Query 020665
Match_columns 323
No_of_seqs 115 out of 131
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 04:11:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020665.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020665hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04750 Far-17a_AIG1: FAR-17a 99.4 1.2E-12 2.6E-17 117.9 12.1 150 114-316 31-189 (201)
2 KOG3989 Beta-2-glycoprotein I 98.1 1.9E-05 4.1E-10 73.4 9.1 153 113-317 37-198 (224)
3 KOG4740 Uncharacterized conser 39.2 2.2E+02 0.0049 30.3 9.8 104 32-149 300-404 (564)
4 PF12841 YvrJ: YvrJ protein fa 31.5 20 0.00044 24.5 0.6 18 37-54 6-23 (38)
5 PF12942 Archaeal_AmoA: Archae 28.4 1.6 3.4E-05 39.2 -6.8 30 118-147 15-44 (183)
6 COG1755 Uncharacterized protei 25.5 1.7E+02 0.0036 26.5 5.4 51 241-291 45-95 (172)
7 PF03092 BT1: BT1 family; Int 20.6 3.2E+02 0.007 27.4 7.1 38 112-149 234-277 (433)
8 PF11669 WBP-1: WW domain-bind 18.2 1.1E+02 0.0024 25.1 2.6 27 118-144 16-42 (102)
9 PF05399 EVI2A: Ectropic viral 17.7 1.9E+02 0.0042 27.2 4.3 12 30-41 130-141 (227)
10 PF13903 Claudin_2: PMP-22/EMP 16.2 6.3E+02 0.014 20.9 9.2 53 33-88 3-55 (172)
No 1
>PF04750 Far-17a_AIG1: FAR-17a/AIG1-like protein; InterPro: IPR006838 This entry includes the hamster androgen-induced FAR-17a protein (Q60534 from SWISSPROT) []. The function of these proteins is unknown but it is thought to have a central role in the fusion process during myogenesis, within the somatic mesoderm. This entry also includes homologous regions from a number of other metazoan proteins.; GO: 0016021 integral to membrane
Probab=99.43 E-value=1.2e-12 Score=117.88 Aligned_cols=150 Identities=24% Similarity=0.389 Sum_probs=106.6
Q ss_pred CCeEEEEechhhHHHHHHHHHHHHHHHHHhhhhhhccCCCCcccCcCCccccccccCCCccCCCCCCccCCCCchhhhcc
Q 020665 114 GGSIFYYYTQWTCTFTAIYFGLGSSLSMYGCYQYHKSLGGDKVDNVEGDAEQGICATPAVLGESSNSSAKHTSSREEFNA 193 (323)
Q Consensus 114 g~~~F~YyT~Wtf~LvtiYF~lgs~~S~~gc~~~~~~~~~~~v~~~~~D~e~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 193 (323)
-|+-|.|+|+|+..+.++||+++.+... +++ + +.
T Consensus 31 ~gg~~~fLT~~~~~~~~~~~~~~~~~d~------~~~---~----------------------------~l--------- 64 (201)
T PF04750_consen 31 YGGRFKFLTNWSLVLQTIYFILALLCDL------FSS---R----------------------------KL--------- 64 (201)
T ss_pred hcCcceehhHHHHHHHHHHHHHHHHHHh------ccc---H----------------------------HH---------
Confidence 4577899999999999999998888876 100 0 00
Q ss_pred cCCcchhhHHHHHHHHHhhhhhhheeeeeeeeee--cccccc-ccc--c-chhhhhhhhHHHHHHHHHhhhccCCCc--c
Q 020665 194 RRPAGFWGYVFQIIFQMNAGAVLLTDCVFWFIIV--PFLEIK-NYS--L-NVLVINMHTINAVLLLGDAALNCLRFP--M 265 (323)
Q Consensus 194 r~~ag~wg~~~qilfqt~aga~~LtdiVfW~iL~--Pfl~~~-~~~--l-nflni~~HslNaVflLiD~~Ln~lPfp--~ 265 (323)
++ . .-+.+++++....++++++||++.. |-+-.+ ... . ..+|.++|++|++++++|..+.+.+.| .
T Consensus 65 ~~----~--~~~~~~~~~~pl~~~V~~~yW~l~~~dp~lv~p~~~~~~ip~wln~~~H~~~~i~llid~~~~~~~~~~~~ 138 (201)
T PF04750_consen 65 RK----L--RDWLFYSLAFPLEFIVTVVYWSLYLIDPELVFPKWLDNVIPLWLNHSMHTLPLIFLLIDLFLFKHRYPSRK 138 (201)
T ss_pred HH----H--HHHHHHHHHHHHHhcchhhhhhHHhCCHHhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchH
Confidence 00 0 1236677888889999999999642 211112 111 2 368999999999999999999885554 4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhccccceeeeccCCCCCC-ccHHHHHHhhhc
Q 020665 266 FRIAYFFLWTVTYVIVQWAVHACVKIWWAYPFLDLSSPY-APLWCVQCLRNN 316 (323)
Q Consensus 266 fh~~Y~vlwt~~YviF~wI~Ha~g~~~wpYpFLD~~~p~-AplwY~~~a~~h 316 (323)
.++......+.+|.++....+...| .|||||||..+|. ..+.|.+..++.
T Consensus 139 ~~~~~~~~~~~~Y~~~~~~~~~~~g-~wpYPfl~~~~~~~~~~~~~~~~~~~ 189 (201)
T PF04750_consen 139 KALLISFAFGLAYIIWIEYIYYVNG-FWPYPFLDVLSPPGRVVFFAVSFLLA 189 (201)
T ss_pred HHHHHHHHHHHHHHhheeEEEeCCC-eeCCCCcCCCCcchhheehHHHHHHH
Confidence 4777788888999988777766644 9999999986665 455666555543
No 2
>KOG3989 consensus Beta-2-glycoprotein I [Extracellular structures]
Probab=98.07 E-value=1.9e-05 Score=73.42 Aligned_cols=153 Identities=16% Similarity=0.207 Sum_probs=108.0
Q ss_pred cCCeEEEEechhhHHHHHHHHHHHHHHHHHhhhhhhccCCCCcccCcCCccccccccCCCccCCCCCCccCCCCchhhhc
Q 020665 113 DGGSIFYYYTQWTCTFTAIYFGLGSSLSMYGCYQYHKSLGGDKVDNVEGDAEQGICATPAVLGESSNSSAKHTSSREEFN 192 (323)
Q Consensus 113 ~g~~~F~YyT~Wtf~LvtiYF~lgs~~S~~gc~~~~~~~~~~~v~~~~~D~e~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 192 (323)
..|+-|.|+|--...+-.+|.++|.+.-.- ..+++.
T Consensus 37 ~~gg~f~ylT~i~l~lq~i~~~v~~~~dv~---g~~~~~----------------------------------------- 72 (224)
T KOG3989|consen 37 LNGGKFKYLTFIDLILQIIYYVVGLLNDVV---GRNSLT----------------------------------------- 72 (224)
T ss_pred hcCCceehHHHHHHHHHHHHHHHHHHHHHh---ccCccc-----------------------------------------
Confidence 367789999999999999999888877663 111100
Q ss_pred ccCCcchhhHHHHHHHHHhhhhhhheeeeeeee-------eeccccccccccchhhhhhhhHHHHHHHHHhhhcc--CCC
Q 020665 193 ARRPAGFWGYVFQIIFQMNAGAVLLTDCVFWFI-------IVPFLEIKNYSLNVLVINMHTINAVLLLGDAALNC--LRF 263 (323)
Q Consensus 193 ~r~~ag~wg~~~qilfqt~aga~~LtdiVfW~i-------L~Pfl~~~~~~lnflni~~HslNaVflLiD~~Ln~--lPf 263 (323)
.+....+ ..+-.+....+.++++||++ |+|-..+.. ..+.+|-.+|..-.+|+++|..... .|.
T Consensus 73 ~~~i~D~------l~~tlafPv~~~V~~~FW~Ly~~d~~Li~p~~l~~~-~p~wlnh~~Ht~~i~~~lld~~~~~~~~p~ 145 (224)
T KOG3989|consen 73 LHIIRDY------LAATLAFPVEVIVTVLFWGLYLYDRELLMPKVLDMV-IPSWLNHGLHTYPIPFILLDLYISGHTYPS 145 (224)
T ss_pred hhhhHHH------HHHHHhchHHHhhhhhhhhheeecHHHcCchhhhhc-CchhhhhHHHHHHHHHHHHHHHHhCCCCcc
Confidence 0000111 22334556678899999976 444322222 3377899999999999999999986 777
Q ss_pred cchHHHHHHHHHHHHHHHHHhhhhccccceeeeccCCCCCCccHHHHHHhhhcc
Q 020665 264 PMFRIAYFFLWTVTYVIVQWAVHACVKIWWAYPFLDLSSPYAPLWCVQCLRNNI 317 (323)
Q Consensus 264 p~fh~~Y~vlwt~~YviF~wI~Ha~g~~~wpYpFLD~~~p~AplwY~~~a~~h~ 317 (323)
+.-+......+..+|.+.-+..+..+| -|+|||||.-.|..-.=.+++|.++.
T Consensus 146 r~~~l~~~~~f~~~Y~~~i~~v~~~~~-~WvYP~L~~~~~~~riif~~~a~~~~ 198 (224)
T KOG3989|consen 146 RSAGLTGIASFVTLYFIWIHYVYFYNG-FWVYPFLGVLAPYKRIIFFVVATLFV 198 (224)
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccCC-EEeeccchhccchhHHHHHHHHHHHH
Confidence 777777778888888776555555534 79999999988888777777776654
No 3
>KOG4740 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.22 E-value=2.2e+02 Score=30.35 Aligned_cols=104 Identities=14% Similarity=0.236 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCccCCCCCcCCCCccccccccccCCcccccCCCChhHHHHHHHHHHHHHHHHHHHHhh
Q 020665 32 LCAIWVLITMIFAFFIIWKYEGFRNSNRVTAETQQPEKAGFLYEDETWKPCLRGVHPAWLLAFRVLAFAVLLILLVATAL 111 (323)
Q Consensus 32 ~C~~~v~~~~~~a~~li~k~E~~~~~~~~~~~~~~~~~~~~l~~~~~W~~c~~~ihP~wlL~yR~i~f~~~~~~li~~~~ 111 (323)
=|.+.--+--++.++.+||++++..++...++ ++...+.-|. +-+-+.+++.=.++..+.. +.+..+.
T Consensus 300 tciVEySLI~Aai~fiiWk~i~~~~~~~~~~k--kK~~~R~DCs---------~t~~GlF~Gi~~li~s~Is-i~~~~il 367 (564)
T KOG4740|consen 300 TCIVEYSLIAAAILFIIWKNIGRNPGESSKDK--KKHHIRFDCS---------GTSVGLFLGIALLIGSFIS-IALFNIL 367 (564)
T ss_pred HHHHHHHHHHHHHHhheeeeccCCcccccchh--hcCccceecC---------CcchHHHHHHHHHHHHHHH-HHHHHHH
Confidence 34444444444455889999988653221111 1112222221 2222344444333333332 2233333
Q ss_pred ccCCeEEEEechhhHHHH-HHHHHHHHHHHHHhhhhhhc
Q 020665 112 FDGGSIFYYYTQWTCTFT-AIYFGLGSSLSMYGCYQYHK 149 (323)
Q Consensus 112 ~~g~~~F~YyT~Wtf~Lv-tiYF~lgs~~S~~gc~~~~~ 149 (323)
.+.+.. =++++.+.-. +++|..+.+..+.|.++-++
T Consensus 368 ~~~~~~--~~A~~v~~~~~l~~f~~a~la~l~~f~~mr~ 404 (564)
T KOG4740|consen 368 CSEDNP--RAADYVVGITDLLLFVVALLACLFAFIRMRK 404 (564)
T ss_pred HcCCCc--hhhHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333 3678888777 78888888888877777553
No 4
>PF12841 YvrJ: YvrJ protein family; InterPro: IPR024419 This entry is represents a family of uncharacterised protein. The function of the Bacillus subtilis YvrJ protein is not known, but its expression is regulated by the cell envelope stress-inducible sigma factor YvrI [].
Probab=31.46 E-value=20 Score=24.51 Aligned_cols=18 Identities=17% Similarity=0.272 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhhhccC
Q 020665 37 VLITMIFAFFIIWKYEGF 54 (323)
Q Consensus 37 v~~~~~~a~~li~k~E~~ 54 (323)
++.|+++|++|+-|-|+.
T Consensus 6 ~GFPi~va~yLL~R~E~k 23 (38)
T PF12841_consen 6 VGFPIAVAIYLLVRIEKK 23 (38)
T ss_pred cCcHHHHHHHHHHHHHHH
Confidence 578999999999999863
No 5
>PF12942 Archaeal_AmoA: Archaeal ammonia monooxygenase subunit A (AmoA); InterPro: IPR024656 This entry represents a group of archaeal proteins that contains ammonia monooxygenase subunit A. Ammonia monooxygenase is an enzyme that oxidises ammonia to nitrite and nitrate, thus playing a significant role in the nitrogen cycle. Ammonia-oxidising archaea (AOA) are widespread in marine environments [].
Probab=28.44 E-value=1.6 Score=39.22 Aligned_cols=30 Identities=23% Similarity=0.492 Sum_probs=22.2
Q ss_pred EEEechhhHHHHHHHHHHHHHHHHHhhhhh
Q 020665 118 FYYYTQWTCTFTAIYFGLGSSLSMYGCYQY 147 (323)
Q Consensus 118 F~YyT~Wtf~LvtiYF~lgs~~S~~gc~~~ 147 (323)
++|||+|-++...++...-+..-.-||-.|
T Consensus 15 yifytdwawtsfvvFsisqs~ML~vga~yy 44 (183)
T PF12942_consen 15 YIFYTDWAWTSFVVFSISQSLMLVVGAMYY 44 (183)
T ss_pred eeEEeccCCceEEEEEechhHHHHhhheEE
Confidence 566999999988887766666666666554
No 6
>COG1755 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.51 E-value=1.7e+02 Score=26.54 Aligned_cols=51 Identities=20% Similarity=0.271 Sum_probs=46.0
Q ss_pred hhhhhhHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHhhhhcccc
Q 020665 241 VINMHTINAVLLLGDAALNCLRFPMFRIAYFFLWTVTYVIVQWAVHACVKI 291 (323)
Q Consensus 241 ni~~HslNaVflLiD~~Ln~lPfp~fh~~Y~vlwt~~YviF~wI~Ha~g~~ 291 (323)
...+|.+=-+.+++|.++|...|.|..+.=+.+....+.+--|++|..|..
T Consensus 45 l~ilH~~~yls~ivE~~~~~~~f~~~~~~gl~~~l~s~~ll~~vi~~LG~i 95 (172)
T COG1755 45 LVILHTAFYLSCIVEAWLNNTFFNWLSIIGLALLLFSQILLYWVIKSLGEI 95 (172)
T ss_pred HHHHHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 447899999999999999999999999988888899999999999999874
No 7
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=20.61 E-value=3.2e+02 Score=27.41 Aligned_cols=38 Identities=29% Similarity=0.394 Sum_probs=25.9
Q ss_pred ccCCeEEEEechhhH------HHHHHHHHHHHHHHHHhhhhhhc
Q 020665 112 FDGGSIFYYYTQWTC------TFTAIYFGLGSSLSMYGCYQYHK 149 (323)
Q Consensus 112 ~~g~~~F~YyT~Wtf------~LvtiYF~lgs~~S~~gc~~~~~ 149 (323)
.+++..|+|+|+.-. .-....-..|++.++.|++.|++
T Consensus 234 ~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~ 277 (433)
T PF03092_consen 234 ISSASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRK 277 (433)
T ss_pred CCCccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455668888886533 33344447888888888888874
No 8
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=18.18 E-value=1.1e+02 Score=25.11 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=16.4
Q ss_pred EEEechhhHHHHHHHHHHHHHHHHHhh
Q 020665 118 FYYYTQWTCTFTAIYFGLGSSLSMYGC 144 (323)
Q Consensus 118 F~YyT~Wtf~LvtiYF~lgs~~S~~gc 144 (323)
.+||..|-|+++.+-..+-++.-++++
T Consensus 16 ~~~~~~w~FWlv~~liill~c~c~~~~ 42 (102)
T PF11669_consen 16 SYYYELWYFWLVWVLIILLSCCCACRH 42 (102)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999987444444444444333
No 9
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=17.73 E-value=1.9e+02 Score=27.18 Aligned_cols=12 Identities=17% Similarity=0.695 Sum_probs=6.6
Q ss_pred hHHHHHHHHHHH
Q 020665 30 VILCAIWVLITM 41 (323)
Q Consensus 30 ~~~C~~~v~~~~ 41 (323)
.++|.|++++-+
T Consensus 130 mLIClIIIAVLf 141 (227)
T PF05399_consen 130 MLICLIIIAVLF 141 (227)
T ss_pred HHHHHHHHHHHH
Confidence 456666655443
No 10
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=16.19 E-value=6.3e+02 Score=20.89 Aligned_cols=53 Identities=9% Similarity=0.234 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHhhhccCccCCCCCcCCCCccccccccccCCcccccCCCCh
Q 020665 33 CAIWVLITMIFAFFIIWKYEGFRNSNRVTAETQQPEKAGFLYEDETWKPCLRGVHP 88 (323)
Q Consensus 33 C~~~v~~~~~~a~~li~k~E~~~~~~~~~~~~~~~~~~~~l~~~~~W~~c~~~ihP 88 (323)
+.+.++++++---|+..+.+..+....+. +++...+.+.....|+.|...-.+
T Consensus 3 a~~L~~ia~~T~~W~~~~~~~~~~~~~~~---~~~~~~~~~~~~Glw~~c~~~~~~ 55 (172)
T PF13903_consen 3 ALILLIIAFGTPYWVVSDPRRTGFNCTES---NNSVNFGLFSHSGLWRICFQREYD 55 (172)
T ss_pred HHHHHHHHHcCchHhEEeeeccCcccccc---ccccccccccccCcceEeecCCcC
Confidence 34444455555557775543322100111 122233344445689999876543
Done!