetohydroxyacid 23.4 2.4E+02 0.0052 22.1 5.2 47 7-54 94-140 (174)
81 cd04921 ACT_AKi-HSDH-ThrA-like 23.3 2.1E+02 0.0046 18.4 5.3 45 12-56 19-64 (80)
82 PF14257 DUF4349: Domain of un 23.0 4.2E+02 0.009 22.2 7.1 69 11-79 65-143 (262)
83 KOG0088 GTPase Rab21, small G 23.0 1.2E+02 0.0025 23.4 3.2 32 116-147 99-133 (218)
84 PF03919 mRNA_cap_C: mRNA capp 22.9 1.2E+02 0.0027 21.4 3.3 40 256-295 65-104 (105)
85 PF14085 DUF4265: Domain of un 22.9 2.7E+02 0.006 20.0 5.2 42 10-54 66-108 (117)
86 PF13875 DUF4202: Domain of un 22.7 3.9E+02 0.0085 21.2 7.1 79 47-160 87-165 (185)
87 cd04920 ACT_AKiii-DAPDC_2 ACT 22.5 2E+02 0.0044 17.8 5.1 45 12-57 18-62 (63)
88 KOG0147 Transcriptional coacti 22.1 2.1E+02 0.0045 26.8 5.2 48 11-58 467-516 (549)
89 COG5466 Predicted small metal- 21.8 2.1E+02 0.0046 17.7 4.3 37 266-302 19-57 (59)
90 PF09413 DUF2007: Domain of un 21.8 1.7E+02 0.0038 18.2 3.6 42 14-55 15-65 (67)
91 cd00561 CobA_CobO_BtuR ATP:cor 21.6 1.6E+02 0.0035 22.7 3.9 39 112-152 109-147 (159)
92 PF01514 YscJ_FliF: Secretory 20.7 1.2E+02 0.0027 24.4 3.3 50 3-54 32-81 (206)
93 COG1163 DRG Predicted GTPase [ 20.4 2.6E+02 0.0057 24.6 5.2 43 111-154 194-236 (365)
94 cd01573 modD_like ModD; Quinol 20.2 2.6E+02 0.0056 23.8 5.2 18 135-152 205-222 (272)
95 COG3041 Uncharacterized protei 20.2 3E+02 0.0065 18.9 4.4 47 277-323 9-57 (91)
96 cd01568 QPRTase_NadC Quinolina 20.1 2.9E+02 0.0064 23.4 5.6 32 117-153 190-221 (269)
97 PF07521 RMMBL: RNA-metabolisi 20.1 1.4E+02 0.0031 17.0 2.6 24 116-141 18-41 (43)
98 KOG2583 Ubiquinol cytochrome c 20.0 6.6E+02 0.014 22.8 8.7 106 32-143 316-421 (429)
No 1
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-47 Score=312.63 Aligned_cols=312 Identities=54% Similarity=0.846 Sum_probs=294.4
Q ss_pred CccccCCCCChHHHHHHHHhcCCeeeeeecceeEEEEEEeccccHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHh
Q 020661 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEV 80 (323)
Q Consensus 1 ~~f~Gt~~~~~~~~~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~~~~~~~~~~~~~~~~ 80 (323)
|+|+||++++...+..+++..|+.+|++|++|.+.|++++.++++++++++|++++.+..+.+..++++|..+++|++..
T Consensus 82 laFKGT~~Rs~~alElEieniGahLNAytSReqT~yyakal~~dv~kavdiLaDIlqns~L~~s~IerER~vILrEmqev 161 (467)
T KOG0960|consen 82 LAFKGTKNRSQAALELEIENIGAHLNAYTSREQTVYYAKALSKDVPKAVDILADILQNSKLEESAIERERDVILREMQEV 161 (467)
T ss_pred HHhcCCCcchhHHHHHHHHHHHHHhcccccccceeeehhhccccchHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCChHHHHHHHHHHHhcCCCCCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHHHHhcCCCC
Q 020661 81 EGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSA 160 (323)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~~~~~~~~~ 160 (323)
..+......+.++...|.++|+++++.|+.+.|++|+.+||++|.+.+|.+++|++..+|.++++++.++++++|+.++.
T Consensus 162 d~~~~eVVfdhLHatafQgtPL~~tilGp~enI~si~r~DL~~yi~thY~~~RmVlaaaGgV~He~lv~la~k~fg~~~~ 241 (467)
T KOG0960|consen 162 DKNHQEVVFDHLHATAFQGTPLGRTILGPSENIKSISRADLKDYINTHYKASRMVLAAAGGVKHEELVKLAEKYFGDLSK 241 (467)
T ss_pred HhhhhHHHHHHHHHHHhcCCcccccccChhhhhhhhhHHHHHHHHHhcccCccEEEEecCCcCHHHHHHHHHHHcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred CCCcccccccCCCccccCCceeeecCCCCceEEEEEeecCCCCCcchHHHHHHHHHcCCCCCCCCCCCCcccHHHHHhcc
Q 020661 161 DPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGI 240 (323)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~~l~~~~~~~~~~~~~~s~L~~~lre 240 (323)
...+..+... +++.|.+.+++...++.|..++.+++-+++|++||+.++.|.++++|.|.++.|.|....++|-+.+-+
T Consensus 242 ~~~~~~~~~~-~~~~FtgsEvR~rdd~lP~a~~AiAVEG~~w~~pD~~~l~van~iiG~wdr~~g~g~~~~s~La~~~~~ 320 (467)
T KOG0960|consen 242 LQTGDKVPLV-PPARFTGSEVRVRDDDLPLAHIAIAVEGVSWAHPDYFALMVANTIIGNWDRTEGGGRNLSSRLAQKIQQ 320 (467)
T ss_pred cccCcCCCCC-CCccccCceeeecCCCCchhheeeeEecCCcCCccHHHHHHHHHHhhhhhcccCCccCCccHHHHHHHH
Confidence 4433322221 466789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceehhcccccCCCCcccEEEEeec-CcccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCCCCCCCC
Q 020661 241 NEIAESMMAFNTNYKDTGLFGVYAVA-KPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQVAASLPTYPGYLD 313 (323)
Q Consensus 241 ~g~~y~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~l~~~is~~el~~ak~~~~~~~~~~~~~~~ 313 (323)
..++.++.+++..|.+.|+|++|+.+ ++..++.++..+..+..+|..-+|+.|+++||.+++.++...+|...
T Consensus 321 ~~l~~sfqsFnt~YkDTGLwG~y~V~~~~~~iddl~~~vl~eW~rL~~~vteaEV~RAKn~Lkt~Lll~ldgtt 394 (467)
T KOG0960|consen 321 DQLCHSFQSFNTSYKDTGLWGIYFVTDNLTMIDDLIHSVLKEWMRLATSVTEAEVERAKNQLKTNLLLSLDGTT 394 (467)
T ss_pred HHHHHHHhhhhcccccccceeEEEEecChhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCC
Confidence 89999999999999999999999999 67999999999999999998889999999999999999999888754
No 2
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=100.00 E-value=5.1e-43 Score=316.34 Aligned_cols=304 Identities=31% Similarity=0.501 Sum_probs=266.9
Q ss_pred CccccCCCCChHHHHHHHHhcCCeeeeeecceeEEEEEEeccccHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHh
Q 020661 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEV 80 (323)
Q Consensus 1 ~~f~Gt~~~~~~~~~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~~~~~~~~~~~~~~~~ 80 (323)
|+|+||.+++..++.+.++..|+.+|++|++|.|.|++++.+++++.+|+++++++.+|.|++++++++|..+++|+++.
T Consensus 66 m~fkgt~~~~~~~i~~~~~~~G~~~na~ts~d~t~y~~~~l~~~~~~~l~llad~l~~p~f~~~~~e~Ek~vil~ei~~~ 145 (438)
T COG0612 66 MAFKGTTGLPSAELAEAFEKLGGQLNAFTSFDYTVYYLSVLPDNLDKALDLLADILLNPTFDEEEVEREKGVILEEIRMR 145 (438)
T ss_pred HHccCCCCCChHHHHHHHHHhcCeeeccccchhhhhhhhhchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence 78999999888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCChHHHHHHHHHHHhcCCCCCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHHHHhcCCCC
Q 020661 81 EGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSA 160 (323)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~~~~~~~~~ 160 (323)
..+|...+...+...+|+++||+++++|+.+.|.+++.++|++||++||+|+||+++|+||++++++.++++++|+.|+.
T Consensus 146 ~d~p~~~~~~~l~~~~~~~~p~~~~~~G~~e~I~~it~~dl~~f~~k~Y~p~n~~l~vvGdi~~~~v~~~~~~~f~~~~~ 225 (438)
T COG0612 146 QDDPDDLAFERLLEALYGNHPLGRPILGTEESIEAITREDLKDFYQKWYQPDNMVLVVVGDVDAEEVVELIEKYFGDLPG 225 (438)
T ss_pred ccCchHHHHHHHHHHhhccCCCCCCCCCCHHHHHhCCHHHHHHHHHHhcCcCceEEEEecCCCHHHHHHHHHHHHccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCcccccccCCCccccCCceee-e---cCCCCceEEEEEeecCCCCCc-chHHHHHHHHHcCCCCCCCCCCCCcccHHH
Q 020661 161 DPTTASQLVANEPAIFTGSEVRI-I---DDDIPLAQFAVAFAGASWTDP-DSIALMVMQAMLGSWNKNSVGGKHMGSELA 235 (323)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~v~~~~~~~~~~~~-~~~~~~vl~~~l~~~~~~~~~~~~~~s~L~ 235 (323)
..+....+ ..+...+..... . .+...+.++.++++.+...++ +++++.+++.++|+ ++.||||
T Consensus 226 -~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~llgg---------~~~SrLf 293 (438)
T COG0612 226 -AAPPPKIP--PEPPLGPERVVRVNDPEQPDLEQAWLALGYPGPDYDSPDDYAALLLLNGLLGG---------GFSSRLF 293 (438)
T ss_pred -cCCCCCCC--CccccCCCceEEecCCCCchhhhhhhhccccCcCcCcchhhHHHHHHHHHhCC---------CcchHHH
Confidence 22222111 122222222222 2 244567788888888877665 88999999999985 4789999
Q ss_pred HHhcc-ccceehhcccccCCCCcccEEEEeecCcccHHHHHHHHHHHHHHhcc-C---CCHHHHHHHHHHHHHccCCCCC
Q 020661 236 QRVGI-NEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAY-R---VSEADVTRARNQVAASLPTYPG 310 (323)
Q Consensus 236 ~~lre-~g~~y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~---is~~el~~ak~~~~~~~~~~~~ 310 (323)
+.+|+ +|++|++++....+.+.+.+.+++.+.+.+.+.+...+.++++.+.+ . +++++++.+|+.+...+....+
T Consensus 294 ~~~re~~glay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~k~~~~~~~~~~~~ 373 (438)
T COG0612 294 QELREKRGLAYSVSSFSDFLSDSGLFSIYAGTAPENPEKTAELVEEILKALKKGLKGPFTEEELDAAKQLLIGLLLLSLD 373 (438)
T ss_pred HHHHHhcCceeeeccccccccccCCceEEEEecCCChhhHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhhccC
Confidence 99996 89999999877777888999999999988888888888888877777 4 9999999999999999999998
Q ss_pred CCCccc
Q 020661 311 YLDICL 316 (323)
Q Consensus 311 ~~~~~~ 316 (323)
++..+.
T Consensus 374 s~~~~~ 379 (438)
T COG0612 374 SPSSIA 379 (438)
T ss_pred CHHHHH
Confidence 876543
No 3
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9e-43 Score=288.33 Aligned_cols=313 Identities=32% Similarity=0.496 Sum_probs=287.5
Q ss_pred CccccCCCCChHHHHHHHHhcCCeeeeeecceeEEEEEEeccccHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHh
Q 020661 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEV 80 (323)
Q Consensus 1 ~~f~Gt~~~~~~~~~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~~~~~~~~~~~~~~~~ 80 (323)
|+|..|.+++..++...|+++||.++|++++|.+.|.+++.+++++.++++|++.+.+|.|++++++.+|..+.-|+...
T Consensus 73 LAF~ST~~~~~~ei~~~LE~~GGn~~cqsSRetm~Yaas~~~~~v~sm~~lLadtV~~P~~~d~ev~~~~~~v~~E~~el 152 (472)
T KOG2067|consen 73 LAFKSTERFSSKEILAELEKLGGNCDCQSSRETMMYAASADSDGVDSMVELLADTVLNPKFTDQEVEEARRAVKYEIEEL 152 (472)
T ss_pred HhhccccCCcHHHHHHHHHHhCCcccccccHhhhHHHHHhhhcccHHHHHHHHHHHhcccccHHHHHHHHHhhhhecccc
Confidence 68999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCChHHHHHHHHHHHhcCCCCCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHHHHhcCCCC
Q 020661 81 EGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSA 160 (323)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~~~~~~~~~ 160 (323)
...|.....++++.+.|.+..++.+.+.+.+.+++|+.+.|.+|.+.+|+|.+|++..|| ++++++.+.++++++.+|+
T Consensus 153 ~~~Pe~lL~e~iH~Aay~~ntlg~pl~cp~~~i~~I~~~~l~~yl~~~ytp~rmVlA~vG-V~heelv~~~~~~~~~~~s 231 (472)
T KOG2067|consen 153 WMRPEPLLTEMIHSAAYSGNTLGLPLLCPEENIDKINREVLEEYLKYFYTPERMVLAGVG-VEHEELVEIAEKLLGDLPS 231 (472)
T ss_pred ccCchhhHHHHHHHHHhccCcccccccCChhhhhhhhHHHHHHHHHhcCChhheEeeecC-CCHHHHHHHHHHHhccCCc
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999999999999988
Q ss_pred CCCcccccccCCCccccCCceeeecC------CCCceEEEEEeecCCCCCcchHHHHHHHHHcCCCCCCC--CCCCCccc
Q 020661 161 DPTTASQLVANEPAIFTGSEVRIIDD------DIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNS--VGGKHMGS 232 (323)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~vl~~~l~~~~~~~--~~~~~~~s 232 (323)
...++... ...+++++...+..+ ...-+++.++|-+++++++|..++.+|+-++||+.+|+ |+|+||.|
T Consensus 232 ~~~p~i~~---~~aQYtGG~~~~~~d~~~~~~g~EltHv~lg~Eg~~~~deD~v~~avLq~lmGGGGSFSAGGPGKGMyS 308 (472)
T KOG2067|consen 232 TKVPPIDE---SKAQYTGGELKIDTDAPQVTGGPELTHVVLGFEGCSWNDEDFVALAVLQMLMGGGGSFSAGGPGKGMYS 308 (472)
T ss_pred cCCCCccc---chhhccccccccCCCCccccCccceeeeeEeeccCCCCChhHHHHHHHHHHhcCCcccCCCCCCcchHH
Confidence 54443322 456777775544321 12567899999999999999999999999999999999 89999999
Q ss_pred HHHHHhc-cccceehhcccccCCCCcccEEEEeecCcccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCCCCCC
Q 020661 233 ELAQRVG-INEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQVAASLPTYPGY 311 (323)
Q Consensus 233 ~L~~~lr-e~g~~y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~is~~el~~ak~~~~~~~~~~~~~ 311 (323)
|||.++- +-.+.|++-|++..|++.|.|.|+..+.|+.+.+++..+.+++-.+..+++.+|+++||.+++..++..+|+
T Consensus 309 rLY~~vLNry~wv~sctAfnhsy~DtGlfgi~~s~~P~~a~~aveli~~e~~~~~~~v~~~el~RAK~qlkS~LlMNLES 388 (472)
T KOG2067|consen 309 RLYLNVLNRYHWVYSCTAFNHSYSDTGLFGIYASAPPQAANDAVELIAKEMINMAGGVTQEELERAKTQLKSMLLMNLES 388 (472)
T ss_pred HHHHHHHhhhHHHHHhhhhhccccCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcccc
Confidence 9998887 688999999999999999999999999999999999999999999877999999999999999999999988
Q ss_pred CCcccc
Q 020661 312 LDICLL 317 (323)
Q Consensus 312 ~~~~~~ 317 (323)
--..+.
T Consensus 389 R~V~~E 394 (472)
T KOG2067|consen 389 RPVAFE 394 (472)
T ss_pred cchhHH
Confidence 655443
No 4
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=100.00 E-value=8.2e-41 Score=308.38 Aligned_cols=288 Identities=18% Similarity=0.224 Sum_probs=244.4
Q ss_pred CccccCCCCChH-HHHHHHHhcCCeeeeeecceeEEEEEEeccccHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHH
Q 020661 1 MIFKGTEKRTAR-DLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEE 79 (323)
Q Consensus 1 ~~f~Gt~~~~~~-~~~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~~~~~~~~~~~~~~~ 79 (323)
|+|+||++++.. ++.+.++.+|+.+|++|+.|+|.|++++++++++.+|+++++++.+|.|+++++++||+++++|++.
T Consensus 49 MLFkGT~~~~~~~~i~~~le~lGG~lNA~Ts~d~T~y~~~v~~~~l~~aL~lLaD~l~~P~f~eeeierEr~vvl~Ei~~ 128 (696)
T TIGR02110 49 LLFLGGERFQGDDRLMPWVQRQGGQVNATTLERTTAFFFELPAAALAAGLARLCDMLARPLLTAEDQQREREVLEAEYIA 128 (696)
T ss_pred HHhcCCCCCCcHHHHHHHHHHhCCeEEEEEcCCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 799999999975 7999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCChHHHHHHHHHHHhcCCCCCCCCCCCCccccccCC---HHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHHHHhc
Q 020661 80 VEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTIT---KEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFT 156 (323)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~---~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~~~~~ 156 (323)
..++|...+.+.+...+|++|||+++.+|+.++|+.++ .++|++||+++|.|+||+++|+||++.++++++++++|+
T Consensus 129 ~~ddp~~~~~~~l~~~l~~~HPy~~~~iGt~esL~~it~~t~edL~~F~~~~Y~p~NmvLvIvGdvs~eel~~l~e~~f~ 208 (696)
T TIGR02110 129 WQNDADTLREAALLDALQAGHPLRRFHAGSRDSLALPNTAFQQALRDFHRRHYQAGNMQLWLQGPQSLDELEQLAARFGA 208 (696)
T ss_pred HhcCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHhCcccchHHHHHHHHHHhcchhcEEEEEEeCCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999876 999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccccCCCccccCCceeeecCCCCceEEEEEeecCCCCCcchHHHHHHHHHcCCCCCCCCCCCCcccHHHH
Q 020661 157 KLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQ 236 (323)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~~l~~~~~~~~~~~~~~s~L~~ 236 (323)
.|+.+..+.... +++........+.....++.++.+.++.++..+++ ++.+++.+|++ +++++|++
T Consensus 209 ~~~~~~~~~~~~---~~p~~~~~~~~~~~~~~~q~~l~~~~p~~~~~d~~--al~lL~~iLg~---------g~sSrL~~ 274 (696)
T TIGR02110 209 SLAAGGECAQAP---PAPLLRFDRLTLAGGSEPRLWLLFALAGLPATARD--NVTLLCEFLQD---------EAPGGLLA 274 (696)
T ss_pred CCCCCCCCCCCC---CCCCCCCceeEEEecCcceEEEEEeecCCCCCChH--HHHHHHHHhCC---------CcchHHHH
Confidence 997654332211 12222222233333344566666666665554444 57899999985 46899999
Q ss_pred HhccccceehhcccccCCCCcc--cEEEEeec---CcccHHHHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHH
Q 020661 237 RVGINEIAESMMAFNTNYKDTG--LFGVYAVA---KPDCLDDLAYAIMYETTKLAY---RVSEADVTRARNQVAA 303 (323)
Q Consensus 237 ~lre~g~~y~~~~~~~~~~~~~--~~~i~~~~---~~~~~~~~~~~~~~~~~~l~~---~is~~el~~ak~~~~~ 303 (323)
+||++|++|++++.+ .+.+.+ .|.|++.+ .+++.+++++.+.++|+++++ +++.+|++++|.+-..
T Consensus 275 ~LRe~GLaysV~s~~-~~~~~g~~lf~I~~~lt~~~~~~~~~v~~~i~~~L~~L~~~~~~~~~eel~rlk~~~~~ 348 (696)
T TIGR02110 275 QLRERGLAESVAATW-LYQDAGQALLALEFSARCISAAAAQQIEQLLTQWLGALAEQTWAEQLEHYAQLAQRRFQ 348 (696)
T ss_pred HHHHCCCEEEEEEec-cccCCCCcEEEEEEEEcCCCccCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhhhh
Confidence 999999999998854 344444 88888887 246899999999999999966 6899999999988544
No 5
>PRK15101 protease3; Provisional
Probab=100.00 E-value=4.4e-37 Score=302.54 Aligned_cols=298 Identities=16% Similarity=0.183 Sum_probs=250.4
Q ss_pred CccccCCCCC-hHHHHHHHHhcCCeeeeeecceeEEEEEEeccccHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHH
Q 020661 1 MIFKGTEKRT-ARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEE 79 (323)
Q Consensus 1 ~~f~Gt~~~~-~~~~~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~~~~~~~~~~~~~~~ 79 (323)
|||+||++++ ..++.+.++.+||.+|++|+.++|.|++++++++++.+|+++++++.+|.|++++++++|..+.+|++.
T Consensus 93 mlf~GT~~~p~~~~~~~~l~~~Gg~~NA~T~~d~T~y~~~~~~~~l~~aL~~~ad~~~~P~f~~~~~erE~~~v~~E~~~ 172 (961)
T PRK15101 93 MVLMGSKKYPQPDSLAEFLKKHGGSHNASTASYRTAFYLEVENDALPPAVDRLADAIAEPLLDPKNADRERNAVNAELTM 172 (961)
T ss_pred HHhcCCccCCCcchHHHHHHHhCCCccceECCCceEEEEEcCHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 7999999996 678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCChHHHHHHHHHHHhcCCCCCCCCCCCCccccccC----CHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHHHHh
Q 020661 80 VEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTI----TKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLF 155 (323)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~----~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~~~~ 155 (323)
...+|..++.+.+...+|++|||+++..|+.+.|..+ +.++|++||+++|.|+||+++|+||++++++.++++++|
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etl~~~~~~~~~~~L~~f~~~~Y~p~nm~lvv~G~~~~~~l~~~~~~~F 252 (961)
T PRK15101 173 ARSRDGMRMAQVSAETINPAHPGSRFSGGNLETLSDKPGSKLQDALVDFYQRYYSANLMKAVIYSNQPLPELAKLAADTF 252 (961)
T ss_pred hcCCHHHHHHHHHHhhCCCCCCcccCCCCCHHHhhcCCchHHHHHHHHHHHHhCcccceEEEEEcCCCHHHHHHHHHHHh
Confidence 8889999999999999999999999999999999997 699999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccccccCCCcc-ccCCceeeecCCCCceEEEEEeecCCCCCc-chHHHHHHHHHcCCCCCCCCCCCCcccH
Q 020661 156 TKLSADPTTASQLVANEPAI-FTGSEVRIIDDDIPLAQFAVAFAGASWTDP-DSIALMVMQAMLGSWNKNSVGGKHMGSE 233 (323)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~vl~~~l~~~~~~~~~~~~~~s~ 233 (323)
+.||....+.+.... ++.. ...+......+..++..+.+.|+.++..+. +.....+++.+|+++ ..+.
T Consensus 253 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~l~~~~p~~~~~~~~~~~~~l~~ll~~~---------~~g~ 322 (961)
T PRK15101 253 GRVPNKNASVPEITV-PVVTDAQKGIIIHYVPAQPRKVLRVEFRIDNNSAKFRSKTDEYISYLIGNR---------SPGT 322 (961)
T ss_pred ccCCCCCCCCCCCCC-CCCCHHHcCeEEEEEECCCCcEEEEEEecCCcHHHHhhCHHHHHHHHhcCC---------CCCc
Confidence 999875432221111 1111 111222222334466788888988765322 333567889999853 2456
Q ss_pred HHHHhccccceehhcccccCC--CCcccEEEEeecCc---ccHHHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHccCC
Q 020661 234 LAQRVGINEIAESMMAFNTNY--KDTGLFGVYAVAKP---DCLDDLAYAIMYETTKLAY-RVSEADVTRARNQVAASLPT 307 (323)
Q Consensus 234 L~~~lre~g~~y~~~~~~~~~--~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~l~~-~is~~el~~ak~~~~~~~~~ 307 (323)
|++.|+++|++|++++..... .+.+.|.+++.+.+ ++.+++++.+.++|+++++ ++++++++++|+.+..++..
T Consensus 323 l~~~L~~~gla~~v~s~~~~~~~~~~g~f~i~~~~~~~~~~~~~~v~~~i~~~i~~l~~~g~~~~el~~~k~~~~~~~~~ 402 (961)
T PRK15101 323 LSDWLQKQGLAEGISAGADPMVDRNSGVFAISVSLTDKGLAQRDQVVAAIFSYLNLLREKGIDKSYFDELAHVLDLDFRY 402 (961)
T ss_pred HHHHHHHcCccceeeeccccccCCCceEEEEEEEcChHHHHhHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhccccC
Confidence 888888899999998865533 55789999999887 4789999999999999999 99999999999999988855
Q ss_pred C
Q 020661 308 Y 308 (323)
Q Consensus 308 ~ 308 (323)
.
T Consensus 403 ~ 403 (961)
T PRK15101 403 P 403 (961)
T ss_pred C
Confidence 4
No 6
>PTZ00432 falcilysin; Provisional
Probab=100.00 E-value=6.7e-33 Score=271.12 Aligned_cols=297 Identities=16% Similarity=0.166 Sum_probs=239.0
Q ss_pred CccccCCCCChHHHHHHHHhcC--CeeeeeecceeEEEEEEeccc-cHHHHHHHHHHHhhCCCCChHHH--H--------
Q 020661 1 MIFKGTEKRTARDLEEEIENMG--GHLNAYTSREQTTYYAKVLDK-DVNNALDILADILQNSTFDQARI--T-------- 67 (323)
Q Consensus 1 ~~f~Gt~~~~~~~~~~~l~~~g--~~~~~~t~~~~~~~~~~~~~~-~l~~~l~ll~~~l~~p~~~~~~~--~-------- 67 (323)
|+|+||++++..++...+++.| +.+|++|+.|+|.|.+++.++ ++..+++++.+.+.+|.|+++++ .
T Consensus 139 ~~f~GS~k~p~~~~~~~l~~~gl~~~lNA~T~~D~T~Y~~~~~~e~d~~~~ldv~~d~v~~P~~~~~~~~f~qEgwh~E~ 218 (1119)
T PTZ00432 139 SVLSGSKKYNYKDSFSLLVQGGFNSFLNAYTFKDRTSYLFASTNEKDFYNTADVYMDSVFQPNILEDKDIFKQEGWHYKV 218 (1119)
T ss_pred HHhCCCCCCCcccHHHHHHhcCcCCCccccCCCCceEEEeccCCHHHHHHHHHHHHHHHhCcCcccccchhhhhhhhccc
Confidence 6899999999999999998866 779999999999999999885 69999999999999999988753 2
Q ss_pred -HH--------------------HHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCCCCCCCCCccccccCCHHHHHHHHH
Q 020661 68 -RE--------------------RDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIH 126 (323)
Q Consensus 68 -~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~l~~~~~ 126 (323)
++ +.+|.+|++...++|..++.+.+...+| ++||+++..|+++.|..++.+++++||+
T Consensus 219 ~~~~~~~~~~~e~~~~~~~~l~~kgVV~~Emk~~~~~p~~~~~~~~~~~lf-~~pY~~~~~G~~~~I~~lt~e~l~~Fh~ 297 (1119)
T PTZ00432 219 TKLKDDEKNADELGNVHDRHVSYSGIVYSEMKKRFSDPLSFGYSVIYQNLF-SNVYKYDSGGDPKDIVELTYEELVEFYK 297 (1119)
T ss_pred cccccccccccccccccccccchhhHHHHHHHHhhCCHHHHHHHHHHHHHh-CCCCCCCCCCChHhhccCCHHHHHHHHH
Confidence 21 7789999999999999999999999999 9999999999999999999999999999
Q ss_pred hhCCCCceEEEEEcCCCHHHHHHHHHHHhcCCCCCCCcc----cccccCC-C--ccccCCc-eee--ecCCCCceEEEEE
Q 020661 127 THYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSADPTTA----SQLVANE-P--AIFTGSE-VRI--IDDDIPLAQFAVA 196 (323)
Q Consensus 127 ~~~~~~~~~l~i~G~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~-~--~~~~~~~-~~~--~~~~~~~~~v~~~ 196 (323)
++|.|+||+++++||++++++.++++++|+.+|...... ++.+..+ + ....++. +.. ...+..+..+.++
T Consensus 298 ~~Y~P~N~~l~v~Gdid~~~~l~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~e~~~l~~~ 377 (1119)
T PTZ00432 298 TYYGPKTATVYFYGPNDVTERLEFVDNYLTKHPKTGQLSHTAYREDADENLLYEEYKDKPKHVKKKFSSHSEEEENLMSV 377 (1119)
T ss_pred HhcCccceEEEEEcCCCHHHHHHHHHHHHhhcccccccccccccccccccccccccccCCeEEEeccCCCccccccEEEE
Confidence 999999999999999999999999999998887542110 0000000 0 1112221 111 1222334555554
Q ss_pred -eecCCC-----------CC-cchHHHHHHHHHcCCCCCCCCCCCCcccHHHHHhccccceehh-cccccCCCCcccEEE
Q 020661 197 -FAGASW-----------TD-PDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESM-MAFNTNYKDTGLFGV 262 (323)
Q Consensus 197 -~~~~~~-----------~~-~~~~~~~vl~~~l~~~~~~~~~~~~~~s~L~~~lre~g~~y~~-~~~~~~~~~~~~~~i 262 (323)
|+.++. .+ +++.++.|++.+|++ +.+|+|++.||+.|++|++ ++.+......+.|.+
T Consensus 378 ~w~~~p~~~~~~~~~~~~~d~~~~~AL~VLs~lLgg---------g~sS~L~q~LrE~GLa~svv~~~~~~~~~~~~f~I 448 (1119)
T PTZ00432 378 SWLLNPKHNGSKDYDKSLIDPVDYLALLVLNYLLLG---------TPESVLYKALIDSGLGKKVVGSGLDDYFKQSIFSI 448 (1119)
T ss_pred EEEcCCccccccccccccCCHHHHHHHHHHHHHHcC---------CCccHHHHHHHhcCCCcCCCcCcccCCCCceEEEE
Confidence 976321 23 578999999999985 4699999999999999995 445555677788888
Q ss_pred Eee-cCc-------ccHHHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHccCC
Q 020661 263 YAV-AKP-------DCLDDLAYAIMYETTKLAY-RVSEADVTRARNQVAASLPT 307 (323)
Q Consensus 263 ~~~-~~~-------~~~~~~~~~~~~~~~~l~~-~is~~el~~ak~~~~~~~~~ 307 (323)
.+. +.. +++.++.+.+.++|+++.+ ||+++++++++.++..++..
T Consensus 449 ~l~g~~~~~~~~~~~~~~ev~~~I~~~L~~l~~eGi~~eele~a~~qlef~~rE 502 (1119)
T PTZ00432 449 GLKGIKETNEKRKDKVHYTFEKVVLNALTKVVTEGFNKSAVEASLNNIEFVMKE 502 (1119)
T ss_pred EEEcCChHhccchhhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhh
Confidence 875 332 3477999999999999999 99999999999999887764
No 7
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.2e-26 Score=213.62 Aligned_cols=304 Identities=17% Similarity=0.202 Sum_probs=251.1
Q ss_pred CccccCCCCC-hHHHHHHHHhcCCeeeeeecceeEEEEEEeccccHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHH
Q 020661 1 MIFKGTEKRT-ARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEE 79 (323)
Q Consensus 1 ~~f~Gt~~~~-~~~~~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~~~~~~~~~~~~~~~ 79 (323)
|+|+|+++|+ ...+..+|.++||..||+|..+.|.|.+++.++.++.+|+.+++.+..|.|+++..++|+..|-+|+.+
T Consensus 73 mlfmGseKYP~~~~f~~fLskhgGs~NA~T~~~~T~fyFeV~~~al~~ALDrFa~ff~~PLf~~e~~dRE~~AV~sE~~~ 152 (937)
T COG1025 73 MLFMGSEKYPDEGGFSEFLSKHGGSHNASTAGERTAFYFEVENDALEGALDRFADFFIEPLFNKEALDRERNAVNSEFTM 152 (937)
T ss_pred HHHhcCccCCCccchHHHHHHcCCccccccCCCceeEEEEecHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHhc
Confidence 7899999996 666999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCChHHHHHHHHHHHhcCCCCCCCCCCCCcccccc----CCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHHHHh
Q 020661 80 VEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKT----ITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLF 155 (323)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~----~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~~~~ 155 (323)
...+...++++.....+.++||+++...|+.++|.. ...+++++||+++|.++||++||.|+-+.+++.+++.++|
T Consensus 153 ~~~~D~~R~~~~~~~~~np~HP~srFs~GN~~TL~~~p~~~v~~el~ef~~~~YSa~~M~lviyg~q~ldeL~~~a~~~F 232 (937)
T COG1025 153 NLTSDGWRMYQVQALTANPGHPLSKFSTGNLETLSDKPGLVVQQELKEFHEKHYSANNMKLVIYGNQPLDELAKLAADLF 232 (937)
T ss_pred CcCchHHHHHHHHHhhcCCCCCccccCCCChhhhccCCCchHHHHHHHHHHHhcChhheEEEEecCCCHHHHHHHHHHHh
Confidence 988889999999999999999999999999999988 5679999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccccccCCCccccCCceeeecCCCCceEEEEEeecCCCCCcc-hHHHHHHHHHcCCCCCCCCCCCCcccHH
Q 020661 156 TKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPD-SIALMVMQAMLGSWNKNSVGGKHMGSEL 234 (323)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~vl~~~l~~~~~~~~~~~~~~s~L 234 (323)
+.+|.+....++.+...-.......+..+.+..+...+.+.|+.+...+.. .-....++.+||.-+ ..-|
T Consensus 233 ~~Ipn~~~~~p~~p~p~~~d~~t~~ii~i~p~~~~~~L~i~f~i~~~~~~~~~~~~~~~s~Lig~es---------~gsL 303 (937)
T COG1025 233 GDIPNRARKIPPIPVPVVTDEQTGKIIHIVPAKPRPRLRIYFPIDDNSAKFRSKPDEYLSHLIGNES---------PGSL 303 (937)
T ss_pred CcCCCCCCCCCCCCCCCCChHHhCceEEeccCCCCceEEEEEEcCCcccccccCCHHHHHHHhccCC---------CchH
Confidence 999976554443321011111223333344445677888999988755432 455678888887532 3347
Q ss_pred HHHhccccceehhcccccCCC-CcccEEEEeecCc---ccHHHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHccCCCC
Q 020661 235 AQRVGINEIAESMMAFNTNYK-DTGLFGVYAVAKP---DCLDDLAYAIMYETTKLAY-RVSEADVTRARNQVAASLPTYP 309 (323)
Q Consensus 235 ~~~lre~g~~y~~~~~~~~~~-~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~l~~-~is~~el~~ak~~~~~~~~~~~ 309 (323)
-..|.++|++-++.+...... +.+.|.|...-.. ++.++++..+++.++-+.. ++....+++..+-.-..+....
T Consensus 304 ~~~Lk~~Glit~l~a~~~~~~~n~~~f~is~~LT~~Gl~~~~~VI~~~F~yl~~l~~~~~~~~~f~Elq~v~~l~f~y~~ 383 (937)
T COG1025 304 LAWLKKQGLITELSAGLDPISGNYGVFAISYELTDKGLAHYDRVIALTFQYLNLLREKGIPKYTFDELQNVLDLDFRYPS 383 (937)
T ss_pred HHHHHhccchhhhccccccccCCcceEEEEeehhhcchhhHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhcccc
Confidence 788888999999888665554 6677888766433 8899999999999999998 9999999988887777777666
Q ss_pred CCCC
Q 020661 310 GYLD 313 (323)
Q Consensus 310 ~~~~ 313 (323)
.+..
T Consensus 384 ~t~~ 387 (937)
T COG1025 384 KTRP 387 (937)
T ss_pred cCCh
Confidence 5544
No 8
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4e-26 Score=213.65 Aligned_cols=301 Identities=17% Similarity=0.173 Sum_probs=245.1
Q ss_pred CccccCCCCC-hHHHHHHHHhcCCeeeeeecceeEEEEEEeccccHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHH
Q 020661 1 MIFKGTEKRT-ARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEE 79 (323)
Q Consensus 1 ~~f~Gt~~~~-~~~~~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~~~~~~~~~~~~~~~ 79 (323)
|+|+||++|+ .+++..++.++||..||+|+.++|.|++.+.+++++.+|+.+++.+.+|.|+++..+||+..|.+|...
T Consensus 77 MlFmGS~KYP~En~y~~~lsk~gGssNA~T~~e~T~y~F~V~~~~l~~ALDrFaqFf~~Plf~~~a~eREv~AVdSE~~~ 156 (974)
T KOG0959|consen 77 MLFMGSEKYPDENEYSKFLSKNGGSSNAYTDSEHTNYYFDVQHDHLEGALDRFAQFFSDPLFNKSATEREVGAVDSEHEK 156 (974)
T ss_pred HHhhccccCCCcchhHHHHHhcCCccccccccccceEEEecchHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHHHh
Confidence 7999999995 777999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCChHHHHHHHHHHHhcCCCCCCCCCCCCccccccCC-----HHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHHHH
Q 020661 80 VEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTIT-----KEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKL 154 (323)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~-----~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~~~ 154 (323)
..++...+..+.+....-++||+++..+|..++|.... .+.|.+||++||.+++|++||+|..+.+.+..++.+.
T Consensus 157 nl~~D~wr~~ql~~~l~~~~hp~~kF~tGN~~tL~~~p~~~~~r~~L~kF~k~~Yssn~M~l~i~G~eslD~Le~lv~~~ 236 (974)
T KOG0959|consen 157 NLNSDGWRFDQLLRSLSNPGHPYSKFSTGNKKTLLEGPREIDLRDELLKFYKNWYSSNIMTLVIVGKESLDVLESLVTRL 236 (974)
T ss_pred ccCcchhHHHHHHHHhcCCCCcchhccccchhhhhhccccchHHHHHHHHHHhhcccccceEEEEcCCChhHHHHHHHHH
Confidence 99998999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred hcCCCCCCCcccccccCCCcc--ccCCceeeecCCCCceEEEEEeecCCCCC-cchHHHHHHHHHcCCCCCCCCCCCCcc
Q 020661 155 FTKLSADPTTASQLVANEPAI--FTGSEVRIIDDDIPLAQFAVAFAGASWTD-PDSIALMVMQAMLGSWNKNSVGGKHMG 231 (323)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~vl~~~l~~~~~~~~~~~~~~ 231 (323)
|+.++....+.+.++. .|.. ..+..+.+. +-.....+.+.|+.|+..+ -+....+.++.++|.- | .
T Consensus 237 F~~i~N~~~~~p~f~~-~p~~~e~~~~~~~v~-pik~~~~l~is~~~p~~~~~y~~kP~~y~~hLighe----g-----~ 305 (974)
T KOG0959|consen 237 FDEISNKKKPRPVFPE-PPFLPEELKKLVRVV-PIKDGRSLMISWPVPPLNHHYKSKPLRYLSHLIGHE----G-----P 305 (974)
T ss_pred cccccccCCCCCcccC-CCCChHHhCcEEEEE-eccccceEEEEEecCCcccccccCcHHHHHHHhccC----C-----c
Confidence 9999887666654443 1111 122223332 3335567888899887543 4556667888888752 1 3
Q ss_pred cHHHHHhccccceehhccccc-CCCCcccEEEEeecCc---ccHHHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHccC
Q 020661 232 SELAQRVGINEIAESMMAFNT-NYKDTGLFGVYAVAKP---DCLDDLAYAIMYETTKLAY-RVSEADVTRARNQVAASLP 306 (323)
Q Consensus 232 s~L~~~lre~g~~y~~~~~~~-~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~l~~-~is~~el~~ak~~~~~~~~ 306 (323)
.-|...|+..|++-+..+... ...+.+.|.+...-.. +++++++..+.+.++-+.+ +.-..-+++....-...+.
T Consensus 306 GSL~~~Lk~~gw~~sl~a~~~~~as~~~~f~v~idLtd~G~e~~~~ii~~~f~yi~~l~~~~~~~~i~~E~~~~~~~~Fr 385 (974)
T KOG0959|consen 306 GSLLSYLKRLGWATSLEAGIPEFASGYSFFNVSIDLTDEGLEHVDEIIGLVFNYIKLLQSAGPEKWIFKELQLISEVKFR 385 (974)
T ss_pred chHHHHHHHhhchheeecCCCccccccceEEEEEEeccccchhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhhhhhee
Confidence 448899999999988777554 3356677777766544 8889999999999998888 6665556665555555555
Q ss_pred CCCCCC
Q 020661 307 TYPGYL 312 (323)
Q Consensus 307 ~~~~~~ 312 (323)
+....+
T Consensus 386 f~~k~~ 391 (974)
T KOG0959|consen 386 FQDKEP 391 (974)
T ss_pred ecccCC
Confidence 544433
No 9
>PRK15101 protease3; Provisional
Probab=99.94 E-value=2.2e-25 Score=219.85 Aligned_cols=287 Identities=11% Similarity=0.079 Sum_probs=208.6
Q ss_pred HHHHHHHhcCCeeeeeecceeEEEEEEeccccHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHhhC-ChHHHHHHH
Q 020661 13 DLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEVEG-QTEEVIFDH 91 (323)
Q Consensus 13 ~~~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 91 (323)
++....+..|..++.+ +.+++.+++++++++++.+|+++.+.+.+|.|++++|+++|+.+++++++... .+...+..
T Consensus 582 e~~y~a~~aG~~~~~~-~~~g~~i~v~g~s~~l~~ll~~l~d~l~~~~~~~~~fe~~k~~~~~~l~~~~~~~~~~~~~~- 659 (961)
T PRK15101 582 QLSNQASVGGISFSTN-ANNGLMVNANGYTQRLPQLLQALLEGYFSFTPTEEQLAQAKSWYREQLDSAEKGKAYEQAIM- 659 (961)
T ss_pred HHhchHHhcCcEEEEc-cCCCEEEEEEecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcccCcHHHHHH-
Confidence 3444444568889988 78999999999999999999999999999999999999999999999988543 22222221
Q ss_pred HHHHhcCCCCCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHHHHhcCCCCCCCcccccccC
Q 020661 92 LHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSADPTTASQLVAN 171 (323)
Q Consensus 92 ~~~~~~~~~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 171 (323)
....+..+||+.. .++.+.|++++.+++++|++++|.+.+++++|+||++.+++.++++++++.++..+.......
T Consensus 660 -~~~~~~~~py~~~-~~~~~~l~~it~edl~~f~~~~~~~~~~~~~v~GNi~~~ea~~l~~~~~~~l~~~~~~~~~~~-- 735 (961)
T PRK15101 660 -PAQMLSQVPYFER-DERRKLLPSITLKDVLAYRDALLSGATPEFLVVGNLTEEQVTTLARDVQKQLGADGTEWWRGK-- 735 (961)
T ss_pred -HHHHHhcCCCCCH-HHHHHHHhcCCHHHHHHHHHHHHHhceEEEEEEcCCCHHHHHHHHHHHHHHhccCCccccccc--
Confidence 1134568888864 568899999999999999999999999999999999999999999988887765322110000
Q ss_pred CCccccCCce-eeecCCCCceEEEEEeecCCCCCcchHHHHHHHHHcCCCCCCCCCCCCcccHHHHHhcc-ccceehhcc
Q 020661 172 EPAIFTGSEV-RIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGI-NEIAESMMA 249 (323)
Q Consensus 172 ~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~~l~~~~~~~~~~~~~~s~L~~~lre-~g~~y~~~~ 249 (323)
......+... ........++.+.+.+..++.+ ..+..+++.+|++ ++++|||+.||+ +|++|++++
T Consensus 736 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~v~~~lLg~---------~~ssrlf~~LRtk~qLgY~V~s 803 (961)
T PRK15101 736 DVVVDKKQSVNFEKAGSSTDSALAAVYVPTGYD---EYQSSAYSSLLGQ---------IIQPWFYNQLRTEEQLGYAVFA 803 (961)
T ss_pred ceEeCCCCeEEEecCCCCCCCeEEEEEEeCCCC---CHHHHHHHHHHHH---------HHhHHHHHHHHHHhhhceEEEE
Confidence 0000011111 1122233445555555443332 3566788888873 578999999995 999999999
Q ss_pred cccCCCCcccEEEEeecCc---ccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCCCCCCCCcccc
Q 020661 250 FNTNYKDTGLFGVYAVAKP---DCLDDLAYAIMYETTKLAYRVSEADVTRARNQVAASLPTYPGYLDICLL 317 (323)
Q Consensus 250 ~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~l~~~is~~el~~ak~~~~~~~~~~~~~~~~~~~ 317 (323)
......+.+.+.+.+++.. +.+.+.+..+.+++....+++|++||+++|+++++++....+++..+..
T Consensus 804 ~~~~~~~~~~~~~~vqs~~~~~~~l~~~i~~f~~~~~~~l~~lt~eE~~~~k~~l~~~~~~~~~sl~~~a~ 874 (961)
T PRK15101 804 FPMSVGRQWGMGFLLQSNDKQPAYLWQRYQAFFPQAEAKLRAMKPEEFAQYQQALINQLLQAPQTLGEEAS 874 (961)
T ss_pred EeeccCCeeeEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 8877766666777776654 4444445555444322123899999999999999999999999766543
No 10
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=99.93 E-value=5.2e-25 Score=175.75 Aligned_cols=178 Identities=28% Similarity=0.441 Sum_probs=146.1
Q ss_pred cCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHHHHhcCCCCCCC---cccccccCCCccccCCceeeecCCCCce
Q 020661 115 TITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSADPT---TASQLVANEPAIFTGSEVRIIDDDIPLA 191 (323)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (323)
+++.++|++||++||.|+||+++++||++.+++.++++++|+.++.... .................+.....+.++.
T Consensus 1 ~it~e~l~~f~~~~y~p~n~~l~i~Gd~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (184)
T PF05193_consen 1 NITLEDLRAFYKKFYRPSNMTLVIVGDIDPDELEKLIEKYFGSLPKSSIPPKPKPRSPPLPPSEPQGKEIVIPSKDESQS 80 (184)
T ss_dssp C--HHHHHHHHHHHSSGGGEEEEEEESSGHHHHHHHHHHHHTTSSHSCHGGSSSCSSSSSSCGGSSEEEEEEEESSSSSE
T ss_pred CCCHHHHHHHHHHhcCccceEEEEEcCccHHHHHHHHHhhhhhhcccccccccccccccccccccccccccccccccccc
Confidence 4789999999999999999999999999999999999999999987541 1111111011222233344444444789
Q ss_pred EEEEEeecCCC-CCcchHHHHHHHHHcCCCCCCCCCCCCcccHHHHHhc-cccceehhcccccCCCCcccEEEEeecCcc
Q 020661 192 QFAVAFAGASW-TDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVG-INEIAESMMAFNTNYKDTGLFGVYAVAKPD 269 (323)
Q Consensus 192 ~v~~~~~~~~~-~~~~~~~~~vl~~~l~~~~~~~~~~~~~~s~L~~~lr-e~g~~y~~~~~~~~~~~~~~~~i~~~~~~~ 269 (323)
.+.++|+.++. ++++..++.++.++|++ ++.++|++.|| +++++|++.+.+..+.+.+.|.+++.+.++
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~l~~~l~~---------~~~s~l~~~lr~~~~l~y~v~~~~~~~~~~~~~~i~~~~~~~ 151 (184)
T PF05193_consen 81 IVSIAFPGPPIKDSKDYFALNLLSSLLGN---------GMSSRLFQELREKQGLAYSVSASNSSYRDSGLFSISFQVTPE 151 (184)
T ss_dssp EEEEEEEEEETGTSTTHHHHHHHHHHHHC---------STTSHHHHHHHTTTTSESEEEEEEEEESSEEEEEEEEEEEGG
T ss_pred ccccccccccccccchhhHHHHHHHHHhc---------CccchhHHHHHhccccceEEEeeeeccccceEEEEEEEcCcc
Confidence 99999999988 89999999999999985 46899999999 599999999987766788999999999999
Q ss_pred cHHHHHHHHHHHHHHhcc-CCCHHHHHHHHHHH
Q 020661 270 CLDDLAYAIMYETTKLAY-RVSEADVTRARNQV 301 (323)
Q Consensus 270 ~~~~~~~~~~~~~~~l~~-~is~~el~~ak~~~ 301 (323)
++.++++.+.++++++.+ +++++||+++|+++
T Consensus 152 ~~~~~~~~~~~~l~~l~~~~~s~~el~~~k~~L 184 (184)
T PF05193_consen 152 NLDEAIEAILQELKRLREGGISEEELERAKNQL 184 (184)
T ss_dssp GHHHHHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 999999999999999999 99999999999875
No 11
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=99.91 E-value=6e-23 Score=190.24 Aligned_cols=296 Identities=19% Similarity=0.263 Sum_probs=237.9
Q ss_pred CccccCCCCChHHHHHH-HHhc-CCeeeeeecceeEEEEEEecc-ccHHHHHHHHHHHhhCCCCChHHHHHH--------
Q 020661 1 MIFKGTEKRTARDLEEE-IENM-GGHLNAYTSREQTTYYAKVLD-KDVNNALDILADILQNSTFDQARITRE-------- 69 (323)
Q Consensus 1 ~~f~Gt~~~~~~~~~~~-l~~~-g~~~~~~t~~~~~~~~~~~~~-~~l~~~l~ll~~~l~~p~~~~~~~~~~-------- 69 (323)
++|||+.+|+.++..-. +.+- +-.+||.|..|.|.|-+++.. +++-.++....+.+.+|.+.++.|.+|
T Consensus 66 tvlcGS~kYPvkdPF~~ml~rSLntF~NA~T~~D~T~YP~sS~~~~Df~NLl~VYlDavf~PlL~~e~F~QEgwr~e~~~ 145 (978)
T COG1026 66 TVLCGSKKYPVKDPFFKMLKRSLNTFLNAFTFPDKTVYPASSANEKDFYNLLSVYLDAVFHPLLTKESFLQEGWRIEFKD 145 (978)
T ss_pred HhhhCCCCCCCCChHHHHHHHhHHHHHhhccCCCcceeeccccCcchHHHHHHHHHHhhhCcccchHHHhhhhhccccCC
Confidence 57999999998885444 4433 344999999999999998765 789999999999999999999998877
Q ss_pred ------HHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEcCCC
Q 020661 70 ------RDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVK 143 (323)
Q Consensus 70 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~ 143 (323)
+.+|.+|++....++..++++.+...+|++..|+....|.+..|..++.|++++||+++|.|+|+.+++.||++
T Consensus 146 ~~~l~~~GVVyNEMKGa~ss~~~~~~~~~~~slfp~~ty~~~SGG~P~~I~~LtyE~~r~FHkk~Y~pSN~~i~~yGni~ 225 (978)
T COG1026 146 ESNLKYKGVVYNEMKGAYSSGESVLSRAMQQSLFPGTTYGVNSGGDPKNIPDLTYEEFRAFHKKHYHPSNCKIFVYGNIP 225 (978)
T ss_pred CccceeeeEEeehhcccccCchhHHHHHHHHhhCCCccccccCCCCcccccccCHHHHHHHHHHhCCccceEEEEECCCC
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-hcCCCCCCCcccccccCCCccccCC-c----eee--ecCCCCceEEEEEeecCCCCC-cchHHHHHHH
Q 020661 144 HEEVVEQVKKL-FTKLSADPTTASQLVANEPAIFTGS-E----VRI--IDDDIPLAQFAVAFAGASWTD-PDSIALMVMQ 214 (323)
Q Consensus 144 ~~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~--~~~~~~~~~v~~~~~~~~~~~-~~~~~~~vl~ 214 (323)
.++..+.+++. +...+... ...+.+. ...+... + ..+ ...+..++.+.++|..+...+ .+..++.||.
T Consensus 226 ~~~~L~~iee~~l~~~~k~~-~~~~i~~--~~~~~~~~~~~~~ypi~~~~~de~q~~~~lsWl~~~~~d~~~~lal~vL~ 302 (978)
T COG1026 226 TERLLDFIEEKVLRPFGKRE-LDVPIPD--QKAFKKPRRKVLEYPISFDEEDEDQGLLSLSWLGGSASDAEDSLALEVLE 302 (978)
T ss_pred HHHHHHHHHHhhhccccccc-cCCCCCc--ccccCcccccceeeccCCCCCCCceeEEEEEEecCCcccHHHHHHHHHHH
Confidence 99999999888 55554433 2221221 1111111 1 111 223456888899999988665 6889999999
Q ss_pred HHcCCCCCCCCCCCCcccHHHHHhccccce-ehhcccccCCCCcccEEEEeec-CcccHHHHHHHHHHHHHHhcc-CCCH
Q 020661 215 AMLGSWNKNSVGGKHMGSELAQRVGINEIA-ESMMAFNTNYKDTGLFGVYAVA-KPDCLDDLAYAIMYETTKLAY-RVSE 291 (323)
Q Consensus 215 ~~l~~~~~~~~~~~~~~s~L~~~lre~g~~-y~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~l~~-~is~ 291 (323)
.+|-+ +..++|.++|-|.|++ +.+...+........|.+.+.. ..++.++..+.+.+.++.+.. +++.
T Consensus 303 ~iLl~---------~~asPl~~~liesglg~~~~~g~~~~~~~~~~f~v~~~gv~~ek~~~~k~lV~~~L~~l~~~gi~~ 373 (978)
T COG1026 303 EILLD---------SAASPLTQALIESGLGFADVSGSYDSDLKETIFSVGLKGVSEEKIAKLKNLVLSTLKELVKNGIDK 373 (978)
T ss_pred HHHcc---------CcccHHHHHHHHcCCCcccccceeccccceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 99975 3589999999998887 4444445555556666655554 458899999999999999999 9999
Q ss_pred HHHHHHHHHHHHccCCC
Q 020661 292 ADVTRARNQVAASLPTY 308 (323)
Q Consensus 292 ~el~~ak~~~~~~~~~~ 308 (323)
+.++.++.++.-++...
T Consensus 374 ~~ie~~~~q~E~s~ke~ 390 (978)
T COG1026 374 KLIEAILHQLEFSLKEV 390 (978)
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 99999999988877665
No 12
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=99.88 E-value=1.1e-19 Score=151.85 Aligned_cols=294 Identities=23% Similarity=0.318 Sum_probs=231.2
Q ss_pred ccccCCCCChHHHHHHHHhcCCeeeeeecceeEEEEEEeccccHHHHHHHHHHHhhCCCCChHHHHHHH-HHHHHHHHHh
Q 020661 2 IFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRER-DVILREMEEV 80 (323)
Q Consensus 2 ~f~Gt~~~~~~~~~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~~~~~~-~~~~~~~~~~ 80 (323)
.|+.|++++.-.+.+..+..|+.++.+.++|.+.+.+++++++++..+.+|.+++..|.|-+++++... ..+..++.
T Consensus 72 ~g~~Tq~~sal~ivr~se~~GG~Lss~~tRe~~~~tvt~lrd~~~~~l~~L~~V~~~paFkPwEl~D~~~~ti~~~l~-- 149 (429)
T KOG2583|consen 72 VGRDTQERSALKIVRESEQLGGTLSSTATRELIGLTVTFLRDDLEYYLSLLGDVLDAPAFKPWELEDVVLATIDADLA-- 149 (429)
T ss_pred cccCccccchhhhhhhhHhhCceeeeeeecceEEEEEEEecccHHHHHHHHHHhhcccCcCchhhhhhhhhhhHHHhh--
Confidence 467889999999999999999999999999999999999999999999999999999999999999888 66666554
Q ss_pred hCChHHHHHHHHHHHhcCCCCCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHHHHhcCCCC
Q 020661 81 EGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSA 160 (323)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~~~~~~~~~ 160 (323)
..+|...+.+.+|+..|.+ .++.+++-+.-++.+++.++|++|..++|..+|++++-+| ++++.+....++++. ++.
T Consensus 150 ~~t~~~~a~e~lH~aAfRn-gLgnslY~p~~~vg~vss~eL~~Fa~k~fv~gn~~lvg~n-vd~~~L~~~~~~~~~-~~~ 226 (429)
T KOG2583|consen 150 YQTPYTIAIEQLHAAAFRN-GLGNSLYSPGYQVGSVSSSELKDFAAKHFVKGNAVLVGVN-VDHDDLKQFADEYAP-IRD 226 (429)
T ss_pred hcChHHHHHHHHHHHHHhc-ccCCcccCCcccccCccHHHHHHHHHHHhhccceEEEecC-CChHHHHHHHHHhcc-ccC
Confidence 4789999999999999988 8888888777789999999999999999999999999999 999999999999832 322
Q ss_pred CCCcccccccCCCccccCCceeeecCCCCceEEEEEeecCC-CCCcchHHHHHHHHHcCCCCCCCCCCCCcccHHHHHhc
Q 020661 161 DPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGAS-WTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVG 239 (323)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~vl~~~l~~~~~~~~~~~~~~s~L~~~lr 239 (323)
...... .+..+.+++.+.... .+..++.+...+.. .+.++..+..++.++|+.+.... +..-+..++-
T Consensus 227 ~~~~k~-----a~a~~~gGe~Rk~~~-g~~~~v~vagegAAa~~~k~~~a~av~~~~Lg~~~~~k-----~~t~~~~~aa 295 (429)
T KOG2583|consen 227 GLPLKP-----APAKYSGGEARKDAR-GNRVHVAVAGEGAAAGNLKVLAAQAVLLAALGNSAPVK-----RGTGLLSEAA 295 (429)
T ss_pred CCCCCC-----CCccccCCccccccC-CceeEEEEecCcccccchHHHHHHHHHHHHHhcccccc-----cccchHHHHH
Confidence 211111 244555666555443 35566666554443 44688889999999998632100 0122333333
Q ss_pred c--ccceehhcccccCCCCcccEEEEeecCcccHHHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHccCCCCCC
Q 020661 240 I--NEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAY-RVSEADVTRARNQVAASLPTYPGY 311 (323)
Q Consensus 240 e--~g~~y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~is~~el~~ak~~~~~~~~~~~~~ 311 (323)
. .+..-++.++..+|.+.|+|.+++..+..+..++++.....++.... +++......+++.++.....+.+.
T Consensus 296 ~~a~~~~~s~sA~~a~ysDsGL~gv~~~~~~~~a~~~v~s~v~~lks~~~~~id~~~~~a~~~~l~~~~~ss~~a 370 (429)
T KOG2583|consen 296 GAAGEQGASASAFNAPYSDSGLFGVYVSAQGSQAGKVVSSEVKKLKSALVSDIDNAKVKAAIKALKASYLSSVEA 370 (429)
T ss_pred hhccccCceeeeecccccCCceEEEEEEecCccHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhcchHH
Confidence 2 12233466788899999999999999998899999999999988888 898888888888777766554443
No 13
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=99.84 E-value=3.6e-19 Score=165.40 Aligned_cols=292 Identities=19% Similarity=0.263 Sum_probs=200.7
Q ss_pred ccCCCCChHHHHHHHHhcCCeeeeeec-----------ceeEEEEEEeccccHHHHHHHHHHHhhCCCC-ChHHHHHHHH
Q 020661 4 KGTEKRTARDLEEEIENMGGHLNAYTS-----------REQTTYYAKVLDKDVNNALDILADILQNSTF-DQARITRERD 71 (323)
Q Consensus 4 ~Gt~~~~~~~~~~~l~~~g~~~~~~t~-----------~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~-~~~~~~~~~~ 71 (323)
.||+.+++.++...++.+.|+++++.+ +..+.|.+++..++.+++++++.+++.++.| |.+.+....+
T Consensus 578 lgt~~~~y~e~~~~i~~~TGgis~~~~~~~~~~~~~~~~~~~~i~~K~l~~k~~~~~~~i~~~l~~~~F~D~~Rlkell~ 657 (978)
T COG1026 578 LGTETYSYKELLNQIERHTGGISVSLSVDTDPGDDGEYRPSFSISGKALRSKVEKLFELIREILANTDFHDRERLKELLE 657 (978)
T ss_pred cCCCCcCHHHHHHHHHHHhCCceeeEeeccCCCccccccceEEEEEEehhhhhhHHHHHHHHHHhcCCcCcHHHHHHHHH
Confidence 599999999999999988665555432 2468899999999999999999999999999 5555555555
Q ss_pred HHHHHHHHhhCC-hHHHHHHHHHHHhcCCCCCCCCC--CCCccccccCCH-----------HHHHHHHHhhCCCCceEEE
Q 020661 72 VILREMEEVEGQ-TEEVIFDHLHATAFQYTPLGRTI--LGPAQNIKTITK-----------EHLQNYIHTHYTAPRMVIA 137 (323)
Q Consensus 72 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~l~~~~~-----------~~l~~~~~~~~~~~~~~l~ 137 (323)
..++.+.+...+ +...+.......++....+.... +...+-|.++.. +.|++.+++++..+|+.++
T Consensus 658 q~~~~l~~~vr~sG~~~A~~~~~s~~~~~~~l~e~~~Gl~q~k~i~~l~~~~~~~~~~ei~~kL~~l~~~i~~~~n~~i~ 737 (978)
T COG1026 658 QYLSDLTSSVRNSGHSIASSLANSRLSSAGALKELLNGLSQVKFLRELSSNFEENFEKEIADKLQALRKKIFQTNNLRIA 737 (978)
T ss_pred HHHhhhHHhhhccchHHHHHHhhcccccchhHHHHhcChhHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCceEEE
Confidence 666666664443 55666655555555443333221 112222222222 4588889999999999899
Q ss_pred EEcCCCHHHHHHHHHHHhcCCCC----CCC-cccccccCCCcccc-CCceeeecCCCCceEEEEEeecCCCCCcchHHHH
Q 020661 138 ASGAVKHEEVVEQVKKLFTKLSA----DPT-TASQLVANEPAIFT-GSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALM 211 (323)
Q Consensus 138 i~G~~~~~~~~~~v~~~~~~~~~----~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 211 (323)
+.|+.+ .+.+.+++.|-.+.. ... +..+... ...... ..+..+...+.....+++.+...++.+||++++.
T Consensus 738 i~~~~~--~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ii~~p~a~~~l~fs~~~~~y~hpd~~~l~ 814 (978)
T COG1026 738 IIGDID--KILDLLENPLLKFLEHLLPGFELPTPPKNP-HLDLISSLSEATIIPSPVAYNALAFSIGGLPYTHPDYAALQ 814 (978)
T ss_pred EecChh--hhHHHHHHHhhhhhcccCcccccCCCCCCc-chhhhccccceEEeccHHHHHHHhhhccCCCCCCccchHHH
Confidence 999875 233333344333321 111 1111100 011111 2233444444444444555567789999999999
Q ss_pred HHHHHcCCCCCCCCCCCCcccHHHHHhccccceehhcccccCCCCcccEEEEeecCcccHHHHHHHHHHHHHHhcc-CCC
Q 020661 212 VMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAY-RVS 290 (323)
Q Consensus 212 vl~~~l~~~~~~~~~~~~~~s~L~~~lre~g~~y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~is 290 (323)
|++++|+ +.+||..||+.|+|||+++... ...|.|.++...+|+ +.++++.+++.++.+.+ .++
T Consensus 815 vls~~L~------------~~~lw~~IR~~GGAYGa~as~~--~~~G~f~f~sYRDPn-~~kt~~v~~~~v~~l~s~~~~ 879 (978)
T COG1026 815 VLSEYLG------------SGYLWNKIREKGGAYGASASID--ANRGVFSFASYRDPN-ILKTYKVFRKSVKDLASGNFD 879 (978)
T ss_pred HHHHHhc------------cchhHHHHHhhccccccccccc--cCCCeEEEEecCCCc-HHHHHHHHHHHHHHHHcCCCC
Confidence 9999998 6899999999999999999887 556788877777665 78899999999999999 999
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCc
Q 020661 291 EADVTRARNQVAASLPTYPGYLDI 314 (323)
Q Consensus 291 ~~el~~ak~~~~~~~~~~~~~~~~ 314 (323)
++|+++++-.++..+.. .+++..
T Consensus 880 ~~d~~~~ilg~i~~~d~-p~sp~~ 902 (978)
T COG1026 880 ERDLEEAILGIISTLDT-PESPAS 902 (978)
T ss_pred HHHHHHHHHHhhccccc-ccCCcc
Confidence 99999999999887765 444443
No 14
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.1e-18 Score=154.63 Aligned_cols=302 Identities=17% Similarity=0.206 Sum_probs=228.3
Q ss_pred CccccCCCCChHHHHHHHHhc-CCeeeeeecceeEEEEEEecc-ccHHHHHHHHHHHhhCCCCChHHHHHH---------
Q 020661 1 MIFKGTEKRTARDLEEEIENM-GGHLNAYTSREQTTYYAKVLD-KDVNNALDILADILQNSTFDQARITRE--------- 69 (323)
Q Consensus 1 ~~f~Gt~~~~~~~~~~~l~~~-g~~~~~~t~~~~~~~~~~~~~-~~l~~~l~ll~~~l~~p~~~~~~~~~~--------- 69 (323)
|.|+|+++|+.+.+.+.+... -++.|+.|+.|+|.|.++..- +.+-.+|....+-+.+|.++++.+-.+
T Consensus 65 L~FMGSKkYP~kGvLd~~anr~l~dtNAwTDtD~T~YtLStag~dGFlklLPvy~dHiL~P~Ltdeaf~TEVyHI~geg~ 144 (1022)
T KOG0961|consen 65 LVFMGSKKYPFKGVLDVIANRCLADTNAWTDTDHTAYTLSTAGSDGFLKLLPVYIDHILTPMLTDEAFATEVYHITGEGN 144 (1022)
T ss_pred HhhhccccCCcccHHHHhhcchhcccccccccCcceEEeecccccchHHHhHHHHHhhcCcccchhhhhhheeeecCCCC
Confidence 579999999999988887765 467999999999999998765 669999999999999999999998877
Q ss_pred -HHHHHHHHHHhhCChHHHHHHHHHHHhcC-CCCCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHH
Q 020661 70 -RDVILREMEEVEGQTEEVIFDHLHATAFQ-YTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEV 147 (323)
Q Consensus 70 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~ 147 (323)
...+.+|++..+..-...+.+.....+|| .++|.....|....++.++.|.+++||+++|.++||+++|.|+++.+++
T Consensus 145 d~GVVySEMq~~es~~~~im~~~~~~~~yP~~sgY~~eTGG~~knLR~lt~ekIR~yHK~~Y~~sN~cviVcG~v~~d~l 224 (1022)
T KOG0961|consen 145 DAGVVYSEMQDHESEMESIMDRKTKEVIYPPFSGYAVETGGRLKNLRELTLEKIRDYHKKFYHLSNMCVIVCGMVDHDQL 224 (1022)
T ss_pred ccceeehhhhhhhcccchhhhhhhheeecCCCCCceeccCCChhhHHHhhHHHHHHHHHHhccccceEEEEecCcCHHHH
Confidence 56889999998888778888888899997 8899999899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCc--c---ccccc-CCCc---cccCCceeeecCCCCceEEEEEeecCCCCC-cchHHHHHHHHHc
Q 020661 148 VEQVKKLFTKLSADPTT--A---SQLVA-NEPA---IFTGSEVRIIDDDIPLAQFAVAFAGASWTD-PDSIALMVMQAML 217 (323)
Q Consensus 148 ~~~v~~~~~~~~~~~~~--~---~~~~~-~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~vl~~~l 217 (323)
.......-..++..+.. . +|+.. +.+. ...-+.+.....+..+..|.++|.+++..+ ....|++++..+|
T Consensus 225 L~~m~~~~neile~~s~vP~~~~rPf~~tn~~~~i~e~t~~tVefp~~Des~G~v~~aW~g~s~sD~~t~~a~~vL~dyl 304 (1022)
T KOG0961|consen 225 LEIMNNVENEILEHMSTVPDHFPRPFSFTNALSDIKESTVHTVEFPTDDESRGAVEVAWFGHSPSDLETHSALHVLFDYL 304 (1022)
T ss_pred HHHHHHHHhhhhhccccCCCCCCCCcccccCcccCCccceeeeecCCcccccceEEEEEcCCCHHHhhhHHHHHHHHHHh
Confidence 88877665444332211 1 11111 0011 111223344445667889999999998766 4557999999999
Q ss_pred CCCCCCCCCCCCcccHHHHHhcc--ccceehhcccccCCCCcccEEEEeecCc-ccHHHHHHHHHHHHHHhccCCCHHHH
Q 020661 218 GSWNKNSVGGKHMGSELAQRVGI--NEIAESMMAFNTNYKDTGLFGVYAVAKP-DCLDDLAYAIMYETTKLAYRVSEADV 294 (323)
Q Consensus 218 ~~~~~~~~~~~~~~s~L~~~lre--~g~~y~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~l~~~is~~el 294 (323)
... .-+++.+.+-| ..+|-++++... ++-.-.+.+.+.+-| +++++....+.+.+..-. .|+-+.+
T Consensus 305 s~s---------avapf~~~fVeieDP~assv~f~~~-~~vrc~i~L~f~gVP~EKi~~~~~k~l~~l~et~-~iDm~Rm 373 (1022)
T KOG0961|consen 305 SNS---------AVAPFQKDFVEIEDPLASSVSFHIA-EGVRCDIRLNFAGVPVEKIDECAPKFLDKLVETA-NIDMERM 373 (1022)
T ss_pred ccc---------cccccccceEEecCccccceeeeee-cccceeEEEeecCCcHHHhhhhhHHHHHHHHHhc-ccCHHHH
Confidence 752 36678888774 567766655433 233344445555555 888888777776664322 6888888
Q ss_pred HHHHHHHHHccCCCCCCCC
Q 020661 295 TRARNQVAASLPTYPGYLD 313 (323)
Q Consensus 295 ~~ak~~~~~~~~~~~~~~~ 313 (323)
....++-+.+....+|...
T Consensus 374 ~~~i~~t~~~yL~nlE~n~ 392 (1022)
T KOG0961|consen 374 GYLIDQTILNYLVNLETNA 392 (1022)
T ss_pred HHHHHHHHHHHHHhhhcCC
Confidence 8888888887777777644
No 15
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=4.8e-18 Score=150.80 Aligned_cols=296 Identities=17% Similarity=0.192 Sum_probs=235.9
Q ss_pred ccccCCCCChHH-HHHHHHhc-CCeeeeeecceeEEEEEEec-cccHHHHHHHHHHHhhCCCCChHHHHHH---------
Q 020661 2 IFKGTEKRTARD-LEEEIENM-GGHLNAYTSREQTTYYAKVL-DKDVNNALDILADILQNSTFDQARITRE--------- 69 (323)
Q Consensus 2 ~f~Gt~~~~~~~-~~~~l~~~-g~~~~~~t~~~~~~~~~~~~-~~~l~~~l~ll~~~l~~p~~~~~~~~~~--------- 69 (323)
+.||+.+|+-++ +.+.|.+- .-.+|++|..|+|.|-++.. +.++..+.....+....|..-+.+|.+|
T Consensus 99 vLCGS~KYPvrdPFfkmLnrSLatFmNAfT~pD~T~yPfattN~kDf~NL~dVYLDAtffPklr~~dF~QEGWr~Eh~dp 178 (998)
T KOG2019|consen 99 VLCGSRKYPVRDPFFKMLNRSLATFMNAFTAPDYTFYPFATTNTKDFYNLRDVYLDATFFPKLRKLDFQQEGWRLEHNDP 178 (998)
T ss_pred eeeccCcCcccChHHHHHHHHHHHHHhhccCCCcceeecccCChHHHHHHHHHhhhcccchHHHhhhhhhhcceeecCCC
Confidence 468999998555 77777754 44599999999999998765 4789999999988888888777777776
Q ss_pred ---------HHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEc
Q 020661 70 ---------RDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASG 140 (323)
Q Consensus 70 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G 140 (323)
+.+|.+|++..-++|...++..+...+++++.|+....|++..|..++.+++++||+++|.|+|+.+...|
T Consensus 179 sd~~SpivfkGVVfNEMKG~~S~~~~if~~~~Qq~L~p~~tYgv~SGGDPl~IpdLt~eelk~FHr~~YHPSNAri~tYG 258 (998)
T KOG2019|consen 179 SDPISPIVFKGVVFNEMKGQYSDPDYIFGMLFQQALFPENTYGVNSGGDPLDIPDLTYEELKEFHRQHYHPSNARIFTYG 258 (998)
T ss_pred CCCcccceeeeeeeecccccccChhHHHHHHHHHhhCccccccccCCCCcccCccccHHHHHHHHHhccCCCcceeEeec
Confidence 67889999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCcccccccCCCccccCCceee-------ecCCCCceEEEEEeecCC-CCCcchHHHHH
Q 020661 141 AVKHEEVVEQVKKLFTKLSADPTTASQLVANEPAIFTGSEVRI-------IDDDIPLAQFAVAFAGAS-WTDPDSIALMV 212 (323)
Q Consensus 141 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~~~~-~~~~~~~~~~v 212 (323)
|++.++.+++++..|....+........ .+..+..++... -..+..+....+.|..+. .+..+..++.+
T Consensus 259 n~Pl~~~l~~l~e~~~~~sk~~~s~kv~---~qk~f~kp~rvve~~p~d~~~~p~Kq~~~s~s~L~~~p~d~~etfaL~~ 335 (998)
T KOG2019|consen 259 NFPLEDLLKQLEEDFSPFSKRELSSKVT---FQKLFDKPRRVVEKGPADPGDLPKKQTKCSNSFLSNDPLDTYETFALKV 335 (998)
T ss_pred CchHHHHHHHHHHhhcccccccccCccc---cccccccCceeeeecCCCCCCCccceeEEEEEeecCCchhHHHHHHHHH
Confidence 9999999999998877654433222111 122222222111 123446677778887765 44568899999
Q ss_pred HHHHcCCCCCCCCCCCCcccHHHHHhccccce--ehhcccccCCCCcccEEEEeecC-cccHHHHHHHHHHHHHHhcc-C
Q 020661 213 MQAMLGSWNKNSVGGKHMGSELAQRVGINEIA--ESMMAFNTNYKDTGLFGVYAVAK-PDCLDDLAYAIMYETTKLAY-R 288 (323)
Q Consensus 213 l~~~l~~~~~~~~~~~~~~s~L~~~lre~g~~--y~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~l~~-~ 288 (323)
++.++-+ +.+|++++.|-|.|++ .++.+.+......+.|.+-..+- .+++..+.+.+...++.+.. +
T Consensus 336 L~~Ll~~---------gpsSp~yk~LiESGLGtEfsvnsG~~~~t~~~~fsVGLqGvseediekve~lV~~t~~~lae~g 406 (998)
T KOG2019|consen 336 LSHLLLD---------GPSSPFYKALIESGLGTEFSVNSGYEDTTLQPQFSVGLQGVSEEDIEKVEELVMNTFNKLAETG 406 (998)
T ss_pred HHHHhcC---------CCccHHHHHHHHcCCCcccccCCCCCcccccceeeeeeccccHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999973 5799999999998766 55777887777778888777654 47888999999999999999 9
Q ss_pred CCHHHHHHHHHHHHHccCCCC
Q 020661 289 VSEADVTRARNQVAASLPTYP 309 (323)
Q Consensus 289 is~~el~~ak~~~~~~~~~~~ 309 (323)
|+.+-++....++.-++....
T Consensus 407 fd~drieAil~qiEislk~qs 427 (998)
T KOG2019|consen 407 FDNDRIEAILHQIEISLKHQS 427 (998)
T ss_pred cchHHHHHHHHHhhhhhhccc
Confidence 999999998888776665543
No 16
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=6.7e-18 Score=149.91 Aligned_cols=290 Identities=15% Similarity=0.174 Sum_probs=202.2
Q ss_pred ccccCCCCChHHHHHHHHhcCCeeeeeecc----------eeEEEEEEeccccHHHHHHHHHHHhhCCCCCh-HHHHHHH
Q 020661 2 IFKGTEKRTARDLEEEIENMGGHLNAYTSR----------EQTTYYAKVLDKDVNNALDILADILQNSTFDQ-ARITRER 70 (323)
Q Consensus 2 ~f~Gt~~~~~~~~~~~l~~~g~~~~~~t~~----------~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~-~~~~~~~ 70 (323)
+..||+..+..++.+.+.++.|+++++... ..+.|...+...+++.+++++..++.++.|++ +.|....
T Consensus 610 l~lGt~~lsf~el~qqI~rkTGGiS~~p~~~s~~~~d~p~~~i~~~~~~l~rn~~dlfel~n~il~e~~f~n~dkfkvlv 689 (998)
T KOG2019|consen 610 LNLGTGDLSFVELEQQIGRKTGGISVSPLVSSDDGMDEPELGIVFSGSMLDRNADDLFELWNKILQETCFTNQDKFKVLV 689 (998)
T ss_pred HhcCCCcccHHHHHHHhhhhcCceeecceeccCCCCCccceeEEechhhhcCChhHHHHHHHHHhcccCcccHHHHHHHH
Confidence 467999999999999999987776665421 23567778888999999999999999999995 3355555
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHHHhcCCCCCCCCCCCCccccccC------C-------HHHHHHHHHhhCCCCceEEE
Q 020661 71 DVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTI------T-------KEHLQNYIHTHYTAPRMVIA 137 (323)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~------~-------~~~l~~~~~~~~~~~~~~l~ 137 (323)
....+++.+...+...-+......+.+.....-..-+|...+++=+ . .+.|.++.+.+...++|.+.
T Consensus 690 k~s~s~~~n~i~dsGH~~A~~rs~a~l~~ag~i~EqlgGl~ql~fl~~L~~~~d~d~~~i~~kL~eIrk~ll~~ng~~~~ 769 (998)
T KOG2019|consen 690 KQSASRMTNGIADSGHGFAAARSAAMLTPAGWISEQLGGLSQLEFLHRLEEKVDNDWEPIVSKLTEIRKSLLNTNGMIVN 769 (998)
T ss_pred HHHHHHhhccCCcccchhHhhhhhcccCcccchHhHhcchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 5555555554444333322222222222221112223333333211 1 13466777777888999999
Q ss_pred EEcCC-CHHHHHHHHHHHhcCCCC-CCCcccccccCCCccccCCceeeecCCCCceEEEEEeecCCCCCcchHHHHHHHH
Q 020661 138 ASGAV-KHEEVVEQVKKLFTKLSA-DPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQA 215 (323)
Q Consensus 138 i~G~~-~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~ 215 (323)
|+.+- ....+++.|++++..+|. .+......-. ...+.....+.+..+..+..++.-+..+.++++++.+++.|++.
T Consensus 770 itAd~~q~~~vEkav~kFl~~lp~e~p~g~~st~d-~r~p~~~~~i~~~~P~fqvnyvgka~~~vpyt~~d~asl~vlS~ 848 (998)
T KOG2019|consen 770 ITADPKQLTNVEKAVEKFLDSLPRENPSGSKSTWD-ARLPLRSEAIRVVIPTFQVNYVGKAGLGVPYTHPDGASLQVLSK 848 (998)
T ss_pred EecCcccchhHHHHHHHHHHhccccCCCCCccCcc-ccCCCCceeEEEeccccchhhhhhhcccccCCCCCCcHHHHHHH
Confidence 98874 578899999999999984 3332221111 11112222233333334567888888899999999999999999
Q ss_pred HcCCCCCCCCCCCCcccHHHHHhccccceehhcccccCCCCcccEEEEeecCcccHHHHHHHHHHHHHHhcc-CCCHHHH
Q 020661 216 MLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAY-RVSEADV 294 (323)
Q Consensus 216 ~l~~~~~~~~~~~~~~s~L~~~lre~g~~y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~is~~el 294 (323)
+|. +..||.++||.|+||+.++.+. ...|.|.++.+.+|. +.+.++.+...-+-++. .++.++|
T Consensus 849 ~lt------------~k~Lh~evRekGGAYGgg~s~~--sh~GvfSf~SYRDpn-~lktL~~f~~tgd~~~~~~~~~~dl 913 (998)
T KOG2019|consen 849 LLT------------NKWLHDEVREKGGAYGGGCSYS--SHSGVFSFYSYRDPN-PLKTLDIFDGTGDFLRGLDVDQQDL 913 (998)
T ss_pred HHH------------HHHHHHHHHHhcCccCCccccc--cccceEEEEeccCCc-hhhHHHhhcchhhhhhcCCccccch
Confidence 997 7999999999999999999887 567888877777665 67788888877777777 8999999
Q ss_pred HHHHHHHHHccCC
Q 020661 295 TRARNQVAASLPT 307 (323)
Q Consensus 295 ~~ak~~~~~~~~~ 307 (323)
++||-.++.++-.
T Consensus 914 deAkl~~f~~VDa 926 (998)
T KOG2019|consen 914 DEAKLGTFGDVDA 926 (998)
T ss_pred hhhhhhhcccccC
Confidence 9999999987755
No 17
>PTZ00432 falcilysin; Provisional
Probab=99.77 E-value=1.1e-16 Score=157.75 Aligned_cols=287 Identities=15% Similarity=0.170 Sum_probs=190.9
Q ss_pred ccCCCCChHHHHHHHHhcCCeeeee----ec------------ceeEEEEEEeccccHHHHHHHHHHHhhCCCCChHH-H
Q 020661 4 KGTEKRTARDLEEEIENMGGHLNAY----TS------------REQTTYYAKVLDKDVNNALDILADILQNSTFDQAR-I 66 (323)
Q Consensus 4 ~Gt~~~~~~~~~~~l~~~g~~~~~~----t~------------~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~-~ 66 (323)
.||+++++.++...++.+.|+++++ ++ ...+.++++++.++++++++++.+++.++.|++.. +
T Consensus 711 ~gT~~~s~~el~~~i~~~tGg~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~l~~~~~~~~~l~~eil~~~~f~d~~rl 790 (1119)
T PTZ00432 711 NGTDKLSSEEFTYKREKNLGGLSASTAFYSETNNLTYDDPYNGVGYLNVRAKVLKHKVNEMVDIVLEALKDADFSNSKKG 790 (1119)
T ss_pred cCCCCCCHHHHHHHHHHhCCCeEEEEEEeccccccccCcccccceEEEEEEEEhhhhHHHHHHHHHHHHhcCCCCcHHHH
Confidence 5999999999999999987666654 22 23688999999999999999999999999999743 5
Q ss_pred HHHHHHHHHHHHHhhC-ChHHHHHHHHHHHhcCCCCCCCCCCC---CccccccCC-----------HHHHHHHHHhhCCC
Q 020661 67 TRERDVILREMEEVEG-QTEEVIFDHLHATAFQYTPLGRTILG---PAQNIKTIT-----------KEHLQNYIHTHYTA 131 (323)
Q Consensus 67 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~l~~~~-----------~~~l~~~~~~~~~~ 131 (323)
.......+..+.+... +....+...+... +....+....++ ....|+.+. .+.|.+.+++++++
T Consensus 791 ~~il~~~~~~~~~~~~~~Gh~~A~~~~~s~-~S~~~~~~e~~~G~~~~~fl~~l~~~~~e~~~~~v~~~L~~i~~~i~~~ 869 (1119)
T PTZ00432 791 VEILKRKINGMKTVFSSKGHKFALKRMKSK-FSVSDYADELVNGYSQLLFLKETLVPLAEKDWSKVESKLNEIRNKLLSM 869 (1119)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHhc-CCHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCc
Confidence 5555555555555333 3333333222221 111111111111 222233221 23488889999999
Q ss_pred CceEEEEEcCCC-HHHHHHHHHHHhcCCCCC----C--Cccccccc-C-CCccccC-CceeeecCCCCceEEEEEeecCC
Q 020661 132 PRMVIAASGAVK-HEEVVEQVKKLFTKLSAD----P--TTASQLVA-N-EPAIFTG-SEVRIIDDDIPLAQFAVAFAGAS 201 (323)
Q Consensus 132 ~~~~l~i~G~~~-~~~~~~~v~~~~~~~~~~----~--~~~~~~~~-~-~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~ 201 (323)
+|+.+.++|+.+ .+.+.+.+..++..++.. . ....+... . ....+.. .....+..+...+++..+.+...
T Consensus 870 ~~l~~~vt~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~p~~V~yv~~~~~~~~ 949 (1119)
T PTZ00432 870 KNLTVNVTGDSELLDSLLDDSTTFLKKLSSTFKENDNKSSDKVWVKEVLDKKLMESVDKNEFIVLPTRVNFVGMGGKLFD 949 (1119)
T ss_pred CCcEEEEEeCHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccCCcccceEEEccCceeEEEEeccccc
Confidence 999999999874 556666666676666421 1 11111110 0 0000010 11123334556777777766566
Q ss_pred CCCcchHHHHHHHHHcCCCCCCCCCCCCcccHHHHHhccccceehhcccccCCCCcccEEEEeecCcccHHHHHHHHHHH
Q 020661 202 WTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYE 281 (323)
Q Consensus 202 ~~~~~~~~~~vl~~~l~~~~~~~~~~~~~~s~L~~~lre~g~~y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 281 (323)
+++++.+++.|+..+|. .+.||..||++|+|||+++... ..|.|.++...+|. +.++++.+.+.
T Consensus 950 ~~~~~~~~l~Vl~~~L~------------~~yLw~~IR~~GGAYG~~~~~~---~~G~~~f~SYRDPn-~~~Tl~~f~~~ 1013 (1119)
T PTZ00432 950 KSDKVDGSFQVIVHYLK------------NSYLWKTVRMSLGAYGVFADLL---YTGHVIFMSYADPN-FEKTLEVYKEV 1013 (1119)
T ss_pred CCCccCHHHHHHHHHHc------------cccchHHHcccCCccccCCccC---CCCeEEEEEecCCC-HHHHHHHHHHH
Confidence 77788999999999997 6899999999999999987664 24888877666664 67777777777
Q ss_pred HHHhcc---CCCHHHHHHHHHHHHHccCC
Q 020661 282 TTKLAY---RVSEADVTRARNQVAASLPT 307 (323)
Q Consensus 282 ~~~l~~---~is~~el~~ak~~~~~~~~~ 307 (323)
.+-+++ .+++++|++++-..+.++-.
T Consensus 1014 ~~~l~~~~~~~~~~~l~~~iig~~~~~D~ 1042 (1119)
T PTZ00432 1014 ASALREAAETLTDKDLLRYKIGKISNIDK 1042 (1119)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhccCC
Confidence 777766 39999999999999988765
No 18
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=99.71 E-value=8.1e-17 Score=123.93 Aligned_cols=109 Identities=43% Similarity=0.820 Sum_probs=105.1
Q ss_pred CccccCCCCChHHHHHHHHhcCCeeeeeecceeEEEEEEeccccHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHh
Q 020661 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEV 80 (323)
Q Consensus 1 ~~f~Gt~~~~~~~~~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~~~~~~~~~~~~~~~~ 80 (323)
|+|+||.+++..++.+.++.+|+.++++|+.+++.|.+++++++++.+|+++++++.+|.|++++|+++|..+..+++..
T Consensus 40 l~~~gs~~~~~~~l~~~l~~~G~~~~~~t~~d~t~~~~~~~~~~~~~~l~~l~~~~~~P~f~~~~~~~~r~~~~~ei~~~ 119 (149)
T PF00675_consen 40 LLFRGSKKYSSDELQEELESLGASFNASTSRDSTSYSASVLSEDLEKALELLADMLFNPSFDEEEFEREREQILQEIEEI 119 (149)
T ss_dssp HTTSBBSSSBHHHHHHHHHHTTCEEEEEEESSEEEEEEEEEGGGHHHHHHHHHHHHHSBGGCHHHHHHHHHHHHHHHHHH
T ss_pred hcccccchhhhhhhHHHhhhhccccceEecccceEEEEEEecccchhHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCChHHHHHHHHHHHhcCCCCCCCCCCCC
Q 020661 81 EGQTEEVIFDHLHATAFQYTPLGRTILGP 109 (323)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 109 (323)
..+|...+.+.+++.+|.++||++++.|+
T Consensus 120 ~~~~~~~~~~~l~~~~f~~~p~~~~~~~~ 148 (149)
T PF00675_consen 120 KENPQELAFEKLHSAAFRGHPYGNPLLGP 148 (149)
T ss_dssp TTHHHHHHHHHHHHHHHTTSGGGSHSS-T
T ss_pred HCCHHHHHHHHHHHHHhccCCCCCCCCCC
Confidence 99999999999999999999999998775
No 19
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1.5e-13 Score=128.07 Aligned_cols=275 Identities=11% Similarity=0.086 Sum_probs=200.8
Q ss_pred CCeeeeeecceeEEEEEEeccccHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHH-hhCChHHHHHHHHHHHhcCCC
Q 020661 22 GGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEE-VEGQTEEVIFDHLHATAFQYT 100 (323)
Q Consensus 22 g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 100 (323)
|..++...+.++..++++|.++.++.++..+.+.+..-.++++.|+..|..+.++++. ....|...+.+.+...+-..+
T Consensus 570 G~sfs~~~~~~Gl~ltisGft~~lp~L~~~~l~~l~~~~~~~~~f~~~K~~~~~~~~~a~~~~p~~~~~~~l~~l~~~~~ 649 (937)
T COG1025 570 GLSFSLAANSNGLDLTISGFTQRLPQLLRAFLDGLFSLPVDEDRFEQAKSQLSEELKNALTGKPYRQALDGLTGLLQVPY 649 (937)
T ss_pred ceEEEeecCCCceEEEeeccccchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHhhhhhCCCC
Confidence 6678888888999999999999999999999999999999999999999999999998 557799988888887766543
Q ss_pred CCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHHHHhcCCCCCCCcccccccCCCccccCCc
Q 020661 101 PLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSADPTTASQLVANEPAIFTGSE 180 (323)
Q Consensus 101 ~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (323)
.+...-.+.++.++.+++.+|...++++......+.||++.+++.++.+.....++..+......+. .....++.
T Consensus 650 ---~s~~e~~~~l~~v~~~e~~~f~~~l~~~~~lE~lv~Gn~~~~da~~l~~~~~~~l~~~~s~~~~~~~--~~~~~~~~ 724 (937)
T COG1025 650 ---WSREERRNALESVSVEEFAAFRDTLLNGVHLEMLVLGNLTEADATNLAETLQKKLPAIGSTWYRNPS--VYLLKGGT 724 (937)
T ss_pred ---cCHHHHHHHhhhccHHHHHHHHHHhhhccceeeeeeccchHHHHHHHHHHHHhhhcccCCcccCCCc--eeccCCCe
Confidence 2222356788999999999999999999999999999999999888887666555543331111110 00011111
Q ss_pred -eeeecCCCCceEEEEEeecCCCCC-cchHHHHHHHHHcCCCCCCCCCCCCcccHHHHHhc-cccceehhcccccCCCCc
Q 020661 181 -VRIIDDDIPLAQFAVAFAGASWTD-PDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVG-INEIAESMMAFNTNYKDT 257 (323)
Q Consensus 181 -~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~vl~~~l~~~~~~~~~~~~~~s~L~~~lr-e~g~~y~~~~~~~~~~~~ 257 (323)
+....-+.+.+-....+....+++ ++.+...++.+++ ...+|..|| +++++|-|.+++....+.
T Consensus 725 ~~~e~~~~~~~~an~~i~~~~~~~~~~~~a~s~Ll~~l~-------------~~~ff~~LRTkeQLGY~Vfs~~~~v~~~ 791 (937)
T COG1025 725 RIFETVGGESDSANAAILYPQQYDEIKSSALSSLLGQLI-------------HPWFFDQLRTKEQLGYAVFSGPREVGRT 791 (937)
T ss_pred eEeeeccCCcccccceeEeccccchHHHHHHHHHHHHHH-------------hHHhHHHhhhhhhcceEEEecceeecCc
Confidence 122222223333333333334443 3444446777877 578999999 899999999999888777
Q ss_pred ccEEEEeecCcccHHHHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHccCCCCCCCCc
Q 020661 258 GLFGVYAVAKPDCLDDLAYAIMYETTKLAY---RVSEADVTRARNQVAASLPTYPGYLDI 314 (323)
Q Consensus 258 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~---~is~~el~~ak~~~~~~~~~~~~~~~~ 314 (323)
..+.+++++........++.+...+..... +.++++++..|+.+++++.....+...
T Consensus 792 ~gi~f~vqS~~~~p~~L~~r~~~F~~~~~~~l~~ms~e~Fe~~k~alin~il~~~~nl~e 851 (937)
T COG1025 792 PGIGFLVQSNSKSPSYLLERINAFLETAEPELREMSEEDFEQIKKALINQILQPPQNLAE 851 (937)
T ss_pred cceEEEEeCCCCChHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHccCCCHHH
Confidence 777778887765444455554444444433 899999999999999999987776543
No 20
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.1e-11 Score=117.69 Aligned_cols=277 Identities=11% Similarity=0.124 Sum_probs=198.7
Q ss_pred hcCCeeeeeecceeEEEEEEeccccHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHH-hhCChHHHHHHHHHHHhcC
Q 020661 20 NMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEE-VEGQTEEVIFDHLHATAFQ 98 (323)
Q Consensus 20 ~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 98 (323)
..|-.++.+.+.....+.+.+.++++..+++.+.+.+.+..+++..|+..++.+.+++++ ...+|...+.+....++-.
T Consensus 575 ~aGl~~~~~~s~~G~~~~v~Gfnekl~~ll~~~~~~~~~f~~~~~rf~iike~~~~~~~n~~~~~p~~~a~~~~~lll~~ 654 (974)
T KOG0959|consen 575 LAGLTYSLSSSSKGVELRVSGFNEKLPLLLEKVVQMMANFELDEDRFEIIKELLKRELRNHAFDNPYQLANDYLLLLLEE 654 (974)
T ss_pred hccceEEeeecCCceEEEEeccCcccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhc
Confidence 347778888889999999999999999999999999999999999999999999999999 5667777777666665443
Q ss_pred CCCCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHHHHhcCCCCCCCccc-cc-----ccCC
Q 020661 99 YTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSADPTTAS-QL-----VANE 172 (323)
Q Consensus 99 ~~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~~~~~~~~~~~~~~~-~~-----~~~~ 172 (323)
. .+... .-.+.++.++.+++..|...++++--+.++|.||++.+++.++++.....+ ..+.+.. +. ....
T Consensus 655 ~-~W~~~--e~~~al~~~~le~~~~F~~~~~~~~~~e~~i~GN~te~~A~~l~~~v~d~l-~~~~~~~~p~~~~~~~~~~ 730 (974)
T KOG0959|consen 655 S-IWSKE--ELLEALDDVTLEDLESFISEFLQPFHLELLIHGNLTEKEALQLLKSVLDIL-KSAAPNSRPLFRSEHLPRR 730 (974)
T ss_pred c-ccchH--HHHHHhhcccHHHHHHHHHHHhhhhheEEEEecCcchHHHHHHHHHHHhhh-hccCCCCccccccccCccc
Confidence 3 33222 245777889999999999999999999999999999999999877766655 2111111 10 0001
Q ss_pred CccccCCceeee-c---CCCCceEEEEEeecCCCCCcchHHHHHHHHHcCCCCCCCCCCCCcccHHHHHhc-cccceehh
Q 020661 173 PAIFTGSEVRII-D---DDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVG-INEIAESM 247 (323)
Q Consensus 173 ~~~~~~~~~~~~-~---~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~~l~~~~~~~~~~~~~~s~L~~~lr-e~g~~y~~ 247 (323)
....+.+...+. . ...+.+.+.+.+.....+..+...+.++.+++. .++|+.|| ..+++|.+
T Consensus 731 ~~~lp~G~~~~~~~~~n~~~~ns~i~~~~Q~~~~~~~~~~~~~L~~~li~-------------ep~Fd~LRTkeqLGYiv 797 (974)
T KOG0959|consen 731 EIQLPNGDYYFYRHLLNKTDDNSCIEVYYQIGVQDTRDNAVLGLLEQLIK-------------EPAFDQLRTKEQLGYIV 797 (974)
T ss_pred ceeccCCceEEEEcccccCCCCceEEEEEEcccchhHHHHHHHHHHHHhc-------------cchHHhhhhHHhhCeEe
Confidence 111222222222 1 223456666766654455567788899999995 68999999 67888887
Q ss_pred cccccCCCCcccEEEEeecC--cccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCCCCCCCC
Q 020661 248 MAFNTNYKDTGLFGVYAVAK--PDCLDDLAYAIMYETTKLAYRVSEADVTRARNQVAASLPTYPGYLD 313 (323)
Q Consensus 248 ~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~l~~~is~~el~~ak~~~~~~~~~~~~~~~ 313 (323)
.+......+...+.+.+++. ++.++.-++.+.+.+.......++++++.-+..++..+.....+..
T Consensus 798 ~~~~r~~~G~~~~~i~Vqs~~~~~~le~rIe~fl~~~~~~i~~m~~e~Fe~~~~~lI~~~~ek~~~l~ 865 (974)
T KOG0959|consen 798 STGVRLNYGTVGLQITVQSEKSVDYLEERIESFLETFLEEIVEMSDEEFEKHKSGLIASKLEKPKNLS 865 (974)
T ss_pred eeeeeeecCcceeEEEEccCCCchHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhcCcchh
Confidence 77666555555566666544 3555555555555554444478999999999999998887666543
No 21
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=2.3e-11 Score=108.85 Aligned_cols=283 Identities=14% Similarity=0.136 Sum_probs=186.4
Q ss_pred ChHHHHHHHHhcCCeeeee-----ecceeEEEEEEeccccHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHhhCCh
Q 020661 10 TARDLEEEIENMGGHLNAY-----TSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEVEGQT 84 (323)
Q Consensus 10 ~~~~~~~~l~~~g~~~~~~-----t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (323)
+.+++.+.+....++.+.. +-++-+.+.+++.+++.+....++..++....||++++....+..+.++..+..+.
T Consensus 607 s~~~v~~~~~s~~id~si~~g~~G~~~~lvn~~Ikv~a~~Y~~~v~Wi~~~l~~~VfD~~Ri~~~~~~~l~~i~~~KRdg 686 (1022)
T KOG0961|consen 607 SADDVAKHFTSDLIDHSIQVGVSGLYDRLVNLRIKVGADKYPLLVKWIQIFLQGVVFDPSRIHQCAQKLLGEIRDRKRDG 686 (1022)
T ss_pred hHHHHHHHHHhhhhhhhhcccccccchhheeEEEEEccCCcchhHHHHHHHhhhhccCHHHHHHHHHHHHhhhhhhhcCc
Confidence 4556666665544443333 33567889999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhcCCCCCCCC--CCCCccccccCC------HHH----HHHHHHhhCCCCceEEEEEcCCC--HHHHHHH
Q 020661 85 EEVIFDHLHATAFQYTPLGRT--ILGPAQNIKTIT------KEH----LQNYIHTHYTAPRMVIAASGAVK--HEEVVEQ 150 (323)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~--~~g~~~~l~~~~------~~~----l~~~~~~~~~~~~~~l~i~G~~~--~~~~~~~ 150 (323)
...+.......+|+...+... ++-..+-++++. ++. ++...+-....+.+.+.++||++ ++....|
T Consensus 687 ~~vlss~~~~~lY~~~slk~s~d~L~~Ek~l~ei~~~v~n~~~~Il~~~e~mR~y~l~~n~~~ihvvgDI~kid~~~~~W 766 (1022)
T KOG0961|consen 687 CTVLSSAVASMLYGKNSLKISFDELVLEKLLEEISKDVMNNPEAILEKLEQMRSYALFSNGVNIHVVGDIDKIDPKMLSW 766 (1022)
T ss_pred cEehHHHHHHHHhcccchhhcccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhcceEEEEEeehhcCCccccCc
Confidence 888888888889986554432 221222222221 111 22222212345788899999986 1112211
Q ss_pred HHHHhcCCCC-C-CCcccc--cccCCCcc--c-cC-CceeeecCCCCceEEEEEeecC-CCCCcchHHHHHHHHHcCCCC
Q 020661 151 VKKLFTKLSA-D-PTTASQ--LVANEPAI--F-TG-SEVRIIDDDIPLAQFAVAFAGA-SWTDPDSIALMVMQAMLGSWN 221 (323)
Q Consensus 151 v~~~~~~~~~-~-~~~~~~--~~~~~~~~--~-~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~vl~~~l~~~~ 221 (323)
...... +. + |.-.-. .......+ + ++ ....+..+....+.+..+.|.. .|.+|+++...+++++|+.
T Consensus 767 -n~l~~~-~~~~nP~~~f~~tf~~~~~~s~e~gsssk~~~I~~p~sESs~l~~sip~~~~w~dpel~~~~l~~~YL~~-- 842 (1022)
T KOG0961|consen 767 -NWLQAD-PRFGNPGHQFSATFEAGENVSLELGSSSKELLIGVPGSESSFLYQSIPLDANWNDPELIPAMLFGQYLSQ-- 842 (1022)
T ss_pred -hhhhcC-cccCCchhhcccccccCcccceeccCCcceeEecCCCccccceeeecccccccCCcchhHHHHHHHHHHh--
Confidence 111111 11 0 110000 00000011 1 11 2223334444556666666654 6899999999999999974
Q ss_pred CCCCCCCCcccHHHHHhccccceehhcccccCCCCcccEEEEeecCcccHHHHHHHHHHHHHHhcc---CCCHHHHHHHH
Q 020661 222 KNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAY---RVSEADVTRAR 298 (323)
Q Consensus 222 ~~~~~~~~~~s~L~~~lre~g~~y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~---~is~~el~~ak 298 (323)
+..++|+.||..|+|||+.....+..+...+.|+...++. ++.+.-+..++++.. .|++.+++.||
T Consensus 843 --------~eGPfW~~IRG~GLAYGanm~~~~d~~~~~~~iyr~ad~~---kaye~~rdiV~~~vsG~~e~s~~~~egAk 911 (1022)
T KOG0961|consen 843 --------CEGPFWRAIRGDGLAYGANMFVKPDRKQITLSIYRCADPA---KAYERTRDIVRKIVSGSGEISKAEFEGAK 911 (1022)
T ss_pred --------cccchhhhhcccchhccceeEEeccCCEEEEEeecCCcHH---HHHHHHHHHHHHHhcCceeecHHHhccch
Confidence 7899999999999999999988887888888888777554 455555555566655 69999999999
Q ss_pred HHHHHccCC
Q 020661 299 NQVAASLPT 307 (323)
Q Consensus 299 ~~~~~~~~~ 307 (323)
...+..++.
T Consensus 912 ~s~~~~~~~ 920 (1022)
T KOG0961|consen 912 RSTVFEMMK 920 (1022)
T ss_pred HHHHHHHHH
Confidence 998876654
No 22
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=97.71 E-value=0.00055 Score=57.16 Aligned_cols=76 Identities=24% Similarity=0.375 Sum_probs=57.0
Q ss_pred ccccCCCCChHHHHHHHHhcCCeeeeeec-----------ceeEEEEEEeccccHHHHHHHHHHHhhCCCCChHHHHHHH
Q 020661 2 IFKGTEKRTARDLEEEIENMGGHLNAYTS-----------REQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRER 70 (323)
Q Consensus 2 ~f~Gt~~~~~~~~~~~l~~~g~~~~~~t~-----------~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~~~~~~ 70 (323)
...||+++++.++...+..+.|++++++. ...+.++++|+.++++++++++.+++.++.|++. +|.+
T Consensus 119 ~~lgT~~~sy~el~~~i~~~tGGis~~~~~~~~~~~~~~~~~~l~is~k~L~~~~~~~~~ll~eil~~~~f~d~--~rl~ 196 (248)
T PF08367_consen 119 GELGTKNYSYEELSNEIDLYTGGISFSIEVYTDYDDDDKYRPYLVISAKCLDEKLDEAFELLSEILTETDFDDK--ERLK 196 (248)
T ss_dssp CCS-BSSS-HHHHHHHHHHHSSEEEEEEEEEEEECTECCCEEEEEEEEEEEGGGHHHHHHHHHHHHHCB-TT-H--HHHH
T ss_pred HhCCCCCCCHHHHHHHHHHhCCCeEEEeeeccCCCCccceeEEEEEEEEeHhhhHHHHHHHHHHHHhccCCCcH--HHHH
Confidence 34699999999999999998777777652 2367889999999999999999999999999984 3555
Q ss_pred HHHHHHHHH
Q 020661 71 DVILREMEE 79 (323)
Q Consensus 71 ~~~~~~~~~ 79 (323)
+.+.+....
T Consensus 197 ~ll~~~~s~ 205 (248)
T PF08367_consen 197 ELLKELKSD 205 (248)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555444443
No 23
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=97.23 E-value=0.018 Score=54.97 Aligned_cols=206 Identities=8% Similarity=-0.040 Sum_probs=121.0
Q ss_pred cCCeeeeeecceeEEEEEEeccccHHHHHHHHHHHhhCCCCC--hHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHhcC
Q 020661 21 MGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFD--QARITRERDVILREMEEVEGQTEEVIFDHLHATAFQ 98 (323)
Q Consensus 21 ~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (323)
-|++++.+.......+.+.++++-+..++..+...+..|.-. ... .. ...|.....+.+.+.+ +
T Consensus 487 ~g~~~~~~~~~~~w~l~l~g~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~------------~~~~~~i~ir~ll~~l-p 552 (696)
T TIGR02110 487 AGVNGSWQATGASWQLLLNGPRSPMRAVFSVALALLALAAPMLAQPA-AN------------RASAPSIPIRQLLAAL-P 552 (696)
T ss_pred cCceeEEEEcCCeEEEEcCCCchhHHHHHHHHHHHHhCCCccccccc-cc------------CCCCccchHHHHHHhc-h
Confidence 399999999999999999999999999999998888887321 100 00 0001112222222111 1
Q ss_pred CCCCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHHHHhcCCCCCCCcccccccCCCccccC
Q 020661 99 YTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSADPTTASQLVANEPAIFTG 178 (323)
Q Consensus 99 ~~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (323)
.. +..+. ......... ..|- | ..... +...+..+|..+....+.+ ++...+
T Consensus 553 ~~-~~~~~-------~~~~~~~~~---~~~~----------~-~~~~~----~~~~l~~~~~~~~~~~~~~---~~~~~~ 603 (696)
T TIGR02110 553 ER-LLKSL-------PAQQDDWLA---ARWG----------A-ATQLA----QRVALQLSPGTADLARPTP---LPARLG 603 (696)
T ss_pred Hh-hccCc-------cccccchhh---hhcc----------c-chhHH----HHHHHHhCCCCCccCCCCC---CCcccc
Confidence 00 00000 000000000 1111 1 01122 3333333443222221111 121233
Q ss_pred CceeeecCCCCceEEEEEeecCCCCCcchHHHHHHHHHcCCCCCCCCCCCCcccHHHHHhc-cccceehhcccccCCCCc
Q 020661 179 SEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVG-INEIAESMMAFNTNYKDT 257 (323)
Q Consensus 179 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~~l~~~~~~~~~~~~~~s~L~~~lr-e~g~~y~~~~~~~~~~~~ 257 (323)
+.......+.....+.+-+|.|..+..+.+|.+++.+++. .++||+|| |.+++|-|+|.+....+.
T Consensus 604 ~~~~~~~~~~~e~alllf~p~~~~~~~~~aa~rlla~l~~-------------~~f~qrlRve~qlGY~v~~~~~~~~~~ 670 (696)
T TIGR02110 604 RGWVPLACDGGEQALLLFCPLPTADVASEAAWRLLAQLLE-------------PPFFQRLRVELQLGYVVFCRYRRVADR 670 (696)
T ss_pred cceEeccCCCCCcEEEEEecCCCCCHHHHHHHHHHHHHhc-------------hhHHHHHHHhhccceEEEEeeEEcCCc
Confidence 3333444455566777888888888888999999999995 79999999 899999999988877777
Q ss_pred ccEEEEeecCcccHHHHHHHHHHHH
Q 020661 258 GLFGVYAVAKPDCLDDLAYAIMYET 282 (323)
Q Consensus 258 ~~~~i~~~~~~~~~~~~~~~~~~~~ 282 (323)
..+.+-+++..-...+++..+...+
T Consensus 671 ~gllf~~QSP~~~~~~l~~h~~~fl 695 (696)
T TIGR02110 671 DGLLFALQSPDASARELLQHIKRFL 695 (696)
T ss_pred ceeEEEEeCCCCCHHHHHHHHHHHh
Confidence 6676777887777888887776654
No 24
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0033 Score=54.20 Aligned_cols=119 Identities=13% Similarity=0.098 Sum_probs=86.7
Q ss_pred CCeeeeeecceeEEEEEEeccccHHHHHHHHHHHhhC--CCCChHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCC
Q 020661 22 GGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQN--STFDQARITRERDVILREMEEVEGQTEEVIFDHLHATAFQY 99 (323)
Q Consensus 22 g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (323)
.+.-+++.+..-+.++++++|++..++++++..-+.+ -.+++++++|+|.++.+.+-+...+---.+.+.-+..+-.+
T Consensus 325 tAfnhsy~DtGlfgi~~s~~P~~a~~aveli~~e~~~~~~~v~~~el~RAK~qlkS~LlMNLESR~V~~EDvGRQVL~~g 404 (472)
T KOG2067|consen 325 TAFNHSYSDTGLFGIYASAPPQAANDAVELIAKEMINMAGGVTQEELERAKTQLKSMLLMNLESRPVAFEDVGRQVLTTG 404 (472)
T ss_pred hhhhccccCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcccccchhHHHHhHHHHhcc
Confidence 3444555666678899999999999999999988765 34889999999999999998865544444445555544433
Q ss_pred CCCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEcCCC
Q 020661 100 TPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVK 143 (323)
Q Consensus 100 ~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~ 143 (323)
. ..++-.-.+.|++++++|+.++.++.++. +.++.--||+.
T Consensus 405 ~--rk~p~e~~~~Ie~lt~~DI~rva~kvlt~-~p~va~~Gd~~ 445 (472)
T KOG2067|consen 405 E--RKPPDEFIKKIEQLTPSDISRVASKVLTG-KPSVAAFGDGT 445 (472)
T ss_pred C--cCCHHHHHHHHHhcCHHHHHHHHHHHhcC-CceeccCCccc
Confidence 2 22332345788999999999999999864 55666667764
No 25
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=96.56 E-value=0.041 Score=50.15 Aligned_cols=129 Identities=9% Similarity=0.081 Sum_probs=88.4
Q ss_pred HHHHHHHhcCCeeeeeec------ceeEEEEEEeccccHHHHHHHHHH----HhhCC--CCChHHHHHHHHHHHHHHHHh
Q 020661 13 DLEEEIENMGGHLNAYTS------REQTTYYAKVLDKDVNNALDILAD----ILQNS--TFDQARITRERDVILREMEEV 80 (323)
Q Consensus 13 ~~~~~l~~~g~~~~~~t~------~~~~~~~~~~~~~~l~~~l~ll~~----~l~~p--~~~~~~~~~~~~~~~~~~~~~ 80 (323)
-+...-+..|..+++++. .....+.+.+.+++.+.+.+.+.+ +.... -++++++++.+..+...+-..
T Consensus 292 Lf~~~re~~glay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~k~~~~~~~~~~ 371 (438)
T COG0612 292 LFQELREKRGLAYSVSSFSDFLSDSGLFSIYAGTAPENPEKTAELVEEILKALKKGLKGPFTEEELDAAKQLLIGLLLLS 371 (438)
T ss_pred HHHHHHHhcCceeeeccccccccccCCceEEEEecCCChhhHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhhc
Confidence 344444556766666632 123344445544443333333333 33333 388999999999999888888
Q ss_pred hCChHHHHHHHHHHHhcCCCCCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEcCCC
Q 020661 81 EGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVK 143 (323)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~ 143 (323)
.++|...+........+++..... ..-.+.|+.++.+++.++.++++.+.+.+++++|+..
T Consensus 372 ~~s~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~vt~~dv~~~a~~~~~~~~~~~~~~~p~~ 432 (438)
T COG0612 372 LDSPSSIAELLGQYLLLGGSLITL--EELLERIEAVTLEDVNAVAKKLLAPENLTIVVLGPEK 432 (438)
T ss_pred cCCHHHHHHHHHHHHHhcCCccCH--HHHHHHHHhcCHHHHHHHHHHhcCCCCcEEEEEcccc
Confidence 889998888888777775433222 2246889999999999999999999999999999865
No 26
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.03 Score=48.53 Aligned_cols=138 Identities=12% Similarity=0.086 Sum_probs=91.8
Q ss_pred ccCCCCChHHHHHHHHhc-CC--eeeeeecce---eEEEEEEe-ccccHHHHHHHHHHHhhC--CCCChHHHHHHHHHHH
Q 020661 4 KGTEKRTARDLEEEIENM-GG--HLNAYTSRE---QTTYYAKV-LDKDVNNALDILADILQN--STFDQARITRERDVIL 74 (323)
Q Consensus 4 ~Gt~~~~~~~~~~~l~~~-g~--~~~~~t~~~---~~~~~~~~-~~~~l~~~l~ll~~~l~~--p~~~~~~~~~~~~~~~ 74 (323)
.|++......+.+.+... ++ ..+.+|++. -..+++-| .+..++.++..+..-+.. ...++.+++|+|..+.
T Consensus 304 ~g~g~~~~s~La~~~~~~~l~~sfqsFnt~YkDTGLwG~y~V~~~~~~iddl~~~vl~eW~rL~~~vteaEV~RAKn~Lk 383 (467)
T KOG0960|consen 304 EGGGRNLSSRLAQKIQQDQLCHSFQSFNTSYKDTGLWGIYFVTDNLTMIDDLIHSVLKEWMRLATSVTEAEVERAKNQLK 383 (467)
T ss_pred cCCccCCccHHHHHHHHHHHHHHHhhhhcccccccceeEEEEecChhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 344444444444444332 22 133444443 23455556 556666666655554444 4689999999999999
Q ss_pred HHHHHhhCChHHHHHHHHHHHhcCCCCCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEcCCC
Q 020661 75 REMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVK 143 (323)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~ 143 (323)
..+-.........+.+.-+..+..+... ++..-.+.|++++.++++++..+++.-....++.+|+++
T Consensus 384 t~Lll~ldgttpi~ediGrqlL~~Grri--~l~El~~rId~vt~~~Vr~va~k~iyd~~iAia~vG~ie 450 (467)
T KOG0960|consen 384 TNLLLSLDGTTPIAEDIGRQLLTYGRRI--PLAELEARIDAVTAKDVREVASKYIYDKDIAIAAVGPIE 450 (467)
T ss_pred HHHHHHhcCCCchHHHHHHHHhhcCCcC--ChHHHHHHHhhccHHHHHHHHHHHhhcCCcceeeecccc
Confidence 9998866555555666666776665433 222346889999999999999999988889999999875
No 27
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=93.72 E-value=0.21 Score=37.96 Aligned_cols=115 Identities=13% Similarity=0.092 Sum_probs=73.7
Q ss_pred ecCCCCceEEEEEeecCCCCCc-c-hHHHHHHHHHcCCCCCCCCCCCCcc-cHHHHHhccccceehhcccccCCCCcccE
Q 020661 184 IDDDIPLAQFAVAFAGASWTDP-D-SIALMVMQAMLGSWNKNSVGGKHMG-SELAQRVGINEIAESMMAFNTNYKDTGLF 260 (323)
Q Consensus 184 ~~~~~~~~~v~~~~~~~~~~~~-~-~~~~~vl~~~l~~~~~~~~~~~~~~-s~L~~~lre~g~~y~~~~~~~~~~~~~~~ 260 (323)
..+..+.+.+.+.+++....++ + .....++..++..++ ...+ ..+.+.+...|..+.+.+. .-.+
T Consensus 6 ~~~~~~~~~~~l~~~~Gs~~e~~~~~G~a~ll~~l~~~gs------~~~~~~~l~~~l~~~G~~~~~~t~------~d~t 73 (149)
T PF00675_consen 6 EDPGSPVVSVSLVFKAGSRYEPPGKPGLAHLLEHLLFRGS------KKYSSDELQEELESLGASFNASTS------RDST 73 (149)
T ss_dssp ESTTSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBB------SSSBHHHHHHHHHHTTCEEEEEEE------SSEE
T ss_pred EcCCCCEEEEEEEEeeccCCCCCCCCchhhhhhhhccccc------chhhhhhhHHHhhhhccccceEec------ccce
Confidence 3446788888888887665443 2 245577777775431 1122 3455566666766644332 2344
Q ss_pred EEEeecCcccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCCCCCCC
Q 020661 261 GVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQVAASLPTYPGYL 312 (323)
Q Consensus 261 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~is~~el~~ak~~~~~~~~~~~~~~ 312 (323)
.+++.+..++...+++.+.+.+..- .|+++++++.|..+...+....+++
T Consensus 74 ~~~~~~~~~~~~~~l~~l~~~~~~P--~f~~~~~~~~r~~~~~ei~~~~~~~ 123 (149)
T PF00675_consen 74 SYSASVLSEDLEKALELLADMLFNP--SFDEEEFEREREQILQEIEEIKENP 123 (149)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHSB--GGCHHHHHHHHHHHHHHHHHHTTHH
T ss_pred EEEEEEecccchhHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHHCCH
Confidence 5566676788888877777666432 6999999999999998877665555
No 28
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=73.12 E-value=6.7 Score=20.75 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=17.3
Q ss_pred HHHHHhcc--CCCHHHHHHHHHHHH
Q 020661 280 YETTKLAY--RVSEADVTRARNQVA 302 (323)
Q Consensus 280 ~~~~~l~~--~is~~el~~ak~~~~ 302 (323)
+.++.+.. -||++|+++.|+.+.
T Consensus 6 ~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 6 EKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 34455555 699999999999875
No 29
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M44 (clan ME). The active site residues for members of this family and family M16 occur in the motif HXXEHProtein. The type example is the vaccinia virus-type metalloendopeptidase G1 from vaccinia virus, it is a metalloendopeptidase expressed by many Poxviridae which appears to play a role in the maturation of viral proteins.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0019067 viral assembly, maturation, egress, and release
Probab=71.63 E-value=78 Score=29.05 Aligned_cols=131 Identities=16% Similarity=0.185 Sum_probs=74.1
Q ss_pred eeeeeecceeEEEEEEecccc-HHHHHHHHHHHhhC-----CCCChHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHhc
Q 020661 24 HLNAYTSREQTTYYAKVLDKD-VNNALDILADILQN-----STFDQARITRERDVILREMEEVEGQTEEVIFDHLHATAF 97 (323)
Q Consensus 24 ~~~~~t~~~~~~~~~~~~~~~-l~~~l~ll~~~l~~-----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (323)
.-||+|.+.+..|=+...+.. .-+++.-+.+++.+ ..|+...++.....+..|+ +..+---.+++.+.- +.
T Consensus 56 ~ANASTaRsYMSFWC~si~g~~~~DAvrtliSWFF~~g~Lk~~F~~~~i~~hikELENEY--YFRnEvfHCmDvLtf-L~ 132 (590)
T PF03410_consen 56 LANASTARSYMSFWCKSIRGRTYIDAVRTLISWFFDNGKLKDNFSRSKIKNHIKELENEY--YFRNEVFHCMDVLTF-LG 132 (590)
T ss_pred hcccchhhhhhhhhhhhccCCChhHHHHHHHHHhhcCCcccccccHhHHHHHHHHHhhhh--hhhhhHHHHHHHHHH-hc
Confidence 348889999988888776644 56677777777755 3455544444444333333 234444555555443 45
Q ss_pred CCCCCCCCCCCCccccccCCH--HHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHHHHhcCCCCCCC
Q 020661 98 QYTPLGRTILGPAQNIKTITK--EHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSADPT 163 (323)
Q Consensus 98 ~~~~~~~~~~g~~~~l~~~~~--~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~~~~~~~~~~~~ 163 (323)
+|.-|.-.. ..-+..++. +-|.+=.++.-. .|++++| -.++ +.+..++++.||.+|.-|.
T Consensus 133 gGDLYNGGR---i~ML~~l~~i~~mL~~RM~~I~G-pniVIFV-k~l~-~~~l~lL~~TFGtLP~cP~ 194 (590)
T PF03410_consen 133 GGDLYNGGR---IDMLNNLNDIRNMLSNRMHRIIG-PNIVIFV-KELN-PNILSLLSNTFGTLPSCPL 194 (590)
T ss_pred CCcccCCch---HHHHhhhHHHHHHHHHHHHhhcC-CcEEEEE-eccC-HHHHHHHHHhcCCCCCCcc
Confidence 566665322 222222211 113333333333 4555555 4476 5578999999999998554
No 30
>PHA03081 putative metalloprotease; Provisional
Probab=70.64 E-value=45 Score=30.50 Aligned_cols=128 Identities=15% Similarity=0.194 Sum_probs=73.1
Q ss_pred eeeeecceeEEEEEEecccc-HHHHHHHHHHHhhCCC-----CChHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHhcC
Q 020661 25 LNAYTSREQTTYYAKVLDKD-VNNALDILADILQNST-----FDQARITRERDVILREMEEVEGQTEEVIFDHLHATAFQ 98 (323)
Q Consensus 25 ~~~~t~~~~~~~~~~~~~~~-l~~~l~ll~~~l~~p~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (323)
-|++|.+.+..|-+...... ..+++.-+.+++.+.. |+...++.....+.+|+ +..+-.-.+++.+.- +.+
T Consensus 57 anast~r~ymsfwc~sirg~~y~DAvrtliSWFF~~~~Lr~~F~~~~ik~~ikELENEY--YFRnEvfHCmDvLTf-L~g 133 (595)
T PHA03081 57 ANASTARSYMSFWCKSIRGRSYIDAIRTLISWFFDNGKLKDNFSLSKIRNHIKELENEY--YFRNEVFHCMDVLTF-LGG 133 (595)
T ss_pred ccchhhhhhHhHhhHhhcCCchHHHHHHHHHHhccCCccccccchhhHHHHHHHHhhhh--hhhhhhHHHHHHHHH-hcC
Confidence 47788888888877665533 5788888888887765 44433333333333332 334444555555543 455
Q ss_pred CCCCCCCCCCCccccccCCHHHHHHH----HHhhCCCCceEEEEEcCCCHHHHHHHHHHHhcCCCCCCC
Q 020661 99 YTPLGRTILGPAQNIKTITKEHLQNY----IHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSADPT 163 (323)
Q Consensus 99 ~~~~~~~~~g~~~~l~~~~~~~l~~~----~~~~~~~~~~~l~i~G~~~~~~~~~~v~~~~~~~~~~~~ 163 (323)
|.-|.-. -..-|..+ +++++. .++. ...|++++| -.++ +.+..++++.||.+|.-|.
T Consensus 134 GDLYNGG---Ri~ML~~l--~~i~~~L~~RM~~I-~GpniVIFV-k~ln-~~~l~lL~~TFGtLP~~P~ 194 (595)
T PHA03081 134 GDLYNGG---RIDMLDNL--NDVRDMLSNRMHRI-SGPNIVIFV-KELN-PNTLSLLNNTFGTLPSCPE 194 (595)
T ss_pred CcccCCc---hHHHHhhh--HHHHHHHHHHHHhh-cCCcEEEEE-eccC-HHHHHHHHHhcCCCCCCcc
Confidence 6666522 22223322 233332 2333 334555555 4476 4577999999999998554
No 31
>PF09186 DUF1949: Domain of unknown function (DUF1949); InterPro: IPR015269 Members of this entry are a set of functionally uncharacterised hypothetical bacterial proteins. They adopt a ferredoxin-like fold, with a beta-alpha-beta-beta-alpha-beta arrangement []. This entry contains the protein Impact, which is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. ; PDB: 2CVE_A 1VI7_A.
Probab=68.68 E-value=23 Score=21.27 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=39.5
Q ss_pred hHHHHHHHHhcCCeeeeeecceeEEEEEEeccccHHHHHHHHHHHh
Q 020661 11 ARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADIL 56 (323)
Q Consensus 11 ~~~~~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l 56 (323)
...+..+++.+++.+.-....+...+.+.++++..+.+...|.++.
T Consensus 8 ~~~v~~~l~~~~~~i~~~~y~~~V~~~v~v~~~~~~~f~~~l~~~t 53 (56)
T PF09186_consen 8 YGKVERLLEQNGIEIVDEDYTDDVTLTVAVPEEEVEEFKAQLTDLT 53 (56)
T ss_dssp HHHHHHHHHHTTTEEEEEEECTTEEEEEEEECCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCEEEcceecceEEEEEEECHHHHHHHHHHHHHHc
Confidence 5568888999999887777777799999999999999999988764
No 32
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=62.31 E-value=15 Score=28.09 Aligned_cols=42 Identities=10% Similarity=0.259 Sum_probs=30.1
Q ss_pred eeEEEEEEeccccHHHHHHHHHHHhhC---CCCChHHHHHHHHHH
Q 020661 32 EQTTYYAKVLDKDVNNALDILADILQN---STFDQARITRERDVI 73 (323)
Q Consensus 32 ~~~~~~~~~~~~~l~~~l~ll~~~l~~---p~~~~~~~~~~~~~~ 73 (323)
..+.+.+.+.+++++++++.+.+.+.. -.+++++|+++|..+
T Consensus 140 ~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~s~~el~~~k~~L 184 (184)
T PF05193_consen 140 GLFSISFQVTPENLDEAIEAILQELKRLREGGISEEELERAKNQL 184 (184)
T ss_dssp EEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred eEEEEEEEcCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 346677788888888877777776655 249999999988754
No 33
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=60.50 E-value=42 Score=21.84 Aligned_cols=53 Identities=15% Similarity=0.112 Sum_probs=42.1
Q ss_pred cCCCCChHHHHHHHHhcCCe-eeeeecceeEEEEEEeccccHHHHHHHHHHHhhC
Q 020661 5 GTEKRTARDLEEEIENMGGH-LNAYTSREQTTYYAKVLDKDVNNALDILADILQN 58 (323)
Q Consensus 5 Gt~~~~~~~~~~~l~~~g~~-~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~ 58 (323)
|..+++ .++.+.+.++++. ++-.++...+.+++.+..+.++.++.-|...+-+
T Consensus 13 G~~g~d-~~i~~~l~~~~v~ii~K~~nANtit~yl~~~~k~~~r~~~~Le~~~p~ 66 (71)
T cd04910 13 GEVGYD-LEILELLQRFKVSIIAKDTNANTITHYLAGSLKTIKRLTEDLENRFPN 66 (71)
T ss_pred CChhHH-HHHHHHHHHcCCeEEEEecCCCeEEEEEEcCHHHHHHHHHHHHHhCcc
Confidence 454554 4688889999887 6777888999999999999999988888777643
No 34
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=54.81 E-value=46 Score=20.17 Aligned_cols=45 Identities=13% Similarity=0.225 Sum_probs=35.2
Q ss_pred hHHHHHHHHhcCCeeeeeecceeEEEEEEeccccHHHHHHHHHHHh
Q 020661 11 ARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADIL 56 (323)
Q Consensus 11 ~~~~~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l 56 (323)
..++.+.+...+..+..-... ...+++..+.++.+.+...|++.+
T Consensus 17 ~~~i~~~L~~~~i~v~~i~~s-~~~is~~v~~~~~~~~~~~l~~~l 61 (63)
T cd04923 17 AAKMFKALAEAGINIEMISTS-EIKISCLVDEDDAEKAVRALHEAF 61 (63)
T ss_pred HHHHHHHHHHCCCCEEEEEcc-CCeEEEEEeHHHHHHHHHHHHHHh
Confidence 345788888889887666543 467888889899999999998876
No 35
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=54.43 E-value=36 Score=29.53 Aligned_cols=65 Identities=15% Similarity=0.119 Sum_probs=46.6
Q ss_pred ccccCCCCChHHHHHHHHhcCCeeeeeecceeEEEEEE-e--ccccHHHHHHHHHHHhhCCCCChHHHHHHHH
Q 020661 2 IFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAK-V--LDKDVNNALDILADILQNSTFDQARITRERD 71 (323)
Q Consensus 2 ~f~Gt~~~~~~~~~~~l~~~g~~~~~~t~~~~~~~~~~-~--~~~~l~~~l~ll~~~l~~p~~~~~~~~~~~~ 71 (323)
+|-|+-..++.++.+.+..+|+.++.+++.....+-+- - .+.++.++-++ .=|.+++++|-+...
T Consensus 239 v~TG~l~~~R~e~~~~~~~~G~~v~~sVs~~t~~lv~g~~~~~ssK~~kA~~~-----gi~ii~e~~f~~ll~ 306 (313)
T PRK06063 239 ALSAEVSRTHEELVERILHAGLAYSDSVDRDTSLVVCNDPAPEQGKGYHARQL-----GVPVLDEAAFLELLR 306 (313)
T ss_pred EEecCCCCCHHHHHHHHHHcCCEecCccccCccEEEECCCCCcccHHHHHHHc-----CCccccHHHHHHHHH
Confidence 56777777999999999999999999998865554332 1 22466666663 557888888766543
No 36
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=54.43 E-value=53 Score=20.71 Aligned_cols=40 Identities=13% Similarity=0.238 Sum_probs=29.7
Q ss_pred HHHHHHHhcCCeeeeeecceeEEEEEEeccccHHHHHHHHHH
Q 020661 13 DLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILAD 54 (323)
Q Consensus 13 ~~~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~ 54 (323)
.+...|...|.++..-+ .+..+++-.+.++++.++..|++
T Consensus 26 ~i~~~La~~~I~i~~is--S~~~~~ilV~~~~~~~A~~~L~~ 65 (65)
T PF13840_consen 26 KIFSALAEAGINIFMIS--SEISISILVKEEDLEKAVEALHE 65 (65)
T ss_dssp HHHHHHHHTTS-ECEEE--ESSEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEE--EeeeEEEEEeHHHHHHHHHHhcC
Confidence 45666777888765555 56677788889999999999874
No 37
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=54.07 E-value=50 Score=20.36 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=35.3
Q ss_pred hHHHHHHHHhcCCeeeeee-cceeEEEEEEeccccHHHHHHHHHHHhh
Q 020661 11 ARDLEEEIENMGGHLNAYT-SREQTTYYAKVLDKDVNNALDILADILQ 57 (323)
Q Consensus 11 ~~~~~~~l~~~g~~~~~~t-~~~~~~~~~~~~~~~l~~~l~ll~~~l~ 57 (323)
...+.+.+.+.|..+..-. +.....+++.++.++.+.++..|++.+.
T Consensus 18 ~~~i~~~l~~~~I~v~~i~~~~s~~~is~~v~~~~~~~~~~~lh~~~~ 65 (66)
T cd04922 18 AATFFSALAKANVNIRAIAQGSSERNISAVIDEDDATKALRAVHERFF 65 (66)
T ss_pred HHHHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHHHHHHHHHHHHh
Confidence 3457777888888765433 2244889999999999999999988774
No 38
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=52.76 E-value=50 Score=19.99 Aligned_cols=45 Identities=13% Similarity=0.240 Sum_probs=35.4
Q ss_pred hHHHHHHHHhcCCeeeeeecceeEEEEEEeccccHHHHHHHHHHHh
Q 020661 11 ARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADIL 56 (323)
Q Consensus 11 ~~~~~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l 56 (323)
..++.+.+.+.|..+...+.. ...+++..+.++.+.++..|+..+
T Consensus 17 ~~~i~~~L~~~~i~v~~i~~s-~~~is~~v~~~d~~~~~~~l~~~~ 61 (63)
T cd04936 17 AAKMFEALAEAGINIEMISTS-EIKISCLIDEDDAEKAVRALHEAF 61 (63)
T ss_pred HHHHHHHHHHCCCcEEEEEcc-CceEEEEEeHHHHHHHHHHHHHHh
Confidence 345788888899887766643 477888888899999999988876
No 39
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=50.73 E-value=57 Score=20.07 Aligned_cols=47 Identities=11% Similarity=0.191 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCeeeeeec-ceeEEEEEEeccccHHHHHHHHHHHhhC
Q 020661 12 RDLEEEIENMGGHLNAYTS-REQTTYYAKVLDKDVNNALDILADILQN 58 (323)
Q Consensus 12 ~~~~~~l~~~g~~~~~~t~-~~~~~~~~~~~~~~l~~~l~ll~~~l~~ 58 (323)
..+...|...|..+..-.. .....+++..+.++.+.++..|+..+.+
T Consensus 19 ~~i~~~L~~~~i~v~~i~~~~s~~~isf~v~~~d~~~~~~~lh~~~~~ 66 (66)
T cd04916 19 ARATAALAKAGINIRMINQGSSEISIMIGVHNEDADKAVKAIYEEFFN 66 (66)
T ss_pred HHHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHHHHHHHHHHHHhC
Confidence 4577778888887654432 2347788999999999999999988753
No 40
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=50.70 E-value=58 Score=20.13 Aligned_cols=47 Identities=15% Similarity=0.168 Sum_probs=35.0
Q ss_pred hHHHHHHHHhcCCeeeeee-cceeEEEEEEeccccHHHHHHHHHHHhh
Q 020661 11 ARDLEEEIENMGGHLNAYT-SREQTTYYAKVLDKDVNNALDILADILQ 57 (323)
Q Consensus 11 ~~~~~~~l~~~g~~~~~~t-~~~~~~~~~~~~~~~l~~~l~ll~~~l~ 57 (323)
..++.+.|.+.|..+..-. +.....+++..+.++.+.++..|++.+.
T Consensus 18 ~~~if~~L~~~~I~v~~i~q~~s~~~isf~v~~~~~~~a~~~lh~~~~ 65 (66)
T cd04919 18 AGRMFTTLADHRINIEMISQGASEINISCVIDEKDAVKALNIIHTNLL 65 (66)
T ss_pred HHHHHHHHHHCCCCEEEEEecCccceEEEEEeHHHHHHHHHHHHHHHh
Confidence 3457778888888764332 2244888888999999999999998764
No 41
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=49.98 E-value=52 Score=24.14 Aligned_cols=66 Identities=9% Similarity=-0.016 Sum_probs=41.3
Q ss_pred ccHHHHHhccccceehhcccccCCCCcccEEEEe---ecCcccHHHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHH
Q 020661 231 GSELAQRVGINEIAESMMAFNTNYKDTGLFGVYA---VAKPDCLDDLAYAIMYETTKLAY-RVSEADVTRARNQVAA 303 (323)
Q Consensus 231 ~s~L~~~lre~g~~y~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~l~~-~is~~el~~ak~~~~~ 303 (323)
.++-|+.|.+.|..|.. ++.|.|+--- ..+..+...+...+...+..+.. +++.+++-.....+..
T Consensus 52 v~raY~eLE~eG~i~t~-------rg~G~fV~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~G~s~eei~~~~~~~~~ 121 (125)
T COG1725 52 VQRAYQELEREGIVETK-------RGKGTFVTEDAKEILDQLKRELAEEELEEFIEEAKALGLSLEEILELLKEIYE 121 (125)
T ss_pred HHHHHHHHHHCCCEEEe-------cCeeEEEcCCchhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 46788888888988853 3444443110 11123444555666667777777 9999998776665543
No 42
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=48.79 E-value=48 Score=28.05 Aligned_cols=37 Identities=24% Similarity=0.341 Sum_probs=20.9
Q ss_pred ccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHH
Q 020661 114 KTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQ 150 (323)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~ 150 (323)
+.++++++++..+..-.++++.+-++|+++.+.+...
T Consensus 215 DNm~~e~~~~av~~l~~~~~~~lEaSGgIt~~ni~~y 251 (280)
T COG0157 215 DNMSPEELKEAVKLLGLAGRALLEASGGITLENIREY 251 (280)
T ss_pred cCCCHHHHHHHHHHhccCCceEEEEeCCCCHHHHHHH
Confidence 4455566666665554445566666666665555444
No 43
>PF07939 DUF1685: Protein of unknown function (DUF1685); InterPro: IPR012881 The members of this family are hypothetical eukaryotic proteins of unknown function. The region in question is approximately 100 amino acid residues long.
Probab=46.80 E-value=12 Score=23.55 Aligned_cols=33 Identities=15% Similarity=0.141 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHHccCCCCCCCCcccccccc
Q 020661 289 VSEADVTRARNQVAASLPTYPGYLDICLLPTFV 321 (323)
Q Consensus 289 is~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~ 321 (323)
+|+++|++.|..+--.|-+..+....+|.+|+=
T Consensus 1 lTd~dldELkGc~dLGFgF~~~~~~p~L~~tlP 33 (64)
T PF07939_consen 1 LTDDDLDELKGCIDLGFGFDEEDLDPRLCDTLP 33 (64)
T ss_pred CcHhHHHHHhhhhhhccccCccccChHHHhhhH
Confidence 578889998888888888876666677766653
No 44
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.28 E-value=69 Score=19.67 Aligned_cols=45 Identities=11% Similarity=0.047 Sum_probs=34.2
Q ss_pred HHHHHHHHhcCCeeeeeec-ceeEEEEEEeccccHHHHHHHHHHHh
Q 020661 12 RDLEEEIENMGGHLNAYTS-REQTTYYAKVLDKDVNNALDILADIL 56 (323)
Q Consensus 12 ~~~~~~l~~~g~~~~~~t~-~~~~~~~~~~~~~~l~~~l~ll~~~l 56 (323)
..+.+.+...|..+..-.. .....+++..+.++.+.++..|++.+
T Consensus 19 ~~i~~~L~~~~I~v~~i~q~~s~~~isf~i~~~~~~~~~~~Lh~~~ 64 (66)
T cd04924 19 GRVFGALGKAGINVIMISQGSSEYNISFVVAEDDGWAAVKAVHDEF 64 (66)
T ss_pred HHHHHHHHHCCCCEEEEEecCccceEEEEEeHHHHHHHHHHHHHHh
Confidence 4577778888887654432 23477889999999999999998876
No 45
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.13 E-value=50 Score=28.08 Aligned_cols=42 Identities=24% Similarity=0.342 Sum_probs=31.1
Q ss_pred cccccCCHHHHHHHHHhhCC---CCceEEEEEcCCCHHHHHHHHH
Q 020661 111 QNIKTITKEHLQNYIHTHYT---APRMVIAASGAVKHEEVVEQVK 152 (323)
Q Consensus 111 ~~l~~~~~~~l~~~~~~~~~---~~~~~l~i~G~~~~~~~~~~v~ 152 (323)
=.+++++++++++.....-. +.++.+.++|+++.+.+.+.++
T Consensus 206 I~LDn~~~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ni~~yA~ 250 (278)
T PRK08385 206 IMLDNMTPEEIREVIEALKREGLRERVKIEVSGGITPENIEEYAK 250 (278)
T ss_pred EEECCCCHHHHHHHHHHHHhcCcCCCEEEEEECCCCHHHHHHHHH
Confidence 34577788888888775422 3478899999999888877665
No 46
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=45.22 E-value=24 Score=27.46 Aligned_cols=44 Identities=25% Similarity=0.380 Sum_probs=34.1
Q ss_pred CccccccCCHHHHHHHHHhhC-CCCceEEEEEcCCCHHHHHHHHH
Q 020661 109 PAQNIKTITKEHLQNYIHTHY-TAPRMVIAASGAVKHEEVVEQVK 152 (323)
Q Consensus 109 ~~~~l~~~~~~~l~~~~~~~~-~~~~~~l~i~G~~~~~~~~~~v~ 152 (323)
..=.+++.+++++++..+..- .+.++.+.++|+++.+.+.+..+
T Consensus 102 d~I~lD~~~~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~ya~ 146 (169)
T PF01729_consen 102 DIIMLDNMSPEDLKEAVEELRELNPRVKIEASGGITLENIAEYAK 146 (169)
T ss_dssp SEEEEES-CHHHHHHHHHHHHHHTTTSEEEEESSSSTTTHHHHHH
T ss_pred CEEEecCcCHHHHHHHHHHHhhcCCcEEEEEECCCCHHHHHHHHh
Confidence 445678999999999998542 24569999999999998888765
No 47
>KOG3432 consensus Vacuolar H+-ATPase V1 sector, subunit F [Energy production and conversion]
Probab=43.88 E-value=63 Score=22.87 Aligned_cols=47 Identities=13% Similarity=0.142 Sum_probs=39.1
Q ss_pred ccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHHHHhcCCCC
Q 020661 114 KTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSA 160 (323)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~~~~~~~~~ 160 (323)
++.+.+++++.++++.....+.++++..+-.+-++..+..+-..+|.
T Consensus 43 ~~Tt~~eiedaF~~f~~RdDIaIiLInq~~Ae~iR~~vD~h~~~vPA 89 (121)
T KOG3432|consen 43 SKTTVEEIEDAFKSFTARDDIAIILINQFIAEMIRDRVDAHTQAVPA 89 (121)
T ss_pred ccCCHHHHHHHHHhhccccCeEEEEEhHHHHHHHHHHHHhccccCCe
Confidence 36788999999999999999999998888778888888877665554
No 48
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.25 E-value=65 Score=27.65 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=25.6
Q ss_pred ccccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHH
Q 020661 112 NIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVK 152 (323)
Q Consensus 112 ~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~ 152 (323)
.+++++++++++..... +.+..+-++|+++.+.+.+..+
T Consensus 230 mLDnmspe~l~~av~~~--~~~~~lEaSGGIt~~ni~~yA~ 268 (294)
T PRK06978 230 LLDNFTLDMMREAVRVT--AGRAVLEVSGGVNFDTVRAFAE 268 (294)
T ss_pred EECCCCHHHHHHHHHhh--cCCeEEEEECCCCHHHHHHHHh
Confidence 34566777777776533 3467777777777777666554
No 49
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=42.07 E-value=62 Score=27.69 Aligned_cols=39 Identities=18% Similarity=0.220 Sum_probs=26.5
Q ss_pred ccccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHH
Q 020661 112 NIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVK 152 (323)
Q Consensus 112 ~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~ 152 (323)
.+++++++++++..... +.+..+-++|+++.+.+.+.+.
T Consensus 222 mLDnmspe~l~~av~~~--~~~~~leaSGGI~~~ni~~yA~ 260 (290)
T PRK06559 222 MLDNMSLEQIEQAITLI--AGRSRIECSGNIDMTTISRFRG 260 (290)
T ss_pred EECCCCHHHHHHHHHHh--cCceEEEEECCCCHHHHHHHHh
Confidence 45667777777777633 3467777888888777766654
No 50
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=41.54 E-value=65 Score=27.70 Aligned_cols=40 Identities=20% Similarity=0.308 Sum_probs=29.4
Q ss_pred cccccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHH
Q 020661 111 QNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVK 152 (323)
Q Consensus 111 ~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~ 152 (323)
=.+++.++++++++.+.. +.+..+-++|+++.+.+.+..+
T Consensus 232 I~LDn~s~e~~~~av~~~--~~~~~ieaSGGI~~~ni~~yA~ 271 (296)
T PRK09016 232 IMLDNFTTEQMREAVKRT--NGRALLEVSGNVTLETLREFAE 271 (296)
T ss_pred EEeCCCChHHHHHHHHhh--cCCeEEEEECCCCHHHHHHHHh
Confidence 345677888888888743 3478888888888887777654
No 51
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=40.96 E-value=89 Score=19.76 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCeeeeeecceeEEEEEEeccccHHHHHHHHHHHhhCCC
Q 020661 12 RDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNST 60 (323)
Q Consensus 12 ~~~~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~ 60 (323)
.++...|.+.|+.+..-... ...++++++..+++.+.+++.++=.+|.
T Consensus 17 a~if~~La~~~InvDmI~~~-~~~isFtv~~~d~~~~~~il~~~~~~~~ 64 (67)
T cd04914 17 QRVFKALANAGISVDLINVS-PEEVIFTVDGEVAEKAVDILEKMGLDPS 64 (67)
T ss_pred HHHHHHHHHcCCcEEEEEec-CCCEEEEEchhhHHHHHHHHHHcCCceE
Confidence 45888899999876666322 1158889998999998888777765554
No 52
>PF12122 DUF3582: Protein of unknown function (DUF3582); InterPro: IPR022732 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the N-terminal domain of membrane-bound serine endopeptidases belonging to MEROPS peptidase family S54 (rhomboid-1, clan ST). This domain contains a conserved ASW sequence motif and a single completely conserved residue F that may be functionally important. The tertiary structure of the GlpG protein from Escherichia coli has been determined []. The GlpG protein has six transmembrane domains (other members of the family are predicted to have seven), with the N- and C-terminal ends anchored in the cytoplasm. One transmembrane domain is shorter than the rest, creating an internal, aqueous cavity just below the membrane surface and it is here were proteolysis occurs. There is also a membrane-embedded loop between the first and second transmembrane domains which is postulated to act as a gate controlling substrate access to the active site. No other family of serine peptidases is known to have active site residues within transmembrane domains (although transmembrane active sites are known for aspartic peptidase and metallopeptidases), and the GlpG protein has the type structure for clan ST.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=40.87 E-value=1e+02 Score=21.62 Aligned_cols=49 Identities=16% Similarity=0.218 Sum_probs=33.4
Q ss_pred hHHHHHHHHhcCCeeeeeeccee-EEEEEEeccccHHHHHHHHHHHhhCCC
Q 020661 11 ARDLEEEIENMGGHLNAYTSREQ-TTYYAKVLDKDVNNALDILADILQNST 60 (323)
Q Consensus 11 ~~~~~~~l~~~g~~~~~~t~~~~-~~~~~~~~~~~l~~~l~ll~~~l~~p~ 60 (323)
...+.++|...|+.+.+....+. ..+-+. ..++++.+-..+...+.+|.
T Consensus 13 AqaF~DYl~sqgI~~~i~~~~~~~~~lwl~-de~~~~~a~~el~~Fl~nP~ 62 (101)
T PF12122_consen 13 AQAFIDYLASQGIELQIEPEGQGQFALWLH-DEEHLEQAEQELEEFLQNPN 62 (101)
T ss_dssp HHHHHHHHHHTT--EEEE-SSSE--EEEES--GGGHHHHHHHHHHHHHS-S
T ss_pred HHHHHHHHHHCCCeEEEEECCCCceEEEEe-CHHHHHHHHHHHHHHHHCCC
Confidence 34578899999988888865544 444444 67889999999999999984
No 53
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=38.08 E-value=2.3e+02 Score=23.47 Aligned_cols=109 Identities=13% Similarity=0.125 Sum_probs=63.9
Q ss_pred CceEEEEEeecCCCCCcchHHHHHHHHHcCCCCCCCCCCCCcccHHHHHhcc-cc-ceehhccccc---CCCCcccEEEE
Q 020661 189 PLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGI-NE-IAESMMAFNT---NYKDTGLFGVY 263 (323)
Q Consensus 189 ~~~~v~~~~~~~~~~~~~~~~~~vl~~~l~~~~~~~~~~~~~~s~L~~~lre-~g-~~y~~~~~~~---~~~~~~~~~i~ 263 (323)
.-+++.+.|+....+..+..-+.++..+|+.- |.+..-...|-..+.. -| +..++.+... ...-...|.+.
T Consensus 90 GI~Y~~l~fdl~~l~~e~l~yl~Ll~~ll~~l----gT~~~sy~el~~~i~~~tGGis~~~~~~~~~~~~~~~~~~l~is 165 (248)
T PF08367_consen 90 GIVYVRLYFDLSDLPEEDLPYLPLLTDLLGEL----GTKNYSYEELSNEIDLYTGGISFSIEVYTDYDDDDKYRPYLVIS 165 (248)
T ss_dssp TEEEEEEEEE-TTS-CCCHCCHHHHHHHCCCS-----BSSS-HHHHHHHHHHHSSEEEEEEEEEEEECTECCCEEEEEEE
T ss_pred CeEEEEEEecCCCCCHHHHHhHHHHHHHHHhC----CCCCCCHHHHHHHHHHhCCCeEEEeeeccCCCCccceeEEEEEE
Confidence 46789999999888888899999999999852 2222222334444442 23 3333322221 11223556677
Q ss_pred eecCcccHHHHHHHHHHHHHHhccCCCHHH-HHHHHHHHHH
Q 020661 264 AVAKPDCLDDLAYAIMYETTKLAYRVSEAD-VTRARNQVAA 303 (323)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~l~~~is~~e-l~~ak~~~~~ 303 (323)
+.+-.++++++++.+.+.+... .|++.+ +.....+...
T Consensus 166 ~k~L~~~~~~~~~ll~eil~~~--~f~d~~rl~~ll~~~~s 204 (248)
T PF08367_consen 166 AKCLDEKLDEAFELLSEILTET--DFDDKERLKELLKELKS 204 (248)
T ss_dssp EEEEGGGHHHHHHHHHHHHHCB---TT-HHHHHHHHHHHHH
T ss_pred EEeHhhhHHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHH
Confidence 7777899999999998888554 676664 4444443333
No 54
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=38.06 E-value=99 Score=19.16 Aligned_cols=45 Identities=18% Similarity=0.236 Sum_probs=34.8
Q ss_pred hHHHHHHHHhcCCeeeeeecceeEEEEEEeccccHHHHHHHHHHHh
Q 020661 11 ARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADIL 56 (323)
Q Consensus 11 ~~~~~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l 56 (323)
...+...|...|..+...+. ....+++-.+.++.+.++..|++.+
T Consensus 18 ~~~if~aL~~~~I~v~~~~~-Se~~is~~v~~~~~~~av~~Lh~~f 62 (64)
T cd04937 18 MAKIVGALSKEGIEILQTAD-SHTTISCLVSEDDVKEAVNALHEAF 62 (64)
T ss_pred HHHHHHHHHHCCCCEEEEEc-CccEEEEEEcHHHHHHHHHHHHHHh
Confidence 34567778888988865554 5677888888999999999998876
No 55
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=37.15 E-value=72 Score=27.63 Aligned_cols=67 Identities=12% Similarity=0.241 Sum_probs=45.9
Q ss_pred ccccCC-CCChHHHHHHHHhcCCeeeeeecceeEEEEEE----------eccccHHHHHHHHHHHhhCCCCChHHHHH
Q 020661 2 IFKGTE-KRTARDLEEEIENMGGHLNAYTSREQTTYYAK----------VLDKDVNNALDILADILQNSTFDQARITR 68 (323)
Q Consensus 2 ~f~Gt~-~~~~~~~~~~l~~~g~~~~~~t~~~~~~~~~~----------~~~~~l~~~l~ll~~~l~~p~~~~~~~~~ 68 (323)
+|-|+- .+++.++.+.+..+|+.+..+++.....+-+- .+..+++++-++...-..=+.+++++|-+
T Consensus 227 vfTG~l~~~~R~~~~~~~~~~Gg~v~~sVs~~t~~lV~G~~~~~~~~~~~~~~K~~kA~~l~~~g~~i~ii~E~~f~~ 304 (309)
T PRK06195 227 VFTGGLASMTRDEAMILVRRLGGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAIDLKKKGQNIKFLNEEEFLQ 304 (309)
T ss_pred EEccccCCCCHHHHHHHHHHhCCEecCCcccCceEEEECCCcchhhcccCcChHHHHHHHHHhCCCCcEEecHHHHHH
Confidence 566775 57999999999999999988888755544331 23456777777765543335577766543
No 56
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=36.64 E-value=86 Score=26.74 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=27.5
Q ss_pred cccccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHH
Q 020661 111 QNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVK 152 (323)
Q Consensus 111 ~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~ 152 (323)
=.+++++++++++..... +++..+-++|+++.+.+.+.++
T Consensus 217 ImLDn~s~e~l~~av~~~--~~~~~leaSGgI~~~ni~~yA~ 256 (281)
T PRK06543 217 IMLDNFSLDDLREGVELV--DGRAIVEASGNVNLNTVGAIAS 256 (281)
T ss_pred EEECCCCHHHHHHHHHHh--CCCeEEEEECCCCHHHHHHHHh
Confidence 345667778888877643 3456777888888777766654
No 57
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=34.88 E-value=1.2e+02 Score=19.10 Aligned_cols=45 Identities=20% Similarity=0.070 Sum_probs=34.2
Q ss_pred HHHHHHHhcCCee-eeeecceeEEEEEEeccccHHHHHHHHHHHhh
Q 020661 13 DLEEEIENMGGHL-NAYTSREQTTYYAKVLDKDVNNALDILADILQ 57 (323)
Q Consensus 13 ~~~~~l~~~g~~~-~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~ 57 (323)
.+.+.|...|+.+ -.+++.....+++-.+.++.+.++..|++.+.
T Consensus 20 ki~~~L~~~~I~v~~i~~~~s~~~is~~V~~~~~~~av~~Lh~~f~ 65 (66)
T cd04915 20 RGLAALAEAGIEPIAAHQSMRNVDVQFVVDRDDYDNAIKALHAALV 65 (66)
T ss_pred HHHHHHHHCCCCEEEEEecCCeeEEEEEEEHHHHHHHHHHHHHHHh
Confidence 4556667778775 33445556889999999999999999998774
No 58
>PF10369 ALS_ss_C: Small subunit of acetolactate synthase; InterPro: IPR019455 This entry represents the C-terminal domain of the small subunit of acetolactate synthase (the N-terminal domain being an ACT domain). Acetolactate synthase is a tetrameric enzyme, composed of two large and two small subunits, which catalyses the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides []. ; PDB: 2F1F_B 2FGC_A 2PC6_A.
Probab=34.82 E-value=1.2e+02 Score=19.92 Aligned_cols=44 Identities=7% Similarity=0.076 Sum_probs=33.6
Q ss_pred ChHHHHHHHHhcCCeeeeeecceeEEEEEEeccccHHHHHHHHHH
Q 020661 10 TARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILAD 54 (323)
Q Consensus 10 ~~~~~~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~ 54 (323)
+..++.+.++..++.+ +..+.+++.+.+++.+++++.++++|..
T Consensus 15 ~r~ei~~l~~~f~a~i-vd~~~~~~iie~tG~~~kid~fi~~l~~ 58 (75)
T PF10369_consen 15 NRSEILQLAEIFRARI-VDVSPDSIIIELTGTPEKIDAFIKLLKP 58 (75)
T ss_dssp HHHHHHHHHHHTT-EE-EEEETTEEEEEEEE-HHHHHHHHHHSTG
T ss_pred CHHHHHHHHHHhCCEE-EEECCCEEEEEEcCCHHHHHHHHHHhhh
Confidence 4667888888888763 4456678999999999999999998765
No 59
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=33.86 E-value=67 Score=25.61 Aligned_cols=38 Identities=11% Similarity=0.149 Sum_probs=31.4
Q ss_pred cccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHH
Q 020661 113 IKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVK 152 (323)
Q Consensus 113 l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~ 152 (323)
..=++.+++.++.+. .|.++.++++|.-.++++.+.+.
T Consensus 130 ~gli~~eevi~~L~~--rp~~~evVlTGR~~p~~Lie~AD 167 (191)
T PRK05986 130 YGYLDVEEVLEALNA--RPGMQHVVITGRGAPRELIEAAD 167 (191)
T ss_pred CCCccHHHHHHHHHc--CCCCCEEEEECCCCCHHHHHhCc
Confidence 344678999999975 79999999999988888887654
No 60
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=33.79 E-value=1.2e+02 Score=25.94 Aligned_cols=40 Identities=15% Similarity=0.275 Sum_probs=24.3
Q ss_pred cccCCHHHHHHHHHhhC-CCCceEEEEEcCCCHHHHHHHHH
Q 020661 113 IKTITKEHLQNYIHTHY-TAPRMVIAASGAVKHEEVVEQVK 152 (323)
Q Consensus 113 l~~~~~~~l~~~~~~~~-~~~~~~l~i~G~~~~~~~~~~v~ 152 (323)
+++++++++++..+..- ...+..+.++|+++++.+.+...
T Consensus 214 lDn~~~e~l~~~v~~l~~~~~~~~leasGGI~~~ni~~ya~ 254 (277)
T TIGR01334 214 LDKFTPQQLHHLHERLKFFDHIPTLAAAGGINPENIADYIE 254 (277)
T ss_pred ECCCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHh
Confidence 45566677777666542 13466677777777766665543
No 61
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=33.77 E-value=1.2e+02 Score=26.02 Aligned_cols=42 Identities=12% Similarity=0.210 Sum_probs=28.7
Q ss_pred cccccCCHHHHHHHHHhhC-CCCceEEEEEcCCCHHHHHHHHH
Q 020661 111 QNIKTITKEHLQNYIHTHY-TAPRMVIAASGAVKHEEVVEQVK 152 (323)
Q Consensus 111 ~~l~~~~~~~l~~~~~~~~-~~~~~~l~i~G~~~~~~~~~~v~ 152 (323)
=.+++++++++++.....- ...+..+-++|+++.+.+.+.++
T Consensus 223 I~LDnm~~e~vk~av~~~~~~~~~v~ieaSGGI~~~ni~~yA~ 265 (289)
T PRK07896 223 VLLDNFPVWQTQEAVQRRDARAPTVLLESSGGLTLDTAAAYAE 265 (289)
T ss_pred EEeCCCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHh
Confidence 3456777888888876421 23567788888888887777654
No 62
>PHA01346 hypothetical protein
Probab=33.57 E-value=85 Score=17.84 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=18.6
Q ss_pred HHhhCCCCChHHHHHHHHHHHHHHH
Q 020661 54 DILQNSTFDQARITRERDVILREME 78 (323)
Q Consensus 54 ~~l~~p~~~~~~~~~~~~~~~~~~~ 78 (323)
+.+.+|.|+++.+..+...++..+.
T Consensus 25 savsdpdfsqekihaeldsllrkls 49 (53)
T PHA01346 25 SAVSDPDFSQEKIHAELDSLLRKLS 49 (53)
T ss_pred hhcCCCCccHHHHHHHHHHHHHHHH
Confidence 4567899999888887777766653
No 63
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=33.45 E-value=1.1e+02 Score=18.28 Aligned_cols=46 Identities=11% Similarity=0.127 Sum_probs=34.4
Q ss_pred HHHHHHHHhcCCeeeeeec-ceeEEEEEEeccccHHHHHHHHHHHhh
Q 020661 12 RDLEEEIENMGGHLNAYTS-REQTTYYAKVLDKDVNNALDILADILQ 57 (323)
Q Consensus 12 ~~~~~~l~~~g~~~~~~t~-~~~~~~~~~~~~~~l~~~l~ll~~~l~ 57 (323)
..+.+.+.+.+..+...+. .....+.+..+.++.+.++..|++.+.
T Consensus 18 ~~i~~~l~~~~i~v~~i~~~~~~~~i~~~v~~~~~~~~~~~l~~~~~ 64 (65)
T cd04892 18 ARIFSALAEAGINIIMISQGSSEVNISFVVDEDDADKAVKALHEEFF 64 (65)
T ss_pred HHHHHHHHHCCCcEEEEEcCCCceeEEEEEeHHHHHHHHHHHHHHHh
Confidence 3577778888887665543 234778888898999999999888763
No 64
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=33.35 E-value=1.5e+02 Score=26.16 Aligned_cols=52 Identities=15% Similarity=0.266 Sum_probs=39.1
Q ss_pred CCCCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEcCCC--HHHHHHHHHHHhc
Q 020661 99 YTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVK--HEEVVEQVKKLFT 156 (323)
Q Consensus 99 ~~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~--~~~~~~~v~~~~~ 156 (323)
-|||.+.-.|. +++-...++.-.+++ |++..++.+||++ ++++..-++..|+
T Consensus 49 FHPYCNAGGGG----ErVLW~Avr~~q~k~--~n~~~viYsGD~n~t~~~IL~k~k~~F~ 102 (465)
T KOG1387|consen 49 FHPYCNAGGGG----ERVLWKAVRITQRKF--PNNVIVIYSGDFNVTPENILNKVKNKFD 102 (465)
T ss_pred ecccccCCCCc----ceehhHHHHHHHHhC--CCceEEEEeCCCCCCHHHHHHHHHHhcC
Confidence 46777665444 456677777776665 7888999999965 8899999988886
No 65
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=32.29 E-value=1.1e+02 Score=26.20 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=23.8
Q ss_pred ccccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHH
Q 020661 112 NIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVK 152 (323)
Q Consensus 112 ~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~ 152 (323)
.+++.+++++++..... +.+..+-++|+++.+.+.+..+
T Consensus 219 ~LDn~s~e~l~~av~~~--~~~~~leaSGGI~~~ni~~yA~ 257 (281)
T PRK06106 219 LLDNMTPDTLREAVAIV--AGRAITEASGRITPETAPAIAA 257 (281)
T ss_pred EeCCCCHHHHHHHHHHh--CCCceEEEECCCCHHHHHHHHh
Confidence 34566667777776633 2344467777777776666554
No 66
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=31.51 E-value=35 Score=21.68 Aligned_cols=39 Identities=26% Similarity=0.324 Sum_probs=24.8
Q ss_pred EeecCcccHHHHHHHHHHHHHH----hcc--CCCHHHHHHHHHHH
Q 020661 263 YAVAKPDCLDDLAYAIMYETTK----LAY--RVSEADVTRARNQV 301 (323)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~----l~~--~is~~el~~ak~~~ 301 (323)
...++++.+..+++.+.+.... +.+ ++|++++++.|..+
T Consensus 23 ~~~~~~e~l~~~l~~i~~~yGs~e~Yl~~~lgl~~~~i~~Lr~~l 67 (68)
T PF13348_consen 23 LMSVRPEYLEAALDAIDERYGSVENYLREELGLSEEDIERLRERL 67 (68)
T ss_dssp HHS--HHHHHHHHHHHHHHHSSHHHHHHHT-T--HHHHHHHHHHH
T ss_pred hcCccHHHHHHHHHHHHHHcCCHHHHHHHcCCCCHHHHHHHHHHc
Confidence 4456677888888887765422 223 89999999998875
No 67
>PF03197 FRD2: Bacteriophage FRD2 protein; InterPro: IPR004885 This is group of bacteriophage proteins has no known function.
Probab=30.53 E-value=86 Score=21.66 Aligned_cols=27 Identities=7% Similarity=0.204 Sum_probs=24.1
Q ss_pred cccEEEEeecCcccHHHHHHHHHHHHH
Q 020661 257 TGLFGVYAVAKPDCLDDLAYAIMYETT 283 (323)
Q Consensus 257 ~~~~~i~~~~~~~~~~~~~~~~~~~~~ 283 (323)
.|.-.|++..+..++++++..+++.++
T Consensus 75 ~gvt~IHciVde~NvdeIIeLl~kTFk 101 (102)
T PF03197_consen 75 SGVTKIHCIVDENNVDEIIELLQKTFK 101 (102)
T ss_pred cCceEEEEEEccCCHHHHHHHHHHHhc
Confidence 577889999999999999999998775
No 68
>PF04444 Dioxygenase_N: Catechol dioxygenase N terminus; InterPro: IPR007535 This domain is the N-terminal region of catechol, chlorocatechol or hydroxyquinol 1,2-dioxygenase proteins. This region is always found adjacent to the dioxygenase domain (IPR000627 from INTERPRO). Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0005506 iron ion binding, 0018576 catechol 1,2-dioxygenase activity, 0009712 catechol-containing compound metabolic process, 0055114 oxidation-reduction process; PDB: 3O6R_B 1S9A_A 3O6J_A 3O5U_B 3O32_B 3HHY_A 3HHX_A 3HJS_A 3HJQ_A 3HKP_A ....
Probab=29.85 E-value=1.4e+02 Score=19.63 Aligned_cols=34 Identities=9% Similarity=0.089 Sum_probs=20.7
Q ss_pred cHHHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHH
Q 020661 270 CLDDLAYAIMYETTKLAY--RVSEADVTRARNQVAA 303 (323)
Q Consensus 270 ~~~~~~~~~~~~~~~l~~--~is~~el~~ak~~~~~ 303 (323)
++.+++..+.+-+..+.. .+|.+|+..++.-+..
T Consensus 3 R~~~i~~~lv~~lh~~i~e~~lT~~E~~~av~~L~~ 38 (74)
T PF04444_consen 3 RLKEIMARLVRHLHDFIREVDLTEDEWWAAVDFLNR 38 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 344555555555544444 8999999999887654
No 69
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=28.42 E-value=98 Score=24.23 Aligned_cols=37 Identities=8% Similarity=0.124 Sum_probs=30.5
Q ss_pred ccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHH
Q 020661 114 KTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVK 152 (323)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~ 152 (323)
.=++.+++.++.+. .|.++.++++|--.++++.+++.
T Consensus 113 gli~~~~v~~lL~~--rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 113 GYLDVEEVVEALQE--RPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred CCcCHHHHHHHHHh--CCCCCEEEEECCCCCHHHHHhCc
Confidence 45678899998865 79999999999988888887754
No 70
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=28.10 E-value=92 Score=24.51 Aligned_cols=37 Identities=8% Similarity=0.215 Sum_probs=30.6
Q ss_pred ccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHH
Q 020661 114 KTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVK 152 (323)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~ 152 (323)
.=++.+++.++.+. .|.++.++++|.-.++++.+++.
T Consensus 131 gli~~eeVl~~L~~--rp~~~evILTGR~~p~~Lie~AD 167 (178)
T PRK07414 131 GLIPETEVLEFLEK--RPSHVDVILTGPEMPESLLAIAD 167 (178)
T ss_pred CCccHHHHHHHHHh--CCCCCEEEEECCCCCHHHHHhCC
Confidence 44788999999885 69999999999888888877653
No 71
>PF10905 DUF2695: Protein of unknown function (DUF2695); InterPro: IPR024248 This bacterial family of proteins has no known function.
Probab=27.80 E-value=54 Score=19.92 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=19.2
Q ss_pred CCCChHHHHHHHHhcCCeeeeeec
Q 020661 7 EKRTARDLEEEIENMGGHLNAYTS 30 (323)
Q Consensus 7 ~~~~~~~~~~~l~~~g~~~~~~t~ 30 (323)
...+.+++.++|..+||.+.+.+-
T Consensus 28 ~~~~~~~vl~~l~~nGg~CDCEVl 51 (53)
T PF10905_consen 28 RQLDWEDVLEWLRENGGYCDCEVL 51 (53)
T ss_pred cCCCHHHHHHHHHHcCCCcceeee
Confidence 455678899999999999887653
No 72
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=27.37 E-value=1.8e+02 Score=24.74 Aligned_cols=40 Identities=18% Similarity=0.350 Sum_probs=25.0
Q ss_pred cccCCHHHHHHHHHhhC-CCCceEEEEEcCCCHHHHHHHHH
Q 020661 113 IKTITKEHLQNYIHTHY-TAPRMVIAASGAVKHEEVVEQVK 152 (323)
Q Consensus 113 l~~~~~~~l~~~~~~~~-~~~~~~l~i~G~~~~~~~~~~v~ 152 (323)
+++.+++++++..+..- ...+..+.++|+++++.+.+.++
T Consensus 208 LDn~~~e~l~~~v~~~~~~~~~~~ieAsGgIt~~ni~~ya~ 248 (273)
T PRK05848 208 CDNMSVEEIKEVVAYRNANYPHVLLEASGNITLENINAYAK 248 (273)
T ss_pred ECCCCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHH
Confidence 56667777777776421 11356677777777777766544
No 73
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=26.83 E-value=81 Score=23.13 Aligned_cols=44 Identities=11% Similarity=0.246 Sum_probs=31.6
Q ss_pred cccccCCHHHHHHHHHhhCCCCceEEEEEcCCC-HHHHHHHHHHH
Q 020661 111 QNIKTITKEHLQNYIHTHYTAPRMVIAASGAVK-HEEVVEQVKKL 154 (323)
Q Consensus 111 ~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~-~~~~~~~v~~~ 154 (323)
.-+.+++.++-++.+++++..+.-.++++-+.+ ++++.+.++++
T Consensus 60 ~yl~~l~~~~r~~~l~~l~~~~~P~iIvt~~~~~p~~l~e~a~~~ 104 (127)
T PF02603_consen 60 AYLNSLDEEERKERLEKLFSYNPPCIIVTRGLEPPPELIELAEKY 104 (127)
T ss_dssp HHHCCS-HHHHCCHHHHHCTTT-S-EEEETTT---HHHHHHHHHC
T ss_pred HHHHHCCHHHHHHHHHHHhCCCCCEEEEECcCCCCHHHHHHHHHh
Confidence 567889999999999999987777777777665 77888887764
No 74
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=26.46 E-value=1.8e+02 Score=24.83 Aligned_cols=30 Identities=13% Similarity=0.031 Sum_probs=16.8
Q ss_pred HHHHHhcCCeeeeeec------ceeEEEEEEecccc
Q 020661 15 EEEIENMGGHLNAYTS------REQTTYYAKVLDKD 44 (323)
Q Consensus 15 ~~~l~~~g~~~~~~t~------~~~~~~~~~~~~~~ 44 (323)
.+.++.+|..+..... .....+.+.++...
T Consensus 53 ~~if~~l~~~v~~~~~dG~~v~~G~~i~~~~G~a~~ 88 (284)
T PRK06096 53 CKMLTTLGLTIDDAVSDGSQANAGQRLISAQGNAAA 88 (284)
T ss_pred HHHHHHcCCEEEEEeCCCCEeCCCCEEEEEEeCHHH
Confidence 4445556655555433 24556777777655
No 75
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=26.39 E-value=1.6e+02 Score=17.89 Aligned_cols=42 Identities=19% Similarity=0.154 Sum_probs=27.6
Q ss_pred hHHHHHHHHhcCCeeeeeecceeEEEEEEeccccHHHHHHHHH
Q 020661 11 ARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILA 53 (323)
Q Consensus 11 ~~~~~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~ 53 (323)
..++.+.+++.|..+..-++.+ ..+++.....+.+..++-+.
T Consensus 17 ~~~if~~l~~~~i~v~~i~t~~-~~is~~v~~~~~~~~~~~l~ 58 (62)
T cd04890 17 LRKIFEILEKHGISVDLIPTSE-NSVTLYLDDSLLPKKLKRLL 58 (62)
T ss_pred HHHHHHHHHHcCCeEEEEecCC-CEEEEEEehhhhhHHHHHHH
Confidence 3568888999999877776543 55666666555555554443
No 76
>COG3462 Predicted membrane protein [Function unknown]
Probab=25.93 E-value=1e+02 Score=21.89 Aligned_cols=31 Identities=16% Similarity=0.168 Sum_probs=25.3
Q ss_pred ccHHHHHHHHHHHhhCCCCChHHHHHHHHHH
Q 020661 43 KDVNNALDILADILQNSTFDQARITRERDVI 73 (323)
Q Consensus 43 ~~l~~~l~ll~~~l~~p~~~~~~~~~~~~~~ 73 (323)
++-+.+.+++.+.+..=.++++++.+.++.+
T Consensus 85 e~~sRA~eIlkER~AkGEItEEEY~r~~~~i 115 (117)
T COG3462 85 ERGSRAEEILKERYAKGEITEEEYRRIIRTI 115 (117)
T ss_pred ccccHHHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 3456789999999999999998888877655
No 77
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.79 E-value=1.9e+02 Score=24.85 Aligned_cols=14 Identities=7% Similarity=-0.239 Sum_probs=8.5
Q ss_pred eeEEEEEEeccccH
Q 020661 32 EQTTYYAKVLDKDV 45 (323)
Q Consensus 32 ~~~~~~~~~~~~~l 45 (323)
....+.+.++...+
T Consensus 87 g~~i~~~~G~a~~l 100 (288)
T PRK07428 87 GQVVAEIEGPLDAL 100 (288)
T ss_pred CCEEEEEEEcHHHH
Confidence 44566677766553
No 78
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.08 E-value=1.8e+02 Score=24.86 Aligned_cols=34 Identities=15% Similarity=0.279 Sum_probs=14.5
Q ss_pred cCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHH
Q 020661 115 TITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQ 150 (323)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~ 150 (323)
.+++++++++.+.. +.+..+.++|.++.+.+.+.
T Consensus 217 ~~~~e~l~~~v~~~--~~~i~leAsGGIt~~ni~~~ 250 (277)
T PRK05742 217 ELSLDDMREAVRLT--AGRAKLEASGGINESTLRVI 250 (277)
T ss_pred CCCHHHHHHHHHHh--CCCCcEEEECCCCHHHHHHH
Confidence 34444444444321 12344445555554444433
No 79
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.42 E-value=1.9e+02 Score=17.90 Aligned_cols=46 Identities=9% Similarity=0.047 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCeeee-eecceeEEEEEEeccccHHHHHHHHHHHhh
Q 020661 12 RDLEEEIENMGGHLNA-YTSREQTTYYAKVLDKDVNNALDILADILQ 57 (323)
Q Consensus 12 ~~~~~~l~~~g~~~~~-~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~ 57 (323)
..+...|...|+.+.. +.+.....+++-...++.+.++..|++.+.
T Consensus 18 ~~i~~aL~~~~I~v~~i~~g~s~~sis~~v~~~~~~~av~~Lh~~f~ 64 (65)
T cd04918 18 ERAFHVLYTKGVNVQMISQGASKVNISLIVNDSEAEGCVQALHKSFF 64 (65)
T ss_pred HHHHHHHHHCCCCEEEEEecCccceEEEEEeHHHHHHHHHHHHHHHh
Confidence 3566667777877543 333456778888899999999999998773
No 80
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=23.38 E-value=2.4e+02 Score=22.13 Aligned_cols=47 Identities=11% Similarity=0.026 Sum_probs=37.2
Q ss_pred CCCChHHHHHHHHhcCCeeeeeecceeEEEEEEeccccHHHHHHHHHH
Q 020661 7 EKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILAD 54 (323)
Q Consensus 7 ~~~~~~~~~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~ 54 (323)
..-++.++.+..+..++.+ +.++.+++.+.+++.+++++.++++|..
T Consensus 94 ~~~~r~ei~~~~~~f~a~i-vdv~~~~~~ie~tG~~~ki~a~~~~l~~ 140 (174)
T CHL00100 94 NSQTRPEILEIAQIFRAKV-VDLSEESLILEVTGDPGKIVAIEQLLEK 140 (174)
T ss_pred CCcCHHHHHHHHHHhCCEE-EEecCCEEEEEEcCCHHHHHHHHHHhhh
Confidence 3446778888888887763 4566777999999999999999999875
No 81
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=23.33 E-value=2.1e+02 Score=18.35 Aligned_cols=45 Identities=13% Similarity=0.181 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCCeeeeee-cceeEEEEEEeccccHHHHHHHHHHHh
Q 020661 12 RDLEEEIENMGGHLNAYT-SREQTTYYAKVLDKDVNNALDILADIL 56 (323)
Q Consensus 12 ~~~~~~l~~~g~~~~~~t-~~~~~~~~~~~~~~~l~~~l~ll~~~l 56 (323)
..+.+.|...+..+..-. +.....+++.++.++.+.++..+++.+
T Consensus 19 ~~i~~~L~~~~I~v~~i~~~~~~~~isf~v~~~d~~~~~~~l~~~~ 64 (80)
T cd04921 19 ARIFSALARAGINVILISQASSEHSISFVVDESDADKALEALEEEF 64 (80)
T ss_pred HHHHHHHHHCCCcEEEEEecCCcceEEEEEeHHHHHHHHHHHHHHH
Confidence 457777888888765443 233357888888888888888888777
No 82
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=23.03 E-value=4.2e+02 Score=22.19 Aligned_cols=69 Identities=14% Similarity=0.283 Sum_probs=45.0
Q ss_pred hHHHHHHHHhcCCeeeeeec--------ceeEEEEEEeccccHHHHHHHHHHHh--hCCCCChHHHHHHHHHHHHHHHH
Q 020661 11 ARDLEEEIENMGGHLNAYTS--------REQTTYYAKVLDKDVNNALDILADIL--QNSTFDQARITRERDVILREMEE 79 (323)
Q Consensus 11 ~~~~~~~l~~~g~~~~~~t~--------~~~~~~~~~~~~~~l~~~l~ll~~~l--~~p~~~~~~~~~~~~~~~~~~~~ 79 (323)
..++.+.+...||.+.-+.. .....+.+..|+++++.++.-|...= ..-..+.+++..+-..+...++.
T Consensus 65 ~~~i~~~~~~~gG~i~~~~~~~~~~~~~~~~~~ltiRVP~~~~~~~l~~l~~~g~v~~~~~~~~DvT~~y~D~~arl~~ 143 (262)
T PF14257_consen 65 VKKIENLVESYGGYIESSSSSSSGGSDDERSASLTIRVPADKFDSFLDELSELGKVTSRNISSEDVTEQYVDLEARLKN 143 (262)
T ss_pred HHHHHHHHHHcCCEEEEEeeecccCCCCcceEEEEEEECHHHHHHHHHHHhccCceeeeeccccchHHHHHHHHHHHHH
Confidence 45678888889887554443 24678899999999999999998542 22334444454444444444443
No 83
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=22.96 E-value=1.2e+02 Score=23.38 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHhhC--CCCceEEEEEcC-CCHHHH
Q 020661 116 ITKEHLQNYIHTHY--TAPRMVIAASGA-VKHEEV 147 (323)
Q Consensus 116 ~~~~~l~~~~~~~~--~~~~~~l~i~G~-~~~~~~ 147 (323)
=+.+.+++|...+- ..+.+.++|||| +|.++-
T Consensus 99 dSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEee 133 (218)
T KOG0088|consen 99 DSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEE 133 (218)
T ss_pred HHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHh
Confidence 35577888888764 367889999999 455543
No 84
>PF03919 mRNA_cap_C: mRNA capping enzyme, C-terminal domain; InterPro: IPR013846 This domain is found at the C terminus of the mRNA capping enzyme. The mRNA capping enzyme in yeasts is composed of two separate chains: alpha a mRNA guanyltransferase and beta an RNA 5'-triphosphate. X-ray crystallography reveals a large conformational change during guanyl transfer by mRNA capping enzymes []. Binding of the enzyme to nucleotides is specific to the GMP moiety of GTP. The viral mRNA capping enzyme is a monomer that transfers a GMP cap onto the end of mRNA that terminates with a 5'-diphosphate tail.; GO: 0004484 mRNA guanylyltransferase activity; PDB: 3S24_G 3RTX_A 3KYH_D 1CKN_B 1CKO_A 1CKM_B 1P16_B.
Probab=22.88 E-value=1.2e+02 Score=21.36 Aligned_cols=40 Identities=8% Similarity=0.169 Sum_probs=27.2
Q ss_pred CcccEEEEeecCcccHHHHHHHHHHHHHHhccCCCHHHHH
Q 020661 256 DTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVT 295 (323)
Q Consensus 256 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~is~~el~ 295 (323)
..+.+.+.-....+...-.+..+..++..+..+|++++|-
T Consensus 65 ~~~~W~~~R~R~DK~~pN~~~t~~~v~~sI~d~Vt~e~Ll 104 (105)
T PF03919_consen 65 EKGQWKFMRIRDDKSTPNHISTVISVLESIEDPVTEEELL 104 (105)
T ss_dssp TTTEEEEEEEETTSSS--BHHHHHHHHHHHHCS--HHHHH
T ss_pred CCCcEeEEEEcCCCCCCccHHHHHHHHHHHHcCCCHHHhc
Confidence 4566776666666666678888888999998899999873
No 85
>PF14085 DUF4265: Domain of unknown function (DUF4265)
Probab=22.85 E-value=2.7e+02 Score=20.02 Aligned_cols=42 Identities=19% Similarity=0.328 Sum_probs=32.0
Q ss_pred ChHHHHHHHHhcCCeeeeeecceeEEEEEEeccc-cHHHHHHHHHH
Q 020661 10 TARDLEEEIENMGGHLNAYTSREQTTYYAKVLDK-DVNNALDILAD 54 (323)
Q Consensus 10 ~~~~~~~~l~~~g~~~~~~t~~~~~~~~~~~~~~-~l~~~l~ll~~ 54 (323)
+..++.+.|+.+|+.+..... -.+.++.|++ +++..-.+|..
T Consensus 66 ~~~~v~~~l~~lG~~~E~~~~---~~lav~VP~~~~~~~i~~~L~~ 108 (117)
T PF14085_consen 66 DIEAVREELEALGCTVEGFSE---RMLAVDVPPSVDFDAIKDYLDR 108 (117)
T ss_pred hHHHHHHHHHHcCCeEEccCC---CEEEEEECCCCCHHHHHHHHHh
Confidence 467788889999998887776 6788888875 56666666655
No 86
>PF13875 DUF4202: Domain of unknown function (DUF4202)
Probab=22.71 E-value=3.9e+02 Score=21.18 Aligned_cols=79 Identities=19% Similarity=0.402 Sum_probs=51.0
Q ss_pred HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCCCCCCCCCccccccCCHHHHHHHHH
Q 020661 47 NALDILADILQNSTFDQARITRERDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIH 126 (323)
Q Consensus 47 ~~l~ll~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~l~~~~~ 126 (323)
.--.+..++|...-++++++++....+..+ ....||...+.+...-++|=. ..+..|..
T Consensus 87 ~hA~~~~~im~~~Gy~~~~i~rV~~lv~K~--~lk~d~e~Q~LEDvacLVFL~-------------------~~f~~F~~ 145 (185)
T PF13875_consen 87 RHAAIAAEIMREAGYDEEEIDRVAALVRKE--GLKRDPETQALEDVACLVFLE-------------------YYFEDFAA 145 (185)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHhc--cCCCCchHHHHHhhHHHHhHH-------------------HHHHHHHh
Confidence 334566777888889998888887777653 345677766666655554421 12334443
Q ss_pred hhCCCCceEEEEEcCCCHHHHHHHHHHHhcCCCC
Q 020661 127 THYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSA 160 (323)
Q Consensus 127 ~~~~~~~~~l~i~G~~~~~~~~~~v~~~~~~~~~ 160 (323)
++ +.+.+..++.++.++++.
T Consensus 146 ~~--------------deeK~v~Il~KTw~KMS~ 165 (185)
T PF13875_consen 146 KH--------------DEEKIVDILRKTWRKMSE 165 (185)
T ss_pred cC--------------CHHHHHHHHHHHHHHCCH
Confidence 33 678888888888776644
No 87
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.53 E-value=2e+02 Score=17.76 Aligned_cols=45 Identities=13% Similarity=-0.035 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCCeeeeeecceeEEEEEEeccccHHHHHHHHHHHhh
Q 020661 12 RDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQ 57 (323)
Q Consensus 12 ~~~~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~ 57 (323)
..+.+.|...+..+-. .+.....+++-+..++.+.++..|++.+.
T Consensus 18 ~~~~~~L~~~~i~~i~-~~~s~~~is~vv~~~d~~~av~~LH~~f~ 62 (63)
T cd04920 18 GPALEVFGKKPVHLVS-QAANDLNLTFVVDEDQADGLCARLHFQLI 62 (63)
T ss_pred HHHHHHHhcCCceEEE-EeCCCCeEEEEEeHHHHHHHHHHHHHHHh
Confidence 3455556666666533 33346778888888999999999998774
No 88
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=22.09 E-value=2.1e+02 Score=26.76 Aligned_cols=48 Identities=15% Similarity=0.206 Sum_probs=38.5
Q ss_pred hHHHHHHHHhcCCeeeeeeccee-EEEEEEecc-ccHHHHHHHHHHHhhC
Q 020661 11 ARDLEEEIENMGGHLNAYTSREQ-TTYYAKVLD-KDVNNALDILADILQN 58 (323)
Q Consensus 11 ~~~~~~~l~~~g~~~~~~t~~~~-~~~~~~~~~-~~l~~~l~ll~~~l~~ 58 (323)
.+++.+++.++|.-++++++... -.+++.|++ +....+..-|+-.|..
T Consensus 467 ~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~ 516 (549)
T KOG0147|consen 467 REDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWFA 516 (549)
T ss_pred HHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhhc
Confidence 45678888899999999999887 789999998 4566777777777754
No 89
>COG5466 Predicted small metal-binding protein [Function unknown]
Probab=21.84 E-value=2.1e+02 Score=17.74 Aligned_cols=37 Identities=11% Similarity=0.223 Sum_probs=28.9
Q ss_pred cCcccHHHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHH
Q 020661 266 AKPDCLDDLAYAIMYETTKLAY--RVSEADVTRARNQVA 302 (323)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~~--~is~~el~~ak~~~~ 302 (323)
+..+...++...+..-++.-.. .++++.++..|.++.
T Consensus 19 ~~a~~~~Ev~~~iv~H~k~~Hg~t~I~ed~in~Ik~rIk 57 (59)
T COG5466 19 ARADSEAEVMRRIVEHAKEAHGETEIREDMINKIKSRIK 57 (59)
T ss_pred eccCcHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHhh
Confidence 3356678888888888877766 689999999998875
No 90
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=21.82 E-value=1.7e+02 Score=18.22 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=24.2
Q ss_pred HHHHHHhcCCeeeeeeccee---------EEEEEEeccccHHHHHHHHHHH
Q 020661 14 LEEEIENMGGHLNAYTSREQ---------TTYYAKVLDKDVNNALDILADI 55 (323)
Q Consensus 14 ~~~~l~~~g~~~~~~t~~~~---------~~~~~~~~~~~l~~~l~ll~~~ 55 (323)
+...|+..|+.+-....... ..+.+.++.++++.+.++|.++
T Consensus 15 i~~~L~~~gI~~~v~~~~~~~~~g~~g~~~~~~v~V~~~d~~~A~~il~~~ 65 (67)
T PF09413_consen 15 IKGLLEENGIPAFVKNEHMSGYAGEPGTGGQVEVYVPEEDYERAREILEEF 65 (67)
T ss_dssp HHHHHHHTT--EE--S----SS---S--SSSEEEEEEGGGHHHHHHHHHHT
T ss_pred HHHHHHhCCCcEEEECCccchhhcccCccCceEEEECHHHHHHHHHHHHHh
Confidence 45567777655433321111 1177788889999999998765
No 91
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=21.61 E-value=1.6e+02 Score=22.68 Aligned_cols=39 Identities=10% Similarity=0.246 Sum_probs=31.6
Q ss_pred ccccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHH
Q 020661 112 NIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVK 152 (323)
Q Consensus 112 ~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~ 152 (323)
.+.-++.+++.++.+. .|.++.++++|.-.++++.+++.
T Consensus 109 ~~gli~~~~v~~ll~~--rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 109 GYGLLDVEEVVDLLKA--KPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred hCCCCCHHHHHHHHHc--CCCCCEEEEECCCCCHHHHHhCc
Confidence 4556788999998875 57899999999888888877654
No 92
>PF01514 YscJ_FliF: Secretory protein of YscJ/FliF family; InterPro: IPR006182 This domain is found in proteins that are related to the YscJ lipoprotein, where it covers most of the sequence, and the flagellar M-ring protein FliF, where it covers the N-terminal region. The members of the YscJ family are thought to be involved in secretion of several proteins. The FliF protein ring is thought to be part of the export apparatus for flagellar proteins, based on the similarity to YscJ proteins [].; PDB: 1YJ7_A 2Y9J_d.
Probab=20.68 E-value=1.2e+02 Score=24.44 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=29.6
Q ss_pred cccCCCCChHHHHHHHHhcCCeeeeeecceeEEEEEEeccccHHHHHHHHHH
Q 020661 3 FKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILAD 54 (323)
Q Consensus 3 f~Gt~~~~~~~~~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~ 54 (323)
|.|-..-+..++...|+..|+.+...-+... +.+.++.++...+...|+.
T Consensus 32 ~~~l~~~da~~i~~~L~~~gI~y~~~~~g~~--~~I~Vp~~~~~~ar~~La~ 81 (206)
T PF01514_consen 32 YSGLDEEDANEIVAALDENGIPYKLSDDGGT--WTILVPEDQVARARMLLAS 81 (206)
T ss_dssp EEEE-HHHHHHHHHHHHHTT--EEEEE-TTS--EEEEEEGGGHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHCCCCcEecCCCCe--eEEEeCHHHHHHHHHHHHH
Confidence 3343333455677778888877776665554 7777887777766655554
No 93
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=20.40 E-value=2.6e+02 Score=24.55 Aligned_cols=43 Identities=2% Similarity=0.143 Sum_probs=36.0
Q ss_pred cccccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHHHH
Q 020661 111 QNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKL 154 (323)
Q Consensus 111 ~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~~~ 154 (323)
..+..++.+++++..+.+ .-.|+.++|-||++.|++.+.+..-
T Consensus 194 ~~l~~~d~~~ir~iL~Ey-~I~nA~V~Ir~dvTlDd~id~l~~n 236 (365)
T COG1163 194 GPLTHLDEDTVRAILREY-RIHNADVLIREDVTLDDLIDALEGN 236 (365)
T ss_pred cccccCCHHHHHHHHHHh-CcccceEEEecCCcHHHHHHHHhhc
Confidence 446678899999998875 5679999999999999999988754
No 94
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=20.23 E-value=2.6e+02 Score=23.77 Aligned_cols=18 Identities=28% Similarity=0.193 Sum_probs=10.2
Q ss_pred EEEEEcCCCHHHHHHHHH
Q 020661 135 VIAASGAVKHEEVVEQVK 152 (323)
Q Consensus 135 ~l~i~G~~~~~~~~~~v~ 152 (323)
.++..|++.++++.+.++
T Consensus 205 D~I~ld~~~p~~l~~~~~ 222 (272)
T cd01573 205 DILQLDKFSPEELAELVP 222 (272)
T ss_pred CEEEECCCCHHHHHHHHH
Confidence 355556666666555544
No 95
>COG3041 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.22 E-value=3e+02 Score=18.89 Aligned_cols=47 Identities=21% Similarity=0.256 Sum_probs=37.8
Q ss_pred HHHHHHHHhcc-C-CCHHHHHHHHHHHHHccCCCCCCCCccccccccCC
Q 020661 277 AIMYETTKLAY-R-VSEADVTRARNQVAASLPTYPGYLDICLLPTFVGL 323 (323)
Q Consensus 277 ~~~~~~~~l~~-~-is~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (323)
.+.+-++++.. + ...+.+..+...+..+........+.-+...|.|+
T Consensus 9 qF~kD~k~~~k~~~~d~~~l~~vi~~L~~~~Pl~~~~kDH~LtG~wkg~ 57 (91)
T COG3041 9 QFKKDFKKLIKRGPLDMDKLKKVITLLANDLPLPPRYKDHPLTGDWKGY 57 (91)
T ss_pred hhhHHHHHHHhcCcchHHHHHHHHHHHHhCCCCCccccCCccccCccch
Confidence 45566666666 4 88899999999999998888888888888888763
No 96
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=20.09 E-value=2.9e+02 Score=23.35 Aligned_cols=32 Identities=25% Similarity=0.195 Sum_probs=19.0
Q ss_pred CHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHHH
Q 020661 117 TKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKK 153 (323)
Q Consensus 117 ~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~~ 153 (323)
+.+++.+..+ ....++..|++.++.+.++++.
T Consensus 190 t~eea~~A~~-----~gaD~I~ld~~~~e~l~~~v~~ 221 (269)
T cd01568 190 TLEEAEEALE-----AGADIIMLDNMSPEELKEAVKL 221 (269)
T ss_pred CHHHHHHHHH-----cCCCEEEECCCCHHHHHHHHHH
Confidence 4556555543 2345666677777777766653
No 97
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=20.08 E-value=1.4e+02 Score=16.95 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHhhCCCCceEEEEEcC
Q 020661 116 ITKEHLQNYIHTHYTAPRMVIAASGA 141 (323)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~~~l~i~G~ 141 (323)
.+.++|..|.+.. .| +..+.|-|+
T Consensus 18 ad~~~L~~~i~~~-~p-~~vilVHGe 41 (43)
T PF07521_consen 18 ADREELLEFIEQL-NP-RKVILVHGE 41 (43)
T ss_dssp -BHHHHHHHHHHH-CS-SEEEEESSE
T ss_pred CCHHHHHHHHHhc-CC-CEEEEecCC
Confidence 3568999999998 88 666666663
No 98
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=20.02 E-value=6.6e+02 Score=22.76 Aligned_cols=106 Identities=11% Similarity=0.051 Sum_probs=57.8
Q ss_pred eeEEEEEEeccccHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCCCCCCCCCcc
Q 020661 32 EQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQ 111 (323)
Q Consensus 32 ~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 111 (323)
.-+.+++.....+..++..-....+.....++.+-...+..+......+..+-... .........-. .++..-..
T Consensus 316 GL~gv~~~~~~~~a~~~v~s~v~~lks~~~~~id~~~~~a~~~~l~~~~~ss~~a~-~~~~~~~a~~~----~~~d~~i~ 390 (429)
T KOG2583|consen 316 GLFGVYVSAQGSQAGKVVSSEVKKLKSALVSDIDNAKVKAAIKALKASYLSSVEAL-ELATGSQANLV----SEPDAFIQ 390 (429)
T ss_pred ceEEEEEEecCccHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhcchHHH-HHhhHHHhcCC----CChHHHHH
Confidence 34566667777777777777777776655444322222222222211122221221 11111111100 12222458
Q ss_pred ccccCCHHHHHHHHHhhCCCCceEEEEEcCCC
Q 020661 112 NIKTITKEHLQNYIHTHYTAPRMVIAASGAVK 143 (323)
Q Consensus 112 ~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~ 143 (323)
+|++++..|+.+..+++. .....+..+||++
T Consensus 391 ~id~Vt~sdV~~a~kk~~-s~kls~aA~Gnl~ 421 (429)
T KOG2583|consen 391 QIDKVTASDVQKAAKKFL-SGKLSLAAYGNLS 421 (429)
T ss_pred HhccccHHHHHHHHHHhc-cCcceeeeecccc
Confidence 899999999999999885 3577888899875
Done!