Query 020662
Match_columns 323
No_of_seqs 290 out of 1624
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 04:10:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020662.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020662hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1719 Dual specificity phosp 100.0 6.2E-39 1.3E-43 268.4 15.7 173 39-213 1-174 (183)
2 smart00195 DSPc Dual specifici 100.0 1.4E-30 3E-35 218.7 17.3 137 65-207 1-137 (138)
3 PRK12361 hypothetical protein; 100.0 3.1E-30 6.8E-35 262.5 18.5 171 36-209 63-237 (547)
4 cd00127 DSPc Dual specificity 100.0 7.2E-29 1.6E-33 207.6 15.8 138 65-206 2-139 (139)
5 KOG1718 Dual specificity phosp 100.0 4.4E-28 9.5E-33 205.9 14.0 146 61-212 13-159 (198)
6 PF00782 DSPc: Dual specificit 100.0 1.7E-28 3.6E-33 204.5 11.1 132 72-207 1-132 (133)
7 KOG1716 Dual specificity phosp 99.9 1.6E-25 3.6E-30 210.6 16.5 149 63-214 73-221 (285)
8 KOG1717 Dual specificity phosp 99.9 7.2E-26 1.6E-30 204.7 12.9 146 64-213 171-316 (343)
9 PTZ00242 protein tyrosine phos 99.9 2.5E-24 5.4E-29 187.3 16.3 142 62-208 8-157 (166)
10 PTZ00393 protein tyrosine phos 99.9 1.6E-23 3.4E-28 189.7 16.0 133 72-210 94-230 (241)
11 KOG1720 Protein tyrosine phosp 99.9 1.3E-21 2.8E-26 172.1 15.2 121 84-209 88-208 (225)
12 PF03162 Y_phosphatase2: Tyros 99.8 1.1E-18 2.3E-23 151.7 8.8 139 64-206 6-147 (164)
13 COG2453 CDC14 Predicted protei 99.7 2.9E-16 6.4E-21 138.4 13.3 98 109-207 67-165 (180)
14 PF05706 CDKN3: Cyclin-depende 99.6 4.1E-16 8.9E-21 134.1 8.1 102 80-182 61-168 (168)
15 KOG2836 Protein tyrosine phosp 99.6 4.8E-15 1E-19 122.2 13.0 118 83-206 34-153 (173)
16 TIGR01244 conserved hypothetic 99.6 3E-14 6.5E-19 119.9 13.5 120 66-192 3-128 (135)
17 PF04273 DUF442: Putative phos 99.4 7.7E-13 1.7E-17 107.5 8.7 97 66-168 3-105 (110)
18 smart00404 PTPc_motif Protein 99.4 6.4E-12 1.4E-16 99.0 10.7 90 116-205 4-102 (105)
19 smart00012 PTPc_DSPc Protein t 99.4 6.4E-12 1.4E-16 99.0 10.7 90 116-205 4-102 (105)
20 PLN02727 NAD kinase 99.4 2.7E-12 5.9E-17 134.1 10.6 104 71-177 262-370 (986)
21 KOG1572 Predicted protein tyro 99.3 1.5E-11 3.3E-16 110.6 12.0 121 67-190 62-189 (249)
22 cd00047 PTPc Protein tyrosine 99.2 1.6E-10 3.4E-15 105.1 11.0 90 115-204 130-227 (231)
23 smart00194 PTPc Protein tyrosi 99.1 3.8E-10 8.3E-15 104.4 10.8 83 122-204 166-254 (258)
24 COG3453 Uncharacterized protei 99.1 1.3E-09 2.9E-14 88.4 10.9 115 66-187 4-124 (130)
25 KOG2283 Clathrin coat dissocia 99.1 5.6E-10 1.2E-14 110.3 9.4 137 66-208 16-173 (434)
26 PRK15375 pathogenicity island 99.0 2.3E-09 4.9E-14 106.4 11.6 93 115-207 423-527 (535)
27 PF13350 Y_phosphatase3: Tyros 99.0 1.5E-09 3.3E-14 94.0 7.8 111 69-184 17-159 (164)
28 KOG2386 mRNA capping enzyme, g 98.9 3.3E-09 7.2E-14 102.8 6.9 136 70-206 39-182 (393)
29 PHA02742 protein tyrosine phos 98.8 2.3E-08 5E-13 95.1 10.9 86 121-206 190-292 (303)
30 PHA02740 protein tyrosine phos 98.8 3.2E-08 6.9E-13 94.0 11.4 84 121-204 185-282 (298)
31 PHA02747 protein tyrosine phos 98.8 3.9E-08 8.3E-13 94.0 10.7 82 121-202 191-288 (312)
32 PF00102 Y_phosphatase: Protei 98.8 4.7E-08 1E-12 88.0 10.7 85 121-205 142-232 (235)
33 PHA02746 protein tyrosine phos 98.8 5.1E-08 1.1E-12 93.6 10.7 84 122-205 210-309 (323)
34 PHA02738 hypothetical protein; 98.7 9.2E-08 2E-12 91.7 10.5 84 121-204 186-288 (320)
35 KOG0790 Protein tyrosine phosp 98.7 4.6E-08 9.9E-13 95.0 8.3 120 84-203 374-514 (600)
36 KOG0792 Protein tyrosine phosp 98.7 4.8E-08 1E-12 103.0 8.2 90 115-206 1031-1126(1144)
37 COG5350 Predicted protein tyro 98.6 4.4E-07 9.5E-12 76.9 9.8 122 77-202 19-148 (172)
38 PF14566 PTPlike_phytase: Inos 98.6 1.1E-07 2.3E-12 81.5 5.7 64 107-172 85-148 (149)
39 COG2365 Protein tyrosine/serin 98.5 2E-07 4.3E-12 86.4 7.3 128 66-196 49-184 (249)
40 COG5599 PTP2 Protein tyrosine 98.5 1.8E-07 4E-12 85.8 6.9 98 115-213 185-297 (302)
41 KOG0791 Protein tyrosine phosp 98.1 1.7E-05 3.6E-10 76.0 9.2 91 118-208 256-352 (374)
42 KOG0789 Protein tyrosine phosp 98.0 2.4E-05 5.3E-10 76.9 9.7 60 147-206 298-363 (415)
43 KOG0793 Protein tyrosine phosp 97.9 7.6E-05 1.6E-09 76.4 9.8 89 115-205 895-990 (1004)
44 PF04179 Init_tRNA_PT: Initiat 97.8 0.00036 7.9E-09 69.8 13.4 134 68-205 292-449 (451)
45 KOG4228 Protein tyrosine phosp 97.3 0.00036 7.7E-09 75.0 6.0 69 135-203 713-790 (1087)
46 KOG4228 Protein tyrosine phosp 97.2 0.00066 1.4E-08 73.0 6.3 58 148-205 1018-1080(1087)
47 PF14671 DSPn: Dual specificit 95.7 0.025 5.4E-07 48.0 5.6 66 123-189 39-111 (141)
48 KOG4471 Phosphatidylinositol 3 91.8 0.28 6E-06 50.3 5.2 34 135-168 361-394 (717)
49 cd01518 RHOD_YceA Member of th 89.5 2.1 4.6E-05 33.2 7.6 28 146-176 59-86 (101)
50 PLN02160 thiosulfate sulfurtra 89.0 1 2.2E-05 37.7 5.6 30 145-177 78-107 (136)
51 PRK01415 hypothetical protein; 84.1 2.1 4.5E-05 39.8 5.4 90 69-176 105-196 (247)
52 PF06602 Myotub-related: Myotu 83.7 2.2 4.8E-05 41.6 5.7 56 25-80 41-105 (353)
53 COG0607 PspE Rhodanese-related 83.4 3.3 7.2E-05 32.1 5.7 71 86-176 15-86 (110)
54 KOG1089 Myotubularin-related p 80.4 2.8 6.1E-05 43.2 5.1 33 136-168 331-364 (573)
55 PRK00142 putative rhodanese-re 79.4 4.1 8.8E-05 39.1 5.7 27 147-176 170-196 (314)
56 cd01448 TST_Repeat_1 Thiosulfa 79.0 9.6 0.00021 30.4 7.1 30 146-177 77-106 (122)
57 COG1054 Predicted sulfurtransf 71.8 11 0.00023 36.0 6.1 93 66-176 103-197 (308)
58 cd01533 4RHOD_Repeat_2 Member 68.4 13 0.00029 29.0 5.4 27 147-176 65-91 (109)
59 PF04343 DUF488: Protein of un 64.7 22 0.00048 28.8 6.1 41 84-124 7-54 (122)
60 cd01520 RHOD_YbbB Member of th 61.5 21 0.00046 29.0 5.4 30 145-176 83-112 (128)
61 cd01523 RHOD_Lact_B Member of 59.2 11 0.00024 28.9 3.2 29 146-177 59-87 (100)
62 cd01528 RHOD_2 Member of the R 57.5 25 0.00055 27.0 5.0 28 147-177 57-84 (101)
63 TIGR03865 PQQ_CXXCW PQQ-depend 56.7 23 0.0005 30.4 5.1 29 146-176 114-142 (162)
64 PRK05569 flavodoxin; Provision 55.9 1E+02 0.0023 25.0 8.8 90 112-208 48-138 (141)
65 PF00581 Rhodanese: Rhodanese- 53.9 62 0.0013 24.6 6.8 82 88-176 10-97 (113)
66 cd01522 RHOD_1 Member of the R 52.2 29 0.00063 27.7 4.7 29 145-176 61-89 (117)
67 PF03861 ANTAR: ANTAR domain; 51.2 20 0.00043 25.0 3.1 25 164-188 16-40 (56)
68 PRK11784 tRNA 2-selenouridine 51.1 60 0.0013 31.6 7.5 28 147-176 87-114 (345)
69 PF03668 ATP_bind_2: P-loop AT 45.5 36 0.00078 32.3 4.7 18 150-167 244-261 (284)
70 cd01534 4RHOD_Repeat_3 Member 42.1 34 0.00073 26.0 3.4 26 148-176 56-81 (95)
71 PRK10886 DnaA initiator-associ 41.9 57 0.0012 29.1 5.3 39 131-172 24-62 (196)
72 cd01532 4RHOD_Repeat_1 Member 41.2 47 0.001 25.1 4.1 29 147-176 49-77 (92)
73 COG0279 GmhA Phosphoheptose is 40.6 43 0.00094 29.3 4.1 34 130-166 23-56 (176)
74 PRK08057 cobalt-precorrin-6x r 39.8 23 0.00051 32.8 2.6 83 71-159 45-136 (248)
75 PRK05320 rhodanese superfamily 39.4 67 0.0015 29.8 5.6 27 147-176 174-200 (257)
76 cd01447 Polysulfide_ST Polysul 38.8 39 0.00084 25.6 3.4 29 145-176 58-86 (103)
77 PRK11493 sseA 3-mercaptopyruva 38.7 26 0.00056 32.7 2.7 28 146-176 229-256 (281)
78 PRK05416 glmZ(sRNA)-inactivati 38.4 47 0.001 31.5 4.4 37 132-168 222-265 (288)
79 PF02673 BacA: Bacitracin resi 38.1 31 0.00068 32.2 3.1 28 156-185 159-186 (259)
80 cd01525 RHOD_Kc Member of the 37.8 47 0.001 25.4 3.7 26 148-176 65-90 (105)
81 PRK05600 thiamine biosynthesis 37.3 53 0.0011 32.2 4.7 25 149-176 333-357 (370)
82 cd01529 4RHOD_Repeats Member o 37.2 39 0.00085 25.6 3.1 28 146-176 54-81 (96)
83 PF02571 CbiJ: Precorrin-6x re 36.6 23 0.0005 32.8 2.0 85 71-159 46-139 (249)
84 TIGR00853 pts-lac PTS system, 36.4 29 0.00062 27.2 2.2 17 149-166 4-20 (95)
85 cd01526 RHOD_ThiF Member of th 35.7 50 0.0011 26.4 3.6 28 146-176 70-97 (122)
86 PRK12554 undecaprenyl pyrophos 35.0 36 0.00079 32.1 3.1 27 156-184 165-191 (276)
87 TIGR00715 precor6x_red precorr 34.6 29 0.00063 32.3 2.3 86 72-159 47-138 (256)
88 COG1660 Predicted P-loop-conta 34.2 63 0.0014 30.5 4.4 18 150-167 245-262 (286)
89 TIGR00753 undec_PP_bacA undeca 33.8 40 0.00086 31.5 3.1 27 156-184 159-185 (255)
90 PF10302 DUF2407: DUF2407 ubiq 33.2 23 0.0005 28.0 1.2 10 149-158 86-95 (97)
91 PF04364 DNA_pol3_chi: DNA pol 32.9 69 0.0015 26.7 4.1 24 134-157 15-38 (137)
92 cd01519 RHOD_HSP67B2 Member of 32.6 62 0.0014 24.7 3.6 27 147-176 65-91 (106)
93 PRK00281 undecaprenyl pyrophos 32.4 43 0.00093 31.4 3.1 27 156-184 163-189 (268)
94 PRK05728 DNA polymerase III su 31.7 58 0.0012 27.4 3.5 26 132-157 13-38 (142)
95 PRK10287 thiosulfate:cyanide s 31.5 91 0.002 24.7 4.4 27 147-176 59-85 (104)
96 COG2927 HolC DNA polymerase II 31.3 45 0.00097 28.4 2.7 22 136-157 17-38 (144)
97 cd01530 Cdc25 Cdc25 phosphatas 31.0 58 0.0013 26.3 3.3 25 146-172 66-91 (121)
98 PRK13938 phosphoheptose isomer 30.3 1.1E+02 0.0024 27.2 5.2 42 128-172 25-66 (196)
99 cd01531 Acr2p Eukaryotic arsen 30.0 1.2E+02 0.0026 23.7 4.9 22 147-168 61-82 (113)
100 smart00400 ZnF_CHCC zinc finge 29.8 67 0.0015 22.2 3.0 32 152-185 23-54 (55)
101 COG0794 GutQ Predicted sugar p 29.3 1.1E+02 0.0023 27.6 4.9 36 132-173 26-61 (202)
102 cd01527 RHOD_YgaP Member of th 28.9 67 0.0015 24.3 3.2 28 146-176 52-79 (99)
103 TIGR02981 phageshock_pspE phag 28.2 77 0.0017 24.9 3.5 27 147-176 57-83 (101)
104 cd01443 Cdc25_Acr2p Cdc25 enzy 28.1 96 0.0021 24.3 4.1 19 148-166 66-84 (113)
105 PF01904 DUF72: Protein of unk 27.6 4.6E+02 0.0099 23.6 10.3 78 80-157 132-213 (230)
106 PRK09875 putative hydrolase; P 27.5 2.2E+02 0.0047 27.0 7.0 19 82-100 39-57 (292)
107 KOG1530 Rhodanese-related sulf 27.4 1E+02 0.0023 25.9 4.1 72 85-166 32-106 (136)
108 TIGR03167 tRNA_sel_U_synt tRNA 27.3 1.2E+02 0.0027 29.0 5.3 29 146-176 72-100 (311)
109 cd05567 PTS_IIB_mannitol PTS_I 27.2 61 0.0013 24.5 2.6 18 149-167 1-18 (87)
110 KOG1004 Exosomal 3'-5' exoribo 27.0 1.3E+02 0.0028 27.4 5.0 39 147-187 184-222 (230)
111 PRK00414 gmhA phosphoheptose i 26.2 1.3E+02 0.0029 26.4 5.0 36 130-168 26-61 (192)
112 PRK00162 glpE thiosulfate sulf 26.0 1.7E+02 0.0036 22.6 5.1 28 146-176 56-83 (108)
113 PRK06646 DNA polymerase III su 25.7 84 0.0018 26.9 3.5 27 132-158 13-39 (154)
114 COG0422 ThiC Thiamine biosynth 25.7 2.7E+02 0.0058 27.7 7.2 115 87-208 88-249 (432)
115 COG0205 PfkA 6-phosphofructoki 25.7 2.7E+02 0.0059 27.2 7.4 80 84-163 88-177 (347)
116 TIGR00190 thiC thiamine biosyn 25.3 3.7E+02 0.008 26.9 8.2 113 87-206 87-243 (423)
117 PF13580 SIS_2: SIS domain; PD 25.1 1.7E+02 0.0036 24.1 5.2 36 130-168 17-52 (138)
118 PRK09590 celB cellobiose phosp 24.9 63 0.0014 25.8 2.4 18 149-168 2-19 (104)
119 cd07944 DRE_TIM_HOA_like 4-hyd 24.7 4E+02 0.0087 24.7 8.1 112 84-200 116-249 (266)
120 cd01521 RHOD_PspE2 Member of t 23.4 1.3E+02 0.0029 23.4 4.1 31 145-176 61-91 (110)
121 COG3673 Uncharacterized conser 22.0 4.6E+02 0.0099 25.8 7.9 68 129-199 102-178 (423)
122 cd03174 DRE_TIM_metallolyase D 21.9 5.8E+02 0.013 22.8 11.9 76 84-162 122-204 (265)
123 PF13292 DXP_synthase_N: 1-deo 21.5 1.2E+02 0.0026 28.5 3.9 41 108-156 229-269 (270)
124 cd01449 TST_Repeat_2 Thiosulfa 21.3 1.9E+02 0.0042 22.4 4.7 28 146-176 76-103 (118)
125 PRK13352 thiamine biosynthesis 21.3 3.8E+02 0.0083 26.9 7.4 115 87-208 87-251 (431)
126 PRK14071 6-phosphofructokinase 21.2 4.7E+02 0.01 25.6 8.1 85 83-168 100-194 (360)
127 PRK10499 PTS system N,N'-diace 21.1 95 0.0021 24.7 2.8 14 149-162 4-17 (106)
128 PF01964 ThiC: ThiC family; I 21.1 2.7E+02 0.0059 27.8 6.4 122 87-208 86-247 (420)
129 PRK05772 translation initiatio 20.9 2.1E+02 0.0046 28.1 5.6 15 145-159 164-178 (363)
130 COG1968 BacA Undecaprenyl pyro 20.7 1E+02 0.0023 29.0 3.3 26 157-184 165-190 (270)
No 1
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=100.00 E-value=6.2e-39 Score=268.41 Aligned_cols=173 Identities=61% Similarity=1.045 Sum_probs=163.6
Q ss_pred ccceeeecchhHHHHHHHhhhccccCcceecCcEEEcCCCCc-cCHHHHHhcCccEEEEcCCCCCccCCccccccCCcEE
Q 020662 39 AGARVLFYPTLLYNVVRNKIQSEFRWWDRVDQFIILGAVPFP-ADVLRLKELGVSGVVTLNESYETLVPTSLYHDHNIDH 117 (323)
Q Consensus 39 ~~~r~l~~P~ll~~~~~~~~~~~~~~~~~I~~~LylG~~p~a-~d~~~Lk~~GI~~VInL~~~~e~~~~~~~~~~~gi~y 117 (323)
+++|++|||||+||++++| ++.++|| +|++++.+|..|+. .+.+++++.|++.||++++++|...+...|+..||++
T Consensus 1 ~~ar~~fyptllynvv~~k-~s~~~wy-~~~~~v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~yE~~a~s~~wk~~giE~ 78 (183)
T KOG1719|consen 1 MGARVLFYPTLLYNVVREK-ASAFRWY-RIDEFVILGAMPFRSMDVPLIKKENVGGVVTLNEPYELLAPSNLWKNYGIEF 78 (183)
T ss_pred CCceeeecHHHHHHHHHHH-Hhhhcee-eecceEEEeecccccccchHHHhcCCCeEEEeCCchhhhhhhHHHHhcccee
Confidence 4799999999999999999 7788888 99999999999986 5778999999999999999999888888999999999
Q ss_pred EEEeCCCCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEcCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCCHH
Q 020662 118 LVIPTRDYLFAPSFADICQAVDFIHENASLGKTTYVHCKAGRGRSTTIVLCYLVEHRQMAPEAAYEYVRSIRPRVLLASS 197 (323)
Q Consensus 118 l~iP~~D~~~~p~~~~l~~a~~~I~~~~~~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~s~~~A~~~vr~~Rp~i~~~~~ 197 (323)
+.+|+.|....|..+.+.++++||++....|+.|||||++|++||+|+++||||.+.+|++++|++++|+.||.+.+.+.
T Consensus 79 L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLGktvYVHCKAGRtRSaTvV~cYLmq~~~wtpe~A~~~vr~iRp~VlL~~~ 158 (183)
T KOG1719|consen 79 LVIPTRDYTGAPSLENIQKAVEFIHKNASLGKTVYVHCKAGRTRSATVVACYLMQHKNWTPEAAVEHVRKIRPRVLLRPA 158 (183)
T ss_pred EEeccccccCCCCHHHHHHHHHHHHhccccCCeEEEEecCCCccchhhhhhhhhhhcCCCHHHHHHHHHhcCcceeecHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhc
Q 020662 198 QWQAVQDYYLQKVKKI 213 (323)
Q Consensus 198 q~~~L~~~~~~~~~~~ 213 (323)
||+.|.+|++....+.
T Consensus 159 Qw~~l~ef~~~~~~~~ 174 (183)
T KOG1719|consen 159 QWDVLKEFYKQIVANA 174 (183)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999996665544
No 2
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.97 E-value=1.4e-30 Score=218.70 Aligned_cols=137 Identities=23% Similarity=0.399 Sum_probs=126.8
Q ss_pred cceecCcEEEcCCCCccCHHHHHhcCccEEEEcCCCCCccCCccccccCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHH
Q 020662 65 WDRVDQFIILGAVPFPADVLRLKELGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTRDYLFAPSFADICQAVDFIHEN 144 (323)
Q Consensus 65 ~~~I~~~LylG~~p~a~d~~~Lk~~GI~~VInL~~~~e~~~~~~~~~~~gi~yl~iP~~D~~~~p~~~~l~~a~~~I~~~ 144 (323)
+++|+|+||+|+.|.+.+.+.|+++||++||||+.+.+. ....|++|+++|+.|....+....+..+++||+..
T Consensus 1 ~~~I~~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~~------~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~ 74 (138)
T smart00195 1 PSEILPHLYLGSYSSALNLALLKKLGITHVINVTNEVPN------LNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDA 74 (138)
T ss_pred CcEEeCCeEECChhHcCCHHHHHHcCCCEEEEccCCCCC------CCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999987542 12578999999999965677889999999999999
Q ss_pred hcCCCeEEEEcCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 020662 145 ASLGKTTYVHCKAGRGRSTTIVLCYLVEHRQMAPEAAYEYVRSIRPRVLLASSQWQAVQDYYL 207 (323)
Q Consensus 145 ~~~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~s~~~A~~~vr~~Rp~i~~~~~q~~~L~~~~~ 207 (323)
..+|++|||||.+|+||||++++||||+..|+++++|+++++++||.+.||+.|+++|+.|++
T Consensus 75 ~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~R~~~~p~~~~~~qL~~~e~ 137 (138)
T smart00195 75 EKKGGKVLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDRRPIISPNFGFLRQLIEYER 137 (138)
T ss_pred hcCCCeEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHCCccCCCHhHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999984
No 3
>PRK12361 hypothetical protein; Provisional
Probab=99.97 E-value=3.1e-30 Score=262.47 Aligned_cols=171 Identities=27% Similarity=0.443 Sum_probs=147.2
Q ss_pred hhhccceeeecchhHHHHHHH---hhhccccCcceecCcEEEcCCCCccCHHHHHhcCccEEEEcCCCCCccCCcccccc
Q 020662 36 LVGAGARVLFYPTLLYNVVRN---KIQSEFRWWDRVDQFIILGAVPFPADVLRLKELGVSGVVTLNESYETLVPTSLYHD 112 (323)
Q Consensus 36 l~~~~~r~l~~P~ll~~~~~~---~~~~~~~~~~~I~~~LylG~~p~a~d~~~Lk~~GI~~VInL~~~~e~~~~~~~~~~ 112 (323)
-++.++||+|+||+++.++.+ +.....+++++|+|+||+|+.+.+.+.+.|+++||++||||+.+.+.. ......
T Consensus 63 ~~~~~~~~l~~P~l~~~~~~~~~~r~~~~~~~~~~I~~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~~~~--~~~~~~ 140 (547)
T PRK12361 63 TIPWYIRWVFIPFLLGTRLYNAWARKRDSVPAIQKIDENLYLGCRLFPADLEKLKSNKITAILDVTAEFDGL--DWSLTE 140 (547)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcccCCCcceEEcCcEEECCCCCcccHHHHHHcCCCEEEEcccccccc--cccccc
Confidence 457899999999995443332 223456899999999999999999999999999999999999765431 112224
Q ss_pred CCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEcCCCCCchHHHHHHHHHHh-cCCCHHHHHHHHHHhCCC
Q 020662 113 HNIDHLVIPTRDYLFAPSFADICQAVDFIHENASLGKTTYVHCKAGRGRSTTIVLCYLVEH-RQMAPEAAYEYVRSIRPR 191 (323)
Q Consensus 113 ~gi~yl~iP~~D~~~~p~~~~l~~a~~~I~~~~~~g~~VLVHC~~G~gRSgtvv~aYLm~~-~g~s~~~A~~~vr~~Rp~ 191 (323)
.+++|+++|+.|.. .|..++++++++||++..++|++|||||++|+|||+++++||||.+ .++++++|+++||++||.
T Consensus 141 ~~i~yl~iPi~D~~-~p~~~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~ 219 (547)
T PRK12361 141 EDIDYLNIPILDHS-VPTLAQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKT 219 (547)
T ss_pred cCceEEEeecCCCC-CCcHHHHHHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCC
Confidence 67999999999974 7788999999999999999999999999999999999999999975 589999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 020662 192 VLLASSQWQAVQDYYLQK 209 (323)
Q Consensus 192 i~~~~~q~~~L~~~~~~~ 209 (323)
+.+|+.|+++|++|++..
T Consensus 220 v~~n~~q~~~l~~~~~~~ 237 (547)
T PRK12361 220 ARLNKRQLRALEKMLEQG 237 (547)
T ss_pred CCCCHHHHHHHHHHHHcC
Confidence 999999999999998543
No 4
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.96 E-value=7.2e-29 Score=207.63 Aligned_cols=138 Identities=27% Similarity=0.416 Sum_probs=127.2
Q ss_pred cceecCcEEEcCCCCccCHHHHHhcCccEEEEcCCCCCccCCccccccCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHH
Q 020662 65 WDRVDQFIILGAVPFPADVLRLKELGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTRDYLFAPSFADICQAVDFIHEN 144 (323)
Q Consensus 65 ~~~I~~~LylG~~p~a~d~~~Lk~~GI~~VInL~~~~e~~~~~~~~~~~gi~yl~iP~~D~~~~p~~~~l~~a~~~I~~~ 144 (323)
.++|.|+||+|+.|.+.+.+.|+++||++||||+.+.+. +.+...|+.|+++|+.|....+....+..+++||+..
T Consensus 2 ~~~i~~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~~----~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~ 77 (139)
T cd00127 2 LSEITPGLYLGSYPAASDKELLKKLGITHVLNVAKEVPN----ENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDA 77 (139)
T ss_pred cCEEcCCeEECChhHhcCHHHHHHcCCCEEEEcccCCCC----cccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999987653 3445689999999999986566778899999999999
Q ss_pred hcCCCeEEEEcCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 020662 145 ASLGKTTYVHCKAGRGRSTTIVLCYLVEHRQMAPEAAYEYVRSIRPRVLLASSQWQAVQDYY 206 (323)
Q Consensus 145 ~~~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~s~~~A~~~vr~~Rp~i~~~~~q~~~L~~~~ 206 (323)
...+++|||||.+|.|||++++++|||...++++++|++++|++||.+.+|+.|+.+|.+|+
T Consensus 78 ~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~~~~~~~~~~~~l~~~~ 139 (139)
T cd00127 78 REKGGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPIISPNAGFMRQLKEYE 139 (139)
T ss_pred HhcCCcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCCccCCCHHHHHHHHHhC
Confidence 98899999999999999999999999999999999999999999999999999999999985
No 5
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.95 E-value=4.4e-28 Score=205.92 Aligned_cols=146 Identities=23% Similarity=0.316 Sum_probs=131.2
Q ss_pred cccCcceecCcEEEcCCCCccCHHHHHhcCccEEEEcCCCCCccCCccccccCCcEEEEEeCCCCCCCCcHHHHHHHHHH
Q 020662 61 EFRWWDRVDQFIILGAVPFPADVLRLKELGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTRDYLFAPSFADICQAVDF 140 (323)
Q Consensus 61 ~~~~~~~I~~~LylG~~p~a~d~~~Lk~~GI~~VInL~~~~e~~~~~~~~~~~gi~yl~iP~~D~~~~p~~~~l~~a~~~ 140 (323)
...-.++|+++||+++-..+.+...|+++||++|||.+.+.+.. . -.+++|..+|+.|.+..++..+|+.+.+.
T Consensus 13 ~~~~~SqIt~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~pn~----~--l~~~qy~kv~~~D~p~~~l~~hfD~vAD~ 86 (198)
T KOG1718|consen 13 SIGGMSQITPSLFLSNGVAANDKLLLKKRKITCIINATTEVPNT----S--LPDIQYMKVPLEDTPQARLYDHFDPVADK 86 (198)
T ss_pred CccchhhcCcceeEeccccccCHHHHHhcCceEEEEcccCCCCc----c--CCCceeEEEEcccCCcchhhhhhhHHHHH
Confidence 44556899999999977778888999999999999999875431 1 24689999999999989999999999999
Q ss_pred HHHHhcCCCeEEEEcCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH-hhhh
Q 020662 141 IHENASLGKTTYVHCKAGRGRSTTIVLCYLVEHRQMAPEAAYEYVRSIRPRVLLASSQWQAVQDYYLQ-KVKK 212 (323)
Q Consensus 141 I~~~~~~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~s~~~A~~~vr~~Rp~i~~~~~q~~~L~~~~~~-~~~~ 212 (323)
|+....+||++||||.+|++||+++|+||||++.+|++.+|+.+++++||.+.||.+||+||..||+. +.+.
T Consensus 87 I~~v~~~gG~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vKa~RpiIRPN~GFw~QLi~YE~qL~g~~ 159 (198)
T KOG1718|consen 87 IHSVIMRGGKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVKARRPIIRPNVGFWRQLIDYEQQLFGNA 159 (198)
T ss_pred HHHHHhcCCcEEEEEccccchhHHHHHHHHHHHccchHHHHHHHHHhhCceeCCCccHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999944 4443
No 6
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.95 E-value=1.7e-28 Score=204.49 Aligned_cols=132 Identities=35% Similarity=0.527 Sum_probs=122.3
Q ss_pred EEEcCCCCccCHHHHHhcCccEEEEcCCCCCccCCccccccCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhcCCCeE
Q 020662 72 IILGAVPFPADVLRLKELGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTRDYLFAPSFADICQAVDFIHENASLGKTT 151 (323)
Q Consensus 72 LylG~~p~a~d~~~Lk~~GI~~VInL~~~~e~~~~~~~~~~~gi~yl~iP~~D~~~~p~~~~l~~a~~~I~~~~~~g~~V 151 (323)
||+|+.+.+. ...|+++||++|||++.+.+.. ..+...++.|+++|+.|....+....+..+++||+++..+|++|
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~~~~---~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~V 76 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEECPNP---YFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKV 76 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSSSTS---HHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEE
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCCcCc---hhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhccccee
Confidence 7999999999 9999999999999999875432 34566789999999999667888999999999999999999999
Q ss_pred EEEcCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 020662 152 YVHCKAGRGRSTTIVLCYLVEHRQMAPEAAYEYVRSIRPRVLLASSQWQAVQDYYL 207 (323)
Q Consensus 152 LVHC~~G~gRSgtvv~aYLm~~~g~s~~~A~~~vr~~Rp~i~~~~~q~~~L~~~~~ 207 (323)
||||.+|+||||++++||||...+|++++|+++++++||.+.|++.|+++|.+|++
T Consensus 77 lVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~e~ 132 (133)
T PF00782_consen 77 LVHCKAGLSRSGAVAAAYLMKKNGMSLEEAIEYVRSRRPQINPNPSFIRQLYEYEK 132 (133)
T ss_dssp EEEESSSSSHHHHHHHHHHHHHHTSSHHHHHHHHHHHSTTSTHHHHHHHHHHHHHH
T ss_pred EEEeCCCcccchHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999984
No 7
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.93 E-value=1.6e-25 Score=210.59 Aligned_cols=149 Identities=26% Similarity=0.361 Sum_probs=134.5
Q ss_pred cCcceecCcEEEcCCCCccCHHHHHhcCccEEEEcCCCCCccCCccccccCCcEEEEEeCCCCCCCCcHHHHHHHHHHHH
Q 020662 63 RWWDRVDQFIILGAVPFPADVLRLKELGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTRDYLFAPSFADICQAVDFIH 142 (323)
Q Consensus 63 ~~~~~I~~~LylG~~p~a~d~~~Lk~~GI~~VInL~~~~e~~~~~~~~~~~gi~yl~iP~~D~~~~p~~~~l~~a~~~I~ 142 (323)
.....|.|++|+|+...+.+.+.++++||++|+|+....+... .....+++|+++|+.|....++..++.++++||+
T Consensus 73 ~~~~~i~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~~~~~---~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~ 149 (285)
T KOG1716|consen 73 NPIVEILPNLYLGSQGVASDPDLLKKLGITHVLNVSSSCPNPR---FLKEQGIKYLRIPVEDNPSTDILQHFPEAISFIE 149 (285)
T ss_pred CCceeecCCceecCcccccchhhHHHcCCCEEEEecccCCccc---cccccCceEEeccccCCccccHHHHHHHHHHHHH
Confidence 4568899999999999999999999999999999998754321 1222389999999999988889999999999999
Q ss_pred HHhcCCCeEEEEcCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhhhcC
Q 020662 143 ENASLGKTTYVHCKAGRGRSTTIVLCYLVEHRQMAPEAAYEYVRSIRPRVLLASSQWQAVQDYYLQKVKKIG 214 (323)
Q Consensus 143 ~~~~~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~s~~~A~~~vr~~Rp~i~~~~~q~~~L~~~~~~~~~~~~ 214 (323)
.+..+|++|||||.+|++||+|+++||||++.+|++++|+++|+.+||.+.||.+|+.||.+|++...+...
T Consensus 150 ~a~~~~~~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R~~i~PN~gf~~QL~~~e~~l~~~~~ 221 (285)
T KOG1716|consen 150 KAREKGGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRRPIISPNFGFLRQLLEFEKRLSKKSP 221 (285)
T ss_pred HHHhCCCeEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhCCccCCCHHHHHHHHHHHHhhccCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999966665554
No 8
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.93 E-value=7.2e-26 Score=204.68 Aligned_cols=146 Identities=19% Similarity=0.238 Sum_probs=132.8
Q ss_pred CcceecCcEEEcCCCCccCHHHHHhcCccEEEEcCCCCCccCCccccccCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHH
Q 020662 64 WWDRVDQFIILGAVPFPADVLRLKELGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTRDYLFAPSFADICQAVDFIHE 143 (323)
Q Consensus 64 ~~~~I~~~LylG~~p~a~d~~~Lk~~GI~~VInL~~~~e~~~~~~~~~~~gi~yl~iP~~D~~~~p~~~~l~~a~~~I~~ 143 (323)
++.+|+|+||+|+...+.+.+.|+++||++|||++...+ ..+-....+.|..||+.|+...+....|.+|+.||++
T Consensus 171 FPV~ilp~LYLg~a~ds~NldvLkk~gI~yviNVTpnlp----n~fe~~g~f~YkqipisDh~Sqnls~ffpEAIsfIde 246 (343)
T KOG1717|consen 171 FPVEILPNLYLGCAKDSTNLDVLKKYGIKYVINVTPNLP----NNFENNGEFIYKQIPISDHASQNLSQFFPEAISFIDE 246 (343)
T ss_pred cchhhccchhcccccccccHHHHHhcCceEEEecCCCCc----chhhcCCceeEEeeeccchhhhhhhhhhHHHHHHHHH
Confidence 446899999999999999999999999999999987643 2233345689999999999888899999999999999
Q ss_pred HhcCCCeEEEEcCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhhhc
Q 020662 144 NASLGKTTYVHCKAGRGRSTTIVLCYLVEHRQMAPEAAYEYVRSIRPRVLLASSQWQAVQDYYLQKVKKI 213 (323)
Q Consensus 144 ~~~~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~s~~~A~~~vr~~Rp~i~~~~~q~~~L~~~~~~~~~~~ 213 (323)
++.++.-|||||-+|++||+|+++||||+...+++.+||++|+.++..+.||-.|+-||..|++.+....
T Consensus 247 Arsk~cgvLVHClaGISRSvTvtvaYLMqkl~lslndAyd~Vk~kksnisPNFnFMgQLldfertlgl~s 316 (343)
T KOG1717|consen 247 ARSKNCGVLVHCLAGISRSVTVTVAYLMQKLNLSLNDAYDFVKHKKSNISPNFNFMGQLLDFERTLGLES 316 (343)
T ss_pred hhccCCcEEEeeeccccchhHHHHHHHHHHhccchhhHHHHHHHhccCCCCCcchhHHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999999999999999999999999999999997766554
No 9
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.92 E-value=2.5e-24 Score=187.34 Aligned_cols=142 Identities=25% Similarity=0.278 Sum_probs=123.0
Q ss_pred ccCcceecCcEEEcCCCCcc----CHHHHHhcCccEEEEcCCCCCccCCccccccCCcEEEEEeCCCCCCCCcHHHHHHH
Q 020662 62 FRWWDRVDQFIILGAVPFPA----DVLRLKELGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTRDYLFAPSFADICQA 137 (323)
Q Consensus 62 ~~~~~~I~~~LylG~~p~a~----d~~~Lk~~GI~~VInL~~~~e~~~~~~~~~~~gi~yl~iP~~D~~~~p~~~~l~~a 137 (323)
.+--+.+...++.-..|... +++.|+++||++||+++++. ++.+.+...|+.|+++|+.|.. +|..+.+.++
T Consensus 8 ~~~~~~~~~r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~~---~~~~~~~~~gi~~~~~p~~D~~-~P~~~~i~~~ 83 (166)
T PTZ00242 8 DRQIEYVLFKFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGPT---YDAELLEKNGIEVHDWPFDDGA-PPPKAVIDNW 83 (166)
T ss_pred CcceeeeceEEEEecCCCcccHHHHHHHHHhCCCeEEEecCCCC---CCHHHHHHCCCEEEecCCCCCC-CCCHHHHHHH
Confidence 34456678888888888884 44888999999999998753 3555677889999999999864 8888889999
Q ss_pred HHHHHHHhcC----CCeEEEEcCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q 020662 138 VDFIHENASL----GKTTYVHCKAGRGRSTTIVLCYLVEHRQMAPEAAYEYVRSIRPRVLLASSQWQAVQDYYLQ 208 (323)
Q Consensus 138 ~~~I~~~~~~----g~~VLVHC~~G~gRSgtvv~aYLm~~~g~s~~~A~~~vr~~Rp~i~~~~~q~~~L~~~~~~ 208 (323)
++++++.+.. |++|+|||.+|+|||||+++||||++.++++++|++++|++||++. ++.|+.+|++|.+.
T Consensus 84 ~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~R~~~i-~~~Q~~~l~~~~~~ 157 (166)
T PTZ00242 84 LRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRKGAI-NQTQLQFLKKYKPR 157 (166)
T ss_pred HHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCCCc-hHHHHHHHHHHHHH
Confidence 9999987754 8999999999999999999999999888999999999999999875 79999999999943
No 10
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.91 E-value=1.6e-23 Score=189.66 Aligned_cols=133 Identities=21% Similarity=0.265 Sum_probs=117.3
Q ss_pred EEEcCCCCcc----CHHHHHhcCccEEEEcCCCCCccCCccccccCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhcC
Q 020662 72 IILGAVPFPA----DVLRLKELGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTRDYLFAPSFADICQAVDFIHENASL 147 (323)
Q Consensus 72 LylG~~p~a~----d~~~Lk~~GI~~VInL~~~~e~~~~~~~~~~~gi~yl~iP~~D~~~~p~~~~l~~a~~~I~~~~~~ 147 (323)
+.+=..|... .++.|+++||++||+++++ .++...++..||.|+++|+.|.. +|..+.+.++++++++.+..
T Consensus 94 fLi~~~P~~~~~~~yl~eLk~~gV~~lVrlcE~---~Yd~~~~~~~GI~~~~lpipDg~-aPs~~~i~~~l~~i~~~l~~ 169 (241)
T PTZ00393 94 ILILDAPTNDLLPLYIKEMKNYNVTDLVRTCER---TYNDGEITSAGINVHELIFPDGD-APTVDIVSNWLTIVNNVIKN 169 (241)
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCC---CCCHHHHHHcCCeEEEeecCCCC-CCCHHHHHHHHHHHHHHHhc
Confidence 5555567654 4578899999999999875 35667788999999999999974 88899999999999999888
Q ss_pred CCeEEEEcCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhh
Q 020662 148 GKTTYVHCKAGRGRSTTIVLCYLVEHRQMAPEAAYEYVRSIRPRVLLASSQWQAVQDYYLQKV 210 (323)
Q Consensus 148 g~~VLVHC~~G~gRSgtvv~aYLm~~~g~s~~~A~~~vr~~Rp~i~~~~~q~~~L~~~~~~~~ 210 (323)
|++|+|||++|+||||++++||||. .|+++++|+++||++||+++ +..|+++|++|++...
T Consensus 170 g~~VaVHC~AGlGRTGtl~AayLI~-~GmspeeAI~~VR~~RPgAI-n~~Q~~fL~~y~~~~~ 230 (241)
T PTZ00393 170 NRAVAVHCVAGLGRAPVLASIVLIE-FGMDPIDAIVFIRDRRKGAI-NKRQLQFLKAYKKKKK 230 (241)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-cCCCHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcc
Confidence 9999999999999999999999997 89999999999999999985 8999999999996543
No 11
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.88 E-value=1.3e-21 Score=172.13 Aligned_cols=121 Identities=27% Similarity=0.398 Sum_probs=112.5
Q ss_pred HHHHhcCccEEEEcCCCCCccCCccccccCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEcCCCCCchH
Q 020662 84 LRLKELGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTRDYLFAPSFADICQAVDFIHENASLGKTTYVHCKAGRGRST 163 (323)
Q Consensus 84 ~~Lk~~GI~~VInL~~~~e~~~~~~~~~~~gi~yl~iP~~D~~~~p~~~~l~~a~~~I~~~~~~g~~VLVHC~~G~gRSg 163 (323)
..++.+++++++.|+.. .++.+.+...||.|+++|+.|.. .|....+.++++.++.+.+ |++|.|||++|.||||
T Consensus 88 ~~~~~~~v~s~vrln~~---~yd~~~f~~~Gi~h~~l~f~Dg~-tP~~~~v~~fv~i~e~~~~-~g~iaVHCkaGlGRTG 162 (225)
T KOG1720|consen 88 QYFKNNNVTSIVRLNKR---LYDAKRFTDAGIDHHDLFFADGS-TPTDAIVKEFVKIVENAEK-GGKIAVHCKAGLGRTG 162 (225)
T ss_pred HHhhhcccceEEEcCCC---CCChHHhcccCceeeeeecCCCC-CCCHHHHHHHHHHHHHHHh-cCeEEEEeccCCCchh
Confidence 45678999999999886 56778889999999999999974 9999999999999999988 9999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHh
Q 020662 164 TIVLCYLVEHRQMAPEAAYEYVRSIRPRVLLASSQWQAVQDYYLQK 209 (323)
Q Consensus 164 tvv~aYLm~~~g~s~~~A~~~vr~~Rp~i~~~~~q~~~L~~~~~~~ 209 (323)
|+++||||+..|+++.+|+.++|..||+++.+++|...+.+|..+.
T Consensus 163 ~liAc~lmy~~g~ta~eaI~~lR~~RpG~V~gpqQ~~l~~~q~~~~ 208 (225)
T KOG1720|consen 163 TLIACYLMYEYGMTAGEAIAWLRICRPGAVIGPQQHKLLHKQRDLW 208 (225)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCccccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998753
No 12
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.77 E-value=1.1e-18 Score=151.65 Aligned_cols=139 Identities=17% Similarity=0.235 Sum_probs=93.2
Q ss_pred CcceecCcEEEcCCCCccCHHHHHhcCccEEEEcCCCCCccCCccccccCCcEEEEEeCCCCCC---CCcHHHHHHHHHH
Q 020662 64 WWDRVDQFIILGAVPFPADVLRLKELGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTRDYLF---APSFADICQAVDF 140 (323)
Q Consensus 64 ~~~~I~~~LylG~~p~a~d~~~Lk~~GI~~VInL~~~~e~~~~~~~~~~~gi~yl~iP~~D~~~---~p~~~~l~~a~~~ 140 (323)
+|..|.++||.|++|.+.++++|+++|+++||+|+.+........+++++||+++++++..... ....+.+.++++.
T Consensus 6 nF~~V~~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ 85 (164)
T PF03162_consen 6 NFGMVEPGVYRSAQPTPANFPFLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEI 85 (164)
T ss_dssp T-EEEETTEEEESS--HHHHHHHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHH
T ss_pred cccCCCCCccCCCCCChhhHHHHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHH
Confidence 5778999999999999999999999999999999987432222346688999999999986532 2356778888887
Q ss_pred HHHHhcCCCeEEEEcCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 020662 141 IHENASLGKTTYVHCKAGRGRSTTIVLCYLVEHRQMAPEAAYEYVRSIRPRVLLASSQWQAVQDYY 206 (323)
Q Consensus 141 I~~~~~~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~s~~~A~~~vr~~Rp~i~~~~~q~~~L~~~~ 206 (323)
|.+.. +.||||||..|.+|||++++||- +.+||+...|++.++..-.. ..+....++++.|.
T Consensus 86 ild~~--n~PvLiHC~~G~~rTG~vvg~lR-k~Q~W~~~~i~~Ey~~f~~~-~~~~~~~~fIe~f~ 147 (164)
T PF03162_consen 86 ILDPR--NYPVLIHCNHGKDRTGLVVGCLR-KLQGWSLSSIFDEYRRFAGP-KIRYLDEQFIELFD 147 (164)
T ss_dssp HH-GG--G-SEEEE-SSSSSHHHHHHHHHH-HHTTB-HHHHHHHHHHHHGG-G--HHHHHHHHT--
T ss_pred HhCCC--CCCEEEEeCCCCcchhhHHHHHH-HHcCCCHHHHHHHHHHhcCC-CCcHHHHHHHHhcC
Confidence 76543 48999999999999999999999 67999999999999875432 45677778888887
No 13
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.69 E-value=2.9e-16 Score=138.36 Aligned_cols=98 Identities=31% Similarity=0.448 Sum_probs=83.2
Q ss_pred ccccCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEcCCCCCchHHHHHHHHHHhcCC-CHHHHHHHHHH
Q 020662 109 LYHDHNIDHLVIPTRDYLFAPSFADICQAVDFIHENASLGKTTYVHCKAGRGRSTTIVLCYLVEHRQM-APEAAYEYVRS 187 (323)
Q Consensus 109 ~~~~~gi~yl~iP~~D~~~~p~~~~l~~a~~~I~~~~~~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~-s~~~A~~~vr~ 187 (323)
.....|+.++++|+.|+. .|....+.+++++|+...++|++|+|||.+|+|||||+++||||.+.|. ..++|+.+++.
T Consensus 67 ~~~~~~~~~~~~~~~D~~-~p~~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~ 145 (180)
T COG2453 67 IEENDGIQVLHLPILDGT-VPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRR 145 (180)
T ss_pred eeccCCceeeeeeecCCC-CCcHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 345678999999999984 8888999999999999999999999999999999999999999998555 77777888888
Q ss_pred hCCCCCCCHHHHHHHHHHHH
Q 020662 188 IRPRVLLASSQWQAVQDYYL 207 (323)
Q Consensus 188 ~Rp~i~~~~~q~~~L~~~~~ 207 (323)
+||..+....|..+..+...
T Consensus 146 ~r~~~v~~~~q~~~~~e~~~ 165 (180)
T COG2453 146 RRPGAVVTEIQHLFELEQEL 165 (180)
T ss_pred cCCcccccHHHHHHHHHHHH
Confidence 88866667777666665553
No 14
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.64 E-value=4.1e-16 Score=134.12 Aligned_cols=102 Identities=34% Similarity=0.515 Sum_probs=71.6
Q ss_pred ccCHHHHHhcCccEEEEcCCCCCcc---CC--ccccccCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhcCCCeEEEE
Q 020662 80 PADVLRLKELGVSGVVTLNESYETL---VP--TSLYHDHNIDHLVIPTRDYLFAPSFADICQAVDFIHENASLGKTTYVH 154 (323)
Q Consensus 80 a~d~~~Lk~~GI~~VInL~~~~e~~---~~--~~~~~~~gi~yl~iP~~D~~~~p~~~~l~~a~~~I~~~~~~g~~VLVH 154 (323)
..|++.|+..|++.||.+++..|.. .+ ...++++|+.++|+|+.|.. +|....+.++++.|...+.+|++|+||
T Consensus 61 ~~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~-aPd~~~~~~i~~eL~~~L~~g~~V~vH 139 (168)
T PF05706_consen 61 QADLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGS-APDFAAAWQILEELAARLENGRKVLVH 139 (168)
T ss_dssp HHHHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS----HHHHHHHHHHHHHHHHTT--EEEE
T ss_pred HHHHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 4577789999999999999876541 12 24678899999999999986 777777888889999999999999999
Q ss_pred cCCCCCchHHHHHHHHHHh-cCCCHHHHH
Q 020662 155 CKAGRGRSTTIVLCYLVEH-RQMAPEAAY 182 (323)
Q Consensus 155 C~~G~gRSgtvv~aYLm~~-~g~s~~~A~ 182 (323)
|..|.||||+|++|+|+.- ..+++++|+
T Consensus 140 C~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 140 CRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp -SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 9999999999999999973 347999986
No 15
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=99.63 E-value=4.8e-15 Score=122.18 Aligned_cols=118 Identities=28% Similarity=0.341 Sum_probs=99.8
Q ss_pred HHHHHhcCccEEEEcCCCCCccCCccccccCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhc--CCCeEEEEcCCCCC
Q 020662 83 VLRLKELGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTRDYLFAPSFADICQAVDFIHENAS--LGKTTYVHCKAGRG 160 (323)
Q Consensus 83 ~~~Lk~~GI~~VInL~~~~e~~~~~~~~~~~gi~yl~iP~~D~~~~p~~~~l~~a~~~I~~~~~--~g~~VLVHC~~G~g 160 (323)
++.|+++|+++||.+|++ .++....+..||+.+.+|..|.. +|..+.++.-+.++..... -|..|.|||.+|.|
T Consensus 34 ieELkKygvttvVRVCe~---TYdt~~lek~GI~Vldw~f~dg~-ppp~qvv~~w~~l~~~~f~e~p~~cvavhcvaglg 109 (173)
T KOG2836|consen 34 IEELKKYGVTTVVRVCEP---TYDTTPLEKEGITVLDWPFDDGA-PPPNQVVDDWLSLVKTKFREEPGCCVAVHCVAGLG 109 (173)
T ss_pred HHHHHhcCCeEEEEeccc---ccCCchhhhcCceEeecccccCC-CCchHHHHHHHHHHHHHHhhCCCCeEEEEeecccC
Confidence 467899999999999987 46667778899999999999974 6666666666665444333 37899999999999
Q ss_pred chHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 020662 161 RSTTIVLCYLVEHRQMAPEAAYEYVRSIRPRVLLASSQWQAVQDYY 206 (323)
Q Consensus 161 RSgtvv~aYLm~~~g~s~~~A~~~vr~~Rp~i~~~~~q~~~L~~~~ 206 (323)
|++.+++.-|+. .||..++|++++|.+|.++ +|..|+.+|++|.
T Consensus 110 rapvlvalalie-~gmkyedave~ir~krrga-~n~kql~~lekyr 153 (173)
T KOG2836|consen 110 RAPVLVALALIE-AGMKYEDAVEMIRQKRRGA-INSKQLLYLEKYR 153 (173)
T ss_pred cchHHHHHHHHH-ccccHHHHHHHHHHHhhcc-ccHHHHHHHHHhC
Confidence 999999999996 9999999999999999876 8999999999987
No 16
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.58 E-value=3e-14 Score=119.92 Aligned_cols=120 Identities=13% Similarity=0.091 Sum_probs=96.0
Q ss_pred ceecCcEEEcCCCCccCHHHHHhcCccEEEEcCCCCCccC-Ccc-----ccccCCcEEEEEeCCCCCCCCcHHHHHHHHH
Q 020662 66 DRVDQFIILGAVPFPADVLRLKELGVSGVVTLNESYETLV-PTS-----LYHDHNIDHLVIPTRDYLFAPSFADICQAVD 139 (323)
Q Consensus 66 ~~I~~~LylG~~p~a~d~~~Lk~~GI~~VInL~~~~e~~~-~~~-----~~~~~gi~yl~iP~~D~~~~p~~~~l~~a~~ 139 (323)
.+|++.+|+++.+.+.+++.|+++||++|||+....|... +.. .....|+.|+++|+... ......+..+.+
T Consensus 3 ~~i~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~--~~~~~~v~~f~~ 80 (135)
T TIGR01244 3 RKLTEHLYVSPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAG--DITPDDVETFRA 80 (135)
T ss_pred eEcCCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCC--CCCHHHHHHHHH
Confidence 4789999999999999999999999999999997755322 221 22457999999998864 345666777777
Q ss_pred HHHHHhcCCCeEEEEcCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHhCCCC
Q 020662 140 FIHENASLGKTTYVHCKAGRGRSTTIVLCYLVEHRQMAPEAAYEYVRSIRPRV 192 (323)
Q Consensus 140 ~I~~~~~~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~s~~~A~~~vr~~Rp~i 192 (323)
+++. ..+|||+||++|. ||+.+.+.++.. .|++.+++++..+......
T Consensus 81 ~~~~---~~~pvL~HC~sG~-Rt~~l~al~~~~-~g~~~~~i~~~~~~~G~~~ 128 (135)
T TIGR01244 81 AIGA---AEGPVLAYCRSGT-RSSLLWGFRQAA-EGVPVEEIVRRAQAAGYDL 128 (135)
T ss_pred HHHh---CCCCEEEEcCCCh-HHHHHHHHHHHH-cCCCHHHHHHHHHHcCCCc
Confidence 7752 3589999999999 999998777765 8999999999998766543
No 17
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=99.41 E-value=7.7e-13 Score=107.51 Aligned_cols=97 Identities=21% Similarity=0.322 Sum_probs=66.0
Q ss_pred ceecCcEEEcCCCCccCHHHHHhcCccEEEEcCCCCCccC-C-----ccccccCCcEEEEEeCCCCCCCCcHHHHHHHHH
Q 020662 66 DRVDQFIILGAVPFPADVLRLKELGVSGVVTLNESYETLV-P-----TSLYHDHNIDHLVIPTRDYLFAPSFADICQAVD 139 (323)
Q Consensus 66 ~~I~~~LylG~~p~a~d~~~Lk~~GI~~VInL~~~~e~~~-~-----~~~~~~~gi~yl~iP~~D~~~~p~~~~l~~a~~ 139 (323)
.+|++.++++++|.+.+++.|++.|+++|||++...|... + ....++.|+.|+++|+... .+..+.+..+.+
T Consensus 3 ~~i~~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~--~~~~~~v~~f~~ 80 (110)
T PF04273_consen 3 RQISDDLSVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGG--AITEEDVEAFAD 80 (110)
T ss_dssp EEEETTEEEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TT--T--HHHHHHHHH
T ss_pred EecCCCeEECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCC--CCCHHHHHHHHH
Confidence 5789999999999999999999999999999987765421 1 1346789999999999864 567778887777
Q ss_pred HHHHHhcCCCeEEEEcCCCCCchHHHHHH
Q 020662 140 FIHENASLGKTTYVHCKAGRGRSTTIVLC 168 (323)
Q Consensus 140 ~I~~~~~~g~~VLVHC~~G~gRSgtvv~a 168 (323)
.++. ..+|||+||+.|. |++++-+.
T Consensus 81 ~l~~---~~~Pvl~hC~sG~-Ra~~l~~l 105 (110)
T PF04273_consen 81 ALES---LPKPVLAHCRSGT-RASALWAL 105 (110)
T ss_dssp HHHT---TTTSEEEE-SCSH-HHHHHHHH
T ss_pred HHHh---CCCCEEEECCCCh-hHHHHHHH
Confidence 7765 3589999999997 99877443
No 18
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.36 E-value=6.4e-12 Score=99.00 Aligned_cols=90 Identities=19% Similarity=0.176 Sum_probs=71.7
Q ss_pred EEEEEeCCCCCCCCcHHHHHHHHHHHHHHhc---CCCeEEEEcCCCCCchHHHHHHHHHHhc------CCCHHHHHHHHH
Q 020662 116 DHLVIPTRDYLFAPSFADICQAVDFIHENAS---LGKTTYVHCKAGRGRSTTIVLCYLVEHR------QMAPEAAYEYVR 186 (323)
Q Consensus 116 ~yl~iP~~D~~~~p~~~~l~~a~~~I~~~~~---~g~~VLVHC~~G~gRSgtvv~aYLm~~~------g~s~~~A~~~vr 186 (323)
.|.+.++.|...+.....+.++++.+++... .+++|+|||.+|.||||+++++|++... ..++.+++..+|
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00404 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 3445555565434455788888888877764 2689999999999999999999999743 258999999999
Q ss_pred HhCCCCCCCHHHHHHHHHH
Q 020662 187 SIRPRVLLASSQWQAVQDY 205 (323)
Q Consensus 187 ~~Rp~i~~~~~q~~~L~~~ 205 (323)
..||+...+..|+.++...
T Consensus 84 ~~r~~~~~~~~q~~~~~~~ 102 (105)
T smart00404 84 KQRPGMVQTFEQYLFLYRA 102 (105)
T ss_pred hhhhhhCCcHHHHHHHHHH
Confidence 9999999999999887754
No 19
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.36 E-value=6.4e-12 Score=99.00 Aligned_cols=90 Identities=19% Similarity=0.176 Sum_probs=71.7
Q ss_pred EEEEEeCCCCCCCCcHHHHHHHHHHHHHHhc---CCCeEEEEcCCCCCchHHHHHHHHHHhc------CCCHHHHHHHHH
Q 020662 116 DHLVIPTRDYLFAPSFADICQAVDFIHENAS---LGKTTYVHCKAGRGRSTTIVLCYLVEHR------QMAPEAAYEYVR 186 (323)
Q Consensus 116 ~yl~iP~~D~~~~p~~~~l~~a~~~I~~~~~---~g~~VLVHC~~G~gRSgtvv~aYLm~~~------g~s~~~A~~~vr 186 (323)
.|.+.++.|...+.....+.++++.+++... .+++|+|||.+|.||||+++++|++... ..++.+++..+|
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00012 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 3445555565434455788888888877764 2689999999999999999999999743 258999999999
Q ss_pred HhCCCCCCCHHHHHHHHHH
Q 020662 187 SIRPRVLLASSQWQAVQDY 205 (323)
Q Consensus 187 ~~Rp~i~~~~~q~~~L~~~ 205 (323)
..||+...+..|+.++...
T Consensus 84 ~~r~~~~~~~~q~~~~~~~ 102 (105)
T smart00012 84 KQRPGMVQTFEQYLFLYRA 102 (105)
T ss_pred hhhhhhCCcHHHHHHHHHH
Confidence 9999999999999887754
No 20
>PLN02727 NAD kinase
Probab=99.36 E-value=2.7e-12 Score=134.12 Aligned_cols=104 Identities=19% Similarity=0.184 Sum_probs=86.8
Q ss_pred cEEEcCCCCccCHHHHHhcCccEEEEcCCCCCccCC-----ccccccCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHh
Q 020662 71 FIILGAVPFPADVLRLKELGVSGVVTLNESYETLVP-----TSLYHDHNIDHLVIPTRDYLFAPSFADICQAVDFIHENA 145 (323)
Q Consensus 71 ~LylG~~p~a~d~~~Lk~~GI~~VInL~~~~e~~~~-----~~~~~~~gi~yl~iP~~D~~~~p~~~~l~~a~~~I~~~~ 145 (323)
.+|++++|.+.+++.|.+.||++|||++.+.+...+ ....++.|++|+++|+.+. .+|..+.+.++.+++++.
T Consensus 262 ~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~-~apt~EqVe~fa~~l~~s- 339 (986)
T PLN02727 262 AFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVR-TAPSAEQVEKFASLVSDS- 339 (986)
T ss_pred eEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCC-CCCCHHHHHHHHHHHHhh-
Confidence 479999999999999999999999999987652111 1234568999999999775 388899999999999553
Q ss_pred cCCCeEEEEcCCCCCchHHHHHHHHHHhcCCC
Q 020662 146 SLGKTTYVHCKAGRGRSTTIVLCYLVEHRQMA 177 (323)
Q Consensus 146 ~~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~s 177 (323)
..+|||+||+.|.+|+|+|++||+.+.-+..
T Consensus 340 -lpkPVLvHCKSGarRAGamvA~yl~~~~~~~ 370 (986)
T PLN02727 340 -SKKPIYLHSKEGVWRTSAMVSRWKQYMTRSA 370 (986)
T ss_pred -cCCCEEEECCCCCchHHHHHHHHHHHHcccc
Confidence 3599999999999999999999999876654
No 21
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=99.32 E-value=1.5e-11 Score=110.59 Aligned_cols=121 Identities=16% Similarity=0.186 Sum_probs=96.9
Q ss_pred eecCcEEEcCCCCccCHHHHHhcCccEEEEcCCCCCccCCccccccCCcEEEEEeCCCCC-------CCCcHHHHHHHHH
Q 020662 67 RVDQFIILGAVPFPADVLRLKELGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTRDYL-------FAPSFADICQAVD 139 (323)
Q Consensus 67 ~I~~~LylG~~p~a~d~~~Lk~~GI~~VInL~~~~e~~~~~~~~~~~gi~yl~iP~~D~~-------~~p~~~~l~~a~~ 139 (323)
.|.++||.+++|.+.++.+|+.+++++||.|+.+........+++.++|++++|.+...- .......+..+++
T Consensus 62 ~V~~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~~~l~ 141 (249)
T KOG1572|consen 62 MVDNGLYRSGFPRPENFSFLKTLHLKSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEPFVNIPDHSIRKALK 141 (249)
T ss_pred ccccceeecCCCCccchHHHHHhhhheEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCCCCCChHHHHHHHHH
Confidence 348899999999999999999999999999998853222334788999999999997643 1123466777777
Q ss_pred HHHHHhcCCCeEEEEcCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHhCC
Q 020662 140 FIHENASLGKTTYVHCKAGRGRSTTIVLCYLVEHRQMAPEAAYEYVRSIRP 190 (323)
Q Consensus 140 ~I~~~~~~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~s~~~A~~~vr~~Rp 190 (323)
++-. ..+.++||||..|..|+|++|.|.- +.++|+..-.++..+..-.
T Consensus 142 ~lld--~~N~P~Lihc~rGkhRtg~lVgclR-klq~W~lssil~Ey~~fa~ 189 (249)
T KOG1572|consen 142 VLLD--KRNYPILIHCKRGKHRTGCLVGCLR-KLQNWSLSSILDEYLRFAG 189 (249)
T ss_pred HHhc--ccCCceEEecCCCCcchhhhHHHHH-HHhccchhHHHHHHHHhcc
Confidence 7443 3468999999999999999999976 6799999999887766543
No 22
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=99.18 E-value=1.6e-10 Score=105.07 Aligned_cols=90 Identities=19% Similarity=0.234 Sum_probs=71.9
Q ss_pred cEEEEEe-CCCCCCCCcHHHHHHHHHHHHHHhc--CCCeEEEEcCCCCCchHHHHHHHHHHhc-----CCCHHHHHHHHH
Q 020662 115 IDHLVIP-TRDYLFAPSFADICQAVDFIHENAS--LGKTTYVHCKAGRGRSTTIVLCYLVEHR-----QMAPEAAYEYVR 186 (323)
Q Consensus 115 i~yl~iP-~~D~~~~p~~~~l~~a~~~I~~~~~--~g~~VLVHC~~G~gRSgtvv~aYLm~~~-----g~s~~~A~~~vr 186 (323)
+.+++++ +.|...++....+.+++..+++... .+++|+|||.+|.||||++++++++... ..++.+++..+|
T Consensus 130 V~~~~~~~W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~iR 209 (231)
T cd00047 130 VTHFQYTGWPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELR 209 (231)
T ss_pred EEEEeECCCCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 4455544 5565544555778888887777653 3689999999999999999999887532 579999999999
Q ss_pred HhCCCCCCCHHHHHHHHH
Q 020662 187 SIRPRVLLASSQWQAVQD 204 (323)
Q Consensus 187 ~~Rp~i~~~~~q~~~L~~ 204 (323)
+.||+++.+..|+.++..
T Consensus 210 ~~R~~~v~~~~Qy~f~~~ 227 (231)
T cd00047 210 SQRPGMVQTEEQYIFLYR 227 (231)
T ss_pred hccccccCCHHHHHHHHH
Confidence 999999999999999875
No 23
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=99.12 E-value=3.8e-10 Score=104.37 Aligned_cols=83 Identities=22% Similarity=0.247 Sum_probs=67.8
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHhcC-CCeEEEEcCCCCCchHHHHHHHHHHh-----cCCCHHHHHHHHHHhCCCCCCC
Q 020662 122 TRDYLFAPSFADICQAVDFIHENASL-GKTTYVHCKAGRGRSTTIVLCYLVEH-----RQMAPEAAYEYVRSIRPRVLLA 195 (323)
Q Consensus 122 ~~D~~~~p~~~~l~~a~~~I~~~~~~-g~~VLVHC~~G~gRSgtvv~aYLm~~-----~g~s~~~A~~~vr~~Rp~i~~~ 195 (323)
+.|...+.....+.+++..++..... ++||+|||.+|.||||++++++++.. ...++.+++..+|.+|++++.+
T Consensus 166 W~d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~~ 245 (258)
T smart00194 166 WPDHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPGMVQT 245 (258)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhccccccCC
Confidence 44554343567777777777766543 68999999999999999999988742 3579999999999999999999
Q ss_pred HHHHHHHHH
Q 020662 196 SSQWQAVQD 204 (323)
Q Consensus 196 ~~q~~~L~~ 204 (323)
..|+.++..
T Consensus 246 ~~Qy~f~~~ 254 (258)
T smart00194 246 EEQYIFLYR 254 (258)
T ss_pred HHHHHHHHH
Confidence 999999875
No 24
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.08 E-value=1.3e-09 Score=88.42 Aligned_cols=115 Identities=15% Similarity=0.137 Sum_probs=88.7
Q ss_pred ceecCcEEEcCCCCccCHHHHHhcCccEEEEcCCCCCccCCc------cccccCCcEEEEEeCCCCCCCCcHHHHHHHHH
Q 020662 66 DRVDQFIILGAVPFPADVLRLKELGVSGVVTLNESYETLVPT------SLYHDHNIDHLVIPTRDYLFAPSFADICQAVD 139 (323)
Q Consensus 66 ~~I~~~LylG~~p~a~d~~~Lk~~GI~~VInL~~~~e~~~~~------~~~~~~gi~yl~iP~~D~~~~p~~~~l~~a~~ 139 (323)
.+|.+.+.+++++...|+..++.+|+++|||.....|.+..+ ...+..|+.|.++|+... ......++.+.+
T Consensus 4 ~~I~d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~--~iT~~dV~~f~~ 81 (130)
T COG3453 4 RRINDRLSVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGG--GITEADVEAFQR 81 (130)
T ss_pred eecccceeecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCC--CCCHHHHHHHHH
Confidence 468999999999999999999999999999998877654332 345678999999999864 455666666666
Q ss_pred HHHHHhcCCCeEEEEcCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHH
Q 020662 140 FIHENASLGKTTYVHCKAGRGRSTTIVLCYLVEHRQMAPEAAYEYVRS 187 (323)
Q Consensus 140 ~I~~~~~~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~s~~~A~~~vr~ 187 (323)
.|+++ ++|||.||+.| .||.++=..-. ...||+.+++..+=+.
T Consensus 82 Al~ea---egPVlayCrsG-tRs~~ly~~~~-~~~gm~~de~~a~g~a 124 (130)
T COG3453 82 ALDEA---EGPVLAYCRSG-TRSLNLYGLGE-LDGGMSRDEIEALGQA 124 (130)
T ss_pred HHHHh---CCCEEeeecCC-chHHHHHHHHH-HhcCCCHHHHHHHHHh
Confidence 66643 59999999999 48877633333 3578998888766543
No 25
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=99.06 E-value=5.6e-10 Score=110.28 Aligned_cols=137 Identities=22% Similarity=0.252 Sum_probs=105.6
Q ss_pred ceecCcEEEcCCCCccC-------HH----HHHh--cCccEEEEcCCCCCccCCccccccCCcEEEEEeCCCCCCCCcHH
Q 020662 66 DRVDQFIILGAVPFPAD-------VL----RLKE--LGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTRDYLFAPSFA 132 (323)
Q Consensus 66 ~~I~~~LylG~~p~a~d-------~~----~Lk~--~GI~~VInL~~~~e~~~~~~~~~~~gi~yl~iP~~D~~~~p~~~ 132 (323)
+=|++.|..-++|.... ++ +|.. .|=-.|-||+.+ ..++...+.. ....+++.|+ .+|.++
T Consensus 16 tYIT~rIIamsfPa~~~es~yRN~l~dV~~fL~s~H~~~y~vyNL~~e--r~yd~~~f~g---~V~~~~~~Dh-~~P~L~ 89 (434)
T KOG2283|consen 16 TYITSRIIAMSFPAEGIESLYRNNLEDVVLFLDSKHKDHYKVYNLSSE--RLYDPSRFHG---RVARFGFDDH-NPPPLE 89 (434)
T ss_pred eeeeeeEEEEeCCCCcchhhhcCCHHHHHHHHhhccCCceEEEecCcc--ccCCcccccc---ceeecCCCCC-CCCcHH
Confidence 45888888888887532 21 2221 233458899863 3444443332 4556899998 499999
Q ss_pred HHHHHHHHHHHHhcC--CCeEEEEcCCCCCchHHHHHHHHHHhcCC-CHHHHHHHHHHhC---C--CCCCCHHHHHHHHH
Q 020662 133 DICQAVDFIHENASL--GKTTYVHCKAGRGRSTTIVLCYLVEHRQM-APEAAYEYVRSIR---P--RVLLASSQWQAVQD 204 (323)
Q Consensus 133 ~l~~a~~~I~~~~~~--g~~VLVHC~~G~gRSgtvv~aYLm~~~g~-s~~~A~~~vr~~R---p--~i~~~~~q~~~L~~ 204 (323)
.+..+++-++.++.. ...|.|||++|.+|||+|++||||+.... ++++|+.++-.+| . .....+.|.++++.
T Consensus 90 ~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~~~~~~~~~PSq~RYv~Y 169 (434)
T KOG2283|consen 90 LLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDEGKSKGVTIPSQRRYVGY 169 (434)
T ss_pred HHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhccccccCCccCchhhHHHHH
Confidence 999999999999876 46799999999999999999999985555 6999999999999 4 46788999999999
Q ss_pred HHHH
Q 020662 205 YYLQ 208 (323)
Q Consensus 205 ~~~~ 208 (323)
|..+
T Consensus 170 ~~~~ 173 (434)
T KOG2283|consen 170 FSRV 173 (434)
T ss_pred HHHH
Confidence 9975
No 26
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=99.01 E-value=2.3e-09 Score=106.45 Aligned_cols=93 Identities=20% Similarity=0.254 Sum_probs=72.3
Q ss_pred cEEEEEe-CCCCCCCCcHHHHHHHHHHHHHHhcCC---------CeEEEEcCCCCCchHHHHHHHHHHhcC-CCHHHHHH
Q 020662 115 IDHLVIP-TRDYLFAPSFADICQAVDFIHENASLG---------KTTYVHCKAGRGRSTTIVLCYLVEHRQ-MAPEAAYE 183 (323)
Q Consensus 115 i~yl~iP-~~D~~~~p~~~~l~~a~~~I~~~~~~g---------~~VLVHC~~G~gRSgtvv~aYLm~~~g-~s~~~A~~ 183 (323)
+.++|+. ++|+..++....+..+++.++.....+ ...+|||.+|+|||||++++|+|...+ .++++.+.
T Consensus 423 V~QFHyTnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~ 502 (535)
T PRK15375 423 IPVLHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRA 502 (535)
T ss_pred EEEEEeCCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHhccccCCHHHHHH
Confidence 3444444 567765566666777777776653211 224799999999999999999997555 49999999
Q ss_pred HHHHhCCC-CCCCHHHHHHHHHHHH
Q 020662 184 YVRSIRPR-VLLASSQWQAVQDYYL 207 (323)
Q Consensus 184 ~vr~~Rp~-i~~~~~q~~~L~~~~~ 207 (323)
-+|..|++ ++.+++|+.+|.+.+.
T Consensus 503 dlR~qRng~MVQt~eQy~~l~~~~~ 527 (535)
T PRK15375 503 DFRNSRNNRMLEDASQFVQLKAMQA 527 (535)
T ss_pred HHHhcCCccccccHHHHHHHHHHHH
Confidence 99999998 9999999999998883
No 27
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=98.97 E-value=1.5e-09 Score=93.99 Aligned_cols=111 Identities=16% Similarity=0.164 Sum_probs=61.6
Q ss_pred cCc-EEEcCCCC---ccCHHHHHhcCccEEEEcCCCCCccCCccccccCCcEEEEEeCCCCCCCC---c-----------
Q 020662 69 DQF-IILGAVPF---PADVLRLKELGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTRDYLFAP---S----------- 130 (323)
Q Consensus 69 ~~~-LylG~~p~---a~d~~~Lk~~GI~~VInL~~~~e~~~~~~~~~~~gi~yl~iP~~D~~~~p---~----------- 130 (323)
-++ ||.++.+. ..+...|.++||++||||..+.|....+.. ...|++++++|+.+..... .
T Consensus 17 r~g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~-~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 95 (164)
T PF13350_consen 17 RPGRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDP-LIDGVQYVHIPIFGDDASSPDKLAELLQSSADAP 95 (164)
T ss_dssp -TTSEEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS-----TT-EEEE--SS-S-TTH----------HHHHH
T ss_pred cCCcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCC-CcCCceeeeecccccccccccccccccccccchh
Confidence 444 99999886 467788999999999999988664222211 1248999999987653220 0
Q ss_pred --------------HHHHHHHHHHHHHHhcCCCeEEEEcCCCCCchHHHHHHHHHHhcCCCHHHHHHH
Q 020662 131 --------------FADICQAVDFIHENASLGKTTYVHCKAGRGRSTTIVLCYLVEHRQMAPEAAYEY 184 (323)
Q Consensus 131 --------------~~~l~~a~~~I~~~~~~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~s~~~A~~~ 184 (323)
.+.+.++++.|. ...++||+||.+|..|||.+++..|. -.|.+.++.++-
T Consensus 96 ~~~~~~Y~~~~~~~~~~~~~~~~~l~---~~~~p~l~HC~aGKDRTG~~~alll~-~lGV~~~~I~~D 159 (164)
T PF13350_consen 96 RGMLEFYREMLESYAEAYRKIFELLA---DAPGPVLFHCTAGKDRTGVVAALLLS-LLGVPDEDIIAD 159 (164)
T ss_dssp HHHHHHHHHGGGSTHHHHHHHHHHHH----TT--EEEE-SSSSSHHHHHHHHHHH-HTT--HHHHHHH
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHhc---cCCCcEEEECCCCCccHHHHHHHHHH-HcCCCHHHHHHH
Confidence 122222222222 23479999999999999999888766 489988887654
No 28
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=98.88 E-value=3.3e-09 Score=102.78 Aligned_cols=136 Identities=16% Similarity=0.153 Sum_probs=109.2
Q ss_pred CcEEEcC-CCCcc-CHHHHHh--cCccEEEEcCCCCCccCCccccccCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHh
Q 020662 70 QFIILGA-VPFPA-DVLRLKE--LGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTRDYLFAPSFADICQAVDFIHENA 145 (323)
Q Consensus 70 ~~LylG~-~p~a~-d~~~Lk~--~GI~~VInL~~~~e~~~~~~~~~~~gi~yl~iP~~D~~~~p~~~~l~~a~~~I~~~~ 145 (323)
+.++-|+ ...+. .+..|+. .-+.-+|||+.... .++......+|+.|+.+.+..+...|.......++..+++..
T Consensus 39 ~k~~~~~~~f~~~dl~~~l~~~~~~vgl~iDltnt~r-yy~~~~~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~ 117 (393)
T KOG2386|consen 39 TKTFPGSQRFQPKDLFELLKEHNYKVGLKIDLTNTLR-YYDKPELEERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFV 117 (393)
T ss_pred cCCCCCccccCHHHHHHHHHhcCceEEEEEeccceee-eeccccccccceeEEEeccCCcccCCCccchHHHHHHHHHHH
Confidence 3444455 33333 3444544 56788999998754 456778889999999999998877777666666666655554
Q ss_pred c----CCCeEEEEcCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 020662 146 S----LGKTTYVHCKAGRGRSTTIVLCYLVEHRQMAPEAAYEYVRSIRPRVLLASSQWQAVQDYY 206 (323)
Q Consensus 146 ~----~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~s~~~A~~~vr~~Rp~i~~~~~q~~~L~~~~ 206 (323)
. .++-|+|||.+|++|+|.++++|||...+|+..+|++.+...||..+.....+..|...+
T Consensus 118 ~~~~~~~~LI~vhcthG~NrtgyLI~~yL~~~~~~s~~~aik~f~~~r~~gi~k~dyi~~L~~~~ 182 (393)
T KOG2386|consen 118 DDTKLDDELIGVHCTHGLNRTGYLICAYLADVGGYSSSEAIKRFADARPPGIEKQDYIDALYSRY 182 (393)
T ss_pred hcccCCCCEEEEeCCCcccccceeeeeeeeeccCccHHHHHHHHHHhCCCccCchHHHHHHhhcc
Confidence 4 478999999999999999999999999999999999999999999999999999999887
No 29
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=98.83 E-value=2.3e-08 Score=95.11 Aligned_cols=86 Identities=14% Similarity=0.031 Sum_probs=64.6
Q ss_pred eCCCCCCCCcHHHHHHHHHHHHHHhc------------CCCeEEEEcCCCCCchHHHHHHHHHH-----hcCCCHHHHHH
Q 020662 121 PTRDYLFAPSFADICQAVDFIHENAS------------LGKTTYVHCKAGRGRSTTIVLCYLVE-----HRQMAPEAAYE 183 (323)
Q Consensus 121 P~~D~~~~p~~~~l~~a~~~I~~~~~------------~g~~VLVHC~~G~gRSgtvv~aYLm~-----~~g~s~~~A~~ 183 (323)
.+.|+..+.....+-+++..+++... ..+||+|||.+|+||||++++...+. ....++.+++.
T Consensus 190 ~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~V~ 269 (303)
T PHA02742 190 DWPHGGLPRDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVR 269 (303)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 34566545556667666666654321 13799999999999999998876653 22458999999
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHH
Q 020662 184 YVRSIRPRVLLASSQWQAVQDYY 206 (323)
Q Consensus 184 ~vr~~Rp~i~~~~~q~~~L~~~~ 206 (323)
.+|.+|++++.+..|+.++..--
T Consensus 270 ~lR~qR~~~Vqt~~QY~F~y~~l 292 (303)
T PHA02742 270 DLRKQRHNCLSLPQQYIFCYFIV 292 (303)
T ss_pred HHHhhcccccCCHHHHHHHHHHH
Confidence 99999999999999999877543
No 30
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=98.82 E-value=3.2e-08 Score=93.95 Aligned_cols=84 Identities=10% Similarity=0.026 Sum_probs=63.1
Q ss_pred eCCCCCCCCcHHHHHHHHHHHHHHh---------cCCCeEEEEcCCCCCchHHHHHHHHHH-----hcCCCHHHHHHHHH
Q 020662 121 PTRDYLFAPSFADICQAVDFIHENA---------SLGKTTYVHCKAGRGRSTTIVLCYLVE-----HRQMAPEAAYEYVR 186 (323)
Q Consensus 121 P~~D~~~~p~~~~l~~a~~~I~~~~---------~~g~~VLVHC~~G~gRSgtvv~aYLm~-----~~g~s~~~A~~~vr 186 (323)
.+.|+..+.....|-+++..+++.. ...+||+|||.+|+||||++++...+. ....++.+++..+|
T Consensus 185 ~WPd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~V~~lR 264 (298)
T PHA02740 185 AWPADGFSHDPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANALKKVR 264 (298)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 3445554555666666655554321 124799999999999999998766553 33459999999999
Q ss_pred HhCCCCCCCHHHHHHHHH
Q 020662 187 SIRPRVLLASSQWQAVQD 204 (323)
Q Consensus 187 ~~Rp~i~~~~~q~~~L~~ 204 (323)
.+|++.+.+.+|+.++.+
T Consensus 265 ~qR~~~Vqt~~QY~F~y~ 282 (298)
T PHA02740 265 QKKYGCMNCLDDYVFCYH 282 (298)
T ss_pred hhCccccCCHHHHHHHHH
Confidence 999999999999998875
No 31
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=98.78 E-value=3.9e-08 Score=93.99 Aligned_cols=82 Identities=15% Similarity=0.186 Sum_probs=62.0
Q ss_pred eCCCCCCCCcHHHHHHHHHHHHHHhc-----------CCCeEEEEcCCCCCchHHHHHHHHHH-----hcCCCHHHHHHH
Q 020662 121 PTRDYLFAPSFADICQAVDFIHENAS-----------LGKTTYVHCKAGRGRSTTIVLCYLVE-----HRQMAPEAAYEY 184 (323)
Q Consensus 121 P~~D~~~~p~~~~l~~a~~~I~~~~~-----------~g~~VLVHC~~G~gRSgtvv~aYLm~-----~~g~s~~~A~~~ 184 (323)
.+.|+..+.....+.+++..++.... ..+||+|||.+|+||||++++...+. ....++.+++..
T Consensus 191 ~Wpd~~~P~~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~ 270 (312)
T PHA02747 191 EWFEDETPSDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEK 270 (312)
T ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 34555444455666666665554321 12699999999999999999876542 345699999999
Q ss_pred HHHhCCCCCCCHHHHHHH
Q 020662 185 VRSIRPRVLLASSQWQAV 202 (323)
Q Consensus 185 vr~~Rp~i~~~~~q~~~L 202 (323)
+|.+|++++.+..|+.++
T Consensus 271 lR~qR~~~Vqt~~QY~F~ 288 (312)
T PHA02747 271 IREQRHAGIMNFDDYLFI 288 (312)
T ss_pred HHhccccccCCHHHHHHH
Confidence 999999999999999999
No 32
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=98.78 E-value=4.7e-08 Score=87.98 Aligned_cols=85 Identities=18% Similarity=0.193 Sum_probs=67.6
Q ss_pred eCCCCCCCCcHHHHHHHHHHHHHHh-cCCCeEEEEcCCCCCchHHHHHHHHHHh-----cCCCHHHHHHHHHHhCCCCCC
Q 020662 121 PTRDYLFAPSFADICQAVDFIHENA-SLGKTTYVHCKAGRGRSTTIVLCYLVEH-----RQMAPEAAYEYVRSIRPRVLL 194 (323)
Q Consensus 121 P~~D~~~~p~~~~l~~a~~~I~~~~-~~g~~VLVHC~~G~gRSgtvv~aYLm~~-----~g~s~~~A~~~vr~~Rp~i~~ 194 (323)
.+.+...++....+-.+++.+.+.. ..+++++|||.+|.||||+++++.++.. ...++.+++..+|..||+++.
T Consensus 142 ~W~~~~~P~~~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~i~ 221 (235)
T PF00102_consen 142 NWPDDGVPPSPESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRPGAIQ 221 (235)
T ss_dssp SSSSSSSGSSSHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTTSSS
T ss_pred eccccccccccchhhhhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhCCCccC
Confidence 3445443445666777777777666 3368999999999999999999988742 346999999999999999999
Q ss_pred CHHHHHHHHHH
Q 020662 195 ASSQWQAVQDY 205 (323)
Q Consensus 195 ~~~q~~~L~~~ 205 (323)
+..|+.++...
T Consensus 222 ~~~qy~f~~~~ 232 (235)
T PF00102_consen 222 SPEQYRFCYMA 232 (235)
T ss_dssp SHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99999998764
No 33
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=98.76 E-value=5.1e-08 Score=93.61 Aligned_cols=84 Identities=17% Similarity=0.179 Sum_probs=63.5
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHhc--------C---CCeEEEEcCCCCCchHHHHHHHHHH-----hcCCCHHHHHHHH
Q 020662 122 TRDYLFAPSFADICQAVDFIHENAS--------L---GKTTYVHCKAGRGRSTTIVLCYLVE-----HRQMAPEAAYEYV 185 (323)
Q Consensus 122 ~~D~~~~p~~~~l~~a~~~I~~~~~--------~---g~~VLVHC~~G~gRSgtvv~aYLm~-----~~g~s~~~A~~~v 185 (323)
+.|...+.....+-+++..+++... . .+||+|||.+|+||||++|+...+. ....++.+++..+
T Consensus 210 Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~~V~~l 289 (323)
T PHA02746 210 WPDNGIPTGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGEIVLKI 289 (323)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4555544455666666666654321 1 2799999999999999999865542 2346999999999
Q ss_pred HHhCCCCCCCHHHHHHHHHH
Q 020662 186 RSIRPRVLLASSQWQAVQDY 205 (323)
Q Consensus 186 r~~Rp~i~~~~~q~~~L~~~ 205 (323)
|.+|++++.+..|+.++.+-
T Consensus 290 R~qR~~~Vqt~~QY~F~y~~ 309 (323)
T PHA02746 290 RKQRHSSVFLPEQYAFCYKA 309 (323)
T ss_pred HhcccccCCCHHHHHHHHHH
Confidence 99999999999999998754
No 34
>PHA02738 hypothetical protein; Provisional
Probab=98.70 E-value=9.2e-08 Score=91.70 Aligned_cols=84 Identities=15% Similarity=0.121 Sum_probs=62.7
Q ss_pred eCCCCCCCCcHHHHHHHHHHHHHHhc--------------CCCeEEEEcCCCCCchHHHHHHHHHH-----hcCCCHHHH
Q 020662 121 PTRDYLFAPSFADICQAVDFIHENAS--------------LGKTTYVHCKAGRGRSTTIVLCYLVE-----HRQMAPEAA 181 (323)
Q Consensus 121 P~~D~~~~p~~~~l~~a~~~I~~~~~--------------~g~~VLVHC~~G~gRSgtvv~aYLm~-----~~g~s~~~A 181 (323)
.+.|...+.....|-+++..+++... ..+||+|||.+|+||||++++...+. ....++.++
T Consensus 186 ~Wpd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~~ 265 (320)
T PHA02738 186 AWPDHDVPKNTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPSI 265 (320)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHHH
Confidence 35565545556666666666654321 13699999999999999988765542 234599999
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHH
Q 020662 182 YEYVRSIRPRVLLASSQWQAVQD 204 (323)
Q Consensus 182 ~~~vr~~Rp~i~~~~~q~~~L~~ 204 (323)
+..+|.+|++.+.+..|+.++.+
T Consensus 266 V~~lR~qR~~~vqt~~QY~F~y~ 288 (320)
T PHA02738 266 VSSIRNQRYYSLFIPFQYFFCYR 288 (320)
T ss_pred HHHHHhhhhhccCCHHHHHHHHH
Confidence 99999999999999999988765
No 35
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=98.70 E-value=4.6e-08 Score=95.02 Aligned_cols=120 Identities=18% Similarity=0.214 Sum_probs=76.3
Q ss_pred HHHHhcCccEEEEcCCCCCccCC------ccccc----cCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHh---cCCCe
Q 020662 84 LRLKELGVSGVVTLNESYETLVP------TSLYH----DHNIDHLVIPTRDYLFAPSFADICQAVDFIHENA---SLGKT 150 (323)
Q Consensus 84 ~~Lk~~GI~~VInL~~~~e~~~~------~~~~~----~~gi~yl~iP~~D~~~~p~~~~l~~a~~~I~~~~---~~g~~ 150 (323)
..++.+|+-.|=|+.+..-..+. ...+. ..=++|+..-+.|+..+..+--+..+++-++.-. ..-++
T Consensus 374 ~~~e~~G~~~v~~v~E~~t~dY~LR~l~vs~~~~g~~~R~I~~yh~~tWPDHGvP~dPg~vLnFLe~V~~rq~~l~~Agp 453 (600)
T KOG0790|consen 374 GALEEYGVMRVRNVKESDTHDYTLRELKVSKLGNGNLEREIWHYHYLTWPDHGVPSDPGGVLNFLEEVNHRQESLMDAGP 453 (600)
T ss_pred cchhhcCceEEEeccccccccceehheeeccccCCcchhhhhhhheeecccCCCcCCccHHHHHHHHhhhhhccccccCc
Confidence 35567788888777653221111 00111 1113455555556654544444444444444332 22479
Q ss_pred EEEEcCCCCCchHHHHHHHHH----HhcC----CCHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 020662 151 TYVHCKAGRGRSTTIVLCYLV----EHRQ----MAPEAAYEYVRSIRPRVLLASSQWQAVQ 203 (323)
Q Consensus 151 VLVHC~~G~gRSgtvv~aYLm----~~~g----~s~~~A~~~vr~~Rp~i~~~~~q~~~L~ 203 (323)
|.|||.+|+|||||++..=++ +..| +++...++.||+.|.+.+.++.|+++++
T Consensus 454 IvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsqRSGmVQTEaQYkFiY 514 (600)
T KOG0790|consen 454 IVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQRSGMVQTEAQYKFIY 514 (600)
T ss_pred EEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHHhcchhhhHHhHHHHH
Confidence 999999999999997644332 3344 4899999999999999999999999886
No 36
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=98.67 E-value=4.8e-08 Score=103.02 Aligned_cols=90 Identities=20% Similarity=0.259 Sum_probs=72.3
Q ss_pred cEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhcC-CCeEEEEcCCCCCchHHHHHH----HHHH-hcCCCHHHHHHHHHHh
Q 020662 115 IDHLVIPTRDYLFAPSFADICQAVDFIHENASL-GKTTYVHCKAGRGRSTTIVLC----YLVE-HRQMAPEAAYEYVRSI 188 (323)
Q Consensus 115 i~yl~iP~~D~~~~p~~~~l~~a~~~I~~~~~~-g~~VLVHC~~G~gRSgtvv~a----YLm~-~~g~s~~~A~~~vr~~ 188 (323)
++|..+| |+..+.....|-++++.|+..+.. +-||+|||.+|+||||+++++ ||+. ..-+.+-+.+..+|.+
T Consensus 1031 LQYtaWP--DHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~Q 1108 (1144)
T KOG0792|consen 1031 LQYTAWP--DHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQ 1108 (1144)
T ss_pred eeecccc--cCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 4454455 555677888888888888877766 669999999999999998854 4443 2345899999999999
Q ss_pred CCCCCCCHHHHHHHHHHH
Q 020662 189 RPRVLLASSQWQAVQDYY 206 (323)
Q Consensus 189 Rp~i~~~~~q~~~L~~~~ 206 (323)
|-.++++.+|+.|+.+--
T Consensus 1109 R~~mVQT~~QYkFVyevi 1126 (1144)
T KOG0792|consen 1109 RAMMVQTLSQYKFVYEVI 1126 (1144)
T ss_pred HhhhccchHHhhHHHHHH
Confidence 999999999999987654
No 37
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=98.58 E-value=4.4e-07 Score=76.91 Aligned_cols=122 Identities=21% Similarity=0.238 Sum_probs=85.1
Q ss_pred CCCccCHHHHHhcCccEEEEcCCCCCcc-CCccccccCCcEEEEEeCCC-----CC-CCCcHHHHHHHHHHHHHHhcCCC
Q 020662 77 VPFPADVLRLKELGVSGVVTLNESYETL-VPTSLYHDHNIDHLVIPTRD-----YL-FAPSFADICQAVDFIHENASLGK 149 (323)
Q Consensus 77 ~p~a~d~~~Lk~~GI~~VInL~~~~e~~-~~~~~~~~~gi~yl~iP~~D-----~~-~~p~~~~l~~a~~~I~~~~~~g~ 149 (323)
.|...-.+...+.|-+++|++....... .+..... -.|+.+-+.| .. ..|...++...++|++++-.. .
T Consensus 19 ~Pl~~~ae~~~rh~~t~mlsl~a~~t~~~~pa~~~~---erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~-a 94 (172)
T COG5350 19 SPLSVIAETAARHGPTHMLSLLAKGTYFHRPAVIAA---ERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRF-A 94 (172)
T ss_pred chHHHHHHHHhhcCCceEEEeecccccccCccccch---hhceeEeeccccCCCccccCCCHHHHHHHHHHHhcCccc-c
Confidence 3444444555678999999998763321 1111111 1233433333 22 467789999999999988654 8
Q ss_pred eEEEEcCCCCCchHHHHHH-HHHHhcCCCHHHHHHHHHHhCCCCCCCHHHHHHH
Q 020662 150 TTYVHCKAGRGRSTTIVLC-YLVEHRQMAPEAAYEYVRSIRPRVLLASSQWQAV 202 (323)
Q Consensus 150 ~VLVHC~~G~gRSgtvv~a-YLm~~~g~s~~~A~~~vr~~Rp~i~~~~~q~~~L 202 (323)
++||||.+|+|||.+++.. -|.-...++..+..+.+|..+|.+.||+..+..-
T Consensus 95 pllIHC~aGISRStA~A~i~a~ala~~~de~ela~~Lra~sp~atPN~RliaI~ 148 (172)
T COG5350 95 PLLIHCYAGISRSTAAALIAALALAPDMDETELAERLRALSPYATPNPRLIAIA 148 (172)
T ss_pred ceeeeeccccccchHHHHHHHHhhccccChHHHHHHHHhcCcccCCChhHHHHH
Confidence 9999999999999886533 3334578999999999999999999999766543
No 38
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=98.55 E-value=1.1e-07 Score=81.49 Aligned_cols=64 Identities=30% Similarity=0.451 Sum_probs=49.1
Q ss_pred ccccccCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEcCCCCCchHHHHHHHHHH
Q 020662 107 TSLYHDHNIDHLVIPTRDYLFAPSFADICQAVDFIHENASLGKTTYVHCKAGRGRSTTIVLCYLVE 172 (323)
Q Consensus 107 ~~~~~~~gi~yl~iP~~D~~~~p~~~~l~~a~~~I~~~~~~g~~VLVHC~~G~gRSgtvv~aYLm~ 172 (323)
....+..|+.|+++|+.|.. .|..+.|+++++++... ..+..+.+||.+|.|||+|..+.|.|.
T Consensus 85 ~~~~~~~g~~Y~Ripitd~~-~P~~~~iD~fi~~v~~~-p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 85 EELVEGNGLRYYRIPITDHQ-APDPEDIDAFINFVKSL-PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HHHHHHTT-EEEEEEE-TTS----HHHHHHHHHHHHTS--TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred HHHHhcCCceEEEEeCCCcC-CCCHHHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34566789999999999984 99999999999999988 667899999999999999988887764
No 39
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=98.53 E-value=2e-07 Score=86.36 Aligned_cols=128 Identities=13% Similarity=0.133 Sum_probs=81.6
Q ss_pred ceecCcEEEcCCCCccCHH--HHHhcCccEEEEcCCCCC--c-cCCccc---cccCCcEEEEEeCCCCCCCCcHHHHHHH
Q 020662 66 DRVDQFIILGAVPFPADVL--RLKELGVSGVVTLNESYE--T-LVPTSL---YHDHNIDHLVIPTRDYLFAPSFADICQA 137 (323)
Q Consensus 66 ~~I~~~LylG~~p~a~d~~--~Lk~~GI~~VInL~~~~e--~-~~~~~~---~~~~gi~yl~iP~~D~~~~p~~~~l~~a 137 (323)
..+....|+++.|.+.+.. .....++..+|++..+.. . .+.... ....++....++.... .....+.+...
T Consensus 49 ~i~~~~~~Rs~~p~~~~~~~~~~~~~~l~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~ 127 (249)
T COG2365 49 GIIPIIDYRSGQPVPVQPDPELLDALYLKTIINLRDESNTNVELYTDHLINWDKAAIIMFESYRSFPT-REDAAERLVEL 127 (249)
T ss_pred cccceeEcCCCCcccccCCccccccccccccccccccchhhhhhhhhhhhhhccccchhhhhhccCcc-chhhHHHHHHH
Confidence 3344558999999988776 677899999999987211 1 111111 1122232223332221 13334455554
Q ss_pred HHHHHHHhcCCCeEEEEcCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCCH
Q 020662 138 VDFIHENASLGKTTYVHCKAGRGRSTTIVLCYLVEHRQMAPEAAYEYVRSIRPRVLLAS 196 (323)
Q Consensus 138 ~~~I~~~~~~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~s~~~A~~~vr~~Rp~i~~~~ 196 (323)
+.++.... ++|||+||.+|..|||.++++|+....+..-..+-+++...+++.....
T Consensus 128 ~~l~~~~e--~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~~ 184 (249)
T COG2365 128 LQLLADAE--NGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERR 184 (249)
T ss_pred HHHHhhcc--cCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhhH
Confidence 44443221 3999999999999999999999998666666677788888887655544
No 40
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.53 E-value=1.8e-07 Score=85.76 Aligned_cols=98 Identities=19% Similarity=0.272 Sum_probs=64.8
Q ss_pred cEEEEEe-CCCCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEcCCCCCchHHHHHHHHHHhcCC--------------CHH
Q 020662 115 IDHLVIP-TRDYLFAPSFADICQAVDFIHENASLGKTTYVHCKAGRGRSTTIVLCYLVEHRQM--------------APE 179 (323)
Q Consensus 115 i~yl~iP-~~D~~~~p~~~~l~~a~~~I~~~~~~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~--------------s~~ 179 (323)
|+|+.++ +.|.. .|....+.+...-+...--.+++++|||.||.|||||+++.-.+...-- ...
T Consensus 185 Ihhf~y~nW~D~~-~p~i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~D~if 263 (302)
T COG5599 185 IHHFQYINWVDFN-VPDIRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQDLIF 263 (302)
T ss_pred EEEEEecCccccC-CcCHHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhhhHHH
Confidence 4455444 45653 5544444444444443312469999999999999999988765543211 134
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhhhc
Q 020662 180 AAYEYVRSIRPRVLLASSQWQAVQDYYLQKVKKI 213 (323)
Q Consensus 180 ~A~~~vr~~Rp~i~~~~~q~~~L~~~~~~~~~~~ 213 (323)
+.+..+|++|..++.|..|..+|+.-.....+++
T Consensus 264 ~iV~~LRsQRmkmVQn~~Qf~flY~~~~~l~~~q 297 (302)
T COG5599 264 QIVLSLRSQRMKMVQNKTQFKFLYDAFLELNKSQ 297 (302)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 5667789999999999999999987664333433
No 41
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=98.08 E-value=1.7e-05 Score=76.03 Aligned_cols=91 Identities=20% Similarity=0.224 Sum_probs=67.6
Q ss_pred EEEeCCCCCCCCcHHHHHHHHHHHHHHhcC-CCeEEEEcCCCCCchHHHHHHHHHHhc-----CCCHHHHHHHHHHhCCC
Q 020662 118 LVIPTRDYLFAPSFADICQAVDFIHENASL-GKTTYVHCKAGRGRSTTIVLCYLVEHR-----QMAPEAAYEYVRSIRPR 191 (323)
Q Consensus 118 l~iP~~D~~~~p~~~~l~~a~~~I~~~~~~-g~~VLVHC~~G~gRSgtvv~aYLm~~~-----g~s~~~A~~~vr~~Rp~ 191 (323)
+..-+.|+..+.....+.+++..+.+.... .++++|||.+|+|||||+++.--+..+ -.+.-..+..+|+.|+.
T Consensus 256 ~y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~~R~~ 335 (374)
T KOG0791|consen 256 HYTAWPDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRSARML 335 (374)
T ss_pred EEeeccccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhhcccc
Confidence 334455655344456666666666666654 579999999999999999887655421 23677788888999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 020662 192 VLLASSQWQAVQDYYLQ 208 (323)
Q Consensus 192 i~~~~~q~~~L~~~~~~ 208 (323)
++++..|+-+|++--..
T Consensus 336 mVqte~Qyvfl~~c~~~ 352 (374)
T KOG0791|consen 336 MVQTEDQYVFLHQCVLE 352 (374)
T ss_pred ccchHHHHHHHHHHHHH
Confidence 99999999999976633
No 42
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.03 E-value=2.4e-05 Score=76.85 Aligned_cols=60 Identities=23% Similarity=0.284 Sum_probs=48.3
Q ss_pred CCCeEEEEcCCCCCchHHHHHHHHH-Hh--c---CCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 020662 147 LGKTTYVHCKAGRGRSTTIVLCYLV-EH--R---QMAPEAAYEYVRSIRPRVLLASSQWQAVQDYY 206 (323)
Q Consensus 147 ~g~~VLVHC~~G~gRSgtvv~aYLm-~~--~---g~s~~~A~~~vr~~Rp~i~~~~~q~~~L~~~~ 206 (323)
..+|+.|||.+|.|||||+++...+ .. . ..+..+.+..+|.+|++++.+..|+.+++.-.
T Consensus 298 ~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~qR~~~vqt~~Qy~f~~~~~ 363 (415)
T KOG0789|consen 298 KQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRYQRPGAVQSPLQYLFIYAAT 363 (415)
T ss_pred CCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccchhHHHHHHHHH
Confidence 3589999999999999999975522 21 2 23588889999999999999999998887554
No 43
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.86 E-value=7.6e-05 Score=76.41 Aligned_cols=89 Identities=21% Similarity=0.279 Sum_probs=66.0
Q ss_pred cEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhc-CCCeEEEEcCCCCCchHHHHHHHHHH------hcCCCHHHHHHHHHH
Q 020662 115 IDHLVIPTRDYLFAPSFADICQAVDFIHENAS-LGKTTYVHCKAGRGRSTTIVLCYLVE------HRQMAPEAAYEYVRS 187 (323)
Q Consensus 115 i~yl~iP~~D~~~~p~~~~l~~a~~~I~~~~~-~g~~VLVHC~~G~gRSgtvv~aYLm~------~~g~s~~~A~~~vr~ 187 (323)
++|+.+| +...+.+...+-++-+.++++.. +..+|+|||..|-||||+-|+.=++- .+.+++...++++|.
T Consensus 895 FHfLSWp--~egvPasarslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRD 972 (1004)
T KOG0793|consen 895 FHFLSWP--DEGVPASARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRD 972 (1004)
T ss_pred eeeeccc--ccCCccchHHHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhh
Confidence 3444444 43446667777777777887764 35799999999999999965443332 123488888999999
Q ss_pred hCCCCCCCHHHHHHHHHH
Q 020662 188 IRPRVLLASSQWQAVQDY 205 (323)
Q Consensus 188 ~Rp~i~~~~~q~~~L~~~ 205 (323)
+||+++-+.+|.+++..-
T Consensus 973 QR~GmVaTkdQFef~l~a 990 (1004)
T KOG0793|consen 973 QRPGMVATKDQFEFALTA 990 (1004)
T ss_pred cCCcceeehhhhHHHHHH
Confidence 999999999999887644
No 44
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=97.80 E-value=0.00036 Score=69.77 Aligned_cols=134 Identities=18% Similarity=0.175 Sum_probs=97.8
Q ss_pred ecCcEEEcCCCCccCH----HHHHhcCccEEEEcCCCCCccCCccccccCCcEEEEEeCCCCCC--CCcHHHHHHHHHHH
Q 020662 68 VDQFIILGAVPFPADV----LRLKELGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTRDYLF--APSFADICQAVDFI 141 (323)
Q Consensus 68 I~~~LylG~~p~a~d~----~~Lk~~GI~~VInL~~~~e~~~~~~~~~~~gi~yl~iP~~D~~~--~p~~~~l~~a~~~I 141 (323)
++.+||+|.....-.. ..-....+..||++....... .-......|+++|+...-. ..+...+.+++.|+
T Consensus 292 ~~~~i~ig~~~~~l~~~~~~~~~~~~~~~~vI~~s~~~~~~----~~~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv 367 (451)
T PF04179_consen 292 GTTGIYIGKISSNLAISKAQLPDLESEFDCVINCSESPTPK----ESWPKSPKYLHLPIPSSKKGSRDLRKALPKICSFV 367 (451)
T ss_pred CCCCeEEeccCCccccchhhccccCCCcCEEEEcCCCcccc----cccCCCceEEeCcCCCCcccHHHHHHHHHHHHHHH
Confidence 4669999998762211 111346788999998764211 1112456889999876421 13468889999999
Q ss_pred HHHhcC--CCeEEEEcCCCCCchHHHHHHHHHHhcCC----------------CHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 020662 142 HENASL--GKTTYVHCKAGRGRSTTIVLCYLVEHRQM----------------APEAAYEYVRSIRPRVLLASSQWQAVQ 203 (323)
Q Consensus 142 ~~~~~~--g~~VLVHC~~G~gRSgtvv~aYLm~~~g~----------------s~~~A~~~vr~~Rp~i~~~~~q~~~L~ 203 (323)
...+.. +++|+|+|..|...|..++.|.|+..+.. ...+-+.++-+.+|.+.|+...++.+.
T Consensus 368 ~~~L~~~~~~~iLV~C~sGkDlSVgVaLaILc~~Fd~~g~~~~~~~~~~itK~~IR~rL~~I~~~~p~aNPSRaTLqsVN 447 (451)
T PF04179_consen 368 RSHLSSDPGKPILVCCDSGKDLSVGVALAILCKLFDDDGNFRDSFERPSITKDDIRQRLAWIISSRPDANPSRATLQSVN 447 (451)
T ss_pred HHHhcccCCCcEEEEcCCcchHHHHHHHHHHHHhcCcccCcccccccCCCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 999887 89999999999999999999999875432 245566777788888999998888887
Q ss_pred HH
Q 020662 204 DY 205 (323)
Q Consensus 204 ~~ 205 (323)
.|
T Consensus 448 sF 449 (451)
T PF04179_consen 448 SF 449 (451)
T ss_pred Hh
Confidence 76
No 45
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.30 E-value=0.00036 Score=75.04 Aligned_cols=69 Identities=16% Similarity=0.253 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhcC----CCeEEEEcCCCCCchHHHHHHHH-----HHhcCCCHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 020662 135 CQAVDFIHENASL----GKTTYVHCKAGRGRSTTIVLCYL-----VEHRQMAPEAAYEYVRSIRPRVLLASSQWQAVQ 203 (323)
Q Consensus 135 ~~a~~~I~~~~~~----g~~VLVHC~~G~gRSgtvv~aYL-----m~~~g~s~~~A~~~vr~~Rp~i~~~~~q~~~L~ 203 (323)
...+.|+.+...- .++++|||.+|.||||+.++.=- +.....+.-.-+..+|.+|+..+.+.+|+-++.
T Consensus 713 t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~QR~~mVQt~eQYiFi~ 790 (1087)
T KOG4228|consen 713 TGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQRNNMVQTEEQYIFIH 790 (1087)
T ss_pred hHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHHhccccccccHHHHHHHH
Confidence 3444555554432 39999999999999999764322 233445888888899999999999999988764
No 46
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.16 E-value=0.00066 Score=73.03 Aligned_cols=58 Identities=24% Similarity=0.323 Sum_probs=49.5
Q ss_pred CCeEEEEcCCCCCchHHHHHHHHH----HhcC-CCHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 020662 148 GKTTYVHCKAGRGRSTTIVLCYLV----EHRQ-MAPEAAYEYVRSIRPRVLLASSQWQAVQDY 205 (323)
Q Consensus 148 g~~VLVHC~~G~gRSgtvv~aYLm----~~~g-~s~~~A~~~vr~~Rp~i~~~~~q~~~L~~~ 205 (323)
.+++.|||.+|.||||+++++-++ +..| ++.-.+.+-+|..||+++-+.+|++++++-
T Consensus 1018 ~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~~rp~mv~t~~QY~fcYdv 1080 (1087)
T KOG4228|consen 1018 DGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRFQRPGMVDTSDQYQFCYDV 1080 (1087)
T ss_pred CCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhhcCccccCcHHHHHHHHHH
Confidence 589999999999999998876544 3334 489999999999999999999999998754
No 47
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=95.66 E-value=0.025 Score=47.97 Aligned_cols=66 Identities=21% Similarity=0.289 Sum_probs=44.6
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHhcC---CCeEEEEcCCCCCc----hHHHHHHHHHHhcCCCHHHHHHHHHHhC
Q 020662 123 RDYLFAPSFADICQAVDFIHENASL---GKTTYVHCKAGRGR----STTIVLCYLVEHRQMAPEAAYEYVRSIR 189 (323)
Q Consensus 123 ~D~~~~p~~~~l~~a~~~I~~~~~~---g~~VLVHC~~G~gR----Sgtvv~aYLm~~~g~s~~~A~~~vr~~R 189 (323)
.|.+ +..+.++-+++..+++.++. .++.+|||...-.+ ++.+++||+|...|||+++|++-+...-
T Consensus 39 ~DFG-PlnL~~lyrfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~~ 111 (141)
T PF14671_consen 39 ADFG-PLNLAQLYRFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASIQ 111 (141)
T ss_dssp S-------HHHHHHHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTTT
T ss_pred CcCC-CccHHHHHHHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcC
Confidence 3543 55678888888888888765 57888888876544 5779999999999999999999997664
No 48
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.78 E-value=0.28 Score=50.32 Aligned_cols=34 Identities=26% Similarity=0.431 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhcCCCeEEEEcCCCCCchHHHHHH
Q 020662 135 CQAVDFIHENASLGKTTYVHCKAGRGRSTTIVLC 168 (323)
Q Consensus 135 ~~a~~~I~~~~~~g~~VLVHC~~G~gRSgtvv~a 168 (323)
..++...++....+.+|||||..|..||+-+++.
T Consensus 361 aga~~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsL 394 (717)
T KOG4471|consen 361 AGAVRIADKVESESRSVLVHCSDGWDRTAQLVSL 394 (717)
T ss_pred HHHHHHHHHHhcCCceEEEEcCCCccchHHHHHH
Confidence 3344444444455789999999999999987753
No 49
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=89.52 E-value=2.1 Score=33.18 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=19.4
Q ss_pred cCCCeEEEEcCCCCCchHHHHHHHHHHhcCC
Q 020662 146 SLGKTTYVHCKAGRGRSTTIVLCYLVEHRQM 176 (323)
Q Consensus 146 ~~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~ 176 (323)
..+++|+|+|..| .||... +.+| +..|.
T Consensus 59 ~~~~~ivvyC~~G-~rs~~a-~~~L-~~~G~ 86 (101)
T cd01518 59 LKGKKVLMYCTGG-IRCEKA-SAYL-KERGF 86 (101)
T ss_pred cCCCEEEEECCCc-hhHHHH-HHHH-HHhCC
Confidence 4568999999998 588754 3344 44565
No 50
>PLN02160 thiosulfate sulfurtransferase
Probab=89.04 E-value=1 Score=37.71 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=20.3
Q ss_pred hcCCCeEEEEcCCCCCchHHHHHHHHHHhcCCC
Q 020662 145 ASLGKTTYVHCKAGRGRSTTIVLCYLVEHRQMA 177 (323)
Q Consensus 145 ~~~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~s 177 (323)
+..+++|++||..| .||...+.. +...|.+
T Consensus 78 ~~~~~~IivyC~sG-~RS~~Aa~~--L~~~G~~ 107 (136)
T PLN02160 78 LNPADDILVGCQSG-ARSLKATTE--LVAAGYK 107 (136)
T ss_pred cCCCCcEEEECCCc-HHHHHHHHH--HHHcCCC
Confidence 34578999999999 588766433 3445653
No 51
>PRK01415 hypothetical protein; Validated
Probab=84.13 E-value=2.1 Score=39.78 Aligned_cols=90 Identities=17% Similarity=0.155 Sum_probs=46.3
Q ss_pred cCcEEEcCCCCccCHHHHHhcCccEEEEcCCCCCccCCccccccCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHH--Hhc
Q 020662 69 DQFIILGAVPFPADVLRLKELGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTRDYLFAPSFADICQAVDFIHE--NAS 146 (323)
Q Consensus 69 ~~~LylG~~p~a~d~~~Lk~~GI~~VInL~~~~e~~~~~~~~~~~gi~yl~iP~~D~~~~p~~~~l~~a~~~I~~--~~~ 146 (323)
.|..-.|....+.++..+.+..=..|||++++.|... -+||-. . .+....+.++-.++.+ ...
T Consensus 105 ~~~~~~g~~i~p~e~~~ll~~~~~vvIDVRn~~E~~~------------Ghi~gA--i-nip~~~f~e~~~~~~~~~~~~ 169 (247)
T PRK01415 105 NVDLFKGEYIEPKDWDEFITKQDVIVIDTRNDYEVEV------------GTFKSA--I-NPNTKTFKQFPAWVQQNQELL 169 (247)
T ss_pred CccccCccccCHHHHHHHHhCCCcEEEECCCHHHHhc------------CCcCCC--C-CCChHHHhhhHHHHhhhhhhc
Confidence 3333345555555665554444456899988765211 122211 1 1222333333223321 124
Q ss_pred CCCeEEEEcCCCCCchHHHHHHHHHHhcCC
Q 020662 147 LGKTTYVHCKAGRGRSTTIVLCYLVEHRQM 176 (323)
Q Consensus 147 ~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~ 176 (323)
.+++|+++|+.|+ ||.. ++++|.. .|.
T Consensus 170 k~k~Iv~yCtgGi-Rs~k-Aa~~L~~-~Gf 196 (247)
T PRK01415 170 KGKKIAMVCTGGI-RCEK-STSLLKS-IGY 196 (247)
T ss_pred CCCeEEEECCCCh-HHHH-HHHHHHH-cCC
Confidence 5789999999995 7754 4556654 565
No 52
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=83.70 E-value=2.2 Score=41.58 Aligned_cols=56 Identities=9% Similarity=0.091 Sum_probs=30.7
Q ss_pred cccccchHHHHhhhccceeeecchhHH-----HHHHHhhhccccCcceecCc----EEEcCCCCc
Q 020662 25 KDVVVSDAKRILVGAGARVLFYPTLLY-----NVVRNKIQSEFRWWDRVDQF----IILGAVPFP 80 (323)
Q Consensus 25 ~~~~~~~~~~~l~~~~~r~l~~P~ll~-----~~~~~~~~~~~~~~~~I~~~----LylG~~p~a 80 (323)
|++...+..-.+++.....++.|--+. ...+.+-...+|-|+++.+. |..++.|..
T Consensus 41 Wri~~~N~~y~~c~tYP~~lvVP~~i~D~~l~~~a~~r~~~R~Pv~~W~~~~~~a~L~Rssqp~~ 105 (353)
T PF06602_consen 41 WRISDINSNYELCPTYPSLLVVPSSISDEELKKSAKFRSKGRFPVLSWRHPENGAVLLRSSQPLV 105 (353)
T ss_dssp EEEEGCCTTSSS-TTS-SSEEEETTS-HHHHHHHHHHBGGG---EEEEE-TTT--EEEEEE-B--
T ss_pred eeEEEEcCCCCccccccceEEEEEEecHHHHHHhhhhccCCccceEEEeecCCCeEEEEeccccc
Confidence 788777776678888888888886543 22222334456667776632 888888764
No 53
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=83.39 E-value=3.3 Score=32.09 Aligned_cols=71 Identities=18% Similarity=0.090 Sum_probs=40.4
Q ss_pred HHhcCccEEEEcCCCCCccCCccccccCCcE-EEEEeCCCCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEcCCCCCchHH
Q 020662 86 LKELGVSGVVTLNESYETLVPTSLYHDHNID-HLVIPTRDYLFAPSFADICQAVDFIHENASLGKTTYVHCKAGRGRSTT 164 (323)
Q Consensus 86 Lk~~GI~~VInL~~~~e~~~~~~~~~~~gi~-yl~iP~~D~~~~p~~~~l~~a~~~I~~~~~~g~~VLVHC~~G~gRSgt 164 (323)
+...+-..||++..+.+. .. .+-.. ..++|+.+.... ..... ...+++++|+|+.|. ||..
T Consensus 15 ~~~~~~~~liDvR~~~e~--~~----~~i~~~~~~ip~~~~~~~--~~~~~---------~~~~~~ivv~C~~G~-rS~~ 76 (110)
T COG0607 15 LLAGEDAVLLDVREPEEY--ER----GHIPGAAINIPLSELKAA--ENLLE---------LPDDDPIVVYCASGV-RSAA 76 (110)
T ss_pred hhccCCCEEEeccChhHh--hh----cCCCcceeeeecccchhh--hcccc---------cCCCCeEEEEeCCCC-ChHH
Confidence 344566789999887331 11 11123 567777654211 00001 456799999999996 8854
Q ss_pred HHHHHHHHhcCC
Q 020662 165 IVLCYLVEHRQM 176 (323)
Q Consensus 165 vv~aYLm~~~g~ 176 (323)
. +.+|.. .|.
T Consensus 77 a-a~~L~~-~G~ 86 (110)
T COG0607 77 A-AAALKL-AGF 86 (110)
T ss_pred H-HHHHHH-cCC
Confidence 4 444543 554
No 54
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=80.40 E-value=2.8 Score=43.19 Aligned_cols=33 Identities=27% Similarity=0.388 Sum_probs=24.5
Q ss_pred HHHHHHHHHhc-CCCeEEEEcCCCCCchHHHHHH
Q 020662 136 QAVDFIHENAS-LGKTTYVHCKAGRGRSTTIVLC 168 (323)
Q Consensus 136 ~a~~~I~~~~~-~g~~VLVHC~~G~gRSgtvv~a 168 (323)
++..+|.+++. .|-+|||||..|..||..|+..
T Consensus 331 ~~a~~ia~~l~~~~~sVlvhcsdGwDrT~qV~SL 364 (573)
T KOG1089|consen 331 KAAAEIAKCLSSEGASVLVHCSDGWDRTCQVSSL 364 (573)
T ss_pred HHHHHHHHHHHhCCCeEEEEccCCcchhHHHHHH
Confidence 33444555555 4689999999999999988753
No 55
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=79.36 E-value=4.1 Score=39.10 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=19.4
Q ss_pred CCCeEEEEcCCCCCchHHHHHHHHHHhcCC
Q 020662 147 LGKTTYVHCKAGRGRSTTIVLCYLVEHRQM 176 (323)
Q Consensus 147 ~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~ 176 (323)
.+++|+|+|..|+ ||.. ++.||.. .|.
T Consensus 170 kdk~IvvyC~~G~-Rs~~-aa~~L~~-~Gf 196 (314)
T PRK00142 170 KDKKVVMYCTGGI-RCEK-ASAWMKH-EGF 196 (314)
T ss_pred CcCeEEEECCCCc-HHHH-HHHHHHH-cCC
Confidence 4689999999995 7754 4556654 565
No 56
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=79.04 E-value=9.6 Score=30.41 Aligned_cols=30 Identities=20% Similarity=-0.004 Sum_probs=20.4
Q ss_pred cCCCeEEEEcCCCCCchHHHHHHHHHHhcCCC
Q 020662 146 SLGKTTYVHCKAGRGRSTTIVLCYLVEHRQMA 177 (323)
Q Consensus 146 ~~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~s 177 (323)
..+.+|+|+|..| +++++.++.+| +..|.+
T Consensus 77 ~~~~~vv~~c~~g-~~~a~~~~~~l-~~~G~~ 106 (122)
T cd01448 77 SNDDTVVVYDDGG-GFFAARAWWTL-RYFGHE 106 (122)
T ss_pred CCCCEEEEECCCC-CccHHHHHHHH-HHcCCC
Confidence 4578999999998 55666655444 446653
No 57
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=71.76 E-value=11 Score=36.01 Aligned_cols=93 Identities=19% Similarity=0.264 Sum_probs=62.0
Q ss_pred ceecCcEEEcCCCCccCHHHHHhcCccEEEEcCCCCCccCCccccccCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHh
Q 020662 66 DRVDQFIILGAVPFPADVLRLKELGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTRDYLFAPSFADICQAVDFIHENA 145 (323)
Q Consensus 66 ~~I~~~LylG~~p~a~d~~~Lk~~GI~~VInL~~~~e~~~~~~~~~~~gi~yl~iP~~D~~~~p~~~~l~~a~~~I~~~~ 145 (323)
+.|+|.-.+|....+.++..+-.-.=+-|||..+.+|... - +|. + ...|....|.++-.++.++.
T Consensus 103 ddv~p~~~vG~yl~p~~wn~~l~D~~~vviDtRN~YE~~i----------G--~F~--g-Av~p~~~tFrefP~~v~~~~ 167 (308)
T COG1054 103 DDVDPLENVGTYLSPKDWNELLSDPDVVVIDTRNDYEVAI----------G--HFE--G-AVEPDIETFREFPAWVEENL 167 (308)
T ss_pred CCcCccccccCccCHHHHHHHhcCCCeEEEEcCcceeEee----------e--eec--C-ccCCChhhhhhhHHHHHHHH
Confidence 3477777778888888887665444478888888765211 1 111 1 23577788888888888776
Q ss_pred c--CCCeEEEEcCCCCCchHHHHHHHHHHhcCC
Q 020662 146 S--LGKTTYVHCKAGRGRSTTIVLCYLVEHRQM 176 (323)
Q Consensus 146 ~--~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~ 176 (323)
. .+++|...|+.|+ |.=- +.+||.. .|.
T Consensus 168 ~~~~~KkVvmyCTGGI-RCEK-as~~m~~-~GF 197 (308)
T COG1054 168 DLLKDKKVVMYCTGGI-RCEK-ASAWMKE-NGF 197 (308)
T ss_pred HhccCCcEEEEcCCce-eehh-hHHHHHH-hcc
Confidence 5 3789999999998 6533 3455553 444
No 58
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=68.44 E-value=13 Score=29.05 Aligned_cols=27 Identities=19% Similarity=0.135 Sum_probs=18.2
Q ss_pred CCCeEEEEcCCCCCchHHHHHHHHHHhcCC
Q 020662 147 LGKTTYVHCKAGRGRSTTIVLCYLVEHRQM 176 (323)
Q Consensus 147 ~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~ 176 (323)
.+.+|+|||..|. ||.. ++..| +..|.
T Consensus 65 ~~~~ivv~C~~G~-rs~~-a~~~L-~~~G~ 91 (109)
T cd01533 65 PRTPIVVNCAGRT-RSII-GAQSL-INAGL 91 (109)
T ss_pred CCCeEEEECCCCc-hHHH-HHHHH-HHCCC
Confidence 3579999999996 7744 33334 44665
No 59
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=64.71 E-value=22 Score=28.80 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=28.4
Q ss_pred HHHHhcCccEEEEcCCCCCccCC---c----cccccCCcEEEEEeCCC
Q 020662 84 LRLKELGVSGVVTLNESYETLVP---T----SLYHDHNIDHLVIPTRD 124 (323)
Q Consensus 84 ~~Lk~~GI~~VInL~~~~e~~~~---~----~~~~~~gi~yl~iP~~D 124 (323)
..|+..||+.|||+..-.....+ . ......||.|.++|...
T Consensus 7 ~~l~~~~i~~lVDVR~~P~S~~~~~~k~~l~~~l~~~gi~Y~~~~~Lg 54 (122)
T PF04343_consen 7 DLLKKNGIRVLVDVRLWPRSRKPGFNKEDLASFLEEAGIEYVWLPELG 54 (122)
T ss_pred HHHHHCCCeEEEEECCCCCCCCCCCCHHHHHHHHHHCCceEeechhhc
Confidence 46789999999998654321111 1 23456799999999754
No 60
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=61.52 E-value=21 Score=29.01 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=21.1
Q ss_pred hcCCCeEEEEcCCCCCchHHHHHHHHHHhcCC
Q 020662 145 ASLGKTTYVHCKAGRGRSTTIVLCYLVEHRQM 176 (323)
Q Consensus 145 ~~~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~ 176 (323)
+..+.+|+|+|..|-.||..++ ++++..|.
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a~--~~L~~~G~ 112 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSLA--WLLESLGI 112 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHHH--HHHHHcCC
Confidence 4457899999985545777544 77776665
No 61
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=59.19 E-value=11 Score=28.90 Aligned_cols=29 Identities=17% Similarity=0.159 Sum_probs=19.3
Q ss_pred cCCCeEEEEcCCCCCchHHHHHHHHHHhcCCC
Q 020662 146 SLGKTTYVHCKAGRGRSTTIVLCYLVEHRQMA 177 (323)
Q Consensus 146 ~~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~s 177 (323)
..+++|+|+|..|. ||..++ ..| +..|.+
T Consensus 59 ~~~~~ivv~C~~G~-rs~~aa-~~L-~~~G~~ 87 (100)
T cd01523 59 PDDQEVTVICAKEG-SSQFVA-ELL-AERGYD 87 (100)
T ss_pred CCCCeEEEEcCCCC-cHHHHH-HHH-HHcCce
Confidence 45689999999994 775443 334 345653
No 62
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=57.46 E-value=25 Score=26.95 Aligned_cols=28 Identities=29% Similarity=0.519 Sum_probs=18.7
Q ss_pred CCCeEEEEcCCCCCchHHHHHHHHHHhcCCC
Q 020662 147 LGKTTYVHCKAGRGRSTTIVLCYLVEHRQMA 177 (323)
Q Consensus 147 ~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~s 177 (323)
.+++|+++|..| .||... +.+|.+ .|.+
T Consensus 57 ~~~~vv~~c~~g-~rs~~~-~~~l~~-~G~~ 84 (101)
T cd01528 57 PDKDIVVLCHHG-GRSMQV-AQWLLR-QGFE 84 (101)
T ss_pred CCCeEEEEeCCC-chHHHH-HHHHHH-cCCc
Confidence 468999999998 477554 334443 5653
No 63
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=56.72 E-value=23 Score=30.39 Aligned_cols=29 Identities=10% Similarity=-0.129 Sum_probs=20.8
Q ss_pred cCCCeEEEEcCCCCCchHHHHHHHHHHhcCC
Q 020662 146 SLGKTTYVHCKAGRGRSTTIVLCYLVEHRQM 176 (323)
Q Consensus 146 ~~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~ 176 (323)
.++.+|+|.|..|..||.. ++++++..|.
T Consensus 114 ~~d~~IVvYC~~G~~~S~~--aa~~L~~~G~ 142 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWN--AAKRALAYGY 142 (162)
T ss_pred CCCCEEEEEECCCCHHHHH--HHHHHHhcCC
Confidence 3568999999998767776 4555555565
No 64
>PRK05569 flavodoxin; Provisional
Probab=55.90 E-value=1e+02 Score=25.02 Aligned_cols=90 Identities=6% Similarity=-0.031 Sum_probs=52.0
Q ss_pred cCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEcCCCCC-chHHHHHHHHHHhcCCCHHHHHHHHHHhCC
Q 020662 112 DHNIDHLVIPTRDYLFAPSFADICQAVDFIHENASLGKTTYVHCKAGRG-RSTTIVLCYLVEHRQMAPEAAYEYVRSIRP 190 (323)
Q Consensus 112 ~~gi~yl~iP~~D~~~~p~~~~l~~a~~~I~~~~~~g~~VLVHC~~G~g-RSgtvv~aYLm~~~g~s~~~A~~~vr~~Rp 190 (323)
....-.+-.|+.... ......+..+++.+.....+|+++.+.+..|.+ ..+.-.+.-.+...|+..-.. ..-
T Consensus 48 ~~d~iilgsPty~~~-~~~~~~~~~~~~~l~~~~~~~K~v~~f~t~g~~~~~~~~~~~~~l~~~g~~~~~~------~~~ 120 (141)
T PRK05569 48 EADAVAFGSPSMDNN-NIEQEEMAPFLDQFKLTPNENKKCILFGSYGWDNGEFMKLWKDRMKDYGFNVIGD------LAV 120 (141)
T ss_pred hCCEEEEECCCcCCC-cCChHHHHHHHHHhhccCcCCCEEEEEeCCCCCCCcHHHHHHHHHHHCCCeEeee------EEE
Confidence 344566677776542 122245556666554433468999999999875 233222334445566644332 111
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 020662 191 RVLLASSQWQAVQDYYLQ 208 (323)
Q Consensus 191 ~i~~~~~q~~~L~~~~~~ 208 (323)
...|+...++.+++|.+.
T Consensus 121 ~~~p~~~~~~~~~~~g~~ 138 (141)
T PRK05569 121 NESPNKEELNSAKELGKK 138 (141)
T ss_pred ccCCCHHHHHHHHHHHHH
Confidence 234888999998888743
No 65
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=53.92 E-value=62 Score=24.62 Aligned_cols=82 Identities=13% Similarity=0.127 Sum_probs=44.6
Q ss_pred hcCccEEEEcCCCCCccCCccccccCCcEEEEEeCCCC---CCCCcHHHHHHHHHHHHHHhcCCCeEEEEcCCCCCchHH
Q 020662 88 ELGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTRDY---LFAPSFADICQAVDFIHENASLGKTTYVHCKAGRGRSTT 164 (323)
Q Consensus 88 ~~GI~~VInL~~~~e~~~~~~~~~~~gi~yl~iP~~D~---~~~p~~~~l~~a~~~I~~~~~~g~~VLVHC~~G~gRSgt 164 (323)
+.+=..|||++.+.+ +... +-. .-+++|.... ........+.............+..|+++|..|. |+..
T Consensus 10 ~~~~~~liD~R~~~~--~~~~--hI~--ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~-~~~~ 82 (113)
T PF00581_consen 10 ENESVLLIDVRSPEE--YERG--HIP--GAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGW-RSGS 82 (113)
T ss_dssp TTTTEEEEEESSHHH--HHHS--BET--TEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSC-HHHH
T ss_pred hCCCeEEEEeCCHHH--HHcC--CCC--CCccccccccccccccccccccccccccccccccccccceeeeeccc-ccch
Confidence 445567899886533 1111 011 2256666321 1233445555555555555566789999997765 5655
Q ss_pred HHHH---HHHHhcCC
Q 020662 165 IVLC---YLVEHRQM 176 (323)
Q Consensus 165 vv~a---YLm~~~g~ 176 (323)
.+.+ |.+...|.
T Consensus 83 ~~~~~~~~~l~~~g~ 97 (113)
T PF00581_consen 83 AAAARVAWILKKLGF 97 (113)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHcCC
Confidence 5544 33544454
No 66
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=52.25 E-value=29 Score=27.75 Aligned_cols=29 Identities=14% Similarity=0.286 Sum_probs=19.2
Q ss_pred hcCCCeEEEEcCCCCCchHHHHHHHHHHhcCC
Q 020662 145 ASLGKTTYVHCKAGRGRSTTIVLCYLVEHRQM 176 (323)
Q Consensus 145 ~~~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~ 176 (323)
...+++|+|+|..| .||...+. +| +..|.
T Consensus 61 ~~~~~~ivv~C~~G-~rs~~aa~-~L-~~~G~ 89 (117)
T cd01522 61 VGKDRPVLLLCRSG-NRSIAAAE-AA-AQAGF 89 (117)
T ss_pred CCCCCeEEEEcCCC-ccHHHHHH-HH-HHCCC
Confidence 34568999999998 47776533 33 34554
No 67
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=51.16 E-value=20 Score=25.04 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=19.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHh
Q 020662 164 TIVLCYLVEHRQMAPEAAYEYVRSI 188 (323)
Q Consensus 164 tvv~aYLm~~~g~s~~~A~~~vr~~ 188 (323)
.-+...||...|+|.++|+.+++..
T Consensus 16 ~~AkgiLm~~~g~~e~~A~~~Lr~~ 40 (56)
T PF03861_consen 16 EQAKGILMARYGLSEDEAYRLLRRQ 40 (56)
T ss_dssp HHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 3456789999999999999999865
No 68
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=51.15 E-value=60 Score=31.58 Aligned_cols=28 Identities=14% Similarity=0.196 Sum_probs=19.7
Q ss_pred CCCeEEEEcCCCCCchHHHHHHHHHHhcCC
Q 020662 147 LGKTTYVHCKAGRGRSTTIVLCYLVEHRQM 176 (323)
Q Consensus 147 ~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~ 176 (323)
.+.+|+|+|..|-.||+.++ +++...|.
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa--~~L~~~G~ 114 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQ--QWLKEAGI 114 (345)
T ss_pred CCCeEEEEECCCChHHHHHH--HHHHHcCC
Confidence 56899999976657988864 34444565
No 69
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=45.54 E-value=36 Score=32.31 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=16.1
Q ss_pred eEEEEcCCCCCchHHHHH
Q 020662 150 TTYVHCKAGRGRSTTIVL 167 (323)
Q Consensus 150 ~VLVHC~~G~gRSgtvv~ 167 (323)
.|-|=|+.|.+||.+++=
T Consensus 244 tIaiGCTGG~HRSV~iae 261 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIAE 261 (284)
T ss_pred EEEEEcCCCcCcHHHHHH
Confidence 688999999999999873
No 70
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=42.15 E-value=34 Score=25.97 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=17.7
Q ss_pred CCeEEEEcCCCCCchHHHHHHHHHHhcCC
Q 020662 148 GKTTYVHCKAGRGRSTTIVLCYLVEHRQM 176 (323)
Q Consensus 148 g~~VLVHC~~G~gRSgtvv~aYLm~~~g~ 176 (323)
+.+|+++|..|. ||... +.+| +..|.
T Consensus 56 ~~~iv~~c~~G~-rs~~a-a~~L-~~~G~ 81 (95)
T cd01534 56 GARIVLADDDGV-RADMT-ASWL-AQMGW 81 (95)
T ss_pred CCeEEEECCCCC-hHHHH-HHHH-HHcCC
Confidence 578999999985 76543 4444 44565
No 71
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=41.89 E-value=57 Score=29.06 Aligned_cols=39 Identities=15% Similarity=0.143 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEEEcCCCCCchHHHHHHHHHH
Q 020662 131 FADICQAVDFIHENASLGKTTYVHCKAGRGRSTTIVLCYLVE 172 (323)
Q Consensus 131 ~~~l~~a~~~I~~~~~~g~~VLVHC~~G~gRSgtvv~aYLm~ 172 (323)
.+.+.++++.|.+.+.++++|++. |.|+|+.++..+-++
T Consensus 24 ~~~i~~a~~~l~~~l~~~~rI~~~---G~GgSa~~A~~~a~~ 62 (196)
T PRK10886 24 PDAISRAAMTLVQSLLNGNKILCC---GNGTSAANAQHFAAS 62 (196)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEE---ECcHHHHHHHHHHHH
Confidence 467889999999998899999985 888999887665543
No 72
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=41.15 E-value=47 Score=25.10 Aligned_cols=29 Identities=10% Similarity=-0.065 Sum_probs=18.1
Q ss_pred CCCeEEEEcCCCCCchHHHHHHHHHHhcCC
Q 020662 147 LGKTTYVHCKAGRGRSTTIVLCYLVEHRQM 176 (323)
Q Consensus 147 ~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~ 176 (323)
.+.+|+|+|..|...++..++..| +..|.
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L-~~~G~ 77 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRL-SELGY 77 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHH-HHcCc
Confidence 367999999998533344444444 44554
No 73
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=40.59 E-value=43 Score=29.34 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=27.2
Q ss_pred cHHHHHHHHHHHHHHhcCCCeEEEEcCCCCCchHHHH
Q 020662 130 SFADICQAVDFIHENASLGKTTYVHCKAGRGRSTTIV 166 (323)
Q Consensus 130 ~~~~l~~a~~~I~~~~~~g~~VLVHC~~G~gRSgtvv 166 (323)
..+.+.++.+.|-+.+..|+||+++ |.|+|++=+
T Consensus 23 l~~~I~~aa~~i~~~l~~G~Kvl~c---GNGgSaadA 56 (176)
T COG0279 23 LIEAIERAAQLLVQSLLNGNKVLAC---GNGGSAADA 56 (176)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEEEE---CCCcchhhH
Confidence 4577888888898899999999985 777887644
No 74
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=39.78 E-value=23 Score=32.76 Aligned_cols=83 Identities=17% Similarity=0.203 Sum_probs=53.1
Q ss_pred cEEEcCCCCcc-CHHHHHhcCccEEEEcCCCCCccCC---ccccccCCcEEEEEeCCCCC-----CCCcHHHHHHHHHHH
Q 020662 71 FIILGAVPFPA-DVLRLKELGVSGVVTLNESYETLVP---TSLYHDHNIDHLVIPTRDYL-----FAPSFADICQAVDFI 141 (323)
Q Consensus 71 ~LylG~~p~a~-d~~~Lk~~GI~~VInL~~~~e~~~~---~~~~~~~gi~yl~iP~~D~~-----~~p~~~~l~~a~~~I 141 (323)
.+..|+.-... -..++++++|+.|||.+.|+-.... .+.+++.||.|+++-=.... .--....++++++++
T Consensus 45 ~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR~~~~~~~~~~~~~v~s~~~a~~~l 124 (248)
T PRK08057 45 PVRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYLRLERPSWLPQPGDRWIEVDDIEEAAEAL 124 (248)
T ss_pred eEEECCCCCHHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeCCCcCCCCCCCEEEECCHHHHHHHh
Confidence 47788874444 4466789999999999988643211 24567789999888633221 011245677777777
Q ss_pred HHHhcCCCeEEEEcCCCC
Q 020662 142 HENASLGKTTYVHCKAGR 159 (323)
Q Consensus 142 ~~~~~~g~~VLVHC~~G~ 159 (323)
.+. ++||. ..|.
T Consensus 125 ~~~----~~vll--ttGs 136 (248)
T PRK08057 125 APF----RRVLL--TTGR 136 (248)
T ss_pred hcc----CCEEE--ecCc
Confidence 543 56776 5564
No 75
>PRK05320 rhodanese superfamily protein; Provisional
Probab=39.44 E-value=67 Score=29.84 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=19.4
Q ss_pred CCCeEEEEcCCCCCchHHHHHHHHHHhcCC
Q 020662 147 LGKTTYVHCKAGRGRSTTIVLCYLVEHRQM 176 (323)
Q Consensus 147 ~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~ 176 (323)
++++|+++|..|. ||.. ++.+|.. .|.
T Consensus 174 kdk~IvvyC~~G~-Rs~~-Aa~~L~~-~Gf 200 (257)
T PRK05320 174 AGKTVVSFCTGGI-RCEK-AAIHMQE-VGI 200 (257)
T ss_pred CCCeEEEECCCCH-HHHH-HHHHHHH-cCC
Confidence 4689999999995 7755 4555654 555
No 76
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=38.76 E-value=39 Score=25.63 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=18.9
Q ss_pred hcCCCeEEEEcCCCCCchHHHHHHHHHHhcCC
Q 020662 145 ASLGKTTYVHCKAGRGRSTTIVLCYLVEHRQM 176 (323)
Q Consensus 145 ~~~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~ 176 (323)
+..+.+|+|+|..| .||.. +++++...|.
T Consensus 58 ~~~~~~ivv~c~~g-~~s~~--~~~~l~~~G~ 86 (103)
T cd01447 58 FAEDKPFVFYCASG-WRSAL--AGKTLQDMGL 86 (103)
T ss_pred CCCCCeEEEEcCCC-CcHHH--HHHHHHHcCh
Confidence 34568999999988 47643 3344554554
No 77
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=38.74 E-value=26 Score=32.73 Aligned_cols=28 Identities=18% Similarity=0.381 Sum_probs=17.6
Q ss_pred cCCCeEEEEcCCCCCchHHHHHHHHHHhcCC
Q 020662 146 SLGKTTYVHCKAGRGRSTTIVLCYLVEHRQM 176 (323)
Q Consensus 146 ~~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~ 176 (323)
..+++|+++|..|+ |+ +++..+| +..|.
T Consensus 229 ~~~~~ii~yC~~G~-~A-~~~~~~l-~~~G~ 256 (281)
T PRK11493 229 SFDRPIIASCGSGV-TA-AVVVLAL-ATLDV 256 (281)
T ss_pred CCCCCEEEECCcHH-HH-HHHHHHH-HHcCC
Confidence 44679999998886 44 4433333 44555
No 78
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=38.37 E-value=47 Score=31.47 Aligned_cols=37 Identities=24% Similarity=0.259 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHh----cCCC---eEEEEcCCCCCchHHHHHH
Q 020662 132 ADICQAVDFIHENA----SLGK---TTYVHCKAGRGRSTTIVLC 168 (323)
Q Consensus 132 ~~l~~a~~~I~~~~----~~g~---~VLVHC~~G~gRSgtvv~a 168 (323)
+.+..+.++++.++ ..|+ .|-|=|..|.+||.+++-.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~igCtGG~HRSV~~~e~ 265 (288)
T PRK05416 222 EFLDKIRDLLEFWLPGYEREGKSYLTIAIGCTGGQHRSVAIAER 265 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEEecCCCcccHHHHHHH
Confidence 44444444554433 3343 5889999999999998743
No 79
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=38.14 E-value=31 Score=32.18 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=23.0
Q ss_pred CCCCCchHHHHHHHHHHhcCCCHHHHHHHH
Q 020662 156 KAGRGRSTTIVLCYLVEHRQMAPEAAYEYV 185 (323)
Q Consensus 156 ~~G~gRSgtvv~aYLm~~~g~s~~~A~~~v 185 (323)
--|+||||+.+.+-++ .|++.++|.++=
T Consensus 159 ~PGiSRSG~Ti~~~l~--~G~~r~~A~~fS 186 (259)
T PF02673_consen 159 IPGISRSGATITAGLL--LGLDREEAARFS 186 (259)
T ss_pred CCCcChHHHHHHHHHH--CCCCHHHHHHHH
Confidence 4699999999988777 599999887653
No 80
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=37.85 E-value=47 Score=25.41 Aligned_cols=26 Identities=8% Similarity=0.175 Sum_probs=17.6
Q ss_pred CCeEEEEcCCCCCchHHHHHHHHHHhcCC
Q 020662 148 GKTTYVHCKAGRGRSTTIVLCYLVEHRQM 176 (323)
Q Consensus 148 g~~VLVHC~~G~gRSgtvv~aYLm~~~g~ 176 (323)
+++|+|+|..|. ||+.++. .++..|.
T Consensus 65 ~~~vv~~c~~g~-~s~~~a~--~L~~~G~ 90 (105)
T cd01525 65 GKIIVIVSHSHK-HAALFAA--FLVKCGV 90 (105)
T ss_pred CCeEEEEeCCCc-cHHHHHH--HHHHcCC
Confidence 588999999986 7755433 3444555
No 81
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=37.33 E-value=53 Score=32.23 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=17.4
Q ss_pred CeEEEEcCCCCCchHHHHHHHHHHhcCC
Q 020662 149 KTTYVHCKAGRGRSTTIVLCYLVEHRQM 176 (323)
Q Consensus 149 ~~VLVHC~~G~gRSgtvv~aYLm~~~g~ 176 (323)
.+|+|||+.|. ||... +.+|. ..|.
T Consensus 333 ~~Ivv~C~sG~-RS~~A-a~~L~-~~G~ 357 (370)
T PRK05600 333 DNVVVYCASGI-RSADF-IEKYS-HLGH 357 (370)
T ss_pred CcEEEECCCCh-hHHHH-HHHHH-HcCC
Confidence 48999999994 87754 44454 3554
No 82
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=37.24 E-value=39 Score=25.59 Aligned_cols=28 Identities=7% Similarity=-0.132 Sum_probs=18.7
Q ss_pred cCCCeEEEEcCCCCCchHHHHHHHHHHhcCC
Q 020662 146 SLGKTTYVHCKAGRGRSTTIVLCYLVEHRQM 176 (323)
Q Consensus 146 ~~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~ 176 (323)
..+.+|+|+|..| +||+.+ +.+| +..|.
T Consensus 54 ~~~~~ivv~c~~g-~~s~~~-~~~l-~~~G~ 81 (96)
T cd01529 54 GRATRYVLTCDGS-LLARFA-AQEL-LALGG 81 (96)
T ss_pred CCCCCEEEEeCCh-HHHHHH-HHHH-HHcCC
Confidence 4568999999877 577554 4444 44565
No 83
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=36.61 E-value=23 Score=32.80 Aligned_cols=85 Identities=13% Similarity=0.173 Sum_probs=55.0
Q ss_pred cEEEcCCCCccC-HHHHHhcCccEEEEcCCCCCccCC---ccccccCCcEEEEEeCCCCCC-----CCcHHHHHHHHHHH
Q 020662 71 FIILGAVPFPAD-VLRLKELGVSGVVTLNESYETLVP---TSLYHDHNIDHLVIPTRDYLF-----APSFADICQAVDFI 141 (323)
Q Consensus 71 ~LylG~~p~a~d-~~~Lk~~GI~~VInL~~~~e~~~~---~~~~~~~gi~yl~iP~~D~~~-----~p~~~~l~~a~~~I 141 (323)
.+..|+.-.... ..+++++||+.|||.+.|+-.... ...+++.||.|+++-=..... --....+.++++.+
T Consensus 46 ~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l 125 (249)
T PF02571_consen 46 EVRVGRLGDEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFERPSWQPEPDDNWHYVDSYEEAAELL 125 (249)
T ss_pred eEEECCCCCHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEEcCCcccCCCCeEEEeCCHHHHHHHH
Confidence 488899844444 467789999999999988643211 245677899988876443221 12356677777777
Q ss_pred HHHhcCCCeEEEEcCCCC
Q 020662 142 HENASLGKTTYVHCKAGR 159 (323)
Q Consensus 142 ~~~~~~g~~VLVHC~~G~ 159 (323)
.+. .+++||. ..|.
T Consensus 126 ~~~--~~~~ifl--ttGs 139 (249)
T PF02571_consen 126 KEL--GGGRIFL--TTGS 139 (249)
T ss_pred hhc--CCCCEEE--eCch
Confidence 433 2377877 4553
No 84
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=36.45 E-value=29 Score=27.15 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=13.8
Q ss_pred CeEEEEcCCCCCchHHHH
Q 020662 149 KTTYVHCKAGRGRSTTIV 166 (323)
Q Consensus 149 ~~VLVHC~~G~gRSgtvv 166 (323)
++||+-|.+|++ |+.++
T Consensus 4 ~~ILl~C~~G~s-SS~l~ 20 (95)
T TIGR00853 4 TNILLLCAAGMS-TSLLV 20 (95)
T ss_pred cEEEEECCCchh-HHHHH
Confidence 689999999998 55544
No 85
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=35.65 E-value=50 Score=26.43 Aligned_cols=28 Identities=25% Similarity=0.400 Sum_probs=18.8
Q ss_pred cCCCeEEEEcCCCCCchHHHHHHHHHHhcCC
Q 020662 146 SLGKTTYVHCKAGRGRSTTIVLCYLVEHRQM 176 (323)
Q Consensus 146 ~~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~ 176 (323)
..+++|+|+|..|. ||...+- + ++..|.
T Consensus 70 ~~~~~ivv~C~~G~-rs~~aa~-~-L~~~G~ 97 (122)
T cd01526 70 DKDSPIYVVCRRGN-DSQTAVR-K-LKELGL 97 (122)
T ss_pred CCCCcEEEECCCCC-cHHHHHH-H-HHHcCC
Confidence 45689999999995 8764433 3 344565
No 86
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=35.00 E-value=36 Score=32.09 Aligned_cols=27 Identities=26% Similarity=0.349 Sum_probs=22.0
Q ss_pred CCCCCchHHHHHHHHHHhcCCCHHHHHHH
Q 020662 156 KAGRGRSTTIVLCYLVEHRQMAPEAAYEY 184 (323)
Q Consensus 156 ~~G~gRSgtvv~aYLm~~~g~s~~~A~~~ 184 (323)
--|.||||+-+.+-++ .|++.++|.++
T Consensus 165 iPGiSRSG~TI~a~l~--~G~~r~~Aa~f 191 (276)
T PRK12554 165 IPGVSRSGATIIAGLL--LGLTREAAARF 191 (276)
T ss_pred ccCCCCchHHHHHHHH--cCCCHHHHHHH
Confidence 3599999998888777 49999888765
No 87
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=34.58 E-value=29 Score=32.29 Aligned_cols=86 Identities=16% Similarity=0.113 Sum_probs=50.7
Q ss_pred EEEcCCCCccCHHHHHhcCccEEEEcCCCCCccC---CccccccCCcEEEEEeCC---CCCCCCcHHHHHHHHHHHHHHh
Q 020662 72 IILGAVPFPADVLRLKELGVSGVVTLNESYETLV---PTSLYHDHNIDHLVIPTR---DYLFAPSFADICQAVDFIHENA 145 (323)
Q Consensus 72 LylG~~p~a~d~~~Lk~~GI~~VInL~~~~e~~~---~~~~~~~~gi~yl~iP~~---D~~~~p~~~~l~~a~~~I~~~~ 145 (323)
+..|......-...+++.+|+.|||.+.++-... ....+++.||.|+++-=. +...-.....+.++++.+.+..
T Consensus 47 v~~g~l~~~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~eR~~~~~~~~~~~v~~~~ea~~~~~~~~ 126 (256)
T TIGR00715 47 VHTGALDPQELREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRFERPPLALGKNIIEVPDIEEATRVAYQPY 126 (256)
T ss_pred EEECCCCHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEEECCCCCCCCCeEEeCCHHHHHHHhhhcc
Confidence 5556543333236778999999999998753211 124567889999988422 1111122456777777665421
Q ss_pred cCCCeEEEEcCCCC
Q 020662 146 SLGKTTYVHCKAGR 159 (323)
Q Consensus 146 ~~g~~VLVHC~~G~ 159 (323)
..+++|+. ..|.
T Consensus 127 ~~~~~i~l--ttG~ 138 (256)
T TIGR00715 127 LRGKRVFL--TAGA 138 (256)
T ss_pred ccCCcEEE--ecCc
Confidence 13467777 5554
No 88
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=34.21 E-value=63 Score=30.47 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=15.9
Q ss_pred eEEEEcCCCCCchHHHHH
Q 020662 150 TTYVHCKAGRGRSTTIVL 167 (323)
Q Consensus 150 ~VLVHC~~G~gRSgtvv~ 167 (323)
.|-|=|..|.+||.+++=
T Consensus 245 TIaIGCTGGqHRSV~iae 262 (286)
T COG1660 245 TIAIGCTGGQHRSVYIAE 262 (286)
T ss_pred EEEEccCCCccchHHHHH
Confidence 578899999999999873
No 89
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=33.84 E-value=40 Score=31.46 Aligned_cols=27 Identities=26% Similarity=0.245 Sum_probs=22.0
Q ss_pred CCCCCchHHHHHHHHHHhcCCCHHHHHHH
Q 020662 156 KAGRGRSTTIVLCYLVEHRQMAPEAAYEY 184 (323)
Q Consensus 156 ~~G~gRSgtvv~aYLm~~~g~s~~~A~~~ 184 (323)
--|+||||+-+.+-++ .|++.++|.++
T Consensus 159 iPGiSRSG~TI~a~l~--~G~~r~~Aa~f 185 (255)
T TIGR00753 159 IPGVSRSGSTISGGLF--IGLNRKAAAEF 185 (255)
T ss_pred ccCCCCchHHHHHHHH--cCCCHHHHHHH
Confidence 3599999998888777 59998888765
No 90
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=33.17 E-value=23 Score=27.99 Aligned_cols=10 Identities=40% Similarity=1.095 Sum_probs=8.9
Q ss_pred CeEEEEcCCC
Q 020662 149 KTTYVHCKAG 158 (323)
Q Consensus 149 ~~VLVHC~~G 158 (323)
.+|||||.-|
T Consensus 86 ~~~yIhCsIG 95 (97)
T PF10302_consen 86 PRIYIHCSIG 95 (97)
T ss_pred CeEEEEEecc
Confidence 6899999877
No 91
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=32.88 E-value=69 Score=26.71 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhcCCCeEEEEcCC
Q 020662 134 ICQAVDFIHENASLGKTTYVHCKA 157 (323)
Q Consensus 134 l~~a~~~I~~~~~~g~~VLVHC~~ 157 (323)
..-+++++++...+|++|+|+|..
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d 38 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPD 38 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SS
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCC
Confidence 577788999999999999999964
No 92
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=32.65 E-value=62 Score=24.70 Aligned_cols=27 Identities=30% Similarity=0.300 Sum_probs=18.4
Q ss_pred CCCeEEEEcCCCCCchHHHHHHHHHHhcCC
Q 020662 147 LGKTTYVHCKAGRGRSTTIVLCYLVEHRQM 176 (323)
Q Consensus 147 ~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~ 176 (323)
.+.+|+|+|..|. ||..+ ++++...|.
T Consensus 65 ~~~~ivv~c~~g~-~s~~~--~~~l~~~G~ 91 (106)
T cd01519 65 KDKELIFYCKAGV-RSKAA--AELARSLGY 91 (106)
T ss_pred CCCeEEEECCCcH-HHHHH--HHHHHHcCC
Confidence 4689999999985 65443 344555665
No 93
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=32.37 E-value=43 Score=31.44 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=22.1
Q ss_pred CCCCCchHHHHHHHHHHhcCCCHHHHHHH
Q 020662 156 KAGRGRSTTIVLCYLVEHRQMAPEAAYEY 184 (323)
Q Consensus 156 ~~G~gRSgtvv~aYLm~~~g~s~~~A~~~ 184 (323)
--|.||||+-+.+-++ .|++.++|.++
T Consensus 163 iPGiSRSG~TI~~~l~--~G~~r~~Aa~f 189 (268)
T PRK00281 163 IPGTSRSGATISGGLL--LGLSREAAAEF 189 (268)
T ss_pred CCCCCccHHHHHHHHH--cCCCHHHHHHH
Confidence 3599999998888777 59999988765
No 94
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=31.71 E-value=58 Score=27.37 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEcCC
Q 020662 132 ADICQAVDFIHENASLGKTTYVHCKA 157 (323)
Q Consensus 132 ~~l~~a~~~I~~~~~~g~~VLVHC~~ 157 (323)
....-++.++.++..+|.+|+|+|..
T Consensus 13 ~~~~~~c~L~~ka~~~g~rv~I~~~d 38 (142)
T PRK05728 13 ALEALLCELAEKALRAGWRVLVQCED 38 (142)
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 35667888899999999999999954
No 95
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=31.50 E-value=91 Score=24.67 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=17.2
Q ss_pred CCCeEEEEcCCCCCchHHHHHHHHHHhcCC
Q 020662 147 LGKTTYVHCKAGRGRSTTIVLCYLVEHRQM 176 (323)
Q Consensus 147 ~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~ 176 (323)
.+.+|+|+|..| .||...+ ..|. ..|.
T Consensus 59 ~~~~IVlyC~~G-~rS~~aa-~~L~-~~G~ 85 (104)
T PRK10287 59 KNDTVKLYCNAG-RQSGQAK-EILS-EMGY 85 (104)
T ss_pred CCCeEEEEeCCC-hHHHHHH-HHHH-HcCC
Confidence 357899999988 4665554 3333 3454
No 96
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=31.31 E-value=45 Score=28.42 Aligned_cols=22 Identities=14% Similarity=0.276 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCCCeEEEEcCC
Q 020662 136 QAVDFIHENASLGKTTYVHCKA 157 (323)
Q Consensus 136 ~a~~~I~~~~~~g~~VLVHC~~ 157 (323)
-++.++.++...|.+|+|+|..
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~d 38 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCED 38 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeCC
Confidence 7889999999999999999954
No 97
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=31.03 E-value=58 Score=26.28 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=16.7
Q ss_pred cCCCeEEEEcC-CCCCchHHHHHHHHHH
Q 020662 146 SLGKTTYVHCK-AGRGRSTTIVLCYLVE 172 (323)
Q Consensus 146 ~~g~~VLVHC~-~G~gRSgtvv~aYLm~ 172 (323)
..+.+|+|||. .| .||+.+ +.+|..
T Consensus 66 ~~~~~vv~yC~~sg-~rs~~a-a~~L~~ 91 (121)
T cd01530 66 KKRRVLIFHCEFSS-KRGPRM-ARHLRN 91 (121)
T ss_pred CCCCEEEEECCCcc-ccHHHH-HHHHHH
Confidence 45689999997 55 577664 334543
No 98
>PRK13938 phosphoheptose isomerase; Provisional
Probab=30.29 E-value=1.1e+02 Score=27.21 Aligned_cols=42 Identities=14% Similarity=0.138 Sum_probs=33.2
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCeEEEEcCCCCCchHHHHHHHHHH
Q 020662 128 APSFADICQAVDFIHENASLGKTTYVHCKAGRGRSTTIVLCYLVE 172 (323)
Q Consensus 128 ~p~~~~l~~a~~~I~~~~~~g~~VLVHC~~G~gRSgtvv~aYLm~ 172 (323)
....+.+.++.+.+.+.+.+|++|++. |.|+|+.++...-.+
T Consensus 25 ~~~~~~~~~~a~~~~~~l~~g~rI~i~---G~G~S~~~A~~fa~~ 66 (196)
T PRK13938 25 RVLLEAARAIGDRLIAGYRAGARVFMC---GNGGSAADAQHFAAE 66 (196)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHHHHHHHH
Confidence 345677888888888888899999985 888898887765554
No 99
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=29.98 E-value=1.2e+02 Score=23.70 Aligned_cols=22 Identities=18% Similarity=0.219 Sum_probs=15.2
Q ss_pred CCCeEEEEcCCCCCchHHHHHH
Q 020662 147 LGKTTYVHCKAGRGRSTTIVLC 168 (323)
Q Consensus 147 ~g~~VLVHC~~G~gRSgtvv~a 168 (323)
.+.+|++||..+-.|+...+..
T Consensus 61 ~~~~iv~yC~~~~~r~~~aa~~ 82 (113)
T cd01531 61 KKDTVVFHCALSQVRGPSAARK 82 (113)
T ss_pred CCCeEEEEeecCCcchHHHHHH
Confidence 3579999998554677665443
No 100
>smart00400 ZnF_CHCC zinc finger.
Probab=29.83 E-value=67 Score=22.16 Aligned_cols=32 Identities=16% Similarity=0.426 Sum_probs=22.9
Q ss_pred EEEcCCCCCchHHHHHHHHHHhcCCCHHHHHHHH
Q 020662 152 YVHCKAGRGRSTTIVLCYLVEHRQMAPEAAYEYV 185 (323)
Q Consensus 152 LVHC~~G~gRSgtvv~aYLm~~~g~s~~~A~~~v 185 (323)
..||-. -|+.|-+ +-++|+..|++..+|++.+
T Consensus 23 ~~~Cf~-cg~gGd~-i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFG-CGAGGNV-ISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred EEEEeC-CCCCCCH-HHHHHHHHCcCHHHHHHHh
Confidence 467774 3566655 5556777899999999875
No 101
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=29.28 E-value=1.1e+02 Score=27.62 Aligned_cols=36 Identities=28% Similarity=0.369 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEcCCCCCchHHHHHHHHHHh
Q 020662 132 ADICQAVDFIHENASLGKTTYVHCKAGRGRSTTIVLCYLVEH 173 (323)
Q Consensus 132 ~~l~~a~~~I~~~~~~g~~VLVHC~~G~gRSgtvv~aYLm~~ 173 (323)
+.|.++++.|-++ .++|+|- |.||||.++=++-|+.
T Consensus 26 ~~~~~a~~~i~~~---~gkv~V~---G~GkSG~Igkk~Aa~L 61 (202)
T COG0794 26 EDFVRAVELILEC---KGKVFVT---GVGKSGLIGKKFAARL 61 (202)
T ss_pred HHHHHHHHHHHhc---CCcEEEE---cCChhHHHHHHHHHHH
Confidence 4556666655544 5778884 9999999998877763
No 102
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=28.93 E-value=67 Score=24.32 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=17.6
Q ss_pred cCCCeEEEEcCCCCCchHHHHHHHHHHhcCC
Q 020662 146 SLGKTTYVHCKAGRGRSTTIVLCYLVEHRQM 176 (323)
Q Consensus 146 ~~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~ 176 (323)
..+++|+|+|..|. ||.. ++..|.+ .|.
T Consensus 52 ~~~~~iv~~c~~g~-~s~~-~~~~L~~-~g~ 79 (99)
T cd01527 52 VGANAIIFHCRSGM-RTQQ-NAERLAA-ISA 79 (99)
T ss_pred CCCCcEEEEeCCCc-hHHH-HHHHHHH-cCC
Confidence 45689999999984 5554 3333443 444
No 103
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=28.25 E-value=77 Score=24.88 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=17.7
Q ss_pred CCCeEEEEcCCCCCchHHHHHHHHHHhcCC
Q 020662 147 LGKTTYVHCKAGRGRSTTIVLCYLVEHRQM 176 (323)
Q Consensus 147 ~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~ 176 (323)
.+.+|+|+|..|. ||...+ ..|. ..|.
T Consensus 57 ~~~~vvlyC~~G~-rS~~aa-~~L~-~~G~ 83 (101)
T TIGR02981 57 KNDTVKLYCNAGR-QSGMAK-DILL-DMGY 83 (101)
T ss_pred CCCeEEEEeCCCH-HHHHHH-HHHH-HcCC
Confidence 4578999999994 766553 3333 3554
No 104
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=28.10 E-value=96 Score=24.30 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=14.4
Q ss_pred CCeEEEEcCCCCCchHHHH
Q 020662 148 GKTTYVHCKAGRGRSTTIV 166 (323)
Q Consensus 148 g~~VLVHC~~G~gRSgtvv 166 (323)
..+|++||..|-.||...+
T Consensus 66 ~~~iv~~C~~~g~rs~~a~ 84 (113)
T cd01443 66 VKLAIFYCGSSQGRGPRAA 84 (113)
T ss_pred CCEEEEECCCCCcccHHHH
Confidence 4789999998656876543
No 105
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=27.61 E-value=4.6e+02 Score=23.63 Aligned_cols=78 Identities=19% Similarity=0.172 Sum_probs=41.7
Q ss_pred ccCHHHHHhcCccEEEEcCCCCCccCCccccccCCcEEEEEeCCCCC----CCCcHHHHHHHHHHHHHHhcCCCeEEEEc
Q 020662 80 PADVLRLKELGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTRDYL----FAPSFADICQAVDFIHENASLGKTTYVHC 155 (323)
Q Consensus 80 a~d~~~Lk~~GI~~VInL~~~~e~~~~~~~~~~~gi~yl~iP~~D~~----~~p~~~~l~~a~~~I~~~~~~g~~VLVHC 155 (323)
..-.+.|++.|+..|++-........+.......++.|+++--.+.. ..-..+.+++..+.|.+...+++.|+|-.
T Consensus 132 ~~~~~~l~~~~~~~v~~d~~~~~~~p~~~~~~~~~~~y~RlhG~~~~~~~~~~Ys~~eL~~~a~~i~~~~~~~~~v~v~f 211 (230)
T PF01904_consen 132 EEVFELLREHGVALVIADSPRLPSLPPPEPQTTPDFAYVRLHGRNGEGWYDYRYSDEELEEWAERIRAWAAQGKEVYVFF 211 (230)
T ss_dssp HHHHHHHHHTT-EEEEEE---BTTC------SSTTEEEEEE--S-TTTTTB----HHHHHHHHHHHHHHHTCSSEEEEEE
T ss_pred HHHHHHHHHcCCEEEEeCCcccCCCCCcccccCCCCeEEeeccCcccccccccCCHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 34456789999999987655421111111111235667666544321 11246889999999999888888877766
Q ss_pred CC
Q 020662 156 KA 157 (323)
Q Consensus 156 ~~ 157 (323)
..
T Consensus 212 nN 213 (230)
T PF01904_consen 212 NN 213 (230)
T ss_dssp -S
T ss_pred eC
Confidence 54
No 106
>PRK09875 putative hydrolase; Provisional
Probab=27.45 E-value=2.2e+02 Score=27.04 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=14.8
Q ss_pred CHHHHHhcCccEEEEcCCC
Q 020662 82 DVLRLKELGVSGVVTLNES 100 (323)
Q Consensus 82 d~~~Lk~~GI~~VInL~~~ 100 (323)
.+..+++.|.++||+++..
T Consensus 39 el~~~~~~Gg~tiVd~T~~ 57 (292)
T PRK09875 39 EMNDLMTRGVRNVIEMTNR 57 (292)
T ss_pred HHHHHHHhCCCeEEecCCC
Confidence 4556788999999998754
No 107
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=27.41 E-value=1e+02 Score=25.90 Aligned_cols=72 Identities=17% Similarity=0.081 Sum_probs=36.3
Q ss_pred HHHhcCccEEEEcCCCCCccCCccccccCCcEEEEEeCCCCCCC--CcHHHHHHHHHHHHHHhcC-CCeEEEEcCCCCCc
Q 020662 85 RLKELGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTRDYLFA--PSFADICQAVDFIHENASL-GKTTYVHCKAGRGR 161 (323)
Q Consensus 85 ~Lk~~GI~~VInL~~~~e~~~~~~~~~~~gi~yl~iP~~D~~~~--p~~~~l~~a~~~I~~~~~~-g~~VLVHC~~G~gR 161 (323)
.|-+.|=...||++++.|... . +--.-+++|..-...+ -....|. +.+...... .+.+.++|+.|. |
T Consensus 32 ~L~~~~~~~llDVRepeEfk~-g-----h~~~siNiPy~~~~~~~~l~~~eF~---kqvg~~kp~~d~eiIf~C~SG~-R 101 (136)
T KOG1530|consen 32 NLLQHPDVVLLDVREPEEFKQ-G-----HIPASINIPYMSRPGAGALKNPEFL---KQVGSSKPPHDKEIIFGCASGV-R 101 (136)
T ss_pred HHhcCCCEEEEeecCHHHhhc-c-----CCcceEeccccccccccccCCHHHH---HHhcccCCCCCCcEEEEeccCc-c
Confidence 344455567888887654211 1 1124456676432111 1122222 223222222 368999999996 8
Q ss_pred hHHHH
Q 020662 162 STTIV 166 (323)
Q Consensus 162 Sgtvv 166 (323)
|.+..
T Consensus 102 s~~A~ 106 (136)
T KOG1530|consen 102 SLKAT 106 (136)
T ss_pred hhHHH
Confidence 86644
No 108
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=27.26 E-value=1.2e+02 Score=28.97 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=18.4
Q ss_pred cCCCeEEEEcCCCCCchHHHHHHHHHHhcCC
Q 020662 146 SLGKTTYVHCKAGRGRSTTIVLCYLVEHRQM 176 (323)
Q Consensus 146 ~~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~ 176 (323)
..+.+|+|+|..|-.||..++ ++++..|+
T Consensus 72 ~~~~~vvvyC~~gG~RS~~aa--~~L~~~G~ 100 (311)
T TIGR03167 72 DGPPQPLLYCWRGGMRSGSLA--WLLAQIGF 100 (311)
T ss_pred CCCCcEEEEECCCChHHHHHH--HHHHHcCC
Confidence 334569999975546887664 44444565
No 109
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=27.23 E-value=61 Score=24.52 Aligned_cols=18 Identities=33% Similarity=0.540 Sum_probs=13.1
Q ss_pred CeEEEEcCCCCCchHHHHH
Q 020662 149 KTTYVHCKAGRGRSTTIVL 167 (323)
Q Consensus 149 ~~VLVHC~~G~gRSgtvv~ 167 (323)
++|++.|..|+| |++++.
T Consensus 1 ~kilvvCg~G~g-tS~ml~ 18 (87)
T cd05567 1 KKIVFACDAGMG-SSAMGA 18 (87)
T ss_pred CEEEEECCCCcc-HHHHHH
Confidence 479999999998 444433
No 110
>KOG1004 consensus Exosomal 3'-5' exoribonuclease complex subunit Rrp40 [Translation, ribosomal structure and biogenesis]
Probab=27.04 E-value=1.3e+02 Score=27.40 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=31.7
Q ss_pred CCCeEEEEcCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHH
Q 020662 147 LGKTTYVHCKAGRGRSTTIVLCYLVEHRQMAPEAAYEYVRS 187 (323)
Q Consensus 147 ~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~s~~~A~~~vr~ 187 (323)
-+++|+|||.. .+...+++-+||...+|+-++++.+++.
T Consensus 184 lNGriWV~ae~--~~~t~~i~~~l~~~e~~td~~q~~~~k~ 222 (230)
T KOG1004|consen 184 LNGRIWVKAET--LSDTLIIANILMNCEFMTDTQQRIMVKQ 222 (230)
T ss_pred cCceEEEeccC--cchHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 47999999987 4677788889999899998888766654
No 111
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=26.21 E-value=1.3e+02 Score=26.37 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHHHHHhcCCCeEEEEcCCCCCchHHHHHH
Q 020662 130 SFADICQAVDFIHENASLGKTTYVHCKAGRGRSTTIVLC 168 (323)
Q Consensus 130 ~~~~l~~a~~~I~~~~~~g~~VLVHC~~G~gRSgtvv~a 168 (323)
..+.+.++++.|.+.+.+|++|++. |.|.|+.++..
T Consensus 26 ~~~~i~~a~~~i~~al~~~~rI~i~---G~G~S~~~A~~ 61 (192)
T PRK00414 26 NIHAIQRAAVLIADSFKAGGKVLSC---GNGGSHCDAMH 61 (192)
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHHHH
Confidence 3478999999999999999999885 67777765433
No 112
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=25.99 E-value=1.7e+02 Score=22.57 Aligned_cols=28 Identities=14% Similarity=0.228 Sum_probs=18.0
Q ss_pred cCCCeEEEEcCCCCCchHHHHHHHHHHhcCC
Q 020662 146 SLGKTTYVHCKAGRGRSTTIVLCYLVEHRQM 176 (323)
Q Consensus 146 ~~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~ 176 (323)
..+++++|+|..|. ||... +. .++..|.
T Consensus 56 ~~~~~ivv~c~~g~-~s~~a-~~-~L~~~G~ 83 (108)
T PRK00162 56 DFDTPVMVMCYHGN-SSQGA-AQ-YLLQQGF 83 (108)
T ss_pred CCCCCEEEEeCCCC-CHHHH-HH-HHHHCCc
Confidence 45689999999985 65443 33 3444555
No 113
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=25.73 E-value=84 Score=26.95 Aligned_cols=27 Identities=4% Similarity=-0.113 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEcCCC
Q 020662 132 ADICQAVDFIHENASLGKTTYVHCKAG 158 (323)
Q Consensus 132 ~~l~~a~~~I~~~~~~g~~VLVHC~~G 158 (323)
..+.-+++++.++..+|.+|+|+|...
T Consensus 13 ~~~~~acrL~~Ka~~~G~rv~I~~~d~ 39 (154)
T PRK06646 13 LLLKSILLLIEKCYYSDLKSVILTADA 39 (154)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 455667788899999999999999653
No 114
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=25.73 E-value=2.7e+02 Score=27.74 Aligned_cols=115 Identities=15% Similarity=0.261 Sum_probs=67.1
Q ss_pred HhcCccEEEEcCCCCCccCCccccccCCcEEEEEeCCCCCCCCcHHHH------------HHHHHHHHHHhcCC-CeEEE
Q 020662 87 KELGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTRDYLFAPSFADI------------CQAVDFIHENASLG-KTTYV 153 (323)
Q Consensus 87 k~~GI~~VInL~~~~e~~~~~~~~~~~gi~yl~iP~~D~~~~p~~~~l------------~~a~~~I~~~~~~g-~~VLV 153 (323)
.++|..+|.+|...... ...+..=++...+|+. +.|..+.+ +.+.+.|.++..+| --+-|
T Consensus 88 ~~~GADtvMDLStGgdl----~eiR~~ii~~s~vPvG---TVPIYqA~~~~~~~~~~~t~d~~~~~v~~qa~~GVdfmTI 160 (432)
T COG0422 88 IKWGADTVMDLSTGGDL----HEIREWIIRNSPVPVG---TVPIYQALEEVNGKVEDLTEDDFFDTVEKQAEQGVDFMTI 160 (432)
T ss_pred HHhCcceeEecccCCCH----HHHHHHHHhcCCCCcC---CchHHHHHHHHhcchhhCCHHHHHHHHHHHHHhCCcEEEe
Confidence 46999999999875432 1111111333344443 24444333 33445566666655 35788
Q ss_pred EcC---------------CC-CCchHHHHHHHHHHhcCC-----CHHHHHHHHHH----------hCCCCCCCHH---HH
Q 020662 154 HCK---------------AG-RGRSTTIVLCYLVEHRQM-----APEAAYEYVRS----------IRPRVLLASS---QW 199 (323)
Q Consensus 154 HC~---------------~G-~gRSgtvv~aYLm~~~g~-----s~~~A~~~vr~----------~Rp~i~~~~~---q~ 199 (323)
||. .| +||-|++.++|++.+..- .+++.++..+. .||+.+.... |.
T Consensus 161 HaGV~~~~~~~~~~~~R~~giVSRGGsi~a~Wml~~~~ENply~~fd~lleI~k~yDvtlSLGDglRPG~i~DA~D~aQ~ 240 (432)
T COG0422 161 HAGVLLEYVPRTKRSGRVTGIVSRGGSIMAAWMLHNHKENPLYEHFDELLEIFKEYDVTLSLGDGLRPGCIADANDEAQF 240 (432)
T ss_pred ehhhhHHHHHHHHhcCceeeeeccchHHHHHHHHHcCCcCchhhhHHHHHHHHHHhCeeeeccCCCCCCcccCCccHHHH
Confidence 882 12 589999999999985443 35555555554 6898877554 44
Q ss_pred HHHHHHHHH
Q 020662 200 QAVQDYYLQ 208 (323)
Q Consensus 200 ~~L~~~~~~ 208 (323)
.-|.....+
T Consensus 241 ~EL~tlgeL 249 (432)
T COG0422 241 AELITLGEL 249 (432)
T ss_pred HHHHHHHHH
Confidence 444444444
No 115
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=25.70 E-value=2.7e+02 Score=27.21 Aligned_cols=80 Identities=20% Similarity=0.244 Sum_probs=50.3
Q ss_pred HHHHhcCccEEEEcCCCCCccCCccccccCCcEEEEEe-CCCCCCCCc---------HHHHHHHHHHHHHHhcCCCeEEE
Q 020662 84 LRLKELGVSGVVTLNESYETLVPTSLYHDHNIDHLVIP-TRDYLFAPS---------FADICQAVDFIHENASLGKTTYV 153 (323)
Q Consensus 84 ~~Lk~~GI~~VInL~~~~e~~~~~~~~~~~gi~yl~iP-~~D~~~~p~---------~~~l~~a~~~I~~~~~~g~~VLV 153 (323)
+.|+++||..+|.+...........+.+..++..+.+| +-|++.... .+...++++-|+...+..+++.|
T Consensus 88 ~~l~~~gId~LvvIGGDgS~~gA~~Lae~~~i~vVGvPkTIDNDi~~td~tiGfdTA~~~~~eaid~l~dtassh~r~~i 167 (347)
T COG0205 88 ENLKKLGIDALVVIGGDGSYTGAALLAEEGGIPVVGVPKTIDNDISGTDFTIGFDTALETAVEAIDNLRDTASSHERIFI 167 (347)
T ss_pred HHHHHcCCCEEEEECCCChHHHHHHHHHhcCCcEEecCCCccCCCcccccCccHHHHHHHHHHHHHHHHHHHhCcCCEEE
Confidence 35799999999999887543222223334449999999 334432221 34445555555555556788999
Q ss_pred EcCCCCCchH
Q 020662 154 HCKAGRGRST 163 (323)
Q Consensus 154 HC~~G~gRSg 163 (323)
+=..|++-+=
T Consensus 168 veVMGR~aG~ 177 (347)
T COG0205 168 VEVMGRHAGW 177 (347)
T ss_pred EEecCcChhH
Confidence 9899975443
No 116
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=25.35 E-value=3.7e+02 Score=26.94 Aligned_cols=113 Identities=16% Similarity=0.284 Sum_probs=66.4
Q ss_pred HhcCccEEEEcCCCCCccCCccccccCCcEEEEEeCCCCCCCCcH------------HHHHHHHHHHHHHhcCC-CeEEE
Q 020662 87 KELGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTRDYLFAPSF------------ADICQAVDFIHENASLG-KTTYV 153 (323)
Q Consensus 87 k~~GI~~VInL~~~~e~~~~~~~~~~~gi~yl~iP~~D~~~~p~~------------~~l~~a~~~I~~~~~~g-~~VLV 153 (323)
.++|..+|.+|........ .+..=+....+|+. +.|.. -.-+.+++.|.++..+| --+-|
T Consensus 87 ~~~GADtiMDLStGgdl~~----iR~~il~~s~vpvG---TVPiYqa~~~~~~~~~~mt~d~~~~~ie~qa~dGVDfmTi 159 (423)
T TIGR00190 87 IKYGADTVMDLSTGGDLDE----IRKAILDAVPVPVG---TVPIYQAAEKVHGAVEDMDEDDMFRAIEKQAKDGVDFMTI 159 (423)
T ss_pred HHcCCCeEeeccCCCCHHH----HHHHHHHcCCCCcc---CccHHHHHHHhcCChhhCCHHHHHHHHHHHHHhCCCEEEE
Confidence 4699999999987643211 11111222233332 12222 12355666777777765 46889
Q ss_pred EcC-----------CC-----CCchHHHHHHHHHHhcCC-C----HHHHHHHHHH----------hCCCCCCCHHHHHHH
Q 020662 154 HCK-----------AG-----RGRSTTIVLCYLVEHRQM-A----PEAAYEYVRS----------IRPRVLLASSQWQAV 202 (323)
Q Consensus 154 HC~-----------~G-----~gRSgtvv~aYLm~~~g~-s----~~~A~~~vr~----------~Rp~i~~~~~q~~~L 202 (323)
||. .| +||-|++.++|++.+..- . +++.++..+. .||+.........|+
T Consensus 160 H~Gi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~~~~ENPlye~fD~lLeI~~~yDVtlSLGDglRPG~i~DA~D~aQi 239 (423)
T TIGR00190 160 HAGVLLEYVERLKRSGRITGIVSRGGAILAAWMLHHHKENPLYKNFDYILEIAKEYDVTLSLGDGLRPGCIADATDRAQI 239 (423)
T ss_pred ccchhHHHHHHHHhCCCccCeecCcHHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCeeeeccCCcCCCccccCCcHHHH
Confidence 995 11 589999999999986554 2 4445555544 789887765444444
Q ss_pred HHHH
Q 020662 203 QDYY 206 (323)
Q Consensus 203 ~~~~ 206 (323)
+++.
T Consensus 240 ~El~ 243 (423)
T TIGR00190 240 SELI 243 (423)
T ss_pred HHHH
Confidence 4443
No 117
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=25.13 E-value=1.7e+02 Score=24.09 Aligned_cols=36 Identities=31% Similarity=0.385 Sum_probs=25.5
Q ss_pred cHHHHHHHHHHHHHHhcCCCeEEEEcCCCCCchHHHHHH
Q 020662 130 SFADICQAVDFIHENASLGKTTYVHCKAGRGRSTTIVLC 168 (323)
Q Consensus 130 ~~~~l~~a~~~I~~~~~~g~~VLVHC~~G~gRSgtvv~a 168 (323)
..+.+.++.+.+.+.+.+|++|++. |.|-|+.++.-
T Consensus 17 ~~~~i~~aa~~i~~~~~~gg~i~~~---G~G~S~~~a~~ 52 (138)
T PF13580_consen 17 QAEAIEKAADLIAEALRNGGRIFVC---GNGHSAAIASH 52 (138)
T ss_dssp SHHHHHHHHHHHHHHHHTT--EEEE---ESTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEE---cCchhhhHHHH
Confidence 3577889999999999998888884 55567666543
No 118
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=24.88 E-value=63 Score=25.78 Aligned_cols=18 Identities=28% Similarity=0.529 Sum_probs=13.0
Q ss_pred CeEEEEcCCCCCchHHHHHH
Q 020662 149 KTTYVHCKAGRGRSTTIVLC 168 (323)
Q Consensus 149 ~~VLVHC~~G~gRSgtvv~a 168 (323)
++||+-|.+|. |+++++-
T Consensus 2 kkILlvCg~G~--STSlla~ 19 (104)
T PRK09590 2 KKALIICAAGM--SSSMMAK 19 (104)
T ss_pred cEEEEECCCch--HHHHHHH
Confidence 47999999999 4444443
No 119
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=24.65 E-value=4e+02 Score=24.67 Aligned_cols=112 Identities=13% Similarity=0.038 Sum_probs=67.4
Q ss_pred HHHHhcCccEEEEcCCCCCccCCc-------cccccCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEcC
Q 020662 84 LRLKELGVSGVVTLNESYETLVPT-------SLYHDHNIDHLVIPTRDYLFAPSFADICQAVDFIHENASLGKTTYVHCK 156 (323)
Q Consensus 84 ~~Lk~~GI~~VInL~~~~e~~~~~-------~~~~~~gi~yl~iP~~D~~~~p~~~~l~~a~~~I~~~~~~g~~VLVHC~ 156 (323)
+..++.|+...+++..... ++. ....+.|...+.++ |....-.+..+.+.+..+.+....+-++-+||.
T Consensus 116 ~~ak~~G~~v~~~~~~a~~--~~~~~~~~~~~~~~~~g~~~i~l~--DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~H 191 (266)
T cd07944 116 KAIKEKGYEVFFNLMAISG--YSDEELLELLELVNEIKPDVFYIV--DSFGSMYPEDIKRIISLLRSNLDKDIKLGFHAH 191 (266)
T ss_pred HHHHHCCCeEEEEEEeecC--CCHHHHHHHHHHHHhCCCCEEEEe--cCCCCCCHHHHHHHHHHHHHhcCCCceEEEEeC
Confidence 4457899998888876543 221 12345677766666 544466788889888888877654578999998
Q ss_pred CCCCchHHHHHHHHHH---------------hcCCCHHHHHHHHHHhCCCCCCCHHHHH
Q 020662 157 AGRGRSTTIVLCYLVE---------------HRQMAPEAAYEYVRSIRPRVLLASSQWQ 200 (323)
Q Consensus 157 ~G~gRSgtvv~aYLm~---------------~~g~s~~~A~~~vr~~Rp~i~~~~~q~~ 200 (323)
.-.|=+.+-+.+-+-. ..+.+.++.+..++... ....+.....
T Consensus 192 n~~Gla~AN~laA~~aGa~~vd~s~~G~G~~aGN~~~E~~v~~l~~~~-~~~~dl~~l~ 249 (266)
T cd07944 192 NNLQLALANTLEAIELGVEIIDATVYGMGRGAGNLPTELLLDYLNNKF-GKKYNLEPVL 249 (266)
T ss_pred CCccHHHHHHHHHHHcCCCEEEEecccCCCCcCcHHHHHHHHHHHHhh-ccCCCHHHHH
Confidence 7666554444333221 11235666666666653 2334444433
No 120
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=23.38 E-value=1.3e+02 Score=23.35 Aligned_cols=31 Identities=13% Similarity=0.037 Sum_probs=18.7
Q ss_pred hcCCCeEEEEcCCCCCchHHHHHHHHHHhcCC
Q 020662 145 ASLGKTTYVHCKAGRGRSTTIVLCYLVEHRQM 176 (323)
Q Consensus 145 ~~~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~ 176 (323)
+..+.+|+|+|..|....+..++ ..++..|.
T Consensus 61 i~~~~~vvvyc~~g~~~~s~~~a-~~l~~~G~ 91 (110)
T cd01521 61 LDKEKLFVVYCDGPGCNGATKAA-LKLAELGF 91 (110)
T ss_pred CCCCCeEEEEECCCCCchHHHHH-HHHHHcCC
Confidence 34578999999988633333333 33444565
No 121
>COG3673 Uncharacterized conserved protein [Function unknown]
Probab=22.03 E-value=4.6e+02 Score=25.77 Aligned_cols=68 Identities=18% Similarity=0.178 Sum_probs=51.9
Q ss_pred CcHHHHHHHHHHHHHHhcCCCeEEEEcCCCCCchHHHH--HHHHHHhcCC-------CHHHHHHHHHHhCCCCCCCHHHH
Q 020662 129 PSFADICQAVDFIHENASLGKTTYVHCKAGRGRSTTIV--LCYLVEHRQM-------APEAAYEYVRSIRPRVLLASSQW 199 (323)
Q Consensus 129 p~~~~l~~a~~~I~~~~~~g~~VLVHC~~G~gRSgtvv--~aYLm~~~g~-------s~~~A~~~vr~~Rp~i~~~~~q~ 199 (323)
.+.+.++.+..|+-.+..-|-.||.. |.+|-+..+ .|-++++-|+ -+++|+++++.+-+...|+..+.
T Consensus 102 gL~~nI~~AYrFL~~~yepGD~Iy~F---GFSRGAf~aRVlagmir~vGlls~~~~~~~d~Aw~~y~~r~~~~dp~~~~~ 178 (423)
T COG3673 102 GLVQNIREAYRFLIFNYEPGDEIYAF---GFSRGAFSARVLAGMIRHVGLLSRKHAARIDEAWAHYRQRLSGLDPEGQKV 178 (423)
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEe---eccchhHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhcCCCChhhhhh
Confidence 45688999999999999989999986 999987654 3334444443 37899999998888877776544
No 122
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=21.95 E-value=5.8e+02 Score=22.83 Aligned_cols=76 Identities=13% Similarity=0.141 Sum_probs=49.8
Q ss_pred HHHHhcCccEEEEcCCCCCccCCc-------cccccCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEcC
Q 020662 84 LRLKELGVSGVVTLNESYETLVPT-------SLYHDHNIDHLVIPTRDYLFAPSFADICQAVDFIHENASLGKTTYVHCK 156 (323)
Q Consensus 84 ~~Lk~~GI~~VInL~~~~e~~~~~-------~~~~~~gi~yl~iP~~D~~~~p~~~~l~~a~~~I~~~~~~g~~VLVHC~ 156 (323)
..+++.|+...+++..-.....+. ....+.|...+.++ |......+..+.+.+..+.+.... .++-+||.
T Consensus 122 ~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~--Dt~G~~~P~~v~~li~~l~~~~~~-~~~~~H~H 198 (265)
T cd03174 122 EAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLK--DTVGLATPEEVAELVKALREALPD-VPLGLHTH 198 (265)
T ss_pred HHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEec--hhcCCcCHHHHHHHHHHHHHhCCC-CeEEEEeC
Confidence 355889999999995443210111 23446777777765 433456788889888888877654 78888887
Q ss_pred CCCCch
Q 020662 157 AGRGRS 162 (323)
Q Consensus 157 ~G~gRS 162 (323)
.-.|=.
T Consensus 199 n~~gla 204 (265)
T cd03174 199 NTLGLA 204 (265)
T ss_pred CCCChH
Confidence 655433
No 123
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=21.48 E-value=1.2e+02 Score=28.52 Aligned_cols=41 Identities=10% Similarity=0.289 Sum_probs=25.6
Q ss_pred cccccCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEcC
Q 020662 108 SLYHDHNIDHLVIPTRDYLFAPSFADICQAVDFIHENASLGKTTYVHCK 156 (323)
Q Consensus 108 ~~~~~~gi~yl~iP~~D~~~~p~~~~l~~a~~~I~~~~~~g~~VLVHC~ 156 (323)
.+|++.|+.|+ -|+.++ .. ++.++.+.......+||+||..
T Consensus 229 ~lFe~LG~~Y~-GPiDGH----dl---~~Li~~l~~~K~~~gPvllHV~ 269 (270)
T PF13292_consen 229 NLFEELGFDYI-GPIDGH----DL---EELIEVLENAKDIDGPVLLHVI 269 (270)
T ss_dssp CCCHHCT-EEE-EEEETT-----H---HHHHHHHHHHCCSSSEEEEEEE
T ss_pred HHHHHcCCeEE-eccCCC----CH---HHHHHHHHHHhcCCCCEEEEEe
Confidence 67889999985 455543 23 3444444445455799999974
No 124
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=21.34 E-value=1.9e+02 Score=22.39 Aligned_cols=28 Identities=18% Similarity=0.237 Sum_probs=18.7
Q ss_pred cCCCeEEEEcCCCCCchHHHHHHHHHHhcCC
Q 020662 146 SLGKTTYVHCKAGRGRSTTIVLCYLVEHRQM 176 (323)
Q Consensus 146 ~~g~~VLVHC~~G~gRSgtvv~aYLm~~~g~ 176 (323)
..+.+|+++|..|. ||..+ ++.++..|.
T Consensus 76 ~~~~~iv~yc~~g~-~s~~~--~~~l~~~G~ 103 (118)
T cd01449 76 TPDKPVIVYCGSGV-TACVL--LLALELLGY 103 (118)
T ss_pred CCCCCEEEECCcHH-HHHHH--HHHHHHcCC
Confidence 35689999999884 66543 444555565
No 125
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=21.34 E-value=3.8e+02 Score=26.92 Aligned_cols=115 Identities=16% Similarity=0.249 Sum_probs=66.9
Q ss_pred HhcCccEEEEcCCCCCccCCccccccCCcEEEEEeCCCCCCCCcH---------------HHHHHHHHHHHHHhcCC-Ce
Q 020662 87 KELGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTRDYLFAPSF---------------ADICQAVDFIHENASLG-KT 150 (323)
Q Consensus 87 k~~GI~~VInL~~~~e~~~~~~~~~~~gi~yl~iP~~D~~~~p~~---------------~~l~~a~~~I~~~~~~g-~~ 150 (323)
.++|..+|.+|........ .+..=+....+|+. +.|.. -.-+.+++.|.++..+| --
T Consensus 87 ~~~GADtiMDLStggdl~~----iR~~il~~s~vpvG---TVPiYqa~~~~~~k~~~~~~mt~d~~~~~ie~qa~~GVDf 159 (431)
T PRK13352 87 VKYGADTIMDLSTGGDLDE----IRRAIIEASPVPVG---TVPIYQAAVEAARKYGSVVDMTEDDLFDVIEKQAKDGVDF 159 (431)
T ss_pred HHcCCCeEeeccCCCCHHH----HHHHHHHcCCCCCc---ChhHHHHHHHHHhcCCChhhCCHHHHHHHHHHHHHhCCCE
Confidence 4699999999987643211 11111222223322 12222 22345566677777665 46
Q ss_pred EEEEcC---------------CC-CCchHHHHHHHHHHhcCC-----CHHHHHHHHHH----------hCCCCCCCH---
Q 020662 151 TYVHCK---------------AG-RGRSTTIVLCYLVEHRQM-----APEAAYEYVRS----------IRPRVLLAS--- 196 (323)
Q Consensus 151 VLVHC~---------------~G-~gRSgtvv~aYLm~~~g~-----s~~~A~~~vr~----------~Rp~i~~~~--- 196 (323)
+-|||. .| +||-|++.++|++.+..- .+++.++..+. .||+.....
T Consensus 160 mTiHcGi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~n~~ENPlye~fD~lLeI~~~yDVtlSLGDglRPG~i~Da~D~ 239 (431)
T PRK13352 160 MTIHCGVTRETLERLKKSGRIMGIVSRGGSFLAAWMLHNNKENPLYEHFDYLLEILKEYDVTLSLGDGLRPGCIADATDR 239 (431)
T ss_pred EEEccchhHHHHHHHHhcCCccCeecCCHHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCeeeeccCCcCCCccccCCcH
Confidence 889994 12 589999999999986544 24455555554 689887655
Q ss_pred HHHHHHHHHHHH
Q 020662 197 SQWQAVQDYYLQ 208 (323)
Q Consensus 197 ~q~~~L~~~~~~ 208 (323)
.|+.-|....++
T Consensus 240 aQi~El~~lgeL 251 (431)
T PRK13352 240 AQIQELITLGEL 251 (431)
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 126
>PRK14071 6-phosphofructokinase; Provisional
Probab=21.24 E-value=4.7e+02 Score=25.57 Aligned_cols=85 Identities=14% Similarity=0.138 Sum_probs=49.0
Q ss_pred HHHHHhcCccEEEEcCCCCCccCCccccccCCcEEEEEeCC-CCCCCC------cHHHHHHHHHHHHHHhc---CCCeEE
Q 020662 83 VLRLKELGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTR-DYLFAP------SFADICQAVDFIHENAS---LGKTTY 152 (323)
Q Consensus 83 ~~~Lk~~GI~~VInL~~~~e~~~~~~~~~~~gi~yl~iP~~-D~~~~p------~~~~l~~a~~~I~~~~~---~g~~VL 152 (323)
.+.|++++|+++|-+...........+.+..+|..+.+|-. |++.+. -...++.+.+.|+.... ...+|+
T Consensus 100 ~~~l~~~~Id~Li~IGGdgS~~~a~~L~~~~~i~vIgiPkTIDNDl~~td~t~Gf~TA~~~~~~~id~i~~ta~s~~rv~ 179 (360)
T PRK14071 100 IDGYHSLGLDALIGIGGDGSLAILRRLAQQGGINLVGIPKTIDNDVGATEVSIGFDTAVNIATEALDRLHFTAASHNRVM 179 (360)
T ss_pred HHHHHHcCCCEEEEECChhHHHHHHHHHHhcCCcEEEecccccCCCcCcccCcChhHHHHHHHHHHHHHHhhhcccCCEE
Confidence 45678999999999987643211122233348999999943 432211 12333444444444332 345788
Q ss_pred EEcCCCCCchHHHHHH
Q 020662 153 VHCKAGRGRSTTIVLC 168 (323)
Q Consensus 153 VHC~~G~gRSgtvv~a 168 (323)
|.=..|. .+|-++++
T Consensus 180 ivEvMGR-~~G~LAl~ 194 (360)
T PRK14071 180 ILEVMGR-DAGHIALA 194 (360)
T ss_pred EEEECCC-CccHHHHH
Confidence 8888886 45555443
No 127
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=21.09 E-value=95 Score=24.73 Aligned_cols=14 Identities=43% Similarity=0.788 Sum_probs=11.7
Q ss_pred CeEEEEcCCCCCch
Q 020662 149 KTTYVHCKAGRGRS 162 (323)
Q Consensus 149 ~~VLVHC~~G~gRS 162 (323)
++||+-|.+|.|=|
T Consensus 4 kkIllvC~~G~sTS 17 (106)
T PRK10499 4 KHIYLFCSAGMSTS 17 (106)
T ss_pred CEEEEECCCCccHH
Confidence 68999999999733
No 128
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=21.08 E-value=2.7e+02 Score=27.84 Aligned_cols=122 Identities=14% Similarity=0.126 Sum_probs=61.8
Q ss_pred HhcCccEEEEcCCCCCccCC-ccccccCCcEEEEEeCCCC----CCCCcHHHHHHHHHHHHHHhcCC-CeEEEEcCC---
Q 020662 87 KELGVSGVVTLNESYETLVP-TSLYHDHNIDHLVIPTRDY----LFAPSFADICQAVDFIHENASLG-KTTYVHCKA--- 157 (323)
Q Consensus 87 k~~GI~~VInL~~~~e~~~~-~~~~~~~gi~yl~iP~~D~----~~~p~~~~l~~a~~~I~~~~~~g-~~VLVHC~~--- 157 (323)
.++|-.+|.+|........- ....+...+-.=.+|+-.- ......-.-+.+++.|.++..+| --+-|||..
T Consensus 86 ~~~GADtvMDLStggdl~~iR~~il~~~~vpvGTVPiYqa~~~~~~~~~~~t~d~~~~~ie~qa~~GVDfmtiH~git~~ 165 (420)
T PF01964_consen 86 EKAGADTVMDLSTGGDLDEIRRAILENSPVPVGTVPIYQAAIRKGGSIVDMTEDDFFDVIEKQAKDGVDFMTIHCGITRE 165 (420)
T ss_dssp HHTT-SEEEE---STTHHHHHHHHHHT-SS-EEE-HHHHHHHHTTT-GGG--HHHHHHHHHHHHHHT--EEEE-TT--GG
T ss_pred HHhCCCEEEEcCCCCCHHHHHHHHHHhCCCccccchHHHHHHHhCCChhhCCHHHHHHHHHHHHHcCCCEEEEccchhHH
Confidence 57999999999876432111 1122222233334443211 01223334467777888887765 468999951
Q ss_pred -------------CCCchHHHHHHHHHHhcCC-----CHHHHHHHHHH----------hCCCCCCCH---HHHHHHHHHH
Q 020662 158 -------------GRGRSTTIVLCYLVEHRQM-----APEAAYEYVRS----------IRPRVLLAS---SQWQAVQDYY 206 (323)
Q Consensus 158 -------------G~gRSgtvv~aYLm~~~g~-----s~~~A~~~vr~----------~Rp~i~~~~---~q~~~L~~~~ 206 (323)
=+||.|++.++|++++..- .+++.++..|. .||+..... .|+.-|....
T Consensus 166 ~~~~~~~~~R~~giVSRGGs~l~~WM~~n~~ENPly~~fD~lLeI~k~yDVtLSLGDglRPG~i~Da~D~aQi~EL~~lg 245 (420)
T PF01964_consen 166 TLERLKKSGRIMGIVSRGGSILAAWMLHNGKENPLYEHFDRLLEIAKEYDVTLSLGDGLRPGCIADATDRAQIQELIILG 245 (420)
T ss_dssp GGGGGT--TSSS----HHHHHHHHHHHHHTS--HHHHTHHHHHHHHTTTT-EEEE--TT--SSGGGTT-HHHHHHHHHHH
T ss_pred HHHHHhhhccccCccccchHHHHHHHHhcCCcCcHHHhHHHHHHHHHHhCeeEecccccCCCCcCCCCcHHHHHHHHHHH
Confidence 2589999999999986554 35566666654 789887655 4555555444
Q ss_pred HH
Q 020662 207 LQ 208 (323)
Q Consensus 207 ~~ 208 (323)
++
T Consensus 246 eL 247 (420)
T PF01964_consen 246 EL 247 (420)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 129
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=20.89 E-value=2.1e+02 Score=28.11 Aligned_cols=15 Identities=33% Similarity=0.596 Sum_probs=11.7
Q ss_pred hcCCCeEEEEcCCCC
Q 020662 145 ASLGKTTYVHCKAGR 159 (323)
Q Consensus 145 ~~~g~~VLVHC~~G~ 159 (323)
+..|..||.||.+|.
T Consensus 164 I~dg~~ILThcnsg~ 178 (363)
T PRK05772 164 LNDGDTVLTQCNAGG 178 (363)
T ss_pred cCCCCEEEEecCCcc
Confidence 346788999998873
No 130
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=20.75 E-value=1e+02 Score=28.98 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=19.7
Q ss_pred CCCCchHHHHHHHHHHhcCCCHHHHHHH
Q 020662 157 AGRGRSTTIVLCYLVEHRQMAPEAAYEY 184 (323)
Q Consensus 157 ~G~gRSgtvv~aYLm~~~g~s~~~A~~~ 184 (323)
-|.||||+-+.+-|. .|.+.+.|.++
T Consensus 165 PG~SRSGaTI~~~ll--lG~~r~~Aaef 190 (270)
T COG1968 165 PGTSRSGATISGGLL--LGLSREAAAEF 190 (270)
T ss_pred CCCCccHHHHHHHHH--cCCCHHHHHHH
Confidence 599999987777665 48887777654
Done!