BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020667
         (323 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3U31|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
           Medium And Long Chain Fatty Acyl Lysine
 pdb|3U3D|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
           Medium And Long Chain Fatty Acyl Lysine
          Length = 290

 Score = 28.5 bits (62), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 138 CDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLV 197
           CD L+ ++ +S++    TNL    CK  K ++  +I+KT +  +  +   C + +E+  V
Sbjct: 217 CDLLL-VIGTSSTVSTATNLCHFACKKKKKIVEINISKTYITNKMSDYHVCAKFSELTKV 275

Query: 198 DDV 200
            ++
Sbjct: 276 ANI 278


>pdb|3JWP|A Chain A, Crystal Structure Of Plasmodium Falciparum Sir2a
           (Pf13_0152) In Complex With Amp
          Length = 265

 Score = 28.1 bits (61), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 138 CDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLV 197
           CD L+ ++ +S++    TNL    CK  K ++  +I+KT +  +  +   C + +E+  V
Sbjct: 192 CDLLL-VIGTSSTVSTATNLCHFACKKKKKIVEINISKTYITNKXSDYHVCAKFSELTKV 250

Query: 198 DDV 200
            ++
Sbjct: 251 ANI 253


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.135    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,904,837
Number of Sequences: 62578
Number of extensions: 280071
Number of successful extensions: 903
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 901
Number of HSP's gapped (non-prelim): 2
length of query: 323
length of database: 14,973,337
effective HSP length: 99
effective length of query: 224
effective length of database: 8,778,115
effective search space: 1966297760
effective search space used: 1966297760
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.3 bits)