Query 020666
Match_columns 323
No_of_seqs 214 out of 2009
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 06:24:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020666.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020666hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 1.5E-54 5E-59 390.5 16.6 257 53-311 4-290 (303)
2 1okc_A ADP, ATP carrier protei 100.0 9.2E-53 3.2E-57 377.8 25.6 256 49-307 6-297 (297)
3 1okc_A ADP, ATP carrier protei 100.0 1.2E-35 3.9E-40 266.5 18.9 182 129-310 5-204 (297)
4 2lck_A Mitochondrial uncouplin 100.0 1.8E-35 6.3E-40 265.9 14.2 177 134-311 4-196 (303)
5 1ejp_A Syndecan-4; symmetric-p 29.7 30 0.001 18.1 1.6 12 312-323 2-13 (28)
6 3tgu_G UQCRQ, mitochondrial ub 20.0 75 0.0026 21.5 2.7 35 179-213 33-67 (81)
7 2acm_A Mucin-1; auto-catalytic 19.0 19 0.00063 22.8 -0.5 20 260-279 40-59 (66)
8 3tgu_G UQCRQ, mitochondrial ub 18.8 87 0.003 21.2 2.8 38 276-313 35-72 (81)
9 1pp9_G Ubiquinol-cytochrome C 16.8 1.5E+02 0.0051 20.0 3.6 36 178-213 32-67 (81)
10 3cx5_H Cytochrome B-C1 complex 9.5 2.3E+02 0.0078 19.7 2.8 40 273-312 42-81 (93)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.5e-54 Score=390.52 Aligned_cols=257 Identities=28% Similarity=0.406 Sum_probs=232.3
Q ss_pred HHHHHHHHHHHHHhhhCcHHHHHHHHHhccCC-----------------------CccccccccccchHhhhhhhhhHHH
Q 020666 53 CAIAGGTAGVFVEAALYPIDTIKTRLQAAHGG-----------------------GKINLKGLYSGLVGNLAGAFPASAI 109 (323)
Q Consensus 53 ~~~ag~~a~~~~~~~~~Pld~vK~r~Q~~~~~-----------------------~~~g~~gly~G~~~~l~~~~~~~~~ 109 (323)
.+++|++||+++.++++|||+||+|+|++... +++|++|||||+.+++++.++..++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 56999999999999999999999999997542 1468999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhCCCChhHHHHHHHHhHHhHhhhhccccHHHHHHHHHhC-------CCCCHHHHHHHHHHhhchhh
Q 020666 110 FLGIYEPVKQKLLETFPENLSAFAHLTAGAVGGAASSLVRVPTEVIKQRIQTG-------QFTSAPDAVRLIVRREGLKG 182 (323)
Q Consensus 110 ~f~~y~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~i~~Pld~ik~r~q~~-------~~~~~~~~~~~i~~~~G~~g 182 (323)
+|.+||.+|+.+.+... ..+....+++|++||+++.++++|+|++|+|+|.+ +|.+.++++++++++||++|
T Consensus 84 ~f~~ye~~k~~~~~~~~-~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~g 162 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGSE-HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRG 162 (303)
T ss_dssp TTTHHHHHHHHHSCCCS-SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHhcCCc-CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhh
Confidence 99999999998865422 35677899999999999999999999999999986 47899999999999999999
Q ss_pred cccchHHHHhhhhhhhHHHHHHHHHHHHHhHHHhhcccChhHHHHHHHHHhHhHhhhcccHHHHHHHHHhcCCCCCCCCH
Q 020666 183 LFAGYGSFLLRDLPFDAIQFCIYEQLLLGYKLAARRSLSNAENAIVGAFAGAITGAVTAPLDVIKTRLMVQGSANQYKGI 262 (323)
Q Consensus 183 lyrG~~~~~~r~~~~~~~~~~~ye~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~d~vk~r~q~~~~~~~~~~~ 262 (323)
||||+.+++++.+++.+++|.+||.+|+.+........+....+++|++||++++++++|+|+||+|||.+.. ..|.++
T Consensus 163 lyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~-~~y~~~ 241 (303)
T 2lck_A 163 LWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL-GQYHSA 241 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS-SSCCSH
T ss_pred hhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc-cccCCH
Confidence 9999999999999999999999999998775433334566788999999999999999999999999999853 469999
Q ss_pred HHHHHHHHHhhCccccccchhHHHHHHhhhhhHHHHHHHHHHHHHhccc
Q 020666 263 CDCVSTIAREEGISTLFKGMGPRVLWIGIGGSIFFGVLEKTKEVLAQRH 311 (323)
Q Consensus 263 ~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~i~~~~ye~~~~~l~~~~ 311 (323)
++|+++|+++||++|||||+.++++|.+|.++++|.+||.+|+.+.+.+
T Consensus 242 ~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~~ 290 (303)
T 2lck_A 242 GHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAY 290 (303)
T ss_dssp HHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999998776543
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=9.2e-53 Score=377.80 Aligned_cols=256 Identities=24% Similarity=0.423 Sum_probs=223.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHhccCC--------------------CccccccccccchHhhhhhhhhHH
Q 020666 49 VLFDCAIAGGTAGVFVEAALYPIDTIKTRLQAAHGG--------------------GKINLKGLYSGLVGNLAGAFPASA 108 (323)
Q Consensus 49 ~~~~~~~ag~~a~~~~~~~~~Pld~vK~r~Q~~~~~--------------------~~~g~~gly~G~~~~l~~~~~~~~ 108 (323)
+.++.+++|++||+++.++++|||+||+|+|++... +++|++|||||+.+++++.++.++
T Consensus 6 ~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 85 (297)
T 1okc_A 6 SFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQA 85 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHH
Confidence 457789999999999999999999999999997531 146899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhCCC-C---hhHHHHHHHHhHHhHhhhhccccHHHHHHHHHhC--------CCCCHHHHHHHHHH
Q 020666 109 IFLGIYEPVKQKLLETFPE-N---LSAFAHLTAGAVGGAASSLVRVPTEVIKQRIQTG--------QFTSAPDAVRLIVR 176 (323)
Q Consensus 109 ~~f~~y~~~~~~~~~~~~~-~---~~~~~~~~~g~~ag~~~~~i~~Pld~ik~r~q~~--------~~~~~~~~~~~i~~ 176 (323)
++|++||.+|+.+...... . ......+++|++||+++.++++|+|+||+|+|.+ +|.+.+++++++++
T Consensus 86 ~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~ 165 (297)
T 1okc_A 86 LNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFK 165 (297)
T ss_dssp HHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHH
Confidence 9999999999965433221 1 2346789999999999999999999999999985 36899999999999
Q ss_pred hhchhhcccchHHHHhhhhhhhHHHHHHHHHHHHHhHHHhhcccChhHHHHHHHHHhHhHhhhcccHHHHHHHHHhcCC-
Q 020666 177 REGLKGLFAGYGSFLLRDLPFDAIQFCIYEQLLLGYKLAARRSLSNAENAIVGAFAGAITGAVTAPLDVIKTRLMVQGS- 255 (323)
Q Consensus 177 ~~G~~glyrG~~~~~~r~~~~~~~~~~~ye~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~d~vk~r~q~~~~- 255 (323)
+||++|||||+.+++++.+++.+++|.+||.+|+.+.. ....+....+++|+++|++++++++|+|+||+|||++..
T Consensus 166 ~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~--~~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~ 243 (297)
T 1okc_A 166 SDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPD--PKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGR 243 (297)
T ss_dssp HHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCG--GGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred hccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999999986642 234556778999999999999999999999999998743
Q ss_pred ---CCCCCCHHHHHHHHHHhhCccccccchhHHHHHHhhhhhHHHHHHHHHHHHH
Q 020666 256 ---ANQYKGICDCVSTIAREEGISTLFKGMGPRVLWIGIGGSIFFGVLEKTKEVL 307 (323)
Q Consensus 256 ---~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~i~~~~ye~~~~~l 307 (323)
...|+++++|+++|+++||++|||||+.++++|. +.+++.|.+||.+|+.+
T Consensus 244 ~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 244 KGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp CGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred CCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 2469999999999999999999999999999996 57889999999998753
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.2e-35 Score=266.50 Aligned_cols=182 Identities=26% Similarity=0.403 Sum_probs=161.8
Q ss_pred hhHHHHHHHHhHHhHhhhhccccHHHHHHHHHhC----------CCCCHHHHHHHHHHhhchhhcccchHHHHhhhhhhh
Q 020666 129 LSAFAHLTAGAVGGAASSLVRVPTEVIKQRIQTG----------QFTSAPDAVRLIVRREGLKGLFAGYGSFLLRDLPFD 198 (323)
Q Consensus 129 ~~~~~~~~~g~~ag~~~~~i~~Pld~ik~r~q~~----------~~~~~~~~~~~i~~~~G~~glyrG~~~~~~r~~~~~ 198 (323)
.+.+..+++|++||+++.++++|+|++|+|+|.+ +|++.++++++++++||++|||||+.+++++.+++.
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 4567889999999999999999999999999975 478999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHhhccc----ChhHHHHHHHHHhHhHhhhcccHHHHHHHHHhcCC----CCCCCCHHHHHHHHH
Q 020666 199 AIQFCIYEQLLLGYKLAARRSL----SNAENAIVGAFAGAITGAVTAPLDVIKTRLMVQGS----ANQYKGICDCVSTIA 270 (323)
Q Consensus 199 ~~~~~~ye~~~~~~~~~~~~~~----~~~~~~~~g~~ag~~~~~~~~P~d~vk~r~q~~~~----~~~~~~~~~~~~~i~ 270 (323)
+++|.+||.+|+.+........ .....+++|++||++++++++|+|+||+|+|.+.. ...|.++++|+++|+
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~ 164 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIF 164 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHH
Confidence 9999999999985432211111 23567899999999999999999999999999843 346899999999999
Q ss_pred HhhCccccccchhHHHHHHhhhhhHHHHHHHHHHHHHhcc
Q 020666 271 REEGISTLFKGMGPRVLWIGIGGSIFFGVLEKTKEVLAQR 310 (323)
Q Consensus 271 ~~~G~~glyrG~~~~~~~~~~~~~i~~~~ye~~~~~l~~~ 310 (323)
++||++|||||+.++++|.+|.+++.|.+||.+++.+.+.
T Consensus 165 ~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~ 204 (297)
T 1okc_A 165 KSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP 204 (297)
T ss_dssp HHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG
T ss_pred HhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999977543
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.8e-35 Score=265.88 Aligned_cols=177 Identities=25% Similarity=0.424 Sum_probs=161.9
Q ss_pred HHHHHhHHhHhhhhccccHHHHHHHHHhC-------------CCCCHHHHHHHHHHhhchhhcccchHHHHhhhhhhhHH
Q 020666 134 HLTAGAVGGAASSLVRVPTEVIKQRIQTG-------------QFTSAPDAVRLIVRREGLKGLFAGYGSFLLRDLPFDAI 200 (323)
Q Consensus 134 ~~~~g~~ag~~~~~i~~Pld~ik~r~q~~-------------~~~~~~~~~~~i~~~~G~~glyrG~~~~~~r~~~~~~~ 200 (323)
.+++|++||+++.++++|+|++|+|+|.+ +|++.++++++++++||+++||||+.+++++.+++.++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999975 46899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHhhcccChhHHHHHHHHHhHhHhhhcccHHHHHHHHHhcCC---CCCCCCHHHHHHHHHHhhCccc
Q 020666 201 QFCIYEQLLLGYKLAARRSLSNAENAIVGAFAGAITGAVTAPLDVIKTRLMVQGS---ANQYKGICDCVSTIAREEGIST 277 (323)
Q Consensus 201 ~~~~ye~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~d~vk~r~q~~~~---~~~~~~~~~~~~~i~~~~G~~g 277 (323)
+|.+||.+|+.+... ....+....+++|++||+++.++++|+|+||+|+|.+.. ...|.+.++++++|+++||++|
T Consensus 84 ~f~~ye~~k~~~~~~-~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~g 162 (303)
T 2lck_A 84 RIGLYDSVKQFYTKG-SEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRG 162 (303)
T ss_dssp TTTHHHHHHHHHSCC-CSSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHhcC-CcCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhh
Confidence 999999999877432 123566788999999999999999999999999999853 3478999999999999999999
Q ss_pred cccchhHHHHHHhhhhhHHHHHHHHHHHHHhccc
Q 020666 278 LFKGMGPRVLWIGIGGSIFFGVLEKTKEVLAQRH 311 (323)
Q Consensus 278 lyrG~~~~~~~~~~~~~i~~~~ye~~~~~l~~~~ 311 (323)
||||+.++++|.+|.+++.|.+||.+|+.+.+..
T Consensus 163 lyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~ 196 (303)
T 2lck_A 163 LWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN 196 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred hhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999887654
No 5
>1ejp_A Syndecan-4; symmetric-parallel-interwinded dimer, signaling protein; NMR {Synthetic} SCOP: j.80.1.1 PDB: 1ejq_A
Probab=29.68 E-value=30 Score=18.09 Aligned_cols=12 Identities=25% Similarity=0.590 Sum_probs=9.5
Q ss_pred CCCCCCCCCCCC
Q 020666 312 FNSQDSSSFKLD 323 (323)
Q Consensus 312 ~~~~~~~~~~~~ 323 (323)
..++++|+|.||
T Consensus 2 mrKKDEGSY~Ld 13 (28)
T 1ejp_A 2 MKKKDEGSYDLG 13 (28)
T ss_dssp CSCCCCCCCCCC
T ss_pred cccccccccccC
Confidence 457788999887
No 6
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=19.97 E-value=75 Score=21.50 Aligned_cols=35 Identities=11% Similarity=0.182 Sum_probs=26.4
Q ss_pred chhhcccchHHHHhhhhhhhHHHHHHHHHHHHHhH
Q 020666 179 GLKGLFAGYGSFLLRDLPFDAIQFCIYEQLLLGYK 213 (323)
Q Consensus 179 G~~glyrG~~~~~~r~~~~~~~~~~~ye~~~~~~~ 213 (323)
|+...+|-+...++..+|...+.+.+|++.++..+
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne 67 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFE 67 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 34445555667788899999999999999887654
No 7
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=19.00 E-value=19 Score=22.79 Aligned_cols=20 Identities=20% Similarity=0.296 Sum_probs=16.9
Q ss_pred CCHHHHHHHHHHhhCccccc
Q 020666 260 KGICDCVSTIAREEGISTLF 279 (323)
Q Consensus 260 ~~~~~~~~~i~~~~G~~gly 279 (323)
+++.+.+.+||+++|+.|++
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 45778899999999998876
No 8
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=18.85 E-value=87 Score=21.18 Aligned_cols=38 Identities=3% Similarity=-0.027 Sum_probs=27.2
Q ss_pred cccccchhHHHHHHhhhhhHHHHHHHHHHHHHhcccCC
Q 020666 276 STLFKGMGPRVLWIGIGGSIFFGVLEKTKEVLAQRHFN 313 (323)
Q Consensus 276 ~glyrG~~~~~~~~~~~~~i~~~~ye~~~~~l~~~~~~ 313 (323)
...+|-+.-.++..+|..++.+.+|+..++.-....-+
T Consensus 35 ~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~rK 72 (81)
T 3tgu_G 35 PNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKRK 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33344456667888999999999999998876554443
No 9
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=16.81 E-value=1.5e+02 Score=20.00 Aligned_cols=36 Identities=14% Similarity=0.217 Sum_probs=27.7
Q ss_pred hchhhcccchHHHHhhhhhhhHHHHHHHHHHHHHhH
Q 020666 178 EGLKGLFAGYGSFLLRDLPFDAIQFCIYEQLLLGYK 213 (323)
Q Consensus 178 ~G~~glyrG~~~~~~r~~~~~~~~~~~ye~~~~~~~ 213 (323)
+|+...+|-+...++..+|...+.+.+|++.++...
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e 67 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFE 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHH
Confidence 345556666777788889999999999999887654
No 10
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=9.47 E-value=2.3e+02 Score=19.65 Aligned_cols=40 Identities=13% Similarity=0.154 Sum_probs=31.3
Q ss_pred hCccccccchhHHHHHHhhhhhHHHHHHHHHHHHHhcccC
Q 020666 273 EGISTLFKGMGPRVLWIGIGGSIFFGVLEKTKEVLAQRHF 312 (323)
Q Consensus 273 ~G~~glyrG~~~~~~~~~~~~~i~~~~ye~~~~~l~~~~~ 312 (323)
.|+...+|-+.-+++..+|..++.+.+|+..++.....+.
T Consensus 42 ~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~e~l~~ 81 (93)
T 3cx5_H 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNEFLYS 81 (93)
T ss_dssp TTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hcchHHHHHHHhcceEEechHhHHHHHHHHHHHHHHHHhc
Confidence 4667777777778888899999999999998887655443
Done!