BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020665
         (323 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P21616|AVP_VIGRR Pyrophosphate-energized vacuolar membrane proton pump OS=Vigna
           radiata var. radiata PE=1 SV=3
          Length = 765

 Score = 38.9 bits (89), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 18/108 (16%)

Query: 84  RGVHPAWLLAFR-------VLAFAVLLILLVATALFDGGSIFYYYTQWTCTFTAIY-FGL 135
           +GV  A++ AFR       +LA   LL+L +A  LF      YY   W   F AI  +GL
Sbjct: 177 KGVGKAFITAFRSGAVMGFLLAANGLLVLYIAINLFK----IYYGDDWGGLFEAITGYGL 232

Query: 136 G-SSLSMYG-----CYQYHKSLGGDKVDNVEGDAEQGICATPAVLGES 177
           G SS++++G      Y     +G D V  VE +  +     PAV+ ++
Sbjct: 233 GGSSMALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADN 280


>sp|Q06572|AVP_HORVU Pyrophosphate-energized vacuolar membrane proton pump OS=Hordeum
           vulgare PE=2 SV=2
          Length = 762

 Score = 33.1 bits (74), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 18/108 (16%)

Query: 84  RGVHPAWLLAFR-------VLAFAVLLILLVATALFDGGSIFYYYTQWTCTFTAIY-FGL 135
           +GV  A++ AFR       +L+ + L++L +   +F      YY   W   F +I  +GL
Sbjct: 173 KGVGKAFITAFRSGAVMGFLLSSSGLVVLYITINVFK----MYYGDDWEGLFESITGYGL 228

Query: 136 G-SSLSMYG-----CYQYHKSLGGDKVDNVEGDAEQGICATPAVLGES 177
           G SS++++G      Y     +G D V  VE +  +     PAV+ ++
Sbjct: 229 GGSSMALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADN 276


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.328    0.140    0.481 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,449,959
Number of Sequences: 539616
Number of extensions: 4653392
Number of successful extensions: 11831
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 11830
Number of HSP's gapped (non-prelim): 7
length of query: 323
length of database: 191,569,459
effective HSP length: 117
effective length of query: 206
effective length of database: 128,434,387
effective search space: 26457483722
effective search space used: 26457483722
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 61 (28.1 bits)