Query 020661
Match_columns 323
No_of_seqs 126 out of 1151
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 06:20:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020661.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020661hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eoq_A Putative zinc protease; 100.0 1.4E-48 4.8E-53 349.3 29.6 300 1-315 51-352 (406)
2 3hdi_A Processing protease; CA 100.0 3.7E-47 1.3E-51 341.7 30.2 300 1-315 51-352 (421)
3 1pp9_A Ubiquinol-cytochrome C 100.0 5.2E-47 1.8E-51 343.2 28.0 312 1-313 62-373 (446)
4 1hr6_B Beta-MPP, mitochondrial 100.0 3.7E-46 1.3E-50 337.4 31.1 314 1-314 56-374 (443)
5 3ami_A Zinc peptidase; alpha/b 100.0 1E-45 3.4E-50 334.7 28.1 304 1-315 56-369 (445)
6 1hr6_A Alpha-MPP, mitochondria 100.0 4.7E-45 1.6E-49 332.8 32.2 309 1-314 54-374 (475)
7 3gwb_A Peptidase M16 inactive 100.0 5.7E-44 2E-48 322.1 30.5 303 1-315 62-368 (434)
8 1pp9_B Ubiquinol-cytochrome C 100.0 3E-43 1E-47 317.9 31.5 304 1-314 72-377 (439)
9 3amj_B Zinc peptidase inactive 100.0 8.4E-43 2.9E-47 313.6 30.0 300 1-314 53-360 (424)
10 3d3y_A Uncharacterized protein 100.0 3E-41 1E-45 303.4 26.5 301 1-315 49-371 (425)
11 3cx5_A Cytochrome B-C1 complex 100.0 3E-41 1E-45 304.1 23.6 303 1-314 50-359 (431)
12 1q2l_A Protease III; hydrolase 100.0 9.9E-40 3.4E-44 320.6 28.9 299 1-309 70-381 (939)
13 3s5m_A Falcilysin; M16 metallo 100.0 2.3E-38 8E-43 310.3 25.7 296 1-307 134-516 (1193)
14 2fge_A Atprep2;, zinc metallop 100.0 4.6E-38 1.6E-42 310.2 23.3 296 1-308 82-411 (995)
15 3go9_A Insulinase family prote 100.0 8.4E-38 2.9E-42 285.4 22.5 289 1-311 77-382 (492)
16 3cww_A Insulysin, insulin-degr 100.0 1.9E-36 6.3E-41 298.8 28.7 297 1-308 84-396 (990)
17 3cx5_B Cytochrome B-C1 complex 100.0 2.3E-36 7.9E-41 265.1 21.7 278 1-314 38-318 (352)
18 2fge_A Atprep2;, zinc metallop 100.0 3.3E-28 1.1E-32 240.1 19.1 286 4-312 604-918 (995)
19 1q2l_A Protease III; hydrolase 99.9 1.1E-25 3.9E-30 220.9 23.5 275 20-314 566-848 (939)
20 3s5m_A Falcilysin; M16 metallo 99.9 1.4E-25 4.8E-30 220.3 13.1 292 2-311 767-1113(1193)
21 3cww_A Insulysin, insulin-degr 99.9 1.7E-24 5.8E-29 213.6 20.3 278 21-314 585-873 (990)
22 3ih6_A Putative zinc protease; 99.7 6.5E-18 2.2E-22 135.3 7.9 123 183-314 17-141 (197)
23 3ih6_A Putative zinc protease; 98.4 6E-06 2.1E-10 65.2 12.1 108 32-142 83-194 (197)
24 3hdi_A Processing protease; CA 98.1 1.3E-05 4.3E-10 71.2 10.5 109 32-143 294-405 (421)
25 3cx5_A Cytochrome B-C1 complex 98.1 2.2E-05 7.4E-10 69.8 11.5 127 14-143 276-414 (431)
26 3eoq_A Putative zinc protease; 98.1 1.1E-05 3.8E-10 71.3 9.3 126 15-143 271-405 (406)
27 1pp9_A Ubiquinol-cytochrome C 98.0 4.9E-05 1.7E-09 68.0 12.4 128 14-143 294-429 (446)
28 1hr6_A Alpha-MPP, mitochondria 98.0 9.5E-05 3.3E-09 66.7 13.8 128 13-142 288-437 (475)
29 3amj_B Zinc peptidase inactive 98.0 4.8E-05 1.6E-09 67.5 11.6 128 14-143 278-415 (424)
30 1hr6_B Beta-MPP, mitochondrial 98.0 9.9E-05 3.4E-09 65.9 13.0 128 13-142 289-428 (443)
31 1pp9_B Ubiquinol-cytochrome C 97.9 0.00012 4.2E-09 65.1 12.6 127 13-142 294-430 (439)
32 3gwb_A Peptidase M16 inactive 97.9 2.5E-05 8.5E-10 69.5 7.7 110 32-143 310-422 (434)
33 3ami_A Zinc peptidase; alpha/b 97.6 0.00019 6.3E-09 64.2 8.9 109 33-143 311-423 (445)
34 3d3y_A Uncharacterized protein 97.2 0.0021 7E-08 56.8 10.4 124 14-141 290-421 (425)
35 3go9_A Insulinase family prote 96.9 0.0061 2.1E-07 55.2 11.0 109 31-141 327-446 (492)
36 3cx5_B Cytochrome B-C1 complex 91.1 0.44 1.5E-05 40.5 6.6 119 184-315 6-125 (352)
37 2k6g_A Replication factor C su 59.8 18 0.00061 24.8 5.0 63 2-69 39-104 (109)
38 2ebu_A Replication factor C su 49.0 25 0.00087 24.2 4.3 62 2-68 29-93 (112)
39 3lh2_S 4E10_1VI7A_S0_002_N (T8 48.8 34 0.0012 21.4 4.7 47 12-58 20-66 (76)
40 1g6u_A Domain swapped dimer; d 48.4 30 0.001 18.4 4.0 25 276-300 3-28 (48)
41 2cok_A Poly [ADP-ribose] polym 47.6 19 0.00066 24.9 3.5 62 2-68 17-82 (113)
42 3ov5_A VIRB7 (XAC2622), unchar 39.9 44 0.0015 21.2 3.9 43 99-141 33-75 (85)
43 3gnn_A Nicotinate-nucleotide p 39.3 34 0.0012 28.2 4.4 40 111-152 233-272 (298)
44 2ld7_A Histone deacetylase com 34.2 1E+02 0.0035 20.4 5.5 45 110-160 21-65 (94)
45 1l7b_A DNA ligase; BRCT, autos 32.2 29 0.00098 22.9 2.4 63 2-69 14-77 (92)
46 2vi8_A Serine hydroxymethyltra 32.1 1.1E+02 0.0037 25.8 6.8 65 9-74 322-401 (405)
47 2l4w_A Uncharacterized protein 31.4 68 0.0023 21.7 4.0 44 99-142 63-106 (120)
48 3ff5_A PEX14P, peroxisomal bio 30.2 58 0.002 19.0 3.1 20 281-300 33-53 (54)
49 1g5t_A COB(I)alamin adenosyltr 27.4 69 0.0024 24.5 4.1 39 112-152 134-172 (196)
50 3paj_A Nicotinate-nucleotide p 27.1 88 0.003 26.1 4.9 40 111-152 255-294 (320)
51 4h62_V Mediator of RNA polymer 23.2 49 0.0017 15.9 1.6 17 5-21 5-21 (31)
52 2d8m_A DNA-repair protein XRCC 22.8 53 0.0018 23.0 2.5 37 3-39 30-66 (129)
53 2w84_A Peroxisomal membrane pr 22.7 98 0.0033 19.2 3.3 22 280-301 37-59 (70)
54 2dt9_A Aspartokinase; protein- 22.6 1.7E+02 0.0058 21.3 5.5 45 12-57 113-157 (167)
55 1nh2_B Transcription initiatio 22.4 1.2E+02 0.0042 17.5 3.9 35 272-308 14-48 (53)
56 1nvp_B Transcription initiatio 21.9 1.3E+02 0.0045 17.7 5.0 35 272-308 18-52 (57)
57 2dtj_A Aspartokinase; protein- 20.9 1.6E+02 0.0053 21.9 5.0 44 13-57 114-157 (178)
58 1qap_A Quinolinic acid phospho 20.5 1.3E+02 0.0044 24.7 4.7 38 113-152 234-271 (296)
59 3tqv_A Nicotinate-nucleotide p 20.4 88 0.003 25.6 3.6 37 113-151 224-260 (287)
No 1
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=100.00 E-value=1.4e-48 Score=349.30 Aligned_cols=300 Identities=23% Similarity=0.340 Sum_probs=273.6
Q ss_pred CccccCCCCChHHHHHHHHhcCCeeeeeecceeEEEEEEeccccHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHh
Q 020661 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEV 80 (323)
Q Consensus 1 ~~f~Gt~~~~~~~~~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~~~~~~~~~~~~~~~~ 80 (323)
|+|+||++++..++.+.++.+|+.+|++|+.++|.|++++++++++.+|+++++++ +|.|++++|+++|..+++|++..
T Consensus 51 mlf~Gt~~~~~~~~~~~l~~~G~~~na~t~~d~t~y~~~~~~~~l~~~l~ll~d~~-~p~f~~~~~~~ek~~v~~e~~~~ 129 (406)
T 3eoq_A 51 MVFKGPEDMDALAVNRAFDRMGAQYNAFTSEEATVYYGAVLPEFAYDLLGLFAKLL-RPALREEDFQTEKLVILEEIARY 129 (406)
T ss_dssp HHTTCCTTCCHHHHHHHHHHTTCEEEEEECSSCEEEEEEECGGGHHHHHHHHHHHT-SCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCCHHHHHHHHHHhCCCccceecCCeEEEEEEecHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hCChHHHHHHHHHHHhcCCCCCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHHHHhcCCCC
Q 020661 81 EGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSA 160 (323)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~~~~~~~~~ 160 (323)
.++|...+.+.+...+|+++||++++.|+.+.|++++.++|++||+++|.|+||+++|+||++++++.++++++|+.|+.
T Consensus 130 ~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~i~~~t~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~ 209 (406)
T 3eoq_A 130 QDRPGFMAYEWARARFFQGHPLGNSVLGTRESITALTREGMAAYHRRRYLPKNMVLAATGRVDFDRLLAEAERLTEAWPE 209 (406)
T ss_dssp HHCHHHHHHHHHHHHHHTTCGGGCCSSCCHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCC
T ss_pred cCCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhhCCHHHHHHHHHHhCCccCEEEEEEcCCCHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCcccccccCCCccccCCceeeecCCC-CceEEEEEeecCCCCCcchHHHHHHHHHcCCCCCCCCCCCCcccHHHHHhc
Q 020661 161 DPTTASQLVANEPAIFTGSEVRIIDDDI-PLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVG 239 (323)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~vl~~~l~~~~~~~~~~~~~~s~L~~~lr 239 (323)
.+.+.. . .+.... +.......+. +++++.++|++++.+++++.++.|++.+||+ ++++||+++||
T Consensus 210 ~~~~~~-~---~~~~~~-~~~~~~~~~~~~q~~~~~~~~~~~~~~~d~~~l~vl~~iLgg---------~~~srL~~~lr 275 (406)
T 3eoq_A 210 GEAERA-Y---PPLTPA-FGVEERPYEKARALYLVALFPGVAYQEEARFPGQVLAHLLGE---------EGSGRLHFALV 275 (406)
T ss_dssp CCCCCC-C---CCCCCC-CEEEEEECTTCSSEEEEEEEECCCTTCTTHHHHHHHHHHHHC---------TTTSHHHHHTT
T ss_pred CCCCCC-C---CCCCCC-CceEEEecCCccceEEEEEecCCCCCCchHHHHHHHHHHhCC---------CcchHHHHHHH
Confidence 544322 1 111122 2333334455 8999999999999999999999999999985 46899999999
Q ss_pred cccceehhcccccCCCCcccEEEEeecCcccHHHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHccCCCCCCCCcc
Q 020661 240 INEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAY-RVSEADVTRARNQVAASLPTYPGYLDIC 315 (323)
Q Consensus 240 e~g~~y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~is~~el~~ak~~~~~~~~~~~~~~~~~ 315 (323)
++|++|++++.+..+.+.|.|.+++.+++++..++++.+.++++++++ +++++||+++|++++.++..+.+++..+
T Consensus 276 e~gl~y~~~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~ 352 (406)
T 3eoq_A 276 DKGLAEVASFGLEEADRAGTFHAYVQADPARKGEVLAVLQEELDRLGREGVGEEEVERAKTPLATGLVFAGETPMQR 352 (406)
T ss_dssp TTTSEEEEEEEEEECSSCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTSHHHH
T ss_pred HcCCeeEEEEEecccCCceEEEEEEEeCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 999999999988878888999999999999999999999999999999 9999999999999999998888876544
No 2
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=100.00 E-value=3.7e-47 Score=341.72 Aligned_cols=300 Identities=29% Similarity=0.545 Sum_probs=274.0
Q ss_pred CccccCCCCChHHHHHHHHhcCCeeeeeecceeEEEEEEeccccHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHh
Q 020661 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEV 80 (323)
Q Consensus 1 ~~f~Gt~~~~~~~~~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~~~~~~~~~~~~~~~~ 80 (323)
|+|+||++++..++.+.++.+|+.+|++|+.+++.|++++++++++.+|+++.+++.+|.|++++++++|..++++++..
T Consensus 51 ~lf~gt~~~~~~~~~~~l~~~G~~~na~t~~d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~ 130 (421)
T 3hdi_A 51 MFFKGTNTRSAQEIAEFFDSIGGQVNAFTSKEYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVFEEIKMV 130 (421)
T ss_dssp HTTSBBSSSBHHHHHHHHHTTTSCEEEEECSSCEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCCCHHHHHHHHHHhCCceeeeeccceEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCChHHHHHHHHHHHhcCCCCCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHHHHhcCCCC
Q 020661 81 EGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSA 160 (323)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~~~~~~~~~ 160 (323)
.++|...+.+.+...+|+++||+++.+|+.+.|++++.++|++||+++|.|+||+++|+||++ +++.++++++|+.||.
T Consensus 131 ~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~it~~~l~~f~~~~y~p~n~~l~v~Gd~~-~~~~~~v~~~f~~~~~ 209 (421)
T 3hdi_A 131 DDTPDDIVHDLLSSATYGKHSLGYPILGTVETLNSFNEGMLRHYMDRFYTGDYVVISVAGNVH-DELIDKIKETFSQVKP 209 (421)
T ss_dssp HTCHHHHHHHHHHHHHHTTSGGGSCTTCCHHHHHHCCHHHHHHHHHHHSSTTTEEEEEEESCC-HHHHHHHHHHTTSSCC
T ss_pred hCCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHHhCCHHHHHHHHHHhcCcccEEEEEEeCCC-HHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999987
Q ss_pred CCCcccccccCCCccccCCceeeecCCCCceEEEEEeecCCCCCcchHHHHHHHHHcCCCCCCCCCCCCcccHHHHHhcc
Q 020661 161 DPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGI 240 (323)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~~l~~~~~~~~~~~~~~s~L~~~lre 240 (323)
.+.+... .++... ........+.+++++.++|+++++++++++++.|++.+||+ ++++|||++||+
T Consensus 210 ~~~~~~~----~~~~~~-~~~~~~~~~~~q~~v~~~~~~~~~~~~d~~~l~vl~~iLgg---------~~~srL~~~lRe 275 (421)
T 3hdi_A 210 TTYNYQG----EKPMFL-PNRIVRKKETEQAHLCLGYPGLPIGDKDVYALVLLNNVLGG---------SMSSRLFQDIRE 275 (421)
T ss_dssp CCCCCCC----CCCCCC-CCEEEEECCCSEEEEEEEEECCCTTCTTHHHHHHHHHHHTS---------SSSSHHHHHHTT
T ss_pred CCCCCCC----CCCCCC-CceEEecCCCCceEEEEEEecCCCCCchHHHHHHHHHHhCC---------CcccHHHHHHHH
Confidence 5443211 122222 23444556778999999999999999999999999999984 468999999996
Q ss_pred -ccceehhcccccCCCCcccEEEEeecCcccHHHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHccCCCCCCCCcc
Q 020661 241 -NEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAY-RVSEADVTRARNQVAASLPTYPGYLDIC 315 (323)
Q Consensus 241 -~g~~y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~is~~el~~ak~~~~~~~~~~~~~~~~~ 315 (323)
.|++|++++....+.+.+.|.+++.++++++.++++.+.++++++++ +++++||+++|+.++.++....+++..+
T Consensus 276 ~~glay~~~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~ 352 (421)
T 3hdi_A 276 KRGLCYSVFSYHSSFRDSGMLTIYAGTGHDQLDDLVYSIQETTSALAEKGLTEKELENGKEQLKGSLMLSLESTNSR 352 (421)
T ss_dssp TTCCCSCEEEEEEECSSCEEEEEEEEEEGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hcCCEEEEEEeecccCCCceEEEEEEeCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccCCHHHH
Confidence 79999999987777889999999999999999999999999999999 9999999999999999998888876554
No 3
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=100.00 E-value=5.2e-47 Score=343.18 Aligned_cols=312 Identities=38% Similarity=0.679 Sum_probs=276.4
Q ss_pred CccccCCCCChHHHHHHHHhcCCeeeeeecceeEEEEEEeccccHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHh
Q 020661 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEV 80 (323)
Q Consensus 1 ~~f~Gt~~~~~~~~~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~~~~~~~~~~~~~~~~ 80 (323)
|+|+||++++..++.+.++.+|+.+|++|+.+++.|++++++++++.+|+++++++.+|.|++++++++|..++++++..
T Consensus 62 mlf~GT~~~~~~~~~~~l~~~G~~~na~t~~d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~ 141 (446)
T 1pp9_A 62 LAFKGTKNRPGNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQEN 141 (446)
T ss_dssp HTTSCBSSSTTTHHHHHHHHTTCEEEEEECSSCEEEEEEEEGGGHHHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCCCHHHHHHHHHHcCCEEEEEEcCCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCChHHHHHHHHHHHhcCCCCCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHHHHhcCCCC
Q 020661 81 EGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSA 160 (323)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~~~~~~~~~ 160 (323)
.++|...+.+.+...+|+++||++++.|+.+.|++++.++|++||+++|.|+||+++|+||++++++.++++++|+.|+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~~~~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~ 221 (446)
T 1pp9_A 142 DTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSG 221 (446)
T ss_dssp TTCHHHHHHHHHHHHHTTTSGGGSCSSCCHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCS
T ss_pred hcCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHHhCCHHHHHHHHHhccCCCCEEEEEEcCCCHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCcccccccCCCccccCCceeeecCCCCceEEEEEeecCCCCCcchHHHHHHHHHcCCCCCCCCCCCCcccHHHHHhcc
Q 020661 161 DPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGI 240 (323)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~~l~~~~~~~~~~~~~~s~L~~~lre 240 (323)
.+.+..+..+ .++...+..+.+...+.+++++.++|+.++++++++.++.|++.+||++.+..|+|+++++||++.||+
T Consensus 222 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg~~~~~~~~g~~~~srL~~~lr~ 300 (446)
T 1pp9_A 222 TYDEDAVPTL-SPCRFTGSQICHREDGLPLAHVAIAVEGPGWAHPDNVALQVANAIIGHYDCTYGGGAHLSSPLASIAAT 300 (446)
T ss_dssp CCCSSCCCCC-CCCCCCCEEEEEEETTSSSEEEEEEEEECCTTCTHHHHHHHHHHHHCEEETTCSCGGGCSSHHHHHHHH
T ss_pred CCCCCccccC-CCCCCCCceEEEecCCccceEEEEEEecCCCCCccHHHHHHHHHHhCCCcccCCCCCCCCCHHHHHHHh
Confidence 5433221110 022223333333445567899999999999999999999999999987555445455789999999999
Q ss_pred ccceehhcccccCCCCcccEEEEeecCcccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCCCCCCCC
Q 020661 241 NEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQVAASLPTYPGYLD 313 (323)
Q Consensus 241 ~g~~y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~is~~el~~ak~~~~~~~~~~~~~~~ 313 (323)
.|++|++++.+..+.+.|.|.+++.+++++..++++.+.++++++.++++++||+++|.+++.++....+++.
T Consensus 301 ~glay~~~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~t~~el~~ak~~~~~~~~~~~~~~~ 373 (446)
T 1pp9_A 301 NKLCQSFQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVLRGKNLLRNALVSHLDGTT 373 (446)
T ss_dssp HTCCSEEEEEEEECSSCEEEEEEEEECTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCSHH
T ss_pred cCCeEEEEEecccCCCCeEEEEEEEECHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCCHH
Confidence 9999999887766677899999999999999999999999999987789999999999999999988777764
No 4
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=100.00 E-value=3.7e-46 Score=337.36 Aligned_cols=314 Identities=40% Similarity=0.675 Sum_probs=276.9
Q ss_pred CccccCCCCChHHHHHHHHhcCCeeeeeecceeEEEEEEeccccHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHh
Q 020661 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEV 80 (323)
Q Consensus 1 ~~f~Gt~~~~~~~~~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~~~~~~~~~~~~~~~~ 80 (323)
|+|+||++++..++.+.++.+|+.+|++|+.+++.|++++++++++.+|+++.+++.+|.|++++++++|+.++++++..
T Consensus 56 ~~~~Gt~~~~~~~l~~~l~~~g~~~na~t~~~~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~ 135 (443)
T 1hr6_B 56 LAFKGTQNRPQQGIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEV 135 (443)
T ss_dssp HTTSBBSSCBHHHHHHHHHHTTCEEEEEECSSEEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCCCCCCHHHHHHHHHHcCCeEEEEECCCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCChHHHHHHHHHHHhcCCCCCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHHHHhcCCCC
Q 020661 81 EGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSA 160 (323)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~~~~~~~~~ 160 (323)
..+|...+.+.+...+|+++||+.++.|+.+.|++++.++|++||+++|.|+||+++|+||++++++.++++++|+.||.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~~l~~f~~~~y~~~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~ 215 (443)
T 1hr6_B 136 DKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITRTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPK 215 (443)
T ss_dssp TTCHHHHHHHHHHHHHTTTSGGGSCSSCCHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCC
T ss_pred hCChHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhhCCHHHHHHHHHhcCcCCCEEEEEEcCCCHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCccccccc-CCCccccCCceeeecCCCCceEEEEEeecCCCCCcchHHHHHHHHHcCCCCCCCCCCCCcccHHHHHhc
Q 020661 161 DPTTASQLVA-NEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVG 239 (323)
Q Consensus 161 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~~l~~~~~~~~~~~~~~s~L~~~lr 239 (323)
...+...... ...+.+.+..+.+...+.+++++.++|+.++++++++.++.|++.+|+++.+..++|.++++||++.||
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~vl~~iLg~~~r~~~~g~~~~s~L~~~lr 295 (443)
T 1hr6_B 216 SESPVPLGSPRGPLPVFCRGERFIKENTLPTTHIAIALEGVSWSAPDYFVALATQAIVGNWDRAIGTGTNSPSPLAVAAS 295 (443)
T ss_dssp CSSCCCTTSCCSSCCCCCCEEEEEECTTCSEEEEEEEEECCCTTCTTHHHHHHHHHHHCEEETTTBCSSSSCCHHHHHHH
T ss_pred CCCCCCcccccCCCCCCCCCeEEeccCCccceEEEEEEecCCCCCccHHHHHHHHHHhCCCcccCCCCCCcccHHHHHHH
Confidence 4433221100 001122233333334566889999999999899999999999999998654434555578999999999
Q ss_pred c-ccceehhcccccCCCCcccEEEEeecC--cccHHHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHccCCCCCCCCc
Q 020661 240 I-NEIAESMMAFNTNYKDTGLFGVYAVAK--PDCLDDLAYAIMYETTKLAY-RVSEADVTRARNQVAASLPTYPGYLDI 314 (323)
Q Consensus 240 e-~g~~y~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~l~~-~is~~el~~ak~~~~~~~~~~~~~~~~ 314 (323)
| +|++|++++.+..+.+.+.|.+++.++ |+++.++++.+.++++++.+ +++++||+++|+.++.++....+++..
T Consensus 296 e~~glay~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~ 374 (443)
T 1hr6_B 296 QNGSLANSYMSFSTSYADSGLWGMYIVTDSNEHNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTA 374 (443)
T ss_dssp STTCSCSEEEEEEEECSSCEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCCSHHH
T ss_pred HHcCCeEEEEeeecCCCCceEEEEEEEecCChhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHccCCHHH
Confidence 5 899999988777677889999999999 99999999999999999999 899999999999999999988887643
No 5
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=100.00 E-value=1e-45 Score=334.66 Aligned_cols=304 Identities=22% Similarity=0.325 Sum_probs=267.7
Q ss_pred CccccCCCCChHHHHHHHHhcCCeeeeeecceeEEEEEEeccccHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHH-H
Q 020661 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREME-E 79 (323)
Q Consensus 1 ~~f~Gt~~~~~~~~~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~~~~~~~~~~~~~~-~ 79 (323)
|+|+||++++..++.+.++.+|+.+|++|+.+.+.|.+++++++++.+|+++++++.+|.|++++|+++|..++++++ .
T Consensus 56 mlf~Gt~~~~~~~l~~~l~~~g~~~na~t~~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~ 135 (445)
T 3ami_A 56 MMFKGTKDVGPGEFSKRVAAMGGRDNAFTTRDYTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQVIAEERRWR 135 (445)
T ss_dssp HTTSCBSSSCTTHHHHHHHHTTCEEEEEECSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHT
T ss_pred hhcCCCCCCCHHHHHHHHHHhCCccccccCCCeEEEEEECCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred hhCChHHHHHHHHHHHhcCCCCCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHHHHhcCCC
Q 020661 80 VEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLS 159 (323)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~~~~~~~~ 159 (323)
..++|...+.+.+...+|+++||+++++|+.++|++++.++|++||+++|.|+||+++|+||++++++.++++++|+.||
T Consensus 136 ~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~l~~it~~~l~~f~~~~y~p~n~~l~vvGd~d~~~~~~~v~~~f~~~~ 215 (445)
T 3ami_A 136 TDDKPRSKAYEALMAASYVAHPYRVPVIGWMNDIQNMTAQDVRDWYKRWYGPNNATVVVVGDVEHEAVFRLAEQTYGKLA 215 (445)
T ss_dssp GGGCHHHHHHHHHHHHHCSSSGGGSCTTCCHHHHHHCCHHHHHHHHHHHCSGGGEEEEEEESCCHHHHHHHHHHTGGGSC
T ss_pred ccCChHHHHHHHHHHHhccCCCCCCCCCCCHHHHhhCCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHhcCCC
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCcccccccCCCccccCCceeeecCCCCceEEEEEeecCC---CC-CcchHHHHHHHHHcCCCCCCCCCCCCcccHHH
Q 020661 160 ADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGAS---WT-DPDSIALMVMQAMLGSWNKNSVGGKHMGSELA 235 (323)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~-~~~~~~~~vl~~~l~~~~~~~~~~~~~~s~L~ 235 (323)
..+.+....+ ..+...+........+.+++.+.++|+.+. ++ ++++.++.+++.+|++ ++++||+
T Consensus 216 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~vl~~iLg~---------~~~srL~ 284 (445)
T 3ami_A 216 RVEAPARKQQ--GEPQQAGVRRVTVKAPAELPYLALAWHVPAIVDLDKSRDAYALEILAAVLDG---------YDGARMT 284 (445)
T ss_dssp CCCCCCCCCC--CCCCCCSCEEEEEEEECSSCEEEEEEEECCCSSTTCCHHHHHHHHHHHHHHS---------STTCHHH
T ss_pred CCCCCCCCCC--CCCCCCCceEEEEecCCCccEEEEEEEcCCcccccCChhHHHHHHHHHHHcC---------CcchHHH
Confidence 7543322111 112222323233333467888999999988 77 8999999999999984 4689999
Q ss_pred HHhc-cccceehhcccccC-CCC-cccEEEEeecCcc-cHHHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHccCCCCC
Q 020661 236 QRVG-INEIAESMMAFNTN-YKD-TGLFGVYAVAKPD-CLDDLAYAIMYETTKLAY-RVSEADVTRARNQVAASLPTYPG 310 (323)
Q Consensus 236 ~~lr-e~g~~y~~~~~~~~-~~~-~~~~~i~~~~~~~-~~~~~~~~~~~~~~~l~~-~is~~el~~ak~~~~~~~~~~~~ 310 (323)
+.|| ++|++|++++.+.. ..+ .+.|.+++.+.++ +.+++++.+.++++++.+ +++++||+++|+.++.++....+
T Consensus 285 ~~lre~~gl~y~v~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~g~t~~el~~ak~~~~~~~~~~~~ 364 (445)
T 3ami_A 285 RQLVRGNKHAVSAGAGYDSLSRGQQGLFILEGVPSKGVTIAQLETDLRAQVRDIAAKGVTEAELSRVKSQMVAGKVYEQD 364 (445)
T ss_dssp HHTTTTSCCEEEEEEECCCCCSSCCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHhhcCCcEEEEEeeccccccCCCCeEEEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhh
Confidence 9999 58999999987663 456 7999999999887 599999999999999998 99999999999999999998888
Q ss_pred CCCcc
Q 020661 311 YLDIC 315 (323)
Q Consensus 311 ~~~~~ 315 (323)
++..+
T Consensus 365 ~~~~~ 369 (445)
T 3ami_A 365 SLMGQ 369 (445)
T ss_dssp SHHHH
T ss_pred CHHHH
Confidence 76543
No 6
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=100.00 E-value=4.7e-45 Score=332.81 Aligned_cols=309 Identities=28% Similarity=0.383 Sum_probs=275.9
Q ss_pred CccccCCCCChHHHHHHHHhcCCeeeeeecceeEEEEEEeccccHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHh
Q 020661 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEV 80 (323)
Q Consensus 1 ~~f~Gt~~~~~~~~~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~~~~~~~~~~~~~~~~ 80 (323)
|+|+||++++..++.+.++.+|+.+|++|+.+.+.|++++++++++.+|++|.+++.+|.|++++|+++|..++++++..
T Consensus 54 m~f~Gt~~~~~~~~~~~le~~G~~~na~t~~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~ 133 (475)
T 1hr6_A 54 LAFKSTEHVEGRAMAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEV 133 (475)
T ss_dssp TTTSCBTTBCHHHHHHHHHHTTSCEEEEECSSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCCHHHHHHHHHHcCCEEEEEEccCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hCChHHHHHHHHHHHhcCCCCCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHHHHhcCCCC
Q 020661 81 EGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSA 160 (323)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~~~~~~~~~ 160 (323)
..+|..++.+.+...+|+++||+++.+|+.+.|+.++.++|++||+++|.|+||+++|+| ++++++.++++++|+.|+.
T Consensus 134 ~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~it~~~l~~f~~~~y~p~n~~l~v~G-~d~~~~~~~i~~~f~~~~~ 212 (475)
T 1hr6_A 134 WMKPELVLPELLHTAAYSGETLGSPLICPRGLIPSISKYYLLDYRNKFYTPENTVAAFVG-VPHEKALELTGKYLGDWQS 212 (475)
T ss_dssp TTCHHHHHHHHHHHHHTTTSGGGSCSSCCGGGGGGCCHHHHHHHHHHHCCGGGEEEEEES-SCHHHHHHHHHHHHTTCCC
T ss_pred hcCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhhcCHHHHHHHHHHhCCcccEEEEEeC-CCHHHHHHHHHHHhccCCC
Confidence 899999999999999999999999999999999999999999999999999999999999 9999999999999999986
Q ss_pred CCCcccccccCCCccccCCceeeec-----CCCCceEEEEEeecCCCCCcchHHHHHHHHHcCCCCCCC--CCCCCcccH
Q 020661 161 DPTTASQLVANEPAIFTGSEVRIID-----DDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNS--VGGKHMGSE 233 (323)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~~l~~~~~~~--~~~~~~~s~ 233 (323)
.+.+... .++.+.+....+.. .+.+++++.++|++++++++++.++.|++.+||++++|+ |+|.++.++
T Consensus 213 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~ 288 (475)
T 1hr6_A 213 THPPITK----KVAQYTGGESCIPPAPVFGNLPELFHIQIGFEGLPIDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSR 288 (475)
T ss_dssp CCCCCCC----CCCCCCCEEEEECCCCCCSSSCCCEEEEEEEECCCTTCTTHHHHHHHHHHHCEEESSCCSSTTSCTTSH
T ss_pred CCCCCCC----CCCCCcCCeEEEecccccCCCccceEEEEEEecCCCCCccHHHHHHHHHHhCCCcccccCCCCCCcCCH
Confidence 4432111 11222232223321 456788999999988888899999999999999876666 667778999
Q ss_pred HHHHhcc-ccceehhcccccCCCCcccEEEEeecCcccHHHHHHHHHHHHHHhcc----CCCHHHHHHHHHHHHHccCCC
Q 020661 234 LAQRVGI-NEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAY----RVSEADVTRARNQVAASLPTY 308 (323)
Q Consensus 234 L~~~lre-~g~~y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~----~is~~el~~ak~~~~~~~~~~ 308 (323)
||+.||+ +|++|++++.+..+.+.+.|.+++.++|+++.++++.+.++++++.+ ++|++||+++|++++.++...
T Consensus 289 L~~~lr~~~gl~y~v~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~t~~El~~ak~~l~~~~~~~ 368 (475)
T 1hr6_A 289 LYTHVLNQYYFVENCVAFNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMN 368 (475)
T ss_dssp HHHHTTTTCSSEEEEEEEEEECSSCEEEEEEEEECGGGHHHHHHHHHHHHHTTTTCTTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCeeEEEEeccccCCCceEEEEEEeCHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999996 79999999988777788999999999999999999999999999986 599999999999999999887
Q ss_pred CCCCCc
Q 020661 309 PGYLDI 314 (323)
Q Consensus 309 ~~~~~~ 314 (323)
.+++..
T Consensus 369 ~~~~~~ 374 (475)
T 1hr6_A 369 LESKLV 374 (475)
T ss_dssp TTSHHH
T ss_pred CCCHHH
Confidence 777554
No 7
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=100.00 E-value=5.7e-44 Score=322.12 Aligned_cols=303 Identities=17% Similarity=0.229 Sum_probs=270.2
Q ss_pred CccccCCCCChHHHHHHHHhcCCeeeeeecceeEEEEEEecccc--HHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHH
Q 020661 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKD--VNNALDILADILQNSTFDQARITRERDVILREME 78 (323)
Q Consensus 1 ~~f~Gt~~~~~~~~~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~--l~~~l~ll~~~l~~p~~~~~~~~~~~~~~~~~~~ 78 (323)
|+|+||++++..++.+.++.+|+.+|++|+.+++.|++++++++ ++.+|+++.+++.+|.|++++|+++|+.++++++
T Consensus 62 ll~~gt~~~~~~~l~~~l~~~g~~~~a~t~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~ 141 (434)
T 3gwb_A 62 MLNEGVAGKDVGAIAQGFEGLGADFGNGAYKDMAVASLRSLSAVDKREPALKLFAEVVGKPTFPADSLARIKNQMLAGFE 141 (434)
T ss_dssp HGGGEETTEEHHHHHHHHHTTTCEEEEEECSSCEEEEEEEECSHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHhcCcccCCHHHHHHHHHHhCCEEEeeecCCeEEEEEEecCccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999988 9999999999999999999999999999999999
Q ss_pred HhhCChHHHHHHHHHHHhcCCCCCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHHHHhcCC
Q 020661 79 EVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKL 158 (323)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~~~~~~~ 158 (323)
+...+|...+.+.+...+|+++||+.+..|+.+.|++++.++|++||+++|.|+|++++|+||++.+++.++++++|+.|
T Consensus 142 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~l 221 (434)
T 3gwb_A 142 YQKQNPGKLASLELMKRLYGTHPYAHASDGDAKSIPPITLAQLKAFHAKAYAAGNVVIALVGDLSRSDAEAIAAQVSAAL 221 (434)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTSTTSSCTTCCTTTTTTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHHHHHHHS
T ss_pred HhhcCHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHhCCHHHHHHHHHHhcCcCCeEEEEEcCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccCCCccccCCceeeecCCCCceEEEEEeecCCCCCcchHHHHHHHHHcCCCCCCCCCCCCcccHHHHHh
Q 020661 159 SADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRV 238 (323)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~~l~~~~~~~~~~~~~~s~L~~~l 238 (323)
|..+.+..+. .+.. ..+.......+.+++.+.++|+.++.+++++.++.|++.+||+ ++++++||+.|
T Consensus 222 ~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~vl~~iLg~--------~~~~s~L~~~l 289 (434)
T 3gwb_A 222 PKGPALAKIE---QPAE-PKASIGHIEFPSSQTSLMLAQLGIDRDDPDYAAVSLGNQILGG--------GGFGTRLMSEV 289 (434)
T ss_dssp CCCCCCCCCC---CCCC-CCCEEEEEECCSSEEEEEEEEECCBTTCTTHHHHHHHHHHHHS--------SSSCSHHHHHH
T ss_pred CCCCCCCCCC---CCCC-CCCceEEEeCCCCceeEEecCcCCCCCCcchHHHHHHHHHhCC--------CcccchhHHHH
Confidence 8764332211 1112 2222333344568899999999999999999999999999984 23789999999
Q ss_pred cc-ccceehhcccccCCCCcccEEEEeecCcccHHHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHccCCCCCCCCcc
Q 020661 239 GI-NEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAY-RVSEADVTRARNQVAASLPTYPGYLDIC 315 (323)
Q Consensus 239 re-~g~~y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~is~~el~~ak~~~~~~~~~~~~~~~~~ 315 (323)
|+ +|++|++++.+..+.+.+.|.+++.+++++++++++.+.++++++.+ +++++||+++|..++.++....+++..+
T Consensus 290 Re~~gl~Y~v~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~~~ 368 (434)
T 3gwb_A 290 REKRGLTYGVYSGFTPMQARGPFMINLQTRAEMSEGTLKLVQDVFAEYLKNGPTQKELDDAKRELAGSFPLSTASNADI 368 (434)
T ss_dssp TTTTCCCSCEEEEECCBSSCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---CCCCHHHH
T ss_pred HhhcCCcceeeeecccCCCceeEEEEEecchhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhhhccCHHHH
Confidence 97 79999999988877888999999999999999999999999999998 9999999999999999999988886544
No 8
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=100.00 E-value=3e-43 Score=317.88 Aligned_cols=304 Identities=22% Similarity=0.350 Sum_probs=270.2
Q ss_pred CccccCCCCChHHHHHHHHhcCCeeeeeecceeEEEEEEeccccHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHh
Q 020661 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEV 80 (323)
Q Consensus 1 ~~f~Gt~~~~~~~~~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~~~~~~~~~~~~~~~~ 80 (323)
|+|+||++++..++.+.++.+|+.+|++|+.+++.|++++++++++.+|+++.+++.+|.|++++|+++|+.++++++..
T Consensus 72 ~~~~gt~~~~~~~~~~~l~~~G~~~na~t~~~~t~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~v~~e~~~~ 151 (439)
T 1pp9_B 72 ASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVA 151 (439)
T ss_dssp TTTSCBSSSCHHHHHHHHHHTTCEEEEEECSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCcCCHHHHHHHHHHhCCeEEEEecceEEEEEEEeehhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hCChHHHHHHHHHHHhcCCCCCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHHHHhcCCCC
Q 020661 81 EGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSA 160 (323)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~~~~~~~~~ 160 (323)
..+|...+.+.+...+|+ +||+++..|+.+.|++++.++|++||+++|.|+|++++|+|| +++++.++++++|+ |+.
T Consensus 152 ~~~p~~~~~~~~~~~~~~-~~~~~~~~g~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~-~~~~~~~~~~~~~~-~~~ 228 (439)
T 1pp9_B 152 LQNPQAHVIENLHAAAYR-NALANSLYCPDYRIGKVTPVELHDYVQNHFTSARMALIGLGV-SHPVLKQVAEQFLN-IRG 228 (439)
T ss_dssp TTSHHHHHHHHHHHHHBS-SGGGSCSSCCGGGTTTCCHHHHHHHHHHHCSGGGEEEEEESS-CHHHHHHHHHHHCC-CCC
T ss_pred HcCHHHHHHHHHHHHHhc-CCCCCCccCCHHHHhhcCHHHHHHHHHHhCCCCceEEEEeCC-CHHHHHHHHHHHhC-CCC
Confidence 899999999999999999 999999999999999999999999999999999999999999 99999999999998 876
Q ss_pred CCCcccccccCCCccccCCceeeecCCCCceEEEEEeecCCCCCcchHHHHHHHHHcCCCCCCCCCCCCcccHHHHHhcc
Q 020661 161 DPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGI 240 (323)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~~l~~~~~~~~~~~~~~s~L~~~lre 240 (323)
.+.+.. .++.+.+.... ...+.+++++.++|+.+++++++.+++.|++.+|+++..|+ .|++++++||+.||+
T Consensus 229 ~~~~~~-----~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~ll~~iLg~~~~~~-~~~g~~s~L~~~lRe 301 (439)
T 1pp9_B 229 GLGLSG-----AKAKYHGGEIR-EQNGDSLVHAALVAESAAIGSAEANAFSVLQHVLGAGPHVK-RGSNATSSLYQAVAK 301 (439)
T ss_dssp CC-CCC-----CCCCBCCEEEE-EECCCSEEEEEEEEECCCTTSHHHHHHHHHHHHHCCSCSBT-TCCCTTCHHHHHHHH
T ss_pred CCCCCC-----CCCCCcCCeEE-ecCCccceEEEEEecCCCCCchHHHHHHHHHHHhCCCcccC-CCCCccCHHHHHHHH
Confidence 443211 11222222233 33456789999999999899999999999999999765544 455789999999995
Q ss_pred -ccceehhcccccCCCCcccEEEEeecCcccHHHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHccCCCCCCCCc
Q 020661 241 -NEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAY-RVSEADVTRARNQVAASLPTYPGYLDI 314 (323)
Q Consensus 241 -~g~~y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~is~~el~~ak~~~~~~~~~~~~~~~~ 314 (323)
.|++|++++.+..+.+.+.|.+++.++|+++.++++.+.++++++.+ +++++||+++|+.++.++....+++..
T Consensus 302 ~~gl~Y~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~ 377 (439)
T 1pp9_B 302 GVHQPFDVSAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVESSEG 377 (439)
T ss_dssp HCCSCEEEEEEEEEETTEEEEEEEEEEEGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSSHHH
T ss_pred hcCCceEEEEeeccccccceEEEEEEeCHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCHHH
Confidence 79999998877666778999999999999999999999999999998 999999999999999998877776543
No 9
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=100.00 E-value=8.4e-43 Score=313.60 Aligned_cols=300 Identities=20% Similarity=0.313 Sum_probs=267.2
Q ss_pred CccccCC----CCChHHHHHHHHhcCCeeeeeecceeEEEEEEeccccH--HHHHHHHHHHhhCCCCChHHHHHHHHHHH
Q 020661 1 MIFKGTE----KRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDV--NNALDILADILQNSTFDQARITRERDVIL 74 (323)
Q Consensus 1 ~~f~Gt~----~~~~~~~~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l--~~~l~ll~~~l~~p~~~~~~~~~~~~~~~ 74 (323)
|+|+||+ +++..++.+.++.+|+.+|++|+.+.+.|+++++++++ +.+|+++.+++.+|.|++++|+++|+.++
T Consensus 53 ~l~~Gt~~~~~~~~~~~~~~~l~~~G~~~~a~t~~~~t~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~e~~~v~ 132 (424)
T 3amj_B 53 LMDAGTGSGKSALDENAIADRLADIGARLGGGAEADRASFSLRVLSSPAERNSALTILRDILAHPTFPAPVLERERARAI 132 (424)
T ss_dssp TGGGEECSTTSCEEHHHHHHHHHHTTCEEEEEECSSCEEEEEEEESSHHHHHHHHHHHHHHHHCBCCCHHHHHHHHHHHH
T ss_pred HHHhccCCCccCCCHHHHHHHHHHhCCEEEeecCCCeEEEEEEEeccccChhHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 7899999 99999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred HHHHHhhCChHHHHHHHHHHHhcCCCCCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHHHH
Q 020661 75 REMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKL 154 (323)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~~~ 154 (323)
++++....+|...+.+.+...+|+++||+.+. +.+.|++++.++|++||+++|.|+||+++|+||++++++.++++++
T Consensus 133 ~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~--~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~Gd~~~~~~~~~~~~~ 210 (424)
T 3amj_B 133 AGLREAQTQPGSILGRRFTELAYGKHPYGHVS--SVATLQKISRDQLVSFHRTHYVARTAVVTLVGDITRAEAETIAQQL 210 (424)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHHHTTSGGGCCC--CHHHHHHCCHHHHHHHHHHHSCTTSCEEEEEESCCHHHHHHHHHHT
T ss_pred HHHHHhhcCHHHHHHHHHHHhcCCCCCCCCCC--CHHHHHhCCHHHHHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHHH
Confidence 99999889999999999999999999999887 8899999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCcccccccCCCccccCCceeeecCCCCceEEEEEeecCCCCCcchHHHHHHHHHcCCCCCCCCCCCCcccHH
Q 020661 155 FTKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSEL 234 (323)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~~l~~~~~~~~~~~~~~s~L 234 (323)
|+.||....+.. .+ .++.. .+.......+.+++.+.++|+.++.+++++.++.+++.+||+ +++++||
T Consensus 211 f~~~~~~~~~~~-~~--~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~iLg~--------~~~~srL 278 (424)
T 3amj_B 211 TADLPAGATLPP-LP--DPAMP-RATVERIANPATQAHIAIGMPTLKRGDPDFFPLVVGNYALGG--------GGFESRL 278 (424)
T ss_dssp TTTSCCCCCCCC-CC--CCCCC-CCEEEEEECSSSEEEEEEEEEEEBTTCTTHHHHHHHHHHHTT--------SGGGSHH
T ss_pred HhcCCCCCCCCC-CC--CCCCC-CCceEEeeCCCCccEEEeeccCCCCCCcchHHHHHHHHHhCC--------CCccchh
Confidence 999986443322 11 11111 222333334558899999999888889999999999999984 2378999
Q ss_pred HHHhcc-ccceehhcccccCCCCcccEEEEeecCcccHHHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHccCCCCCCC
Q 020661 235 AQRVGI-NEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAY-RVSEADVTRARNQVAASLPTYPGYL 312 (323)
Q Consensus 235 ~~~lre-~g~~y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~is~~el~~ak~~~~~~~~~~~~~~ 312 (323)
++.||+ +|++|++++.+..+.+.+.|.+++.++++++.++++.+.++++++.+ +++++||+++|+.++.++....+++
T Consensus 279 ~~~lR~~~gl~y~v~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~ 358 (424)
T 3amj_B 279 MKEIRDKRGLSYGAYSYFSPQKSMGLFQIGFETRAEKADEAVQVANDTLDAFLREGPTDAELQAAKDNLINGFALRLDSN 358 (424)
T ss_dssp HHHHTTTTCCEEEEEEEECCBSSCEEEEEEEEEESTTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSGGGGSSH
T ss_pred HHHHHHhCCeEEEeeeeeccCCCceeEEEEEEeCcccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhHhcCCH
Confidence 999996 89999999887777778999999999999999999999999999998 9999999999999999999887775
Q ss_pred Cc
Q 020661 313 DI 314 (323)
Q Consensus 313 ~~ 314 (323)
..
T Consensus 359 ~~ 360 (424)
T 3amj_B 359 AK 360 (424)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 10
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=100.00 E-value=3e-41 Score=303.44 Aligned_cols=301 Identities=14% Similarity=0.179 Sum_probs=260.7
Q ss_pred CccccCCCC-ChHHHHHHHHhc-CCeeeeeeccee----EEEEEEeccc-------cHHHHHHHHHHHhhCCC-----CC
Q 020661 1 MIFKGTEKR-TARDLEEEIENM-GGHLNAYTSREQ----TTYYAKVLDK-------DVNNALDILADILQNST-----FD 62 (323)
Q Consensus 1 ~~f~Gt~~~-~~~~~~~~l~~~-g~~~~~~t~~~~----~~~~~~~~~~-------~l~~~l~ll~~~l~~p~-----~~ 62 (323)
|+|+||+++ +..++.+.++.+ |+.+|++|+.+. +.|+++++++ +++.+|+++.+++.+|. |+
T Consensus 49 ~l~~gt~~~~~~~~~~~~l~~~~G~~~~a~t~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~f~ 128 (425)
T 3d3y_A 49 LMETNSLNYPNQVKLSERLAELYGASFGIGVSKKGNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFE 128 (425)
T ss_dssp HHHHCCSSSCSHHHHHHHHHHTTSCEEEEEEEEETTEEEEEEEEEEECGGGCSSCCHHHHHHHHHHHHHHSCSEETTEEC
T ss_pred HHHhhhhcCCCHHHHHHHHHHHhCceEeeeeeecCceEEEEEEEEecChhhccchhHHHHHHHHHHHHHhCcccccCCCC
Confidence 578999999 788999999998 999999999888 5899999987 69999999999999999 99
Q ss_pred hHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHhc-CCCCCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEcC
Q 020661 63 QARITRERDVILREMEEVEGQTEEVIFDHLHATAF-QYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGA 141 (323)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~ 141 (323)
+++|+++|+.+.++++....+|...+.+.+...+| +++|++++..|+.+.|++++.++|++||+++|.|+|++++|+||
T Consensus 129 ~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~ 208 (425)
T 3d3y_A 129 AETFQREKENLKAYLESIVEDKQTYASLALQSVYFNQSEDQKIPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGD 208 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTTTCTTTTSCTTCCHHHHHHCCHHHHHHHHHHHHHHSEEEEEEEES
T ss_pred HHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhccCCCCccCCCCCCHHHHHhCCHHHHHHHHHHHHhcCCeEEEEECC
Confidence 99999999999999999888999999999999999 78999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCcccccccCCCccccCCceeeecCCCCceEEEEEeecC-CCCCcchHHHHHHHHHcCCC
Q 020661 142 VKHEEVVEQVKKLFTKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGA-SWTDPDSIALMVMQAMLGSW 220 (323)
Q Consensus 142 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~vl~~~l~~~ 220 (323)
++++++.+++ ++|+ ||..+.+..+.+. ..+............+.+++++.++|+.+ ++++++.+++.|++.+||+
T Consensus 209 ~~~~~~~~~~-~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vl~~iLg~- 284 (425)
T 3d3y_A 209 VNEAELVPLF-KQLP-FTPREEGKAAIFY-NQPIRNVIEERTEREVLAQSKLNLAYNTDIYYGDSYYFALQVFNGIFGG- 284 (425)
T ss_dssp CCHHHHHHHH-HTSC-CCCCCCCCCCSCC-CCCCCSSCEEEEEEEECSSEEEEEEEECCCCTTSTTHHHHHHHHHHHTT-
T ss_pred CCHHHHHHHH-HhCC-CCccccccccccc-cccCCCcceeEEecCCccccEEEEEeecCCCCCCchHHHHHHHHHHhCC-
Confidence 9999999999 9999 9864432211111 11111112223334456889999999985 6888999999999999985
Q ss_pred CCCCCCCCCcccHHHHHhcc-ccceehhcccccCCCCcccEEEEeecCcccHHHHHHHHHHHHHHhcc-CCCHHHHHHHH
Q 020661 221 NKNSVGGKHMGSELAQRVGI-NEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAY-RVSEADVTRAR 298 (323)
Q Consensus 221 ~~~~~~~~~~~s~L~~~lre-~g~~y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~is~~el~~ak 298 (323)
+++++||++||+ +|++|++++.+.. ..|.|.+++.++|+++.++++.+.++++++.+ +++++||+++|
T Consensus 285 --------~~~s~L~~~lRe~~glaY~v~~~~~~--~~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~el~~ak 354 (425)
T 3d3y_A 285 --------FPHSKLFMNVREKEHLAYYASSSIDT--FRGFMTVQTGIDGKNRNQVLRLISTELENIRLGKIRELEIEQTK 354 (425)
T ss_dssp --------STTSHHHHHTTTTSCCCSEEEEEEET--TTTEEEEEEEECGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred --------ChhhHHHHHHHHhcCeEEEEeccccc--cCceEEEEEecCHhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 468999999996 7999999887653 46889999999999999999999999999998 99999999999
Q ss_pred HHHHHccCCCCCCCCcc
Q 020661 299 NQVAASLPTYPGYLDIC 315 (323)
Q Consensus 299 ~~~~~~~~~~~~~~~~~ 315 (323)
+.++.++....+++..+
T Consensus 355 ~~~~~~~~~~~~~~~~~ 371 (425)
T 3d3y_A 355 AMLKNQYILALDNAGAW 371 (425)
T ss_dssp HHHHHHHHHHTSCHHHH
T ss_pred HHHHHhHHhcccCHHHH
Confidence 99999988877776543
No 11
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=100.00 E-value=3e-41 Score=304.06 Aligned_cols=303 Identities=22% Similarity=0.412 Sum_probs=259.8
Q ss_pred CccccCCCCChHHHHHHHHhcCCeeeeeecceeEEEEEEeccccHHHHHHHHHHHhhCCC---CChHHHHHHHHHHHHHH
Q 020661 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNST---FDQARITRERDVILREM 77 (323)
Q Consensus 1 ~~f~Gt~~~~~~~~~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~---~~~~~~~~~~~~~~~~~ 77 (323)
|+|+||.+ ..++..|+.+|++|+.+++.|++++++++++.+|+++.+++.+|. |++++|+++|+.+++++
T Consensus 50 ~l~~gt~~-------~~~~~~G~~~na~t~~~~t~~~~~~~~~~l~~~l~ll~~~~~~p~~~~f~~~~~~~ek~~v~~e~ 122 (431)
T 3cx5_A 50 IFLSKENS-------AVAAKEGLALSSNISRDFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATKKSVLKQV 122 (431)
T ss_dssp HHTSHHHH-------HHHHHTTCEEEEEECSSCEEEEEEECSTTHHHHHHHHHHHHHTCSTTTTCHHHHHHHHHHHHHHH
T ss_pred HHhcCCCc-------ccHHHcCCeeeeeecCCeEEEEEEechhhHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHH
Confidence 45666532 246789999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHhhCCh-HHHHHHHHHHHhcCCCCCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHHHHhc
Q 020661 78 EEVEGQT-EEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFT 156 (323)
Q Consensus 78 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~~~~~ 156 (323)
+....+| ...+.+.+...+|+++|+++++.|+.+.|++++.++|++||+++|.|+|++++|+||++++++.++++++|+
T Consensus 123 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~ 202 (431)
T 3cx5_A 123 QDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTLESLENLVVADLESFANNHFLNSNAVVVGTGNIKHEDLVNSIESKNL 202 (431)
T ss_dssp HHHHHHCHHHHHHHHHHHHHTTTSGGGSCTTCCHHHHHTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHTTSCC
T ss_pred HhhhcCchhHHHHHHHHHHhcCCCCCCCCCCCCHHHHhhCCHHHHHHHHHhcCCCCcEEEEEEcCCCHHHHHHHHHHHhC
Confidence 9988899 999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCCCCCcccccccCCCccccCCceeeecCCCCceEEEEEeecCCCCCcchHHHHHHHHHcCCCCCCCCCCCCcccHHHH
Q 020661 157 KLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQ 236 (323)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~~l~~~~~~~~~~~~~~s~L~~ 236 (323)
.||..+.+.. . .++...+..+.+...+.+++.+.++|+.+++++++..++.+++.+|++++.....+++++++|++
T Consensus 203 ~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~iL~~~~~~~~~~~~~~s~L~~ 278 (431)
T 3cx5_A 203 SLQTGTKPVL---K-KKAAFLGSEVRLRDDTLPKAWISLAVEGEPVNSPNYFVAKLAAQIFGSYNAFEPASRLQGIKLLD 278 (431)
T ss_dssp CSSCSCCCCC---C-CCCCCCCEEEEEECTTSSSEEEEEEEECCCTTCTTHHHHHHHHHHHCEEETTCTTGGGSSCTHHH
T ss_pred CCCCCCCCCC---C-CCCcccCceEEEcCCCCCceEEEEEeecCCCCCccHHHHHHHHHHcCCCccCCCCccccccHHHH
Confidence 8876443221 1 12222333333434456789999999999889999999999999998643322222347899999
Q ss_pred HhccccceehhcccccCCCCcccEEEEeecCc-ccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCC--CCCCCC
Q 020661 237 RVGINEIAESMMAFNTNYKDTGLFGVYAVAKP-DCLDDLAYAIMYETTKLAYRVSEADVTRARNQVAASLPT--YPGYLD 313 (323)
Q Consensus 237 ~lre~g~~y~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~l~~~is~~el~~ak~~~~~~~~~--~~~~~~ 313 (323)
.||++|++|++++.+..+.+.+.|.+++.+++ +++.++++.+.++++++.++++++||+++|+.++.++.. ..+++.
T Consensus 279 ~lRe~gl~y~v~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~~~t~~el~~ak~~~~~~~~~~~~~~~~~ 358 (431)
T 3cx5_A 279 NIQEYQLCDNFNHFSLSYKDSGLWGFSTATRNVTMIDDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYESGNPV 358 (431)
T ss_dssp HHHTTTCCSEEEEEEEECSSCEEEEEEEEESCTTCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHSCSCHH
T ss_pred HHHhcCceeeEeEeecccCCCceEEEEEeeCchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCHH
Confidence 99998999999887766677899999999999 999999999999999987799999999999999999988 777765
Q ss_pred c
Q 020661 314 I 314 (323)
Q Consensus 314 ~ 314 (323)
.
T Consensus 359 ~ 359 (431)
T 3cx5_A 359 N 359 (431)
T ss_dssp H
T ss_pred H
Confidence 4
No 12
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=9.9e-40 Score=320.56 Aligned_cols=299 Identities=16% Similarity=0.185 Sum_probs=259.4
Q ss_pred CccccCCCCC-hHHHHHHHHhcCCeeeeeecceeEEEEEEeccccHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHH
Q 020661 1 MIFKGTEKRT-ARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEE 79 (323)
Q Consensus 1 ~~f~Gt~~~~-~~~~~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~~~~~~~~~~~~~~~ 79 (323)
|+|+||++++ ..++.++++.+|+.+|++|+.|+|.|++++++++++.+|+++++++.+|.|++++++++|..+.+|++.
T Consensus 70 mlf~Gt~~~p~~~~~~~~l~~~Gg~~NA~T~~d~T~y~~~~~~~~l~~~L~~l~d~~~~p~f~~~~~~~Er~~v~~E~~~ 149 (939)
T 1q2l_A 70 MSLMGSKKYPQADSLAEYLKMHGGSHNASTAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTM 149 (939)
T ss_dssp HTTSCBSSSCSTTHHHHHHHTTTCEEEEEECSSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCSTTHHHHHHHHHHHHHH
T ss_pred HHccCCCCCCCcchHHHHHHHcCCcceEEECCCcEEEEEEeCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence 7999999997 469999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCChHHHHHHHHHHHhcCCCCCCCCCCCCcccccc----CCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHHHHh
Q 020661 80 VEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKT----ITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLF 155 (323)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~----~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~~~~ 155 (323)
..++|..++.+.+...+|++|||+++++|+.+.|+. ++.++|++||++||.|+||+++|+||++++++.++++++|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~G~~~~~~l~~~v~~~f 229 (939)
T 1q2l_A 150 ARTRDGMRMAQVSAETINPAHPGSKFSGGNLETLSDKPGNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTF 229 (939)
T ss_dssp HTTSHHHHHHHHHHHSSCTTSGGGSCCSCCHHHHSCBTTBCHHHHHHHHHHHHCCTTTCEEEEEESSCHHHHHHHHHHTG
T ss_pred ccCCHHHHHHHHHHHhcCCCCCCccCCCCCHHHHhcCCCchHHHHHHHHHHhccCHhheEEEEEcCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccccccCCCccccCCceee-ecCCCCceEEEEEeecCCCCCc-chHHHHHHHHHcCCCCCCCCCCCCcccH
Q 020661 156 TKLSADPTTASQLVANEPAIFTGSEVRI-IDDDIPLAQFAVAFAGASWTDP-DSIALMVMQAMLGSWNKNSVGGKHMGSE 233 (323)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~-~~~~~~vl~~~l~~~~~~~~~~~~~~s~ 233 (323)
+.||....+.+.... ++.........+ ..+..++..+.++|+.++..+. +..++.+++.+||+ +..++
T Consensus 230 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~l~~lLg~---------~~~s~ 299 (939)
T 1q2l_A 230 GRVPNKESKKPEITV-PVVTDAQKGIIIHYVPALPRKVLRVEFRIDNNSAKFRSKTDELITYLIGN---------RSPGT 299 (939)
T ss_dssp GGSCCCCCCCCCCCS-CSCCGGGSSEEEEECCSSCCCEEEEEEEEECCGGGGGGCHHHHHHHHHHC---------CCTTS
T ss_pred hhhccCCCCCCCCCC-CCCCHHHcCEEEEEEeCCCCcEEEEEEEcCChHHhhhhCHHHHHHHHhcC---------CCCCc
Confidence 999875433221111 111111111223 3345578899999999876554 67788999999985 34789
Q ss_pred HHHHhccccceehhcccc--cCCCCcccEEEEeecCc---ccHHHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHccCC
Q 020661 234 LAQRVGINEIAESMMAFN--TNYKDTGLFGVYAVAKP---DCLDDLAYAIMYETTKLAY-RVSEADVTRARNQVAASLPT 307 (323)
Q Consensus 234 L~~~lre~g~~y~~~~~~--~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~l~~-~is~~el~~ak~~~~~~~~~ 307 (323)
|++.||++|++|++++.. ....+.+.|.+++.+.+ ++.+++++.+.++++++++ +++++|++++|+.+..++..
T Consensus 300 L~~~L~~~gl~~~~~a~~~~~~~~~~g~f~i~~~~~~~~~~~~~~~~~~i~~~l~~l~~~g~~~~el~~~k~~~~~~~~~ 379 (939)
T 1q2l_A 300 LSDWLQKQGLVEGISANSDPIVNGNSGVLAISASLTDKGLANRDQVVAAIFSYLNLLREKGIDKQYFDELANVLDIDFRY 379 (939)
T ss_dssp HHHHHHHTTCEEEEEEEEESSTTSSEEEEEEEEEECHHHHHTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCchheeeccccccCCCceEEEEEEEEChhhhhhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcccc
Confidence 999999999999988863 33466799999999877 5899999999999999998 99999999999999999877
Q ss_pred CC
Q 020661 308 YP 309 (323)
Q Consensus 308 ~~ 309 (323)
..
T Consensus 380 ~~ 381 (939)
T 1q2l_A 380 PS 381 (939)
T ss_dssp CC
T ss_pred cC
Confidence 65
No 13
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=100.00 E-value=2.3e-38 Score=310.30 Aligned_cols=296 Identities=15% Similarity=0.186 Sum_probs=252.3
Q ss_pred CccccCCCCChHHHHHHHHh--cCCeeeeeecceeEEEEEEecc-ccHHHHHHHHHHHhhCCCCChHH--HHHH------
Q 020661 1 MIFKGTEKRTARDLEEEIEN--MGGHLNAYTSREQTTYYAKVLD-KDVNNALDILADILQNSTFDQAR--ITRE------ 69 (323)
Q Consensus 1 ~~f~Gt~~~~~~~~~~~l~~--~g~~~~~~t~~~~~~~~~~~~~-~~l~~~l~ll~~~l~~p~~~~~~--~~~~------ 69 (323)
|||+||++++..++...+.. +|+.+|++|+.|+|.|.+++++ ++++.+|+++.+++.+|.+++++ |.++
T Consensus 134 mlf~GS~k~p~~e~~~~l~~~slG~~lNA~T~~D~T~Y~~~~~~~~~l~~~L~l~~D~v~~P~l~~~~~~F~qE~~~~E~ 213 (1193)
T 3s5m_A 134 SVLSGSKNYNYKNSIGLLEKGTLHTHLNAYTFNDRTVYMAGSMNNKDFFNIMGVYMDSVFQPNVLENKYIFETEGWTYEV 213 (1193)
T ss_dssp HTTSCBTTBCCTTHHHHHHHSCCEEEEEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTCHHHHHHHTCEEEE
T ss_pred HHhCCCCCCChhhHHHHHHHhccCceEEeEEcCCeEEEEEEecCHHHHHHHHHHHHHHHhCCCCccccchhhhhhhhhhh
Confidence 78999999999999999988 8999999999999999999887 99999999999999999999877 7776
Q ss_pred -----------------------HHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCCCCCCCCCccccccCCHHHHHHHHH
Q 020661 70 -----------------------RDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIH 126 (323)
Q Consensus 70 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~l~~~~~ 126 (323)
|.++++|++...++|...+.+.+...+|++|||+++..|+++.|..++.++|++||+
T Consensus 214 e~~~~~Er~~~~~~~~~~~~l~~k~vV~~E~k~~~~~p~~~~~~~l~~~lf~~hpY~~~~~G~~e~I~~lt~edl~~F~~ 293 (1193)
T 3s5m_A 214 EKLKEDEKGKAEIPQMKDYKVSFNGIVYNEMKGALSSPLEDLYHEEMKYMFPDNVHSNNSGGDPKEITNLTYEEFKEFYY 293 (1193)
T ss_dssp EECCTTTTTCTTSCEETTEEEEEECHHHHHHHHHTTCHHHHHHHHHHHHHCTTSGGGSCTTCCHHHHTTCCHHHHHHHHH
T ss_pred hccchhhhccccccccccchhhHHHHHHHHHHHhhCCHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHhhCCHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCceEEEEEcCCCHHHHHHHHHHHhcCCCCCCCccc---ccccCCCccccCCc-eeee---cCCCCceEEEEEeec
Q 020661 127 THYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSADPTTAS---QLVANEPAIFTGSE-VRII---DDDIPLAQFAVAFAG 199 (323)
Q Consensus 127 ~~~~~~~~~l~i~G~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~---~~~~~~~~v~~~~~~ 199 (323)
++|.|+|++++++||++++++.++++++|+.|+.++.... +.+. ++ +..++. +... ..+.++..+.++|+.
T Consensus 294 ~~Y~P~Na~l~v~Gdid~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~-~~-~~~~~~~v~~~~~~~~~~~q~~l~~~~~~ 371 (1193)
T 3s5m_A 294 KNYNPKKVKVFFFSKNNPTELLNFVDQYLGQLDYSKYRDDAVESVEY-QT-YKKGPFYIKKKYGDHSEEKENLVSVAWLL 371 (1193)
T ss_dssp HHSCTTTCEEEEEESSCTHHHHHHHHHHHTTCCGGGCCCCCCCCCCC-CB-CCCCCEEEEEEEECCCSSCCEEEEEEEES
T ss_pred HhcCccceEEEEEecCCHHHHHHHHHHHhccCCCCCCCcccccccCC-CC-CCCCCeEEEEecCCCCCccccEEEEEEEe
Confidence 9999999999999999999999999999999986433211 1111 11 122222 2221 134678999999998
Q ss_pred CCC-----C-----------------------------CcchHHHHHHHHHcCCCCCCCCCCCCcccHHHHHhcccccee
Q 020661 200 ASW-----T-----------------------------DPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAE 245 (323)
Q Consensus 200 ~~~-----~-----------------------------~~~~~~~~vl~~~l~~~~~~~~~~~~~~s~L~~~lre~g~~y 245 (323)
++. + ++++.++.|++.+|++ +.+|||++.||++|++|
T Consensus 372 ~~~~~~~~d~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~d~~al~vL~~iLgg---------g~sSrL~~~L~e~gLa~ 442 (1193)
T 3s5m_A 372 NPKVDKTNNHNNNHSNNQSSENNGYSNGSHSSDLSLENPTDYFVLLIINNLLIH---------TPESVLYKALTDCGLGN 442 (1193)
T ss_dssp SCBCC----------------------CCCCSTTCCCSHHHHHHHHHHHHHHHS---------STTSHHHHHHHHHCSCS
T ss_pred cCcccccccccccccccccccccccccccccccccccCccHHHHHHHHHHHHCC---------CCCCHHHHHHHhcCCee
Confidence 753 2 4789999999999984 46999999999999999
Q ss_pred hhc-ccccCCCCcccEEEEee-cCccc--------H-HHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHccCC
Q 020661 246 SMM-AFNTNYKDTGLFGVYAV-AKPDC--------L-DDLAYAIMYETTKLAY-RVSEADVTRARNQVAASLPT 307 (323)
Q Consensus 246 ~~~-~~~~~~~~~~~~~i~~~-~~~~~--------~-~~~~~~~~~~~~~l~~-~is~~el~~ak~~~~~~~~~ 307 (323)
+++ +.+......+.|.+++. +++++ + +++.+.+.++++++.+ ||++++|+++|.++..++..
T Consensus 443 ~v~~~~~~~~~~~~~f~i~~~g~~~~~~~~~~~~~~~~~~~~~I~~~L~~l~~~gi~~~ele~a~~~le~~~re 516 (1193)
T 3s5m_A 443 NVIDRGLNDSLVQYIFSIGLKGIKRNNEKIKNFDKVHYEVEDVIMNALKKVVKEGFNKSAVEASINNIEFILKE 516 (1193)
T ss_dssp EEEEEEEECSSSSCEEEEEEEEECTTCTTCSCGGGHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred eecccccccccCCcEEEEEEecCChhhccccchhhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 987 56666667788888864 54433 6 6999999999999999 99999999999999988765
No 14
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=4.6e-38 Score=310.21 Aligned_cols=296 Identities=17% Similarity=0.194 Sum_probs=252.4
Q ss_pred CccccCCCCChHH-HHHHHHh-cCCeeeeeecceeEEEEEEec-cccHHHHHHHHHHHhhCCCC--ChHHHHHH------
Q 020661 1 MIFKGTEKRTARD-LEEEIEN-MGGHLNAYTSREQTTYYAKVL-DKDVNNALDILADILQNSTF--DQARITRE------ 69 (323)
Q Consensus 1 ~~f~Gt~~~~~~~-~~~~l~~-~g~~~~~~t~~~~~~~~~~~~-~~~l~~~l~ll~~~l~~p~~--~~~~~~~~------ 69 (323)
|+|+||++++..+ +.+.+.. .|+.+|++|+.|+|.|.+.++ +++++.+|.++.+++.+|.| +++.|+++
T Consensus 82 m~f~Gt~~~p~~~~~~~~l~~~~g~~~NA~T~~d~T~y~~~~~~~~~~~~~l~~~~d~~~~p~~~~~~~~~~~E~~~~e~ 161 (995)
T 2fge_A 82 SVLCGSRKYPVKEPFVELLKGSLHTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHYEL 161 (995)
T ss_dssp HTTSCBTTBCSSCHHHHHHHHCCEEEECCEECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTSSHHHHHHTCEEEC
T ss_pred HHhCCCCCCCCccHHHHHHHhccCCCceeeECCCceEEEEecCCHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhhhhhhc
Confidence 7899999999777 4555554 688999999999999999886 57999999999999999999 99999999
Q ss_pred ---------HHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEc
Q 020661 70 ---------RDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASG 140 (323)
Q Consensus 70 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G 140 (323)
|..+++|++...++|..++.+.+...+|++|||+++++|+.+.|+.++.++|++||++||.|+||+++|+|
T Consensus 162 ~~~~~~~~~r~vV~~E~~~~~~~p~~~~~~~~~~~~~~~~py~~~~~G~~~~i~~~t~~~l~~f~~~~Y~p~n~~l~v~G 241 (995)
T 2fge_A 162 NDPSEDISYKGVVFNEMKGVYSQPDNILGRIAQQALSPENTYGVDSGGDPKDIPNLTFEEFKEFHRQYYHPSNARIWFYG 241 (995)
T ss_dssp SCTTSCCEEECHHHHHHHHHTTSHHHHHHHHHHHHHCTTSGGGSCTTCCTTTGGGCCHHHHHHHHHHHSSGGGEEEEEEE
T ss_pred ccccccccccchHHHHHHhhhCCHHHHHHHHHHHHhCCCCCCCCCCCCChHhhhhcCHHHHHHHHHHhCCccceEEEEEc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCC--CCCCcccccccCCCccccCCc---eee-e---cCCCCceEEEEEeecCCCC--CcchHH
Q 020661 141 AVKHEEVVEQVKKLFTKLS--ADPTTASQLVANEPAIFTGSE---VRI-I---DDDIPLAQFAVAFAGASWT--DPDSIA 209 (323)
Q Consensus 141 ~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~-~---~~~~~~~~v~~~~~~~~~~--~~~~~~ 209 (323)
|++++++.++++++|+.|+ ..+.+.. .+ ..+++.... ... . .+..+++.+.++|+.+... ++++.+
T Consensus 242 d~d~~~~~~~i~~~f~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a 318 (995)
T 2fge_A 242 DDDPVHRLRVLSEYLDMFEASPSPNSSK-IK--FQKLFSEPVRLVEKYPAGRDGDLKKKHMLCVNWLLSEKPLDLQTQLA 318 (995)
T ss_dssp SSCHHHHHHHHHHHHTTCCCCSHHHHSC-CC--CCCCCSSCEEEEEEEECCSSSCGGGCEEEEEEEECCSSCCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCCccccCCCcc-cC--CCCCCCCCceEEEecccCCCCCccCccEEEEEEEcCCCcCCHHHHHH
Confidence 9999999999999999998 4221111 00 111122221 111 1 3335789999999998876 589999
Q ss_pred HHHHHHHcCCCCCCCCCCCCcccHHHHHhccccceehhccc-ccCCCCcccEEEE-eecCcccHHHHHHHHHHHHHHhcc
Q 020661 210 LMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAF-NTNYKDTGLFGVY-AVAKPDCLDDLAYAIMYETTKLAY 287 (323)
Q Consensus 210 ~~vl~~~l~~~~~~~~~~~~~~s~L~~~lre~g~~y~~~~~-~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~l~~ 287 (323)
+.+++.+|++ +.+|||++.||+.|++|++++. +......+.|.+. ..+++++.+++++.+.++++++++
T Consensus 319 ~~vl~~~Lg~---------~~~S~L~~~l~e~gl~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~i~~~l~~l~~ 389 (995)
T 2fge_A 319 LGFLDHLMLG---------TPASPLRKILLESGLGEALVSSGLSDELLQPQFGIGLKGVSEENVQKVEELIMDTLKKLAE 389 (995)
T ss_dssp HHHHHHHHHS---------STTSHHHHHHHHTTSCSEECSCEEECSSSSCEEEEEEEEECGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC---------CCCCHHHHHHHhcCCCcceeeccccccccCeEEEEEEEeCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999974 4689999999988999998876 5555557888875 467889999999999999999999
Q ss_pred -CCCHHHHHHHHHHHHHccCCC
Q 020661 288 -RVSEADVTRARNQVAASLPTY 308 (323)
Q Consensus 288 -~is~~el~~ak~~~~~~~~~~ 308 (323)
+|+++||+++|+++..++...
T Consensus 390 ~g~~~~el~~ak~~~~~~~~~~ 411 (995)
T 2fge_A 390 EGFDNDAVEASMNTIEFSLREN 411 (995)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHC
T ss_pred hCCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999888754
No 15
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=100.00 E-value=8.4e-38 Score=285.38 Aligned_cols=289 Identities=15% Similarity=0.134 Sum_probs=236.2
Q ss_pred CccccCCCCChHHHHHHHH----hcCCeeeeeecceeEEEEEEecc---ccHHHHHHHHHHHhhCCCCChHHHHHHHHHH
Q 020661 1 MIFKGTEKRTARDLEEEIE----NMGGHLNAYTSREQTTYYAKVLD---KDVNNALDILADILQNSTFDQARITRERDVI 73 (323)
Q Consensus 1 ~~f~Gt~~~~~~~~~~~l~----~~g~~~~~~t~~~~~~~~~~~~~---~~l~~~l~ll~~~l~~p~~~~~~~~~~~~~~ 73 (323)
|||+||++++..++.+.++ ..|+.+|++|+.|++.|++++++ ++++.+|++|++++.+|.|++++++++|..+
T Consensus 77 mlf~GT~~~~~~~~~~~~~~~~~~~G~~~na~t~~d~t~y~~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~~ 156 (492)
T 3go9_A 77 LALMSSASFTPAQLQSLWQQGIDNERPLPPAITSYDFTLYSLSLPNNRPDLLKDALAWLSDTAGNLAVSEQTVNAALNTA 156 (492)
T ss_dssp HHHHCCTTCCHHHHHHHHHTCSCSSSCCCSEEECSSCEEEEEEECTTCHHHHHHHHHHHHHHHHCCCCSHHHHHHHHTCS
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhcCCCcceEeCCCeEEEEEECCCCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 7899999999999998766 47899999999999999999998 7899999999999999999999999999987
Q ss_pred HHHHHHhhCChHHHHHHHHHHHhcCCCCCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHHH
Q 020661 74 LREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKK 153 (323)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~~ 153 (323)
.++++....+|....+ ...+++.++++++.. .+.|++++.++|++||++||.|+||+++|+||++++++.+++++
T Consensus 157 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~i~~it~~dL~~fy~~~Y~p~n~~l~vvGdvd~~~~~~~i~~ 231 (492)
T 3go9_A 157 TDPIATFPQNIQEPWW---RYRLKGSSLIGHDPG--QPVTQPVDVEKLKQFYQQWYTPDAMTLYVVGNVDSRSIAAQISK 231 (492)
T ss_dssp SCCEEESSSCTTCHHH---HHHTTTSTTTTCCTT--CCCCSSCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHH
T ss_pred HHHHHhcccchhhHHH---HHHhccCCcccCCCc--hhhhhcCCHHHHHHHHHHhcCcCceEEEEEcCCCHHHHHHHHHH
Confidence 7777665566654333 344566666666653 26799999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCcccccccCCCccccCCceeeecCCCCceEEEEEeecCCCCCcchHHH------HHHHHHcCCCCCCCCCC
Q 020661 154 LFTKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIAL------MVMQAMLGSWNKNSVGG 227 (323)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------~vl~~~l~~~~~~~~~~ 227 (323)
+|+.||.+.....+.+. .++.....+.+...+.+++++.++|+.+..+++|+.++ .+++.+|+
T Consensus 232 ~f~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~q~~v~l~~~~~~~~~~d~~~l~~~~~~~v~~~iLg--------- 300 (492)
T 3go9_A 232 AFSELKGKRTAPAAVAT--LAPLPPEPVSLMNEQAAQDTLSLMWDTPWHPIQDSMALSRYWRSDLAREALF--------- 300 (492)
T ss_dssp HHTTCCCCCSSCCCCCC--CCCCCSSCEEEEESSCSSEEEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHH---------
T ss_pred HhhcCCCCCCCCCCCCC--CCCCCCCceEEEcCCCCCcEEEEEecCCCCCcccHHHHHHHHHHHHHHHHHH---------
Confidence 99999875432221121 12223344455566778999999999998888877665 79999996
Q ss_pred CCcccHHHHHhcc---ccceehhcccccCCCCcccEEEEeecCcccHHHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHH
Q 020661 228 KHMGSELAQRVGI---NEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAY-RVSEADVTRARNQVAA 303 (323)
Q Consensus 228 ~~~~s~L~~~lre---~g~~y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~is~~el~~ak~~~~~ 303 (323)
++|++++|+ +|++|++++.+....+.+.| ++.+++++.+++++.+.++++++++ ++|++||+++|+.+++
T Consensus 301 ----~~L~~~lre~~~~gl~y~~~s~~~~~~~~~~~--~i~~~~~~~~~a~~~i~~el~~l~~~g~te~EL~~aK~~~~~ 374 (492)
T 3go9_A 301 ----WHIKQVLEKNNQKNLKLGFDCRVQYQRAQCAI--HLNTPVENLTANMTFVARELAALRANGLSQAEFDALMTQKND 374 (492)
T ss_dssp ----HHHHHHHHHSCCTTCEEEEEEEEETTEEEEEE--EEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHhhccccccccCchhhhhhcceEE--EEEcCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 689999985 68999998876654444544 4455789999999999999999999 9999999999999999
Q ss_pred ccCCCCCC
Q 020661 304 SLPTYPGY 311 (323)
Q Consensus 304 ~~~~~~~~ 311 (323)
++....++
T Consensus 375 ~l~~~~~~ 382 (492)
T 3go9_A 375 QLSKLFAT 382 (492)
T ss_dssp HHHTHHHH
T ss_pred HHHHHHHH
Confidence 98776443
No 16
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=100.00 E-value=1.9e-36 Score=298.80 Aligned_cols=297 Identities=18% Similarity=0.207 Sum_probs=252.4
Q ss_pred CccccCCCCCh-HHHHHHHHhcCCeeeeeecceeEEEEEEeccccHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHH
Q 020661 1 MIFKGTEKRTA-RDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEE 79 (323)
Q Consensus 1 ~~f~Gt~~~~~-~~~~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~~~~~~~~~~~~~~~ 79 (323)
|+|+||++++. .++.++++.+|+.+|++|+.|+|.|.+++++++++.+|+++++++.+|.|++++++++|..|.+|++.
T Consensus 84 mlf~GT~~~p~~~~~~~~l~~~Gg~~NA~T~~d~T~y~~~~~~~~l~~~l~~~~d~~~~p~f~~~~~~~E~~~V~~E~~~ 163 (990)
T 3cww_A 84 MLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEK 163 (990)
T ss_dssp HGGGCBSSSCSTTHHHHHHHTTTCEEEEEECSSCEEEEEEEEGGGHHHHHHHHHGGGTCBCCCHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCCCcchHHHHHHHcCCceeEEECCCceEEEEEeCHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHh
Confidence 78999999986 79999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCChHHHHHHHHHHHhcCCCCCCCCCCCCccccccC-------CHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHH
Q 020661 80 VEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTI-------TKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVK 152 (323)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~-------~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~ 152 (323)
...+|...+.+.+...++++|||+++.+|+.+.|+.+ +.++|++||++||.|+||+++|+||+++++++++++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~py~~~~~G~~~~l~~~~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~Gd~~~~~~~~~i~ 243 (990)
T 3cww_A 164 NVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVV 243 (990)
T ss_dssp HHTCHHHHHHHHHHHTSCTTSGGGCCCSCCHHHHTHHHHHTTCCHHHHHHHHHHHHCCGGGEEEEEEESSCHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHhcCCCCCcccCCCCCHHHHhhccccccchHHHHHHHHHHHhCCHhheEEEEEcCCCHHHHHHHHH
Confidence 8899999998888899999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCcccccccCCCccccC--CceeeecCCCCceEEEEEeecCCCC-CcchHHHHHHHHHcCCCCCCCCCCCC
Q 020661 153 KLFTKLSADPTTASQLVANEPAIFTG--SEVRIIDDDIPLAQFAVAFAGASWT-DPDSIALMVMQAMLGSWNKNSVGGKH 229 (323)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~vl~~~l~~~~~~~~~~~~ 229 (323)
++|+.|+....+..... .++.... +......+..++..+.++|+.++.. +.+..++.+++.+||+. +
T Consensus 244 ~~f~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~lLg~~--------~ 313 (990)
T 3cww_A 244 KLFSEVENKNVPLPEFP--EHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHE--------G 313 (990)
T ss_dssp HHHTTSCCCCCCCCCCC--SCSSCGGGSSEEEEECCSSSCCEEEEEEEECCCGGGTTTCHHHHHHHHHTCC--------S
T ss_pred HHhcCCccCCCCCCCCC--CCCCChHHcCeEEEEEECCCCcEEEEEEEcCChhhhhhhCHHHHHHHHhcCC--------C
Confidence 99999987544322111 1111111 1222233444678999999998876 46788999999999741 2
Q ss_pred cccHHHHHhccccceehhcccccC-CCCcccEEEEeecCc---ccHHHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHc
Q 020661 230 MGSELAQRVGINEIAESMMAFNTN-YKDTGLFGVYAVAKP---DCLDDLAYAIMYETTKLAY-RVSEADVTRARNQVAAS 304 (323)
Q Consensus 230 ~~s~L~~~lre~g~~y~~~~~~~~-~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~l~~-~is~~el~~ak~~~~~~ 304 (323)
.++ |++.||++|++|++++.+.. ..+.+.|.+++.+.+ ++.+++++.+.++++++++ +++++++++++......
T Consensus 314 ~~s-l~~~Lr~~g~~~~~~a~~~~~~~~~~~f~i~~~~~~~g~~~~~~~~~~i~~~l~~l~~~g~~~~~l~~~~~~~~~~ 392 (990)
T 3cww_A 314 PGS-LLSELKSKGWVNTLVGGQKAGARGFMFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQELKDLNAVA 392 (990)
T ss_dssp TTC-HHHHHHHTTSCSCEEEEEEEEETTEEEEEEEEECCHHHHHTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCc-HHHHHHHCCCcceeeeccccCCCCccEEEEEEEEChHHhhhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 234 67799999999998886653 345688999988765 4899999999999999999 99999999998877776
Q ss_pred cCCC
Q 020661 305 LPTY 308 (323)
Q Consensus 305 ~~~~ 308 (323)
+...
T Consensus 393 ~~~~ 396 (990)
T 3cww_A 393 FRFK 396 (990)
T ss_dssp HHTC
T ss_pred cccC
Confidence 6553
No 17
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=100.00 E-value=2.3e-36 Score=265.12 Aligned_cols=278 Identities=20% Similarity=0.256 Sum_probs=230.5
Q ss_pred CccccCCCCChHHHHHHHHhcCCeeeeeecceeEEEEEEeccccHHHHHHHHHHHhhCCCCChHHHH-HHHHHHHHHHHH
Q 020661 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARIT-RERDVILREMEE 79 (323)
Q Consensus 1 ~~f~Gt~~~~~~~~~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~~~-~~~~~~~~~~~~ 79 (323)
|+|+||++++..++.+.++.+|+.+|++|+.+++.|++++++++++.+|+++++++.+|.|++++|+ ++|..++++++.
T Consensus 38 ~lf~Gt~~~~~~~l~~~l~~~G~~~na~t~~~~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~~~k~~v~~e~~~ 117 (352)
T 3cx5_B 38 FNFQNTNTRSALKLVRESELLGGTFKSTLDREYITLKATFLKDDLPYYVNALADVLYKTAFKPHELTESVLPAARYDYAV 117 (352)
T ss_dssp HTTSCBSSSCHHHHHHHHHHHTCEEEEEECSSCEEEEEEEEGGGHHHHHHHHHHHHHHBCCCHHHHHHTHHHHHHHHHHH
T ss_pred HhccCcCCCCHHHHHHHHHHhCCeEEEEEccceEEEEEEechhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred hhCChHHHHHHHHHHHhcCCCCCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHH-HHHhcCC
Q 020661 80 VEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQV-KKLFTKL 158 (323)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v-~~~~~~~ 158 (323)
..++|...+.+.+...+|+ +||+++.. .+.|++++.++|++||+++|.|+|++++++| ++++++.+++ +++|+.|
T Consensus 118 ~~~~p~~~~~~~~~~~~~~-~p~~~~~~--~~~l~~it~~~l~~f~~~~y~~~n~~l~v~G-~~~~~~~~~i~~~~f~~~ 193 (352)
T 3cx5_B 118 AEQCPVKSAEDQLYAITFR-KGLGNPLL--YDGVERVSLQDIKDFADKVYTKENLEVSGEN-VVEADLKRFVDESLLSTL 193 (352)
T ss_dssp HHTCHHHHHHHHHHHHHHT-TTTTSCSS--CCSSSCCCHHHHHHHHHHHCCGGGEEEEEES-SCHHHHHHHHHHSTTTTS
T ss_pred HhcCHHHHHHHHHHHHHhC-CCCCCccc--hhhhccCCHHHHHHHHHHhCCcCcEEEEEeC-CCHHHHHHHHHHHhhccC
Confidence 9999999999999999997 89998874 7899999999999999999999999999999 9999999999 8999999
Q ss_pred CCCCCcccccccCCCccccCCceeeecCCCCceEEEEEeecCCCCCcchHHHHHHHHHcCCCCCCCCCCCCcccHHHHHh
Q 020661 159 SADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRV 238 (323)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~~l~~~~~~~~~~~~~~s~L~~~l 238 (323)
|....+.... .++...+....+ .. ..++.+.++ +++++++++++.|++.+|| . +|
T Consensus 194 ~~~~~~~~~~---~~~~~~~~~~~~-~~-~~~~~~~~~---~~~~~~~~~~l~vl~~iLg------------~-----~l 248 (352)
T 3cx5_B 194 PAGKSLVSKS---EPKFFLGEENRV-RF-IGDSVAAIG---IPVNKASLAQYEVLANYLT------------S-----AL 248 (352)
T ss_dssp CCCCCCCCCS---CCCCCCSCEEEE-EC-SSSEEEEEE---EEECTTTHHHHHHHHHHHH------------S-----TT
T ss_pred CCCCCCCCCC---CCCCccCCeEEE-ec-CCCceEEEe---cCCCChhHHHHHHHHHHhC------------c-----ch
Confidence 8644332111 112222333333 22 245555554 3456789999999999996 2 67
Q ss_pred cc-ccceehhcccccCCCCcccEEEEeecCcccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCCCCCCCCc
Q 020661 239 GI-NEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQVAASLPTYPGYLDI 314 (323)
Q Consensus 239 re-~g~~y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~is~~el~~ak~~~~~~~~~~~~~~~~ 314 (323)
|+ .|++ +++.+..+.+.|.|.+++.++ +.+++.+.+.++++. +++++||+++|+.++.++..+.+++..
T Consensus 249 re~~gl~--~~~~~~~~~~~g~~~i~~~~~--~~~~~~~~i~~~l~~---~~t~~el~~ak~~~~~~~~~~~~~~~~ 318 (352)
T 3cx5_B 249 SELSGLI--SSAKLDKFTDGGLFTLFVRDQ--DSAVVSSNIKKIVAD---LKKGKDLSPAINYTKLKNAVQNESVSS 318 (352)
T ss_dssp STTGGGC--SEEEEEEETTEEEEEEEEEES--CHHHHHHHHHHHHHH---HHSCEECGGGHHHHHHHHHHHCCSTTC
T ss_pred hcccCce--EEEeecCcCcceeEEEEEEeC--CHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHhhhhccCC
Confidence 85 7776 555555556778999999886 566666666666644 599999999999999999988887643
No 18
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.96 E-value=3.3e-28 Score=240.05 Aligned_cols=286 Identities=13% Similarity=0.019 Sum_probs=224.1
Q ss_pred ccCCCCChHHHHHHHHhcCCeeee-----eecc-----eeEEEEEEeccccHHHHHHHHHHHhhCCCCChH-HHHHHHHH
Q 020661 4 KGTEKRTARDLEEEIENMGGHLNA-----YTSR-----EQTTYYAKVLDKDVNNALDILADILQNSTFDQA-RITRERDV 72 (323)
Q Consensus 4 ~Gt~~~~~~~~~~~l~~~g~~~~~-----~t~~-----~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~-~~~~~~~~ 72 (323)
.||+++++.++.+.++.+.|.+++ +++. +.+.|++++++++++.++++|.+++.+|.|+++ .|++++..
T Consensus 604 ~Gt~~~s~~el~~~l~~~~ggl~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~l~ll~e~l~~p~f~~~~~~~~~~~~ 683 (995)
T 2fge_A 604 MGTKDLTFVQLNQLIGRKTGGISVYPLTSSVRGKDEPCSKIIVRGKSMAGRADDLFNLMNCLLQEVQFTDQQRFKQFVSQ 683 (995)
T ss_dssp SCCSSSCHHHHHHHHHHHSSEEEEEEEEEEETTEEEEEEEEEEEEEEEGGGHHHHHHHHHHHHHHCCSCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhcCceEeeccccccCccccccceEEEEEEEehhhHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 599999999999999965555555 5554 889999999999999999999999999999998 99999999
Q ss_pred HHHHHHHhh-CChHHHHHHHHHHHhcCCCCCCCCCCC-----Cc--------cccccCCHHHHHHHHHhhCCCCceEEEE
Q 020661 73 ILREMEEVE-GQTEEVIFDHLHATAFQYTPLGRTILG-----PA--------QNIKTITKEHLQNYIHTHYTAPRMVIAA 138 (323)
Q Consensus 73 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~--------~~l~~~~~~~l~~~~~~~~~~~~~~l~i 138 (323)
+++++++.. +++...+...+...+.+.+++.....| .. +.++.+ .++|++|++++|.+++++++|
T Consensus 684 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~gl~~~~~~~~l~~~~~e~~~~i-~~~L~~~~~~~~~~~~~~~~v 762 (995)
T 2fge_A 684 SRARMENRLRGSGHGIAAARMDAMLNIAGWMSEQMGGLSYLEFLHTLEKKVDEDWEGI-SSSLEEIRRSLLARNGCIVNM 762 (995)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHTTCHHHHHHHHHHSHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHCCSTTCEEEE
T ss_pred HHHHHHHhhhccHHHHHHHHHHHhCChhHHHHHHHccHHHHHHHHHHHHhhhcCHHHH-HHHHHHHHHHHcCcCCcEEEE
Confidence 999999975 466666677776654444444322111 11 557888 999999999999999999999
Q ss_pred EcCCCH-HHHHHHHHHHhcCC-CCCCCcccccccCCCccccCCceeeecCCCCceEEEEEeecCCCCCcchHHHHHHHHH
Q 020661 139 SGAVKH-EEVVEQVKKLFTKL-SADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAM 216 (323)
Q Consensus 139 ~G~~~~-~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~~ 216 (323)
+||++. +++.++++++|+.+ |....+..+.. .+. +........+....++..+++..++++++++++.|++.+
T Consensus 763 ~Gd~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~--~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~al~vl~~i 837 (995)
T 2fge_A 763 TADGKSLTNVEKSVAKFLDLLPENPSGGLVTWD--GRL---PLRNEAIVIPTQVNYVGKAGNIYSTGYELDGSAYVISKH 837 (995)
T ss_dssp EECHHHHHHHHHHHHHHHHTSCSSCSSCSCCCC--CCC---CCCCEEEECSCSSBEEEEEEEGGGGTCCCCTHHHHHHHH
T ss_pred EeCHHHHHHHHHHHHHHHHhhCccCCCCCCccc--ccC---CccceEEEecCceEEEEEecCCCCCCCcccHHHHHHHHH
Confidence 999994 89999999999999 75433221111 011 111112223355566666777778899999999999999
Q ss_pred cCCCCCCCCCCCCcccHHHHHhccccceehhcccccCCCCcccEE-EEeecCcccHHHHHHHHHHHHHHhcc-CCCHHHH
Q 020661 217 LGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFG-VYAVAKPDCLDDLAYAIMYETTKLAY-RVSEADV 294 (323)
Q Consensus 217 l~~~~~~~~~~~~~~s~L~~~lre~g~~y~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~l~~-~is~~el 294 (323)
|+ .++||+.||++|++|++++.+.. .|.|. +++..+| ++.++++.+.+.++.+++ ++|++||
T Consensus 838 Lg------------~~~L~~~iRe~g~aYg~~s~~~~---~G~~~~~~s~~dp-~~~~~~~~~~~~~~~l~~~~~te~el 901 (995)
T 2fge_A 838 IS------------NTWLWDRVRVSGGAYGGFCDFDS---HSGVFSYLSYRDP-NLLKTLDIYDGTGDFLRGLDVDQETL 901 (995)
T ss_dssp HH------------HTHHHHHTTTTTCCSEEEEEEET---TTTEEEEEEESBS-CSHHHHHHHHTHHHHHHTCCCCHHHH
T ss_pred HC------------CCccHHHhhhcCCCcccceEeCC---CccEEEEEEEcCC-CHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 98 47999999999999999998764 47888 7777777 678888999998888887 9999999
Q ss_pred HHHHHHHHHccCCCCCCC
Q 020661 295 TRARNQVAASLPTYPGYL 312 (323)
Q Consensus 295 ~~ak~~~~~~~~~~~~~~ 312 (323)
+++|..++.++.. .+++
T Consensus 902 ~~ak~~li~~~~~-~~~~ 918 (995)
T 2fge_A 902 TKAIIGTIGDVDS-YQLP 918 (995)
T ss_dssp HHHHHHHHHHHTC-CCCH
T ss_pred HHHHHHHHHhccC-CCCH
Confidence 9999999999843 4443
No 19
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.94 E-value=1.1e-25 Score=220.91 Aligned_cols=275 Identities=10% Similarity=0.066 Sum_probs=213.6
Q ss_pred hcCCeeeeeecceeEEEEEEeccccHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHh-hCChHHHHHHHHHHHhcC
Q 020661 20 NMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEV-EGQTEEVIFDHLHATAFQ 98 (323)
Q Consensus 20 ~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 98 (323)
..|..+++++ .+.+.+.+++.+++++.+|+++.+.+.+|.|++++|+++|+.++.++++. ..+|...+.+.+...+++
T Consensus 566 l~G~~~~~~~-~~g~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~l~~~~~~~p~~~a~~~l~~~l~~ 644 (939)
T 1q2l_A 566 VGGISFSTNA-NNGLMVNANGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQV 644 (939)
T ss_dssp HTTEEEEEEE-SSEEEEEEEEESSSHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHTTSS
T ss_pred HcCcEEEEee-CCcEEEEEEcccHhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhhcChHHHHHHHHHHHhcC
Confidence 3577888888 89999999999999999999999999999999999999999999999997 457898898888888887
Q ss_pred CCCCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHHHHhcCCCCCCCcccccccCCCccccC
Q 020661 99 YTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSADPTTASQLVANEPAIFTG 178 (323)
Q Consensus 99 ~~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (323)
+ + .+..++.+.|++++.++|++|++++|.+.++.++|+||++.+++.++++++++.++....+..... ......
T Consensus 645 ~--~-~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~~~vvGn~~~~~~~~l~~~~~~~l~~~~~~~~~~~---~~~~~~ 718 (939)
T 1q2l_A 645 P--Y-FSRDERRKILPSITLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGADGSEWCRNK---DVVVDK 718 (939)
T ss_dssp S--C-CCHHHHHHHGGGCCHHHHHHHHHHHHTTCEEEEEEEESCCHHHHHHHHHHHHHHHTCCCSCCCCCE---EECCCS
T ss_pred C--C-CCHHHHHHHHhcCCHHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHccCCccccccc---eEEeCC
Confidence 5 2 444578899999999999999999999999999999999999999999999987775332211100 011111
Q ss_pred C-c-eeeecCCCCceEE-EEEeecCCCCCcchHHHHHHHHHcCCCCCCCCCCCCcccHHHHHhcc-ccceehhcccccCC
Q 020661 179 S-E-VRIIDDDIPLAQF-AVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGI-NEIAESMMAFNTNY 254 (323)
Q Consensus 179 ~-~-~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~vl~~~l~~~~~~~~~~~~~~s~L~~~lre-~g~~y~~~~~~~~~ 254 (323)
+ . ......+..++.+ .+.++.+..+.++.+.+.++..++ +++||++||+ .|++|++++.....
T Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~-------------~s~lf~~LRek~gl~Y~v~s~~~~~ 785 (939)
T 1q2l_A 719 KQSVIFEKAGNSTDSALAAVFVPTGYDEYTSSAYSSLLGQIV-------------QPWFYNQLRTEEQLGYAVFAFPMSV 785 (939)
T ss_dssp CEEEEEEECCSSSCEEEEEEEECSSCCHHHHHHHHHHHHHHH-------------HHHHTHHHHTSCCSSSCEEEEEEEE
T ss_pred CceEEEecCCCCCCceeEEEEEecCCCCHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHhCceeeeeEeec
Confidence 2 1 1222333334444 566665433333444555555554 7999999995 99999999876533
Q ss_pred -CCccc-EEEEe-ecCcccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCCCCCCCCc
Q 020661 255 -KDTGL-FGVYA-VAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQVAASLPTYPGYLDI 314 (323)
Q Consensus 255 -~~~~~-~~i~~-~~~~~~~~~~~~~~~~~~~~l~~~is~~el~~ak~~~~~~~~~~~~~~~~ 314 (323)
...|. |.++. .++|+++.++++.+.+++.++.+++|++||+++|+.++.++....+++..
T Consensus 786 ~~~~g~~~~i~s~~~~p~~~~~~i~~~~~~~~~~~~~~t~~el~~~k~~l~~~~~~~~~s~~~ 848 (939)
T 1q2l_A 786 GRQWGMGFLLQSNDKQPSFLWERYKAFFPTAEAKLRAMKPDEFAQIQQAVITQMLQAPQTLGE 848 (939)
T ss_dssp TTEEEEEEEEEESSSCHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCSSHHH
T ss_pred CCeeEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCCHHH
Confidence 33342 55666 57899999999999999999766999999999999999999998886543
No 20
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=99.93 E-value=1.4e-25 Score=220.27 Aligned_cols=292 Identities=13% Similarity=0.062 Sum_probs=207.6
Q ss_pred ccccCCCCChHHHHHHHHhcCCeeeeeec----------------ceeEEEEEEeccccHHHHHHHHHHHhhCCCCChHH
Q 020661 2 IFKGTEKRTARDLEEEIENMGGHLNAYTS----------------REQTTYYAKVLDKDVNNALDILADILQNSTFDQAR 65 (323)
Q Consensus 2 ~f~Gt~~~~~~~~~~~l~~~g~~~~~~t~----------------~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~ 65 (323)
.-.||+++++.++.+.++.++|+++++++ .+++.++++++.++++.+++++.+++.+|+|++.+
T Consensus 767 ~~lGT~~~sy~el~~~i~~~tGGis~s~~~~~~~~~~~~~~~~~~~~~~~vs~kaL~~n~~~~~~Ll~eiL~~~~F~d~e 846 (1193)
T 3s5m_A 767 LENKTNKRSSEDFVILREKNIGSMSANVALYSKDDHLNVTDKYNAQALFNLEMHVLSHKCNDALNIALEAVKESDFSNKK 846 (1193)
T ss_dssp TTCCBSSSCHHHHHHHHHHHCSEEEEEEEEECCCBTTBCCCTTCCEEEEEEEEEEEGGGHHHHHHHHHHHHHSBCTTCHH
T ss_pred HhCCCCCCCHHHHHHHHHHhCCceEEEeeeecccccccccccccccceEEEEEEEhhhcHHHHHHHHHHHHhCCCCCcHH
Confidence 45699999999999999999999888763 34578999999999999999999999999999854
Q ss_pred -HHHHHHHHHHHHHHhhC-ChHHHHHHHHHHHhcCCCCCCCCCCCCccccccCC-------------HHHHHHHHHhhCC
Q 020661 66 -ITRERDVILREMEEVEG-QTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTIT-------------KEHLQNYIHTHYT 130 (323)
Q Consensus 66 -~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~-------------~~~l~~~~~~~~~ 130 (323)
+.+.+....+.+.+... +....+...+.+.+.+.+++.... +....+..++ .++|+++++++|+
T Consensus 847 Rlk~ll~~~ks~le~~i~~sGH~~A~~ra~s~~s~~~~~~e~~-~Gl~~~~fl~~l~~~~e~~~~~l~~~L~~i~~~if~ 925 (1193)
T 3s5m_A 847 KVIDILKRKINGMKTTFSEKGYAILMKYVKAHLNSKHYAHNII-YGYENYLKLQEQLELAENDFKTLENILVRIRNKIFN 925 (1193)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHTTTTTCHHHHHHHHH-HSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhccccccHHHHHHHHHHhcCcchhhhhhh-CChHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHcC
Confidence 55555555555555332 333344444444443333332221 1222332222 5789999999999
Q ss_pred CCceEEEEEcCCC-HHHHHHHHHHHhcCCCC----CCC----------cc--ccc----ccCCCccccCCceeeecCCCC
Q 020661 131 APRMVIAASGAVK-HEEVVEQVKKLFTKLSA----DPT----------TA--SQL----VANEPAIFTGSEVRIIDDDIP 189 (323)
Q Consensus 131 ~~~~~l~i~G~~~-~~~~~~~v~~~~~~~~~----~~~----------~~--~~~----~~~~~~~~~~~~~~~~~~~~~ 189 (323)
++|+.+.++|+.+ .+++.+.++++++.++. ... .. ... ...............+..+.+
T Consensus 926 ~~nl~vsvtg~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~p~~ 1005 (1193)
T 3s5m_A 926 KKNLMVSVTSDYGALKHLFVNSNESLKNLVSYFEENDKYINDMQNKVNDPTVMGWNEEIKSKKLFDEEKVKKEFFVLPTF 1005 (1193)
T ss_dssp STTEEEEEEECGGGTHHHHTTTHHHHHHHHHHHHHGGGGSCCCCSSSCCCCCCCHHHHHHHTTCCCTTCCEEEEEECCCS
T ss_pred CCCeEEEEEeChhhHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccccccccccceeEecCCc
Confidence 9999999999986 47777666666655431 000 00 000 000000011122333445678
Q ss_pred ceEEEEEeecCCCCCcchHHHHHHHHHcCCCCCCCCCCCCcccHHHHHhccccceehhcccccCCCCcccEEEEeecCcc
Q 020661 190 LAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPD 269 (323)
Q Consensus 190 ~~~v~~~~~~~~~~~~~~~~~~vl~~~l~~~~~~~~~~~~~~s~L~~~lre~g~~y~~~~~~~~~~~~~~~~i~~~~~~~ 269 (323)
++++..+++....++++++++.|++.+|| +++||++|||+|++|++++.+. ..|.|.++...+|
T Consensus 1006 v~yv~~~~~~~~~~~~d~~al~Vl~~iLg------------~~~L~~eIREkgGAYg~~s~~~---~~G~f~~~syrdp- 1069 (1193)
T 3s5m_A 1006 VNSVSMSGILFKPGEYLDPSFTVIVAALK------------NSYLWDTVRGLNGAYGVFADIE---YDGSVVFLSARDP- 1069 (1193)
T ss_dssp SBEEEEEEECSCTTCBCCTHHHHHHHHHH------------HTHHHHHHTTTTCCSEEEEEEC---TTSEEEEEEESBS-
T ss_pred ceEEEEEecCCCCCCCchHHHHHHHHHHC------------ccHHHHHHHhcCCeeEEEEecc---CCCcEEEEEEeCC-
Confidence 88999999998999999999999999998 5799999999888999999876 5678887777776
Q ss_pred cHHHHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHccCCCCCC
Q 020661 270 CLDDLAYAIMYETTKLAY---RVSEADVTRARNQVAASLPTYPGY 311 (323)
Q Consensus 270 ~~~~~~~~~~~~~~~l~~---~is~~el~~ak~~~~~~~~~~~~~ 311 (323)
++.++++.+.++++.+.+ ++|++||++||.++++++. +..+
T Consensus 1070 ~~~~tl~~~~~~~~~l~~~~~~~teeEL~~ak~~~~~~~d-~p~~ 1113 (1193)
T 3s5m_A 1070 NLEKTLATFRESAKGLRKMADTMTENDLLRYIINTIGTID-KPRR 1113 (1193)
T ss_dssp CSHHHHHHHHTHHHHHHHHHHHCCHHHHHHHHHHHHHHHS-CCCC
T ss_pred CHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhccc-ccCC
Confidence 467788888777777665 7999999999999999975 3444
No 21
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=99.92 E-value=1.7e-24 Score=213.61 Aligned_cols=278 Identities=10% Similarity=0.087 Sum_probs=218.0
Q ss_pred cCCeeeeeecceeEEEEEEeccccHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHhhC-ChHHHHHHHHHHHhcCC
Q 020661 21 MGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEVEG-QTEEVIFDHLHATAFQY 99 (323)
Q Consensus 21 ~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 99 (323)
.|++++++++.+.+.+++++.+++++.+|+++.+.+.+|.|+++.|+++++.++..+++... +|...+...+...+++
T Consensus 585 ~G~~~~~~~~~~~~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~~~~~~~~~p~~~a~~~~~~~l~~- 663 (990)
T 3cww_A 585 AGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEARFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTE- 663 (990)
T ss_dssp TTEEEEEEEETTEEEEEEEEESTTHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHBS-
T ss_pred CCeEEEEEEcCCeEEEEEEeccHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHhCC-
Confidence 37789999999999999999999999999999999999999999999999999999999776 8999999999998885
Q ss_pred CCCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHH---HHHHhcCCCCC-CCcccccccCCCcc
Q 020661 100 TPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQ---VKKLFTKLSAD-PTTASQLVANEPAI 175 (323)
Q Consensus 100 ~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~---v~~~~~~~~~~-~~~~~~~~~~~~~~ 175 (323)
+++. ..+..+.|++++.++|++|+++++.+.++.++++||++.+++.++ +.++++.+|.. +.+...........
T Consensus 664 ~~~~--~~~~~~~l~~lt~~~l~~~~~~~~~~~~~~~~v~Gn~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 741 (990)
T 3cww_A 664 VAWT--KDELKEALADVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTLIEHAHTKPLLPSQLAAYREVQ 741 (990)
T ss_dssp SCCC--HHHHHHHHTTCCHHHHHHHHHHHHHEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHCCEECCGGGCCCCCBBC
T ss_pred CCCC--HHHHHHHHhcCCHHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHhccCCCCCCchhhccccceEE
Confidence 4444 234778999999999999999999999999999999999998887 67777766532 11110000000001
Q ss_pred ccCCcee-e--ecCCCCceEEEEEeecCCCCCcchHHHHHHHHHcCCCCCCCCCCCCcccHHHHHhcc-ccceehhcccc
Q 020661 176 FTGSEVR-I--IDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGI-NEIAESMMAFN 251 (323)
Q Consensus 176 ~~~~~~~-~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~~l~~~~~~~~~~~~~~s~L~~~lre-~g~~y~~~~~~ 251 (323)
.+.+... . ..+...++.+.+.+..+.++.++.+++.|++++| +++||++||+ +|++|++++.+
T Consensus 742 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~ll~~il-------------~~~lf~~LRek~~lgY~v~s~~ 808 (990)
T 3cww_A 742 LPDRGWFVYQQRNEVHNNSGIEIYYQTDMQSTSENMFLELFAQII-------------SEPAFNTLRTKEQLGYIVFSGP 808 (990)
T ss_dssp CCTTEEEEEEEECSSCSSEEEEEEEEEEECCHHHHHHHHHHHHHH-------------HHHHHHHHTTTTCCCSEEEEEE
T ss_pred cCCCCeEEEEecCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHH-------------HHHHHHHHHhccCCcEEEEEEE
Confidence 1112221 2 2334455666666666567788999999999999 5899999996 89999999977
Q ss_pred cCCCCcccE--EEEeecCcccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCCCCCCCCc
Q 020661 252 TNYKDTGLF--GVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQVAASLPTYPGYLDI 314 (323)
Q Consensus 252 ~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~l~~~is~~el~~ak~~~~~~~~~~~~~~~~ 314 (323)
....+...+ .++..++|+++.++++.+.+++..+.+++|++||+++|..++.++....+++..
T Consensus 809 ~~~~g~~~~~~~vqs~~dp~~~~~~i~~f~~~~~~l~~~~te~el~~~k~~li~~~~~~~~~~~~ 873 (990)
T 3cww_A 809 RRANGIQGLRFIIQSEKPPHYLESRVEAFLITMEKSIEDMTEEAFQKHIQALAIRRLDKPKKLSA 873 (990)
T ss_dssp EEETTEEEEEEEEEESSCHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHCCCSSHHH
T ss_pred EeeCCEEEEEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCCCCCHHH
Confidence 654443333 335556788999999999999998876899999999999999999877776543
No 22
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=99.72 E-value=6.5e-18 Score=135.33 Aligned_cols=123 Identities=16% Similarity=0.145 Sum_probs=108.3
Q ss_pred eecCCCCceEEEEEeecCCCCCcchHHHHHHHHHcCCCCCCCCCCCCcccHHHHHhccccceehhcccccCCCCcccEEE
Q 020661 183 IIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGV 262 (323)
Q Consensus 183 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~~l~~~~~~~~~~~~~~s~L~~~lre~g~~y~~~~~~~~~~~~~~~~i 262 (323)
....+.+++++.++|+++++++++..++.|++.+|++ +++|||+++|||+|++|++++++..+.+.|.|.+
T Consensus 17 ~~~~~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLgg---------g~sSrL~~~lre~gl~y~~~~~~~~~~~~g~~~i 87 (197)
T 3ih6_A 17 TLRRAGGTPLVAAMYHLPAAGSPDFVGLDLAATILAD---------TPSSRLYHALVPTKLASGVFGFTMDQLDPGLAMF 87 (197)
T ss_dssp -----CCSCEEEEEEECCCTTSTTHHHHHHHHHHHHS---------STTSHHHHHHTTTTSCSEEEEEEETTSSSCEEEE
T ss_pred EEECCCCCceEEEEEecCCCCCCcHHHHHHHHHHHcC---------CCCchHHHHHHhcCceEEEEeccccccCCeEEEE
Confidence 3344568999999999999999999999999999984 4689999999988999999988777788999999
Q ss_pred EeecCcc-cHHHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHccCCCCCCCCc
Q 020661 263 YAVAKPD-CLDDLAYAIMYETTKLAY-RVSEADVTRARNQVAASLPTYPGYLDI 314 (323)
Q Consensus 263 ~~~~~~~-~~~~~~~~~~~~~~~l~~-~is~~el~~ak~~~~~~~~~~~~~~~~ 314 (323)
++.++++ +++++.+.+.++++++.+ +++++||+++|++++.++....+++..
T Consensus 88 ~~~~~~~~~~~~~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~~~~~~~ 141 (197)
T 3ih6_A 88 GAQLQPGMDQDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYADPEK 141 (197)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTSHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcCHHH
Confidence 9999998 699999999999999999 999999999999999999887777654
No 23
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=98.35 E-value=6e-06 Score=65.23 Aligned_cols=108 Identities=15% Similarity=0.099 Sum_probs=86.1
Q ss_pred eeEEEEEEeccc-cHHHHHHHHHHHhhCC---CCChHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCCCCCCC
Q 020661 32 EQTTYYAKVLDK-DVNNALDILADILQNS---TFDQARITRERDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTIL 107 (323)
Q Consensus 32 ~~~~~~~~~~~~-~l~~~l~ll~~~l~~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (323)
..+.+++.+.++ +++.++..+.+.+.+. .++++++++.|..+...+.....++...+.......+++ .+. ...
T Consensus 83 g~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~g-~~~--~~~ 159 (197)
T 3ih6_A 83 GLAMFGAQLQPGMDQDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYADPEKVGVALSEAIASG-DWR--LFF 159 (197)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHTT-CTT--HHH
T ss_pred eEEEEEEEECCCCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHcC-CHH--HHH
Confidence 345667777777 6999999888887653 599999999999999999988888888888777776664 221 112
Q ss_pred CCccccccCCHHHHHHHHHhhCCCCceEEEEEcCC
Q 020661 108 GPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAV 142 (323)
Q Consensus 108 g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~ 142 (323)
...+.|+++|.++++++.++++.+.+.+++++|+.
T Consensus 160 ~~~~~i~~vT~~dv~~~a~~~l~~~~~~~~~~~P~ 194 (197)
T 3ih6_A 160 LQRDRVREAKLDDVQRAAVAYLVRSNRTEGRYIPT 194 (197)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHSSGGGCEEEEECC-
T ss_pred HHHHHHHhCCHHHHHHHHHHhCCccCeEEEEEeCC
Confidence 24678899999999999999999999999999864
No 24
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=98.13 E-value=1.3e-05 Score=71.24 Aligned_cols=109 Identities=7% Similarity=0.049 Sum_probs=85.6
Q ss_pred eeEEEEEEeccccHHHHHHHHHHHhhC---CCCChHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCCCCCCCC
Q 020661 32 EQTTYYAKVLDKDVNNALDILADILQN---STFDQARITRERDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILG 108 (323)
Q Consensus 32 ~~~~~~~~~~~~~l~~~l~ll~~~l~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 108 (323)
..+.+++.+.+++++++++.+.+.+.+ -.++++++++.|..++..+.....++...+.......++.+.+.. ...
T Consensus 294 g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~--~~~ 371 (421)
T 3hdi_A 294 GMLTIYAGTGHDQLDDLVYSIQETTSALAEKGLTEKELENGKEQLKGSLMLSLESTNSRMSRNGKNELLLKKHRS--LDE 371 (421)
T ss_dssp EEEEEEEEEEGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCCC--HHH
T ss_pred ceEEEEEEeCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC--HHH
Confidence 345667777888899888888777654 469999999999999999988888888877776555555433221 122
Q ss_pred CccccccCCHHHHHHHHHhhCCCCceEEEEEcCCC
Q 020661 109 PAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVK 143 (323)
Q Consensus 109 ~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~ 143 (323)
..+.|+++|.++++++.++++ +.+++++++|+.+
T Consensus 372 ~~~~i~~vt~~dv~~~a~~~~-~~~~~~~vvgp~~ 405 (421)
T 3hdi_A 372 MIEQINAVQKQDVSRLAKILL-SASPSISLINANG 405 (421)
T ss_dssp HHHHHHHCCHHHHHHHHHHHT-TSCCEEEEEESSC
T ss_pred HHHHHHcCCHHHHHHHHHHHc-ccCcEEEEECchh
Confidence 457889999999999999999 9999999999864
No 25
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=98.11 E-value=2.2e-05 Score=69.83 Aligned_cols=127 Identities=9% Similarity=0.084 Sum_probs=91.5
Q ss_pred HHHHHHhcCCeeeeeec------ceeEEEEEEecc-ccHHHHHHHHHHHhhCC--CCChHHHHHHHHHHHHHHHH--hhC
Q 020661 14 LEEEIENMGGHLNAYTS------REQTTYYAKVLD-KDVNNALDILADILQNS--TFDQARITRERDVILREMEE--VEG 82 (323)
Q Consensus 14 ~~~~l~~~g~~~~~~t~------~~~~~~~~~~~~-~~l~~~l~ll~~~l~~p--~~~~~~~~~~~~~~~~~~~~--~~~ 82 (323)
+.+.+...|..++++.. ...+.+.+.+.+ ++++.+++.+.+.+..- .++++++++.|..+...+.. ...
T Consensus 276 L~~~lRe~gl~y~v~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~~~t~~el~~ak~~~~~~~~~~~~~~ 355 (431)
T 3cx5_A 276 LLDNIQEYQLCDNFNHFSLSYKDSGLWGFSTATRNVTMIDDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYESG 355 (431)
T ss_dssp HHHHHHTTTCCSEEEEEEEECSSCEEEEEEEEESCTTCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHhcCceeeEeEeecccCCCceEEEEEeeCchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccC
Confidence 44445545655554433 234556777777 78888777776655332 59999999999999999988 778
Q ss_pred ChHHHHHHHHHHHh-cCCCCCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEcCCC
Q 020661 83 QTEEVIFDHLHATA-FQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVK 143 (323)
Q Consensus 83 ~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~ 143 (323)
++...+.......+ ++. +.. .....+.|+++|.+++++++++++.+.+.+++++|+.+
T Consensus 356 ~~~~~~~~~~~~~~~~g~-~~~--~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~v~g~~~ 414 (431)
T 3cx5_A 356 NPVNDANLLGAEVLIKGS-KLS--LGEAFKKIDAITVKDVKAWAGKRLWDQDIAIAGTGQIE 414 (431)
T ss_dssp CHHHHHHHHHHHHHHHSS-CCC--HHHHHHHHHHCCHHHHHHHHHHHTTTCCCEEEEEESCT
T ss_pred CHHHHHHHHHHHHHhcCC-CCC--HHHHHHHHhcCCHHHHHHHHHHHcccCCcEEEEEcchh
Confidence 88887776666544 442 221 22235778999999999999999999999999999864
No 26
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=98.09 E-value=1.1e-05 Score=71.29 Aligned_cols=126 Identities=8% Similarity=0.037 Sum_probs=94.3
Q ss_pred HHHHHhcCCeeeeeecc------eeEEEEEEeccccHHHHHHHHHHHhhCC---CCChHHHHHHHHHHHHHHHHhhCChH
Q 020661 15 EEEIENMGGHLNAYTSR------EQTTYYAKVLDKDVNNALDILADILQNS---TFDQARITRERDVILREMEEVEGQTE 85 (323)
Q Consensus 15 ~~~l~~~g~~~~~~t~~------~~~~~~~~~~~~~l~~~l~ll~~~l~~p---~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (323)
.+.+...|..+++++.. ..+.+++.+.+++++++++.+.+.+... .++++++++.|..+...+.....++.
T Consensus 271 ~~~lre~gl~y~~~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~ 350 (406)
T 3eoq_A 271 HFALVDKGLAEVASFGLEEADRAGTFHAYVQADPARKGEVLAVLQEELDRLGREGVGEEEVERAKTPLATGLVFAGETPM 350 (406)
T ss_dssp HHHTTTTTSEEEEEEEEEECSSCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHcCCeeEEEEEecccCCceEEEEEEEeCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCHH
Confidence 33333355544444322 3456777788889999999888877653 59999999999999999988888888
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEcCCC
Q 020661 86 EVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVK 143 (323)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~ 143 (323)
..+.......++.+.+.. .....+.|+++|.++++++.++++.+.++ ++++|+..
T Consensus 351 ~~~~~~~~~~~~~~~~~~--~~~~~~~i~~vt~~dv~~~a~~~l~~~~~-~~vvGp~~ 405 (406)
T 3eoq_A 351 QRLFHLGMEYLYTGRYLS--LEEVKARVQRVTSREVNALLERGFLEKGL-YYLVLPHG 405 (406)
T ss_dssp HHHHHHHHHHHHHSSCCC--HHHHHHHHHHCCHHHHHHHHHTTTTTSCE-EEEEECCC
T ss_pred HHHHHHHHHHHhcCCCCC--HHHHHHHHHhCCHHHHHHHHHHhcCcccE-EEEECCCC
Confidence 888777766665443322 12245788999999999999999999999 99999753
No 27
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=98.03 E-value=4.9e-05 Score=68.03 Aligned_cols=128 Identities=8% Similarity=-0.023 Sum_probs=91.0
Q ss_pred HHHHHHhcCCeeeeeec------ceeEEEEEEeccccHHHHHHHHHHHhhCC--CCChHHHHHHHHHHHHHHHHhhCChH
Q 020661 14 LEEEIENMGGHLNAYTS------REQTTYYAKVLDKDVNNALDILADILQNS--TFDQARITRERDVILREMEEVEGQTE 85 (323)
Q Consensus 14 ~~~~l~~~g~~~~~~t~------~~~~~~~~~~~~~~l~~~l~ll~~~l~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (323)
+.+.+...|..++++.. ...+.+++.+.+++++++++.+.+.+... .++++++++.|..+...+.....++.
T Consensus 294 L~~~lr~~glay~~~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~t~~el~~ak~~~~~~~~~~~~~~~ 373 (446)
T 1pp9_A 294 LASIAATNKLCQSFQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVLRGKNLLRNALVSHLDGTT 373 (446)
T ss_dssp HHHHHHHHTCCSEEEEEEEECSSCEEEEEEEEECTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCSHH
T ss_pred HHHHHHhcCCeEEEEEecccCCCCeEEEEEEEECHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCCHH
Confidence 44445555544444332 23356667777788888888877765331 29999999999999999988777887
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEcCCC
Q 020661 86 EVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVK 143 (323)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~ 143 (323)
..+.......++.+.+.. .....+.|.++|.++++++.++++.+++.+++++|+.+
T Consensus 374 ~~~~~~~~~~~~~g~~~~--~~~~~~~i~~vt~edv~~~a~~~~~~~~~~~~~~g~~~ 429 (446)
T 1pp9_A 374 PVCEDIGRSLLTYGRRIP--LAEWESRIAEVDARVVREVCSKYFYDQCPAVAGFGPIE 429 (446)
T ss_dssp HHHHHHHHHHHHTSSCCC--HHHHHHHHHTCCHHHHHHHHHHHTTTCCCEEEEEESCT
T ss_pred HHHHHHHHHHHHcCCCCC--HHHHHHHHHcCCHHHHHHHHHHHcCCCCcEEEEECCcc
Confidence 777665555433333322 12235778999999999999999999999999999864
No 28
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=98.00 E-value=9.5e-05 Score=66.73 Aligned_cols=128 Identities=9% Similarity=0.081 Sum_probs=93.0
Q ss_pred HHHHHH-HhcCCeeeeeec------ceeEEEEEEeccccHHHHHHHHHHHhhCC------CCChHHHHHHHHHHHHHHHH
Q 020661 13 DLEEEI-ENMGGHLNAYTS------REQTTYYAKVLDKDVNNALDILADILQNS------TFDQARITRERDVILREMEE 79 (323)
Q Consensus 13 ~~~~~l-~~~g~~~~~~t~------~~~~~~~~~~~~~~l~~~l~ll~~~l~~p------~~~~~~~~~~~~~~~~~~~~ 79 (323)
-+.+.+ ++.|..++++.. ...+.+.+.+.+++++.+++.+...+... .++++++++.|..++..+..
T Consensus 288 ~L~~~lr~~~gl~y~v~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~t~~El~~ak~~l~~~~~~ 367 (475)
T 1hr6_A 288 RLYTHVLNQYYFVENCVAFNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLM 367 (475)
T ss_dssp HHHHHTTTTCSSEEEEEEEEEECSSCEEEEEEEEECGGGHHHHHHHHHHHHHTTTTCTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCeeEEEEeccccCCCceEEEEEEeCHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 344444 345655444332 23456777888889999998888777652 39999999999999999988
Q ss_pred hhCChHHHHHHHHHHHhcCCCCCCCCCCCCccccccCCHHHHHHHHHhhCCC---------CceEEEEEcCC
Q 020661 80 VEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTA---------PRMVIAASGAV 142 (323)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~---------~~~~l~i~G~~ 142 (323)
...++...+.......+..+.+.. .....+.|+++|.++++++.++++.+ .+.+++++|+.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~~~~~~~~~~v~g~~ 437 (475)
T 1hr6_A 368 NLESKLVELEDMGRQVLMHGRKIP--VNEMISKIEDLKPDDISRVAEMIFTGNVNNAGNGKGRATVVMQGDR 437 (475)
T ss_dssp HTTSHHHHHHHHHHHHHHHSCCCC--HHHHHHHHHTCCHHHHHHHHHHHHTTCCCCTTCCCCCCEEEEESCG
T ss_pred hCCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHcCCHHHHHHHHHHHhhhccccccccCCCcEEEEECCc
Confidence 777888777666664433233321 22245778999999999999999988 58999999986
No 29
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=98.00 E-value=4.8e-05 Score=67.51 Aligned_cols=128 Identities=13% Similarity=0.176 Sum_probs=92.4
Q ss_pred HHHHHH-hcCCeeeeeecc------eeEEEEEEeccccHHHHHHHHHHHhhC---CCCChHHHHHHHHHHHHHHHHhhCC
Q 020661 14 LEEEIE-NMGGHLNAYTSR------EQTTYYAKVLDKDVNNALDILADILQN---STFDQARITRERDVILREMEEVEGQ 83 (323)
Q Consensus 14 ~~~~l~-~~g~~~~~~t~~------~~~~~~~~~~~~~l~~~l~ll~~~l~~---p~~~~~~~~~~~~~~~~~~~~~~~~ 83 (323)
+.+.+. +.|..+++++.. ..+.+.+.+.+++.+.+++.+.+.+.. -.++++++++.|..++..+.....+
T Consensus 278 L~~~lR~~~gl~y~v~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~ 357 (424)
T 3amj_B 278 LMKEIRDKRGLSYGAYSYFSPQKSMGLFQIGFETRAEKADEAVQVANDTLDAFLREGPTDAELQAAKDNLINGFALRLDS 357 (424)
T ss_dssp HHHHHTTTTCCEEEEEEEECCBSSCEEEEEEEEEESTTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSGGGGSS
T ss_pred hHHHHHHhCCeEEEeeeeeccCCCceeEEEEEEeCcccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhHhcCC
Confidence 444454 356555554322 345667777788888888887777653 3589999999999999988877778
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEcCCC
Q 020661 84 TEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVK 143 (323)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~ 143 (323)
+...+........++. +... .....+.|+++|.++++++.++++.|++++++++|+..
T Consensus 358 ~~~~~~~~~~~~~~~~-~~~~-~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~~~~~~~ 415 (424)
T 3amj_B 358 NAKILGQVAVIGYYGL-PLDY-LDHYTERVQAVTVEQVREAFARHVKRENLITVVVGGKA 415 (424)
T ss_dssp HHHHHHHHHHHHHTTC-CTTT-TTSHHHHHHTCCHHHHHHHHHHHCCGGGCEEEEEECC-
T ss_pred HHHHHHHHHHHHHcCC-ChhH-HHHHHHHHHcCCHHHHHHHHHHhcCccceEEEEECChh
Confidence 8877776665544432 2221 12245789999999999999999999999999999864
No 30
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=97.96 E-value=9.9e-05 Score=65.87 Aligned_cols=128 Identities=10% Similarity=0.049 Sum_probs=90.9
Q ss_pred HHHHHHH-hcCCeeeeeec------ceeEEEEEEec--cccHHHHHHHHHHHh---hCCCCChHHHHHHHHHHHHHHHHh
Q 020661 13 DLEEEIE-NMGGHLNAYTS------REQTTYYAKVL--DKDVNNALDILADIL---QNSTFDQARITRERDVILREMEEV 80 (323)
Q Consensus 13 ~~~~~l~-~~g~~~~~~t~------~~~~~~~~~~~--~~~l~~~l~ll~~~l---~~p~~~~~~~~~~~~~~~~~~~~~ 80 (323)
-+.+.+. ..|..++++.. ...+.+++.+. +++++.+++.+.+.+ .+-.++++++++.|..++..+...
T Consensus 289 ~L~~~lre~~glay~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~ 368 (443)
T 1hr6_B 289 PLAVAASQNGSLANSYMSFSTSYADSGLWGMYIVTDSNEHNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLS 368 (443)
T ss_dssp HHHHHHHSTTCSCSEEEEEEEECSSCEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCeEEEEeeecCCCCceEEEEEEEecCChhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHc
Confidence 3455554 55654443322 23456667777 788888888887766 344599999999999999999887
Q ss_pred hCChHHHHHHHHHHHhcCCCCCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEcCC
Q 020661 81 EGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAV 142 (323)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~ 142 (323)
..++...+.......+..+.+.. .....+.|.++|.++++++.++++.+.+.+++++|+.
T Consensus 369 ~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~v~g~~ 428 (443)
T 1hr6_B 369 LDGSTAIVEDIGRQVVTTGKRLS--PEEVFEQVDKITKDDIIMWANYRLQNKPVSMVALGNT 428 (443)
T ss_dssp CCSHHHHHHHHHHHHHHHSSCCC--HHHHHHHHHTCCHHHHHHHHHHHSSSCCEEEEEEECG
T ss_pred cCCHHHHHHHHHHHHHhcCCcCC--HHHHHHHHHhCCHHHHHHHHHHHhccCCcEEEEECCc
Confidence 77777766655554432222222 1223577899999999999999999999999999974
No 31
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=97.91 E-value=0.00012 Score=65.09 Aligned_cols=127 Identities=9% Similarity=0.070 Sum_probs=92.1
Q ss_pred HHHHHHH-hcCCeeeeeec------ceeEEEEEEeccccHHHHHHHHHHHhhC---CCCChHHHHHHHHHHHHHHHHhhC
Q 020661 13 DLEEEIE-NMGGHLNAYTS------REQTTYYAKVLDKDVNNALDILADILQN---STFDQARITRERDVILREMEEVEG 82 (323)
Q Consensus 13 ~~~~~l~-~~g~~~~~~t~------~~~~~~~~~~~~~~l~~~l~ll~~~l~~---p~~~~~~~~~~~~~~~~~~~~~~~ 82 (323)
-+.+.+. +.|..+++++. ...+.+.+.+.+++++.+++.+.+.+.. -.++++++++.|..++..+.....
T Consensus 294 ~L~~~lRe~~gl~Y~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~ 373 (439)
T 1pp9_B 294 SLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVE 373 (439)
T ss_dssp HHHHHHHHHCCSCEEEEEEEEEETTEEEEEEEEEEEGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhcCCceEEEEeeccccccceEEEEEEeCHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 3555554 55655444432 2334566777788888888887776654 459999999999999999988778
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEcCC
Q 020661 83 QTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAV 142 (323)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~ 142 (323)
++...+.......++++.+.. .....+.|+++|.+++++++++++. .+.+++++|+.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~vt~~dv~~~a~~~~~-~~~~~~v~g~~ 430 (439)
T 1pp9_B 374 SSEGFLDEVGSQALAAGSYTP--PSTVLQQIDAVADADVINAAKKFVS-GRKSMAASGNL 430 (439)
T ss_dssp SHHHHHHHHHHHHHHHSSCCC--HHHHHHHHHTCCHHHHHHHHHHHHH-SCEEEEEEECG
T ss_pred CHHHHHHHHHHHHHhcCCCCC--HHHHHHHHhcCCHHHHHHHHHHHhc-CCceEEEECCc
Confidence 888877766666555333221 2224577899999999999999988 89999999974
No 32
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=97.89 E-value=2.5e-05 Score=69.53 Aligned_cols=110 Identities=10% Similarity=0.157 Sum_probs=83.9
Q ss_pred eeEEEEEEeccccHHHHHHHHHHHhhC---CCCChHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCCCCCCCC
Q 020661 32 EQTTYYAKVLDKDVNNALDILADILQN---STFDQARITRERDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILG 108 (323)
Q Consensus 32 ~~~~~~~~~~~~~l~~~l~ll~~~l~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 108 (323)
..+.+++.+.+++.+.+++.+.+.+.+ -.++++++++.|..++..+.....++...+........++.. .. ....
T Consensus 310 g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~ 387 (434)
T 3gwb_A 310 GPFMINLQTRAEMSEGTLKLVQDVFAEYLKNGPTQKELDDAKRELAGSFPLSTASNADIVGQLGAMGFYNLP-LS-YLED 387 (434)
T ss_dssp CEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHTTCC-TT-HHHH
T ss_pred eeEEEEEecchhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHcCCC-cc-HHHH
Confidence 345677788888888888888877765 358999999999999999988778888888777666555422 11 1112
Q ss_pred CccccccCCHHHHHHHHHhhCCCCceEEEEEcCCC
Q 020661 109 PAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVK 143 (323)
Q Consensus 109 ~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~ 143 (323)
..+.|+++|.+++++++++++.+.+++++++|+..
T Consensus 388 ~~~~i~~vt~~dv~~~a~~~l~~~~~~~~vvg~~~ 422 (434)
T 3gwb_A 388 FMRQSQELTVEQVKAAMNKHLNVDKMVIVSAGPTV 422 (434)
T ss_dssp HHHHHHHCCHHHHHHHHHHHCCGGGCEEEEEECCC
T ss_pred HHHHHHhCCHHHHHHHHHHhcChhhEEEEEEcCcc
Confidence 35788999999999999999999999999999754
No 33
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=97.61 E-value=0.00019 Score=64.20 Aligned_cols=109 Identities=6% Similarity=-0.055 Sum_probs=82.5
Q ss_pred eEEEEEEeccc-cHHHHHHHHHHHhhC---CCCChHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCCCCCCCC
Q 020661 33 QTTYYAKVLDK-DVNNALDILADILQN---STFDQARITRERDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILG 108 (323)
Q Consensus 33 ~~~~~~~~~~~-~l~~~l~ll~~~l~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 108 (323)
.+.+++.+.++ +++.+++.+.+.+.. -.++++++++.|..++..+.....++...+.......+++..+. ....
T Consensus 311 ~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~g~t~~el~~ak~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~ 388 (445)
T 3ami_A 311 LFILEGVPSKGVTIAQLETDLRAQVRDIAAKGVTEAELSRVKSQMVAGKVYEQDSLMGQATQIGGLEVLGLSWR--DDDR 388 (445)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHTTTCCTT--HHHH
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHcCCChH--HHHH
Confidence 34455666666 488888887776655 34899999999999999998877888877776666665543221 1112
Q ss_pred CccccccCCHHHHHHHHHhhCCCCceEEEEEcCCC
Q 020661 109 PAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVK 143 (323)
Q Consensus 109 ~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~ 143 (323)
..+.|++++.+++.++.++++.+.+++++++|+..
T Consensus 389 ~~~~i~~vt~~dv~~~a~~~l~~~~~~~~~~~p~~ 423 (445)
T 3ami_A 389 FYQQLRSVTAAEVKAAAARLLTDDTLTVANLVPLP 423 (445)
T ss_dssp HHHHHHTCCHHHHHHHHHTTSCSTTEEEEEEEEEC
T ss_pred HHHHHHcCCHHHHHHHHHHHcCcCCeEEEEEccCc
Confidence 35778999999999999999999999999999643
No 34
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=97.20 E-value=0.0021 Score=56.77 Aligned_cols=124 Identities=15% Similarity=0.088 Sum_probs=86.3
Q ss_pred HHHHHH-hcCCeeeeeec----ceeEEEEEEeccccHHHHHHHHHHHhhC---CCCChHHHHHHHHHHHHHHHHhhCChH
Q 020661 14 LEEEIE-NMGGHLNAYTS----REQTTYYAKVLDKDVNNALDILADILQN---STFDQARITRERDVILREMEEVEGQTE 85 (323)
Q Consensus 14 ~~~~l~-~~g~~~~~~t~----~~~~~~~~~~~~~~l~~~l~ll~~~l~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (323)
+.+.+. +.|..+++++. ...+.+++.+.+++++.+++.+.+.+.. -.++++++++.|..++..+.....++.
T Consensus 290 L~~~lRe~~glaY~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~ 369 (425)
T 3d3y_A 290 LFMNVREKEHLAYYASSSIDTFRGFMTVQTGIDGKNRNQVLRLISTELENIRLGKIRELEIEQTKAMLKNQYILALDNAG 369 (425)
T ss_dssp HHHHTTTTSCCCSEEEEEEETTTTEEEEEEEECGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHhcCeEEEEeccccccCceEEEEEecCHhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHhcccCHH
Confidence 344443 34655555442 2345677777888888888887776654 459999999999999999988888888
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEcC
Q 020661 86 EVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGA 141 (323)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~ 141 (323)
..+.......++.+.+. ......+.|+++|.++++++.++++ +++. ++++|+
T Consensus 370 ~~~~~~~~~~~~~g~~~--~~~~~~~~i~~vt~edv~~~a~~~~-~~~~-~~v~g~ 421 (425)
T 3d3y_A 370 AWLEKEYLNELMPQTML--TAEEWIARINAVTIPEIQEVAKRLE-LQAI-FFLEGE 421 (425)
T ss_dssp HHHHHHHHHHHSTTSCC--CHHHHHHHHHHCCHHHHHHHHHHCE-EEEE-EEEEEE
T ss_pred HHHHHHHHHHhhcCCCC--CHHHHHHHHHhCCHHHHHHHHHhcc-CceE-EEEeCC
Confidence 88877776666633222 1222457789999999999999975 5444 455554
No 35
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=96.93 E-value=0.0061 Score=55.16 Aligned_cols=109 Identities=9% Similarity=0.042 Sum_probs=73.5
Q ss_pred ceeEEEEEEeccccHHHHHHHHHHHhhC---CCCChHHHHHHHHHHHHHHHHh-----hCChHHHHHHHHHHHhcCCCCC
Q 020661 31 REQTTYYAKVLDKDVNNALDILADILQN---STFDQARITRERDVILREMEEV-----EGQTEEVIFDHLHATAFQYTPL 102 (323)
Q Consensus 31 ~~~~~~~~~~~~~~l~~~l~ll~~~l~~---p~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 102 (323)
.+...|.+.+.++++++++..+.+.+.+ --++++++++.|..++..+... ..++...+...+....... .+
T Consensus 327 ~~~~~~~i~~~~~~~~~a~~~i~~el~~l~~~g~te~EL~~aK~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~ 405 (492)
T 3go9_A 327 RAQCAIHLNTPVENLTANMTFVARELAALRANGLSQAEFDALMTQKNDQLSKLFATYARTDTDILMSQRLRSQQSGV-VD 405 (492)
T ss_dssp EEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHHHHHHHHHHHTC-CC
T ss_pred hcceEEEEEcCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCC-Cc
Confidence 3455678888889999999988887765 3599999999999998887653 2334445555444433321 11
Q ss_pred CCCC--CCC-ccccccCCHHHHHHHHHhhCCCCceEEEEEcC
Q 020661 103 GRTI--LGP-AQNIKTITKEHLQNYIHTHYTAPRMVIAASGA 141 (323)
Q Consensus 103 ~~~~--~g~-~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~ 141 (323)
..+. ... .+.|.++|.++++++.++++.+.+. ++++|+
T Consensus 406 ~~~~~~~~~~~~~i~~vT~edV~~~a~~~l~~~~~-~vvvg~ 446 (492)
T 3go9_A 406 IAPEQYQKLRQAFLSGLTLAELNRELKQQLSQDTT-LVLMQP 446 (492)
T ss_dssp BCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCE-EEEEEE
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhCCCCe-EEEEcC
Confidence 1110 001 1448899999999999999997654 555554
No 36
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=91.13 E-value=0.44 Score=40.51 Aligned_cols=119 Identities=10% Similarity=-0.062 Sum_probs=72.0
Q ss_pred ecCCCCceEEEEEeecCCCCCcchHHHHHHHHHcCCCCCCCCCCCCcccHHHHHhccccceehhcccccCCCCcccEEEE
Q 020661 184 IDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVY 263 (323)
Q Consensus 184 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~~l~~~~~~~~~~~~~~s~L~~~lre~g~~y~~~~~~~~~~~~~~~~i~ 263 (323)
...+.+.+.+.+.++............+++..++..|. +..-...+.+.+...|+.+.++... -.+.++
T Consensus 6 ~~~~~~~v~~~~~~~~Gs~~e~~~G~ah~leh~lf~Gt-----~~~~~~~l~~~l~~~G~~~na~t~~------~~t~~~ 74 (352)
T 3cx5_B 6 RDAPTKISTLAVKVHGGSRYATKDGVAHLLNRFNFQNT-----NTRSALKLVRESELLGGTFKSTLDR------EYITLK 74 (352)
T ss_dssp ECCSCSEEEEEEEESCSGGGCSSTTHHHHHHHHTTSCB-----SSSCHHHHHHHHHHHTCEEEEEECS------SCEEEE
T ss_pred eeCCCceEEEEEEEeeeccCCCcccHHHHHHHHhccCc-----CCCCHHHHHHHHHHhCCeEEEEEcc------ceEEEE
Confidence 34445666666666654444445556688888885321 1111223555555456554443322 244456
Q ss_pred eecCcccHHHHHHHHHHHHHHhccCCCHHHHH-HHHHHHHHccCCCCCCCCcc
Q 020661 264 AVAKPDCLDDLAYAIMYETTKLAYRVSEADVT-RARNQVAASLPTYPGYLDIC 315 (323)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~l~~~is~~el~-~ak~~~~~~~~~~~~~~~~~ 315 (323)
+.+.++++..+++.+.+.+..- .+++++++ +.|..+...+....+++...
T Consensus 75 ~~~~~~~l~~~l~ll~d~~~~p--~f~~~~~~~~~k~~v~~e~~~~~~~p~~~ 125 (352)
T 3cx5_B 75 ATFLKDDLPYYVNALADVLYKT--AFKPHELTESVLPAARYDYAVAEQCPVKS 125 (352)
T ss_dssp EEEEGGGHHHHHHHHHHHHHHB--CCCHHHHHHTHHHHHHHHHHHHHTCHHHH
T ss_pred EEechhhHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 6666678888888888777554 69999998 88888887776555555443
No 37
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=59.75 E-value=18 Score=24.82 Aligned_cols=63 Identities=13% Similarity=0.184 Sum_probs=42.2
Q ss_pred ccccCC-CCChHHHHHHHHhcCCeeeeeecceeEEEEEEecc--ccHHHHHHHHHHHhhCCCCChHHHHHH
Q 020661 2 IFKGTE-KRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLD--KDVNNALDILADILQNSTFDQARITRE 69 (323)
Q Consensus 2 ~f~Gt~-~~~~~~~~~~l~~~g~~~~~~t~~~~~~~~~~~~~--~~l~~~l~ll~~~l~~p~~~~~~~~~~ 69 (323)
+|-|+- .+++.++.+.++.+|+.+..+++...+.+-+--.+ .++..+-++ .=|.+++++|-..
T Consensus 39 v~TG~l~~~~R~e~~~~i~~~Gg~v~~sVSkkTd~LV~G~~~g~sK~~kA~~l-----gI~Ii~E~~f~~l 104 (109)
T 2k6g_A 39 VITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAAL-----GTKIIDEDGLLNL 104 (109)
T ss_dssp EEESBCSSCCHHHHHHHHHHTTCEEESSCCTTCCEEEECBCCCHHHHHHHHHH-----TCEEECHHHHHHH
T ss_pred EEeeeCCCCCHHHHHHHHHHcCCEeeCcccCCceEEEECCCCChHHHHHHHHc-----CCeEEeHHHHHHH
Confidence 455775 56899999999999999988888755444332222 456665543 4466787766543
No 38
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.04 E-value=25 Score=24.19 Aligned_cols=62 Identities=13% Similarity=0.204 Sum_probs=40.1
Q ss_pred ccccCC-CCChHHHHHHHHhcCCeeeeeecceeEEEEEEec--cccHHHHHHHHHHHhhCCCCChHHHHH
Q 020661 2 IFKGTE-KRTARDLEEEIENMGGHLNAYTSREQTTYYAKVL--DKDVNNALDILADILQNSTFDQARITR 68 (323)
Q Consensus 2 ~f~Gt~-~~~~~~~~~~l~~~g~~~~~~t~~~~~~~~~~~~--~~~l~~~l~ll~~~l~~p~~~~~~~~~ 68 (323)
+|-|+- .+++.++.+.++.+|+.+..+++.....+-+--. +.++..+-++ .=|.+++++|..
T Consensus 29 v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkkTd~LV~G~~~g~sKl~KA~~l-----gI~IisE~~f~~ 93 (112)
T 2ebu_A 29 VITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAAL-----GTKIIDEDGLLN 93 (112)
T ss_dssp EECSCCSSSCHHHHHHHHHHTTCEECSSCCSSCCEEEECSSCCSHHHHHHHHH-----TCEEEEHHHHHH
T ss_pred EEeeeCCCCCHHHHHHHHHHcCCEEeccccCCeeEEEecCCCChHHHHHHHHc-----CCeEEeHHHHHH
Confidence 456775 4689999999999999998888875544443221 1345555443 345566655543
No 39
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=48.85 E-value=34 Score=21.37 Aligned_cols=47 Identities=11% Similarity=0.021 Sum_probs=36.4
Q ss_pred HHHHHHHHhcCCeeeeeecceeEEEEEEeccccHHHHHHHHHHHhhC
Q 020661 12 RDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQN 58 (323)
Q Consensus 12 ~~~~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~ 58 (323)
..+..+|+..|+.+--....+...+.+.++.++.+.+...|.++...
T Consensus 20 g~v~~~L~~~~~~I~~~~Y~~~V~l~v~vp~~~~~~~~~~L~d~t~G 66 (76)
T 3lh2_S 20 TGILWLLGQVDGKIINSDVQAFVLLRVALPAAKVAEFSAKLADFSGG 66 (76)
T ss_dssp HHHHHHHHHTTCEEEEEEEEEEEEEEEEECC-CC-CHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCEEEcccccCeEEEEEEECHHHHHHHHHHHHHHhCC
Confidence 44677888889887666667779999999999999999988887653
No 40
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=48.42 E-value=30 Score=18.43 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=18.2
Q ss_pred HHHHHHHHHhcc-CCCHHHHHHHHHH
Q 020661 276 YAIMYETTKLAY-RVSEADVTRARNQ 300 (323)
Q Consensus 276 ~~~~~~~~~l~~-~is~~el~~ak~~ 300 (323)
.++..++..+.. +|+.+|+......
T Consensus 3 aalkselqalkkegfspeelaalese 28 (48)
T 1g6u_A 3 AALKSELQALKKEGFSPEELAALESE 28 (48)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 456677778877 9999998765443
No 41
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=47.60 E-value=19 Score=24.86 Aligned_cols=62 Identities=15% Similarity=0.279 Sum_probs=42.0
Q ss_pred ccccCCCCChHHHHHHHHhcCCeeeeeecceeEEEEEEe----ccccHHHHHHHHHHHhhCCCCChHHHHH
Q 020661 2 IFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKV----LDKDVNNALDILADILQNSTFDQARITR 68 (323)
Q Consensus 2 ~f~Gt~~~~~~~~~~~l~~~g~~~~~~t~~~~~~~~~~~----~~~~l~~~l~ll~~~l~~p~~~~~~~~~ 68 (323)
+|-|+-..++.++.+.++.+|+.+..+++...+.+-+.- ...++..+-+ +.=|.++++.++.
T Consensus 17 ViTG~l~~~R~e~k~~ie~~Ggkv~~sVskkT~~lV~g~~~e~~gsKl~kA~~-----lgI~IvsE~~l~~ 82 (113)
T 2cok_A 17 LTLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTKKEVEKMNKKMEEVKE-----ANIRVVSEDFLQD 82 (113)
T ss_dssp EECSCCSSCHHHHHHHHHHTTCEEESCSTTCSEEECCHHHHHHCCHHHHHHHH-----TTCCEECTHHHHH
T ss_pred EEEecCCCCHHHHHHHHHHCCCEEcCccccCccEEEECCCCCCCChHHHHHHH-----CCCcEEeHHHHHH
Confidence 456776668999999999999999999987665443321 2234555543 3456777765543
No 42
>3ov5_A VIRB7 (XAC2622), uncharacterized protein; type IV secretion system component, bacteri membrane, xanthomonas axonopodis PV citri; 1.04A {Xanthomonas axonopodis PV}
Probab=39.89 E-value=44 Score=21.22 Aligned_cols=43 Identities=21% Similarity=0.363 Sum_probs=36.3
Q ss_pred CCCCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEcC
Q 020661 99 YTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGA 141 (323)
Q Consensus 99 ~~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~ 141 (323)
++++-....+....|+..+.++...=..+.|....+++.|.|+
T Consensus 33 ~~~sDyTLy~~Vs~I~tt~~~~A~~eLs~~Y~aqgv~vsv~~n 75 (85)
T 3ov5_A 33 NLPSDYTLIGPVSAISTTSVQQAATELSAVYAAQGVSVSVSAN 75 (85)
T ss_dssp CSSSCCBCCGGGGGCEESCHHHHHHHHHHHHGGGTEEEEEETT
T ss_pred cCccceeeehhhhhhhhhhHHHHHHHHHHHHHhCCeEEEEECC
Confidence 4555667778889999999998888888888889999999997
No 43
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=39.25 E-value=34 Score=28.23 Aligned_cols=40 Identities=18% Similarity=0.296 Sum_probs=31.2
Q ss_pred cccccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHH
Q 020661 111 QNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVK 152 (323)
Q Consensus 111 ~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~ 152 (323)
=.+++.+++++++..+.. ..++.+.++|+++.+.+.++++
T Consensus 233 I~LDn~~~~~l~~av~~i--~~~v~ieaSGGI~~~~i~~~a~ 272 (298)
T 3gnn_A 233 VLLDNFTLDMMRDAVRVT--EGRAVLEVSGGVNFDTVRAIAE 272 (298)
T ss_dssp EEEESCCHHHHHHHHHHH--TTSEEEEEESSCSTTTHHHHHH
T ss_pred EEECCCCHHHHHHHHHHh--CCCCeEEEEcCCCHHHHHHHHH
Confidence 446778888888888766 3578888999999888877765
No 44
>2ld7_A Histone deacetylase complex subunit SAP30; transcription; NMR {Mus musculus}
Probab=34.25 E-value=1e+02 Score=20.42 Aligned_cols=45 Identities=16% Similarity=0.263 Sum_probs=34.6
Q ss_pred ccccccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHHHHhcCCCC
Q 020661 110 AQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSA 160 (323)
Q Consensus 110 ~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~~~~~~~~~ 160 (323)
.-++.++..+.|++|.+.+--+.+ -+.+.+++...|.++|..++.
T Consensus 21 ~vdf~kL~~~tLrrY~r~y~L~~~------~~~sK~qLa~aV~kHF~s~~V 65 (94)
T 2ld7_A 21 EVDLYQLQVNTLRRYKRHFKLPTR------PGLNKAQLVEIVGCHFKSIPV 65 (94)
T ss_dssp CCCCSSSCHHHHHHHHHHTTCCCC------SSCCHHHHHHHHHHHHTTCCC
T ss_pred CcCHHHCCHHHHHHHHHHhCCCCC------CCCCHHHHHHHHHHHHHcCCC
Confidence 356788999999999987743211 157899999999999987764
No 45
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=32.17 E-value=29 Score=22.91 Aligned_cols=63 Identities=13% Similarity=0.248 Sum_probs=42.2
Q ss_pred ccccCCCCChHHHHHHHHhcCCeeeeeecceeEEEEE-EeccccHHHHHHHHHHHhhCCCCChHHHHHH
Q 020661 2 IFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYA-KVLDKDVNNALDILADILQNSTFDQARITRE 69 (323)
Q Consensus 2 ~f~Gt~~~~~~~~~~~l~~~g~~~~~~t~~~~~~~~~-~~~~~~l~~~l~ll~~~l~~p~~~~~~~~~~ 69 (323)
+|-|+-..++.++.+.++.+|+.+..+++...+.+-+ .-+..+++.|.++ .=|.+++++|-..
T Consensus 14 v~TG~l~~~R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~gsK~~kA~~l-----gI~Ii~E~~f~~~ 77 (92)
T 1l7b_A 14 VITGELSRPREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARAL-----GVPTLTEEELYRL 77 (92)
T ss_dssp ECSTTTTSCHHHHHHHHHHTTCEEESCCSSSCCCBEECSSSSTTHHHHHCS-----SSCCEEHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHcCCEEeCcccCCeeEEEeCCCCChHHHHHHHc-----CCcEEeHHHHHHH
Confidence 4557755589999999999999988888875444333 2233567766553 4466777666443
No 46
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=32.10 E-value=1.1e+02 Score=25.79 Aligned_cols=65 Identities=14% Similarity=0.193 Sum_probs=42.8
Q ss_pred CChHHHHHHHHhcCCeeeeee-------cceeEEEEEEec--------cccHHHHHHHHHHHhhCCCCChHHHHHHHHHH
Q 020661 9 RTARDLEEEIENMGGHLNAYT-------SREQTTYYAKVL--------DKDVNNALDILADILQNSTFDQARITRERDVI 73 (323)
Q Consensus 9 ~~~~~~~~~l~~~g~~~~~~t-------~~~~~~~~~~~~--------~~~l~~~l~ll~~~l~~p~~~~~~~~~~~~~~ 73 (323)
.+..++.+.+...|..+.... ....-.+.++.. .++++.+++.|.+.+.... +++.++..|+.|
T Consensus 322 ~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~~-~~~~~~~~~~~~ 400 (405)
T 2vi8_A 322 LTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNVG-SEQALEEARQRV 400 (405)
T ss_dssp CCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCTT-CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhccc-ccccHHHHHHHH
Confidence 356678888888887765432 111112555443 6889999999999997765 666676666654
Q ss_pred H
Q 020661 74 L 74 (323)
Q Consensus 74 ~ 74 (323)
.
T Consensus 401 ~ 401 (405)
T 2vi8_A 401 A 401 (405)
T ss_dssp H
T ss_pred H
Confidence 3
No 47
>2l4w_A Uncharacterized protein; type IV secretion system, VIRB7, N0 domain, membrane protein xanthomonas, lipoprotein; NMR {Xanthomonas axonopodis PV}
Probab=31.43 E-value=68 Score=21.66 Aligned_cols=44 Identities=20% Similarity=0.342 Sum_probs=36.7
Q ss_pred CCCCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEcCC
Q 020661 99 YTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAV 142 (323)
Q Consensus 99 ~~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~ 142 (323)
++++-....+....|..+..++...-..+.|....+++.+.|+.
T Consensus 63 ~~~~DyTLy~~vs~I~tt~~~qA~~ELs~iY~akgv~vsv~~~~ 106 (120)
T 2l4w_A 63 NLPSDYTLIGPVSAISTTSVQQAATELSAVYAAQGVSVSVSANK 106 (120)
T ss_dssp CCSSCCBCCSTTTTCCBSCHHHHHHHHHHHHGGGTEEEEECSSE
T ss_pred cCccceeeehhhhhhhhhhHHHHHHHHHHHHHhCCeEEEEECCE
Confidence 55666777888899999999888888888888889999998873
No 48
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=30.15 E-value=58 Score=19.03 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=14.4
Q ss_pred HHHHhcc-CCCHHHHHHHHHH
Q 020661 281 ETTKLAY-RVSEADVTRARNQ 300 (323)
Q Consensus 281 ~~~~l~~-~is~~el~~ak~~ 300 (323)
-+.-|.. |+|++|++.|.++
T Consensus 33 K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 33 RRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHc
Confidence 3444555 9999999988654
No 49
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=27.39 E-value=69 Score=24.52 Aligned_cols=39 Identities=8% Similarity=0.193 Sum_probs=32.2
Q ss_pred ccccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHH
Q 020661 112 NIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVK 152 (323)
Q Consensus 112 ~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~ 152 (323)
.+.-++.+++.+++.+ .|.++.++++|+-.++++.+++.
T Consensus 134 ~~g~l~~~ev~~~l~~--Rp~~~~vIlTGr~ap~~l~e~AD 172 (196)
T 1g5t_A 134 AYDYLPLEEVISALNA--RPGHQTVIITGRGCHRDILDLAD 172 (196)
T ss_dssp HTTSSCHHHHHHHHHT--SCTTCEEEEECSSCCHHHHHHCS
T ss_pred cCCCCCHHHHHHHHHh--CcCCCEEEEECCCCcHHHHHhCc
Confidence 4466888999999975 57889999999999999988653
No 50
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=27.09 E-value=88 Score=26.07 Aligned_cols=40 Identities=13% Similarity=0.263 Sum_probs=30.5
Q ss_pred cccccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHH
Q 020661 111 QNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVK 152 (323)
Q Consensus 111 ~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~ 152 (323)
=.+++.+++++++..+.. . .++.+.++|+++.+.+.++++
T Consensus 255 I~LDn~~~~~l~~av~~l-~-~~v~ieaSGGIt~~~I~~~a~ 294 (320)
T 3paj_A 255 IMLDNFSLEMMREAVKIN-A-GRAALENSGNITLDNLKECAE 294 (320)
T ss_dssp EEEESCCHHHHHHHHHHH-T-TSSEEEEESSCCHHHHHHHHT
T ss_pred EEECCCCHHHHHHHHHHh-C-CCCeEEEECCCCHHHHHHHHH
Confidence 345778888888888653 2 578899999999888877664
No 51
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=23.20 E-value=49 Score=15.89 Aligned_cols=17 Identities=24% Similarity=0.495 Sum_probs=9.3
Q ss_pred cCCCCChHHHHHHHHhc
Q 020661 5 GTEKRTARDLEEEIENM 21 (323)
Q Consensus 5 Gt~~~~~~~~~~~l~~~ 21 (323)
|..+++..++.+.++.+
T Consensus 5 gvtrfdekqieelldnc 21 (31)
T 4h62_V 5 GVTRFDEKQIEELLDNC 21 (31)
T ss_dssp -----CHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHH
Confidence 55677888888887754
No 52
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.77 E-value=53 Score=23.04 Aligned_cols=37 Identities=14% Similarity=0.262 Sum_probs=27.0
Q ss_pred cccCCCCChHHHHHHHHhcCCeeeeeecceeEEEEEE
Q 020661 3 FKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAK 39 (323)
Q Consensus 3 f~Gt~~~~~~~~~~~l~~~g~~~~~~t~~~~~~~~~~ 39 (323)
+.|+...++.++.+.+..+||.+....+...|.+-+.
T Consensus 30 itG~~~~~r~~l~~~i~~~Gg~v~~~~s~~~ThLI~~ 66 (129)
T 2d8m_A 30 LSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICA 66 (129)
T ss_dssp EESCCTTHHHHHHHHHHHTTEEEESSCCTTCCEEEES
T ss_pred EeCCCcHHHHHHHHHHHHcCCEEeCCcCCCCeEEEec
Confidence 4466655688899999999999888776665544443
No 53
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=22.71 E-value=98 Score=19.17 Aligned_cols=22 Identities=14% Similarity=0.120 Sum_probs=16.5
Q ss_pred HHHHHhcc-CCCHHHHHHHHHHH
Q 020661 280 YETTKLAY-RVSEADVTRARNQV 301 (323)
Q Consensus 280 ~~~~~l~~-~is~~el~~ak~~~ 301 (323)
+-+.-|.. |++++|++.|.++.
T Consensus 37 ~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 37 TRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHc
Confidence 33444555 99999999998874
No 54
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=22.59 E-value=1.7e+02 Score=21.32 Aligned_cols=45 Identities=7% Similarity=0.172 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCeeeeeecceeEEEEEEeccccHHHHHHHHHHHhh
Q 020661 12 RDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQ 57 (323)
Q Consensus 12 ~~~~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~ 57 (323)
..+.+.|...|+++...++. .+.+++-...++.+.++..|++.+.
T Consensus 113 a~~f~aL~~~~InI~~is~S-e~~is~vv~~~d~~~Av~~Lh~~f~ 157 (167)
T 2dt9_A 113 AKMFQAVASTGANIEMIATS-EVRISVIIPAEYAEAALRAVHQAFE 157 (167)
T ss_dssp HHHHHHHHHTTCCCCEEEEC-SSEEEEEEEGGGHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCCEEEEEcc-CCEEEEEEeHHHHHHHHHHHHHHHc
Confidence 35666777778776554433 3477788888899999999988774
No 55
>1nh2_B Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 PDB: 1ytf_B*
Probab=22.38 E-value=1.2e+02 Score=17.52 Aligned_cols=35 Identities=9% Similarity=0.119 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCCC
Q 020661 272 DDLAYAIMYETTKLAYRVSEADVTRARNQVAASLPTY 308 (323)
Q Consensus 272 ~~~~~~~~~~~~~l~~~is~~el~~ak~~~~~~~~~~ 308 (323)
+.++..++..+..- |+++.-|+..|+.+..++..+
T Consensus 14 ~dVI~~vr~~F~~~--Gvde~vL~eLk~~We~KL~~s 48 (53)
T 1nh2_B 14 ESVVNEVREDFENA--GIDEQTLQDLKNIWQKKLTET 48 (53)
T ss_dssp HHHHHHTHHHHHHT--TCCHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHHc
Confidence 34444444444322 999999999999888877653
No 56
>1nvp_B Transcription initiation factor IIA alpha chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1
Probab=21.88 E-value=1.3e+02 Score=17.70 Aligned_cols=35 Identities=11% Similarity=-0.017 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCCC
Q 020661 272 DDLAYAIMYETTKLAYRVSEADVTRARNQVAASLPTY 308 (323)
Q Consensus 272 ~~~~~~~~~~~~~l~~~is~~el~~ak~~~~~~~~~~ 308 (323)
+.+++.++..+..- |+++.-|+..|+.+..++..+
T Consensus 18 edVI~~vr~~F~~~--Gvde~vL~eLk~~We~KL~~s 52 (57)
T 1nvp_B 18 EDVINDVRDIFLDD--GVDEQVLMELKTLWENKLMQS 52 (57)
T ss_dssp HHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHc
Confidence 34444444444322 999999999999998887654
No 57
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=20.86 E-value=1.6e+02 Score=21.88 Aligned_cols=44 Identities=11% Similarity=0.248 Sum_probs=32.4
Q ss_pred HHHHHHHhcCCeeeeeecceeEEEEEEeccccHHHHHHHHHHHhh
Q 020661 13 DLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQ 57 (323)
Q Consensus 13 ~~~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~ 57 (323)
.+.+.|...|+++...+ .....+++-...++.+.++..|++.+.
T Consensus 114 rif~aLa~~~InI~~is-tSe~~Is~vV~~~d~~~Av~~Lh~~F~ 157 (178)
T 2dtj_A 114 EFMEALRDVNVNIELIS-TSEIRISVLIREDDLDAAARALHEQFQ 157 (178)
T ss_dssp HHHHHHHHTTCCCCEEE-EETTEEEEEEEGGGHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCEEEEE-cCCCeEEEEEeHHHHHHHHHHHHHHHc
Confidence 56677777788766544 233667777788999999999998774
No 58
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=20.49 E-value=1.3e+02 Score=24.72 Aligned_cols=38 Identities=13% Similarity=0.276 Sum_probs=27.1
Q ss_pred cccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHH
Q 020661 113 IKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVK 152 (323)
Q Consensus 113 l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~ 152 (323)
++..++++++...+. . ..++.+.++|+++.+.+.++++
T Consensus 234 ld~~~~e~l~~~v~~-~-~~~~~I~ASGGIt~~~i~~~a~ 271 (296)
T 1qap_A 234 LDNFNTDQMREAVKR-V-NGQARLEVSGNVTAETLREFAE 271 (296)
T ss_dssp ESSCCHHHHHHHHHT-T-CTTCCEEECCCSCHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHH-h-CCCCeEEEECCCCHHHHHHHHH
Confidence 456788888887663 2 3467788888888887777665
No 59
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=20.37 E-value=88 Score=25.60 Aligned_cols=37 Identities=11% Similarity=0.288 Sum_probs=19.6
Q ss_pred cccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHH
Q 020661 113 IKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQV 151 (323)
Q Consensus 113 l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v 151 (323)
++..+++++++..+..- .++.+.++|+++.+.+.++.
T Consensus 224 LDn~~~~~l~~av~~~~--~~v~ieaSGGIt~~~i~~~a 260 (287)
T 3tqv_A 224 LDNFSGEDIDIAVSIAR--GKVALEVSGNIDRNSIVAIA 260 (287)
T ss_dssp EESCCHHHHHHHHHHHT--TTCEEEEESSCCTTTHHHHH
T ss_pred EcCCCHHHHHHHHHhhc--CCceEEEECCCCHHHHHHHH
Confidence 34555555555554331 35556666666655555443
Done!