BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020666
(323 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 119/284 (41%), Gaps = 34/284 (11%)
Query: 55 IAGGTAGVFVEAALYPIDTIKTRLQ--------------AAHGG--GKI-------NLKG 91
+ GTA + +P+DT K RLQ A + G G I +
Sbjct: 6 LGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRS 65
Query: 92 LYSGLVGNLAGAFPASAIFLGIYEPVKQKLLETFPENLSAFAHLTXXXXXXXXSSLVRVP 151
LY+GLV L +++ +G+Y+ VKQ E+ + L + V P
Sbjct: 66 LYNGLVAGLQRQMSFASVRIGLYDSVKQ-FYTKGSEHAGIGSRLLAGSTTGALAVAVAQP 124
Query: 152 TEVIKQRIQTG-------QFTSAPDAVRLIVRREGLKGLFAGYGSFLLRDLPFDAIQFCI 204
T+V+K R Q ++ S +A + I R EG++GL+ G + R+ + +
Sbjct: 125 TDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVT 184
Query: 205 YEQLLLGYKLAARRSLSNAENAIVGAF-AGAITGAVTAPLDVIKTRLMVQGSANQYKGIC 263
Y+ L+ L A + AF AG T + +P+DV+KTR M + QY
Sbjct: 185 YD-LIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYM-NSALGQYHSAG 242
Query: 264 DCVSTIAREEGISTLFKGMGPRVLWIGIGGSIFFGVLEKTKEVL 307
C T+ R+EG +KG P L +G + F E+ K L
Sbjct: 243 HCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRAL 286
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 128/310 (41%), Gaps = 55/310 (17%)
Query: 40 EDKPFNFLHVLFDCAIAGGTAGVFVEAALYPIDTIKTRLQAAHGGGKINLKGLYSGLV-- 97
D+ +FL +AGG A + A+ PI+ +K LQ H +I+ + Y G++
Sbjct: 1 SDQALSFLKDF----LAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDC 56
Query: 98 ---------------GNLAGA---FPASAIFLGIYEPVKQKLL---ETFPENLSAFAHLT 136
GNLA FP A+ + KQ L + + FA
Sbjct: 57 VVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNL 116
Query: 137 XXXXXXXXSSLVRV-PTEVIKQRIQTG--------QFTSAPDAVRLIVRREGLKGLFAGY 187
+SL V P + + R+ +FT + + I + +GL+GL+ G+
Sbjct: 117 ASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGF 176
Query: 188 GSFLLRDLPFDAIQFCIYEQLLLGYKLAARRSLSNAENA------IVGAFAGAITGAVTA 241
+ + + A F +Y+ A+ L + +N ++ A+ G V+
Sbjct: 177 NVSVQGIIIYRAAYFGVYD--------TAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSY 228
Query: 242 PLDVIKTRLMVQ----GSANQYKGICDCVSTIAREEGISTLFKGMGPRVLWIGIGGSIFF 297
P D ++ R+M+Q G+ Y G DC IA++EG FKG VL G+GG+
Sbjct: 229 PFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVL-RGMGGAFVL 287
Query: 298 GVLEKTKEVL 307
+ ++ K+ +
Sbjct: 288 VLYDEIKKFV 297
>pdb|2R2F|A Chain A, Ribonucleotide Reductase R2f Protein From Salmonella
Typhimurium (Oxidized)
pdb|2R2F|B Chain B, Ribonucleotide Reductase R2f Protein From Salmonella
Typhimurium (Oxidized)
pdb|1R2F|A Chain A, Ribonucleotide Reductase R2f Protein From Salmonella
Typhimurium
pdb|1R2F|B Chain B, Ribonucleotide Reductase R2f Protein From Salmonella
Typhimurium
pdb|2BQ1|I Chain I, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
Salmonella Typhimurium
pdb|2BQ1|J Chain J, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
Salmonella Typhimurium
Length = 319
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 162 GQFTSAPDAVRLIVRREGLKGLFAGY 187
G+ T+ D +RLI+R E + G + GY
Sbjct: 176 GKLTNTADLIRLIIRDEAVHGYYIGY 201
>pdb|3N37|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli
pdb|3N38|A Chain A, Ribonucleotide Reductase Nrdf From Escherichia Coli Soaked
With Ferrous Ions
pdb|3N39|B Chain B, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Nrdi
pdb|3N39|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Nrdi
pdb|3N3A|B Chain B, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Reduced Nrdi
pdb|3N3A|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Reduced Nrdi
pdb|3N3B|B Chain B, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Reduced Nrdi With A
Trapped Peroxide
pdb|3N3B|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Reduced Nrdi With A
Trapped Peroxide
Length = 319
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 162 GQFTSAPDAVRLIVRREGLKGLFAGY 187
G+ T+ D +RLI+R E + G + GY
Sbjct: 176 GKLTNTADLIRLIIRDEAVHGYYIGY 201
>pdb|3H7A|A Chain A, Crystal Structure Of Short-Chain Dehydrogenase From
Rhodopseudomonas Palustris
pdb|3H7A|B Chain B, Crystal Structure Of Short-Chain Dehydrogenase From
Rhodopseudomonas Palustris
pdb|3H7A|C Chain C, Crystal Structure Of Short-Chain Dehydrogenase From
Rhodopseudomonas Palustris
pdb|3H7A|D Chain D, Crystal Structure Of Short-Chain Dehydrogenase From
Rhodopseudomonas Palustris
Length = 252
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 77 RLQAAHGGGKINLKGLYSGLVGNLAGAFPASAIFLGIYEPVKQKLLETFPENLSAFAHL 135
RL AHG GKI G + L G A ASA F G+ + E P+N+ AHL
Sbjct: 127 RLMLAHGQGKIFFTGATASLRGGSGFAAFASAKF-GLRAVAQSMARELMPKNIHV-AHL 183
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,513,865
Number of Sequences: 62578
Number of extensions: 329235
Number of successful extensions: 723
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 702
Number of HSP's gapped (non-prelim): 10
length of query: 323
length of database: 14,973,337
effective HSP length: 99
effective length of query: 224
effective length of database: 8,778,115
effective search space: 1966297760
effective search space used: 1966297760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)