BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020665
         (323 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4A01|A Chain A, Crystal Structure Of The H-Translocating Pyrophosphatase
 pdb|4A01|B Chain B, Crystal Structure Of The H-Translocating Pyrophosphatase
          Length = 766

 Score = 28.1 bits (61), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 7/66 (10%)

Query: 119 YYYTQWTCTFTAIY-FGLG-SSLSMYG-----CYQYHKSLGGDKVDNVEGDAEQGICATP 171
           YY   W   F AI  +GLG SS++++G      Y     +G D V  VE +  +     P
Sbjct: 215 YYGDDWGGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNP 274

Query: 172 AVLGES 177
           AV+ ++
Sbjct: 275 AVIADN 280


>pdb|1K2F|A Chain A, Siah, Seven In Absentia Homolog
 pdb|1K2F|B Chain B, Siah, Seven In Absentia Homolog
          Length = 190

 Score = 27.7 bits (60), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 6/103 (5%)

Query: 141 MYGCYQYHKSLGGDKVDNVEGDAEQGICATPAVLGESSNSSAKHTSSREEFNARRPAGFW 200
           M  C+ +H  L  +K +  +G   Q   A   ++G  +   A++ + R E N  R    W
Sbjct: 89  MQSCFGFHFMLVLEKQEKYDG--HQQFFAIVQLIG--TRKQAENFAYRLELNGHRRRLTW 144

Query: 201 GYVFQIIFQMNAGAVLLTDCVFWFIIVP--FLEIKNYSLNVLV 241
               + I +  A A++ +DC+ +   +   F E  N  +NV +
Sbjct: 145 EATPRSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTI 187


>pdb|2AN6|A Chain A, Protein-Peptide Complex
 pdb|2AN6|B Chain B, Protein-Peptide Complex
 pdb|2AN6|C Chain C, Protein-Peptide Complex
 pdb|2AN6|D Chain D, Protein-Peptide Complex
          Length = 191

 Score = 27.7 bits (60), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 6/103 (5%)

Query: 141 MYGCYQYHKSLGGDKVDNVEGDAEQGICATPAVLGESSNSSAKHTSSREEFNARRPAGFW 200
           M  C+ +H  L  +K +  +G   Q   A   ++G  +   A++ + R E N  R    W
Sbjct: 90  MQSCFGFHFMLVLEKQEKYDG--HQQFFAIVQLIG--TRKQAENFAYRLELNGHRRRLTW 145

Query: 201 GYVFQIIFQMNAGAVLLTDCVFWFIIVP--FLEIKNYSLNVLV 241
               + I +  A A++ +DC+ +   +   F E  N  +NV +
Sbjct: 146 EATPRSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTI 188


>pdb|2A25|A Chain A, Crystal Structure Of Siah1 Sbd Bound To The Peptide
           Ekpaavvapittg From Sip
          Length = 193

 Score = 27.7 bits (60), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 6/103 (5%)

Query: 141 MYGCYQYHKSLGGDKVDNVEGDAEQGICATPAVLGESSNSSAKHTSSREEFNARRPAGFW 200
           M  C+ +H  L  +K +  +G   Q   A   ++G  +   A++ + R E N  R    W
Sbjct: 92  MQSCFGFHFMLVLEKQEKYDG--HQQFFAIVQLIG--TRKQAENFAYRLELNGHRRRLTW 147

Query: 201 GYVFQIIFQMNAGAVLLTDCVFWFIIVP--FLEIKNYSLNVLV 241
               + I +  A A++ +DC+ +   +   F E  N  +NV +
Sbjct: 148 EATPRSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTI 190


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.139    0.483 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,522,212
Number of Sequences: 62578
Number of extensions: 350533
Number of successful extensions: 637
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 637
Number of HSP's gapped (non-prelim): 4
length of query: 323
length of database: 14,973,337
effective HSP length: 99
effective length of query: 224
effective length of database: 8,778,115
effective search space: 1966297760
effective search space used: 1966297760
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)