Query 020667
Match_columns 323
No_of_seqs 244 out of 2243
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 04:12:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020667.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020667hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.8 7.5E-20 1.6E-24 188.5 15.0 234 4-273 620-906 (1153)
2 PLN00113 leucine-rich repeat r 99.8 5.1E-19 1.1E-23 180.9 13.7 235 15-267 86-339 (968)
3 PLN00113 leucine-rich repeat r 99.8 2.1E-18 4.6E-23 176.4 12.0 37 21-59 138-174 (968)
4 PLN03210 Resistant to P. syrin 99.7 7.6E-17 1.7E-21 166.4 14.6 66 178-254 778-843 (1153)
5 KOG0444 Cytoskeletal regulator 99.4 1.9E-14 4.1E-19 132.6 -4.9 238 14-267 24-298 (1255)
6 KOG0444 Cytoskeletal regulator 99.3 1.6E-13 3.5E-18 126.6 -1.2 156 14-189 95-256 (1255)
7 KOG0472 Leucine-rich repeat pr 99.3 8.9E-15 1.9E-19 128.2 -10.1 229 3-270 53-307 (565)
8 KOG4194 Membrane glycoprotein 99.2 4.4E-12 9.5E-17 116.3 1.9 86 174-267 361-446 (873)
9 KOG0472 Leucine-rich repeat pr 99.2 2E-14 4.3E-19 126.1 -12.7 152 74-247 152-308 (565)
10 KOG4194 Membrane glycoprotein 99.2 8.5E-12 1.8E-16 114.5 3.6 231 14-267 94-348 (873)
11 PRK15387 E3 ubiquitin-protein 99.2 1.5E-10 3.3E-15 113.2 10.8 85 179-285 383-467 (788)
12 KOG4341 F-box protein containi 99.1 7.3E-13 1.6E-17 116.9 -5.6 239 21-274 162-440 (483)
13 PRK15370 E3 ubiquitin-protein 99.0 8.8E-10 1.9E-14 108.2 10.3 110 24-162 179-293 (754)
14 KOG4341 F-box protein containi 99.0 3.7E-12 8E-17 112.5 -6.6 232 23-269 138-381 (483)
15 PRK15370 E3 ubiquitin-protein 99.0 3.6E-10 7.8E-15 110.9 5.7 154 82-267 262-422 (754)
16 KOG0618 Serine/threonine phosp 99.0 7.9E-11 1.7E-15 113.3 -1.2 215 23-272 241-488 (1081)
17 KOG4658 Apoptotic ATPase [Sign 98.9 5E-09 1.1E-13 104.6 7.9 219 18-254 567-847 (889)
18 cd00116 LRR_RI Leucine-rich re 98.9 3.3E-10 7.2E-15 101.4 -0.6 234 21-267 21-285 (319)
19 KOG0617 Ras suppressor protein 98.9 1.7E-10 3.7E-15 90.6 -2.3 165 17-230 28-192 (264)
20 PRK15387 E3 ubiquitin-protein 98.8 2.2E-08 4.8E-13 98.2 11.2 87 153-267 343-429 (788)
21 KOG0617 Ras suppressor protein 98.8 9.5E-11 2.1E-15 92.0 -4.7 104 140-257 90-193 (264)
22 KOG3207 Beta-tubulin folding c 98.8 1.1E-09 2.4E-14 97.5 0.4 208 21-243 119-333 (505)
23 cd00116 LRR_RI Leucine-rich re 98.7 2.3E-09 5E-14 95.9 0.3 231 18-267 47-314 (319)
24 KOG0618 Serine/threonine phosp 98.6 7.5E-09 1.6E-13 100.0 0.4 124 153-291 360-486 (1081)
25 KOG4658 Apoptotic ATPase [Sign 98.6 4.4E-08 9.5E-13 98.0 4.9 213 21-253 543-787 (889)
26 KOG4237 Extracellular matrix p 98.6 1.1E-08 2.4E-13 90.3 0.2 256 23-304 67-408 (498)
27 KOG2120 SCF ubiquitin ligase, 98.5 5.8E-09 1.3E-13 88.9 -4.1 189 23-247 185-374 (419)
28 KOG2120 SCF ubiquitin ligase, 98.5 3.1E-09 6.6E-14 90.5 -5.9 186 49-270 185-373 (419)
29 PRK15386 type III secretion pr 98.4 1.3E-06 2.8E-11 79.4 8.4 150 107-290 50-209 (426)
30 PF14580 LRR_9: Leucine-rich r 98.3 6.1E-07 1.3E-11 72.6 3.3 130 21-186 17-148 (175)
31 PRK15386 type III secretion pr 98.2 6.7E-06 1.5E-10 74.7 8.7 32 178-220 156-187 (426)
32 KOG4237 Extracellular matrix p 98.1 3.4E-07 7.3E-12 81.1 -2.6 213 15-247 84-357 (498)
33 KOG1947 Leucine rich repeat pr 98.0 2.9E-07 6.2E-12 87.1 -3.7 140 21-185 186-328 (482)
34 PF13855 LRR_8: Leucine rich r 98.0 1E-05 2.2E-10 53.5 4.7 59 23-92 1-59 (61)
35 KOG3207 Beta-tubulin folding c 98.0 4.6E-06 1E-10 74.9 3.5 64 47-119 119-182 (505)
36 PF13855 LRR_8: Leucine rich r 98.0 2.2E-05 4.7E-10 52.0 5.7 36 208-245 23-58 (61)
37 KOG1259 Nischarin, modulator o 97.9 3.3E-06 7.1E-11 72.5 0.2 39 208-247 372-410 (490)
38 PF14580 LRR_9: Leucine-rich r 97.8 4.4E-05 9.6E-10 61.8 6.2 36 150-187 62-97 (175)
39 COG4886 Leucine-rich repeat (L 97.8 2.6E-05 5.7E-10 72.1 4.4 92 142-249 199-290 (394)
40 KOG1947 Leucine rich repeat pr 97.8 2.4E-06 5.3E-11 80.7 -2.6 93 21-122 212-308 (482)
41 PLN03150 hypothetical protein; 97.5 0.00012 2.6E-09 71.6 5.3 82 24-119 419-500 (623)
42 COG4886 Leucine-rich repeat (L 97.5 0.0003 6.5E-09 65.0 7.1 112 141-269 175-286 (394)
43 KOG0532 Leucine-rich repeat (L 97.4 4.5E-06 9.8E-11 77.3 -5.3 170 77-270 93-270 (722)
44 KOG3665 ZYG-1-like serine/thre 97.4 3.2E-05 6.9E-10 75.8 -0.1 35 149-187 170-204 (699)
45 KOG3665 ZYG-1-like serine/thre 97.4 7.2E-05 1.6E-09 73.4 1.7 38 80-119 146-183 (699)
46 KOG1259 Nischarin, modulator o 97.4 1.9E-05 4.1E-10 68.0 -2.2 59 151-220 351-409 (490)
47 PLN03150 hypothetical protein; 97.3 0.00042 9E-09 67.9 6.2 102 154-268 420-523 (623)
48 KOG0532 Leucine-rich repeat (L 97.3 3.8E-05 8.2E-10 71.4 -1.4 36 80-119 164-199 (722)
49 PF12799 LRR_4: Leucine Rich r 97.1 0.00055 1.2E-08 41.8 2.8 37 23-63 1-37 (44)
50 PF12799 LRR_4: Leucine Rich r 96.5 0.004 8.7E-08 38.0 3.6 40 152-195 1-40 (44)
51 KOG1859 Leucine-rich repeat pr 96.4 0.00019 4.1E-09 68.8 -4.3 104 77-189 182-290 (1096)
52 KOG3864 Uncharacterized conser 95.9 0.00089 1.9E-08 54.6 -2.1 65 46-119 122-186 (221)
53 KOG1644 U2-associated snRNP A' 95.8 0.02 4.3E-07 47.0 5.3 88 21-119 62-150 (233)
54 KOG2982 Uncharacterized conser 95.8 0.0043 9.4E-08 53.7 1.5 70 176-253 197-266 (418)
55 KOG2123 Uncharacterized conser 95.7 0.00063 1.4E-08 58.2 -3.9 102 151-267 18-124 (388)
56 KOG1859 Leucine-rich repeat pr 95.3 0.0019 4.1E-08 62.3 -2.5 114 138-269 173-288 (1096)
57 KOG2739 Leucine-rich acidic nu 95.2 0.01 2.2E-07 50.4 1.8 112 46-190 40-155 (260)
58 KOG3864 Uncharacterized conser 95.1 0.003 6.5E-08 51.6 -1.6 88 154-250 103-190 (221)
59 KOG0531 Protein phosphatase 1, 94.6 0.0077 1.7E-07 56.1 -0.6 37 151-189 161-197 (414)
60 KOG2982 Uncharacterized conser 94.2 0.073 1.6E-06 46.4 4.6 88 80-188 69-156 (418)
61 KOG2123 Uncharacterized conser 94.0 0.0042 9.2E-08 53.3 -3.3 83 21-120 17-99 (388)
62 PF13504 LRR_7: Leucine rich r 93.5 0.055 1.2E-06 25.6 1.5 16 237-253 2-17 (17)
63 PF00560 LRR_1: Leucine Rich R 93.3 0.054 1.2E-06 27.4 1.3 19 237-256 1-19 (22)
64 KOG1909 Ran GTPase-activating 93.1 0.016 3.5E-07 51.2 -1.3 91 21-119 56-167 (382)
65 KOG2739 Leucine-rich acidic nu 92.1 0.064 1.4E-06 45.6 1.1 93 150-250 63-157 (260)
66 KOG1644 U2-associated snRNP A' 91.6 0.32 7E-06 40.1 4.5 82 24-120 43-124 (233)
67 KOG1909 Ran GTPase-activating 89.7 0.038 8.3E-07 48.9 -2.5 242 21-269 28-307 (382)
68 smart00367 LRR_CC Leucine-rich 87.5 0.28 6.1E-06 25.9 0.9 16 23-38 2-17 (26)
69 KOG0531 Protein phosphatase 1, 86.8 0.26 5.6E-06 45.9 0.8 80 21-119 93-172 (414)
70 PF13306 LRR_5: Leucine rich r 85.1 6.3 0.00014 29.5 7.7 101 150-267 10-110 (129)
71 KOG4579 Leucine-rich repeat (L 82.7 0.07 1.5E-06 41.2 -4.0 101 154-267 29-130 (177)
72 KOG4579 Leucine-rich repeat (L 82.0 0.21 4.6E-06 38.6 -1.7 37 80-120 75-111 (177)
73 PF13306 LRR_5: Leucine rich r 79.8 8.3 0.00018 28.8 6.6 81 173-267 7-88 (129)
74 smart00370 LRR Leucine-rich re 79.5 1.3 2.8E-05 23.1 1.4 21 22-44 1-21 (26)
75 smart00369 LRR_TYP Leucine-ric 79.5 1.3 2.8E-05 23.1 1.4 21 22-44 1-21 (26)
76 PF13516 LRR_6: Leucine Rich r 56.9 6.2 0.00013 20.0 0.9 10 50-59 3-12 (24)
77 COG5238 RNA1 Ran GTPase-activa 55.1 4.5 9.8E-05 35.2 0.3 97 21-119 28-130 (388)
78 smart00364 LRR_BAC Leucine-ric 49.7 11 0.00024 19.9 1.2 18 236-254 2-19 (26)
79 smart00365 LRR_SD22 Leucine-ri 47.4 16 0.00034 19.3 1.5 16 22-38 1-16 (26)
80 COG5238 RNA1 Ran GTPase-activa 31.7 22 0.00048 31.1 0.9 15 234-248 212-226 (388)
81 KOG3763 mRNA export factor TAP 24.3 28 0.0006 33.4 0.3 38 21-59 216-254 (585)
82 smart00368 LRR_RI Leucine rich 23.2 54 0.0012 17.3 1.2 14 23-37 2-15 (28)
83 PF05725 FNIP: FNIP Repeat; I 21.9 96 0.0021 18.4 2.3 12 277-288 30-41 (44)
84 smart00446 LRRcap occurring C- 21.3 50 0.0011 17.5 0.8 13 45-57 9-21 (26)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.82 E-value=7.5e-20 Score=188.48 Aligned_cols=234 Identities=21% Similarity=0.296 Sum_probs=143.8
Q ss_pred ccccccccccccccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCC
Q 020667 4 SINVERIWLSQVTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQ 83 (323)
Q Consensus 4 ~~~l~~i~~~~p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~ 83 (323)
..+++++|. ++. .+++|++|++++|..++.+ |. ++.+++|+.|++++|..+. .++. .+..+++
T Consensus 620 ~s~l~~L~~----~~~-~l~~Lk~L~Ls~~~~l~~i-p~--ls~l~~Le~L~L~~c~~L~--~lp~-------si~~L~~ 682 (1153)
T PLN03210 620 GSKLEKLWD----GVH-SLTGLRNIDLRGSKNLKEI-PD--LSMATNLETLKLSDCSSLV--ELPS-------SIQYLNK 682 (1153)
T ss_pred Ccccccccc----ccc-cCCCCCEEECCCCCCcCcC-Cc--cccCCcccEEEecCCCCcc--ccch-------hhhccCC
Confidence 345666775 356 7889999999887777764 65 6788999999999988876 3333 3337888
Q ss_pred cCEEecccccccccccccCccccCCCCccEEEEcCCchhhh---hccCCcceeeecCCCCccccCCC-------------
Q 020667 84 LQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCPKFME---RYNRTTNILTERGCDHLVDLVPS------------- 147 (323)
Q Consensus 84 L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp~~~~---~l~~L~~L~~i~~~~~l~~l~~~------------- 147 (323)
|+.|++++|..++.+|... .+++|+.|++++|..+.. ..++++.| .+.++. +..+|..
T Consensus 683 L~~L~L~~c~~L~~Lp~~i----~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L-~L~~n~-i~~lP~~~~l~~L~~L~l~~ 756 (1153)
T PLN03210 683 LEDLDMSRCENLEILPTGI----NLKSLYRLNLSGCSRLKSFPDISTNISWL-DLDETA-IEEFPSNLRLENLDELILCE 756 (1153)
T ss_pred CCEEeCCCCCCcCccCCcC----CCCCCCEEeCCCCCCccccccccCCcCee-ecCCCc-cccccccccccccccccccc
Confidence 8888888888888877652 577888888887743211 01122222 111111 1112111
Q ss_pred -----------------CCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCccccccccccc
Q 020667 148 -----------------STSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFR 210 (323)
Q Consensus 148 -----------------~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~ 210 (323)
...+++|+.|++++|+.+..+ |..++++++|+.|++++|..++.+|. . ..++
T Consensus 757 ~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~l--P~si~~L~~L~~L~Ls~C~~L~~LP~--------~-~~L~ 825 (1153)
T PLN03210 757 MKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVEL--PSSIQNLHKLEHLEIENCINLETLPT--------G-INLE 825 (1153)
T ss_pred cchhhccccccccchhhhhccccchheeCCCCCCcccc--ChhhhCCCCCCEEECCCCCCcCeeCC--------C-CCcc
Confidence 001234555555555555544 34455566666666666655555541 1 1345
Q ss_pred ccCeeecccccccc--------------------eecCCCccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEccCc
Q 020667 211 ELKELKLLNLESLT--------------------SFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQWPGE 270 (323)
Q Consensus 211 ~L~~L~l~~c~~L~--------------------~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~~ 270 (323)
+|+.|++++|..++ .+|. ....+++|++|++++|+.++.+|.....+++|+.+++.+|
T Consensus 826 sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~--si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 826 SLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPW--WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred ccCEEECCCCCccccccccccccCEeECCCCCCccChH--HHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 55555555554443 3332 2356788889999999998888887778888888888776
Q ss_pred ccc
Q 020667 271 ARW 273 (323)
Q Consensus 271 ~~~ 273 (323)
...
T Consensus 904 ~~L 906 (1153)
T PLN03210 904 GAL 906 (1153)
T ss_pred ccc
Confidence 543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.79 E-value=5.1e-19 Score=180.89 Aligned_cols=235 Identities=15% Similarity=0.095 Sum_probs=134.1
Q ss_pred cccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCC-----------CCceEEeeccc--cccCCCcccc
Q 020667 15 VTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECP-----------VLKELIVMDNQ--EERKNNNVMF 81 (323)
Q Consensus 15 p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~-----------~l~~l~~~~~~--~~~~~~~~~l 81 (323)
|..+. .+++|++|++++ +++.+.+|..++..+++|++|+++++. .++.+.+..+. +..+..+..+
T Consensus 86 ~~~~~-~l~~L~~L~Ls~-n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l 163 (968)
T PLN00113 86 SSAIF-RLPYIQTINLSN-NQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSF 163 (968)
T ss_pred ChHHh-CCCCCCEEECCC-CccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcC
Confidence 45566 889999999988 567665687766688999999988653 23333333332 3344455567
Q ss_pred CCcCEEecccccccccccccCccccCCCCccEEEEcCC------chhhhhccCCcceeeecCCCCccccCCCCCCCCCCC
Q 020667 82 PQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGC------PKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLT 155 (323)
Q Consensus 82 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c------p~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~ 155 (323)
++|++|+++++.....+|... ..+++|++|++++| |..++.+.+|+.| .+.++...+.+|..+..+++|+
T Consensus 164 ~~L~~L~L~~n~l~~~~p~~~---~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L-~L~~n~l~~~~p~~l~~l~~L~ 239 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPNSL---TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI-YLGYNNLSGEIPYEIGGLTSLN 239 (968)
T ss_pred CCCCEEECccCcccccCChhh---hhCcCCCeeeccCCCCcCcCChHHcCcCCccEE-ECcCCccCCcCChhHhcCCCCC
Confidence 777777777664444444442 36667777777666 3334444555555 4555555555666666667777
Q ss_pred EEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccC
Q 020667 156 NLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKF 235 (323)
Q Consensus 156 ~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l 235 (323)
+|++++|.....+ +..++++++|+.|++++|...+.++ ..+..+++|+.|++++|.-...++. ....+
T Consensus 240 ~L~L~~n~l~~~~--p~~l~~l~~L~~L~L~~n~l~~~~p--------~~l~~l~~L~~L~Ls~n~l~~~~p~--~~~~l 307 (968)
T PLN00113 240 HLDLVYNNLTGPI--PSSLGNLKNLQYLFLYQNKLSGPIP--------PSIFSLQKLISLDLSDNSLSGEIPE--LVIQL 307 (968)
T ss_pred EEECcCceecccc--ChhHhCCCCCCEEECcCCeeeccCc--------hhHhhccCcCEEECcCCeeccCCCh--hHcCC
Confidence 7777666533333 4456666677777766665433333 2334556666666665421112221 12344
Q ss_pred CcccEEeecCCCCCcccCCCCCCCCCcceeEc
Q 020667 236 PSLERLVLDDCPSMKIFSEGNSSTPKLHEVQW 267 (323)
Q Consensus 236 ~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l 267 (323)
++|++|++++|...+.+|..+..+++|+.|++
T Consensus 308 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 339 (968)
T PLN00113 308 QNLEILHLFSNNFTGKIPVALTSLPRLQVLQL 339 (968)
T ss_pred CCCcEEECCCCccCCcCChhHhcCCCCCEEEC
Confidence 55555555554444444444444555555555
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.76 E-value=2.1e-18 Score=176.36 Aligned_cols=37 Identities=24% Similarity=0.283 Sum_probs=18.9
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecC
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVEC 59 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c 59 (323)
.+++|++|++++ +.+.+.+|.. ++.+++|++|+++++
T Consensus 138 ~l~~L~~L~Ls~-n~~~~~~p~~-~~~l~~L~~L~L~~n 174 (968)
T PLN00113 138 SIPNLETLDLSN-NMLSGEIPND-IGSFSSLKVLDLGGN 174 (968)
T ss_pred ccCCCCEEECcC-CcccccCChH-HhcCCCCCEEECccC
Confidence 455555555555 3344434443 455555555555544
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.71 E-value=7.6e-17 Score=166.35 Aligned_cols=66 Identities=21% Similarity=0.402 Sum_probs=55.3
Q ss_pred ccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCC
Q 020667 178 VRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSE 254 (323)
Q Consensus 178 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 254 (323)
++|+.|++++|+.+..+| ..++.+++|+.|+|.+|.+++.+|... .+++|++|++++|..++.+|.
T Consensus 778 ~sL~~L~Ls~n~~l~~lP--------~si~~L~~L~~L~Ls~C~~L~~LP~~~---~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELP--------SSIQNLHKLEHLEIENCINLETLPTGI---NLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred ccchheeCCCCCCccccC--------hhhhCCCCCCEEECCCCCCcCeeCCCC---CccccCEEECCCCCccccccc
Confidence 578888888888888887 456789999999999999999998754 688999999999988776654
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.35 E-value=1.9e-14 Score=132.60 Aligned_cols=238 Identities=16% Similarity=0.177 Sum_probs=126.2
Q ss_pred ccccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecC------------CCCceEEeeccc---cccCCCc
Q 020667 14 QVTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVEC------------PVLKELIVMDNQ---EERKNNN 78 (323)
Q Consensus 14 ~p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c------------~~l~~l~~~~~~---~~~~~~~ 78 (323)
.|..+. .++.++.|.|.. .++..+ |.. ++.+.+|++|.++++ +.++.+.+-.+. ..+|+.+
T Consensus 24 FP~~v~-qMt~~~WLkLnr-t~L~~v-PeE-L~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~di 99 (1255)
T KOG0444|consen 24 FPHDVE-QMTQMTWLKLNR-TKLEQV-PEE-LSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDI 99 (1255)
T ss_pred CchhHH-HhhheeEEEech-hhhhhC-hHH-HHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchh
Confidence 455566 677777777776 666664 655 567777777765432 233322222221 3466777
Q ss_pred cccCCcCEEecccccccccccccCccccCCCCccEEEEcCC-----chhh-hhccCCcceeeecCCCCccccCCCCCCCC
Q 020667 79 VMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGC-----PKFM-ERYNRTTNILTERGCDHLVDLVPSSTSFQ 152 (323)
Q Consensus 79 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c-----p~~~-~~l~~L~~L~~i~~~~~l~~l~~~~~~l~ 152 (323)
..+..|..|+++.+ .+++.|.... ...++-.|+++++ |+.+ -.++.|-.| ....+.++.+||.+..+.
T Consensus 100 F~l~dLt~lDLShN-qL~EvP~~LE---~AKn~iVLNLS~N~IetIPn~lfinLtDLLfL--DLS~NrLe~LPPQ~RRL~ 173 (1255)
T KOG0444|consen 100 FRLKDLTILDLSHN-QLREVPTNLE---YAKNSIVLNLSYNNIETIPNSLFINLTDLLFL--DLSNNRLEMLPPQIRRLS 173 (1255)
T ss_pred cccccceeeecchh-hhhhcchhhh---hhcCcEEEEcccCccccCCchHHHhhHhHhhh--ccccchhhhcCHHHHHHh
Confidence 77888888888876 5777776643 5566777777766 3221 122222222 233455666777666666
Q ss_pred CCCEEEeecCcCcceecchhHHhccccccEEEEccCc-ccceeeeccCcc-------------c--ccccccccccCeee
Q 020667 153 NLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCD-RITEIVLVDDVA-------------A--KDEVITFRELKELK 216 (323)
Q Consensus 153 ~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~-~l~~i~~~~~~~-------------~--~~~~~~~~~L~~L~ 216 (323)
.|++|.+++++... . ....+..+++|+.|.+++-. -+..+|..-.+. . +.-+-.+++|+.|+
T Consensus 174 ~LqtL~Ls~NPL~h-f-QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLN 251 (1255)
T KOG0444|consen 174 MLQTLKLSNNPLNH-F-QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLN 251 (1255)
T ss_pred hhhhhhcCCChhhH-H-HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheec
Confidence 66666666664211 1 00011122223333333211 111222110000 0 01123456666666
Q ss_pred cccccccceecCCCccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEc
Q 020667 217 LLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQW 267 (323)
Q Consensus 217 l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l 267 (323)
+++ .+++.+.... ..+..|++|+++. +.++.+|..++.++.|++|++
T Consensus 252 LS~-N~iteL~~~~--~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~ 298 (1255)
T KOG0444|consen 252 LSG-NKITELNMTE--GEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYA 298 (1255)
T ss_pred cCc-CceeeeeccH--HHHhhhhhhcccc-chhccchHHHhhhHHHHHHHh
Confidence 666 3566554432 4566677777766 566677777777777777766
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.31 E-value=1.6e-13 Score=126.57 Aligned_cols=156 Identities=15% Similarity=0.133 Sum_probs=94.6
Q ss_pred ccccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccc
Q 020667 14 QVTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLE 93 (323)
Q Consensus 14 ~p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 93 (323)
.|..+. .+..|..|+|+. +.++.+ |.. +..-.++-+|++|++ +++ .++.. -..++..|-+|+++++
T Consensus 95 iP~diF-~l~dLt~lDLSh-NqL~Ev-P~~-LE~AKn~iVLNLS~N-~Ie--tIPn~------lfinLtDLLfLDLS~N- 160 (1255)
T KOG0444|consen 95 IPTDIF-RLKDLTILDLSH-NQLREV-PTN-LEYAKNSIVLNLSYN-NIE--TIPNS------LFINLTDLLFLDLSNN- 160 (1255)
T ss_pred CCchhc-ccccceeeecch-hhhhhc-chh-hhhhcCcEEEEcccC-ccc--cCCch------HHHhhHhHhhhccccc-
Confidence 355555 566666666665 555553 444 455556666666643 233 22211 1225667788898876
Q ss_pred ccccccccCccccCCCCccEEEEcCCchhhh---hccCCcceee--ecCCC-CccccCCCCCCCCCCCEEEeecCcCcce
Q 020667 94 NFTSFCTSNLGILEFPSLKELWISGCPKFME---RYNRTTNILT--ERGCD-HLVDLVPSSTSFQNLTNLVVSCCKGLKI 167 (323)
Q Consensus 94 ~l~~~~~~~~~~~~l~~L~~L~l~~cp~~~~---~l~~L~~L~~--i~~~~-~l~~l~~~~~~l~~L~~L~l~~c~~l~~ 167 (323)
.+..+|+... .+.+|+.|.++++|-... .+++++.|.. +++-+ .+..+|.++..+.+|..++++.+ ++..
T Consensus 161 rLe~LPPQ~R---RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~ 236 (1255)
T KOG0444|consen 161 RLEMLPPQIR---RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPI 236 (1255)
T ss_pred hhhhcCHHHH---HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCc
Confidence 7888888854 888999999999975433 3444444432 22222 24566777777777777777644 4555
Q ss_pred ecchhHHhccccccEEEEccCc
Q 020667 168 VLTFSIAKTLVRLEYMEIESCD 189 (323)
Q Consensus 168 l~~~~~l~~l~~L~~L~l~~c~ 189 (323)
+ |..+.++++|+.|+++++.
T Consensus 237 v--Pecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 237 V--PECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred c--hHHHhhhhhhheeccCcCc
Confidence 4 5566677777777777653
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.29 E-value=8.9e-15 Score=128.25 Aligned_cols=229 Identities=14% Similarity=0.167 Sum_probs=144.2
Q ss_pred cccccccccccccccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccC
Q 020667 3 YSINVERIWLSQVTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFP 82 (323)
Q Consensus 3 ~~~~l~~i~~~~p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~ 82 (323)
+++++.++..+ +. +++.|.+|.+++ +++... |+. ++.+..++.|+++.... . .++ ..++.++
T Consensus 53 s~N~l~~l~~d----l~-nL~~l~vl~~~~-n~l~~l-p~a-ig~l~~l~~l~vs~n~l-s--~lp-------~~i~s~~ 114 (565)
T KOG0472|consen 53 SHNDLEVLRED----LK-NLACLTVLNVHD-NKLSQL-PAA-IGELEALKSLNVSHNKL-S--ELP-------EQIGSLI 114 (565)
T ss_pred ccCchhhccHh----hh-cccceeEEEecc-chhhhC-CHH-HHHHHHHHHhhcccchH-h--hcc-------HHHhhhh
Confidence 44555555552 55 788888888888 667665 444 67788888888775432 2 112 2222445
Q ss_pred CcCEEecccccccccccccCc--------------------cccCCCCccEEEEcCC------chhhhhccCCcceeeec
Q 020667 83 QLQYLKMFNLENFTSFCTSNL--------------------GILEFPSLKELWISGC------PKFMERYNRTTNILTER 136 (323)
Q Consensus 83 ~L~~L~l~~~~~l~~~~~~~~--------------------~~~~l~~L~~L~l~~c------p~~~~~l~~L~~L~~i~ 136 (323)
+|..|+.++. .+.+++.+.. ++..+.+|..+.+.++ |+.+. +..|+++ ..
T Consensus 115 ~l~~l~~s~n-~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~l--d~ 190 (565)
T KOG0472|consen 115 SLVKLDCSSN-ELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHL--DC 190 (565)
T ss_pred hhhhhhcccc-ceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhc--cc
Confidence 5555555443 3344443321 0113444444444443 11121 3334443 22
Q ss_pred CCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeee
Q 020667 137 GCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELK 216 (323)
Q Consensus 137 ~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~ 216 (323)
..+.++++|+.++.+.+|..|++.+++ +..+ | .+.++..|++|+++.+ .++-+++ .....++++..|+
T Consensus 191 ~~N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~l--P-ef~gcs~L~Elh~g~N-~i~~lpa-------e~~~~L~~l~vLD 258 (565)
T KOG0472|consen 191 NSNLLETLPPELGGLESLELLYLRRNK-IRFL--P-EFPGCSLLKELHVGEN-QIEMLPA-------EHLKHLNSLLVLD 258 (565)
T ss_pred chhhhhcCChhhcchhhhHHHHhhhcc-cccC--C-CCCccHHHHHHHhccc-HHHhhHH-------HHhcccccceeee
Confidence 233467888888888888888888764 4444 3 3567777888887654 4666652 2224789999999
Q ss_pred cccccccceecCCCccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEccCc
Q 020667 217 LLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQWPGE 270 (323)
Q Consensus 217 l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~~ 270 (323)
+.+ .+++++|.+. ..+.+|++|++++ +.+..+|..++++ .|++|.+.|.
T Consensus 259 LRd-Nklke~Pde~--clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 259 LRD-NKLKEVPDEI--CLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGN 307 (565)
T ss_pred ccc-cccccCchHH--HHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCC
Confidence 999 5899999876 5688999999977 6788999988888 8899988653
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.20 E-value=4.4e-12 Score=116.32 Aligned_cols=86 Identities=19% Similarity=0.139 Sum_probs=47.1
Q ss_pred HhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccC
Q 020667 174 AKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFS 253 (323)
Q Consensus 174 l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp 253 (323)
+.++.+|+.|+++.+.....|. + .. ..+..+++|+.|++.| .+++.++... +..+++|+.|++.++ -+.++.
T Consensus 361 f~~lssL~~LdLr~N~ls~~IE-D-aa---~~f~gl~~LrkL~l~g-Nqlk~I~krA-fsgl~~LE~LdL~~N-aiaSIq 432 (873)
T KOG4194|consen 361 FVGLSSLHKLDLRSNELSWCIE-D-AA---VAFNGLPSLRKLRLTG-NQLKSIPKRA-FSGLEALEHLDLGDN-AIASIQ 432 (873)
T ss_pred HHHhhhhhhhcCcCCeEEEEEe-c-ch---hhhccchhhhheeecC-ceeeecchhh-hccCcccceecCCCC-cceeec
Confidence 3445566666665543222221 1 11 1223477777777777 4777776654 456777777777664 344444
Q ss_pred CCCCCCCCcceeEc
Q 020667 254 EGNSSTPKLHEVQW 267 (323)
Q Consensus 254 ~~~~~~~~L~~L~l 267 (323)
........|++|.+
T Consensus 433 ~nAFe~m~Lk~Lv~ 446 (873)
T KOG4194|consen 433 PNAFEPMELKELVM 446 (873)
T ss_pred ccccccchhhhhhh
Confidence 33323337777776
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.20 E-value=2e-14 Score=126.10 Aligned_cols=152 Identities=18% Similarity=0.211 Sum_probs=108.3
Q ss_pred cCCCccccCCcCEEecccccccccccccCccccCCCCccEEEEcCC-----chhhhhccCCcceeeecCCCCccccCCCC
Q 020667 74 RKNNNVMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGC-----PKFMERYNRTTNILTERGCDHLVDLVPSS 148 (323)
Q Consensus 74 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c-----p~~~~~l~~L~~L~~i~~~~~l~~l~~~~ 148 (323)
.|..+..+.+|..|++.++ +++..+.... ++++|+.|+...+ |.-++.+.+|..| ++.. +++..+| ++
T Consensus 152 lp~~~~~~~~l~~l~~~~n-~l~~l~~~~i---~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~L-yL~~-Nki~~lP-ef 224 (565)
T KOG0472|consen 152 LPEDMVNLSKLSKLDLEGN-KLKALPENHI---AMKRLKHLDCNSNLLETLPPELGGLESLELL-YLRR-NKIRFLP-EF 224 (565)
T ss_pred CchHHHHHHHHHHhhcccc-chhhCCHHHH---HHHHHHhcccchhhhhcCChhhcchhhhHHH-Hhhh-cccccCC-CC
Confidence 3444446777777777775 5677776644 5888999887554 4444444455444 2222 3455565 67
Q ss_pred CCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecC
Q 020667 149 TSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCS 228 (323)
Q Consensus 149 ~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~ 228 (323)
.++..|++++++.+. ++.++ ...+.+++++..|++.++. ++++| ++++.+.+|++|++++ ..+..+|.
T Consensus 225 ~gcs~L~Elh~g~N~-i~~lp-ae~~~~L~~l~vLDLRdNk-lke~P--------de~clLrsL~rLDlSN-N~is~Lp~ 292 (565)
T KOG0472|consen 225 PGCSLLKELHVGENQ-IEMLP-AEHLKHLNSLLVLDLRDNK-LKEVP--------DEICLLRSLERLDLSN-NDISSLPY 292 (565)
T ss_pred CccHHHHHHHhcccH-HHhhH-HHHhcccccceeeeccccc-cccCc--------hHHHHhhhhhhhcccC-CccccCCc
Confidence 888899999998764 55442 3456689999999999864 88888 6778899999999999 57888887
Q ss_pred CCccccCCcccEEeecCCC
Q 020667 229 GNCAFKFPSLERLVLDDCP 247 (323)
Q Consensus 229 ~~~~~~l~~L~~L~l~~c~ 247 (323)
+- +++ .|+.|.+.++|
T Consensus 293 sL--gnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 293 SL--GNL-HLKFLALEGNP 308 (565)
T ss_pred cc--ccc-eeeehhhcCCc
Confidence 54 667 78888888865
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.20 E-value=8.5e-12 Score=114.48 Aligned_cols=231 Identities=14% Similarity=0.186 Sum_probs=128.9
Q ss_pred ccccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccc
Q 020667 14 QVTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLE 93 (323)
Q Consensus 14 ~p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 93 (323)
++.++. +++||+++++.+ +.++.+ |.. .+...+|+.|++.++. +.. +. ...+..++.|+.|+++.+
T Consensus 94 d~~~f~-nl~nLq~v~l~~-N~Lt~I-P~f-~~~sghl~~L~L~~N~-I~s--v~------se~L~~l~alrslDLSrN- 159 (873)
T KOG4194|consen 94 DFEFFY-NLPNLQEVNLNK-NELTRI-PRF-GHESGHLEKLDLRHNL-ISS--VT------SEELSALPALRSLDLSRN- 159 (873)
T ss_pred cHHHHh-cCCcceeeeecc-chhhhc-ccc-cccccceeEEeeeccc-ccc--cc------HHHHHhHhhhhhhhhhhc-
Confidence 355566 888888888887 777764 763 3345568888887653 221 11 112336788888888865
Q ss_pred ccccccccCccccCCCCccEEEEcCCch------hhhhccCCcceeeecCCCCccccCCCCC-CCCCCCEEEeecCcCcc
Q 020667 94 NFTSFCTSNLGILEFPSLKELWISGCPK------FMERYNRTTNILTERGCDHLVDLVPSST-SFQNLTNLVVSCCKGLK 166 (323)
Q Consensus 94 ~l~~~~~~~~~~~~l~~L~~L~l~~cp~------~~~~l~~L~~L~~i~~~~~l~~l~~~~~-~l~~L~~L~l~~c~~l~ 166 (323)
.+..++.... ..-.++++|+++++.- .++.+.+|..| -..-+.++.+|+... ++++|+.|++.++. ++
T Consensus 160 ~is~i~~~sf--p~~~ni~~L~La~N~It~l~~~~F~~lnsL~tl--kLsrNrittLp~r~Fk~L~~L~~LdLnrN~-ir 234 (873)
T KOG4194|consen 160 LISEIPKPSF--PAKVNIKKLNLASNRITTLETGHFDSLNSLLTL--KLSRNRITTLPQRSFKRLPKLESLDLNRNR-IR 234 (873)
T ss_pred hhhcccCCCC--CCCCCceEEeeccccccccccccccccchheee--ecccCcccccCHHHhhhcchhhhhhccccc-ee
Confidence 5566655422 1225788888887731 12223333333 122345566665443 37778888777653 32
Q ss_pred eecchhHHhccccccEEEEccCc-------------ccceeeeccCcc---cccccccccccCeeecccccccceecCCC
Q 020667 167 IVLTFSIAKTLVRLEYMEIESCD-------------RITEIVLVDDVA---AKDEVITFRELKELKLLNLESLTSFCSGN 230 (323)
Q Consensus 167 ~l~~~~~l~~l~~L~~L~l~~c~-------------~l~~i~~~~~~~---~~~~~~~~~~L~~L~l~~c~~L~~l~~~~ 230 (323)
..- ...+.+|++|+.|.+..+. +++.+-...+.. ....+..+++|+.|+++. ..+.++....
T Consensus 235 ive-~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~-NaI~rih~d~ 312 (873)
T KOG4194|consen 235 IVE-GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY-NAIQRIHIDS 312 (873)
T ss_pred eeh-hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccch-hhhheeecch
Confidence 221 1235667777766654432 222221111100 112234566777777776 4666665555
Q ss_pred ccccCCcccEEeecCCCCCcccCCCC-CCCCCcceeEc
Q 020667 231 CAFKFPSLERLVLDDCPSMKIFSEGN-SSTPKLHEVQW 267 (323)
Q Consensus 231 ~~~~l~~L~~L~l~~c~~l~~lp~~~-~~~~~L~~L~l 267 (323)
| ...++|++|++++ +.+++++++. ..+..|++|.+
T Consensus 313 W-sftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnL 348 (873)
T KOG4194|consen 313 W-SFTQKLKELDLSS-NRITRLDEGSFRVLSQLEELNL 348 (873)
T ss_pred h-hhcccceeEeccc-cccccCChhHHHHHHHhhhhcc
Confidence 4 3456777777766 5666666653 34567777777
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.17 E-value=1.5e-10 Score=113.19 Aligned_cols=85 Identities=16% Similarity=0.092 Sum_probs=60.4
Q ss_pred cccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCCC
Q 020667 179 RLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSS 258 (323)
Q Consensus 179 ~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~ 258 (323)
+|+.|++++|. +..+| ...++|+.|+++++ .++.+|.. ..+|+.|++++ +.++.+|..+..
T Consensus 383 ~L~~LdLs~N~-Lt~LP-----------~l~s~L~~LdLS~N-~LssIP~l-----~~~L~~L~Ls~-NqLt~LP~sl~~ 443 (788)
T PRK15387 383 GLKELIVSGNR-LTSLP-----------VLPSELKELMVSGN-RLTSLPML-----PSGLLSLSVYR-NQLTRLPESLIH 443 (788)
T ss_pred ccceEEecCCc-ccCCC-----------CcccCCCEEEccCC-cCCCCCcc-----hhhhhhhhhcc-CcccccChHHhh
Confidence 56666666653 44444 13467888888885 57766531 34788899977 567889998888
Q ss_pred CCCcceeEccCccccccccchhhhcee
Q 020667 259 TPKLHEVQWPGEARWAWKDDLNTTIQK 285 (323)
Q Consensus 259 ~~~L~~L~l~~~~~~~~~~~l~~~l~~ 285 (323)
+++|+.|++ ..|.+.+..+..+..
T Consensus 444 L~~L~~LdL---s~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 444 LSSETTVNL---EGNPLSERTLQALRE 467 (788)
T ss_pred ccCCCeEEC---CCCCCCchHHHHHHH
Confidence 999999999 777787777666643
No 12
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.15 E-value=7.3e-13 Score=116.86 Aligned_cols=239 Identities=20% Similarity=0.243 Sum_probs=123.8
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCT 100 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 100 (323)
++||+++|.+.+|.++++..-.++...++.|++|++..|.+++...+..... .+++|++|+++.|+.+.+-..
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~-------gC~kL~~lNlSwc~qi~~~gv 234 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE-------GCRKLKYLNLSWCPQISGNGV 234 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH-------hhhhHHHhhhccCchhhcCcc
Confidence 5666777777666666654333334456677777776666665433322211 466777777777765554111
Q ss_pred cCccccCCCCccEEEEcCCchhh----hh----ccCCcceeeecCCCCccccC--CCCCCC-------------------
Q 020667 101 SNLGILEFPSLKELWISGCPKFM----ER----YNRTTNILTERGCDHLVDLV--PSSTSF------------------- 151 (323)
Q Consensus 101 ~~~~~~~l~~L~~L~l~~cp~~~----~~----l~~L~~L~~i~~~~~l~~l~--~~~~~l------------------- 151 (323)
... ..++..++.+...+|...- .. ...+..+ ++..|..+++.. ..-.+.
T Consensus 235 ~~~-~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~l-nl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l 312 (483)
T KOG4341|consen 235 QAL-QRGCKELEKLSLKGCLELELEALLKAAAYCLEILKL-NLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVL 312 (483)
T ss_pred hHH-hccchhhhhhhhcccccccHHHHHHHhccChHhhcc-chhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHH
Confidence 110 1244556666555662110 00 0011111 122333332211 001123
Q ss_pred -------CCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccc
Q 020667 152 -------QNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLT 224 (323)
Q Consensus 152 -------~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~ 224 (323)
++|+.+.+..|+.+++........+.+.|+.+++.+|..+.+-. .... -.+++.|+.|.++.|..++
T Consensus 313 ~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~t-----L~sl-s~~C~~lr~lslshce~it 386 (483)
T KOG4341|consen 313 WALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGT-----LASL-SRNCPRLRVLSLSHCELIT 386 (483)
T ss_pred HHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhh-----Hhhh-ccCCchhccCChhhhhhhh
Confidence 44444444444444443222223344444554444444332210 0000 1468899999999998887
Q ss_pred eecCCC---ccccCCcccEEeecCCCCCc-ccCCCCCCCCCcceeEccCccccc
Q 020667 225 SFCSGN---CAFKFPSLERLVLDDCPSMK-IFSEGNSSTPKLHEVQWPGEARWA 274 (323)
Q Consensus 225 ~l~~~~---~~~~l~~L~~L~l~~c~~l~-~lp~~~~~~~~L~~L~l~~~~~~~ 274 (323)
+-.... ....+..|+.+.+.+||.+. ..-+.+..|++|+++++.++....
T Consensus 387 D~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 387 DEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred hhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence 752211 11346679999999999986 344456689999999998876543
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.05 E-value=8.8e-10 Score=108.21 Aligned_cols=110 Identities=15% Similarity=0.096 Sum_probs=48.9
Q ss_pred cccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccCc
Q 020667 24 NLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSNL 103 (323)
Q Consensus 24 ~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 103 (323)
+...|++++ .+++.+ |.. + .++|+.|+++++ .++ .++.. .+++|+.|+++++ .++.+|..
T Consensus 179 ~~~~L~L~~-~~LtsL-P~~-I--p~~L~~L~Ls~N-~Lt--sLP~~---------l~~nL~~L~Ls~N-~LtsLP~~-- 238 (754)
T PRK15370 179 NKTELRLKI-LGLTTI-PAC-I--PEQITTLILDNN-ELK--SLPEN---------LQGNIKTLYANSN-QLTSIPAT-- 238 (754)
T ss_pred CceEEEeCC-CCcCcC-Ccc-c--ccCCcEEEecCC-CCC--cCChh---------hccCCCEEECCCC-ccccCChh--
Confidence 445566655 345543 433 1 235666666554 333 11211 2235666666554 34444432
Q ss_pred cccCCCCccEEEEcCCc-----hhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecC
Q 020667 104 GILEFPSLKELWISGCP-----KFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCC 162 (323)
Q Consensus 104 ~~~~l~~L~~L~l~~cp-----~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c 162 (323)
..++|+.|++++|. ..+ ..+|+.| ++ +++.+..+|..+. ++|+.|++++|
T Consensus 239 ---l~~~L~~L~Ls~N~L~~LP~~l--~s~L~~L-~L-s~N~L~~LP~~l~--~sL~~L~Ls~N 293 (754)
T PRK15370 239 ---LPDTIQEMELSINRITELPERL--PSALQSL-DL-FHNKISCLPENLP--EELRYLSVYDN 293 (754)
T ss_pred ---hhccccEEECcCCccCcCChhH--hCCCCEE-EC-cCCccCccccccC--CCCcEEECCCC
Confidence 12355555555551 111 1233444 22 2334444544332 35666666655
No 14
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.02 E-value=3.7e-12 Score=112.47 Aligned_cols=232 Identities=19% Similarity=0.265 Sum_probs=158.4
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccC
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSN 102 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 102 (323)
..|+.|.+++|....+-.-..+..+++++++|.+.+|..+++-..-.-.. .+++|++|++..|+.+++.....
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~-------~C~~l~~l~L~~c~~iT~~~Lk~ 210 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLAR-------YCRKLRHLNLHSCSSITDVSLKY 210 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHH-------hcchhhhhhhcccchhHHHHHHH
Confidence 46899999999887654333345689999999999999776321111111 68999999999999888765443
Q ss_pred ccccCCCCccEEEEcCCchhhhh--------ccCCcceeeecCCCCcc--ccCCCCCCCCCCCEEEeecCcCcceecchh
Q 020667 103 LGILEFPSLKELWISGCPKFMER--------YNRTTNILTERGCDHLV--DLVPSSTSFQNLTNLVVSCCKGLKIVLTFS 172 (323)
Q Consensus 103 ~~~~~l~~L~~L~l~~cp~~~~~--------l~~L~~L~~i~~~~~l~--~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 172 (323)
. ...|++|+++++++||...++ +..+..+ ...+|..++ .+...-.+..-+..+++..|..+++.....
T Consensus 211 l-a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~-~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~ 288 (483)
T KOG4341|consen 211 L-AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKL-SLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWL 288 (483)
T ss_pred H-HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhh-hhcccccccHHHHHHHhccChHhhccchhhhccccchHHHH
Confidence 2 457999999999999876552 1111111 123443321 111112244456777778898888874444
Q ss_pred HHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCc--
Q 020667 173 IAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMK-- 250 (323)
Q Consensus 173 ~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~-- 250 (323)
....+..|+.|..++|..+++.+.. .-....++|+.|.+.+|.++++........+++.|+.+++.+|-...
T Consensus 289 i~~~c~~lq~l~~s~~t~~~d~~l~------aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~ 362 (483)
T KOG4341|consen 289 IACGCHALQVLCYSSCTDITDEVLW------ALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG 362 (483)
T ss_pred HhhhhhHhhhhcccCCCCCchHHHH------HHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh
Confidence 5567889999999999987775522 11246789999999999998887665555678899999999887654
Q ss_pred ccCCCCCCCCCcceeEccC
Q 020667 251 IFSEGNSSTPKLHEVQWPG 269 (323)
Q Consensus 251 ~lp~~~~~~~~L~~L~l~~ 269 (323)
.+-.-..+|+.|+.+.++.
T Consensus 363 tL~sls~~C~~lr~lslsh 381 (483)
T KOG4341|consen 363 TLASLSRNCPRLRVLSLSH 381 (483)
T ss_pred hHhhhccCCchhccCChhh
Confidence 2333334788999888843
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.01 E-value=3.6e-10 Score=110.92 Aligned_cols=154 Identities=14% Similarity=0.101 Sum_probs=92.2
Q ss_pred CCcCEEecccccccccccccCccccCCCCccEEEEcCCchh--hhh-ccCCcceeeecCCCCccccCCCCCCCCCCCEEE
Q 020667 82 PQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCPKF--MER-YNRTTNILTERGCDHLVDLVPSSTSFQNLTNLV 158 (323)
Q Consensus 82 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp~~--~~~-l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~ 158 (323)
.+|+.|+++++ ++..+|.. -+++|+.|++++|.-- -.. .+.+++| .+.+ +.+..+|..+ .++|+.|+
T Consensus 262 s~L~~L~Ls~N-~L~~LP~~-----l~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L-~Ls~-N~Lt~LP~~l--~~sL~~L~ 331 (754)
T PRK15370 262 SALQSLDLFHN-KISCLPEN-----LPEELRYLSVYDNSIRTLPAHLPSGITHL-NVQS-NSLTALPETL--PPGLKTLE 331 (754)
T ss_pred CCCCEEECcCC-ccCccccc-----cCCCCcEEECCCCccccCcccchhhHHHH-HhcC-CccccCCccc--cccceecc
Confidence 35777777654 55555543 2357777877776100 000 0123333 2333 2344555433 36788888
Q ss_pred eecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcc
Q 020667 159 VSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSL 238 (323)
Q Consensus 159 l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L 238 (323)
+++|. ++.+ +..+ .++|+.|++++|. +..+| .. ..++|+.|++.+| +++.+|... ..+|
T Consensus 332 Ls~N~-Lt~L--P~~l--~~sL~~L~Ls~N~-L~~LP--------~~--lp~~L~~LdLs~N-~Lt~LP~~l----~~sL 390 (754)
T PRK15370 332 AGENA-LTSL--PASL--PPELQVLDVSKNQ-ITVLP--------ET--LPPTITTLDVSRN-ALTNLPENL----PAAL 390 (754)
T ss_pred ccCCc-cccC--Chhh--cCcccEEECCCCC-CCcCC--------hh--hcCCcCEEECCCC-cCCCCCHhH----HHHH
Confidence 88874 5555 3322 2688888888875 55555 11 2468899999886 677776543 3478
Q ss_pred cEEeecCCCCCcccCCCCC----CCCCcceeEc
Q 020667 239 ERLVLDDCPSMKIFSEGNS----STPKLHEVQW 267 (323)
Q Consensus 239 ~~L~l~~c~~l~~lp~~~~----~~~~L~~L~l 267 (323)
+.|++++| .+..+|..+. ..+++..+++
T Consensus 391 ~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L 422 (754)
T PRK15370 391 QIMQASRN-NLVRLPESLPHFRGEGPQPTRIIV 422 (754)
T ss_pred HHHhhccC-CcccCchhHHHHhhcCCCccEEEe
Confidence 88888874 5667776543 3477888888
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.95 E-value=7.9e-11 Score=113.28 Aligned_cols=215 Identities=19% Similarity=0.213 Sum_probs=131.7
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccC
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSN 102 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 102 (323)
.+|++++++. +++.++ | ++++.+.+|+.++.....- . .++ ..+....+|+.|.+..| .+.-++...
T Consensus 241 ~nl~~~dis~-n~l~~l-p-~wi~~~~nle~l~~n~N~l-~--~lp-------~ri~~~~~L~~l~~~~n-el~yip~~l 306 (1081)
T KOG0618|consen 241 LNLQYLDISH-NNLSNL-P-EWIGACANLEALNANHNRL-V--ALP-------LRISRITSLVSLSAAYN-ELEYIPPFL 306 (1081)
T ss_pred ccceeeecch-hhhhcc-h-HHHHhcccceEecccchhH-H--hhH-------HHHhhhhhHHHHHhhhh-hhhhCCCcc
Confidence 5777777776 667764 6 4477888888887765432 2 111 22224556666666655 455555543
Q ss_pred ccccCCCCccEEEEcCC-----chhh-hh-------------------------ccCCcceeeecCCCCccccCCCCCCC
Q 020667 103 LGILEFPSLKELWISGC-----PKFM-ER-------------------------YNRTTNILTERGCDHLVDLVPSSTSF 151 (323)
Q Consensus 103 ~~~~~l~~L~~L~l~~c-----p~~~-~~-------------------------l~~L~~L~~i~~~~~l~~l~~~~~~l 151 (323)
. .+.+|+.|++..+ |..+ .. ++.|+.| .+.++..-.+..+-+.++
T Consensus 307 e---~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~L-ylanN~Ltd~c~p~l~~~ 382 (1081)
T KOG0618|consen 307 E---GLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQEL-YLANNHLTDSCFPVLVNF 382 (1081)
T ss_pred c---ccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHH-HHhcCcccccchhhhccc
Confidence 2 5667777776655 2110 00 0111111 122232223333457788
Q ss_pred CCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCc
Q 020667 152 QNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNC 231 (323)
Q Consensus 152 ~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~ 231 (323)
.+|+.|+++++. ++.++ .+.+.+++.|++|+++++. ++.++ ..+..++.|++|...+ ..+..+|.
T Consensus 383 ~hLKVLhLsyNr-L~~fp-as~~~kle~LeeL~LSGNk-L~~Lp--------~tva~~~~L~tL~ahs-N~l~~fPe--- 447 (1081)
T KOG0618|consen 383 KHLKVLHLSYNR-LNSFP-ASKLRKLEELEELNLSGNK-LTTLP--------DTVANLGRLHTLRAHS-NQLLSFPE--- 447 (1081)
T ss_pred cceeeeeecccc-cccCC-HHHHhchHHhHHHhcccch-hhhhh--------HHHHhhhhhHHHhhcC-Cceeechh---
Confidence 889999998874 55542 4567788889999998865 77777 4446788888888776 46777773
Q ss_pred cccCCcccEEeecCCCCCc--ccCCCCCCCCCcceeEccCccc
Q 020667 232 AFKFPSLERLVLDDCPSMK--IFSEGNSSTPKLHEVQWPGEAR 272 (323)
Q Consensus 232 ~~~l~~L~~L~l~~c~~l~--~lp~~~~~~~~L~~L~l~~~~~ 272 (323)
...++.|+.+++ .|+.+. .+|... .-++||+|++.|...
T Consensus 448 ~~~l~qL~~lDl-S~N~L~~~~l~~~~-p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 448 LAQLPQLKVLDL-SCNNLSEVTLPEAL-PSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhcCcceEEec-ccchhhhhhhhhhC-CCcccceeeccCCcc
Confidence 257889999999 557776 345433 227999999966443
No 17
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.86 E-value=5e-09 Score=104.56 Aligned_cols=219 Identities=19% Similarity=0.255 Sum_probs=128.0
Q ss_pred ccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccccc
Q 020667 18 MSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTS 97 (323)
Q Consensus 18 ~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 97 (323)
+. .++.|+.|++++|..+.. +|.+ ++.+-+||+|++++.. ++ . .|..+.+|..|.+|++.....+..
T Consensus 567 f~-~m~~LrVLDLs~~~~l~~-LP~~-I~~Li~LryL~L~~t~-I~--~-------LP~~l~~Lk~L~~Lnl~~~~~l~~ 633 (889)
T KOG4658|consen 567 FR-SLPLLRVLDLSGNSSLSK-LPSS-IGELVHLRYLDLSDTG-IS--H-------LPSGLGNLKKLIYLNLEVTGRLES 633 (889)
T ss_pred Hh-hCcceEEEECCCCCccCc-CChH-HhhhhhhhcccccCCC-cc--c-------cchHHHHHHhhheecccccccccc
Confidence 44 688888888888777766 4766 7888888888888653 33 2 233444788888888887766666
Q ss_pred ccccCccccCCCCccEEEEcCCc-----hhhhhccCCcceee--------------------------ec-CCCCccccC
Q 020667 98 FCTSNLGILEFPSLKELWISGCP-----KFMERYNRTTNILT--------------------------ER-GCDHLVDLV 145 (323)
Q Consensus 98 ~~~~~~~~~~l~~L~~L~l~~cp-----~~~~~l~~L~~L~~--------------------------i~-~~~~l~~l~ 145 (323)
++... ..+++|++|.+..-- ..++.+..|++|.. +. .+......+
T Consensus 634 ~~~i~---~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~ 710 (889)
T KOG4658|consen 634 IPGIL---LELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLI 710 (889)
T ss_pred ccchh---hhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceee
Confidence 64432 257888888776541 11222223333321 01 112233444
Q ss_pred CCCCCCCCCCEEEeecCcCcceec---------------------------chhHHhccccccEEEEccCcccceeeecc
Q 020667 146 PSSTSFQNLTNLVVSCCKGLKIVL---------------------------TFSIAKTLVRLEYMEIESCDRITEIVLVD 198 (323)
Q Consensus 146 ~~~~~l~~L~~L~l~~c~~l~~l~---------------------------~~~~l~~l~~L~~L~l~~c~~l~~i~~~~ 198 (323)
.++..+.+|+.|.|.+|....... .+.+....++|+.|++..|..++++....
T Consensus 711 ~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~ 790 (889)
T KOG4658|consen 711 SSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKL 790 (889)
T ss_pred cccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHH
Confidence 566778888888888887542110 00112234677788888887777766433
Q ss_pred Cccccc--ccccccccCee-ecccccccceecCCCccccCCcccEEeecCCCCCcccCC
Q 020667 199 DVAAKD--EVITFRELKEL-KLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSE 254 (323)
Q Consensus 199 ~~~~~~--~~~~~~~L~~L-~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 254 (323)
+..... ....+.+++.+ .+.+.+.+..+.... ..++.|+.+.+..||+++.+|.
T Consensus 791 k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~--l~~~~l~~~~ve~~p~l~~~P~ 847 (889)
T KOG4658|consen 791 KALLELKELILPFNKLEGLRMLCSLGGLPQLYWLP--LSFLKLEELIVEECPKLGKLPL 847 (889)
T ss_pred HHhhhcccEEecccccccceeeecCCCCceeEecc--cCccchhheehhcCcccccCcc
Confidence 222211 12445555555 355555555544322 2345577888888888777765
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.86 E-value=3.3e-10 Score=101.40 Aligned_cols=234 Identities=15% Similarity=0.033 Sum_probs=125.9
Q ss_pred cCCcccEEeeeccccccee----ccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYL----FSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFT 96 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~----~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 96 (323)
.+++|++|++++|. ++.. ++.. +...++|++|+++++..-. ........+..+..+++|++|+++++....
T Consensus 21 ~l~~L~~l~l~~~~-l~~~~~~~i~~~-l~~~~~l~~l~l~~~~~~~---~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 21 KLLCLQVLRLEGNT-LGEEAAKALASA-LRPQPSLKELCLSLNETGR---IPRGLQSLLQGLTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HHhhccEEeecCCC-CcHHHHHHHHHH-HhhCCCceEEeccccccCC---cchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence 67779999999854 4221 1222 4567789999988764221 011111122233367899999999886433
Q ss_pred cccccCcc-ccCCCCccEEEEcCCchh----------hhhc-cCCcceeeecCCCCcc----ccCCCCCCCCCCCEEEee
Q 020667 97 SFCTSNLG-ILEFPSLKELWISGCPKF----------MERY-NRTTNILTERGCDHLV----DLVPSSTSFQNLTNLVVS 160 (323)
Q Consensus 97 ~~~~~~~~-~~~l~~L~~L~l~~cp~~----------~~~l-~~L~~L~~i~~~~~l~----~l~~~~~~l~~L~~L~l~ 160 (323)
..+..... ... ++|++|++++|.-. +..+ ++++.| ++.+|.... .++..+..+++|++|+++
T Consensus 96 ~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L-~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~ 173 (319)
T cd00116 96 DGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKL-VLGRNRLEGASCEALAKALRANRDLKELNLA 173 (319)
T ss_pred hHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEE-EcCCCcCCchHHHHHHHHHHhCCCcCEEECc
Confidence 22222110 112 55999999988321 1223 455555 455555331 222234455678888888
Q ss_pred cCcCcceecc---hhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccc----
Q 020667 161 CCKGLKIVLT---FSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAF---- 233 (323)
Q Consensus 161 ~c~~l~~l~~---~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~---- 233 (323)
+|. ++.-.. ...+..+++|++|++++|. +...... .....+..+++|++|++++| .+++........
T Consensus 174 ~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~---~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~ 247 (319)
T cd00116 174 NNG-IGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGAS---ALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLS 247 (319)
T ss_pred CCC-CchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHH---HHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhc
Confidence 775 332111 1223445688888888875 2211100 00012245678888888886 344321111001
Q ss_pred cCCcccEEeecCCCCC----cccCCCCCCCCCcceeEc
Q 020667 234 KFPSLERLVLDDCPSM----KIFSEGNSSTPKLHEVQW 267 (323)
Q Consensus 234 ~l~~L~~L~l~~c~~l----~~lp~~~~~~~~L~~L~l 267 (323)
..+.|++|++.+|... ..+...+..+++|+++++
T Consensus 248 ~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l 285 (319)
T cd00116 248 PNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDL 285 (319)
T ss_pred cCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEEC
Confidence 2368888888887532 123333334578888888
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.85 E-value=1.7e-10 Score=90.63 Aligned_cols=165 Identities=16% Similarity=0.222 Sum_probs=114.2
Q ss_pred cccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccc
Q 020667 17 VMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFT 96 (323)
Q Consensus 17 ~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 96 (323)
++. .+.+.+.|.++. ++++.+.|. +..+.+|+.|++++. .++ +.|.++..+++|+.|++. +..+.
T Consensus 28 gLf-~~s~ITrLtLSH-NKl~~vppn--ia~l~nlevln~~nn-qie---------~lp~~issl~klr~lnvg-mnrl~ 92 (264)
T KOG0617|consen 28 GLF-NMSNITRLTLSH-NKLTVVPPN--IAELKNLEVLNLSNN-QIE---------ELPTSISSLPKLRILNVG-MNRLN 92 (264)
T ss_pred ccc-chhhhhhhhccc-CceeecCCc--HHHhhhhhhhhcccc-hhh---------hcChhhhhchhhhheecc-hhhhh
Confidence 355 688889999998 889887554 789999999999865 344 345566689999999987 56777
Q ss_pred cccccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhc
Q 020667 97 SFCTSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKT 176 (323)
Q Consensus 97 ~~~~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~ 176 (323)
..|.+ ++.+|-|+.|++.++. | .-..+|..+..++.|+-|+++++. .+.+ |...++
T Consensus 93 ~lprg---fgs~p~levldltynn-----------l-------~e~~lpgnff~m~tlralyl~dnd-fe~l--p~dvg~ 148 (264)
T KOG0617|consen 93 ILPRG---FGSFPALEVLDLTYNN-----------L-------NENSLPGNFFYMTTLRALYLGDND-FEIL--PPDVGK 148 (264)
T ss_pred cCccc---cCCCchhhhhhccccc-----------c-------ccccCCcchhHHHHHHHHHhcCCC-cccC--Chhhhh
Confidence 78877 4599999999998751 1 112344445556666667776653 4444 445677
Q ss_pred cccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCC
Q 020667 177 LVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGN 230 (323)
Q Consensus 177 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~ 230 (323)
+++|+.|.+.++. +-++| .+++.+..|++|+|.+ ..++.+|.+.
T Consensus 149 lt~lqil~lrdnd-ll~lp--------keig~lt~lrelhiqg-nrl~vlppel 192 (264)
T KOG0617|consen 149 LTNLQILSLRDND-LLSLP--------KEIGDLTRLRELHIQG-NRLTVLPPEL 192 (264)
T ss_pred hcceeEEeeccCc-hhhCc--------HHHHHHHHHHHHhccc-ceeeecChhh
Confidence 7777777777654 34455 4456777777777777 4677776543
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.84 E-value=2.2e-08 Score=98.23 Aligned_cols=87 Identities=21% Similarity=0.107 Sum_probs=47.6
Q ss_pred CCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCcc
Q 020667 153 NLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCA 232 (323)
Q Consensus 153 ~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~ 232 (323)
+|+.|++++|. ++.++ . ..++|+.|+++++ .+..+| ...++|+.|+++++ .++.+|..
T Consensus 343 ~Lq~LdLS~N~-Ls~LP--~---lp~~L~~L~Ls~N-~L~~LP-----------~l~~~L~~LdLs~N-~Lt~LP~l--- 400 (788)
T PRK15387 343 GLQELSVSDNQ-LASLP--T---LPSELYKLWAYNN-RLTSLP-----------ALPSGLKELIVSGN-RLTSLPVL--- 400 (788)
T ss_pred ccceEecCCCc-cCCCC--C---CCcccceehhhcc-ccccCc-----------ccccccceEEecCC-cccCCCCc---
Confidence 56666665542 44332 1 1234555555543 244444 12346777777764 56655531
Q ss_pred ccCCcccEEeecCCCCCcccCCCCCCCCCcceeEc
Q 020667 233 FKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQW 267 (323)
Q Consensus 233 ~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l 267 (323)
.++|+.|+++++ .+..+|. .+.+|+.|++
T Consensus 401 --~s~L~~LdLS~N-~LssIP~---l~~~L~~L~L 429 (788)
T PRK15387 401 --PSELKELMVSGN-RLTSLPM---LPSGLLSLSV 429 (788)
T ss_pred --ccCCCEEEccCC-cCCCCCc---chhhhhhhhh
Confidence 356777888774 4666775 2346777777
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.82 E-value=9.5e-11 Score=92.04 Aligned_cols=104 Identities=15% Similarity=0.071 Sum_probs=63.1
Q ss_pred CccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeeccc
Q 020667 140 HLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLN 219 (323)
Q Consensus 140 ~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~ 219 (323)
.+..+|..++.|+-|+.|+++.++.-+. ..|..+..++.|+.|+++++. .+-+| .+++.+.+|+.|.+.+
T Consensus 90 rl~~lprgfgs~p~levldltynnl~e~-~lpgnff~m~tlralyl~dnd-fe~lp--------~dvg~lt~lqil~lrd 159 (264)
T KOG0617|consen 90 RLNILPRGFGSFPALEVLDLTYNNLNEN-SLPGNFFYMTTLRALYLGDND-FEILP--------PDVGKLTNLQILSLRD 159 (264)
T ss_pred hhhcCccccCCCchhhhhhccccccccc-cCCcchhHHHHHHHHHhcCCC-cccCC--------hhhhhhcceeEEeecc
Confidence 3445566677777777777776542222 224444555667777776654 44455 4446777777777776
Q ss_pred ccccceecCCCccccCCcccEEeecCCCCCcccCCCCC
Q 020667 220 LESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNS 257 (323)
Q Consensus 220 c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~ 257 (323)
..+-++|.+. +.++.|++|+|.+ +.++.+|..+.
T Consensus 160 -ndll~lpkei--g~lt~lrelhiqg-nrl~vlppel~ 193 (264)
T KOG0617|consen 160 -NDLLSLPKEI--GDLTRLRELHIQG-NRLTVLPPELA 193 (264)
T ss_pred -CchhhCcHHH--HHHHHHHHHhccc-ceeeecChhhh
Confidence 3566666554 5677777777755 56666766543
No 22
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.1e-09 Score=97.50 Aligned_cols=208 Identities=16% Similarity=0.184 Sum_probs=118.2
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCT 100 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 100 (323)
++..|+...|.+| .+......+....|++++.||+|..- +..|. ....-...||+|+.|+++.+ ++.....
T Consensus 119 n~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL-~~nw~------~v~~i~eqLp~Le~LNls~N-rl~~~~~ 189 (505)
T KOG3207|consen 119 NLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNL-FHNWF------PVLKIAEQLPSLENLNLSSN-RLSNFIS 189 (505)
T ss_pred hHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhh-HHhHH------HHHHHHHhcccchhcccccc-cccCCcc
Confidence 6888999999885 45543222346789999999998641 11111 01111127899999999876 4544444
Q ss_pred cCccccCCCCccEEEEcCCc-------hhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhH
Q 020667 101 SNLGILEFPSLKELWISGCP-------KFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSI 173 (323)
Q Consensus 101 ~~~~~~~l~~L~~L~l~~cp-------~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 173 (323)
+.. ...+++|+.|.++.|- ..+..+++++.| .+.++..+.....+...+..|+.|+|++++.+.. .....
T Consensus 190 s~~-~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L-~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~-~~~~~ 266 (505)
T KOG3207|consen 190 SNT-TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVL-YLEANEIILIKATSTKILQTLQELDLSNNNLIDF-DQGYK 266 (505)
T ss_pred ccc-hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHh-hhhcccccceecchhhhhhHHhhccccCCccccc-ccccc
Confidence 433 3467889999999992 122235666655 3444432221112233456788888887764433 22234
Q ss_pred HhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEee
Q 020667 174 AKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVL 243 (323)
Q Consensus 174 l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l 243 (323)
.+.||.|..|.++.|. +.++...+.+ ..+....+++|++|.+... ++.+++.-.+...+++|+.|.+
T Consensus 267 ~~~l~~L~~Lnls~tg-i~si~~~d~~-s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 267 VGTLPGLNQLNLSSTG-IASIAEPDVE-SLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred cccccchhhhhccccC-cchhcCCCcc-chhhhcccccceeeecccC-ccccccccchhhccchhhhhhc
Confidence 5677788888777664 3333211111 1122256788888887773 4444443334445666666665
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.72 E-value=2.3e-09 Score=95.91 Aligned_cols=231 Identities=15% Similarity=0.037 Sum_probs=129.8
Q ss_pred ccccCCcccEEeeecccccce------eccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccc
Q 020667 18 MSCGIQNLMHLTLRSCMNLRY------LFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFN 91 (323)
Q Consensus 18 ~~~~l~~L~~L~L~~c~~l~~------~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 91 (323)
+. ..++|++|+++++ .+.+ .++. .+..+++|+.|++++|..-. .....+..... . ++|++|++++
T Consensus 47 l~-~~~~l~~l~l~~~-~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~---~-~~L~~L~ls~ 117 (319)
T cd00116 47 LR-PQPSLKELCLSLN-ETGRIPRGLQSLLQ-GLTKGCGLQELDLSDNALGP--DGCGVLESLLR---S-SSLQELKLNN 117 (319)
T ss_pred Hh-hCCCceEEecccc-ccCCcchHHHHHHH-HHHhcCceeEEEccCCCCCh--hHHHHHHHHhc---c-CcccEEEeeC
Confidence 44 6778999999874 3332 1112 25568899999999886543 11111111111 2 4599999988
Q ss_pred cccccc-----ccccCccccCC-CCccEEEEcCCch-------h---hhhccCCcceeeecCCCCcc----ccCCCCCCC
Q 020667 92 LENFTS-----FCTSNLGILEF-PSLKELWISGCPK-------F---MERYNRTTNILTERGCDHLV----DLVPSSTSF 151 (323)
Q Consensus 92 ~~~l~~-----~~~~~~~~~~l-~~L~~L~l~~cp~-------~---~~~l~~L~~L~~i~~~~~l~----~l~~~~~~l 151 (323)
|. +.. +... ...+ ++|++|++++|.- . +..+.+++.| ++.+|...+ .++..+..+
T Consensus 118 ~~-~~~~~~~~l~~~---l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L-~l~~n~l~~~~~~~l~~~l~~~ 192 (319)
T cd00116 118 NG-LGDRGLRLLAKG---LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKEL-NLANNGIGDAGIRALAEGLKAN 192 (319)
T ss_pred Cc-cchHHHHHHHHH---HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEE-ECcCCCCchHHHHHHHHHHHhC
Confidence 74 331 1111 1245 8899999999831 1 1223456666 455554331 233334456
Q ss_pred CCCCEEEeecCcCcceec---chhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecC
Q 020667 152 QNLTNLVVSCCKGLKIVL---TFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCS 228 (323)
Q Consensus 152 ~~L~~L~l~~c~~l~~l~---~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~ 228 (323)
++|++|++++|. +++.. ....+..+++|++|++++|. +.+..... .........+.|+.|++.+| .++....
T Consensus 193 ~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~--l~~~~~~~~~~L~~L~l~~n-~i~~~~~ 267 (319)
T cd00116 193 CNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAA--LASALLSPNISLLTLSLSCN-DITDDGA 267 (319)
T ss_pred CCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHH--HHHHHhccCCCceEEEccCC-CCCcHHH
Confidence 799999999985 33221 12345668899999999986 33211000 00000012479999999997 4542111
Q ss_pred ---CCccccCCcccEEeecCCCCCcc----cCCCCCCC-CCcceeEc
Q 020667 229 ---GNCAFKFPSLERLVLDDCPSMKI----FSEGNSST-PKLHEVQW 267 (323)
Q Consensus 229 ---~~~~~~l~~L~~L~l~~c~~l~~----lp~~~~~~-~~L~~L~l 267 (323)
......+++|++++++++..-.. +...+... +.|+++++
T Consensus 268 ~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~ 314 (319)
T cd00116 268 KDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWV 314 (319)
T ss_pred HHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhccc
Confidence 01123468999999988664422 33222222 57777777
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.62 E-value=7.5e-09 Score=100.01 Aligned_cols=124 Identities=15% Similarity=0.193 Sum_probs=79.9
Q ss_pred CCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCcc
Q 020667 153 NLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCA 232 (323)
Q Consensus 153 ~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~ 232 (323)
.|+.|++.++. +++-. ...+.++..|+.|+++++. +..+|+ ..+..++.|++|+++| .+|+.++...
T Consensus 360 ~Lq~LylanN~-Ltd~c-~p~l~~~~hLKVLhLsyNr-L~~fpa-------s~~~kle~LeeL~LSG-NkL~~Lp~tv-- 426 (1081)
T KOG0618|consen 360 ALQELYLANNH-LTDSC-FPVLVNFKHLKVLHLSYNR-LNSFPA-------SKLRKLEELEELNLSG-NKLTTLPDTV-- 426 (1081)
T ss_pred HHHHHHHhcCc-ccccc-hhhhccccceeeeeecccc-cccCCH-------HHHhchHHhHHHhccc-chhhhhhHHH--
Confidence 35555555553 33322 2235667778888887753 666662 2345677788888888 5788887543
Q ss_pred ccCCcccEEeecCCCCCcccCCCCCCCCCcceeEccC--ccccccccchh-hhceeeeccce
Q 020667 233 FKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQWPG--EARWAWKDDLN-TTIQKVIFPAM 291 (323)
Q Consensus 233 ~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~--~~~~~~~~~l~-~~l~~l~~~~~ 291 (323)
..++.|++|...+ +.+..+| .+..++.|+.++++- -.+....-..| +.++++.+.|-
T Consensus 427 a~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 427 ANLGRLHTLRAHS-NQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGN 486 (1081)
T ss_pred HhhhhhHHHhhcC-Cceeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCC
Confidence 6788888888855 6778889 566899999999921 12223344556 67777777663
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.59 E-value=4.4e-08 Score=97.95 Aligned_cols=213 Identities=17% Similarity=0.154 Sum_probs=122.4
Q ss_pred cCCcccEEeeeccc-ccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccccccc
Q 020667 21 GIQNLMHLTLRSCM-NLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFC 99 (323)
Q Consensus 21 ~l~~L~~L~L~~c~-~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 99 (323)
..++|++|-+.+.. .+.. ++..++..++.|++||+++|..+. .+| ..++.+-+|++|++++. .+..+|
T Consensus 543 ~~~~L~tLll~~n~~~l~~-is~~ff~~m~~LrVLDLs~~~~l~--~LP-------~~I~~Li~LryL~L~~t-~I~~LP 611 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLE-ISGEFFRSLPLLRVLDLSGNSSLS--KLP-------SSIGELVHLRYLDLSDT-GISHLP 611 (889)
T ss_pred CCCccceEEEeecchhhhh-cCHHHHhhCcceEEEECCCCCccC--cCC-------hHHhhhhhhhcccccCC-Cccccc
Confidence 46688888887732 1444 355557889999999999987776 334 44448999999999876 677888
Q ss_pred ccCccccCCCCccEEEEcCC------chhhhhccCCcceeeecCCCCc-cccCCCCCCCCCCCEEEeecCcC--------
Q 020667 100 TSNLGILEFPSLKELWISGC------PKFMERYNRTTNILTERGCDHL-VDLVPSSTSFQNLTNLVVSCCKG-------- 164 (323)
Q Consensus 100 ~~~~~~~~l~~L~~L~l~~c------p~~~~~l~~L~~L~~i~~~~~l-~~l~~~~~~l~~L~~L~l~~c~~-------- 164 (323)
.+.. ++..|.+|++... |.....+.+|++|.--...... ......+.++.+|+.+.+..+..
T Consensus 612 ~~l~---~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~ 688 (889)
T KOG4658|consen 612 SGLG---NLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLG 688 (889)
T ss_pred hHHH---HHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhh
Confidence 8754 8889999998865 3344447777777321111111 11112234455555554443322
Q ss_pred ---------------cceecchhHHhccccccEEEEccCcccceeeeccCcccccccc-cccccCeeecccccccceecC
Q 020667 165 ---------------LKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVI-TFRELKELKLLNLESLTSFCS 228 (323)
Q Consensus 165 ---------------l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~-~~~~L~~L~l~~c~~L~~l~~ 228 (323)
.......+.+..+.+|+.|.|.+|...+......+ ..... .|+++..+.+.+|..++.+..
T Consensus 689 ~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~---~~~~~~~f~~l~~~~~~~~~~~r~l~~ 765 (889)
T KOG4658|consen 689 MTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEE---SLIVLLCFPNLSKVSILNCHMLRDLTW 765 (889)
T ss_pred hHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhccccc---ccchhhhHHHHHHHHhhccccccccch
Confidence 00001123355667788888887775432220000 00011 255566666666655554432
Q ss_pred CCccccCCcccEEeecCCCCCcccC
Q 020667 229 GNCAFKFPSLERLVLDDCPSMKIFS 253 (323)
Q Consensus 229 ~~~~~~l~~L~~L~l~~c~~l~~lp 253 (323)
..-.|+|+.|.+..|+.+..+.
T Consensus 766 ---~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 766 ---LLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred ---hhccCcccEEEEecccccccCC
Confidence 1235677777777777666443
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.58 E-value=1.1e-08 Score=90.28 Aligned_cols=256 Identities=16% Similarity=0.161 Sum_probs=134.6
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccC
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSN 102 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 102 (323)
+.-+.++|.. ++++.+ |+..|+.+++|+.||||++ +++.+ -++.+ ..+++|..|.+.+..+++.++...
T Consensus 67 ~~tveirLdq-N~I~~i-P~~aF~~l~~LRrLdLS~N-~Is~I-~p~AF-------~GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 67 PETVEIRLDQ-NQISSI-PPGAFKTLHRLRRLDLSKN-NISFI-APDAF-------KGLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred CcceEEEecc-CCcccC-Chhhccchhhhceeccccc-chhhc-ChHhh-------hhhHhhhHHHhhcCCchhhhhhhH
Confidence 3456788887 888875 7677899999999999975 34422 12222 257788888888877888887765
Q ss_pred ccccCCCCccEEEEcCC------chhhhhccCCcce---------------------e--e------ecCCCCc------
Q 020667 103 LGILEFPSLKELWISGC------PKFMERYNRTTNI---------------------L--T------ERGCDHL------ 141 (323)
Q Consensus 103 ~~~~~l~~L~~L~l~~c------p~~~~~l~~L~~L---------------------~--~------i~~~~~l------ 141 (323)
. .++.+|+.|.+.-| +..+..++++.-| + + +..|+.-
T Consensus 136 F--~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~ 213 (498)
T KOG4237|consen 136 F--GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDL 213 (498)
T ss_pred h--hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHH
Confidence 3 45555555554432 1222222222111 0 0 1111110
Q ss_pred cccCCCCCCC----------------------CCCCEE---EeecCcCcceecchhHHhccccccEEEEccCcccceeee
Q 020667 142 VDLVPSSTSF----------------------QNLTNL---VVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVL 196 (323)
Q Consensus 142 ~~l~~~~~~l----------------------~~L~~L---~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~ 196 (323)
...|...+.+ .+++.+ --+.|. .....+...++.|++|+.|+++++. ++.|.
T Consensus 214 a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~-~d~~cP~~cf~~L~~L~~lnlsnN~-i~~i~- 290 (498)
T KOG4237|consen 214 AMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDF-PDSICPAKCFKKLPNLRKLNLSNNK-ITRIE- 290 (498)
T ss_pred hhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccC-cCCcChHHHHhhcccceEeccCCCc-cchhh-
Confidence 0000000000 001111 011121 1111222346678888888887654 55443
Q ss_pred ccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcc-cCCCCCCCCCcceeEccCccc---
Q 020667 197 VDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKI-FSEGNSSTPKLHEVQWPGEAR--- 272 (323)
Q Consensus 197 ~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~-lp~~~~~~~~L~~L~l~~~~~--- 272 (323)
...+....++++|.+.. .++..+.... +..+..|+.|+++++ .++. -|.......+|.+|.+-+...
T Consensus 291 ------~~aFe~~a~l~eL~L~~-N~l~~v~~~~-f~~ls~L~tL~L~~N-~it~~~~~aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 291 ------DGAFEGAAELQELYLTR-NKLEFVSSGM-FQGLSGLKTLSLYDN-QITTVAPGAFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred ------hhhhcchhhhhhhhcCc-chHHHHHHHh-hhccccceeeeecCC-eeEEEecccccccceeeeeehccCcccCc
Confidence 12233556777777776 4666665443 456778888888874 4553 455555667788887732110
Q ss_pred --ccc----------cc----chhhhceeeeccceeeeeeecCCCccc
Q 020667 273 --WAW----------KD----DLNTTIQKVIFPAMVAGVWSDDGGLEE 304 (323)
Q Consensus 273 --~~~----------~~----~l~~~l~~l~~~~~~~~~~~~~~~~e~ 304 (323)
..| .| .-|..++.+.+++.+++-...+ +-||
T Consensus 362 C~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~-~~ee 408 (498)
T KOG4237|consen 362 CRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCG-GPEE 408 (498)
T ss_pred cchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccC-Cccc
Confidence 011 01 2244566777777777665333 4444
No 27
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=5.8e-09 Score=88.89 Aligned_cols=189 Identities=19% Similarity=0.142 Sum_probs=110.3
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccC
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSN 102 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 102 (323)
+.|++|+|++ ..++.---..++..|++|+.|.+.+..--. . +...+.+-.+|+.|+++.|..++......
T Consensus 185 sRlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~~LdD------~---I~~~iAkN~~L~~lnlsm~sG~t~n~~~l 254 (419)
T KOG2120|consen 185 SRLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGLRLDD------P---IVNTIAKNSNLVRLNLSMCSGFTENALQL 254 (419)
T ss_pred hhhHHhhcch-hheeHHHHHHHHHHHHhhhhccccccccCc------H---HHHHHhccccceeeccccccccchhHHHH
Confidence 3589999998 566543233456788999998887653221 1 11122255789999999998887765444
Q ss_pred ccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCc-ceecchhHHhcccccc
Q 020667 103 LGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGL-KIVLTFSIAKTLVRLE 181 (323)
Q Consensus 103 ~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l-~~l~~~~~l~~l~~L~ 181 (323)
. ...|+.|.+|++++|--.... .+.+...+ -.+|+.|++++|..- ..-........+|+|.
T Consensus 255 l-~~scs~L~~LNlsWc~l~~~~---------------Vtv~V~hi--se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~ 316 (419)
T KOG2120|consen 255 L-LSSCSRLDELNLSWCFLFTEK---------------VTVAVAHI--SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLV 316 (419)
T ss_pred H-HHhhhhHhhcCchHhhccchh---------------hhHHHhhh--chhhhhhhhhhhHhhhhhhHHHHHHHhCCcee
Confidence 3 457899999999999321111 00000001 135666777666422 1111122345677777
Q ss_pred EEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCC
Q 020667 182 YMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCP 247 (323)
Q Consensus 182 ~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~ 247 (323)
+|++++|..+..-. ...+..|+.|++|.++.|..+..--. ......|+|.+|++.+|-
T Consensus 317 ~LDLSD~v~l~~~~-------~~~~~kf~~L~~lSlsRCY~i~p~~~-~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 317 HLDLSDSVMLKNDC-------FQEFFKFNYLQHLSLSRCYDIIPETL-LELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeccccccccCchH-------HHHHHhcchheeeehhhhcCCChHHe-eeeccCcceEEEEecccc
Confidence 77777776665421 12335677777777777765421100 022456788888887764
No 28
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=3.1e-09 Score=90.55 Aligned_cols=186 Identities=22% Similarity=0.208 Sum_probs=116.5
Q ss_pred CCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccCccccCCCCccEEEEcCCchhhhhccC
Q 020667 49 VRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCPKFMERYNR 128 (323)
Q Consensus 49 ~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp~~~~~l~~ 128 (323)
+.||+||+|.- .++ ...-.+ -+..|.+|+.|.+.+..--..+... ++.-.+|+.|+++.|..+..+ .
T Consensus 185 sRlq~lDLS~s-~it---~stl~~----iLs~C~kLk~lSlEg~~LdD~I~~~---iAkN~~L~~lnlsm~sG~t~n--~ 251 (419)
T KOG2120|consen 185 SRLQHLDLSNS-VIT---VSTLHG----ILSQCSKLKNLSLEGLRLDDPIVNT---IAKNSNLVRLNLSMCSGFTEN--A 251 (419)
T ss_pred hhhHHhhcchh-hee---HHHHHH----HHHHHHhhhhccccccccCcHHHHH---Hhccccceeeccccccccchh--H
Confidence 45999999853 222 111111 1226778888888876422223322 346678999999998655442 0
Q ss_pred CcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCccccccccc
Q 020667 129 TTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVIT 208 (323)
Q Consensus 129 L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~ 208 (323)
++- -+.+++.|..|+++.|...++.......+--++|..|++++|..--.... ...-...
T Consensus 252 ~~l---------------l~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh-----~~tL~~r 311 (419)
T KOG2120|consen 252 LQL---------------LLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSH-----LSTLVRR 311 (419)
T ss_pred HHH---------------HHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhH-----HHHHHHh
Confidence 111 13467788899999997666542222233356899999999864322110 0011246
Q ss_pred ccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCC---CCCCCCcceeEccCc
Q 020667 209 FRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEG---NSSTPKLHEVQWPGE 270 (323)
Q Consensus 209 ~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~---~~~~~~L~~L~l~~~ 270 (323)
+|.|.+|++++|..++.= ....+..|+.|++|.++.|-.+ .|.. +...|+|.+|++.|+
T Consensus 312 cp~l~~LDLSD~v~l~~~-~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVMLKND-CFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred CCceeeeccccccccCch-HHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 899999999999887762 2223467899999999999877 3332 346689999999775
No 29
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.38 E-value=1.3e-06 Score=79.37 Aligned_cols=150 Identities=21% Similarity=0.321 Sum_probs=75.2
Q ss_pred CCCCccEEEEcCCchhhhhcc----CCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccE
Q 020667 107 EFPSLKELWISGCPKFMERYN----RTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEY 182 (323)
Q Consensus 107 ~l~~L~~L~l~~cp~~~~~l~----~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~ 182 (323)
.+++++.|++++|. +..++ +++.| .+.+|..+..+|..+ .++|++|++++|..+..+ | ++|+.
T Consensus 50 ~~~~l~~L~Is~c~--L~sLP~LP~sLtsL-~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL--P------~sLe~ 116 (426)
T PRK15386 50 EARASGRLYIKDCD--IESLPVLPNELTEI-TIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL--P------ESVRS 116 (426)
T ss_pred HhcCCCEEEeCCCC--CcccCCCCCCCcEE-EccCCCCcccCCchh--hhhhhheEccCccccccc--c------cccce
Confidence 46788889888881 11111 23444 355566655555432 235666666666544433 1 13455
Q ss_pred EEEcc--CcccceeeeccCcccccccccccccCeeecccccccceecCCCccccC-CcccEEeecCCCCCcccCCCCCCC
Q 020667 183 MEIES--CDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKF-PSLERLVLDDCPSMKIFSEGNSST 259 (323)
Q Consensus 183 L~l~~--c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l-~~L~~L~l~~c~~l~~lp~~~~~~ 259 (323)
|++.. |..+..+ .++|+.|.+.+.......... ..+ ++|++|.+.+|..+. +|..+ +
T Consensus 117 L~L~~n~~~~L~~L--------------PssLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i~-LP~~L--P 176 (426)
T PRK15386 117 LEIKGSATDSIKNV--------------PNGLTSLSINSYNPENQARID---NLISPSLKTLSLTGCSNII-LPEKL--P 176 (426)
T ss_pred EEeCCCCCcccccC--------------cchHhheeccccccccccccc---cccCCcccEEEecCCCccc-Ccccc--c
Confidence 55432 1122222 245666666442211111100 124 479999999888653 55433 4
Q ss_pred CCcceeEccCc--ccccc-ccchhhhceeeeccc
Q 020667 260 PKLHEVQWPGE--ARWAW-KDDLNTTIQKVIFPA 290 (323)
Q Consensus 260 ~~L~~L~l~~~--~~~~~-~~~l~~~l~~l~~~~ 290 (323)
.+|+.|++..+ ..+.. ...+|+.+ .+.+.+
T Consensus 177 ~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n 209 (426)
T PRK15386 177 ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQN 209 (426)
T ss_pred ccCcEEEecccccccccCccccccccc-Eechhh
Confidence 68888888332 12222 23455555 444443
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.27 E-value=6.1e-07 Score=72.57 Aligned_cols=130 Identities=17% Similarity=0.229 Sum_probs=41.2
Q ss_pred cCCcccEEeeecccccceeccchhHh-cCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVS-SFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFC 99 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~-~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 99 (323)
+..++++|+|.+ +.++.+ .. ++ .+.+|+.|+++++. ++.+ . .+..++.|+.|+++++ .++.+.
T Consensus 17 n~~~~~~L~L~~-n~I~~I-e~--L~~~l~~L~~L~Ls~N~-I~~l--~--------~l~~L~~L~~L~L~~N-~I~~i~ 80 (175)
T PF14580_consen 17 NPVKLRELNLRG-NQISTI-EN--LGATLDKLEVLDLSNNQ-ITKL--E--------GLPGLPRLKTLDLSNN-RISSIS 80 (175)
T ss_dssp ---------------------S----TT-TT--EEE-TTS---S----T--------T----TT--EEE--SS----S-C
T ss_pred cccccccccccc-cccccc-cc--hhhhhcCCCEEECCCCC-Cccc--c--------CccChhhhhhcccCCC-CCCccc
Confidence 566789999998 667754 33 44 57889999999774 3311 1 1226788888888876 455554
Q ss_pred ccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCccee-cchhHHhccc
Q 020667 100 TSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIV-LTFSIAKTLV 178 (323)
Q Consensus 100 ~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~l~~l~ 178 (323)
... ...+|+|++|+++++. |.....+ ..+..+++|+.|++.+++-...- .....+..+|
T Consensus 81 ~~l--~~~lp~L~~L~L~~N~--------------I~~l~~l----~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP 140 (175)
T PF14580_consen 81 EGL--DKNLPNLQELYLSNNK--------------ISDLNEL----EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLP 140 (175)
T ss_dssp HHH--HHH-TT--EEE-TTS-----------------SCCCC----GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-T
T ss_pred cch--HHhCCcCCEEECcCCc--------------CCChHHh----HHHHcCCCcceeeccCCcccchhhHHHHHHHHcC
Confidence 321 1247888888887751 1111111 22445677888888776532211 1123456677
Q ss_pred cccEEEEc
Q 020667 179 RLEYMEIE 186 (323)
Q Consensus 179 ~L~~L~l~ 186 (323)
+|+.|+-.
T Consensus 141 ~Lk~LD~~ 148 (175)
T PF14580_consen 141 SLKVLDGQ 148 (175)
T ss_dssp T-SEETTE
T ss_pred hhheeCCE
Confidence 77776543
No 31
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.20 E-value=6.7e-06 Score=74.74 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=18.0
Q ss_pred ccccEEEEccCcccceeeeccCcccccccccccccCeeecccc
Q 020667 178 VRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNL 220 (323)
Q Consensus 178 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c 220 (323)
++|+.|.+++|..+. +| . ....+|+.|.+..+
T Consensus 156 sSLk~L~Is~c~~i~-LP--------~--~LP~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNII-LP--------E--KLPESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCccc-Cc--------c--cccccCcEEEeccc
Confidence 467777777776442 22 0 12346777777653
No 32
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.05 E-value=3.4e-07 Score=81.08 Aligned_cols=213 Identities=15% Similarity=0.175 Sum_probs=130.6
Q ss_pred cccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeecc-ccc-----------------cCC
Q 020667 15 VTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDN-QEE-----------------RKN 76 (323)
Q Consensus 15 p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~-~~~-----------------~~~ 76 (323)
|..|+ .+++|+.|+|+. ++++.+.|.. +..+++|..|.+.+...+++ ++.. ++. ...
T Consensus 84 ~~aF~-~l~~LRrLdLS~-N~Is~I~p~A-F~GL~~l~~Lvlyg~NkI~~--l~k~~F~gL~slqrLllNan~i~Cir~~ 158 (498)
T KOG4237|consen 84 PGAFK-TLHRLRRLDLSK-NNISFIAPDA-FKGLASLLSLVLYGNNKITD--LPKGAFGGLSSLQRLLLNANHINCIRQD 158 (498)
T ss_pred hhhcc-chhhhceecccc-cchhhcChHh-hhhhHhhhHHHhhcCCchhh--hhhhHhhhHHHHHHHhcChhhhcchhHH
Confidence 44566 999999999999 8999887765 77888898888888777773 3322 120 011
Q ss_pred CccccCCcCEEecccccccccccccCccccCCCCccEEEEcCCchh--------h----------hhc--c---------
Q 020667 77 NNVMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCPKF--------M----------ERY--N--------- 127 (323)
Q Consensus 77 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp~~--------~----------~~l--~--------- 127 (323)
.+..+++|..|.+.++ .+..++... +..+.+++.+++..+|.. . +.+ .
T Consensus 159 al~dL~~l~lLslyDn-~~q~i~~~t--f~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~R 235 (498)
T KOG4237|consen 159 ALRDLPSLSLLSLYDN-KIQSICKGT--FQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKR 235 (498)
T ss_pred HHHHhhhcchhcccch-hhhhhcccc--ccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHH
Confidence 1224555555565554 344444432 235666777776655411 0 000 0
Q ss_pred -----------CCcceee--ecCCCCccccCC-CCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccce
Q 020667 128 -----------RTTNILT--ERGCDHLVDLVP-SSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITE 193 (323)
Q Consensus 128 -----------~L~~L~~--i~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~ 193 (323)
.++.+.. ...|.-...-|. -+..+++|+.|+++++. ++.+- ..++.++..+++|++..+. ++.
T Consensus 236 i~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~-i~~i~-~~aFe~~a~l~eL~L~~N~-l~~ 312 (498)
T KOG4237|consen 236 INQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK-ITRIE-DGAFEGAAELQELYLTRNK-LEF 312 (498)
T ss_pred hcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc-cchhh-hhhhcchhhhhhhhcCcch-HHH
Confidence 0000000 011101111111 14578999999999875 66553 4567888999999998864 555
Q ss_pred eeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCC
Q 020667 194 IVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCP 247 (323)
Q Consensus 194 i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~ 247 (323)
+. ...+..+..|+.|++++ .+++.+.... +..+.+|.+|.+-.+|
T Consensus 313 v~-------~~~f~~ls~L~tL~L~~-N~it~~~~~a-F~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 313 VS-------SGMFQGLSGLKTLSLYD-NQITTVAPGA-FQTLFSLSTLNLLSNP 357 (498)
T ss_pred HH-------HHhhhccccceeeeecC-CeeEEEeccc-ccccceeeeeehccCc
Confidence 54 23446788999999999 5888886654 5667788888886655
No 33
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.03 E-value=2.9e-07 Score=87.06 Aligned_cols=140 Identities=19% Similarity=0.238 Sum_probs=74.0
Q ss_pred cCCcccEEeeecccccce--eccchhHhcCCCccEEEEecC-CCCceEEeeccccccCCCccccCCcCEEeccccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRY--LFSSSIVSSFVRLQRIEIVEC-PVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTS 97 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~--~~p~~~~~~l~~L~~L~ls~c-~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 97 (323)
.+++|+.|.+.+|..++. +.+. ...+++|+.|++++| .... ..+.. .......+++|+.|+++.+..+.+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~--~~~~~---~~~~~~~~~~L~~l~l~~~~~isd 258 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDAL--ALKCPNLEELDLSGCCLLIT--LSPLL---LLLLLSICRKLKSLDLSGCGLVTD 258 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHH--HhhCchhheecccCcccccc--cchhH---hhhhhhhcCCcCccchhhhhccCc
Confidence 467888888888777765 2222 457788888888774 2222 10100 001122567777788777765544
Q ss_pred ccccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhcc
Q 020667 98 FCTSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTL 177 (323)
Q Consensus 98 ~~~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l 177 (323)
...... ...+++|+.|.+.+|+...+. .+-.....+++|++|+++.|..+++........++
T Consensus 259 ~~l~~l-~~~c~~L~~L~l~~c~~lt~~-----------------gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c 320 (482)
T KOG1947|consen 259 IGLSAL-ASRCPNLETLSLSNCSNLTDE-----------------GLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNC 320 (482)
T ss_pred hhHHHH-HhhCCCcceEccCCCCccchh-----------------HHHHHHHhcCcccEEeeecCccchHHHHHHHHHhC
Confidence 433322 224777888877777542111 00011234455666666666665443333334445
Q ss_pred ccccEEEE
Q 020667 178 VRLEYMEI 185 (323)
Q Consensus 178 ~~L~~L~l 185 (323)
++|+.|.+
T Consensus 321 ~~l~~l~~ 328 (482)
T KOG1947|consen 321 PNLRELKL 328 (482)
T ss_pred cchhhhhh
Confidence 55555443
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.02 E-value=1e-05 Score=53.54 Aligned_cols=59 Identities=22% Similarity=0.320 Sum_probs=40.2
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccc
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNL 92 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 92 (323)
|+|++|++++ ++++.+ |...+..+++|++|+++++ .++ .++.. .+..+++|++|+++++
T Consensus 1 p~L~~L~l~~-n~l~~i-~~~~f~~l~~L~~L~l~~N-~l~--~i~~~------~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSN-NKLTEI-PPDSFSNLPNLETLDLSNN-NLT--SIPPD------AFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETS-STESEE-CTTTTTTGTTESEEEETSS-SES--EEETT------TTTTSTTESEEEETSS
T ss_pred CcCcEEECCC-CCCCcc-CHHHHcCCCCCCEeEccCC-ccC--ccCHH------HHcCCCCCCEEeCcCC
Confidence 5788888888 478876 5555788888888888855 344 22221 1226778888887776
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=4.6e-06 Score=74.89 Aligned_cols=64 Identities=17% Similarity=0.203 Sum_probs=33.6
Q ss_pred cCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccCccccCCCCccEEEEcCC
Q 020667 47 SFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGC 119 (323)
Q Consensus 47 ~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 119 (323)
++.+|+...+.+|+- . ..+.+ .-+..|++++.|+++.+ -+..|.....-+..+|+|+.|.++.+
T Consensus 119 n~kkL~~IsLdn~~V-~--~~~~~-----~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~N 182 (505)
T KOG3207|consen 119 NLKKLREISLDNYRV-E--DAGIE-----EYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSN 182 (505)
T ss_pred hHHhhhheeecCccc-c--ccchh-----hhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccc
Confidence 566666666666532 1 11100 12236777777777765 23333221111236777777777765
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.98 E-value=2.2e-05 Score=51.96 Aligned_cols=36 Identities=31% Similarity=0.363 Sum_probs=14.3
Q ss_pred cccccCeeecccccccceecCCCccccCCcccEEeecC
Q 020667 208 TFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDD 245 (323)
Q Consensus 208 ~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~ 245 (323)
.+++|++|+++++ +++.++... +..+++|++|++++
T Consensus 23 ~l~~L~~L~l~~N-~l~~i~~~~-f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 23 NLPNLETLDLSNN-NLTSIPPDA-FSNLPNLRYLDLSN 58 (61)
T ss_dssp TGTTESEEEETSS-SESEEETTT-TTTSTTESEEEETS
T ss_pred CCCCCCEeEccCC-ccCccCHHH-HcCCCCCCEEeCcC
Confidence 3444444444432 344443322 23344444444444
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.87 E-value=3.3e-06 Score=72.50 Aligned_cols=39 Identities=26% Similarity=0.318 Sum_probs=20.0
Q ss_pred cccccCeeecccccccceecCCCccccCCcccEEeecCCC
Q 020667 208 TFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCP 247 (323)
Q Consensus 208 ~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~ 247 (323)
.+=+|..|++.+ .++..+..-..++++|.|+.+.+.++|
T Consensus 372 KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 372 KLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCC
Confidence 344555555555 244444333344556666666665544
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.83 E-value=4.4e-05 Score=61.82 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=8.9
Q ss_pred CCCCCCEEEeecCcCcceecchhHHhccccccEEEEcc
Q 020667 150 SFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIES 187 (323)
Q Consensus 150 ~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~ 187 (323)
.+++|++|+++++. ++++. ......+|+|++|++++
T Consensus 62 ~L~~L~~L~L~~N~-I~~i~-~~l~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 62 GLPRLKTLDLSNNR-ISSIS-EGLDKNLPNLQELYLSN 97 (175)
T ss_dssp --TT--EEE--SS----S-C-HHHHHH-TT--EEE-TT
T ss_pred ChhhhhhcccCCCC-CCccc-cchHHhCCcCCEEECcC
Confidence 34455555555442 33331 01112345555555544
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.76 E-value=2.6e-05 Score=72.07 Aligned_cols=92 Identities=21% Similarity=0.254 Sum_probs=42.3
Q ss_pred cccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeeccccc
Q 020667 142 VDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLE 221 (323)
Q Consensus 142 ~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~ 221 (323)
..+|..+.....|+++.++++..... +..+..+.++..+.+.++. +..++ ..+..+++++.|++.++
T Consensus 199 ~~l~~~~~~~~~L~~l~~~~N~~~~~---~~~~~~~~~l~~l~l~~n~-~~~~~--------~~~~~l~~l~~L~~s~n- 265 (394)
T COG4886 199 SDLPPEIELLSALEELDLSNNSIIEL---LSSLSNLKNLSGLELSNNK-LEDLP--------ESIGNLSNLETLDLSNN- 265 (394)
T ss_pred ccCchhhhhhhhhhhhhhcCCcceec---chhhhhcccccccccCCce-eeecc--------chhccccccceeccccc-
Confidence 33433333334466666655532222 2234455555555543332 22211 12234555666666663
Q ss_pred ccceecCCCccccCCcccEEeecCCCCC
Q 020667 222 SLTSFCSGNCAFKFPSLERLVLDDCPSM 249 (323)
Q Consensus 222 ~L~~l~~~~~~~~l~~L~~L~l~~c~~l 249 (323)
.+.+++. ...+.+++.|++++....
T Consensus 266 ~i~~i~~---~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 266 QISSISS---LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ccccccc---ccccCccCEEeccCcccc
Confidence 4555543 234556666666554433
No 40
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.75 E-value=2.4e-06 Score=80.73 Aligned_cols=93 Identities=24% Similarity=0.384 Sum_probs=63.3
Q ss_pred cCCcccEEeeecc-cccceecc---chhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccc
Q 020667 21 GIQNLMHLTLRSC-MNLRYLFS---SSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFT 96 (323)
Q Consensus 21 ~l~~L~~L~L~~c-~~l~~~~p---~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 96 (323)
.+++|++|++++| ...... + ..+...+++|+.|+++.|..+.+..+..... .+++|+.|.+.+|..++
T Consensus 212 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~-------~c~~L~~L~l~~c~~lt 283 (482)
T KOG1947|consen 212 KCPNLEELDLSGCCLLITLS-PLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS-------RCPNLETLSLSNCSNLT 283 (482)
T ss_pred hCchhheecccCcccccccc-hhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh-------hCCCcceEccCCCCccc
Confidence 6899999999983 333321 2 2234568999999999998765322221111 48899999999898654
Q ss_pred cccccCccccCCCCccEEEEcCCchh
Q 020667 97 SFCTSNLGILEFPSLKELWISGCPKF 122 (323)
Q Consensus 97 ~~~~~~~~~~~l~~L~~L~l~~cp~~ 122 (323)
+...... ...+++|++|++++|...
T Consensus 284 ~~gl~~i-~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 284 DEGLVSI-AERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhHHHHH-HHhcCcccEEeeecCccc
Confidence 4333222 347899999999999654
No 41
>PLN03150 hypothetical protein; Provisional
Probab=97.52 E-value=0.00012 Score=71.57 Aligned_cols=82 Identities=20% Similarity=0.129 Sum_probs=61.3
Q ss_pred cccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccCc
Q 020667 24 NLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSNL 103 (323)
Q Consensus 24 ~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 103 (323)
.++.|+|++ +++++.+|.. ++.+++|+.|+|+++.... ..+..+..+++|+.|+++++.-.+.+|...
T Consensus 419 ~v~~L~L~~-n~L~g~ip~~-i~~L~~L~~L~Ls~N~l~g---------~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l- 486 (623)
T PLN03150 419 FIDGLGLDN-QGLRGFIPND-ISKLRHLQSINLSGNSIRG---------NIPPSLGSITSLEVLDLSYNSFNGSIPESL- 486 (623)
T ss_pred EEEEEECCC-CCccccCCHH-HhCCCCCCEEECCCCcccC---------cCChHHhCCCCCCEEECCCCCCCCCCchHH-
Confidence 378889988 6788777776 7889999999998874332 233344588899999999885545566653
Q ss_pred cccCCCCccEEEEcCC
Q 020667 104 GILEFPSLKELWISGC 119 (323)
Q Consensus 104 ~~~~l~~L~~L~l~~c 119 (323)
..+++|+.|++++|
T Consensus 487 --~~L~~L~~L~Ls~N 500 (623)
T PLN03150 487 --GQLTSLRILNLNGN 500 (623)
T ss_pred --hcCCCCCEEECcCC
Confidence 47889999999887
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.47 E-value=0.0003 Score=65.00 Aligned_cols=112 Identities=24% Similarity=0.283 Sum_probs=73.0
Q ss_pred ccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccc
Q 020667 141 LVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNL 220 (323)
Q Consensus 141 l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c 220 (323)
+.++|...+..++|+.|+++++. +..+ +........|++|.++++..+..+. .+..+.++..+.+.+
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~N~-i~~l--~~~~~~~~~L~~l~~~~N~~~~~~~---------~~~~~~~l~~l~l~~- 241 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSGNK-ISDL--PPEIELLSALEELDLSNNSIIELLS---------SLSNLKNLSGLELSN- 241 (394)
T ss_pred hhhhhhhhhhhhhhhheeccCCc-cccC--chhhhhhhhhhhhhhcCCcceecch---------hhhhcccccccccCC-
Confidence 33444444467889999998874 6666 3333445568899888875333322 224566677776554
Q ss_pred cccceecCCCccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEccC
Q 020667 221 ESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQWPG 269 (323)
Q Consensus 221 ~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~ 269 (323)
..+..++. ....++++++|++++ +.+..++. +....+++.+++.+
T Consensus 242 n~~~~~~~--~~~~l~~l~~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~ 286 (394)
T COG4886 242 NKLEDLPE--SIGNLSNLETLDLSN-NQISSISS-LGSLTNLRELDLSG 286 (394)
T ss_pred ceeeeccc--hhccccccceecccc-cccccccc-ccccCccCEEeccC
Confidence 34444322 235688899999966 67777877 66888999999954
No 43
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.44 E-value=4.5e-06 Score=77.33 Aligned_cols=170 Identities=13% Similarity=0.096 Sum_probs=112.7
Q ss_pred CccccCCcCEEecccccccccccccCccccCCCCccEEEEcCCc-----hhhhhccCCcceeeecCCCCccccCCCCCCC
Q 020667 77 NNVMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCP-----KFMERYNRTTNILTERGCDHLVDLVPSSTSF 151 (323)
Q Consensus 77 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp-----~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l 151 (323)
....|..|+.+.++.+ .+..++... ..+..|..|+++.+. ..+..+ .|+-| |..+++++.+|+.++..
T Consensus 93 ~~~~f~~Le~liLy~n-~~r~ip~~i---~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvl--i~sNNkl~~lp~~ig~~ 165 (722)
T KOG0532|consen 93 EACAFVSLESLILYHN-CIRTIPEAI---CNLEALTFLDLSSNQLSHLPDGLCDL-PLKVL--IVSNNKLTSLPEEIGLL 165 (722)
T ss_pred HHHHHHHHHHHHHHhc-cceecchhh---hhhhHHHHhhhccchhhcCChhhhcC-cceeE--EEecCccccCCcccccc
Confidence 3336667777777654 455566553 367777777777662 222211 23333 66778888999989988
Q ss_pred CCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCc
Q 020667 152 QNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNC 231 (323)
Q Consensus 152 ~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~ 231 (323)
..|..|+.+.|. +..+ ++.++++.+|+.|.+..+. +..+| .++.. =.|..|+++. .++..+|..
T Consensus 166 ~tl~~ld~s~ne-i~sl--psql~~l~slr~l~vrRn~-l~~lp--------~El~~-LpLi~lDfSc-Nkis~iPv~-- 229 (722)
T KOG0532|consen 166 PTLAHLDVSKNE-IQSL--PSQLGYLTSLRDLNVRRNH-LEDLP--------EELCS-LPLIRLDFSC-NKISYLPVD-- 229 (722)
T ss_pred hhHHHhhhhhhh-hhhc--hHHhhhHHHHHHHHHhhhh-hhhCC--------HHHhC-Cceeeeeccc-Cceeecchh--
Confidence 899999998874 5555 6778899999999988754 66666 23232 3567788875 689999875
Q ss_pred cccCCcccEEeecCCCCCcccCCCCCCC---CCcceeEccCc
Q 020667 232 AFKFPSLERLVLDDCPSMKIFSEGNSST---PKLHEVQWPGE 270 (323)
Q Consensus 232 ~~~l~~L~~L~l~~c~~l~~lp~~~~~~---~~L~~L~l~~~ 270 (323)
+.++..|++|.+.+ +-+++=|..++.- --.|+|++..|
T Consensus 230 fr~m~~Lq~l~Len-NPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 230 FRKMRHLQVLQLEN-NPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhhheeeeecc-CCCCCChHHHHhccceeeeeeecchhc
Confidence 47899999999965 5566666544322 22355555443
No 44
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.42 E-value=3.2e-05 Score=75.85 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=17.5
Q ss_pred CCCCCCCEEEeecCcCcceecchhHHhccccccEEEEcc
Q 020667 149 TSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIES 187 (323)
Q Consensus 149 ~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~ 187 (323)
.+|++|..|||++++ ++++ .+++.|.+|+.|.+.+
T Consensus 170 ~sFpNL~sLDIS~Tn-I~nl---~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTN-ISNL---SGISRLKNLQVLSMRN 204 (699)
T ss_pred hccCccceeecCCCC-ccCc---HHHhccccHHHHhccC
Confidence 345555566665553 3333 3445555555555444
No 45
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.37 E-value=7.2e-05 Score=73.40 Aligned_cols=38 Identities=29% Similarity=0.333 Sum_probs=21.0
Q ss_pred ccCCcCEEecccccccccccccCccccCCCCccEEEEcCC
Q 020667 80 MFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGC 119 (323)
Q Consensus 80 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 119 (323)
.||+|+.|.+.+-.-........ ..+||+|..|+|+++
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~l--c~sFpNL~sLDIS~T 183 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQL--CASFPNLRSLDISGT 183 (699)
T ss_pred hCcccceEEecCceecchhHHHH--hhccCccceeecCCC
Confidence 57777777776543222211111 135777777777775
No 46
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.36 E-value=1.9e-05 Score=67.96 Aligned_cols=59 Identities=20% Similarity=0.270 Sum_probs=28.9
Q ss_pred CCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccc
Q 020667 151 FQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNL 220 (323)
Q Consensus 151 l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c 220 (323)
+-++++|.++.+. ++++ ++++.+=+|..|++.++. ++++. ....++.+|.|+.+.+.+.
T Consensus 351 LGNIKtL~La~N~-iE~L---SGL~KLYSLvnLDl~~N~-Ie~ld------eV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 351 LGNIKTLKLAQNK-IETL---SGLRKLYSLVNLDLSSNQ-IEELD------EVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred hcCEeeeehhhhh-Hhhh---hhhHhhhhheeccccccc-hhhHH------HhcccccccHHHHHhhcCC
Confidence 3455555555542 3332 345555556666665543 33322 0123456666666666553
No 47
>PLN03150 hypothetical protein; Provisional
Probab=97.31 E-value=0.00042 Score=67.87 Aligned_cols=102 Identities=13% Similarity=0.031 Sum_probs=64.4
Q ss_pred CCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccc-eecCCCcc
Q 020667 154 LTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLT-SFCSGNCA 232 (323)
Q Consensus 154 L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~-~l~~~~~~ 232 (323)
++.|+++++..-..+ +..+..+++|+.|++++|...+.+| ..++.+++|+.|+++++ ++. .+|.. .
T Consensus 420 v~~L~L~~n~L~g~i--p~~i~~L~~L~~L~Ls~N~l~g~iP--------~~~~~l~~L~~LdLs~N-~lsg~iP~~--l 486 (623)
T PLN03150 420 IDGLGLDNQGLRGFI--PNDISKLRHLQSINLSGNSIRGNIP--------PSLGSITSLEVLDLSYN-SFNGSIPES--L 486 (623)
T ss_pred EEEEECCCCCccccC--CHHHhCCCCCCEEECCCCcccCcCC--------hHHhCCCCCCEEECCCC-CCCCCCchH--H
Confidence 666777766533333 4456777788888887776555555 34467777888888775 444 34432 3
Q ss_pred ccCCcccEEeecCCCCCcccCCCCCCC-CCcceeEcc
Q 020667 233 FKFPSLERLVLDDCPSMKIFSEGNSST-PKLHEVQWP 268 (323)
Q Consensus 233 ~~l~~L~~L~l~~c~~l~~lp~~~~~~-~~L~~L~l~ 268 (323)
..+++|+.|++++|...+.+|..+... .++..+++.
T Consensus 487 ~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~ 523 (623)
T PLN03150 487 GQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFT 523 (623)
T ss_pred hcCCCCCEEECcCCcccccCChHHhhccccCceEEec
Confidence 567778888887776666777665432 345566663
No 48
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.27 E-value=3.8e-05 Score=71.40 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=17.2
Q ss_pred ccCCcCEEecccccccccccccCccccCCCCccEEEEcCC
Q 020667 80 MFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGC 119 (323)
Q Consensus 80 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 119 (323)
..+.|..|+.+.| .+..++.... .+.+|+.|.++.+
T Consensus 164 ~~~tl~~ld~s~n-ei~slpsql~---~l~slr~l~vrRn 199 (722)
T KOG0532|consen 164 LLPTLAHLDVSKN-EIQSLPSQLG---YLTSLRDLNVRRN 199 (722)
T ss_pred cchhHHHhhhhhh-hhhhchHHhh---hHHHHHHHHHhhh
Confidence 4455555555544 3444444432 4555555555443
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.08 E-value=0.00055 Score=41.82 Aligned_cols=37 Identities=22% Similarity=0.413 Sum_probs=28.5
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCc
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLK 63 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~ 63 (323)
++|++|++++ ++++.+ |+. ++++++|+.|++++++ ++
T Consensus 1 ~~L~~L~l~~-N~i~~l-~~~-l~~l~~L~~L~l~~N~-i~ 37 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDL-PPE-LSNLPNLETLNLSNNP-IS 37 (44)
T ss_dssp TT-SEEEETS-SS-SSH-GGH-GTTCTTSSEEEETSSC-CS
T ss_pred CcceEEEccC-CCCccc-Cch-HhCCCCCCEEEecCCC-CC
Confidence 5799999998 788886 554 7899999999999884 44
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.53 E-value=0.004 Score=37.98 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=26.4
Q ss_pred CCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceee
Q 020667 152 QNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIV 195 (323)
Q Consensus 152 ~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~ 195 (323)
++|++|+++++. ++++ +..++++++|+.|++++|. +.+++
T Consensus 1 ~~L~~L~l~~N~-i~~l--~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDL--PPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSSS--SSH--GGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCCC-Cccc--CchHhCCCCCCEEEecCCC-CCCCc
Confidence 467888888774 6665 3447788888888888874 55554
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.39 E-value=0.00019 Score=68.83 Aligned_cols=104 Identities=18% Similarity=0.145 Sum_probs=54.1
Q ss_pred CccccCCcCEEecccccccccccccCccccCCCCccEEEEcCC-----chhhhhccCCcceeeecCCCCccccCCCCCCC
Q 020667 77 NNVMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGC-----PKFMERYNRTTNILTERGCDHLVDLVPSSTSF 151 (323)
Q Consensus 77 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c-----p~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l 151 (323)
++.-++.|+.|+++.+ ++..... ...++.|+.|+|+++ |.+-..=.+|..| +-.++.++++ ..+.++
T Consensus 182 SLqll~ale~LnLshN-k~~~v~~----Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L--~lrnN~l~tL-~gie~L 253 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHN-KFTKVDN----LRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLL--NLRNNALTTL-RGIENL 253 (1096)
T ss_pred HHHHHHHhhhhccchh-hhhhhHH----HHhcccccccccccchhccccccchhhhhheee--eecccHHHhh-hhHHhh
Confidence 3446788889999887 4554442 236888888888865 1110000012222 1122233333 234566
Q ss_pred CCCCEEEeecCcCcceecchhHHhccccccEEEEccCc
Q 020667 152 QNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCD 189 (323)
Q Consensus 152 ~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~ 189 (323)
.+|+.|+++.+-... -.....+..|..|..|++.+++
T Consensus 254 ksL~~LDlsyNll~~-hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSE-HSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhhccchhHhhhhc-chhhhHHHHHHHHHHHhhcCCc
Confidence 667777776553222 1222345556666677766654
No 52
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.90 E-value=0.00089 Score=54.58 Aligned_cols=65 Identities=14% Similarity=0.254 Sum_probs=32.9
Q ss_pred hcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccCccccCCCCccEEEEcCC
Q 020667 46 SSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGC 119 (323)
Q Consensus 46 ~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 119 (323)
..++.++.|.+.+|..+.++-+..-.+ ..++|+.|+|++|+.+++....- ...+++|+.|.|.+-
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~-------~~~~L~~L~lsgC~rIT~~GL~~--L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGG-------LAPSLQDLDLSGCPRITDGGLAC--LLKLKNLRRLHLYDL 186 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcc-------cccchheeeccCCCeechhHHHH--HHHhhhhHHHHhcCc
Confidence 455555555566665554332222112 35566666666666655432221 124566666666554
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.82 E-value=0.02 Score=46.95 Aligned_cols=88 Identities=17% Similarity=0.207 Sum_probs=45.2
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccc-c
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSF-C 99 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~ 99 (323)
.++.|.+|.+.+ +.++.+-|. +...+++|+.|.+.++. +.++ .+-. .+..||.|++|.+-+++--..- +
T Consensus 62 ~l~rL~tLll~n-NrIt~I~p~-L~~~~p~l~~L~LtnNs-i~~l--~dl~-----pLa~~p~L~~Ltll~Npv~~k~~Y 131 (233)
T KOG1644|consen 62 HLPRLHTLLLNN-NRITRIDPD-LDTFLPNLKTLILTNNS-IQEL--GDLD-----PLASCPKLEYLTLLGNPVEHKKNY 131 (233)
T ss_pred CccccceEEecC-Ccceeeccc-hhhhccccceEEecCcc-hhhh--hhcc-----hhccCCccceeeecCCchhcccCc
Confidence 566777777766 667765443 23456667777776543 2211 1111 1225667777776665421100 0
Q ss_pred ccCccccCCCCccEEEEcCC
Q 020667 100 TSNLGILEFPSLKELWISGC 119 (323)
Q Consensus 100 ~~~~~~~~l~~L~~L~l~~c 119 (323)
... ....+|+|+.|++.+-
T Consensus 132 R~y-vl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 132 RLY-VLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeE-EEEecCcceEeehhhh
Confidence 010 1235677777776654
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.80 E-value=0.0043 Score=53.72 Aligned_cols=70 Identities=16% Similarity=0.152 Sum_probs=36.7
Q ss_pred ccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccC
Q 020667 176 TLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFS 253 (323)
Q Consensus 176 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp 253 (323)
-+|++..+-+..|+ +++...+ ...-.+|.+..|.++. .++.+...-.....+|.|.-|.+.+.|....+.
T Consensus 197 ~Fpnv~sv~v~e~P-lK~~s~e------k~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGP-LKTESSE------KGSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred hcccchheeeecCc-ccchhhc------ccCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 46677777777766 2222211 1113455666666654 233333221223457777777777777665443
No 55
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.69 E-value=0.00063 Score=58.19 Aligned_cols=102 Identities=24% Similarity=0.314 Sum_probs=71.7
Q ss_pred CCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCC
Q 020667 151 FQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGN 230 (323)
Q Consensus 151 l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~ 230 (323)
+.+.+.|++.+|. +.++ +.....+.|+.|.++-+. +..+. .+..+.+|++|+|.. ..+.++.+-.
T Consensus 18 l~~vkKLNcwg~~-L~DI---sic~kMp~lEVLsLSvNk-IssL~---------pl~rCtrLkElYLRk-N~I~sldEL~ 82 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDI---SICEKMPLLEVLSLSVNK-ISSLA---------PLQRCTRLKELYLRK-NCIESLDELE 82 (388)
T ss_pred HHHhhhhcccCCC-ccHH---HHHHhcccceeEEeeccc-cccch---------hHHHHHHHHHHHHHh-cccccHHHHH
Confidence 4567788888884 6665 457788999999998654 44442 235788999998877 3566655434
Q ss_pred ccccCCcccEEeecCCCCCcccCCC-----CCCCCCcceeEc
Q 020667 231 CAFKFPSLERLVLDDCPSMKIFSEG-----NSSTPKLHEVQW 267 (323)
Q Consensus 231 ~~~~l~~L~~L~l~~c~~l~~lp~~-----~~~~~~L~~L~l 267 (323)
...++|+|+.|.|..+|-.+.-+.. +..+|+|++|+=
T Consensus 83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 4567899999999988876654443 346788888864
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.33 E-value=0.0019 Score=62.26 Aligned_cols=114 Identities=20% Similarity=0.139 Sum_probs=71.0
Q ss_pred CCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeec
Q 020667 138 CDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKL 217 (323)
Q Consensus 138 ~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l 217 (323)
|+.+..+..++.-++.|+.|++++++ +++. ..+..++.|++|+|+++. +..+|... . .. .+|+.|.|
T Consensus 173 yN~L~~mD~SLqll~ale~LnLshNk-~~~v---~~Lr~l~~LkhLDlsyN~-L~~vp~l~------~-~g-c~L~~L~l 239 (1096)
T KOG1859|consen 173 YNRLVLMDESLQLLPALESLNLSHNK-FTKV---DNLRRLPKLKHLDLSYNC-LRHVPQLS------M-VG-CKLQLLNL 239 (1096)
T ss_pred hhhHHhHHHHHHHHHHhhhhccchhh-hhhh---HHHHhcccccccccccch-hccccccc------h-hh-hhheeeee
Confidence 44445555566667889999999885 4433 467888999999998754 66665211 0 12 24888888
Q ss_pred ccccccceecCCCccccCCcccEEeecCCCCCc--ccCCCCCCCCCcceeEccC
Q 020667 218 LNLESLTSFCSGNCAFKFPSLERLVLDDCPSMK--IFSEGNSSTPKLHEVQWPG 269 (323)
Q Consensus 218 ~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~--~lp~~~~~~~~L~~L~l~~ 269 (323)
.| ..++.+- .+.++.+|+.|+++++-..+ .+-. +..+..|+.|++.|
T Consensus 240 rn-N~l~tL~---gie~LksL~~LDlsyNll~~hseL~p-LwsLs~L~~L~LeG 288 (1096)
T KOG1859|consen 240 RN-NALTTLR---GIENLKSLYGLDLSYNLLSEHSELEP-LWSLSSLIVLWLEG 288 (1096)
T ss_pred cc-cHHHhhh---hHHhhhhhhccchhHhhhhcchhhhH-HHHHHHHHHHhhcC
Confidence 87 3555542 23567888888887743222 1111 22456777777766
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.22 E-value=0.01 Score=50.41 Aligned_cols=112 Identities=21% Similarity=0.244 Sum_probs=63.4
Q ss_pred hcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccc--cccccccccCccccCCCCccEEEEcCCchhh
Q 020667 46 SSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNL--ENFTSFCTSNLGILEFPSLKELWISGCPKFM 123 (323)
Q Consensus 46 ~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~--~~l~~~~~~~~~~~~l~~L~~L~l~~cp~~~ 123 (323)
..+..|+.|.+.++..... .....+|+|++|.++++ .-..++.... ..+|+|++|.++++..
T Consensus 40 d~~~~le~ls~~n~gltt~-----------~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~---e~~P~l~~l~ls~Nki-- 103 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL-----------TNFPKLPKLKKLELSDNYRRVSGGLEVLA---EKAPNLKVLNLSGNKI-- 103 (260)
T ss_pred ccccchhhhhhhccceeec-----------ccCCCcchhhhhcccCCcccccccceehh---hhCCceeEEeecCCcc--
Confidence 3566677776665543321 11226788888888876 2233333332 2568888888887621
Q ss_pred hhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceec--chhHHhccccccEEEEccCcc
Q 020667 124 ERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVL--TFSIAKTLVRLEYMEIESCDR 190 (323)
Q Consensus 124 ~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~--~~~~l~~l~~L~~L~l~~c~~ 190 (323)
.. +.++ ..+..+.+|..|++.+|.-.. +. .-..+.-+++|++|+-.++..
T Consensus 104 ------------~~---lstl-~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 104 ------------KD---LSTL-RPLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred ------------cc---cccc-chhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccCC
Confidence 11 2222 225566778888888875332 21 122455677888877665543
No 58
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.14 E-value=0.003 Score=51.59 Aligned_cols=88 Identities=18% Similarity=0.214 Sum_probs=53.3
Q ss_pred CCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccc
Q 020667 154 LTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAF 233 (323)
Q Consensus 154 L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~ 233 (323)
++.++-+++. +...+ ...+..+++++.|.+.+|..+++.-.+. --+..++|+.|+|++|+++++.... +..
T Consensus 103 IeaVDAsds~-I~~eG-le~L~~l~~i~~l~l~~ck~~dD~~L~~------l~~~~~~L~~L~lsgC~rIT~~GL~-~L~ 173 (221)
T KOG3864|consen 103 IEAVDASDSS-IMYEG-LEHLRDLRSIKSLSLANCKYFDDWCLER------LGGLAPSLQDLDLSGCPRITDGGLA-CLL 173 (221)
T ss_pred EEEEecCCch-HHHHH-HHHHhccchhhhheeccccchhhHHHHH------hcccccchheeeccCCCeechhHHH-HHH
Confidence 4455555443 22211 2345666777777777777766543111 0135678888888888888876553 356
Q ss_pred cCCcccEEeecCCCCCc
Q 020667 234 KFPSLERLVLDDCPSMK 250 (323)
Q Consensus 234 ~l~~L~~L~l~~c~~l~ 250 (323)
.+++|+.|.+.+-+.+.
T Consensus 174 ~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 174 KLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HhhhhHHHHhcCchhhh
Confidence 77888888887765543
No 59
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=94.58 E-value=0.0077 Score=56.11 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=18.9
Q ss_pred CCCCCEEEeecCcCcceecchhHHhccccccEEEEccCc
Q 020667 151 FQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCD 189 (323)
Q Consensus 151 l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~ 189 (323)
+++|+.++++++. +..+.... +..+.+++.+.+.++.
T Consensus 161 l~~L~~l~l~~n~-i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 161 LKSLKLLDLSYNR-IVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred chhhhcccCCcch-hhhhhhhh-hhhccchHHHhccCCc
Confidence 5566666666654 22221101 3556666666666544
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.24 E-value=0.073 Score=46.37 Aligned_cols=88 Identities=15% Similarity=0.165 Sum_probs=46.2
Q ss_pred ccCCcCEEecccccccccccccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEe
Q 020667 80 MFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVV 159 (323)
Q Consensus 80 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l 159 (323)
....+++|++.++ .+..|.....-...+|.|+.|+|+.+|- .+.++++| ....+|+.|.+
T Consensus 69 ~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L----------------~s~I~~lp---~p~~nl~~lVL 128 (418)
T KOG2982|consen 69 SVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSL----------------SSDIKSLP---LPLKNLRVLVL 128 (418)
T ss_pred Hhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcC----------------CCccccCc---ccccceEEEEE
Confidence 4566777777765 3443332111023677888887765421 11122332 13457777777
Q ss_pred ecCcCcceecchhHHhccccccEEEEccC
Q 020667 160 SCCKGLKIVLTFSIAKTLVRLEYMEIESC 188 (323)
Q Consensus 160 ~~c~~l~~l~~~~~l~~l~~L~~L~l~~c 188 (323)
.+-. +.--...+.+..+|.++.|+++.+
T Consensus 129 NgT~-L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 129 NGTG-LSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred cCCC-CChhhhhhhhhcchhhhhhhhccc
Confidence 6542 211111334566777777777665
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.96 E-value=0.0042 Score=53.27 Aligned_cols=83 Identities=20% Similarity=0.328 Sum_probs=54.3
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCT 100 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 100 (323)
.+.+.+.|+..+| ++.++ ++...++.|++|.||-+ .+..+. .+..|.+|++|++..+ .+..+..
T Consensus 17 dl~~vkKLNcwg~-~L~DI---sic~kMp~lEVLsLSvN-kIssL~----------pl~rCtrLkElYLRkN-~I~sldE 80 (388)
T KOG2123|consen 17 DLENVKKLNCWGC-GLDDI---SICEKMPLLEVLSLSVN-KISSLA----------PLQRCTRLKELYLRKN-CIESLDE 80 (388)
T ss_pred HHHHhhhhcccCC-CccHH---HHHHhcccceeEEeecc-ccccch----------hHHHHHHHHHHHHHhc-ccccHHH
Confidence 3667888999986 46664 43578999999998843 333111 1226788888888765 2333322
Q ss_pred cCccccCCCCccEEEEcCCc
Q 020667 101 SNLGILEFPSLKELWISGCP 120 (323)
Q Consensus 101 ~~~~~~~l~~L~~L~l~~cp 120 (323)
... ..++|+|+.|.|..+|
T Consensus 81 L~Y-LknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 81 LEY-LKNLPSLRTLWLDENP 99 (388)
T ss_pred HHH-HhcCchhhhHhhccCC
Confidence 211 2478999999998875
No 62
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.52 E-value=0.055 Score=25.55 Aligned_cols=16 Identities=19% Similarity=0.287 Sum_probs=6.3
Q ss_pred cccEEeecCCCCCcccC
Q 020667 237 SLERLVLDDCPSMKIFS 253 (323)
Q Consensus 237 ~L~~L~l~~c~~l~~lp 253 (323)
+|+.|++++|. ++.+|
T Consensus 2 ~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp T-SEEEETSS---SSE-
T ss_pred ccCEEECCCCC-CCCCc
Confidence 45555555554 44443
No 63
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.26 E-value=0.054 Score=27.45 Aligned_cols=19 Identities=21% Similarity=0.204 Sum_probs=10.8
Q ss_pred cccEEeecCCCCCcccCCCC
Q 020667 237 SLERLVLDDCPSMKIFSEGN 256 (323)
Q Consensus 237 ~L~~L~l~~c~~l~~lp~~~ 256 (323)
+|++|++++| .++.+|.++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~ 19 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSF 19 (22)
T ss_dssp TESEEEETSS-EESEEGTTT
T ss_pred CccEEECCCC-cCEeCChhh
Confidence 3566666665 455666543
No 64
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=93.12 E-value=0.016 Score=51.24 Aligned_cols=91 Identities=11% Similarity=0.075 Sum_probs=50.6
Q ss_pred cCCcccEEeeeccccccee----ccchh------HhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecc
Q 020667 21 GIQNLMHLTLRSCMNLRYL----FSSSI------VSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMF 90 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~----~p~~~------~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~ 90 (323)
+-++|+..++++. .+|- +|+.+ +-.+++|++|+||++.-=. .....++ .-+..+..|++|.+.
T Consensus 56 ~~~~L~~v~~sd~--ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~--~g~~~l~---~ll~s~~~L~eL~L~ 128 (382)
T KOG1909|consen 56 SKKELREVNLSDM--FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP--KGIRGLE---ELLSSCTDLEELYLN 128 (382)
T ss_pred hcccceeeehHhh--hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc--cchHHHH---HHHHhccCHHHHhhh
Confidence 5677888887762 3331 23322 2356789999999864221 1111111 122357889999998
Q ss_pred cccccccccccC-----------ccccCCCCccEEEEcCC
Q 020667 91 NLENFTSFCTSN-----------LGILEFPSLKELWISGC 119 (323)
Q Consensus 91 ~~~~l~~~~~~~-----------~~~~~l~~L~~L~l~~c 119 (323)
+|. ++...... .-+..-+.|+.+...++
T Consensus 129 N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 129 NCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred cCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 884 32211111 00235678999988776
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.14 E-value=0.064 Score=45.63 Aligned_cols=93 Identities=17% Similarity=0.127 Sum_probs=53.1
Q ss_pred CCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecC-
Q 020667 150 SFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCS- 228 (323)
Q Consensus 150 ~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~- 228 (323)
.+++|+.|.++.++.-........+..+|+|++|+++++. +..+.. ...+..+.+|..|++.+|+... +..
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lst------l~pl~~l~nL~~Ldl~n~~~~~-l~dy 134 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLST------LRPLKELENLKSLDLFNCSVTN-LDDY 134 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccc------cchhhhhcchhhhhcccCCccc-cccH
Confidence 4678888888877322222213345566888888888765 222210 0122456677788888876444 211
Q ss_pred -CCccccCCcccEEeecCCCCCc
Q 020667 229 -GNCAFKFPSLERLVLDDCPSMK 250 (323)
Q Consensus 229 -~~~~~~l~~L~~L~l~~c~~l~ 250 (323)
...+..+|+|++|+-.++..-.
T Consensus 135 re~vf~ll~~L~~LD~~dv~~~E 157 (260)
T KOG2739|consen 135 REKVFLLLPSLKYLDGCDVDGEE 157 (260)
T ss_pred HHHHHHHhhhhccccccccCCcc
Confidence 1123357788888777765543
No 66
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=91.61 E-value=0.32 Score=40.06 Aligned_cols=82 Identities=18% Similarity=0.308 Sum_probs=39.6
Q ss_pred cccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccCc
Q 020667 24 NLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSNL 103 (323)
Q Consensus 24 ~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 103 (323)
+...+++++ +.+..+ +. +..++.|.+|.+.++. +. .+....+ ..+|+|..|.+.++ ++..+.....
T Consensus 43 ~~d~iDLtd-Ndl~~l-~~--lp~l~rL~tLll~nNr-It--~I~p~L~------~~~p~l~~L~LtnN-si~~l~dl~p 108 (233)
T KOG1644|consen 43 QFDAIDLTD-NDLRKL-DN--LPHLPRLHTLLLNNNR-IT--RIDPDLD------TFLPNLKTLILTNN-SIQELGDLDP 108 (233)
T ss_pred ccceecccc-cchhhc-cc--CCCccccceEEecCCc-ce--eeccchh------hhccccceEEecCc-chhhhhhcch
Confidence 444555555 444332 33 4556666666666542 33 1111111 14566777776664 2333222111
Q ss_pred cccCCCCccEEEEcCCc
Q 020667 104 GILEFPSLKELWISGCP 120 (323)
Q Consensus 104 ~~~~l~~L~~L~l~~cp 120 (323)
...||.|++|.+-++|
T Consensus 109 -La~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 109 -LASCPKLEYLTLLGNP 124 (233)
T ss_pred -hccCCccceeeecCCc
Confidence 2356677777666654
No 67
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=89.67 E-value=0.038 Score=48.92 Aligned_cols=242 Identities=17% Similarity=0.142 Sum_probs=121.1
Q ss_pred cCCcccEEeeecccccceeccc---hhHhcCCCccEEEEecCCC--CceEEeeccccccCCCccccCCcCEEeccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSS---SIVSSFVRLQRIEIVECPV--LKELIVMDNQEERKNNNVMFPQLQYLKMFNLENF 95 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~---~~~~~l~~L~~L~ls~c~~--l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 95 (323)
.+..++++++++ +.+..-.-. ..+.+.++|+..+++++-- ++. .++.......+.+..+|+|++|+++++-.-
T Consensus 28 ~~~s~~~l~lsg-nt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~-Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 28 PMDSLTKLDLSG-NTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKD-EIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred ccCceEEEeccC-CchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHH-HHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 577889999998 443210011 1145677888888876521 110 011111111223446789999999987422
Q ss_pred ccccccCc-cccCCCCccEEEEcCC---chhhhhc-------------cCCcceee-ecCCCCccccCC-----CCCCCC
Q 020667 96 TSFCTSNL-GILEFPSLKELWISGC---PKFMERY-------------NRTTNILT-ERGCDHLVDLVP-----SSTSFQ 152 (323)
Q Consensus 96 ~~~~~~~~-~~~~l~~L~~L~l~~c---p~~~~~l-------------~~L~~L~~-i~~~~~l~~l~~-----~~~~l~ 152 (323)
...+.... -...+.+|++|.+.+| |..-+.+ ++-..|+. +.+-+.+.+.+. .+...+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 11111100 0236889999999999 3221111 11112211 233333332211 123346
Q ss_pred CCCEEEeecCcCcce-e-cchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCC
Q 020667 153 NLTNLVVSCCKGLKI-V-LTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGN 230 (323)
Q Consensus 153 ~L~~L~l~~c~~l~~-l-~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~ 230 (323)
.|+.+.+..+.-... . -....+..++.|+.|++.++..-..-. ..-...+..+++|++|++.+| .++.-....
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs----~~LakaL~s~~~L~El~l~dc-ll~~~Ga~a 260 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS----VALAKALSSWPHLRELNLGDC-LLENEGAIA 260 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH----HHHHHHhcccchheeeccccc-ccccccHHH
Confidence 677777766532111 0 002245667888888887765322211 000122356778888888887 444321100
Q ss_pred ----ccccCCcccEEeecCCCCCc----ccCCCCCCCCCcceeEccC
Q 020667 231 ----CAFKFPSLERLVLDDCPSMK----IFSEGNSSTPKLHEVQWPG 269 (323)
Q Consensus 231 ----~~~~l~~L~~L~l~~c~~l~----~lp~~~~~~~~L~~L~l~~ 269 (323)
.....|+|+.|.+.+|.--. .+-..+..-|.|++|.+.|
T Consensus 261 ~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLng 307 (382)
T KOG1909|consen 261 FVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNG 307 (382)
T ss_pred HHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCc
Confidence 11247888888887764322 1222223467888888844
No 68
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=87.54 E-value=0.28 Score=25.87 Aligned_cols=16 Identities=38% Similarity=0.605 Sum_probs=9.7
Q ss_pred CcccEEeeecccccce
Q 020667 23 QNLMHLTLRSCMNLRY 38 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~ 38 (323)
++|++|+|++|.++++
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 5566666666666553
No 69
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=86.84 E-value=0.26 Score=45.93 Aligned_cols=80 Identities=20% Similarity=0.149 Sum_probs=45.7
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCT 100 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 100 (323)
.+.+|..|++.+ +.++.+... +..+++|++|++++.. ++.+. .+..++.|+.|++.++. +..+..
T Consensus 93 ~~~~l~~l~l~~-n~i~~i~~~--l~~~~~L~~L~ls~N~-I~~i~----------~l~~l~~L~~L~l~~N~-i~~~~~ 157 (414)
T KOG0531|consen 93 KLKSLEALDLYD-NKIEKIENL--LSSLVNLQVLDLSFNK-ITKLE----------GLSTLTLLKELNLSGNL-ISDISG 157 (414)
T ss_pred cccceeeeeccc-cchhhcccc--hhhhhcchheeccccc-ccccc----------chhhccchhhheeccCc-chhccC
Confidence 677788888877 777765332 4567788888877643 22111 11145556666666652 333332
Q ss_pred cCccccCCCCccEEEEcCC
Q 020667 101 SNLGILEFPSLKELWISGC 119 (323)
Q Consensus 101 ~~~~~~~l~~L~~L~l~~c 119 (323)
. ..+++|+.+++.++
T Consensus 158 ~----~~l~~L~~l~l~~n 172 (414)
T KOG0531|consen 158 L----ESLKSLKLLDLSYN 172 (414)
T ss_pred C----ccchhhhcccCCcc
Confidence 2 13566666666665
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=85.11 E-value=6.3 Score=29.46 Aligned_cols=101 Identities=14% Similarity=0.190 Sum_probs=43.9
Q ss_pred CCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCC
Q 020667 150 SFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSG 229 (323)
Q Consensus 150 ~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~ 229 (323)
+.++|+.+.+.+ .++.+. ...+.++++|+.+.+.+ .+..+. ...+..+++++.+.+.+ .+..++..
T Consensus 10 ~~~~l~~i~~~~--~~~~I~-~~~F~~~~~l~~i~~~~--~~~~i~-------~~~F~~~~~l~~i~~~~--~~~~i~~~ 75 (129)
T PF13306_consen 10 NCSNLESITFPN--TIKKIG-ENAFSNCTSLKSINFPN--NLTSIG-------DNAFSNCKSLESITFPN--NLKSIGDN 75 (129)
T ss_dssp T-TT--EEEETS--T--EE--TTTTTT-TT-SEEEESS--TTSCE--------TTTTTT-TT-EEEEETS--TT-EE-TT
T ss_pred CCCCCCEEEECC--CeeEeC-hhhcccccccccccccc--cccccc-------eeeeecccccccccccc--cccccccc
Confidence 445667666653 344442 22355666777777765 244444 12234455677777754 55555543
Q ss_pred CccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEc
Q 020667 230 NCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQW 267 (323)
Q Consensus 230 ~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l 267 (323)
. +..+++|+.+.+.. .+..++.....-.+|+.+.+
T Consensus 76 ~-F~~~~~l~~i~~~~--~~~~i~~~~f~~~~l~~i~~ 110 (129)
T PF13306_consen 76 A-FSNCTNLKNIDIPS--NITEIGSSSFSNCNLKEINI 110 (129)
T ss_dssp T-TTT-TTECEEEETT--T-BEEHTTTTTT-T--EEE-
T ss_pred c-ccccccccccccCc--cccEEchhhhcCCCceEEEE
Confidence 2 34567777777743 25555544332236777766
No 71
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=82.70 E-value=0.07 Score=41.18 Aligned_cols=101 Identities=17% Similarity=0.154 Sum_probs=55.4
Q ss_pred CCEEEeecCcCcceec-chhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCcc
Q 020667 154 LTNLVVSCCKGLKIVL-TFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCA 232 (323)
Q Consensus 154 L~~L~l~~c~~l~~l~-~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~ 232 (323)
+-.+++++|.. ..+. .+..+.....|...+++++. +..+|. .-...+|.++.|++.+ .++.++|.+.
T Consensus 29 ~h~ldLssc~l-m~i~davy~l~~~~el~~i~ls~N~-fk~fp~-------kft~kf~t~t~lNl~~-neisdvPeE~-- 96 (177)
T KOG4579|consen 29 LHFLDLSSCQL-MYIADAVYMLSKGYELTKISLSDNG-FKKFPK-------KFTIKFPTATTLNLAN-NEISDVPEEL-- 96 (177)
T ss_pred hhhcccccchh-hHHHHHHHHHhCCceEEEEecccch-hhhCCH-------HHhhccchhhhhhcch-hhhhhchHHH--
Confidence 44566666642 2221 12233444455666776653 455541 1113566777888877 5777887763
Q ss_pred ccCCcccEEeecCCCCCcccCCCCCCCCCcceeEc
Q 020667 233 FKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQW 267 (323)
Q Consensus 233 ~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l 267 (323)
..+|.|+.|+++.++ +...|.-+..+.++-.|+.
T Consensus 97 Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 97 AAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred hhhHHhhhcccccCc-cccchHHHHHHHhHHHhcC
Confidence 668888888887744 4445554433333334433
No 72
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=81.97 E-value=0.21 Score=38.62 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=20.7
Q ss_pred ccCCcCEEecccccccccccccCccccCCCCccEEEEcCCc
Q 020667 80 MFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCP 120 (323)
Q Consensus 80 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp 120 (323)
.|+.++.|++.++ .+.++|... ..++.|+.|+++.+|
T Consensus 75 kf~t~t~lNl~~n-eisdvPeE~---Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 75 KFPTATTLNLANN-EISDVPEEL---AAMPALRSLNLRFNP 111 (177)
T ss_pred ccchhhhhhcchh-hhhhchHHH---hhhHHhhhcccccCc
Confidence 4455566666554 455555552 356666666666653
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=79.82 E-value=8.3 Score=28.81 Aligned_cols=81 Identities=19% Similarity=0.245 Sum_probs=47.0
Q ss_pred HHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCccc
Q 020667 173 IAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIF 252 (323)
Q Consensus 173 ~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l 252 (323)
.+.++++|+.+.+.. .+..+. ...+..+++|+.+.+.+ .++.++... +..+++|+++.+.+ .+..+
T Consensus 7 ~F~~~~~l~~i~~~~--~~~~I~-------~~~F~~~~~l~~i~~~~--~~~~i~~~~-F~~~~~l~~i~~~~--~~~~i 72 (129)
T PF13306_consen 7 AFYNCSNLESITFPN--TIKKIG-------ENAFSNCTSLKSINFPN--NLTSIGDNA-FSNCKSLESITFPN--NLKSI 72 (129)
T ss_dssp TTTT-TT--EEEETS--T--EE--------TTTTTT-TT-SEEEESS--TTSCE-TTT-TTT-TT-EEEEETS--TT-EE
T ss_pred HHhCCCCCCEEEECC--CeeEeC-------hhhcccccccccccccc--cccccceee-eecccccccccccc--ccccc
Confidence 356677888888864 455554 23345677899999877 477776644 56677899999965 55566
Q ss_pred CCCCC-CCCCcceeEc
Q 020667 253 SEGNS-STPKLHEVQW 267 (323)
Q Consensus 253 p~~~~-~~~~L~~L~l 267 (323)
+.... .+++|+.+.+
T Consensus 73 ~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 73 GDNAFSNCTNLKNIDI 88 (129)
T ss_dssp -TTTTTT-TTECEEEE
T ss_pred cccccccccccccccc
Confidence 66543 5899999998
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=79.50 E-value=1.3 Score=23.12 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=15.1
Q ss_pred CCcccEEeeecccccceeccchh
Q 020667 22 IQNLMHLTLRSCMNLRYLFSSSI 44 (323)
Q Consensus 22 l~~L~~L~L~~c~~l~~~~p~~~ 44 (323)
+++|++|+|.+ +.++.+ |.++
T Consensus 1 L~~L~~L~L~~-N~l~~l-p~~~ 21 (26)
T smart00370 1 LPNLRELDLSN-NQLSSL-PPGA 21 (26)
T ss_pred CCCCCEEECCC-CcCCcC-CHHH
Confidence 46788888887 678775 6543
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=79.50 E-value=1.3 Score=23.12 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=15.1
Q ss_pred CCcccEEeeecccccceeccchh
Q 020667 22 IQNLMHLTLRSCMNLRYLFSSSI 44 (323)
Q Consensus 22 l~~L~~L~L~~c~~l~~~~p~~~ 44 (323)
+++|++|+|.+ +.++.+ |.++
T Consensus 1 L~~L~~L~L~~-N~l~~l-p~~~ 21 (26)
T smart00369 1 LPNLRELDLSN-NQLSSL-PPGA 21 (26)
T ss_pred CCCCCEEECCC-CcCCcC-CHHH
Confidence 46788888887 678775 6543
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=56.95 E-value=6.2 Score=20.00 Aligned_cols=10 Identities=10% Similarity=0.408 Sum_probs=3.5
Q ss_pred CccEEEEecC
Q 020667 50 RLQRIEIVEC 59 (323)
Q Consensus 50 ~L~~L~ls~c 59 (323)
+|++|+|++|
T Consensus 3 ~L~~L~l~~n 12 (24)
T PF13516_consen 3 NLETLDLSNN 12 (24)
T ss_dssp T-SEEE-TSS
T ss_pred CCCEEEccCC
Confidence 4444444443
No 77
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=55.06 E-value=4.5 Score=35.20 Aligned_cols=97 Identities=12% Similarity=0.060 Sum_probs=47.2
Q ss_pred cCCcccEEeeecccccceeccchh---HhcCCCccEEEEecCCC--CceEEeeccccccCCCccccCCcCEEeccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSI---VSSFVRLQRIEIVECPV--LKELIVMDNQEERKNNNVMFPQLQYLKMFNLENF 95 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~---~~~l~~L~~L~ls~c~~--l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 95 (323)
.+..++.+++++ +.+..-...++ +.+-.+|+..++++.-- .++ .++++..-..+.+-.||+|+..+++++..-
T Consensus 28 ~~d~~~evdLSG-NtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kd-e~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 28 MMDELVEVDLSG-NTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKD-ELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred hhcceeEEeccC-CcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHH-HHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 567788888887 44332112221 23445555555553210 000 001111111223336788888888876433
Q ss_pred ccccccCc-cccCCCCccEEEEcCC
Q 020667 96 TSFCTSNL-GILEFPSLKELWISGC 119 (323)
Q Consensus 96 ~~~~~~~~-~~~~l~~L~~L~l~~c 119 (323)
...+.... -+..-+.|+.|.+.+|
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecC
Confidence 33322111 0235677888888888
No 78
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=49.70 E-value=11 Score=19.91 Aligned_cols=18 Identities=28% Similarity=0.521 Sum_probs=12.8
Q ss_pred CcccEEeecCCCCCcccCC
Q 020667 236 PSLERLVLDDCPSMKIFSE 254 (323)
Q Consensus 236 ~~L~~L~l~~c~~l~~lp~ 254 (323)
++|++|.+++ +.++++|+
T Consensus 2 ~~L~~L~vs~-N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSN-NQLTSLPE 19 (26)
T ss_pred cccceeecCC-CccccCcc
Confidence 4677888866 56777776
No 79
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=47.40 E-value=16 Score=19.33 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=9.9
Q ss_pred CCcccEEeeecccccce
Q 020667 22 IQNLMHLTLRSCMNLRY 38 (323)
Q Consensus 22 l~~L~~L~L~~c~~l~~ 38 (323)
+.+|++|+++. +.++.
T Consensus 1 L~~L~~L~L~~-NkI~~ 16 (26)
T smart00365 1 LTNLEELDLSQ-NKIKK 16 (26)
T ss_pred CCccCEEECCC-Cccce
Confidence 35677777776 55554
No 80
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=31.68 E-value=22 Score=31.10 Aligned_cols=15 Identities=40% Similarity=0.180 Sum_probs=9.8
Q ss_pred cCCcccEEeecCCCC
Q 020667 234 KFPSLERLVLDDCPS 248 (323)
Q Consensus 234 ~l~~L~~L~l~~c~~ 248 (323)
.+.+|+.|++.++..
T Consensus 212 y~~~LevLDlqDNtf 226 (388)
T COG5238 212 YSHSLEVLDLQDNTF 226 (388)
T ss_pred HhCcceeeeccccch
Confidence 466777777776543
No 81
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=24.29 E-value=28 Score=33.40 Aligned_cols=38 Identities=18% Similarity=0.272 Sum_probs=22.3
Q ss_pred cCCcccEEeeecccccceecc-chhHhcCCCccEEEEecC
Q 020667 21 GIQNLMHLTLRSCMNLRYLFS-SSIVSSFVRLQRIEIVEC 59 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p-~~~~~~l~~L~~L~ls~c 59 (323)
+.+.+..+++++ +++..+-- +++....|+|+.|+|++.
T Consensus 216 n~p~i~sl~lsn-NrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSN-NRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeeccc-chhhchhhhhHHHHhcchhheeecccc
Confidence 566667777776 55544311 112345677777777776
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=23.16 E-value=54 Score=17.31 Aligned_cols=14 Identities=29% Similarity=0.328 Sum_probs=8.8
Q ss_pred CcccEEeeecccccc
Q 020667 23 QNLMHLTLRSCMNLR 37 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~ 37 (323)
++|++|+|++ +.+.
T Consensus 2 ~~L~~LdL~~-N~i~ 15 (28)
T smart00368 2 PSLRELDLSN-NKLG 15 (28)
T ss_pred CccCEEECCC-CCCC
Confidence 4677777776 4443
No 83
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=21.86 E-value=96 Score=18.37 Aligned_cols=12 Identities=17% Similarity=0.476 Sum_probs=5.2
Q ss_pred cchhhhceeeec
Q 020667 277 DDLNTTIQKVIF 288 (323)
Q Consensus 277 ~~l~~~l~~l~~ 288 (323)
+.+|.++..+.+
T Consensus 30 ~~lP~sl~~L~f 41 (44)
T PF05725_consen 30 GSLPNSLKSLSF 41 (44)
T ss_pred CccCCCceEEEe
Confidence 344444444443
No 84
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=21.34 E-value=50 Score=17.47 Aligned_cols=13 Identities=8% Similarity=0.391 Sum_probs=8.3
Q ss_pred HhcCCCccEEEEe
Q 020667 45 VSSFVRLQRIEIV 57 (323)
Q Consensus 45 ~~~l~~L~~L~ls 57 (323)
+..+|+|+.||..
T Consensus 9 i~~LPqL~~LD~~ 21 (26)
T smart00446 9 IRLLPQLRKLDXX 21 (26)
T ss_pred HHHCCccceeccc
Confidence 4566777777654
Done!