Query 020665
Match_columns 323
No_of_seqs 115 out of 131
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 06:23:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020665.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020665hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mk7_C Cytochrome C oxidase, C 45.7 84 0.0029 28.8 8.9 63 35-106 11-73 (311)
2 2knc_A Integrin alpha-IIB; tra 31.8 79 0.0027 22.3 4.8 32 28-59 13-44 (54)
3 2l8s_A Integrin alpha-1; trans 27.9 86 0.0029 22.2 4.4 33 28-60 10-42 (54)
4 4f4l_A ION transport protein; 11.2 1.3E+02 0.0046 23.4 2.5 48 7-55 51-98 (112)
5 2l2t_A Receptor tyrosine-prote 10.1 3.5E+02 0.012 18.1 3.9 14 38-51 23-36 (44)
6 2k1a_A Integrin alpha-IIB; sin 9.7 4.2E+02 0.014 17.5 4.4 29 28-56 11-39 (42)
7 2ks1_B Epidermal growth factor 9.0 4.1E+02 0.014 17.7 3.8 16 36-51 22-37 (44)
8 3rko_J NADH-quinone oxidoreduc 8.3 2.8E+02 0.0095 24.0 3.6 27 23-51 136-162 (184)
9 2ker_A Parvulustat, alpha-amyl 5.8 1E+02 0.0035 23.2 -0.4 34 49-89 16-49 (78)
10 4b4a_A TATC, SEC-independent p 5.4 2.7E+02 0.0093 25.0 2.0 16 27-42 187-202 (249)
No 1
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=45.69 E-value=84 Score=28.78 Aligned_cols=63 Identities=14% Similarity=0.274 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHhhhccCccCCCCCcCCCCccccccccccCCcccccCCCChhHHHHHHHHHHHHHHHHH
Q 020665 35 IWVLITMIFAFFIIWKYEGFRNSNRVTAETQQPEKAGFLYEDETWKPCLRGVHPAWLLAFRVLAFAVLLILL 106 (323)
Q Consensus 35 ~~v~~~~~~a~~li~k~E~~~~~~~~~~~~~~~~~~~~l~~~~~W~~c~~~ihP~wlL~yR~i~f~~~~~~l 106 (323)
++++.++++-++||+..-..+ .+. ...++-|+-+|. -.-+.+.-|.|++..=.+..++.++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~h~~dg---i~e~~nplp~ww~~~f~~~iv~~~~y~ 73 (311)
T 3mk7_C 11 LLTLGTIVALFWLIFATRKGE-SAG-----TTDQTMGHAFDG---IEEYDNPLPRWWFLLFIGTLVFGILYL 73 (311)
T ss_dssp HHHHHHHHHHHHHHHHTTTTC-CSS-----CCCCCCSCCBTT---BCBCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccc-CCC-----CCCCCCCCCccC---hhhccCCCChHHHHHHHHHHHHHHHHH
Confidence 445666777777787763221 111 123455666653 223456678888665444444443333
No 2
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=31.84 E-value=79 Score=22.29 Aligned_cols=32 Identities=19% Similarity=0.481 Sum_probs=18.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhccCccCCC
Q 020665 28 WRVILCAIWVLITMIFAFFIIWKYEGFRNSNR 59 (323)
Q Consensus 28 W~~~~C~~~v~~~~~~a~~li~k~E~~~~~~~ 59 (323)
|...+.++--++..++-.+++||--++++++.
T Consensus 13 wiIi~svl~GLllL~li~~~LwK~GFFkR~~~ 44 (54)
T 2knc_A 13 WWVLVGVLGGLLLLTILVLAMWKVGFFKRNRP 44 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccCCCC
Confidence 44444444444444555677899877765444
No 3
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=27.91 E-value=86 Score=22.16 Aligned_cols=33 Identities=21% Similarity=0.550 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhccCccCCCC
Q 020665 28 WRVILCAIWVLITMIFAFFIIWKYEGFRNSNRV 60 (323)
Q Consensus 28 W~~~~C~~~v~~~~~~a~~li~k~E~~~~~~~~ 60 (323)
|...+.++--++..++-.+++||--++++++++
T Consensus 10 WiIi~svl~GLLLL~Lii~~LwK~GFFKR~~~~ 42 (54)
T 2l8s_A 10 WVILLSAFAGLLLLMLLILALWKIGFFKRPLKK 42 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccCCCcc
Confidence 444554444444445556778998877655543
No 4
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=11.24 E-value=1.3e+02 Score=23.37 Aligned_cols=48 Identities=13% Similarity=0.162 Sum_probs=24.4
Q ss_pred CCCccccceecCCCCcccccchhhHHHHHHHHHHHHHHHHHHhhhccCc
Q 020665 7 SKVSWHPALTVDTTTSEYWLNWRVILCAIWVLITMIFAFFIIWKYEGFR 55 (323)
Q Consensus 7 ~~~~~~~~~~~~~~~~~ywl~W~~~~C~~~v~~~~~~a~~li~k~E~~~ 55 (323)
+.+.|.+.|..+.. ..++..|-+++..+.+..-+++-+++=.=-|...
T Consensus 51 T~e~W~~~~~~~~~-~~~~~a~iyFi~fi~i~~fi~lNLfiaVi~~~f~ 98 (112)
T 4f4l_A 51 TLESWSMGIVRPVM-NVHPNAWVFFIPFIMLTTFTVLNLFIGIIVDAMA 98 (112)
T ss_dssp TTTTCCCCCHHHHT-TTSTTTHHHHHHHHHHHHHHHHHHHTTTC-----
T ss_pred HccccHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667665543222 2334456677777777666666665444334333
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=10.10 E-value=3.5e+02 Score=18.10 Aligned_cols=14 Identities=14% Similarity=0.278 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHhhh
Q 020665 38 LITMIFAFFIIWKY 51 (323)
Q Consensus 38 ~~~~~~a~~li~k~ 51 (323)
++.++++.++.+|+
T Consensus 23 v~ii~~~~~~~~RR 36 (44)
T 2l2t_A 23 LVIVGLTFAVYVRR 36 (44)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhh
Confidence 33444555666665
No 6
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=9.74 E-value=4.2e+02 Score=17.50 Aligned_cols=29 Identities=21% Similarity=0.527 Sum_probs=16.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhccCcc
Q 020665 28 WRVILCAIWVLITMIFAFFIIWKYEGFRN 56 (323)
Q Consensus 28 W~~~~C~~~v~~~~~~a~~li~k~E~~~~ 56 (323)
|...+.++--++-.++-.+++||--++++
T Consensus 11 wiIi~s~l~GLllL~li~~~LwK~GFFkR 39 (42)
T 2k1a_A 11 WWVLVGVLGGLLLLTILVLAMWKVGFFKR 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccC
Confidence 44444444444444455577898876653
No 7
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=8.96 E-value=4.1e+02 Score=17.72 Aligned_cols=16 Identities=6% Similarity=0.225 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHhhh
Q 020665 36 WVLITMIFAFFIIWKY 51 (323)
Q Consensus 36 ~v~~~~~~a~~li~k~ 51 (323)
.+++.++++.++.+|+
T Consensus 22 ~~~~ii~~~~~~~~RR 37 (44)
T 2ks1_B 22 LLLLVVALGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhh
Confidence 3334445555666665
No 8
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=8.32 E-value=2.8e+02 Score=23.98 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=20.4
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhh
Q 020665 23 EYWLNWRVILCAIWVLITMIFAFFIIWKY 51 (323)
Q Consensus 23 ~ywl~W~~~~C~~~v~~~~~~a~~li~k~ 51 (323)
+|++ .|=+..+..+++|++|..+-+|.
T Consensus 136 ~Y~l--pFElaSvlLLvAmIGAIvLarr~ 162 (184)
T 3rko_J 136 PYVL--AVELASMLLLAGLVVAFHVGREE 162 (184)
T ss_dssp TSHH--HHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHhcc
Confidence 4665 57788888899999888775543
No 9
>2ker_A Parvulustat, alpha-amylase inhibitor Z-2685; parvulustat (Z-2685), hydrolase inhibitor; NMR {Streptomyces parvulus}
Probab=5.85 E-value=1e+02 Score=23.22 Aligned_cols=34 Identities=24% Similarity=0.679 Sum_probs=21.2
Q ss_pred hhhccCccCCCCCcCCCCccccccccccCCcccccCCCChh
Q 020665 49 WKYEGFRNSNRVTAETQQPEKAGFLYEDETWKPCLRGVHPA 89 (323)
Q Consensus 49 ~k~E~~~~~~~~~~~~~~~~~~~~l~~~~~W~~c~~~ihP~ 89 (323)
|||-.....|. +.....+.|++.+|-||. .++|+
T Consensus 16 WRYT~v~N~Cs------~tvsVtV~Y~dG~~~PCr-v~~PG 49 (78)
T 2ker_A 16 WRYTDVHNGCA------DAVSVTVEYTHGQWAPCR-VIEPG 49 (78)
T ss_dssp SSEEEEECCSS------SCEEEEEEESSCCSCCCE-EECTT
T ss_pred eEEEeeeCCCc------ccEEEEEEEeCCCcceeE-EeCCC
Confidence 55544443333 334566789999999997 34553
No 10
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=5.38 E-value=2.7e+02 Score=24.96 Aligned_cols=16 Identities=13% Similarity=0.241 Sum_probs=8.6
Q ss_pred chhhHHHHHHHHHHHH
Q 020665 27 NWRVILCAIWVLITMI 42 (323)
Q Consensus 27 ~W~~~~C~~~v~~~~~ 42 (323)
+||..+-++.|.++++
T Consensus 187 ~Rr~~iv~~~v~aAii 202 (249)
T 4b4a_A 187 FRKYFIVIAFVIGAII 202 (249)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHH
Confidence 3566555555555443
Done!