Query 020665
Match_columns 323
No_of_seqs 115 out of 131
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 06:24:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020665.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020665hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1r3jc_ f.14.1.1 (C:) Potassiu 17.4 69 0.005 22.6 4.3 28 26-53 3-31 (103)
2 d2h8pc1 f.14.1.1 (C:22-78) Pot 13.3 1.2E+02 0.0089 19.6 4.3 29 26-54 3-32 (57)
3 d1ok0a_ b.5.1.1 (A:) alpha-Amy 10.9 16 0.0012 25.4 -1.0 35 49-90 18-52 (74)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 7.4 1.3E+02 0.0092 24.6 3.2 14 30-43 186-199 (447)
5 d1w66a1 d.104.1.3 (A:1-216) Li 5.6 74 0.0054 26.1 0.6 29 283-312 80-108 (216)
6 d1pw4a_ f.38.1.1 (A:) Glycerol 5.4 1.4E+02 0.0099 24.5 2.2 26 28-53 411-436 (447)
7 d1jb0x_ f.23.20.1 (X:) Subunit 5.2 2E+02 0.015 15.9 2.1 17 121-137 6-22 (29)
8 d1pv7a_ f.38.1.2 (A:) Lactose 4.3 86 0.0063 24.8 0.0 24 27-50 379-402 (417)
9 d1oeda_ f.36.1.1 (A:) Acetylch 3.8 3.1E+02 0.023 21.1 3.3 27 26-52 64-90 (227)
10 d1oedb_ f.36.1.1 (B:) Acetylch 3.1 4.4E+02 0.032 20.3 3.6 28 26-53 64-91 (250)
No 1
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=17.36 E-value=69 Score=22.60 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=19.4
Q ss_pred cchhhHHHHHHHHHH-HHHHHHHHhhhcc
Q 020665 26 LNWRVILCAIWVLIT-MIFAFFIIWKYEG 53 (323)
Q Consensus 26 l~W~~~~C~~~v~~~-~~~a~~li~k~E~ 53 (323)
|+||.+..++++++. ++..+.+++--|+
T Consensus 3 l~~r~~~~~~~~~~~~~~~~s~~~~~~e~ 31 (103)
T d1r3jc_ 3 LHWRAAGAATVLLVIVLLAGSYLAVLAER 31 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 689999887776665 4455566676664
No 2
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=13.27 E-value=1.2e+02 Score=19.62 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=19.8
Q ss_pred cchhhHHHHHHHHH-HHHHHHHHHhhhccC
Q 020665 26 LNWRVILCAIWVLI-TMIFAFFIIWKYEGF 54 (323)
Q Consensus 26 l~W~~~~C~~~v~~-~~~~a~~li~k~E~~ 54 (323)
++||-+.+++.+.+ .+++++.++.--|+.
T Consensus 3 ~~~R~~~~~~~~~~i~i~~~s~~~y~~E~~ 32 (57)
T d2h8pc1 3 LHWRAAGAATVLLVIVLLAGSYLAVLAERG 32 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 58998887766554 445567777777753
No 3
>d1ok0a_ b.5.1.1 (A:) alpha-Amylase inhibitor tendamistat {Streptomyces tendae [TaxId: 1932]}
Probab=10.91 E-value=16 Score=25.45 Aligned_cols=35 Identities=29% Similarity=0.549 Sum_probs=22.5
Q ss_pred hhhccCccCCCCCcCCCCccccccccccCCcccccCCCChhH
Q 020665 49 WKYEGFRNSNRVTAETQQPEKAGFLYEDETWKPCLRGVHPAW 90 (323)
Q Consensus 49 ~k~E~~~~~~~~~~~~~~~~~~~~l~~~~~W~~c~~~ihP~w 90 (323)
|||-.....|. +.....+.|++.+|-||. .+.|+|
T Consensus 18 WRYT~v~N~C~------~~vsVtV~Y~dG~~~PCr-~~~PG~ 52 (74)
T d1ok0a_ 18 WRYSQADNGCA------ETVTVKVVYEDDTEGLCY-AVAPGQ 52 (74)
T ss_dssp SSEEEEEECSS------SCEEEEEEETTSCBCCCE-EECTTC
T ss_pred eEEEeecCCCc------ccEEEEEEEeCCCcceee-eeCCCc
Confidence 55544443333 234566789999999998 456655
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=7.41 E-value=1.3e+02 Score=24.64 Aligned_cols=14 Identities=14% Similarity=0.429 Sum_probs=5.8
Q ss_pred hHHHHHHHHHHHHH
Q 020665 30 VILCAIWVLITMIF 43 (323)
Q Consensus 30 ~~~C~~~v~~~~~~ 43 (323)
+.+.++..++..++
T Consensus 186 ~~~~~~~~~~~~~~ 199 (447)
T d1pw4a_ 186 LYMPAFCAILVALF 199 (447)
T ss_dssp THHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHH
Confidence 44444444433333
No 5
>d1w66a1 d.104.1.3 (A:1-216) Lipoyltransferase LipB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=5.59 E-value=74 Score=26.05 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=22.5
Q ss_pred HhhhhccccceeeeccCCCCCCccHHHHHH
Q 020665 283 WAVHACVKIWWAYPFLDLSSPYAPLWCVQC 312 (323)
Q Consensus 283 wI~Ha~g~~~wpYpFLD~~~p~AplwY~~~ 312 (323)
..||.=|+ --.||.+|+..+..+.+|+..
T Consensus 80 vTyHGPGQ-lV~Ypil~l~~~~~~~~~v~~ 108 (216)
T d1w66a1 80 ITWHGPGQ-LVGYPIIGLAEPLDVVNYVRR 108 (216)
T ss_dssp EEEECTTE-EEEEEECBBCSSCCHHHHHHH
T ss_pred EEEecCCc-eeeEEEeccccccchhhhHHH
Confidence 34566555 689999999999888888753
No 6
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=5.41 E-value=1.4e+02 Score=24.45 Aligned_cols=26 Identities=4% Similarity=0.029 Sum_probs=14.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhcc
Q 020665 28 WRVILCAIWVLITMIFAFFIIWKYEG 53 (323)
Q Consensus 28 W~~~~C~~~v~~~~~~a~~li~k~E~ 53 (323)
.-+.++++..+++.++...+..|+|+
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (447)
T d1pw4a_ 411 GGFMVMIGGSILAVILLIVVMIGEKR 436 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34566666666666665555555443
No 7
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=5.19 E-value=2e+02 Score=15.92 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=12.8
Q ss_pred echhhHHHHHHHHHHHH
Q 020665 121 YTQWTCTFTAIYFGLGS 137 (323)
Q Consensus 121 yT~Wtf~LvtiYF~lgs 137 (323)
-|-|...|+.|-|+.++
T Consensus 6 rt~wa~lllainflvaa 22 (29)
T d1jb0x_ 6 RTFWAVLLLAINFLVAA 22 (29)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46788888888886654
No 8
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=4.27 E-value=86 Score=24.83 Aligned_cols=24 Identities=8% Similarity=0.077 Sum_probs=15.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhh
Q 020665 27 NWRVILCAIWVLITMIFAFFIIWK 50 (323)
Q Consensus 27 ~W~~~~C~~~v~~~~~~a~~li~k 50 (323)
++-++++++..++..+++.+++.|
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 379 QGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcC
Confidence 344667777777777776666643
No 9
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=3.76 E-value=3.1e+02 Score=21.08 Aligned_cols=27 Identities=15% Similarity=0.331 Sum_probs=23.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhc
Q 020665 26 LNWRVILCAIWVLITMIFAFFIIWKYE 52 (323)
Q Consensus 26 l~W~~~~C~~~v~~~~~~a~~li~k~E 52 (323)
+-..+..|.+.+.++++.+++++.-+.
T Consensus 64 i~~y~~~~~~~v~~sli~tiiV~~l~~ 90 (227)
T d1oeda_ 64 IGKYMLFTMIFVISSIIITVVVINTHH 90 (227)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHhheec
Confidence 566799999999999999999986653
No 10
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=3.08 E-value=4.4e+02 Score=20.28 Aligned_cols=28 Identities=11% Similarity=0.185 Sum_probs=24.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhcc
Q 020665 26 LNWRVILCAIWVLITMIFAFFIIWKYEG 53 (323)
Q Consensus 26 l~W~~~~C~~~v~~~~~~a~~li~k~E~ 53 (323)
+-..+.+|.+.+.++++.+++++--+.+
T Consensus 64 i~~~~~~~~~~~~~~~~~~~~v~~~~~~ 91 (250)
T d1oedb_ 64 IIRYLMFIMILVAFSVILSVVVLNLHHR 91 (250)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhheeeecc
Confidence 6678999999999999999999877654
Done!