Query 020667
Match_columns 323
No_of_seqs 244 out of 2243
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 06:26:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020667.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020667hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 8E-21 2.7E-25 169.8 16.9 214 22-267 80-308 (328)
2 3rgz_A Protein brassinosteroid 99.8 5.3E-20 1.8E-24 182.4 16.1 152 22-190 393-550 (768)
3 3rgz_A Protein brassinosteroid 99.8 8.6E-20 2.9E-24 180.9 16.4 240 13-282 409-723 (768)
4 4fcg_A Uncharacterized protein 99.8 4.2E-19 1.4E-23 158.6 18.0 209 47-287 79-301 (328)
5 1ogq_A PGIP-2, polygalacturona 99.8 1.7E-19 5.8E-24 160.1 14.7 228 23-281 50-286 (313)
6 1ogq_A PGIP-2, polygalacturona 99.8 1.4E-19 4.9E-24 160.6 12.4 226 13-269 67-300 (313)
7 2id5_A Lingo-1, leucine rich r 99.8 8.8E-18 3E-22 157.4 22.2 41 16-59 50-90 (477)
8 3v47_A TOLL-like receptor 5B a 99.8 9.3E-18 3.2E-22 156.2 19.5 44 15-60 47-90 (455)
9 2id5_A Lingo-1, leucine rich r 99.8 6.2E-18 2.1E-22 158.5 18.4 236 14-269 72-329 (477)
10 3v47_A TOLL-like receptor 5B a 99.8 1.9E-17 6.4E-22 154.1 20.7 245 15-280 72-412 (455)
11 3t6q_A CD180 antigen; protein- 99.8 7.2E-18 2.5E-22 162.6 18.4 234 18-267 274-530 (606)
12 2z66_A Variable lymphocyte rec 99.8 1.1E-17 3.6E-22 147.8 17.1 222 22-269 27-257 (306)
13 3zyi_A Leucine-rich repeat-con 99.8 2.2E-17 7.5E-22 153.8 20.0 217 23-269 75-299 (452)
14 4eco_A Uncharacterized protein 99.8 8E-18 2.7E-22 163.3 17.6 214 35-269 194-442 (636)
15 3zyj_A Leucine-rich repeat-con 99.8 2.7E-17 9.3E-22 152.6 20.1 217 23-269 64-288 (440)
16 3o6n_A APL1; leucine-rich repe 99.8 3E-17 1E-21 149.9 18.4 84 174-269 244-327 (390)
17 3t6q_A CD180 antigen; protein- 99.8 2.5E-17 8.4E-22 158.8 18.6 238 14-269 293-556 (606)
18 3vq2_A TLR4, TOLL-like recepto 99.7 2.8E-17 9.7E-22 158.4 17.1 171 80-267 348-528 (606)
19 3vq2_A TLR4, TOLL-like recepto 99.7 3.9E-17 1.3E-21 157.4 17.1 229 18-269 303-554 (606)
20 3o53_A Protein LRIM1, AGAP0063 99.7 3E-17 1E-21 145.8 15.0 216 21-276 32-250 (317)
21 3oja_B Anopheles plasmodium-re 99.7 7E-17 2.4E-21 155.6 18.0 98 21-132 73-176 (597)
22 1xku_A Decorin; proteoglycan, 99.7 1.2E-16 4E-21 142.6 18.2 213 23-269 52-272 (330)
23 4ecn_A Leucine-rich repeat pro 99.7 2.5E-16 8.6E-21 156.7 20.4 235 21-269 489-785 (876)
24 2z80_A TOLL-like receptor 2, v 99.7 3.9E-17 1.3E-21 147.2 13.3 228 23-280 52-318 (353)
25 2z63_A TOLL-like receptor 4, v 99.7 1.8E-16 6.3E-21 151.4 18.3 242 12-279 272-534 (570)
26 3oja_A Leucine-rich immune mol 99.7 7.8E-17 2.7E-21 151.5 15.2 212 21-269 32-246 (487)
27 4eco_A Uncharacterized protein 99.7 1.4E-17 4.7E-22 161.7 10.1 235 14-269 198-497 (636)
28 2z81_A CD282 antigen, TOLL-lik 99.7 1E-16 3.5E-21 152.6 16.1 81 208-290 359-440 (549)
29 4fmz_A Internalin; leucine ric 99.7 2.3E-16 7.9E-21 141.6 17.1 144 18-188 84-231 (347)
30 2xwt_C Thyrotropin receptor; s 99.7 4.7E-16 1.6E-20 132.3 18.2 200 23-269 31-235 (239)
31 3o6n_A APL1; leucine-rich repe 99.7 1.6E-16 5.5E-21 145.0 16.3 111 147-277 243-353 (390)
32 3oja_B Anopheles plasmodium-re 99.7 1.4E-16 4.7E-21 153.6 16.4 90 15-119 92-181 (597)
33 2ft3_A Biglycan; proteoglycan, 99.7 5.1E-16 1.8E-20 138.6 17.8 217 17-269 73-303 (332)
34 1ziw_A TOLL-like receptor 3; i 99.7 1.1E-15 3.7E-20 149.3 20.5 241 17-269 324-593 (680)
35 1ozn_A Reticulon 4 receptor; N 99.7 5E-16 1.7E-20 135.6 15.7 204 21-269 30-234 (285)
36 2ft3_A Biglycan; proteoglycan, 99.7 4.4E-16 1.5E-20 139.0 15.4 212 23-269 54-273 (332)
37 1o6v_A Internalin A; bacterial 99.7 3.8E-15 1.3E-19 139.2 22.4 91 18-119 108-209 (466)
38 4fmz_A Internalin; leucine ric 99.7 2E-15 7E-20 135.4 19.5 187 17-245 61-252 (347)
39 1xku_A Decorin; proteoglycan, 99.7 2.1E-15 7.3E-20 134.5 19.4 218 16-269 70-302 (330)
40 3j0a_A TOLL-like receptor 5; m 99.7 2.6E-15 8.8E-20 150.2 22.1 43 15-59 41-83 (844)
41 4ecn_A Leucine-rich repeat pro 99.7 1.2E-16 4E-21 159.0 12.0 234 14-269 440-737 (876)
42 3zyj_A Leucine-rich repeat-con 99.7 1.2E-15 4E-20 141.6 17.6 203 15-247 81-290 (440)
43 3zyi_A Leucine-rich repeat-con 99.7 1.3E-15 4.4E-20 141.8 17.8 203 15-247 92-301 (452)
44 4ay9_X Follicle-stimulating ho 99.7 1E-15 3.6E-20 137.7 16.4 217 23-268 30-254 (350)
45 2ast_B S-phase kinase-associat 99.7 6.6E-18 2.2E-22 151.0 1.1 114 148-270 164-282 (336)
46 2z7x_B TOLL-like receptor 1, v 99.7 1.2E-15 4.1E-20 144.4 16.2 86 15-119 38-125 (520)
47 2z62_A TOLL-like receptor 4, v 99.7 5.2E-15 1.8E-19 128.6 18.8 206 23-278 28-239 (276)
48 2z63_A TOLL-like receptor 4, v 99.7 2E-15 6.7E-20 144.3 17.2 111 147-269 391-503 (570)
49 2z81_A CD282 antigen, TOLL-lik 99.7 1.5E-15 5E-20 144.6 16.2 129 126-280 386-514 (549)
50 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1.6E-15 5.6E-20 145.0 16.3 88 15-119 69-156 (562)
51 3oja_A Leucine-rich immune mol 99.7 2.2E-16 7.6E-21 148.3 9.8 212 14-267 50-269 (487)
52 2z66_A Variable lymphocyte rec 99.7 3.3E-15 1.1E-19 131.7 16.7 203 18-248 48-260 (306)
53 2z80_A TOLL-like receptor 2, v 99.7 6.6E-16 2.3E-20 139.1 12.2 214 17-250 71-315 (353)
54 2z7x_B TOLL-like receptor 1, v 99.6 3.3E-15 1.1E-19 141.3 17.5 129 126-267 323-475 (520)
55 3rfs_A Internalin B, repeat mo 99.6 1.5E-15 5.1E-20 131.9 13.8 212 18-290 37-249 (272)
56 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 3.8E-15 1.3E-19 142.4 17.9 143 126-277 352-511 (562)
57 3o53_A Protein LRIM1, AGAP0063 99.6 2E-16 6.9E-21 140.4 8.0 212 15-268 51-270 (317)
58 1p9a_G Platelet glycoprotein I 99.6 8.1E-15 2.8E-19 128.5 17.7 199 18-269 6-204 (290)
59 3bz5_A Internalin-J, INLJ; leu 99.6 6.1E-15 2.1E-19 137.4 17.9 40 15-59 35-74 (457)
60 1ozn_A Reticulon 4 receptor; N 99.6 6.7E-15 2.3E-19 128.4 17.0 196 26-269 14-210 (285)
61 1ziw_A TOLL-like receptor 3; i 99.6 7E-15 2.4E-19 143.6 17.9 226 23-268 25-304 (680)
62 3j0a_A TOLL-like receptor 5; m 99.6 9.8E-15 3.4E-19 146.0 19.3 127 22-163 23-159 (844)
63 1o6v_A Internalin A; bacterial 99.6 1.7E-14 5.9E-19 134.7 19.5 220 18-269 130-384 (466)
64 3bz5_A Internalin-J, INLJ; leu 99.6 1.1E-14 3.9E-19 135.6 17.8 57 208-267 284-346 (457)
65 1wwl_A Monocyte differentiatio 99.6 8.2E-16 2.8E-20 136.2 9.0 52 209-267 252-303 (312)
66 1jl5_A Outer protein YOPM; leu 99.6 2.1E-14 7.2E-19 133.7 15.4 232 17-290 148-425 (454)
67 2ast_B S-phase kinase-associat 99.6 1.6E-15 5.6E-20 135.3 7.4 231 23-284 70-314 (336)
68 1h6u_A Internalin H; cell adhe 99.6 2.2E-14 7.7E-19 126.7 14.6 187 21-268 39-225 (308)
69 2o6q_A Variable lymphocyte rec 99.6 9.6E-14 3.3E-18 120.2 18.3 198 22-269 15-214 (270)
70 3g06_A SSPH2 (leucine-rich rep 99.6 2.7E-14 9.3E-19 137.5 15.4 87 178-286 221-307 (622)
71 2xwt_C Thyrotropin receptor; s 99.6 5.9E-14 2E-18 119.3 15.7 183 17-248 50-238 (239)
72 1wwl_A Monocyte differentiatio 99.5 3.2E-15 1.1E-19 132.3 5.6 236 21-277 41-288 (312)
73 3rfs_A Internalin B, repeat mo 99.5 3.2E-14 1.1E-18 123.4 11.7 191 15-261 56-247 (272)
74 2z62_A TOLL-like receptor 4, v 99.5 1.7E-13 5.8E-18 118.9 15.8 197 16-265 46-246 (276)
75 1jl5_A Outer protein YOPM; leu 99.5 3.5E-14 1.2E-18 132.2 11.2 71 207-290 234-306 (454)
76 4glp_A Monocyte differentiatio 99.5 7.1E-14 2.4E-18 123.5 12.5 194 48-267 90-301 (310)
77 2o6q_A Variable lymphocyte rec 99.5 2.4E-13 8.1E-18 117.8 15.0 180 23-248 37-217 (270)
78 2ca6_A RAN GTPase-activating p 99.5 1.3E-15 4.4E-20 138.9 0.1 237 15-269 25-312 (386)
79 1p9a_G Platelet glycoprotein I 99.5 1.1E-12 3.6E-17 114.9 16.0 177 22-248 30-207 (290)
80 1h6u_A Internalin H; cell adhe 99.5 8.2E-13 2.8E-17 116.6 14.6 176 17-253 58-233 (308)
81 3ogk_B Coronatine-insensitive 99.5 3.6E-14 1.2E-18 136.2 5.6 106 77-186 288-411 (592)
82 2p1m_B Transport inhibitor res 99.5 1.3E-14 4.6E-19 139.2 2.4 163 21-188 103-324 (594)
83 4ay9_X Follicle-stimulating ho 99.5 9.1E-13 3.1E-17 118.4 14.2 199 17-245 49-255 (350)
84 4g8a_A TOLL-like receptor 4; l 99.4 3.4E-12 1.2E-16 123.0 17.4 174 80-269 395-576 (635)
85 4ezg_A Putative uncharacterize 99.4 2.2E-12 7.6E-17 106.2 12.2 149 21-220 42-191 (197)
86 4ezg_A Putative uncharacterize 99.4 3.2E-12 1.1E-16 105.3 12.4 151 46-246 41-191 (197)
87 1h6t_A Internalin B; cell adhe 99.4 2.6E-12 8.9E-17 112.5 12.0 168 21-247 44-211 (291)
88 3m19_A Variable lymphocyte rec 99.4 1.1E-11 3.8E-16 105.9 15.2 157 82-277 35-193 (251)
89 3ogk_B Coronatine-insensitive 99.4 7.8E-14 2.7E-18 133.8 1.8 206 45-271 289-524 (592)
90 4g8a_A TOLL-like receptor 4; l 99.4 1.9E-11 6.4E-16 117.8 18.4 249 21-290 304-576 (635)
91 1h6t_A Internalin B; cell adhe 99.4 1.8E-12 6.1E-17 113.5 9.8 188 21-269 22-209 (291)
92 3cvr_A Invasion plasmid antige 99.4 4.1E-12 1.4E-16 121.0 12.7 188 24-287 60-254 (571)
93 1m9s_A Internalin B; cell inva 99.4 2.7E-12 9.3E-17 123.3 11.2 170 18-247 39-208 (605)
94 1m9s_A Internalin B; cell inva 99.3 1.8E-12 6.2E-17 124.5 9.4 188 21-269 19-206 (605)
95 3g06_A SSPH2 (leucine-rich rep 99.3 1.5E-11 5.1E-16 118.4 15.7 198 21-254 79-302 (622)
96 1z7x_W Ribonuclease inhibitor; 99.3 5.9E-14 2E-18 130.6 -1.5 107 79-189 167-295 (461)
97 3goz_A Leucine-rich repeat-con 99.3 1.7E-13 6E-18 123.7 1.1 241 14-269 14-293 (362)
98 2ca6_A RAN GTPase-activating p 99.3 3.5E-13 1.2E-17 122.7 3.1 216 18-249 56-316 (386)
99 2p1m_B Transport inhibitor res 99.3 9.8E-14 3.4E-18 133.1 -0.8 152 18-185 62-242 (594)
100 4glp_A Monocyte differentiatio 99.3 6.3E-12 2.2E-16 111.0 10.5 200 21-248 89-306 (310)
101 3m19_A Variable lymphocyte rec 99.3 2E-11 6.9E-16 104.3 12.3 154 23-220 35-189 (251)
102 1z7x_W Ribonuclease inhibitor; 99.3 4.9E-13 1.7E-17 124.3 0.2 128 21-163 26-181 (461)
103 2o6s_A Variable lymphocyte rec 99.2 4.6E-11 1.6E-15 99.1 10.5 139 80-260 50-189 (208)
104 1xeu_A Internalin C; cellular 99.2 2E-11 6.8E-16 105.3 7.7 167 21-247 17-183 (263)
105 2o6s_A Variable lymphocyte rec 99.2 1.1E-10 3.7E-15 96.7 11.6 164 80-288 26-190 (208)
106 3e6j_A Variable lymphocyte rec 99.1 2.5E-10 8.7E-15 96.1 10.9 147 25-219 21-168 (229)
107 1xeu_A Internalin C; cellular 99.1 2.5E-10 8.7E-15 98.3 10.6 152 17-226 36-187 (263)
108 2v70_A SLIT-2, SLIT homolog 2 99.1 5.7E-10 2E-14 93.4 11.7 148 26-219 14-162 (220)
109 1dce_A Protein (RAB geranylger 99.1 1.4E-12 4.7E-17 124.5 -6.0 107 143-266 455-566 (567)
110 2ell_A Acidic leucine-rich nuc 99.1 2.1E-10 7.1E-15 91.7 7.6 131 21-189 22-158 (168)
111 2v9t_B SLIT homolog 2 protein 99.1 9.5E-10 3.3E-14 92.0 11.9 61 149-219 101-161 (220)
112 2v9t_B SLIT homolog 2 protein 99.1 2.3E-09 7.8E-14 89.7 14.1 107 148-267 52-159 (220)
113 2v70_A SLIT-2, SLIT homolog 2 99.1 2.3E-09 8E-14 89.6 14.1 107 149-267 54-160 (220)
114 3cvr_A Invasion plasmid antige 99.1 6.9E-10 2.4E-14 105.7 12.0 172 22-256 79-250 (571)
115 3goz_A Leucine-rich repeat-con 99.1 2.6E-11 8.9E-16 109.4 1.5 215 16-247 44-295 (362)
116 3e6j_A Variable lymphocyte rec 99.0 3.8E-09 1.3E-13 88.9 14.0 146 84-268 21-167 (229)
117 3sb4_A Hypothetical leucine ri 99.0 2.8E-09 9.4E-14 94.7 12.9 15 22-37 48-62 (329)
118 2xot_A Amphoterin-induced prot 99.0 1.5E-09 5.3E-14 97.7 11.3 83 23-119 39-122 (361)
119 2ell_A Acidic leucine-rich nuc 99.0 2.9E-10 1E-14 90.8 4.4 131 107-269 22-156 (168)
120 2je0_A Acidic leucine-rich nuc 98.9 3.3E-09 1.1E-13 82.8 8.8 129 81-244 16-148 (149)
121 1dce_A Protein (RAB geranylger 98.9 3.5E-11 1.2E-15 114.8 -3.5 203 21-243 347-567 (567)
122 1a9n_A U2A', U2A'; complex (nu 98.9 2.6E-09 8.9E-14 86.0 8.0 130 18-189 15-151 (176)
123 2je0_A Acidic leucine-rich nuc 98.9 8.3E-10 2.9E-14 86.3 4.3 128 107-267 15-147 (149)
124 2xot_A Amphoterin-induced prot 98.9 1.7E-08 5.9E-13 90.8 13.1 155 81-269 38-198 (361)
125 4b8c_D Glucose-repressible alc 98.9 3.1E-09 1.1E-13 104.4 8.5 86 148-248 243-328 (727)
126 1w8a_A SLIT protein; signaling 98.9 1.9E-08 6.6E-13 82.1 11.6 123 140-278 19-141 (192)
127 1a9n_A U2A', U2A'; complex (nu 98.8 1.1E-08 3.9E-13 82.2 8.6 37 150-188 62-98 (176)
128 4b8c_D Glucose-repressible alc 98.8 3.3E-09 1.1E-13 104.2 4.0 63 43-119 218-280 (727)
129 1w8a_A SLIT protein; signaling 98.7 1.3E-07 4.3E-12 77.2 11.4 89 148-248 50-138 (192)
130 1ds9_A Outer arm dynein; leuci 98.7 2E-10 7E-15 94.4 -5.9 108 45-189 44-151 (198)
131 2wfh_A SLIT homolog 2 protein 98.7 1.1E-07 3.8E-12 77.7 10.5 102 152-267 31-133 (193)
132 2o6r_A Variable lymphocyte rec 98.7 1.7E-07 5.9E-12 75.2 11.5 123 140-280 18-141 (177)
133 4fdw_A Leucine rich hypothetic 98.7 2.2E-06 7.6E-11 78.1 19.8 200 80-303 178-392 (401)
134 2wfh_A SLIT homolog 2 protein 98.7 1.8E-07 6.3E-12 76.3 11.4 108 127-248 31-138 (193)
135 1ds9_A Outer arm dynein; leuci 98.6 4.7E-10 1.6E-14 92.2 -5.7 84 150-247 68-151 (198)
136 3e4g_A ATP synthase subunit S, 98.6 3.3E-08 1.1E-12 79.0 4.1 90 152-251 61-154 (176)
137 2o6r_A Variable lymphocyte rec 98.6 4.7E-07 1.6E-11 72.6 10.8 90 148-249 48-137 (177)
138 3sb4_A Hypothetical leucine ri 98.5 1.9E-06 6.5E-11 76.2 14.6 102 151-267 225-328 (329)
139 4fdw_A Leucine rich hypothetic 98.4 1.5E-05 5.2E-10 72.5 18.7 210 23-268 157-378 (401)
140 3e4g_A ATP synthase subunit S, 98.4 9.2E-08 3.1E-12 76.4 2.2 90 22-123 60-153 (176)
141 3g39_A Variable lymphocyte rec 98.3 2.2E-06 7.7E-11 68.3 7.9 85 22-120 29-113 (170)
142 2r9u_A Variable lymphocyte rec 98.3 1.8E-06 6.2E-11 69.1 7.2 85 22-120 32-116 (174)
143 2r9u_A Variable lymphocyte rec 98.3 3.2E-06 1.1E-10 67.7 8.5 57 208-267 55-112 (174)
144 2ifg_A High affinity nerve gro 98.2 3.7E-06 1.3E-10 74.9 9.2 95 140-247 20-114 (347)
145 2ra8_A Uncharacterized protein 98.2 4.7E-06 1.6E-10 74.7 8.7 34 80-119 170-203 (362)
146 3g39_A Variable lymphocyte rec 98.2 6E-06 2E-10 65.8 8.4 57 208-267 52-109 (170)
147 2ifg_A High affinity nerve gro 98.2 4E-06 1.4E-10 74.6 8.1 91 14-120 24-114 (347)
148 4fs7_A Uncharacterized protein 98.0 0.00035 1.2E-08 63.2 18.3 36 18-57 67-102 (394)
149 2ra8_A Uncharacterized protein 98.0 2.9E-06 9.9E-11 76.2 4.0 148 107-284 170-328 (362)
150 4fs7_A Uncharacterized protein 98.0 0.00011 3.7E-09 66.6 14.4 100 149-267 273-373 (394)
151 3un9_A NLR family member X1; l 97.8 2.6E-06 8.9E-11 76.8 0.0 172 22-225 71-253 (372)
152 3un9_A NLR family member X1; l 97.6 7.6E-06 2.6E-10 73.8 -0.5 92 150-247 153-250 (372)
153 4h09_A Hypothetical leucine ri 97.4 0.028 9.4E-07 50.2 21.1 34 21-57 44-77 (379)
154 4gt6_A Cell surface protein; l 97.4 0.0085 2.9E-07 54.0 17.5 229 17-269 82-366 (394)
155 4gt6_A Cell surface protein; l 97.1 0.0088 3E-07 53.9 14.3 222 21-267 61-341 (394)
156 3rw6_A Nuclear RNA export fact 96.0 0.0054 1.8E-07 52.2 4.3 13 80-92 194-206 (267)
157 1io0_A Tropomodulin; LRR prote 95.9 0.0014 4.9E-08 52.5 0.1 90 21-119 34-133 (185)
158 1io0_A Tropomodulin; LRR prote 95.7 0.011 3.9E-07 47.1 4.9 44 45-92 32-75 (185)
159 3rw6_A Nuclear RNA export fact 95.6 0.0054 1.8E-07 52.2 2.8 84 175-266 167-257 (267)
160 4h09_A Hypothetical leucine ri 95.2 1.1 3.6E-05 39.7 16.6 200 23-267 135-340 (379)
161 3rfe_A Platelet glycoprotein I 92.2 0.1 3.5E-06 39.0 3.4 34 24-59 32-65 (130)
162 3rfe_A Platelet glycoprotein I 79.4 3.1 0.00011 30.6 5.2 30 237-267 32-62 (130)
163 1pgv_A TMD-1, tropomodulin TMD 43.4 8.9 0.0003 30.6 1.5 10 110-119 71-80 (197)
164 2lz0_A Uncharacterized protein 42.1 35 0.0012 23.6 4.3 78 233-312 17-98 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=8e-21 Score=169.79 Aligned_cols=214 Identities=19% Similarity=0.218 Sum_probs=137.7
Q ss_pred CCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccccccccc
Q 020667 22 IQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTS 101 (323)
Q Consensus 22 l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 101 (323)
.+++++|++++ ++++.+ |.. ++.+++|++|+++++. +. .++ ..+..+++|++|+++++ .+..+|..
T Consensus 80 ~~~l~~L~L~~-n~l~~l-p~~-l~~l~~L~~L~L~~n~-l~--~lp-------~~~~~l~~L~~L~Ls~n-~l~~lp~~ 145 (328)
T 4fcg_A 80 QPGRVALELRS-VPLPQF-PDQ-AFRLSHLQHMTIDAAG-LM--ELP-------DTMQQFAGLETLTLARN-PLRALPAS 145 (328)
T ss_dssp STTCCEEEEES-SCCSSC-CSC-GGGGTTCSEEEEESSC-CC--CCC-------SCGGGGTTCSEEEEESC-CCCCCCGG
T ss_pred ccceeEEEccC-CCchhc-Chh-hhhCCCCCEEECCCCC-cc--chh-------HHHhccCCCCEEECCCC-ccccCcHH
Confidence 47889999998 667764 655 6679999999998774 33 222 33447889999999887 45677665
Q ss_pred CccccCCCCccEEEEcCCc------hhhh---------hccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcc
Q 020667 102 NLGILEFPSLKELWISGCP------KFME---------RYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLK 166 (323)
Q Consensus 102 ~~~~~~l~~L~~L~l~~cp------~~~~---------~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~ 166 (323)
. ..+++|++|++++|. ..+. .+++|+.| .+.+| .+..+|..+..+++|++|++++|. ++
T Consensus 146 l---~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L-~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~-l~ 219 (328)
T 4fcg_A 146 I---ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL-RLEWT-GIRSLPASIANLQNLKSLKIRNSP-LS 219 (328)
T ss_dssp G---GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEE-EEEEE-CCCCCCGGGGGCTTCCEEEEESSC-CC
T ss_pred H---hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEE-ECcCC-CcCcchHhhcCCCCCCEEEccCCC-CC
Confidence 3 478899999998873 2111 13444444 33433 333555566666677777776664 33
Q ss_pred eecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCC
Q 020667 167 IVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDC 246 (323)
Q Consensus 167 ~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c 246 (323)
.+ +..+..+++|++|++++|...+.++ ..+..+++|+.|++++|..+..++.. +..+++|++|++++|
T Consensus 220 ~l--~~~l~~l~~L~~L~Ls~n~~~~~~p--------~~~~~l~~L~~L~L~~n~~~~~~p~~--~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 220 AL--GPAIHHLPKLEELDLRGCTALRNYP--------PIFGGRAPLKRLILKDCSNLLTLPLD--IHRLTQLEKLDLRGC 287 (328)
T ss_dssp CC--CGGGGGCTTCCEEECTTCTTCCBCC--------CCTTCCCCCCEEECTTCTTCCBCCTT--GGGCTTCCEEECTTC
T ss_pred cC--chhhccCCCCCEEECcCCcchhhhH--------HHhcCCCCCCEEECCCCCchhhcchh--hhcCCCCCEEeCCCC
Confidence 33 3345666667777777666665555 33455666777777766666655543 255666777777776
Q ss_pred CCCcccCCCCCCCCCcceeEc
Q 020667 247 PSMKIFSEGNSSTPKLHEVQW 267 (323)
Q Consensus 247 ~~l~~lp~~~~~~~~L~~L~l 267 (323)
+.++.+|.++..+++|+.+++
T Consensus 288 ~~~~~iP~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 288 VNLSRLPSLIAQLPANCIILV 308 (328)
T ss_dssp TTCCCCCGGGGGSCTTCEEEC
T ss_pred CchhhccHHHhhccCceEEeC
Confidence 666667766666666666666
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.83 E-value=5.3e-20 Score=182.37 Aligned_cols=152 Identities=11% Similarity=-0.005 Sum_probs=77.0
Q ss_pred CCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccccccccc
Q 020667 22 IQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTS 101 (323)
Q Consensus 22 l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 101 (323)
+++|++|++++ +.+++.+|.. ++.+++|++|++++|..-. ..+..+..+++|++|+++++...+.++..
T Consensus 393 ~~~L~~L~L~~-n~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~---------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 461 (768)
T 3rgz_A 393 KNTLQELYLQN-NGFTGKIPPT-LSNCSELVSLHLSFNYLSG---------TIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461 (768)
T ss_dssp TCCCCEEECCS-SEEEEECCGG-GGGCTTCCEEECCSSEEES---------CCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred cCCccEEECCC-CccccccCHH-HhcCCCCCEEECcCCcccC---------cccHHHhcCCCCCEEECCCCcccCcCCHH
Confidence 66777777777 4556555655 5677777777777653111 11222234555555555555333333333
Q ss_pred CccccCCCCccEEEEcCC------chhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHh
Q 020667 102 NLGILEFPSLKELWISGC------PKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAK 175 (323)
Q Consensus 102 ~~~~~~l~~L~~L~l~~c------p~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~ 175 (323)
. ..+++|++|++++| |..+..+++|+.| ++.+|...+.+|.+++.+++|++|++++|...+.+ |..++
T Consensus 462 ~---~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L-~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~ 535 (768)
T 3rgz_A 462 L---MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI-SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI--PAELG 535 (768)
T ss_dssp G---GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE-ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEEC--CGGGG
T ss_pred H---cCCCCceEEEecCCcccCcCCHHHhcCCCCCEE-EccCCccCCcCChHHhcCCCCCEEECCCCcccCcC--CHHHc
Confidence 2 24555555555555 3333444444444 44444444445555555555555555555433333 33445
Q ss_pred ccccccEEEEccCcc
Q 020667 176 TLVRLEYMEIESCDR 190 (323)
Q Consensus 176 ~l~~L~~L~l~~c~~ 190 (323)
.+++|+.|++++|..
T Consensus 536 ~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 536 DCRSLIWLDLNTNLF 550 (768)
T ss_dssp GCTTCCEEECCSSEE
T ss_pred CCCCCCEEECCCCcc
Confidence 555555555555443
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.82 E-value=8.6e-20 Score=180.85 Aligned_cols=240 Identities=13% Similarity=0.026 Sum_probs=179.0
Q ss_pred cccccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccc
Q 020667 13 SQVTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNL 92 (323)
Q Consensus 13 ~~p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 92 (323)
..|..+. .+++|++|++++ +.+++.+|.. ++.+++|++|++++|.... . .+..+..+++|++|+++++
T Consensus 409 ~~p~~l~-~l~~L~~L~Ls~-N~l~~~~p~~-l~~l~~L~~L~L~~n~l~~--~-------~p~~~~~l~~L~~L~L~~N 476 (768)
T 3rgz_A 409 KIPPTLS-NCSELVSLHLSF-NYLSGTIPSS-LGSLSKLRDLKLWLNMLEG--E-------IPQELMYVKTLETLILDFN 476 (768)
T ss_dssp ECCGGGG-GCTTCCEEECCS-SEEESCCCGG-GGGCTTCCEEECCSSCCCS--C-------CCGGGGGCTTCCEEECCSS
T ss_pred ccCHHHh-cCCCCCEEECcC-CcccCcccHH-HhcCCCCCEEECCCCcccC--c-------CCHHHcCCCCceEEEecCC
Confidence 4566777 899999999998 5677766766 6889999999999886443 2 2333447889999999988
Q ss_pred cccccccccCccccCCCCccEEEEcCC------chhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcc
Q 020667 93 ENFTSFCTSNLGILEFPSLKELWISGC------PKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLK 166 (323)
Q Consensus 93 ~~l~~~~~~~~~~~~l~~L~~L~l~~c------p~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~ 166 (323)
...+.++... ..+++|++|++++| |..++.+++|+.| ++.+|...+.+|..+..+++|+.|++++|...+
T Consensus 477 ~l~~~~p~~l---~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L-~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 477 DLTGEIPSGL---SNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL-KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp CCCSCCCGGG---GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE-ECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred cccCcCCHHH---hcCCCCCEEEccCCccCCcCChHHhcCCCCCEE-ECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence 5544555553 47899999999988 5667777888888 688888877888888889999999998886433
Q ss_pred eecc--------------------------------------------------------------------hhHHhccc
Q 020667 167 IVLT--------------------------------------------------------------------FSIAKTLV 178 (323)
Q Consensus 167 ~l~~--------------------------------------------------------------------~~~l~~l~ 178 (323)
.++. +..+..++
T Consensus 553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~ 632 (768)
T 3rgz_A 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632 (768)
T ss_dssp BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence 3311 01123356
Q ss_pred cccEEEEccCcccceeeeccCcccccccccccccCeeecccccccc-eecCCCccccCCcccEEeecCCCCCcccCCCCC
Q 020667 179 RLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLT-SFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNS 257 (323)
Q Consensus 179 ~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~-~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~ 257 (323)
+|+.|++++|...+.+| ..++.+++|+.|+++++ +++ .+|.. +..+++|++|++++|...+.+|..+.
T Consensus 633 ~L~~LdLs~N~l~g~ip--------~~l~~l~~L~~L~Ls~N-~l~g~ip~~--l~~L~~L~~LdLs~N~l~g~ip~~l~ 701 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIP--------KEIGSMPYLFILNLGHN-DISGSIPDE--VGDLRGLNILDLSSNKLDGRIPQAMS 701 (768)
T ss_dssp CCCEEECCSSCCBSCCC--------GGGGGCTTCCEEECCSS-CCCSCCCGG--GGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred cccEEECcCCcccccCC--------HHHhccccCCEEeCcCC-ccCCCCChH--HhCCCCCCEEECCCCcccCcCChHHh
Confidence 78888888877666666 55678888999999886 455 55543 46788999999988877778898888
Q ss_pred CCCCcceeEccCccccccccchhhh
Q 020667 258 STPKLHEVQWPGEARWAWKDDLNTT 282 (323)
Q Consensus 258 ~~~~L~~L~l~~~~~~~~~~~l~~~ 282 (323)
.+++|++|++ +++.+.|.+|..
T Consensus 702 ~l~~L~~L~l---s~N~l~g~iP~~ 723 (768)
T 3rgz_A 702 ALTMLTEIDL---SNNNLSGPIPEM 723 (768)
T ss_dssp GCCCCSEEEC---CSSEEEEECCSS
T ss_pred CCCCCCEEEC---cCCcccccCCCc
Confidence 8899999999 777888877754
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=4.2e-19 Score=158.58 Aligned_cols=209 Identities=17% Similarity=0.243 Sum_probs=170.4
Q ss_pred cCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccCccccCCCCccEEEEcCC-----ch
Q 020667 47 SFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGC-----PK 121 (323)
Q Consensus 47 ~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c-----p~ 121 (323)
..++++.|+++++. +. . .+..+..+++|++|+++++ .+..+|... ..+++|++|++++| |.
T Consensus 79 ~~~~l~~L~L~~n~-l~--~-------lp~~l~~l~~L~~L~L~~n-~l~~lp~~~---~~l~~L~~L~Ls~n~l~~lp~ 144 (328)
T 4fcg_A 79 TQPGRVALELRSVP-LP--Q-------FPDQAFRLSHLQHMTIDAA-GLMELPDTM---QQFAGLETLTLARNPLRALPA 144 (328)
T ss_dssp TSTTCCEEEEESSC-CS--S-------CCSCGGGGTTCSEEEEESS-CCCCCCSCG---GGGTTCSEEEEESCCCCCCCG
T ss_pred cccceeEEEccCCC-ch--h-------cChhhhhCCCCCEEECCCC-CccchhHHH---hccCCCCEEECCCCccccCcH
Confidence 46899999999864 33 2 3334458999999999988 466777653 48999999999998 66
Q ss_pred hhhhccCCcceeeecCCCCccccCCCCCC---------CCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccc
Q 020667 122 FMERYNRTTNILTERGCDHLVDLVPSSTS---------FQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRIT 192 (323)
Q Consensus 122 ~~~~l~~L~~L~~i~~~~~l~~l~~~~~~---------l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~ 192 (323)
.+..+++|+.| .+.+|...+.+|..+.. +++|++|++++|. ++.+ +..+..+++|++|++++|. +.
T Consensus 145 ~l~~l~~L~~L-~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~l--p~~l~~l~~L~~L~L~~N~-l~ 219 (328)
T 4fcg_A 145 SIASLNRLREL-SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSL--PASIANLQNLKSLKIRNSP-LS 219 (328)
T ss_dssp GGGGCTTCCEE-EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCC--CGGGGGCTTCCEEEEESSC-CC
T ss_pred HHhcCcCCCEE-ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcc--hHhhcCCCCCCEEEccCCC-CC
Confidence 67778888888 78889999999887654 9999999999985 5555 5668899999999999986 55
Q ss_pred eeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEccCccc
Q 020667 193 EIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQWPGEAR 272 (323)
Q Consensus 193 ~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~~~~ 272 (323)
.++ ..+..+++|++|++++|.....++.. +..+++|++|++++|+.++.+|..+..+++|++|++ ..
T Consensus 220 ~l~--------~~l~~l~~L~~L~Ls~n~~~~~~p~~--~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L---~~ 286 (328)
T 4fcg_A 220 ALG--------PAIHHLPKLEELDLRGCTALRNYPPI--FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL---RG 286 (328)
T ss_dssp CCC--------GGGGGCTTCCEEECTTCTTCCBCCCC--TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEEC---TT
T ss_pred cCc--------hhhccCCCCCEEECcCCcchhhhHHH--hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeC---CC
Confidence 565 34578999999999999877777654 367999999999999999999999999999999999 56
Q ss_pred cccccchhhhceeee
Q 020667 273 WAWKDDLNTTIQKVI 287 (323)
Q Consensus 273 ~~~~~~l~~~l~~l~ 287 (323)
+.+.+.+|..+..+.
T Consensus 287 n~~~~~iP~~l~~L~ 301 (328)
T 4fcg_A 287 CVNLSRLPSLIAQLP 301 (328)
T ss_dssp CTTCCCCCGGGGGSC
T ss_pred CCchhhccHHHhhcc
Confidence 667777787766544
No 5
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=1.7e-19 Score=160.11 Aligned_cols=228 Identities=16% Similarity=0.053 Sum_probs=165.7
Q ss_pred CcccEEeeecccccce--eccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccc
Q 020667 23 QNLMHLTLRSCMNLRY--LFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCT 100 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~--~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 100 (323)
.++++|++++ +++++ .+|.. ++.+++|++|+++++..+. +..+..+..+++|++|+++++...+.++.
T Consensus 50 ~~l~~L~L~~-~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~--------~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 119 (313)
T 1ogq_A 50 YRVNNLDLSG-LNLPKPYPIPSS-LANLPYLNFLYIGGINNLV--------GPIPPAIAKLTQLHYLYITHTNVSGAIPD 119 (313)
T ss_dssp CCEEEEEEEC-CCCSSCEECCGG-GGGCTTCSEEEEEEETTEE--------SCCCGGGGGCTTCSEEEEEEECCEEECCG
T ss_pred ceEEEEECCC-CCccCCcccChh-HhCCCCCCeeeCCCCCccc--------ccCChhHhcCCCCCEEECcCCeeCCcCCH
Confidence 6789999998 56776 55765 7889999999999644443 12333445889999999988754335555
Q ss_pred cCccccCCCCccEEEEcCC------chhhhhccCCcceeeecCCCCccccCCCCCCCC-CCCEEEeecCcCcceecchhH
Q 020667 101 SNLGILEFPSLKELWISGC------PKFMERYNRTTNILTERGCDHLVDLVPSSTSFQ-NLTNLVVSCCKGLKIVLTFSI 173 (323)
Q Consensus 101 ~~~~~~~l~~L~~L~l~~c------p~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~-~L~~L~l~~c~~l~~l~~~~~ 173 (323)
.. ..+++|++|++++| |..+..+++|++| .+.++...+.+|..+..++ +|++|++++|.....+ +..
T Consensus 120 ~~---~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L-~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~--~~~ 193 (313)
T 1ogq_A 120 FL---SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI-TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI--PPT 193 (313)
T ss_dssp GG---GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE-ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC--CGG
T ss_pred HH---hCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE-ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccC--ChH
Confidence 43 47899999999888 4556667777777 5777766667888888887 8999999988643343 455
Q ss_pred HhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccC
Q 020667 174 AKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFS 253 (323)
Q Consensus 174 l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp 253 (323)
+..++ |+.|++++|...+.++ ..+..+++|+.|+++++ .++..... ...+++|++|++++|...+.+|
T Consensus 194 ~~~l~-L~~L~Ls~N~l~~~~~--------~~~~~l~~L~~L~L~~N-~l~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p 261 (313)
T 1ogq_A 194 FANLN-LAFVDLSRNMLEGDAS--------VLFGSDKNTQKIHLAKN-SLAFDLGK--VGLSKNLNGLDLRNNRIYGTLP 261 (313)
T ss_dssp GGGCC-CSEEECCSSEEEECCG--------GGCCTTSCCSEEECCSS-EECCBGGG--CCCCTTCCEEECCSSCCEECCC
T ss_pred HhCCc-ccEEECcCCcccCcCC--------HHHhcCCCCCEEECCCC-ceeeecCc--ccccCCCCEEECcCCcccCcCC
Confidence 66776 9999999876433333 34467889999999986 45543332 3567899999999877666888
Q ss_pred CCCCCCCCcceeEccCccccccccchhh
Q 020667 254 EGNSSTPKLHEVQWPGEARWAWKDDLNT 281 (323)
Q Consensus 254 ~~~~~~~~L~~L~l~~~~~~~~~~~l~~ 281 (323)
..+..+++|++|++ ..+.+.+.+|.
T Consensus 262 ~~l~~l~~L~~L~L---s~N~l~~~ip~ 286 (313)
T 1ogq_A 262 QGLTQLKFLHSLNV---SFNNLCGEIPQ 286 (313)
T ss_dssp GGGGGCTTCCEEEC---CSSEEEEECCC
T ss_pred hHHhcCcCCCEEEC---cCCcccccCCC
Confidence 88888899999999 66666665554
No 6
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=1.4e-19 Score=160.55 Aligned_cols=226 Identities=12% Similarity=0.071 Sum_probs=172.3
Q ss_pred cccccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccc
Q 020667 13 SQVTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNL 92 (323)
Q Consensus 13 ~~p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 92 (323)
..|..+. .+++|++|++++++++.+.+|.. ++.+++|++|+++++..-. .+ +..+..+++|++|+++++
T Consensus 67 ~~~~~l~-~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~--~~-------p~~~~~l~~L~~L~Ls~N 135 (313)
T 1ogq_A 67 PIPSSLA-NLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSG--AI-------PDFLSQIKTLVTLDFSYN 135 (313)
T ss_dssp ECCGGGG-GCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEE--EC-------CGGGGGCTTCCEEECCSS
T ss_pred ccChhHh-CCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCC--cC-------CHHHhCCCCCCEEeCCCC
Confidence 3567788 99999999999767888777876 7899999999999875432 22 233448999999999998
Q ss_pred cccccccccCccccCCCCccEEEEcCC------chhhhhcc-CCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCc
Q 020667 93 ENFTSFCTSNLGILEFPSLKELWISGC------PKFMERYN-RTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGL 165 (323)
Q Consensus 93 ~~l~~~~~~~~~~~~l~~L~~L~l~~c------p~~~~~l~-~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l 165 (323)
.....++... ..+++|++|++++| |..+..++ .|+.| .+.++...+.+|..+..++ |++|++++|. +
T Consensus 136 ~l~~~~p~~~---~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L-~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~-l 209 (313)
T 1ogq_A 136 ALSGTLPPSI---SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM-TISRNRLTGKIPPTFANLN-LAFVDLSRNM-L 209 (313)
T ss_dssp EEESCCCGGG---GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEE-ECCSSEEEEECCGGGGGCC-CSEEECCSSE-E
T ss_pred ccCCcCChHH---hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEE-ECcCCeeeccCChHHhCCc-ccEEECcCCc-c
Confidence 5443555553 48999999999998 44455555 67777 5677666667777777776 9999999986 4
Q ss_pred ceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccc-eecCCCccccCCcccEEeec
Q 020667 166 KIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLT-SFCSGNCAFKFPSLERLVLD 244 (323)
Q Consensus 166 ~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~-~l~~~~~~~~l~~L~~L~l~ 244 (323)
+.. .+..+..+++|+.|++++|.....++ .+..+++|++|+++++ .++ .++. .+..+++|++|+++
T Consensus 210 ~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~---------~~~~l~~L~~L~Ls~N-~l~~~~p~--~l~~l~~L~~L~Ls 276 (313)
T 1ogq_A 210 EGD-ASVLFGSDKNTQKIHLAKNSLAFDLG---------KVGLSKNLNGLDLRNN-RIYGTLPQ--GLTQLKFLHSLNVS 276 (313)
T ss_dssp EEC-CGGGCCTTSCCSEEECCSSEECCBGG---------GCCCCTTCCEEECCSS-CCEECCCG--GGGGCTTCCEEECC
T ss_pred cCc-CCHHHhcCCCCCEEECCCCceeeecC---------cccccCCCCEEECcCC-cccCcCCh--HHhcCcCCCEEECc
Confidence 433 25667889999999999987443333 2357899999999997 566 4443 34789999999999
Q ss_pred CCCCCcccCCCCCCCCCcceeEccC
Q 020667 245 DCPSMKIFSEGNSSTPKLHEVQWPG 269 (323)
Q Consensus 245 ~c~~l~~lp~~~~~~~~L~~L~l~~ 269 (323)
+|+..+.+|.. ..+++|+.+++.+
T Consensus 277 ~N~l~~~ip~~-~~l~~L~~l~l~~ 300 (313)
T 1ogq_A 277 FNNLCGEIPQG-GNLQRFDVSAYAN 300 (313)
T ss_dssp SSEEEEECCCS-TTGGGSCGGGTCS
T ss_pred CCcccccCCCC-ccccccChHHhcC
Confidence 98777789886 6888999999944
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.79 E-value=8.8e-18 Score=157.44 Aligned_cols=41 Identities=10% Similarity=0.157 Sum_probs=25.1
Q ss_pred ccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecC
Q 020667 16 TVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVEC 59 (323)
Q Consensus 16 ~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c 59 (323)
..+. .+++|++|+|++ +.++++.|.. ++++++|++|+++++
T Consensus 50 ~~~~-~l~~L~~L~L~~-n~i~~~~~~~-~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 50 DEFA-SFPHLEELELNE-NIVSAVEPGA-FNNLFNLRTLGLRSN 90 (477)
T ss_dssp TTTT-TCTTCCEEECTT-SCCCEECTTT-TTTCTTCCEEECCSS
T ss_pred hHcc-CCCCCCEEECCC-CccCEeChhh-hhCCccCCEEECCCC
Confidence 3455 667777777766 4566654443 566677777776643
No 8
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.78 E-value=9.3e-18 Score=156.17 Aligned_cols=44 Identities=14% Similarity=0.139 Sum_probs=25.8
Q ss_pred cccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCC
Q 020667 15 VTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECP 60 (323)
Q Consensus 15 p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~ 60 (323)
|..+. .+++|++|+++++ .+.+.++...+..+++|++|+++++.
T Consensus 47 ~~~~~-~l~~L~~L~L~~n-~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 47 ETSFS-RLQDLQFLKVEQQ-TPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp TTTTS-SCTTCCEEECCCC-STTCEECTTTTTTCTTCCEEECTTCT
T ss_pred hhHhc-cCccccEEECcCC-cccceECcccccccccCCEEeCCCCc
Confidence 44556 6777777777763 33322333335667777777776553
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.78 E-value=6.2e-18 Score=158.45 Aligned_cols=236 Identities=21% Similarity=0.229 Sum_probs=143.8
Q ss_pred ccccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCC-------------CceEEeeccc--cccCCCc
Q 020667 14 QVTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPV-------------LKELIVMDNQ--EERKNNN 78 (323)
Q Consensus 14 ~p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~-------------l~~l~~~~~~--~~~~~~~ 78 (323)
.|..+. .+++|++|+|++ +.++++ |...+..+++|++|+++++.. ++.+.+..+. +..+..+
T Consensus 72 ~~~~~~-~l~~L~~L~L~~-n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 148 (477)
T 2id5_A 72 EPGAFN-NLFNLRTLGLRS-NRLKLI-PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF 148 (477)
T ss_dssp CTTTTT-TCTTCCEEECCS-SCCCSC-CTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSS
T ss_pred Chhhhh-CCccCCEEECCC-CcCCcc-CcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhc
Confidence 366677 899999999998 678775 555467899999999986642 2222222221 1112223
Q ss_pred cccCCcCEEecccccccccccccCccccCCCCccEEEEcCCc------hhhhhccCCcceeeecCCCCccccCCCCCCCC
Q 020667 79 VMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCP------KFMERYNRTTNILTERGCDHLVDLVPSSTSFQ 152 (323)
Q Consensus 79 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp------~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~ 152 (323)
..+++|++|+++++ .+..++... ...+++|+.|++++|. ..+..+++|+.| .+.+|..++.+++......
T Consensus 149 ~~l~~L~~L~l~~n-~l~~~~~~~--l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L-~l~~~~~~~~~~~~~~~~~ 224 (477)
T 2id5_A 149 SGLNSLEQLTLEKC-NLTSIPTEA--LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL-EISHWPYLDTMTPNCLYGL 224 (477)
T ss_dssp TTCTTCCEEEEESC-CCSSCCHHH--HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEE-EEECCTTCCEECTTTTTTC
T ss_pred cCCCCCCEEECCCC-cCcccChhH--hcccCCCcEEeCCCCcCcEeChhhcccCccccee-eCCCCccccccCcccccCc
Confidence 34445555555444 233333211 1245555555555541 122334444554 4566666666666655566
Q ss_pred CCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCcc
Q 020667 153 NLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCA 232 (323)
Q Consensus 153 ~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~ 232 (323)
+|++|++++|. ++.++ ...+..+++|+.|++++|. +..++ ...+..+++|+.|++.++ +++.+.... +
T Consensus 225 ~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~-------~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~ 292 (477)
T 2id5_A 225 NLTSLSITHCN-LTAVP-YLAVRHLVYLRFLNLSYNP-ISTIE-------GSMLHELLRLQEIQLVGG-QLAVVEPYA-F 292 (477)
T ss_dssp CCSEEEEESSC-CCSCC-HHHHTTCTTCCEEECCSSC-CCEEC-------TTSCTTCTTCCEEECCSS-CCSEECTTT-B
T ss_pred cccEEECcCCc-ccccC-HHHhcCccccCeeECCCCc-CCccC-------hhhccccccCCEEECCCC-ccceECHHH-h
Confidence 77777777764 44442 2456778888888888765 44544 123457788888888885 677765543 4
Q ss_pred ccCCcccEEeecCCCCCcccCCC-CCCCCCcceeEccC
Q 020667 233 FKFPSLERLVLDDCPSMKIFSEG-NSSTPKLHEVQWPG 269 (323)
Q Consensus 233 ~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~L~~L~l~~ 269 (323)
..+++|++|++++| .++.+|.. +..+++|++|++.+
T Consensus 293 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 293 RGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDS 329 (477)
T ss_dssp TTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCS
T ss_pred cCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccC
Confidence 67888999999886 56666654 45778899998844
No 10
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.77 E-value=1.9e-17 Score=154.10 Aligned_cols=245 Identities=16% Similarity=0.210 Sum_probs=143.4
Q ss_pred cccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCC---------------CCceEEeeccc-ccc-CCC
Q 020667 15 VTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECP---------------VLKELIVMDNQ-EER-KNN 77 (323)
Q Consensus 15 p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~---------------~l~~l~~~~~~-~~~-~~~ 77 (323)
|..+. .+++|++|++++ +.++++.|.. ++.+++|++|++++|. +++.+.+..+. ... +..
T Consensus 72 ~~~~~-~l~~L~~L~Ls~-n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 148 (455)
T 3v47_A 72 NNTFR-GLSSLIILKLDY-NQFLQLETGA-FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148 (455)
T ss_dssp TTTTT-TCTTCCEEECTT-CTTCEECTTT-TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCG
T ss_pred ccccc-ccccCCEEeCCC-CccCccChhh-ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCccc
Confidence 44567 899999999998 5677765655 7889999999988653 23333333322 111 222
Q ss_pred -ccccCCcCEEecccccccccccccCc--------------------------------cccCCCCccEEEEcCCc----
Q 020667 78 -NVMFPQLQYLKMFNLENFTSFCTSNL--------------------------------GILEFPSLKELWISGCP---- 120 (323)
Q Consensus 78 -~~~l~~L~~L~l~~~~~l~~~~~~~~--------------------------------~~~~l~~L~~L~l~~cp---- 120 (323)
+..+++|++|+++++. +........ ....+++|++|++++|.
T Consensus 149 ~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 227 (455)
T 3v47_A 149 FFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES 227 (455)
T ss_dssp GGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHH
T ss_pred ccCCCCcccEEeCCCCc-ccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCccccc
Confidence 4566677777776653 222211100 00123566666666662
Q ss_pred --hhhhhc---------------------------------------cCCcceeeecCCCCccccCCCCCCCCCCCEEEe
Q 020667 121 --KFMERY---------------------------------------NRTTNILTERGCDHLVDLVPSSTSFQNLTNLVV 159 (323)
Q Consensus 121 --~~~~~l---------------------------------------~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l 159 (323)
..+... ++++.| ++.++...+..|..+..+++|++|++
T Consensus 228 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L-~l~~n~l~~~~~~~~~~l~~L~~L~L 306 (455)
T 3v47_A 228 MAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTC-DLSKSKIFALLKSVFSHFTDLEQLTL 306 (455)
T ss_dssp HHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEE-ECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred chhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEE-EecCccccccchhhcccCCCCCEEEC
Confidence 111111 123333 23333333334555667777888887
Q ss_pred ecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCccc
Q 020667 160 SCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLE 239 (323)
Q Consensus 160 ~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~ 239 (323)
++|. ++.+. +..+.++++|++|++++|. ++.++ ...+..+++|++|+++++ .++.+.... +..+++|+
T Consensus 307 s~n~-l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~-------~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~ 374 (455)
T 3v47_A 307 AQNE-INKID-DNAFWGLTHLLKLNLSQNF-LGSID-------SRMFENLDKLEVLDLSYN-HIRALGDQS-FLGLPNLK 374 (455)
T ss_dssp TTSC-CCEEC-TTTTTTCTTCCEEECCSSC-CCEEC-------GGGGTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCC
T ss_pred CCCc-ccccC-hhHhcCcccCCEEECCCCc-cCCcC-------hhHhcCcccCCEEECCCC-cccccChhh-cccccccc
Confidence 7775 34332 3456677778888887764 44443 133456788888888886 566664432 45678888
Q ss_pred EEeecCCCCCcccCCC-CCCCCCcceeEccCccccccccchh
Q 020667 240 RLVLDDCPSMKIFSEG-NSSTPKLHEVQWPGEARWAWKDDLN 280 (323)
Q Consensus 240 ~L~l~~c~~l~~lp~~-~~~~~~L~~L~l~~~~~~~~~~~l~ 280 (323)
+|++++| .++.+|.. +..+++|++|++ ..+.+.++.|
T Consensus 375 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~l---~~N~l~~~~~ 412 (455)
T 3v47_A 375 ELALDTN-QLKSVPDGIFDRLTSLQKIWL---HTNPWDCSCP 412 (455)
T ss_dssp EEECCSS-CCSCCCTTTTTTCTTCCEEEC---CSSCBCCCTT
T ss_pred EEECCCC-ccccCCHhHhccCCcccEEEc---cCCCcccCCC
Confidence 8888774 45566654 357788888888 5555555544
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.77 E-value=7.2e-18 Score=162.56 Aligned_cols=234 Identities=15% Similarity=0.061 Sum_probs=118.0
Q ss_pred ccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCC-------------CceEEeeccc--cccCC-Ccccc
Q 020667 18 MSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPV-------------LKELIVMDNQ--EERKN-NNVMF 81 (323)
Q Consensus 18 ~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~-------------l~~l~~~~~~--~~~~~-~~~~l 81 (323)
+. .+++|++|++++ +.++.+ |.+ ++.+++|++|+++++.. ++.+.+..+. +..+. .+..+
T Consensus 274 ~~-~l~~L~~L~l~~-n~l~~l-p~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 349 (606)
T 3t6q_A 274 FH-CFSGLQELDLTA-THLSEL-PSG-LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349 (606)
T ss_dssp TT-TCTTCSEEECTT-SCCSCC-CSS-CCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred hc-cccCCCEEeccC-CccCCC-Chh-hcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhcc
Confidence 55 677777777776 456653 544 56677777777765532 2222222111 11111 13345
Q ss_pred CCcCEEecccccccccccccCccccCCCCccEEEEcCC------chhhhhccCCcceeeecCCCCccccCCC-CCCCCCC
Q 020667 82 PQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGC------PKFMERYNRTTNILTERGCDHLVDLVPS-STSFQNL 154 (323)
Q Consensus 82 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c------p~~~~~l~~L~~L~~i~~~~~l~~l~~~-~~~l~~L 154 (323)
++|++|+++++. +............+++|++|++++| |..+..+++|+.| ++.++......++. +..+++|
T Consensus 350 ~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~~l~~L 427 (606)
T 3t6q_A 350 ENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL-DLAFTRLKVKDAQSPFQNLHLL 427 (606)
T ss_dssp TTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEE-ECTTCCEECCTTCCTTTTCTTC
T ss_pred CcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeE-ECCCCcCCCcccchhhhCcccC
Confidence 555555555542 2222100000234555666665555 2233334444444 34444333322222 4556666
Q ss_pred CEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCcccc
Q 020667 155 TNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFK 234 (323)
Q Consensus 155 ~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~ 234 (323)
++|++++|...... +..+..+++|++|++++|...+..+. ....+..+++|+.|++++| +++.++... +..
T Consensus 428 ~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~ 498 (606)
T 3t6q_A 428 KVLNLSHSLLDISS--EQLFDGLPALQHLNLQGNHFPKGNIQ-----KTNSLQTLGRLEILVLSFC-DLSSIDQHA-FTS 498 (606)
T ss_dssp CEEECTTCCCBTTC--TTTTTTCTTCCEEECTTCBCGGGEEC-----SSCGGGGCTTCCEEECTTS-CCCEECTTT-TTT
T ss_pred CEEECCCCccCCcC--HHHHhCCCCCCEEECCCCCCCccccc-----cchhhccCCCccEEECCCC-ccCccChhh-hcc
Confidence 66666665422211 33455666666666666653221110 0122356677777777775 555554332 355
Q ss_pred CCcccEEeecCCCCCcccCCCCCCCCCcceeEc
Q 020667 235 FPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQW 267 (323)
Q Consensus 235 l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l 267 (323)
+++|++|++++|...+..|..+..+++| .|++
T Consensus 499 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L 530 (606)
T 3t6q_A 499 LKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNL 530 (606)
T ss_dssp CTTCCEEECCSSCCCGGGGGGGTTCCSC-EEEC
T ss_pred ccCCCEEECCCCccCcCChhHhCccccc-EEEC
Confidence 6777777777765555556666667777 7777
No 12
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=1.1e-17 Score=147.80 Aligned_cols=222 Identities=13% Similarity=0.088 Sum_probs=162.9
Q ss_pred CCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEE-eeccccccCCCccccCCcCEEecccccccccccc
Q 020667 22 IQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELI-VMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCT 100 (323)
Q Consensus 22 l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 100 (323)
.++|++|++++ ++++.+ |..+++.+++|++|+++++. +..+. .+... ..+++|++|+++++ .+..++.
T Consensus 27 ~~~l~~L~L~~-n~l~~i-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~-------~~~~~L~~L~Ls~n-~i~~l~~ 95 (306)
T 2z66_A 27 PSSATRLELES-NKLQSL-PHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSD-------FGTTSLKYLDLSFN-GVITMSS 95 (306)
T ss_dssp CTTCCEEECCS-SCCCCC-CTTTTTTCTTCSEEECCSSC-CCEEEEEEHHH-------HSCSCCCEEECCSC-SEEEEEE
T ss_pred CCCCCEEECCC-CccCcc-CHhHhhccccCCEEECCCCc-cCcccCccccc-------ccccccCEEECCCC-ccccChh
Confidence 46899999998 578875 66657899999999999874 33221 11222 26889999999988 4666666
Q ss_pred cCccccCCCCccEEEEcCCc-------hhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhH
Q 020667 101 SNLGILEFPSLKELWISGCP-------KFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSI 173 (323)
Q Consensus 101 ~~~~~~~l~~L~~L~l~~cp-------~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 173 (323)
.. ..+++|++|++++|. ..+..+++|+.| .+.++......+..+..+++|++|++++|...... .+..
T Consensus 96 ~~---~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~ 170 (306)
T 2z66_A 96 NF---LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL-DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF-LPDI 170 (306)
T ss_dssp EE---ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEE-ECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE-ECSC
T ss_pred hc---CCCCCCCEEECCCCcccccccchhhhhccCCCEE-ECCCCcCCccchhhcccCcCCCEEECCCCcccccc-chhH
Confidence 53 479999999999982 244556677777 56666655555666788999999999988633311 1456
Q ss_pred HhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccC
Q 020667 174 AKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFS 253 (323)
Q Consensus 174 l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp 253 (323)
+..+++|++|++++|. +..++ ...+..+++|+.|+++++ .++.++... +..+++|++|++++|...+..|
T Consensus 171 ~~~l~~L~~L~Ls~n~-l~~~~-------~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 171 FTELRNLTFLDLSQCQ-LEQLS-------PTAFNSLSSLQVLNMSHN-NFFSLDTFP-YKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp CTTCTTCCEEECTTSC-CCEEC-------TTTTTTCTTCCEEECTTS-CCSBCCSGG-GTTCTTCCEEECTTSCCCBCSS
T ss_pred HhhCcCCCEEECCCCC-cCCcC-------HHHhcCCCCCCEEECCCC-ccCccChhh-ccCcccCCEeECCCCCCcccCH
Confidence 7889999999999985 55553 134467899999999996 677765533 4678999999999987666677
Q ss_pred CCCCCC-CCcceeEccC
Q 020667 254 EGNSST-PKLHEVQWPG 269 (323)
Q Consensus 254 ~~~~~~-~~L~~L~l~~ 269 (323)
..+..+ ++|++|++.+
T Consensus 241 ~~~~~~~~~L~~L~L~~ 257 (306)
T 2z66_A 241 QELQHFPSSLAFLNLTQ 257 (306)
T ss_dssp SSCCCCCTTCCEEECTT
T ss_pred HHHHhhhccCCEEEccC
Confidence 777777 4999999944
No 13
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=2.2e-17 Score=153.81 Aligned_cols=217 Identities=18% Similarity=0.211 Sum_probs=167.4
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccC
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSN 102 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 102 (323)
++|++|+|++ ++++++.|.. +..+++|++|+++++. +.. +. +..+..+++|++|+++++ .+..++...
T Consensus 75 ~~l~~L~L~~-n~i~~~~~~~-~~~l~~L~~L~Ls~n~-i~~--~~------~~~~~~l~~L~~L~L~~n-~l~~~~~~~ 142 (452)
T 3zyi_A 75 SNTRYLNLME-NNIQMIQADT-FRHLHHLEVLQLGRNS-IRQ--IE------VGAFNGLASLNTLELFDN-WLTVIPSGA 142 (452)
T ss_dssp TTCSEEECCS-SCCCEECTTT-TTTCTTCCEEECCSSC-CCE--EC------TTTTTTCTTCCEEECCSS-CCSBCCTTT
T ss_pred CCccEEECcC-CcCceECHHH-cCCCCCCCEEECCCCc-cCC--cC------hhhccCcccCCEEECCCC-cCCccChhh
Confidence 6899999998 6888875554 7899999999999874 442 22 122337899999999987 577776653
Q ss_pred ccccCCCCccEEEEcCCc------hhhhhccCCcceeeecCCCCccccCC-CCCCCCCCCEEEeecCcCcceecchhHHh
Q 020667 103 LGILEFPSLKELWISGCP------KFMERYNRTTNILTERGCDHLVDLVP-SSTSFQNLTNLVVSCCKGLKIVLTFSIAK 175 (323)
Q Consensus 103 ~~~~~l~~L~~L~l~~cp------~~~~~l~~L~~L~~i~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~l~ 175 (323)
+..+++|++|++++|. ..+..+++|+.| ++.+|..++.++. .+..+++|++|++++|. ++.++ .+.
T Consensus 143 --~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L-~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~---~~~ 215 (452)
T 3zyi_A 143 --FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL-DLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMP---NLT 215 (452)
T ss_dssp --SSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEE-ECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCC---CCT
T ss_pred --hcccCCCCEEECCCCCcceeCHhHHhcCCcccEE-eCCCCCCccccChhhccCCCCCCEEECCCCc-ccccc---ccc
Confidence 2578999999999982 345567777777 6888888888876 46789999999999985 55552 367
Q ss_pred ccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCC
Q 020667 176 TLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEG 255 (323)
Q Consensus 176 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~ 255 (323)
.+++|+.|++++|. +..++ ...+..+++|+.|++.++ .++.+.... +..+++|++|++++| .++.+|..
T Consensus 216 ~l~~L~~L~Ls~N~-l~~~~-------~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~ 284 (452)
T 3zyi_A 216 PLVGLEELEMSGNH-FPEIR-------PGSFHGLSSLKKLWVMNS-QVSLIERNA-FDGLASLVELNLAHN-NLSSLPHD 284 (452)
T ss_dssp TCTTCCEEECTTSC-CSEEC-------GGGGTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CCSCCCTT
T ss_pred ccccccEEECcCCc-CcccC-------cccccCccCCCEEEeCCC-cCceECHHH-hcCCCCCCEEECCCC-cCCccChH
Confidence 88999999999986 44443 144578899999999996 788776543 567899999999886 56677754
Q ss_pred -CCCCCCcceeEccC
Q 020667 256 -NSSTPKLHEVQWPG 269 (323)
Q Consensus 256 -~~~~~~L~~L~l~~ 269 (323)
+..+++|++|++.+
T Consensus 285 ~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 285 LFTPLRYLVELHLHH 299 (452)
T ss_dssp SSTTCTTCCEEECCS
T ss_pred HhccccCCCEEEccC
Confidence 45789999999955
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.77 E-value=8e-18 Score=163.29 Aligned_cols=214 Identities=12% Similarity=0.091 Sum_probs=144.5
Q ss_pred ccceeccchhHhcCCCccEEEEecCCCCceEEeecc---------ccccCCCcc--ccCCcCEEecccccccccccccCc
Q 020667 35 NLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDN---------QEERKNNNV--MFPQLQYLKMFNLENFTSFCTSNL 103 (323)
Q Consensus 35 ~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~---------~~~~~~~~~--~l~~L~~L~l~~~~~l~~~~~~~~ 103 (323)
++++ +|.. ++++++|++|+++++. +....+... .+..|..+. .+++|++|++++|...+.+|...
T Consensus 194 ~l~~-ip~~-l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l- 269 (636)
T 4eco_A 194 NITF-VSKA-VMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL- 269 (636)
T ss_dssp EEEE-ECGG-GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-
T ss_pred CCcc-CCHH-HhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH-
Confidence 4556 4665 7889999999999875 431000000 011667777 89999999999987677777663
Q ss_pred cccCCCCccEEEEcCCc--------hhhhhc------cCCcceeeecCCCCccccCC--CCCCCCCCCEEEeecCcCcce
Q 020667 104 GILEFPSLKELWISGCP--------KFMERY------NRTTNILTERGCDHLVDLVP--SSTSFQNLTNLVVSCCKGLKI 167 (323)
Q Consensus 104 ~~~~l~~L~~L~l~~cp--------~~~~~l------~~L~~L~~i~~~~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~ 167 (323)
..+++|++|++++|. ..++.+ ++|+.| .+.+|... .+|. .+..+++|++|++++|...+.
T Consensus 270 --~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L-~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ 345 (636)
T 4eco_A 270 --KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII-YIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGK 345 (636)
T ss_dssp --TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEE-ECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEE
T ss_pred --hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEE-ECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccc
Confidence 488999999999885 223333 677777 56666444 7887 788899999999998864436
Q ss_pred ecchhHHhccccccEEEEccCcccceeeeccCcccccccccccc-cCeeecccccccceecCCCccccCCcccEEeecCC
Q 020667 168 VLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRE-LKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDC 246 (323)
Q Consensus 168 l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~-L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c 246 (323)
+ + .+..+++|+.|++++|. +..+| ..+..+++ |++|+++++ .++.++.......+++|++|++++|
T Consensus 346 i--p-~~~~l~~L~~L~L~~N~-l~~lp--------~~l~~l~~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N 412 (636)
T 4eco_A 346 L--P-AFGSEIKLASLNLAYNQ-ITEIP--------ANFCGFTEQVENLSFAHN-KLKYIPNIFDAKSVSVMSAIDFSYN 412 (636)
T ss_dssp C--C-CCEEEEEESEEECCSSE-EEECC--------TTSEEECTTCCEEECCSS-CCSSCCSCCCTTCSSCEEEEECCSS
T ss_pred h--h-hhCCCCCCCEEECCCCc-ccccc--------HhhhhhcccCcEEEccCC-cCcccchhhhhcccCccCEEECcCC
Confidence 5 3 56788889999998875 44665 34567777 888888885 4666665332223446777777776
Q ss_pred CCCcccCCCCC-------CCCCcceeEccC
Q 020667 247 PSMKIFSEGNS-------STPKLHEVQWPG 269 (323)
Q Consensus 247 ~~l~~lp~~~~-------~~~~L~~L~l~~ 269 (323)
...+.+|..+. .+++|++|++.+
T Consensus 413 ~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~ 442 (636)
T 4eco_A 413 EIGSVDGKNFDPLDPTPFKGINVSSINLSN 442 (636)
T ss_dssp CTTTTTTCSSCTTCSSCCCCCCEEEEECCS
T ss_pred cCCCcchhhhcccccccccCCCCCEEECcC
Confidence 65555665554 556677776633
No 15
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=2.7e-17 Score=152.64 Aligned_cols=217 Identities=14% Similarity=0.247 Sum_probs=167.3
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccC
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSN 102 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 102 (323)
+++++|+|++ ++++++.+.. +..+++|++|+++++. +..+ .... +..+++|++|+++++ .+..++...
T Consensus 64 ~~l~~L~L~~-n~i~~~~~~~-~~~l~~L~~L~Ls~n~-i~~i-~~~~-------~~~l~~L~~L~L~~n-~l~~~~~~~ 131 (440)
T 3zyj_A 64 TNTRLLNLHE-NQIQIIKVNS-FKHLRHLEILQLSRNH-IRTI-EIGA-------FNGLANLNTLELFDN-RLTTIPNGA 131 (440)
T ss_dssp TTCSEEECCS-CCCCEECTTT-TSSCSSCCEEECCSSC-CCEE-CGGG-------GTTCSSCCEEECCSS-CCSSCCTTT
T ss_pred CCCcEEEccC-CcCCeeCHHH-hhCCCCCCEEECCCCc-CCcc-Chhh-------ccCCccCCEEECCCC-cCCeeCHhH
Confidence 7899999998 6788875544 7899999999999875 4421 1122 237899999999987 677776643
Q ss_pred ccccCCCCccEEEEcCCc------hhhhhccCCcceeeecCCCCccccCC-CCCCCCCCCEEEeecCcCcceecchhHHh
Q 020667 103 LGILEFPSLKELWISGCP------KFMERYNRTTNILTERGCDHLVDLVP-SSTSFQNLTNLVVSCCKGLKIVLTFSIAK 175 (323)
Q Consensus 103 ~~~~~l~~L~~L~l~~cp------~~~~~l~~L~~L~~i~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~l~ 175 (323)
+..+++|++|++++|. ..+..+++|+.| ++.++..+..++. .+..+++|++|++++|. ++.++ .+.
T Consensus 132 --~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L-~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~---~~~ 204 (440)
T 3zyj_A 132 --FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL-DLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIP---NLT 204 (440)
T ss_dssp --SCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEE-ECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCC---CCT
T ss_pred --hhccccCceeeCCCCcccccCHHHhhhCcccCEe-CCCCCCCcceeCcchhhcccccCeecCCCCc-Ccccc---ccC
Confidence 3578999999999982 345567777777 6888888888866 47789999999999984 66553 367
Q ss_pred ccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCC
Q 020667 176 TLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEG 255 (323)
Q Consensus 176 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~ 255 (323)
.+++|+.|++++|. +..++ ...+..+++|+.|++.++ +++.++... +..+++|++|++++| .++.+|..
T Consensus 205 ~l~~L~~L~Ls~N~-l~~~~-------~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~ 273 (440)
T 3zyj_A 205 PLIKLDELDLSGNH-LSAIR-------PGSFQGLMHLQKLWMIQS-QIQVIERNA-FDNLQSLVEINLAHN-NLTLLPHD 273 (440)
T ss_dssp TCSSCCEEECTTSC-CCEEC-------TTTTTTCTTCCEEECTTC-CCCEECTTS-STTCTTCCEEECTTS-CCCCCCTT
T ss_pred CCcccCEEECCCCc-cCccC-------hhhhccCccCCEEECCCC-ceeEEChhh-hcCCCCCCEEECCCC-CCCccChh
Confidence 88999999999985 55554 244568899999999996 788887654 567899999999886 56667654
Q ss_pred -CCCCCCcceeEccC
Q 020667 256 -NSSTPKLHEVQWPG 269 (323)
Q Consensus 256 -~~~~~~L~~L~l~~ 269 (323)
+..+++|+.|++.+
T Consensus 274 ~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 274 LFTPLHHLERIHLHH 288 (440)
T ss_dssp TTSSCTTCCEEECCS
T ss_pred HhccccCCCEEEcCC
Confidence 46789999999955
No 16
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.76 E-value=3e-17 Score=149.86 Aligned_cols=84 Identities=13% Similarity=0.161 Sum_probs=44.3
Q ss_pred HhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccC
Q 020667 174 AKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFS 253 (323)
Q Consensus 174 l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp 253 (323)
+..+++|++|++++|. +..++ ...+..+++|+.|+++++ +++.++... ..+++|++|++++| .++.+|
T Consensus 244 l~~l~~L~~L~Ls~n~-l~~~~-------~~~~~~l~~L~~L~L~~n-~l~~~~~~~--~~l~~L~~L~L~~n-~l~~~~ 311 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNE-LEKIM-------YHPFVKMQRLERLYISNN-RLVALNLYG--QPIPTLKVLDLSHN-HLLHVE 311 (390)
T ss_dssp GGGCTTCSEEECCSSC-CCEEE-------SGGGTTCSSCCEEECCSS-CCCEEECSS--SCCTTCCEEECCSS-CCCCCG
T ss_pred HcCCCCccEEECCCCc-CCCcC-------hhHccccccCCEEECCCC-cCcccCccc--CCCCCCCEEECCCC-cceecC
Confidence 4455556666655553 22222 123345566666666664 455554432 44566666666664 344555
Q ss_pred CCCCCCCCcceeEccC
Q 020667 254 EGNSSTPKLHEVQWPG 269 (323)
Q Consensus 254 ~~~~~~~~L~~L~l~~ 269 (323)
..+..+++|++|++.+
T Consensus 312 ~~~~~l~~L~~L~L~~ 327 (390)
T 3o6n_A 312 RNQPQFDRLENLYLDH 327 (390)
T ss_dssp GGHHHHTTCSEEECCS
T ss_pred ccccccCcCCEEECCC
Confidence 5554556666666633
No 17
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.76 E-value=2.5e-17 Score=158.83 Aligned_cols=238 Identities=17% Similarity=0.118 Sum_probs=167.8
Q ss_pred ccccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecC--------------CCCceEEeeccc--cc--cC
Q 020667 14 QVTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVEC--------------PVLKELIVMDNQ--EE--RK 75 (323)
Q Consensus 14 ~p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c--------------~~l~~l~~~~~~--~~--~~ 75 (323)
.|..+. .+++|++|++++ +.++++.|.. +..+++|++|+++++ +.++.+.+..+. +. .+
T Consensus 293 lp~~l~-~l~~L~~L~l~~-n~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 369 (606)
T 3t6q_A 293 LPSGLV-GLSTLKKLVLSA-NKFENLCQIS-ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369 (606)
T ss_dssp CCSSCC-SCTTCCEEECTT-CCCSBGGGGC-GGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEEST
T ss_pred CChhhc-ccccCCEEECcc-CCcCcCchhh-hhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcc
Confidence 455666 788888888887 4566654433 677788888877654 234444443332 11 14
Q ss_pred CCccccCCcCEEecccccccccccccCccccCCCCccEEEEcCCc-------hhhhhccCCcceeeecCCCCccccCCCC
Q 020667 76 NNNVMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCP-------KFMERYNRTTNILTERGCDHLVDLVPSS 148 (323)
Q Consensus 76 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp-------~~~~~l~~L~~L~~i~~~~~l~~l~~~~ 148 (323)
..+..+++|++|+++++. +..++... +..+++|++|++++|. ..+..+++|+.| .+.+|......|..+
T Consensus 370 ~~~~~l~~L~~L~l~~n~-l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~ 445 (606)
T 3t6q_A 370 LQLRNLSHLQSLNLSYNE-PLSLKTEA--FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL-NLSHSLLDISSEQLF 445 (606)
T ss_dssp TTTTTCTTCCEEECCSCS-CEEECTTT--TTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE-ECTTCCCBTTCTTTT
T ss_pred hhcccCCCCCEEECCCCc-CCcCCHHH--hcCCccCCeEECCCCcCCCcccchhhhCcccCCEE-ECCCCccCCcCHHHH
Confidence 456689999999999984 44444332 3578999999999983 235556777777 677776666666778
Q ss_pred CCCCCCCEEEeecCcCcce-ecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceec
Q 020667 149 TSFQNLTNLVVSCCKGLKI-VLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFC 227 (323)
Q Consensus 149 ~~l~~L~~L~l~~c~~l~~-l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~ 227 (323)
..+++|++|++++|..... ++.+..+..+++|+.|++++|. +..++ ...+..+++|++|+++++ +++.+.
T Consensus 446 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~-------~~~~~~l~~L~~L~Ls~N-~l~~~~ 516 (606)
T 3t6q_A 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSID-------QHAFTSLKMMNHVDLSHN-RLTSSS 516 (606)
T ss_dssp TTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCEEC-------TTTTTTCTTCCEEECCSS-CCCGGG
T ss_pred hCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc-cCccC-------hhhhccccCCCEEECCCC-ccCcCC
Confidence 8899999999999964332 2223467889999999999986 44443 144568899999999997 676665
Q ss_pred CCCccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEccC
Q 020667 228 SGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQWPG 269 (323)
Q Consensus 228 ~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~ 269 (323)
... +..+++| +|++++|...+..|..+..+++|+.+++.|
T Consensus 517 ~~~-l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 556 (606)
T 3t6q_A 517 IEA-LSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQ 556 (606)
T ss_dssp GGG-GTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTT
T ss_pred hhH-hCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCC
Confidence 433 4678899 999999765555555566789999999944
No 18
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.74 E-value=2.8e-17 Score=158.40 Aligned_cols=171 Identities=15% Similarity=0.047 Sum_probs=80.6
Q ss_pred ccCCcCEEecccccccccc---cccCccccCCCCccEEEEcCC-----chhhhhccCCcceeeecCCCCccccC-CCCCC
Q 020667 80 MFPQLQYLKMFNLENFTSF---CTSNLGILEFPSLKELWISGC-----PKFMERYNRTTNILTERGCDHLVDLV-PSSTS 150 (323)
Q Consensus 80 ~l~~L~~L~l~~~~~l~~~---~~~~~~~~~l~~L~~L~l~~c-----p~~~~~l~~L~~L~~i~~~~~l~~l~-~~~~~ 150 (323)
.+++|++|+++++. +... +.. ...+++|++|++++| |..+..+++|+.| .+.+|...+..+ ..+..
T Consensus 348 ~l~~L~~L~ls~n~-l~~~~~~~~~---~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~~ 422 (606)
T 3vq2_A 348 ALPSLSYLDLSRNA-LSFSGCCSYS---DLGTNSLRHLDLSFNGAIIMSANFMGLEELQHL-DFQHSTLKRVTEFSAFLS 422 (606)
T ss_dssp CCTTCCEEECCSSC-EEEEEECCHH---HHCCSCCCEEECCSCSEEEECCCCTTCTTCCEE-ECTTSEEESTTTTTTTTT
T ss_pred cCCCCCEEECcCCc-cCCCcchhhh---hccCCcccEeECCCCccccchhhccCCCCCCee-ECCCCccCCccChhhhhc
Confidence 56666666666552 3332 222 235566666666655 2223334444444 334433322222 23445
Q ss_pred CCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccce-eeeccCcccccccccccccCeeecccccccceecCC
Q 020667 151 FQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITE-IVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSG 229 (323)
Q Consensus 151 l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~-i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~ 229 (323)
+++|++|++++|...... +..+.++++|++|++++|...+. ++ ..+..+++|+.|+++++ .++.++..
T Consensus 423 l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~--------~~~~~l~~L~~L~Ls~n-~l~~~~~~ 491 (606)
T 3vq2_A 423 LEKLLYLDISYTNTKIDF--DGIFLGLTSLNTLKMAGNSFKDNTLS--------NVFANTTNLTFLDLSKC-QLEQISWG 491 (606)
T ss_dssp CTTCCEEECTTSCCEECC--TTTTTTCTTCCEEECTTCEEGGGEEC--------SCCTTCTTCCEEECTTS-CCCEECTT
T ss_pred cccCCEEECcCCCCCccc--hhhhcCCCCCCEEECCCCcCCCcchH--------HhhccCCCCCEEECCCC-cCCccChh
Confidence 556666666555422222 33445555666666655543322 22 22344555555555554 44444332
Q ss_pred CccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEc
Q 020667 230 NCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQW 267 (323)
Q Consensus 230 ~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l 267 (323)
. +..+++|++|++++|...+..|..+..+++|++|++
T Consensus 492 ~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 528 (606)
T 3vq2_A 492 V-FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528 (606)
T ss_dssp T-TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEEC
T ss_pred h-hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEEC
Confidence 1 234555555555555433333444555555555555
No 19
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.74 E-value=3.9e-17 Score=157.40 Aligned_cols=229 Identities=13% Similarity=0.098 Sum_probs=152.5
Q ss_pred ccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecC-----------CCCceEEeeccc-cc---cCCCccccC
Q 020667 18 MSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVEC-----------PVLKELIVMDNQ-EE---RKNNNVMFP 82 (323)
Q Consensus 18 ~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c-----------~~l~~l~~~~~~-~~---~~~~~~~l~ 82 (323)
+. .+++|++|++++|. ++. +|. + .+++|+.|+++++ +.++.+.+..+. .. .+..+..++
T Consensus 303 l~-~~~~L~~L~l~~n~-l~~-lp~--~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~ 376 (606)
T 3vq2_A 303 VP-KHFKWQSLSIIRCQ-LKQ-FPT--L-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTN 376 (606)
T ss_dssp CC-TTCCCSEEEEESCC-CSS-CCC--C-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCS
T ss_pred cc-ccccCCEEEccccc-Ccc-ccc--C-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCC
Confidence 44 55666677776643 343 353 3 6777777777665 345544444332 11 144455788
Q ss_pred CcCEEecccccccccccccCccccCCCCccEEEEcCCc-------hhhhhccCCcceeeecCCCCccccCCCCCCCCCCC
Q 020667 83 QLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCP-------KFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLT 155 (323)
Q Consensus 83 ~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp-------~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~ 155 (323)
+|++|+++++. +..++.. +..+++|++|++++|. ..+..+++|+.| ++.+|......|..+..+++|+
T Consensus 377 ~L~~L~L~~n~-l~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~l~~L~ 451 (606)
T 3vq2_A 377 SLRHLDLSFNG-AIIMSAN---FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL-DISYTNTKIDFDGIFLGLTSLN 451 (606)
T ss_dssp CCCEEECCSCS-EEEECCC---CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEE-ECTTSCCEECCTTTTTTCTTCC
T ss_pred cccEeECCCCc-cccchhh---ccCCCCCCeeECCCCccCCccChhhhhccccCCEE-ECcCCCCCccchhhhcCCCCCC
Confidence 88899888874 6666644 3478889999888882 344556677777 5777776666677778888899
Q ss_pred EEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccC
Q 020667 156 NLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKF 235 (323)
Q Consensus 156 ~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l 235 (323)
+|++++|...... .+..+..+++|+.|++++|. +..++ ...+..+++|++|+++++ +++.+.... +..+
T Consensus 452 ~L~l~~n~l~~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~-------~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l 520 (606)
T 3vq2_A 452 TLKMAGNSFKDNT-LSNVFANTTNLTFLDLSKCQ-LEQIS-------WGVFDTLHRLQLLNMSHN-NLLFLDSSH-YNQL 520 (606)
T ss_dssp EEECTTCEEGGGE-ECSCCTTCTTCCEEECTTSC-CCEEC-------TTTTTTCTTCCEEECCSS-CCSCEEGGG-TTTC
T ss_pred EEECCCCcCCCcc-hHHhhccCCCCCEEECCCCc-CCccC-------hhhhcccccCCEEECCCC-cCCCcCHHH-ccCC
Confidence 9998888533321 14456788889999988885 44443 133467888889998887 566654332 4668
Q ss_pred CcccEEeecCCCCCcccCCCCCCCC-CcceeEccC
Q 020667 236 PSLERLVLDDCPSMKIFSEGNSSTP-KLHEVQWPG 269 (323)
Q Consensus 236 ~~L~~L~l~~c~~l~~lp~~~~~~~-~L~~L~l~~ 269 (323)
++|++|++++|. ++.+|..+..++ +|+++++.+
T Consensus 521 ~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~ 554 (606)
T 3vq2_A 521 YSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTN 554 (606)
T ss_dssp TTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCS
T ss_pred CcCCEEECCCCc-CcccCHhHhhhcccCcEEEccC
Confidence 888899998864 668888776666 688888843
No 20
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=3e-17 Score=145.82 Aligned_cols=216 Identities=14% Similarity=0.108 Sum_probs=159.6
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCT 100 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 100 (323)
.+++|++|++++ ++++++.|.. +..+++|++|+++++..-. + .. +..+++|++|+++++ .+..++
T Consensus 32 ~~~~L~~L~L~~-n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~-~--~~--------~~~l~~L~~L~Ls~n-~l~~l~- 96 (317)
T 3o53_A 32 SAWNVKELDLSG-NPLSQISAAD-LAPFTKLELLNLSSNVLYE-T--LD--------LESLSTLRTLDLNNN-YVQELL- 96 (317)
T ss_dssp TGGGCSEEECTT-SCCCCCCHHH-HTTCTTCCEEECTTSCCEE-E--EE--------ETTCTTCCEEECCSS-EEEEEE-
T ss_pred cCCCCCEEECcC-CccCcCCHHH-hhCCCcCCEEECCCCcCCc-c--hh--------hhhcCCCCEEECcCC-cccccc-
Confidence 678999999999 6788864444 7899999999999885432 1 11 237899999999988 455544
Q ss_pred cCccccCCCCccEEEEcCCchh---hhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhcc
Q 020667 101 SNLGILEFPSLKELWISGCPKF---MERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTL 177 (323)
Q Consensus 101 ~~~~~~~l~~L~~L~l~~cp~~---~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l 177 (323)
..++|++|++++|.-. ...+++|+.| .+.++......+..+..+++|++|++++|. ++.+........+
T Consensus 97 ------~~~~L~~L~l~~n~l~~~~~~~~~~L~~L-~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l 168 (317)
T 3o53_A 97 ------VGPSIETLHAANNNISRVSCSRGQGKKNI-YLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASS 168 (317)
T ss_dssp ------ECTTCCEEECCSSCCSEEEECCCSSCEEE-ECCSSCCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGT
T ss_pred ------CCCCcCEEECCCCccCCcCccccCCCCEE-ECCCCCCCCccchhhhccCCCCEEECCCCC-CCcccHHHHhhcc
Confidence 3578999999988311 1224566666 455554433334467788999999999985 5554333344578
Q ss_pred ccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCC
Q 020667 178 VRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNS 257 (323)
Q Consensus 178 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~ 257 (323)
++|++|++++|. +..++. ...+++|++|+++++ +++.++.. +..+++|++|++++| .++.+|..+.
T Consensus 169 ~~L~~L~L~~N~-l~~~~~---------~~~l~~L~~L~Ls~N-~l~~l~~~--~~~l~~L~~L~L~~N-~l~~l~~~~~ 234 (317)
T 3o53_A 169 DTLEHLNLQYNF-IYDVKG---------QVVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNN-KLVLIEKALR 234 (317)
T ss_dssp TTCCEEECTTSC-CCEEEC---------CCCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTS-CCCEECTTCC
T ss_pred CcCCEEECCCCc-Cccccc---------ccccccCCEEECCCC-cCCcchhh--hcccCcccEEECcCC-cccchhhHhh
Confidence 999999999986 666651 135899999999996 78888765 467899999999886 6778999888
Q ss_pred CCCCcceeEccCccccccc
Q 020667 258 STPKLHEVQWPGEARWAWK 276 (323)
Q Consensus 258 ~~~~L~~L~l~~~~~~~~~ 276 (323)
.+++|+.|++ ..+.+.
T Consensus 235 ~l~~L~~L~l---~~N~~~ 250 (317)
T 3o53_A 235 FSQNLEHFDL---RGNGFH 250 (317)
T ss_dssp CCTTCCEEEC---TTCCCB
T ss_pred cCCCCCEEEc---cCCCcc
Confidence 9999999999 444444
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=7e-17 Score=155.59 Aligned_cols=98 Identities=12% Similarity=0.129 Sum_probs=57.8
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCT 100 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 100 (323)
.+++|++|++++ +.++++.|.. ++.+++|++|+++++. +. .+ .+..+..+++|++|+++++ .+..++.
T Consensus 73 ~l~~L~~L~L~~-n~l~~~~~~~-~~~l~~L~~L~L~~n~-l~--~~------~~~~~~~l~~L~~L~L~~n-~l~~l~~ 140 (597)
T 3oja_B 73 SFRQVELLNLND-LQIEEIDTYA-FAYAHTIQKLYMGFNA-IR--YL------PPHVFQNVPLLTVLVLERN-DLSSLPR 140 (597)
T ss_dssp HCCCCSEEECTT-SCCCEECTTT-TTTCTTCCEEECCSSC-CC--CC------CTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred cCCCCcEEECCC-CCCCCCChHH-hcCCCCCCEEECCCCc-CC--CC------CHHHHcCCCCCCEEEeeCC-CCCCCCH
Confidence 566666666666 4455553333 5566666666666653 22 11 1122346778888888876 4666665
Q ss_pred cCccccCCCCccEEEEcCC------chhhhhccCCcce
Q 020667 101 SNLGILEFPSLKELWISGC------PKFMERYNRTTNI 132 (323)
Q Consensus 101 ~~~~~~~l~~L~~L~l~~c------p~~~~~l~~L~~L 132 (323)
.. +..+++|++|++++| |..++.+++|+.|
T Consensus 141 ~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 176 (597)
T 3oja_B 141 GI--FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 176 (597)
T ss_dssp TT--TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred HH--hccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEE
Confidence 43 146788888888877 3344555556555
No 22
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.73 E-value=1.2e-16 Score=142.63 Aligned_cols=213 Identities=12% Similarity=0.107 Sum_probs=147.9
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccC
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSN 102 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 102 (323)
++|++|++++ ++++++.+ ..++.+++|++|+++++..-. + .+..+..+++|++|+++++ .++.++..
T Consensus 52 ~~l~~L~L~~-n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~---~------~~~~~~~l~~L~~L~Ls~n-~l~~l~~~- 118 (330)
T 1xku_A 52 PDTALLDLQN-NKITEIKD-GDFKNLKNLHTLILINNKISK---I------SPGAFAPLVKLERLYLSKN-QLKELPEK- 118 (330)
T ss_dssp TTCCEEECCS-SCCCCBCT-TTTTTCTTCCEEECCSSCCCC---B------CTTTTTTCTTCCEEECCSS-CCSBCCSS-
T ss_pred CCCeEEECCC-CcCCEeCh-hhhccCCCCCEEECCCCcCCe---e------CHHHhcCCCCCCEEECCCC-cCCccChh-
Confidence 6888899988 56777644 337788999999998774322 1 1223447888999999887 46666654
Q ss_pred ccccCCCCccEEEEcCC------chhhhhccCCcceeeecCCCCc--cccCCCCCCCCCCCEEEeecCcCcceecchhHH
Q 020667 103 LGILEFPSLKELWISGC------PKFMERYNRTTNILTERGCDHL--VDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIA 174 (323)
Q Consensus 103 ~~~~~l~~L~~L~l~~c------p~~~~~l~~L~~L~~i~~~~~l--~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l 174 (323)
.+++|++|++++| +..+..+++|+.| .+.++... +..+..+..+++|++|++++|. ++.++ ..
T Consensus 119 ----~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~--~~- 189 (330)
T 1xku_A 119 ----MPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIP--QG- 189 (330)
T ss_dssp ----CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEE-ECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCC--SS-
T ss_pred ----hcccccEEECCCCcccccCHhHhcCCccccEE-ECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCC--cc-
Confidence 3478899998888 2334556666666 45555432 2344556778889999998875 44442 21
Q ss_pred hccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCC
Q 020667 175 KTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSE 254 (323)
Q Consensus 175 ~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 254 (323)
..++|++|++++|. +..++ ...+..+++|+.|+++++ .++.++... +..+++|++|++++| .++.+|.
T Consensus 190 -~~~~L~~L~l~~n~-l~~~~-------~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~lp~ 257 (330)
T 1xku_A 190 -LPPSLTELHLDGNK-ITKVD-------AASLKGLNNLAKLGLSFN-SISAVDNGS-LANTPHLRELHLNNN-KLVKVPG 257 (330)
T ss_dssp -CCTTCSEEECTTSC-CCEEC-------TGGGTTCTTCCEEECCSS-CCCEECTTT-GGGSTTCCEEECCSS-CCSSCCT
T ss_pred -ccccCCEEECCCCc-CCccC-------HHHhcCCCCCCEEECCCC-cCceeChhh-ccCCCCCCEEECCCC-cCccCCh
Confidence 23788889988875 44443 134467889999999886 677776533 467889999999886 5668888
Q ss_pred CCCCCCCcceeEccC
Q 020667 255 GNSSTPKLHEVQWPG 269 (323)
Q Consensus 255 ~~~~~~~L~~L~l~~ 269 (323)
++..+++|++|++.+
T Consensus 258 ~l~~l~~L~~L~l~~ 272 (330)
T 1xku_A 258 GLADHKYIQVVYLHN 272 (330)
T ss_dssp TTTTCSSCCEEECCS
T ss_pred hhccCCCcCEEECCC
Confidence 888889999999944
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=2.5e-16 Score=156.66 Aligned_cols=235 Identities=13% Similarity=0.058 Sum_probs=137.6
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCC----------------------CCceEEeeccc-cccCC-
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECP----------------------VLKELIVMDNQ-EERKN- 76 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~----------------------~l~~l~~~~~~-~~~~~- 76 (323)
++++|++|+|++| .+.+.+|.. ++++++|+.|+++++. +++.+.+..+. ..++.
T Consensus 489 ~L~~L~~L~Ls~N-~l~~~iP~~-l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~ 566 (876)
T 4ecn_A 489 NLKDLTDVELYNC-PNMTQLPDF-LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS 566 (876)
T ss_dssp GCTTCCEEEEESC-TTCCSCCGG-GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCH
T ss_pred cCCCCCEEECcCC-CCCccChHH-HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCCh
Confidence 6888999999884 445556755 6888889999888876 55555555443 44555
Q ss_pred -CccccCCcCEEecccccccccccccCccccCCCCccEEEEcCC-----chhhhhccC-CcceeeecCCCCccccCCCCC
Q 020667 77 -NNVMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGC-----PKFMERYNR-TTNILTERGCDHLVDLVPSST 149 (323)
Q Consensus 77 -~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c-----p~~~~~l~~-L~~L~~i~~~~~l~~l~~~~~ 149 (323)
.+..+++|+.|+++++. +..+| . +..+++|+.|++++| |..+..+++ |+.| .+.+|. +..+|..+.
T Consensus 567 ~~l~~L~~L~~L~Ls~N~-l~~lp-~---~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L-~Ls~N~-L~~lp~~~~ 639 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNK-VRHLE-A---FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGL-GFSHNK-LKYIPNIFN 639 (876)
T ss_dssp HHHTTCTTCCEEECTTSC-CCBCC-C---CCTTSEESEEECCSSCCSCCCTTSCEECTTCCEE-ECCSSC-CCSCCSCCC
T ss_pred hhhhcCCCCCEEECCCCC-cccch-h---hcCCCcceEEECcCCccccchHHHhhccccCCEE-ECcCCC-CCcCchhhh
Confidence 57788888888888774 45666 3 346778888888777 334444555 5555 344443 224443322
Q ss_pred CC-------------------------------CCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeecc
Q 020667 150 SF-------------------------------QNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVD 198 (323)
Q Consensus 150 ~l-------------------------------~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~ 198 (323)
.+ ++|+.|++++|. ++.++ ...+..+++|+.|++++|. +..++...
T Consensus 640 ~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp-~~~~~~l~~L~~L~Ls~N~-L~~ip~~~ 716 (876)
T 4ecn_A 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFP-TELFATGSPISTIILSNNL-MTSIPENS 716 (876)
T ss_dssp TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSCC-HHHHHTTCCCSEEECCSCC-CSCCCTTS
T ss_pred ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc-CCccC-HHHHccCCCCCEEECCCCc-CCccChHH
Confidence 22 245555555553 33331 2233467788888887764 44555211
Q ss_pred CcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEccC
Q 020667 199 DVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQWPG 269 (323)
Q Consensus 199 ~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~ 269 (323)
-.........+++|+.|+++++ +++.++.......+++|+.|++++|. +..+|..+..+++|+.|++.+
T Consensus 717 ~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 717 LKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp SSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCC
T ss_pred hccccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCCC-CCccchhhhcCCCCCEEECCC
Confidence 0000000123347777777775 56666543211256777777776643 344666666667777777733
No 24
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.72 E-value=3.9e-17 Score=147.19 Aligned_cols=228 Identities=14% Similarity=0.165 Sum_probs=119.3
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccC
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSN 102 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 102 (323)
++|++|++++ ++++++ |...+..+++|++|+++++. +.. +. +..+..+++|++|+++++ .++.++...
T Consensus 52 ~~L~~L~l~~-n~i~~~-~~~~~~~l~~L~~L~L~~n~-l~~--~~------~~~~~~l~~L~~L~Ls~n-~l~~~~~~~ 119 (353)
T 2z80_A 52 EAVKSLDLSN-NRITYI-SNSDLQRCVNLQALVLTSNG-INT--IE------EDSFSSLGSLEHLDLSYN-YLSNLSSSW 119 (353)
T ss_dssp TTCCEEECTT-SCCCEE-CTTTTTTCTTCCEEECTTSC-CCE--EC------TTTTTTCTTCCEEECCSS-CCSSCCHHH
T ss_pred ccCcEEECCC-CcCccc-CHHHhccCCCCCEEECCCCc-cCc--cC------HhhcCCCCCCCEEECCCC-cCCcCCHhH
Confidence 4666777766 456664 33225666677777766652 331 11 111224556666666655 344444321
Q ss_pred ccccCCCCccEEEEcCCc-----h--hhhhccCCcceeeecCCCCccccC-CCCCCCCCCCEEEeecCcCcceecchhHH
Q 020667 103 LGILEFPSLKELWISGCP-----K--FMERYNRTTNILTERGCDHLVDLV-PSSTSFQNLTNLVVSCCKGLKIVLTFSIA 174 (323)
Q Consensus 103 ~~~~~l~~L~~L~l~~cp-----~--~~~~l~~L~~L~~i~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~l 174 (323)
+..+++|++|++++|. . .+..+++|+.| .+.++..++.++ ..+..+++|++|++++|. ++... +..+
T Consensus 120 --~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L-~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~l 194 (353)
T 2z80_A 120 --FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL-RVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYE-PKSL 194 (353)
T ss_dssp --HTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEE-EEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEEC-TTTT
T ss_pred --hCCCccCCEEECCCCCCcccCchhhhccCCCCcEE-ECCCCccccccCHHHccCCCCCCEEECCCCC-cCccC-HHHH
Confidence 1245566666666551 1 23334444444 344444444442 234455556666665554 22221 3344
Q ss_pred hccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCC-------------------------
Q 020667 175 KTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSG------------------------- 229 (323)
Q Consensus 175 ~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~------------------------- 229 (323)
..+++|++|++++|. ++.++. ..+..+++|+.|+++++ .++.++..
T Consensus 195 ~~l~~L~~L~l~~n~-l~~~~~-------~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~ 265 (353)
T 2z80_A 195 KSIQNVSHLILHMKQ-HILLLE-------IFVDVTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265 (353)
T ss_dssp TTCSEEEEEEEECSC-STTHHH-------HHHHHTTTEEEEEEESC-BCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred hccccCCeecCCCCc-cccchh-------hhhhhcccccEEECCCC-ccccccccccccccccchhhccccccccccCcc
Confidence 555555555555544 233320 01123455555555543 22222110
Q ss_pred -----CccccCCcccEEeecCCCCCcccCCCC-CCCCCcceeEccCccccccccchh
Q 020667 230 -----NCAFKFPSLERLVLDDCPSMKIFSEGN-SSTPKLHEVQWPGEARWAWKDDLN 280 (323)
Q Consensus 230 -----~~~~~l~~L~~L~l~~c~~l~~lp~~~-~~~~~L~~L~l~~~~~~~~~~~l~ 280 (323)
.....+++|++|++++| .++.+|.++ ..+++|++|++ ..+.+.++.+
T Consensus 266 l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L---~~N~~~~~~~ 318 (353)
T 2z80_A 266 LFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWL---HTNPWDCSCP 318 (353)
T ss_dssp HHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC---CSSCBCCCHH
T ss_pred hhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEe---eCCCccCcCC
Confidence 01346889999999886 677899885 68999999999 5566666543
No 25
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.72 E-value=1.8e-16 Score=151.43 Aligned_cols=242 Identities=18% Similarity=0.154 Sum_probs=149.8
Q ss_pred ccccccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCC----------CCceEEeeccccccCCCcccc
Q 020667 12 LSQVTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECP----------VLKELIVMDNQEERKNNNVMF 81 (323)
Q Consensus 12 ~~~p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~----------~l~~l~~~~~~~~~~~~~~~l 81 (323)
...|..+. .+++|++|+++++ .++++ |.. +..+ +|++|++++|. .++.+.+..+..........+
T Consensus 272 ~~~~~~~~-~l~~L~~L~l~~~-~l~~l-~~~-~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (570)
T 2z63_A 272 DDIIDLFN-CLTNVSSFSLVSV-TIERV-KDF-SYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 346 (570)
T ss_dssp SCSTTTTG-GGTTCSEEEEESC-EECSC-CBC-CSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBC
T ss_pred hhchhhhc-CcCcccEEEecCc-cchhh-hhh-hccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccC
Confidence 33455666 8899999999984 56664 655 4566 88888888653 333333333221111111466
Q ss_pred CCcCEEecccccccccc---cccCccccCCCCccEEEEcCCc-----hhhhhccCCcceeeecCCCCccccC-CCCCCCC
Q 020667 82 PQLQYLKMFNLENFTSF---CTSNLGILEFPSLKELWISGCP-----KFMERYNRTTNILTERGCDHLVDLV-PSSTSFQ 152 (323)
Q Consensus 82 ~~L~~L~l~~~~~l~~~---~~~~~~~~~l~~L~~L~l~~cp-----~~~~~l~~L~~L~~i~~~~~l~~l~-~~~~~l~ 152 (323)
++|++|+++++. +... +.. ...+++|++|++++|. ..+..+++|+.| .+.+|......+ ..+..++
T Consensus 347 ~~L~~L~l~~n~-l~~~~~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~~l~ 421 (570)
T 2z63_A 347 PSLEFLDLSRNG-LSFKGCCSQS---DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL-DFQHSNLKQMSEFSVFLSLR 421 (570)
T ss_dssp TTCCEEECCSSC-CBEEEEEEHH---HHTCSCCCEEECCSCSEEEEEEEEETCTTCCEE-ECTTSEEESCTTSCTTTTCT
T ss_pred CCCCEEeCcCCc-cCcccccccc---ccccCccCEEECCCCccccccccccccCCCCEE-EccCCccccccchhhhhcCC
Confidence 777777777663 3332 222 2367777777777772 223445555555 445443333222 2456778
Q ss_pred CCCEEEeecCcCcceecchhHHhccccccEEEEccCccc-ceeeeccCcccccccccccccCeeecccccccceecCCCc
Q 020667 153 NLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRI-TEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNC 231 (323)
Q Consensus 153 ~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l-~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~ 231 (323)
+|++|++++|...... +..+.++++|+.|++++|... +.++ ..+..+++|+.|++++| +++.+....
T Consensus 422 ~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~p--------~~~~~l~~L~~L~l~~n-~l~~~~~~~- 489 (570)
T 2z63_A 422 NLIYLDISHTHTRVAF--NGIFNGLSSLEVLKMAGNSFQENFLP--------DIFTELRNLTFLDLSQC-QLEQLSPTA- 489 (570)
T ss_dssp TCCEEECTTSCCEECC--TTTTTTCTTCCEEECTTCEEGGGEEC--------SCCTTCTTCCEEECTTS-CCCEECTTT-
T ss_pred CCCEEeCcCCcccccc--hhhhhcCCcCcEEECcCCcCccccch--------hhhhcccCCCEEECCCC-ccccCChhh-
Confidence 8888888888533332 445677888888888888644 2344 34467888999999887 677664432
Q ss_pred cccCCcccEEeecCCCCCcccC-CCCCCCCCcceeEccCccccccccch
Q 020667 232 AFKFPSLERLVLDDCPSMKIFS-EGNSSTPKLHEVQWPGEARWAWKDDL 279 (323)
Q Consensus 232 ~~~l~~L~~L~l~~c~~l~~lp-~~~~~~~~L~~L~l~~~~~~~~~~~l 279 (323)
+..+++|++|++++|. ++.+| ..+..+++|++|++ ..+.+.++.
T Consensus 490 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l---~~N~~~~~~ 534 (570)
T 2z63_A 490 FNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWL---HTNPWDCSC 534 (570)
T ss_dssp TTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEEC---CSSCBCCCT
T ss_pred hhcccCCCEEeCCCCc-CCCCCHHHhhcccCCcEEEe---cCCcccCCC
Confidence 4578889999998874 44444 45667889999998 445555543
No 26
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.72 E-value=7.8e-17 Score=151.45 Aligned_cols=212 Identities=15% Similarity=0.120 Sum_probs=159.0
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCT 100 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 100 (323)
.+++|++|+|++ +.++++.|.. ++.+++|++|++++|..-. . .. +..+++|++|+++++ .+..++
T Consensus 32 ~~~~L~~L~Ls~-n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~-~--~~--------l~~l~~L~~L~Ls~N-~l~~l~- 96 (487)
T 3oja_A 32 SAWNVKELDLSG-NPLSQISAAD-LAPFTKLELLNLSSNVLYE-T--LD--------LESLSTLRTLDLNNN-YVQELL- 96 (487)
T ss_dssp TGGGCCEEECCS-SCCCCCCGGG-GTTCTTCCEEECTTSCCEE-E--EE--------CTTCTTCCEEECCSS-EEEEEE-
T ss_pred cCCCccEEEeeC-CcCCCCCHHH-HhCCCCCCEEEeeCCCCCC-C--cc--------cccCCCCCEEEecCC-cCCCCC-
Confidence 345999999999 6788865544 7899999999999885332 1 11 237899999999988 466554
Q ss_pred cCccccCCCCccEEEEcCCchh---hhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhcc
Q 020667 101 SNLGILEFPSLKELWISGCPKF---MERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTL 177 (323)
Q Consensus 101 ~~~~~~~l~~L~~L~l~~cp~~---~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l 177 (323)
..++|++|++++|.-. ...+++|+.| .+.+|...+..|..+..+++|++|++++|. ++...+......+
T Consensus 97 ------~~~~L~~L~L~~N~l~~~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l 168 (487)
T 3oja_A 97 ------VGPSIETLHAANNNISRVSCSRGQGKKNI-YLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASS 168 (487)
T ss_dssp ------ECTTCCEEECCSSCCCCEEECCCSSCEEE-ECCSSCCCSGGGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGT
T ss_pred ------CCCCcCEEECcCCcCCCCCccccCCCCEE-ECCCCCCCCCCchhhcCCCCCCEEECCCCC-CCCcChHHHhhhC
Confidence 3478999999998311 1235566666 566665555456677889999999999985 5544323333478
Q ss_pred ccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCC
Q 020667 178 VRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNS 257 (323)
Q Consensus 178 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~ 257 (323)
++|+.|++++|. +..++. ...+++|+.|+++++ .++.++.. +..+++|+.|++++| .+..+|..+.
T Consensus 169 ~~L~~L~Ls~N~-l~~~~~---------~~~l~~L~~L~Ls~N-~l~~~~~~--~~~l~~L~~L~Ls~N-~l~~lp~~l~ 234 (487)
T 3oja_A 169 DTLEHLNLQYNF-IYDVKG---------QVVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNN-KLVLIEKALR 234 (487)
T ss_dssp TTCCEEECTTSC-CCEEEC---------CCCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTS-CCCEECTTCC
T ss_pred CcccEEecCCCc-cccccc---------cccCCCCCEEECCCC-CCCCCCHh--HcCCCCccEEEecCC-cCcccchhhc
Confidence 999999999987 555541 136899999999996 78888765 468899999999885 5667999888
Q ss_pred CCCCcceeEccC
Q 020667 258 STPKLHEVQWPG 269 (323)
Q Consensus 258 ~~~~L~~L~l~~ 269 (323)
.+++|+.|++.+
T Consensus 235 ~l~~L~~L~l~~ 246 (487)
T 3oja_A 235 FSQNLEHFDLRG 246 (487)
T ss_dssp CCTTCCEEECTT
T ss_pred cCCCCCEEEcCC
Confidence 899999999944
No 27
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.71 E-value=1.4e-17 Score=161.66 Aligned_cols=235 Identities=10% Similarity=0.047 Sum_probs=151.9
Q ss_pred ccccccccCCcccEEeeeccccccee-----------------ccchhHh--cCCCccEEEEecCCCCceEEeecccccc
Q 020667 14 QVTVMSCGIQNLMHLTLRSCMNLRYL-----------------FSSSIVS--SFVRLQRIEIVECPVLKELIVMDNQEER 74 (323)
Q Consensus 14 ~p~~~~~~l~~L~~L~L~~c~~l~~~-----------------~p~~~~~--~l~~L~~L~ls~c~~l~~l~~~~~~~~~ 74 (323)
.|.+++ ++++|++|++++ +.+++. +|.. ++ ++++|++|++++|.... ..
T Consensus 198 ip~~l~-~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~---------~~ 265 (636)
T 4eco_A 198 VSKAVM-RLTKLRQFYMGN-SPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLT---------KL 265 (636)
T ss_dssp ECGGGG-GCTTCCEEEEES-CCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCS---------SC
T ss_pred CCHHHh-cccCCCEEECcC-CccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCc---------cC
Confidence 688899 999999999999 568883 4766 67 89999999999986554 23
Q ss_pred CCCccccCCcCEEeccccccccc--ccccCc---cccCCCCccEEEEcCC-----ch--hhhhccCCcceeeecCCCCcc
Q 020667 75 KNNNVMFPQLQYLKMFNLENFTS--FCTSNL---GILEFPSLKELWISGC-----PK--FMERYNRTTNILTERGCDHLV 142 (323)
Q Consensus 75 ~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~---~~~~l~~L~~L~l~~c-----p~--~~~~l~~L~~L~~i~~~~~l~ 142 (323)
|..+..+++|++|+++++..+.+ +|.... ....+++|++|++++| |. .++.+++|+.| .+.++...+
T Consensus 266 p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L-~L~~N~l~g 344 (636)
T 4eco_A 266 PTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGML-ECLYNQLEG 344 (636)
T ss_dssp CTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEE-ECCSCCCEE
T ss_pred hHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEE-eCcCCcCcc
Confidence 34445888999999998863553 554422 0012388889988888 44 56667777777 566666555
Q ss_pred ccCCCCCCCCCCCEEEeecCcCcceecchhHHhcccc-ccEEEEccCcccceeeeccCc---------------c---cc
Q 020667 143 DLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVR-LEYMEIESCDRITEIVLVDDV---------------A---AK 203 (323)
Q Consensus 143 ~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~-L~~L~l~~c~~l~~i~~~~~~---------------~---~~ 203 (323)
.+| .+..+++|++|++++|. ++.+ +..+..+++ |++|++++|. +..+|..-.. . ..
T Consensus 345 ~ip-~~~~l~~L~~L~L~~N~-l~~l--p~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p 419 (636)
T 4eco_A 345 KLP-AFGSEIKLASLNLAYNQ-ITEI--PANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419 (636)
T ss_dssp ECC-CCEEEEEESEEECCSSE-EEEC--CTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred chh-hhCCCCCCCEEECCCCc-cccc--cHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCCcch
Confidence 777 67777888888888774 4444 445677777 8888887765 3355421000 0 00
Q ss_pred cccc-------cccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCCCC--------CCcceeEcc
Q 020667 204 DEVI-------TFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSST--------PKLHEVQWP 268 (323)
Q Consensus 204 ~~~~-------~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~--------~~L~~L~l~ 268 (323)
..+. .+++|+.|+++++ .++.++... ...+++|++|++++|. ++.+|...... ++|++|++.
T Consensus 420 ~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~-~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls 496 (636)
T 4eco_A 420 KNFDPLDPTPFKGINVSSINLSNN-QISKFPKEL-FSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLR 496 (636)
T ss_dssp CSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHH-HHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECC
T ss_pred hhhcccccccccCCCCCEEECcCC-ccCcCCHHH-HccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECc
Confidence 1111 3346666666664 455554422 2346777778877753 44677654332 277888773
Q ss_pred C
Q 020667 269 G 269 (323)
Q Consensus 269 ~ 269 (323)
+
T Consensus 497 ~ 497 (636)
T 4eco_A 497 F 497 (636)
T ss_dssp S
T ss_pred C
Confidence 3
No 28
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.71 E-value=1e-16 Score=152.60 Aligned_cols=81 Identities=14% Similarity=0.154 Sum_probs=48.0
Q ss_pred cccccCeeecccccccceecC-CCccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEccCccccccccchhhhceee
Q 020667 208 TFRELKELKLLNLESLTSFCS-GNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQWPGEARWAWKDDLNTTIQKV 286 (323)
Q Consensus 208 ~~~~L~~L~l~~c~~L~~l~~-~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~~~~~~~~~~l~~~l~~l 286 (323)
.+++|+.|+++++ +++.++. +.....+++|++|++++| .++.+|..+..+++|++|++.++.-..+.+.+++.++.+
T Consensus 359 ~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L 436 (549)
T 2z81_A 359 AWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVL 436 (549)
T ss_dssp SSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEE
T ss_pred ccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-CCccCChhhcccccccEEECCCCCcccccchhcCCceEE
Confidence 3455555555553 3444331 011356788888888886 566888888788889998885543223334444555555
Q ss_pred eccc
Q 020667 287 IFPA 290 (323)
Q Consensus 287 ~~~~ 290 (323)
.+.+
T Consensus 437 ~Ls~ 440 (549)
T 2z81_A 437 DVSN 440 (549)
T ss_dssp ECCS
T ss_pred ECCC
Confidence 5443
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.71 E-value=2.3e-16 Score=141.55 Aligned_cols=144 Identities=12% Similarity=0.195 Sum_probs=80.5
Q ss_pred ccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccccc
Q 020667 18 MSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTS 97 (323)
Q Consensus 18 ~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 97 (323)
+. .+++|++|++++ +.++++ |. +..+++|++|+++++.. .. ++. +..+++|++|++++|.....
T Consensus 84 ~~-~l~~L~~L~L~~-n~i~~~-~~--~~~l~~L~~L~l~~n~i-~~--~~~--------~~~l~~L~~L~l~~n~~~~~ 147 (347)
T 4fmz_A 84 LS-NLVKLTNLYIGT-NKITDI-SA--LQNLTNLRELYLNEDNI-SD--ISP--------LANLTKMYSLNLGANHNLSD 147 (347)
T ss_dssp GT-TCTTCCEEECCS-SCCCCC-GG--GTTCTTCSEEECTTSCC-CC--CGG--------GTTCTTCCEEECTTCTTCCC
T ss_pred hh-cCCcCCEEEccC-CcccCc-hH--HcCCCcCCEEECcCCcc-cC--chh--------hccCCceeEEECCCCCCccc
Confidence 66 899999999998 467764 54 78899999999987642 21 111 23567777777777655554
Q ss_pred ccccCccccCCCCccEEEEcCCch----hhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhH
Q 020667 98 FCTSNLGILEFPSLKELWISGCPK----FMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSI 173 (323)
Q Consensus 98 ~~~~~~~~~~l~~L~~L~l~~cp~----~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 173 (323)
++.. ..+++|++|++++|.- .+..+++|+.| ++.+|. +..++. +..+++|+.|++++|. +.... .
T Consensus 148 ~~~~----~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L-~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~--~- 216 (347)
T 4fmz_A 148 LSPL----SNMTGLNYLTVTESKVKDVTPIANLTDLYSL-SLNYNQ-IEDISP-LASLTSLHYFTAYVNQ-ITDIT--P- 216 (347)
T ss_dssp CGGG----TTCTTCCEEECCSSCCCCCGGGGGCTTCSEE-ECTTSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCG--G-
T ss_pred ccch----hhCCCCcEEEecCCCcCCchhhccCCCCCEE-EccCCc-cccccc-ccCCCccceeecccCC-CCCCc--h-
Confidence 4431 3566666666666621 13334444444 333332 233322 4445555555555542 22221 1
Q ss_pred HhccccccEEEEccC
Q 020667 174 AKTLVRLEYMEIESC 188 (323)
Q Consensus 174 l~~l~~L~~L~l~~c 188 (323)
+..+++|++|++++|
T Consensus 217 ~~~~~~L~~L~l~~n 231 (347)
T 4fmz_A 217 VANMTRLNSLKIGNN 231 (347)
T ss_dssp GGGCTTCCEEECCSS
T ss_pred hhcCCcCCEEEccCC
Confidence 344555555555554
No 30
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=4.7e-16 Score=132.32 Aligned_cols=200 Identities=16% Similarity=0.081 Sum_probs=148.2
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccC
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSN 102 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 102 (323)
++|++|++++ ++++++ |...++.+++|++|+++++..++ .++.. .+..+++|++|++++|..++.++...
T Consensus 31 ~~l~~L~l~~-n~l~~i-~~~~~~~l~~L~~L~l~~n~~l~--~i~~~------~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 31 PSTQTLKLIE-THLRTI-PSHAFSNLPNISRIYVSIDVTLQ--QLESH------SFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp TTCCEEEEES-CCCSEE-CTTTTTTCTTCCEEEEECCSSCC--EECTT------TEESCTTCCEEEEEEETTCCEECTTS
T ss_pred CcccEEEEeC-CcceEE-CHHHccCCCCCcEEeCCCCCCcc--eeCHh------HcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 4899999998 678887 44447889999999999987676 33321 12378999999999866788877553
Q ss_pred ccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCC---EEEeecCcCcceecchhHHhcccc
Q 020667 103 LGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLT---NLVVSCCKGLKIVLTFSIAKTLVR 179 (323)
Q Consensus 103 ~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~---~L~l~~c~~l~~l~~~~~l~~l~~ 179 (323)
+..+++|++|++++|. +..+|. +..+++|+ +|++++|..++.++ +..+.++++
T Consensus 101 --f~~l~~L~~L~l~~n~--------------------l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~-~~~~~~l~~ 156 (239)
T 2xwt_C 101 --LKELPLLKFLGIFNTG--------------------LKMFPD-LTKVYSTDIFFILEITDNPYMTSIP-VNAFQGLCN 156 (239)
T ss_dssp --EECCTTCCEEEEEEEC--------------------CCSCCC-CTTCCBCCSEEEEEEESCTTCCEEC-TTTTTTTBS
T ss_pred --hCCCCCCCEEeCCCCC--------------------Cccccc-cccccccccccEEECCCCcchhhcC-cccccchhc
Confidence 3578999999998862 112222 45566666 99999986677764 335778999
Q ss_pred cc-EEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccC-CcccEEeecCCCCCcccCCCCC
Q 020667 180 LE-YMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKF-PSLERLVLDDCPSMKIFSEGNS 257 (323)
Q Consensus 180 L~-~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l-~~L~~L~l~~c~~l~~lp~~~~ 257 (323)
|+ .|+++++. ++.++. .....++|+.|++.+++.++.++... +..+ ++|++|++++ +.++.+|..
T Consensus 157 L~~~L~l~~n~-l~~i~~--------~~~~~~~L~~L~L~~n~~l~~i~~~~-~~~l~~~L~~L~l~~-N~l~~l~~~-- 223 (239)
T 2xwt_C 157 ETLTLKLYNNG-FTSVQG--------YAFNGTKLDAVYLNKNKYLTVIDKDA-FGGVYSGPSLLDVSQ-TSVTALPSK-- 223 (239)
T ss_dssp SEEEEECCSCC-CCEECT--------TTTTTCEEEEEECTTCTTCCEECTTT-TTTCSBCCSEEECTT-CCCCCCCCT--
T ss_pred ceeEEEcCCCC-CcccCH--------hhcCCCCCCEEEcCCCCCcccCCHHH-hhccccCCcEEECCC-CccccCChh--
Confidence 99 99998875 557762 11233789999999986798887654 4567 8999999988 567788875
Q ss_pred CCCCcceeEccC
Q 020667 258 STPKLHEVQWPG 269 (323)
Q Consensus 258 ~~~~L~~L~l~~ 269 (323)
.+++|+.|++.+
T Consensus 224 ~~~~L~~L~l~~ 235 (239)
T 2xwt_C 224 GLEHLKELIARN 235 (239)
T ss_dssp TCTTCSEEECTT
T ss_pred HhccCceeeccC
Confidence 678999998844
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.71 E-value=1.6e-16 Score=145.02 Aligned_cols=111 Identities=19% Similarity=0.210 Sum_probs=84.6
Q ss_pred CCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeeccccccccee
Q 020667 147 SSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSF 226 (323)
Q Consensus 147 ~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l 226 (323)
.+..+++|++|++++|. ++.+. +..+..+++|++|++++|. +..++ .....+++|++|+++++ .++.+
T Consensus 243 ~l~~l~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~--------~~~~~l~~L~~L~L~~n-~l~~~ 310 (390)
T 3o6n_A 243 WLLNYPGLVEVDLSYNE-LEKIM-YHPFVKMQRLERLYISNNR-LVALN--------LYGQPIPTLKVLDLSHN-HLLHV 310 (390)
T ss_dssp GGGGCTTCSEEECCSSC-CCEEE-SGGGTTCSSCCEEECCSSC-CCEEE--------CSSSCCTTCCEEECCSS-CCCCC
T ss_pred HHcCCCCccEEECCCCc-CCCcC-hhHccccccCCEEECCCCc-CcccC--------cccCCCCCCCEEECCCC-cceec
Confidence 35667889999999885 44432 4567889999999999975 66666 23357899999999997 78877
Q ss_pred cCCCccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEccCcccccccc
Q 020667 227 CSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQWPGEARWAWKD 277 (323)
Q Consensus 227 ~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~~~~~~~~~ 277 (323)
+.. ...+++|++|++++|+ ++.+| +..+++|++|++ ..+.+.+
T Consensus 311 ~~~--~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l---~~N~~~~ 353 (390)
T 3o6n_A 311 ERN--QPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTL---SHNDWDC 353 (390)
T ss_dssp GGG--HHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEEC---CSSCEEH
T ss_pred Ccc--ccccCcCCEEECCCCc-cceeC--chhhccCCEEEc---CCCCccc
Confidence 754 3678999999999865 66666 557899999999 4444444
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=1.4e-16 Score=153.55 Aligned_cols=90 Identities=18% Similarity=0.146 Sum_probs=61.1
Q ss_pred cccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccc
Q 020667 15 VTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLEN 94 (323)
Q Consensus 15 p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 94 (323)
|..+. .+++|++|+|++ +.++++.| ..++.+++|++|+++++. +. .++.. .+..+++|++|+++++ .
T Consensus 92 ~~~~~-~l~~L~~L~L~~-n~l~~~~~-~~~~~l~~L~~L~L~~n~-l~--~l~~~------~~~~l~~L~~L~Ls~N-~ 158 (597)
T 3oja_B 92 TYAFA-YAHTIQKLYMGF-NAIRYLPP-HVFQNVPLLTVLVLERND-LS--SLPRG------IFHNTPKLTTLSMSNN-N 158 (597)
T ss_dssp TTTTT-TCTTCCEEECCS-SCCCCCCT-TTTTTCTTCCEEECCSSC-CC--CCCTT------TTTTCTTCCEEECCSS-C
T ss_pred hHHhc-CCCCCCEEECCC-CcCCCCCH-HHHcCCCCCCEEEeeCCC-CC--CCCHH------HhccCCCCCEEEeeCC-c
Confidence 34566 888888888888 56777644 436788888888888774 33 22211 1236888888888887 4
Q ss_pred cccccccCccccCCCCccEEEEcCC
Q 020667 95 FTSFCTSNLGILEFPSLKELWISGC 119 (323)
Q Consensus 95 l~~~~~~~~~~~~l~~L~~L~l~~c 119 (323)
+..++... +..+++|++|++++|
T Consensus 159 l~~~~~~~--~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 159 LERIEDDT--FQATTSLQNLQLSSN 181 (597)
T ss_dssp CCBCCTTT--TTTCTTCCEEECTTS
T ss_pred CCCCChhh--hhcCCcCcEEECcCC
Confidence 55554432 247788888888887
No 33
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.70 E-value=5.1e-16 Score=138.63 Aligned_cols=217 Identities=15% Similarity=0.176 Sum_probs=139.3
Q ss_pred cccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccc
Q 020667 17 VMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFT 96 (323)
Q Consensus 17 ~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 96 (323)
.+. .+++|++|++++ +.++++.|.. ++.+++|++|+++++. +. ..+.. .+++|++|+++++ .+.
T Consensus 73 ~~~-~l~~L~~L~L~~-n~l~~~~~~~-~~~l~~L~~L~L~~n~-l~---------~l~~~--~~~~L~~L~l~~n-~i~ 136 (332)
T 2ft3_A 73 DFK-GLQHLYALVLVN-NKISKIHEKA-FSPLRKLQKLYISKNH-LV---------EIPPN--LPSSLVELRIHDN-RIR 136 (332)
T ss_dssp TTT-TCTTCCEEECCS-SCCCEECGGG-STTCTTCCEEECCSSC-CC---------SCCSS--CCTTCCEEECCSS-CCC
T ss_pred Hhh-CCCCCcEEECCC-CccCccCHhH-hhCcCCCCEEECCCCc-CC---------ccCcc--ccccCCEEECCCC-ccC
Confidence 455 666666666666 4555554433 5566666666666553 22 11222 2378888888877 455
Q ss_pred cccccCccccCCCCccEEEEcCCchh-----hhhcc--CCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceec
Q 020667 97 SFCTSNLGILEFPSLKELWISGCPKF-----MERYN--RTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVL 169 (323)
Q Consensus 97 ~~~~~~~~~~~l~~L~~L~l~~cp~~-----~~~l~--~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~ 169 (323)
.++... +..+++|++|++++|.-. ...+. +|+.| .+.++ .+..+|..+. ++|++|++++|. ++.+.
T Consensus 137 ~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L-~l~~n-~l~~l~~~~~--~~L~~L~l~~n~-i~~~~ 209 (332)
T 2ft3_A 137 KVPKGV--FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYL-RISEA-KLTGIPKDLP--ETLNELHLDHNK-IQAIE 209 (332)
T ss_dssp CCCSGG--GSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCC-BCCSS-BCSSCCSSSC--SSCSCCBCCSSC-CCCCC
T ss_pred ccCHhH--hCCCccCCEEECCCCccccCCCCcccccCCccCEE-ECcCC-CCCccCcccc--CCCCEEECCCCc-CCccC
Confidence 665543 257899999999988431 11122 44555 34443 4555665443 789999999885 44442
Q ss_pred chhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCC
Q 020667 170 TFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSM 249 (323)
Q Consensus 170 ~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l 249 (323)
+..+..+++|+.|++++|. +..++ ...+..+++|+.|+++++ +++.++.. ...+++|++|+++++ .+
T Consensus 210 -~~~l~~l~~L~~L~L~~N~-l~~~~-------~~~~~~l~~L~~L~L~~N-~l~~lp~~--l~~l~~L~~L~l~~N-~l 276 (332)
T 2ft3_A 210 -LEDLLRYSKLYRLGLGHNQ-IRMIE-------NGSLSFLPTLRELHLDNN-KLSRVPAG--LPDLKLLQVVYLHTN-NI 276 (332)
T ss_dssp -TTSSTTCTTCSCCBCCSSC-CCCCC-------TTGGGGCTTCCEEECCSS-CCCBCCTT--GGGCTTCCEEECCSS-CC
T ss_pred -HHHhcCCCCCCEEECCCCc-CCcCC-------hhHhhCCCCCCEEECCCC-cCeecChh--hhcCccCCEEECCCC-CC
Confidence 3457788999999999875 44444 134567889999999986 78877764 467899999999885 46
Q ss_pred cccCCCC-C------CCCCcceeEccC
Q 020667 250 KIFSEGN-S------STPKLHEVQWPG 269 (323)
Q Consensus 250 ~~lp~~~-~------~~~~L~~L~l~~ 269 (323)
+.+|... . ..++|+.+++.|
T Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~L~l~~ 303 (332)
T 2ft3_A 277 TKVGVNDFCPVGFGVKRAYYNGISLFN 303 (332)
T ss_dssp CBCCTTSSSCSSCCSSSCCBSEEECCS
T ss_pred CccChhHccccccccccccccceEeec
Confidence 6665432 1 146788998855
No 34
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.69 E-value=1.1e-15 Score=149.33 Aligned_cols=241 Identities=12% Similarity=0.087 Sum_probs=162.5
Q ss_pred cccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCC-----------------CCceEEeeccc--cccCCC
Q 020667 17 VMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECP-----------------VLKELIVMDNQ--EERKNN 77 (323)
Q Consensus 17 ~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~-----------------~l~~l~~~~~~--~~~~~~ 77 (323)
.+. .+++|++|++++ +.++++.|. .+..+++|++|++++|. .++.+.+..+. +..+..
T Consensus 324 ~~~-~l~~L~~L~l~~-n~l~~~~~~-~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~ 400 (680)
T 1ziw_A 324 SFQ-WLKCLEHLNMED-NDIPGIKSN-MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 400 (680)
T ss_dssp TTT-TCTTCCEEECCS-CCBCCCCTT-TTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTT
T ss_pred hcc-cCCCCCEEECCC-CccCCCChh-HhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhh
Confidence 355 677888888877 567765443 36788888888888763 34444443332 223445
Q ss_pred ccccCCcCEEecccccccccccccCccccCCCCccEEEEcCCc------hhhhhccCCcceeeecCCCC--ccccCCCCC
Q 020667 78 NVMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCP------KFMERYNRTTNILTERGCDH--LVDLVPSST 149 (323)
Q Consensus 78 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp------~~~~~l~~L~~L~~i~~~~~--l~~l~~~~~ 149 (323)
+..+++|+.|+++++.....++... +..+++|++|++++|. ..+..+++|+.| .+.++.. ++.+|..+.
T Consensus 401 ~~~l~~L~~L~L~~N~l~~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L-~l~~n~l~~~~~~p~~~~ 477 (680)
T 1ziw_A 401 FSWLGHLEVLDLGLNEIGQELTGQE--WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL-MLRRVALKNVDSSPSPFQ 477 (680)
T ss_dssp TTTCTTCCEEECCSSCCEEECCSGG--GTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEE-ECTTSCCBCTTCSSCTTT
T ss_pred hhCCCCCCEEeCCCCcCccccCccc--ccCcccccEEecCCCCcceeChhhhhcCcccccc-hhccccccccccCCcccc
Confidence 5677888888888875434444322 3478888888888883 334456666666 4555442 356677788
Q ss_pred CCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccC-cccccccccccccCeeecccccccceecC
Q 020667 150 SFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDD-VAAKDEVITFRELKELKLLNLESLTSFCS 228 (323)
Q Consensus 150 ~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~-~~~~~~~~~~~~L~~L~l~~c~~L~~l~~ 228 (323)
.+++|+.|++++|. ++.++ +..+.++++|++|++++|. +..++...- +.....+..+++|+.|+++++ +++.++.
T Consensus 478 ~l~~L~~L~Ls~N~-l~~i~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~ 553 (680)
T 1ziw_A 478 PLRNLTILDLSNNN-IANIN-DDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPV 553 (680)
T ss_dssp TCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred cCCCCCEEECCCCC-CCcCC-hhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCH
Confidence 89999999999885 55553 3457889999999999876 444431100 000112467899999999996 7888876
Q ss_pred CCccccCCcccEEeecCCCCCcccCCCC-CCCCCcceeEccC
Q 020667 229 GNCAFKFPSLERLVLDDCPSMKIFSEGN-SSTPKLHEVQWPG 269 (323)
Q Consensus 229 ~~~~~~l~~L~~L~l~~c~~l~~lp~~~-~~~~~L~~L~l~~ 269 (323)
.. +..+++|++|++++ +.++.+|.+. ..+++|+.|++.+
T Consensus 554 ~~-~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~ 593 (680)
T 1ziw_A 554 EV-FKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQK 593 (680)
T ss_dssp TT-TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTT
T ss_pred HH-cccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCC
Confidence 43 46789999999977 5677888764 5789999999944
No 35
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.69 E-value=5e-16 Score=135.65 Aligned_cols=204 Identities=11% Similarity=0.033 Sum_probs=144.8
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCT 100 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 100 (323)
..++|++|++++ +.++++.+. .+..+++|++|+++++. +.. +. +..+..+++|++|+++++..++.++.
T Consensus 30 ~~~~l~~L~l~~-n~i~~~~~~-~~~~~~~L~~L~l~~n~-l~~--~~------~~~~~~l~~L~~L~l~~n~~l~~~~~ 98 (285)
T 1ozn_A 30 IPAASQRIFLHG-NRISHVPAA-SFRACRNLTILWLHSNV-LAR--ID------AAAFTGLALLEQLDLSDNAQLRSVDP 98 (285)
T ss_dssp CCTTCSEEECTT-SCCCEECTT-TTTTCTTCCEEECCSSC-CCE--EC------TTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred CCCCceEEEeeC-CcCCccCHH-HcccCCCCCEEECCCCc-cce--eC------HhhcCCccCCCEEeCCCCCCccccCH
Confidence 357899999998 678886443 37889999999999874 442 11 12233788999999998865777644
Q ss_pred cCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccc
Q 020667 101 SNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRL 180 (323)
Q Consensus 101 ~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L 180 (323)
.. +..+++|++|++++|. +. ...+..+..+++|++|++++|. ++.++ +..+..+++|
T Consensus 99 ~~--~~~l~~L~~L~l~~n~--------l~-----------~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L 155 (285)
T 1ozn_A 99 AT--FHGLGRLHTLHLDRCG--------LQ-----------ELGPGLFRGLAALQYLYLQDNA-LQALP-DDTFRDLGNL 155 (285)
T ss_dssp TT--TTTCTTCCEEECTTSC--------CC-----------CCCTTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTC
T ss_pred HH--hcCCcCCCEEECCCCc--------CC-----------EECHhHhhCCcCCCEEECCCCc-ccccC-HhHhccCCCc
Confidence 33 2478899999988762 11 1113346678899999999885 45442 3346788999
Q ss_pred cEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCC-CCCCC
Q 020667 181 EYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSE-GNSST 259 (323)
Q Consensus 181 ~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~ 259 (323)
++|++++|. ++.++ ...+..+++|+.|+++++ .++.+.... +..+++|++|++++| .++.+|. .+..+
T Consensus 156 ~~L~l~~n~-l~~~~-------~~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~~l 224 (285)
T 1ozn_A 156 THLFLHGNR-ISSVP-------ERAFRGLHSLDRLLLHQN-RVAHVHPHA-FRDLGRLMTLYLFAN-NLSALPTEALAPL 224 (285)
T ss_dssp CEEECCSSC-CCEEC-------TTTTTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCSCCCHHHHTTC
T ss_pred cEEECCCCc-ccccC-------HHHhcCccccCEEECCCC-cccccCHhH-ccCcccccEeeCCCC-cCCcCCHHHcccC
Confidence 999999874 66665 123467899999999996 577774433 467899999999886 4555553 36678
Q ss_pred CCcceeEccC
Q 020667 260 PKLHEVQWPG 269 (323)
Q Consensus 260 ~~L~~L~l~~ 269 (323)
++|++|++.+
T Consensus 225 ~~L~~L~l~~ 234 (285)
T 1ozn_A 225 RALQYLRLND 234 (285)
T ss_dssp TTCCEEECCS
T ss_pred cccCEEeccC
Confidence 9999999943
No 36
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.69 E-value=4.4e-16 Score=139.04 Aligned_cols=212 Identities=17% Similarity=0.134 Sum_probs=137.9
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccC
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSN 102 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 102 (323)
++|++|++++ +.++++.|.. +..+++|++|+++++. +.. ..+. .+..+++|++|+++++ .+..++..
T Consensus 54 ~~l~~L~l~~-n~i~~~~~~~-~~~l~~L~~L~L~~n~-l~~-~~~~-------~~~~l~~L~~L~L~~n-~l~~l~~~- 120 (332)
T 2ft3_A 54 PDTTLLDLQN-NDISELRKDD-FKGLQHLYALVLVNNK-ISK-IHEK-------AFSPLRKLQKLYISKN-HLVEIPPN- 120 (332)
T ss_dssp TTCCEEECCS-SCCCEECTTT-TTTCTTCCEEECCSSC-CCE-ECGG-------GSTTCTTCCEEECCSS-CCCSCCSS-
T ss_pred CCCeEEECCC-CcCCccCHhH-hhCCCCCcEEECCCCc-cCc-cCHh-------HhhCcCCCCEEECCCC-cCCccCcc-
Confidence 5777788877 4566654433 6777888888887764 331 1122 2236778888888776 45555554
Q ss_pred ccccCCCCccEEEEcCC------chhhhhccCCcceeeecCCCCc--cccCCCCCCCCCCCEEEeecCcCcceecchhHH
Q 020667 103 LGILEFPSLKELWISGC------PKFMERYNRTTNILTERGCDHL--VDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIA 174 (323)
Q Consensus 103 ~~~~~l~~L~~L~l~~c------p~~~~~l~~L~~L~~i~~~~~l--~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l 174 (323)
.+++|++|++++| +..+..+++|+.| .+.++... +..+..+..+ +|++|++++|. ++.++ ..
T Consensus 121 ----~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~--~~- 190 (332)
T 2ft3_A 121 ----LPSSLVELRIHDNRIRKVPKGVFSGLRNMNCI-EMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIP--KD- 190 (332)
T ss_dssp ----CCTTCCEEECCSSCCCCCCSGGGSSCSSCCEE-ECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCC--SS-
T ss_pred ----ccccCCEEECCCCccCccCHhHhCCCccCCEE-ECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccC--cc-
Confidence 2377888888777 2234445556655 44444332 1233344444 77777777764 44442 21
Q ss_pred hccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCC
Q 020667 175 KTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSE 254 (323)
Q Consensus 175 ~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 254 (323)
..++|++|++++|. +..++ ...+..+++|+.|+++++ .++.++... +..+++|++|++++| .++.+|.
T Consensus 191 -~~~~L~~L~l~~n~-i~~~~-------~~~l~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~lp~ 258 (332)
T 2ft3_A 191 -LPETLNELHLDHNK-IQAIE-------LEDLLRYSKLYRLGLGHN-QIRMIENGS-LSFLPTLRELHLDNN-KLSRVPA 258 (332)
T ss_dssp -SCSSCSCCBCCSSC-CCCCC-------TTSSTTCTTCSCCBCCSS-CCCCCCTTG-GGGCTTCCEEECCSS-CCCBCCT
T ss_pred -ccCCCCEEECCCCc-CCccC-------HHHhcCCCCCCEEECCCC-cCCcCChhH-hhCCCCCCEEECCCC-cCeecCh
Confidence 12678888887764 33333 134467899999999996 677776543 467899999999886 6778999
Q ss_pred CCCCCCCcceeEccC
Q 020667 255 GNSSTPKLHEVQWPG 269 (323)
Q Consensus 255 ~~~~~~~L~~L~l~~ 269 (323)
++..+++|++|++.+
T Consensus 259 ~l~~l~~L~~L~l~~ 273 (332)
T 2ft3_A 259 GLPDLKLLQVVYLHT 273 (332)
T ss_dssp TGGGCTTCCEEECCS
T ss_pred hhhcCccCCEEECCC
Confidence 888999999999944
No 37
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.69 E-value=3.8e-15 Score=139.17 Aligned_cols=91 Identities=15% Similarity=0.262 Sum_probs=43.0
Q ss_pred ccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecC-----------CCCceEEeeccccccCCCccccCCcCE
Q 020667 18 MSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVEC-----------PVLKELIVMDNQEERKNNNVMFPQLQY 86 (323)
Q Consensus 18 ~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c-----------~~l~~l~~~~~~~~~~~~~~~l~~L~~ 86 (323)
+. .+++|++|++++ +.++++ +. +..+++|++|++++| +.++.+.+...... ...+..+++|++
T Consensus 108 ~~-~l~~L~~L~L~~-n~l~~~-~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~l~~L~~ 181 (466)
T 1o6v_A 108 LA-NLTNLTGLTLFN-NQITDI-DP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTD-LKPLANLTTLER 181 (466)
T ss_dssp GT-TCTTCCEEECCS-SCCCCC-GG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCC-CGGGTTCTTCCE
T ss_pred hc-CCCCCCEEECCC-CCCCCC-hH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccC-chhhccCCCCCE
Confidence 44 566666666665 345543 33 456666666666543 23333332211111 112445666666
Q ss_pred EecccccccccccccCccccCCCCccEEEEcCC
Q 020667 87 LKMFNLENFTSFCTSNLGILEFPSLKELWISGC 119 (323)
Q Consensus 87 L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 119 (323)
|+++++. +..++. ...+++|++|++++|
T Consensus 182 L~l~~n~-l~~~~~----l~~l~~L~~L~l~~n 209 (466)
T 1o6v_A 182 LDISSNK-VSDISV----LAKLTNLESLIATNN 209 (466)
T ss_dssp EECCSSC-CCCCGG----GGGCTTCSEEECCSS
T ss_pred EECcCCc-CCCChh----hccCCCCCEEEecCC
Confidence 6666553 333321 124455555555544
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.68 E-value=2e-15 Score=135.37 Aligned_cols=187 Identities=17% Similarity=0.233 Sum_probs=122.1
Q ss_pred cccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccc
Q 020667 17 VMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFT 96 (323)
Q Consensus 17 ~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 96 (323)
++. .+++|++|++++| .++++ |. +..+++|++|++++|. +..+ +.+..+++|++|+++++ .+.
T Consensus 61 ~~~-~~~~L~~L~l~~n-~i~~~-~~--~~~l~~L~~L~L~~n~-i~~~----------~~~~~l~~L~~L~l~~n-~i~ 123 (347)
T 4fmz_A 61 GIE-YLTNLEYLNLNGN-QITDI-SP--LSNLVKLTNLYIGTNK-ITDI----------SALQNLTNLRELYLNED-NIS 123 (347)
T ss_dssp TGG-GCTTCCEEECCSS-CCCCC-GG--GTTCTTCCEEECCSSC-CCCC----------GGGTTCTTCSEEECTTS-CCC
T ss_pred hhh-hcCCccEEEccCC-ccccc-hh--hhcCCcCCEEEccCCc-ccCc----------hHHcCCCcCCEEECcCC-ccc
Confidence 366 7888888888884 67764 44 6788888888888773 3321 12448999999999987 466
Q ss_pred cccccCccccCCCCccEEEEcCCch-----hhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecch
Q 020667 97 SFCTSNLGILEFPSLKELWISGCPK-----FMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTF 171 (323)
Q Consensus 97 ~~~~~~~~~~~l~~L~~L~l~~cp~-----~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~ 171 (323)
.++.. ..+++|++|++++|+. .+..+++|+.| .+.+|. +..++. +..+++|++|++++|. ++.++
T Consensus 124 ~~~~~----~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L-~l~~~~-~~~~~~-~~~l~~L~~L~l~~n~-l~~~~-- 193 (347)
T 4fmz_A 124 DISPL----ANLTKMYSLNLGANHNLSDLSPLSNMTGLNYL-TVTESK-VKDVTP-IANLTDLYSLSLNYNQ-IEDIS-- 193 (347)
T ss_dssp CCGGG----TTCTTCCEEECTTCTTCCCCGGGTTCTTCCEE-ECCSSC-CCCCGG-GGGCTTCSEEECTTSC-CCCCG--
T ss_pred Cchhh----ccCCceeEEECCCCCCcccccchhhCCCCcEE-EecCCC-cCCchh-hccCCCCCEEEccCCc-ccccc--
Confidence 65542 4799999999999942 24445666666 456554 444433 7789999999999985 55552
Q ss_pred hHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecC
Q 020667 172 SIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDD 245 (323)
Q Consensus 172 ~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~ 245 (323)
. +..+++|+.|++++|. +..++. +..+++|++|++++| .++.++. ...+++|++|++++
T Consensus 194 ~-~~~l~~L~~L~l~~n~-l~~~~~---------~~~~~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~ 252 (347)
T 4fmz_A 194 P-LASLTSLHYFTAYVNQ-ITDITP---------VANMTRLNSLKIGNN-KITDLSP---LANLSQLTWLEIGT 252 (347)
T ss_dssp G-GGGCTTCCEEECCSSC-CCCCGG---------GGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCS
T ss_pred c-ccCCCccceeecccCC-CCCCch---------hhcCCcCCEEEccCC-ccCCCcc---hhcCCCCCEEECCC
Confidence 2 7889999999998874 333321 234555555555553 3333332 22344444444444
No 39
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.68 E-value=2.1e-15 Score=134.46 Aligned_cols=218 Identities=16% Similarity=0.175 Sum_probs=158.6
Q ss_pred ccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccc
Q 020667 16 TVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENF 95 (323)
Q Consensus 16 ~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 95 (323)
..+. .+++|++|++++ +.++++.|.. ++.+++|++|+++++. ++ .++.. .+++|++|+++++ .+
T Consensus 70 ~~~~-~l~~L~~L~L~~-n~l~~~~~~~-~~~l~~L~~L~Ls~n~-l~--~l~~~---------~~~~L~~L~l~~n-~l 133 (330)
T 1xku_A 70 GDFK-NLKNLHTLILIN-NKISKISPGA-FAPLVKLERLYLSKNQ-LK--ELPEK---------MPKTLQELRVHEN-EI 133 (330)
T ss_dssp TTTT-TCTTCCEEECCS-SCCCCBCTTT-TTTCTTCCEEECCSSC-CS--BCCSS---------CCTTCCEEECCSS-CC
T ss_pred hhhc-cCCCCCEEECCC-CcCCeeCHHH-hcCCCCCCEEECCCCc-CC--ccChh---------hcccccEEECCCC-cc
Confidence 3577 899999999998 6788875655 7899999999999875 44 22221 3479999999987 45
Q ss_pred ccccccCccccCCCCccEEEEcCCch--------hhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcce
Q 020667 96 TSFCTSNLGILEFPSLKELWISGCPK--------FMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKI 167 (323)
Q Consensus 96 ~~~~~~~~~~~~l~~L~~L~l~~cp~--------~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~ 167 (323)
..++... +..+++|++|++++|.- .+..+++|+.| .+.++ .+..+|..+. ++|++|++++|. ++.
T Consensus 134 ~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L-~l~~n-~l~~l~~~~~--~~L~~L~l~~n~-l~~ 206 (330)
T 1xku_A 134 TKVRKSV--FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI-RIADT-NITTIPQGLP--PSLTELHLDGNK-ITK 206 (330)
T ss_dssp CBBCHHH--HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE-ECCSS-CCCSCCSSCC--TTCSEEECTTSC-CCE
T ss_pred cccCHhH--hcCCccccEEECCCCcCCccCcChhhccCCCCcCEE-ECCCC-ccccCCcccc--ccCCEEECCCCc-CCc
Confidence 5555432 24789999999998832 34445666666 45444 4556665543 899999999986 555
Q ss_pred ecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCC
Q 020667 168 VLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCP 247 (323)
Q Consensus 168 l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~ 247 (323)
+. +..+..+++|+.|++++|. +..++ ...+..+++|++|+++++ .++.++.. ...+++|++|++++|
T Consensus 207 ~~-~~~~~~l~~L~~L~Ls~n~-l~~~~-------~~~~~~l~~L~~L~L~~N-~l~~lp~~--l~~l~~L~~L~l~~N- 273 (330)
T 1xku_A 207 VD-AASLKGLNNLAKLGLSFNS-ISAVD-------NGSLANTPHLRELHLNNN-KLVKVPGG--LADHKYIQVVYLHNN- 273 (330)
T ss_dssp EC-TGGGTTCTTCCEEECCSSC-CCEEC-------TTTGGGSTTCCEEECCSS-CCSSCCTT--TTTCSSCCEEECCSS-
T ss_pred cC-HHHhcCCCCCCEEECCCCc-CceeC-------hhhccCCCCCCEEECCCC-cCccCChh--hccCCCcCEEECCCC-
Confidence 42 4567889999999999876 55554 134567899999999997 78888764 367899999999886
Q ss_pred CCcccCCCCC-------CCCCcceeEccC
Q 020667 248 SMKIFSEGNS-------STPKLHEVQWPG 269 (323)
Q Consensus 248 ~l~~lp~~~~-------~~~~L~~L~l~~ 269 (323)
.++.+|.... ..++++.+++.+
T Consensus 274 ~i~~~~~~~f~~~~~~~~~~~l~~l~l~~ 302 (330)
T 1xku_A 274 NISAIGSNDFCPPGYNTKKASYSGVSLFS 302 (330)
T ss_dssp CCCCCCTTSSSCSSCCTTSCCCSEEECCS
T ss_pred cCCccChhhcCCcccccccccccceEeec
Confidence 4666665322 246788898854
No 40
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.68 E-value=2.6e-15 Score=150.22 Aligned_cols=43 Identities=12% Similarity=0.094 Sum_probs=26.9
Q ss_pred cccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecC
Q 020667 15 VTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVEC 59 (323)
Q Consensus 15 p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c 59 (323)
|..+. .+++|++|++++|.....+.|. .++++++|++|+++++
T Consensus 41 ~~~~~-~l~~L~~LdLs~n~~~~~i~~~-~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 41 ASSFP-FLEQLQLLELGSQYTPLTIDKE-AFRNLPNLRILDLGSS 83 (844)
T ss_dssp SSSCS-SCCSCSEEEECTTCCCCEECTT-TTSSCTTCCEEECTTC
T ss_pred hhHCc-ccccCeEEeCCCCCCccccCHH-HhcCCCCCCEEECCCC
Confidence 44566 7777777777775444443233 3667777777777654
No 41
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=1.2e-16 Score=159.01 Aligned_cols=234 Identities=11% Similarity=0.089 Sum_probs=155.5
Q ss_pred ccccccccCCcccEEeeecccccce-----------------eccchhHh--cCCCccEEEEecCCCCceEEeecccccc
Q 020667 14 QVTVMSCGIQNLMHLTLRSCMNLRY-----------------LFSSSIVS--SFVRLQRIEIVECPVLKELIVMDNQEER 74 (323)
Q Consensus 14 ~p~~~~~~l~~L~~L~L~~c~~l~~-----------------~~p~~~~~--~l~~L~~L~ls~c~~l~~l~~~~~~~~~ 74 (323)
.|.+++ ++++|++|+|++ +.+++ .+|.. ++ ++++|++|++++|.... . .
T Consensus 440 IP~~l~-~L~~L~~L~Ls~-N~Lsg~~i~~~~~~~s~n~~~g~iP~~-l~f~~L~~L~~L~Ls~N~l~~--~-------i 507 (876)
T 4ecn_A 440 ISKAIQ-RLTKLQIIYFAN-SPFTYDNIAVDWEDANSDYAKQYENEE-LSWSNLKDLTDVELYNCPNMT--Q-------L 507 (876)
T ss_dssp ECGGGG-GCTTCCEEEEES-CCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEESCTTCC--S-------C
T ss_pred hhHHHh-cCCCCCEEECcC-CcCCCCcccccccccccccccccCChh-hhhccCCCCCEEECcCCCCCc--c-------C
Confidence 588899 999999999999 67887 24766 45 99999999999987554 2 2
Q ss_pred CCCccccCCcCEEeccccccccc--ccccCc----cccCCCCccEEEEcCC-----ch--hhhhccCCcceeeecCCCCc
Q 020667 75 KNNNVMFPQLQYLKMFNLENFTS--FCTSNL----GILEFPSLKELWISGC-----PK--FMERYNRTTNILTERGCDHL 141 (323)
Q Consensus 75 ~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~----~~~~l~~L~~L~l~~c-----p~--~~~~l~~L~~L~~i~~~~~l 141 (323)
|..+..+++|+.|+++++..+.. +|.... ....+++|+.|++++| |. .++.+++|+.| .+.++..
T Consensus 508 P~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L-~Ls~N~l- 585 (876)
T 4ecn_A 508 PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLL-DCVHNKV- 585 (876)
T ss_dssp CGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEE-ECTTSCC-
T ss_pred hHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEE-ECCCCCc-
Confidence 33444889999999998853543 443211 0235668999999888 55 56667777777 4555543
Q ss_pred cccCCCCCCCCCCCEEEeecCcCcceecchhHHhcccc-ccEEEEccCcccceeeeccCccc---------------c--
Q 020667 142 VDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVR-LEYMEIESCDRITEIVLVDDVAA---------------K-- 203 (323)
Q Consensus 142 ~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~-L~~L~l~~c~~l~~i~~~~~~~~---------------~-- 203 (323)
..+| .+..+++|+.|++++|. +..+ +..+..+++ |+.|++++|. +..+|..-.... .
T Consensus 586 ~~lp-~~~~L~~L~~L~Ls~N~-l~~l--p~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~i 660 (876)
T 4ecn_A 586 RHLE-AFGTNVKLTDLKLDYNQ-IEEI--PEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEG 660 (876)
T ss_dssp CBCC-CCCTTSEESEEECCSSC-CSCC--CTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTTTS
T ss_pred ccch-hhcCCCcceEEECcCCc-cccc--hHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCCCcc
Confidence 3776 67788888888888875 4444 455777787 8888888775 445542100000 0
Q ss_pred c----cc--ccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCCCC--------CCcceeEccC
Q 020667 204 D----EV--ITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSST--------PKLHEVQWPG 269 (323)
Q Consensus 204 ~----~~--~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~--------~~L~~L~l~~ 269 (323)
. .. ...++|+.|+++++ .++.++... ...+++|++|++++| .++.+|.+.... ++|++|++.+
T Consensus 661 p~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~-~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~ 737 (876)
T 4ecn_A 661 RNISCSMDDYKGINASTVTLSYN-EIQKFPTEL-FATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRF 737 (876)
T ss_dssp SSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHH-HHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCS
T ss_pred ccchhhhccccCCCcCEEEccCC-cCCccCHHH-HccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCC
Confidence 0 00 12236777777775 555555432 235788999999876 556788765432 2889999844
No 42
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.68 E-value=1.2e-15 Score=141.59 Aligned_cols=203 Identities=19% Similarity=0.222 Sum_probs=153.5
Q ss_pred cccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccc
Q 020667 15 VTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLEN 94 (323)
Q Consensus 15 p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 94 (323)
+..+. .+++|++|+|++ +.++++.+. .+..+++|++|+++++. ++ .++. ..+..+++|++|+++++ .
T Consensus 81 ~~~~~-~l~~L~~L~Ls~-n~i~~i~~~-~~~~l~~L~~L~L~~n~-l~--~~~~------~~~~~l~~L~~L~L~~N-~ 147 (440)
T 3zyj_A 81 VNSFK-HLRHLEILQLSR-NHIRTIEIG-AFNGLANLNTLELFDNR-LT--TIPN------GAFVYLSKLKELWLRNN-P 147 (440)
T ss_dssp TTTTS-SCSSCCEEECCS-SCCCEECGG-GGTTCSSCCEEECCSSC-CS--SCCT------TTSCSCSSCCEEECCSC-C
T ss_pred HHHhh-CCCCCCEEECCC-CcCCccChh-hccCCccCCEEECCCCc-CC--eeCH------hHhhccccCceeeCCCC-c
Confidence 45577 899999999999 678887444 47899999999999874 44 2221 12337899999999987 4
Q ss_pred cccccccCccccCCCCccEEEEcCCc-------hhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcce
Q 020667 95 FTSFCTSNLGILEFPSLKELWISGCP-------KFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKI 167 (323)
Q Consensus 95 l~~~~~~~~~~~~l~~L~~L~l~~cp-------~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~ 167 (323)
+..++... +..+++|++|++.+|. ..+..+++|+.| .+.+| .+..+| .+..+++|++|++++|. ++.
T Consensus 148 i~~~~~~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L-~L~~n-~l~~~~-~~~~l~~L~~L~Ls~N~-l~~ 221 (440)
T 3zyj_A 148 IESIPSYA--FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL-NLAMC-NLREIP-NLTPLIKLDELDLSGNH-LSA 221 (440)
T ss_dssp CCEECTTT--TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE-ECTTS-CCSSCC-CCTTCSSCCEEECTTSC-CCE
T ss_pred ccccCHHH--hhhCcccCEeCCCCCCCcceeCcchhhcccccCee-cCCCC-cCcccc-ccCCCcccCEEECCCCc-cCc
Confidence 66666543 3578999999999873 234556677777 45555 555665 47889999999999985 555
Q ss_pred ecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCC
Q 020667 168 VLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCP 247 (323)
Q Consensus 168 l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~ 247 (323)
+. +..+.++++|+.|++++|. +..++ ...+..+++|+.|+++++ +++.++... +..+++|++|++++++
T Consensus 222 ~~-~~~~~~l~~L~~L~L~~n~-l~~~~-------~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 222 IR-PGSFQGLMHLQKLWMIQSQ-IQVIE-------RNAFDNLQSLVEINLAHN-NLTLLPHDL-FTPLHHLERIHLHHNP 290 (440)
T ss_dssp EC-TTTTTTCTTCCEEECTTCC-CCEEC-------TTSSTTCTTCCEEECTTS-CCCCCCTTT-TSSCTTCCEEECCSSC
T ss_pred cC-hhhhccCccCCEEECCCCc-eeEEC-------hhhhcCCCCCCEEECCCC-CCCccChhH-hccccCCCEEEcCCCC
Confidence 53 4567899999999999875 55554 234567899999999996 888887654 4678999999998876
No 43
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.68 E-value=1.3e-15 Score=141.83 Aligned_cols=203 Identities=17% Similarity=0.167 Sum_probs=153.5
Q ss_pred cccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccc
Q 020667 15 VTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLEN 94 (323)
Q Consensus 15 p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 94 (323)
|..+. .+++|++|+|++ +.++++.|.. +..+++|++|+++++. +. .++. ..+..+++|++|+++++ .
T Consensus 92 ~~~~~-~l~~L~~L~Ls~-n~i~~~~~~~-~~~l~~L~~L~L~~n~-l~--~~~~------~~~~~l~~L~~L~L~~N-~ 158 (452)
T 3zyi_A 92 ADTFR-HLHHLEVLQLGR-NSIRQIEVGA-FNGLASLNTLELFDNW-LT--VIPS------GAFEYLSKLRELWLRNN-P 158 (452)
T ss_dssp TTTTT-TCTTCCEEECCS-SCCCEECTTT-TTTCTTCCEEECCSSC-CS--BCCT------TTSSSCTTCCEEECCSC-C
T ss_pred HHHcC-CCCCCCEEECCC-CccCCcChhh-ccCcccCCEEECCCCc-CC--ccCh------hhhcccCCCCEEECCCC-C
Confidence 55677 899999999998 6888875544 7899999999999875 44 2221 12337899999999988 4
Q ss_pred cccccccCccccCCCCccEEEEcCCc-------hhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcce
Q 020667 95 FTSFCTSNLGILEFPSLKELWISGCP-------KFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKI 167 (323)
Q Consensus 95 l~~~~~~~~~~~~l~~L~~L~l~~cp-------~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~ 167 (323)
+..++... +..+++|++|++++|. ..+..+++|+.| ++.+| .+..+| .+..+++|++|++++|. ++.
T Consensus 159 l~~~~~~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L-~L~~n-~l~~~~-~~~~l~~L~~L~Ls~N~-l~~ 232 (452)
T 3zyi_A 159 IESIPSYA--FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL-NLGMC-NIKDMP-NLTPLVGLEELEMSGNH-FPE 232 (452)
T ss_dssp CCEECTTT--TTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE-ECTTS-CCSSCC-CCTTCTTCCEEECTTSC-CSE
T ss_pred cceeCHhH--HhcCCcccEEeCCCCCCccccChhhccCCCCCCEE-ECCCC-cccccc-cccccccccEEECcCCc-Ccc
Confidence 66666543 3578999999999873 234456677777 45555 455664 57889999999999986 454
Q ss_pred ecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCC
Q 020667 168 VLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCP 247 (323)
Q Consensus 168 l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~ 247 (323)
+. +..+.++++|+.|++++|. +..++ ...+..+++|+.|+++++ +++.++... +..+++|++|++++++
T Consensus 233 ~~-~~~~~~l~~L~~L~L~~n~-l~~~~-------~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 233 IR-PGSFHGLSSLKKLWVMNSQ-VSLIE-------RNAFDGLASLVELNLAHN-NLSSLPHDL-FTPLRYLVELHLHHNP 301 (452)
T ss_dssp EC-GGGGTTCTTCCEEECTTSC-CCEEC-------TTTTTTCTTCCEEECCSS-CCSCCCTTS-STTCTTCCEEECCSSC
T ss_pred cC-cccccCccCCCEEEeCCCc-CceEC-------HHHhcCCCCCCEEECCCC-cCCccChHH-hccccCCCEEEccCCC
Confidence 42 5568899999999999876 55554 134567899999999996 888887654 4678999999999876
No 44
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.67 E-value=1e-15 Score=137.74 Aligned_cols=217 Identities=15% Similarity=0.150 Sum_probs=162.3
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccC
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSN 102 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 102 (323)
+++++|+|++ ++++.+ |...+..+++|++|+|+++..++ .++.. .+..+++|+++.+.++.++..++...
T Consensus 30 ~~l~~L~Ls~-N~i~~i-~~~~f~~l~~L~~L~Ls~N~i~~--~i~~~------~f~~L~~l~~~l~~~~N~l~~l~~~~ 99 (350)
T 4ay9_X 30 RNAIELRFVL-TKLRVI-QKGAFSGFGDLEKIEISQNDVLE--VIEAD------VFSNLPKLHEIRIEKANNLLYINPEA 99 (350)
T ss_dssp TTCSEEEEES-CCCSEE-CTTSSTTCTTCCEEEEECCTTCC--EECTT------SBCSCTTCCEEEEEEETTCCEECTTS
T ss_pred CCCCEEEccC-CcCCCc-CHHHHcCCCCCCEEECcCCCCCC--ccChh------HhhcchhhhhhhcccCCcccccCchh
Confidence 6899999999 789986 65557899999999999998766 33322 11267788877776667888887654
Q ss_pred ccccCCCCccEEEEcCCch------hhhhccCCcceeeecCCCCccccCCC-CCCC-CCCCEEEeecCcCcceecchhHH
Q 020667 103 LGILEFPSLKELWISGCPK------FMERYNRTTNILTERGCDHLVDLVPS-STSF-QNLTNLVVSCCKGLKIVLTFSIA 174 (323)
Q Consensus 103 ~~~~~l~~L~~L~l~~cp~------~~~~l~~L~~L~~i~~~~~l~~l~~~-~~~l-~~L~~L~l~~c~~l~~l~~~~~l 174 (323)
+..+++|++|++++|.- ......++..+ .+.++..+..++.. +..+ ..++.|+++++. ++.+ +..+
T Consensus 100 --f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l-~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i--~~~~ 173 (350)
T 4ay9_X 100 --FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL-DIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEI--HNSA 173 (350)
T ss_dssp --BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEE-EEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEE--CTTS
T ss_pred --hhhccccccccccccccccCCchhhcccchhhhh-hhccccccccccccchhhcchhhhhhcccccc-ccCC--Chhh
Confidence 35789999999998731 11112222333 35567777777653 3344 468899998874 6766 3444
Q ss_pred hccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCC
Q 020667 175 KTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSE 254 (323)
Q Consensus 175 ~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 254 (323)
...++|+.|.+.++..++.++. ..+..+++|+.|+++++ +++.++... +.+|+.|.+.++..++.+|.
T Consensus 174 f~~~~L~~l~l~~~n~l~~i~~-------~~f~~l~~L~~LdLs~N-~l~~lp~~~----~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 174 FNGTQLDELNLSDNNNLEELPN-------DVFHGASGPVILDISRT-RIHSLPSYG----LENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp STTEEEEEEECTTCTTCCCCCT-------TTTTTEECCSEEECTTS-CCCCCCSSS----CTTCCEEECTTCTTCCCCCC
T ss_pred ccccchhHHhhccCCcccCCCH-------HHhccCcccchhhcCCC-CcCccChhh----hccchHhhhccCCCcCcCCC
Confidence 5667899999999999999882 33467899999999996 899998755 88999999999999999996
Q ss_pred CCCCCCCcceeEcc
Q 020667 255 GNSSTPKLHEVQWP 268 (323)
Q Consensus 255 ~~~~~~~L~~L~l~ 268 (323)
+..+++|+.+++.
T Consensus 242 -l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 242 -LEKLVALMEASLT 254 (350)
T ss_dssp -TTTCCSCCEEECS
T ss_pred -chhCcChhhCcCC
Confidence 6688999999983
No 45
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.67 E-value=6.6e-18 Score=150.96 Aligned_cols=114 Identities=18% Similarity=0.185 Sum_probs=58.0
Q ss_pred CCCCCCCCEEEeecCcCcceecchhHHhccc-cccEEEEccCc-ccc--eeeeccCcccccccccccccCeeeccccccc
Q 020667 148 STSFQNLTNLVVSCCKGLKIVLTFSIAKTLV-RLEYMEIESCD-RIT--EIVLVDDVAAKDEVITFRELKELKLLNLESL 223 (323)
Q Consensus 148 ~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~-~L~~L~l~~c~-~l~--~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L 223 (323)
+..+++|++|++++|..+++...+..+..++ +|++|++++|. .+. .++ ..+..+++|+.|++++|..+
T Consensus 164 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~--------~~~~~~~~L~~L~l~~~~~l 235 (336)
T 2ast_B 164 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS--------TLVRRCPNLVHLDLSDSVML 235 (336)
T ss_dssp HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH--------HHHHHCTTCSEEECTTCTTC
T ss_pred HhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH--------HHHhhCCCCCEEeCCCCCcC
Confidence 4455666666666664444322234455666 66666666664 232 121 12235666666666666544
Q ss_pred ceecCCCccccCCcccEEeecCCCCCcc-cCCCCCCCCCcceeEccCc
Q 020667 224 TSFCSGNCAFKFPSLERLVLDDCPSMKI-FSEGNSSTPKLHEVQWPGE 270 (323)
Q Consensus 224 ~~l~~~~~~~~l~~L~~L~l~~c~~l~~-lp~~~~~~~~L~~L~l~~~ 270 (323)
+..... .+..+++|++|++++|..+.. ....+..+++|++|++.|+
T Consensus 236 ~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 236 KNDCFQ-EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CGGGGG-GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CHHHHH-HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 432221 134556666666666653321 0112335666666666554
No 46
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.66 E-value=1.2e-15 Score=144.35 Aligned_cols=86 Identities=17% Similarity=0.183 Sum_probs=52.4
Q ss_pred cccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccc
Q 020667 15 VTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLEN 94 (323)
Q Consensus 15 p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 94 (323)
|..+. .+++|++|++++ +.++++.|.. ++.+++|++|+++++. ++.+ +.. .+++|++|+++++.
T Consensus 38 ~~~~~-~l~~L~~L~Ls~-n~l~~~~~~~-~~~l~~L~~L~Ls~N~-l~~l--p~~---------~l~~L~~L~L~~N~- 101 (520)
T 2z7x_B 38 TSDIL-SLSKLRILIISH-NRIQYLDISV-FKFNQELEYLDLSHNK-LVKI--SCH---------PTVNLKHLDLSFNA- 101 (520)
T ss_dssp HHHHT-TCTTCCEEECCS-SCCCEEEGGG-GTTCTTCCEEECCSSC-CCEE--ECC---------CCCCCSEEECCSSC-
T ss_pred hhhcc-ccccccEEecCC-CccCCcChHH-hhcccCCCEEecCCCc-eeec--Ccc---------ccCCccEEeccCCc-
Confidence 34566 788888888888 5677765544 6788888888888763 3322 211 35666666666653
Q ss_pred ccc--ccccCccccCCCCccEEEEcCC
Q 020667 95 FTS--FCTSNLGILEFPSLKELWISGC 119 (323)
Q Consensus 95 l~~--~~~~~~~~~~l~~L~~L~l~~c 119 (323)
+.. +|.. ++.+++|++|++++|
T Consensus 102 l~~~~~p~~---~~~l~~L~~L~L~~n 125 (520)
T 2z7x_B 102 FDALPICKE---FGNMSQLKFLGLSTT 125 (520)
T ss_dssp CSSCCCCGG---GGGCTTCCEEEEEES
T ss_pred cccccchhh---hccCCcceEEEecCc
Confidence 332 2222 235666666666655
No 47
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.66 E-value=5.2e-15 Score=128.56 Aligned_cols=206 Identities=20% Similarity=0.231 Sum_probs=145.8
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccC
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSN 102 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 102 (323)
++|++|++++ ++++++.+.. +..+++|++|+++++. +. .+.. ..+..+++|++|+++++ .+..++...
T Consensus 28 ~~l~~L~ls~-n~l~~~~~~~-~~~l~~L~~L~l~~n~-l~--~~~~------~~~~~l~~L~~L~L~~n-~l~~~~~~~ 95 (276)
T 2z62_A 28 FSTKNLDLSF-NPLRHLGSYS-FFSFPELQVLDLSRCE-IQ--TIED------GAYQSLSHLSTLILTGN-PIQSLALGA 95 (276)
T ss_dssp TTCCEEECTT-CCCCEECTTT-TTTCTTCSEEECTTCC-CC--EECT------TTTTTCTTCCEEECTTC-CCCEECTTT
T ss_pred CCccEEECCC-CcccccCHhH-hccccCCcEEECCCCc-CC--ccCH------HHccCCcCCCEEECCCC-ccCccChhh
Confidence 5799999998 6788874433 7889999999999874 44 2221 12337899999999987 455555432
Q ss_pred ccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCC-CCCCCCCCCEEEeecCcCcceecchhHHhcccccc
Q 020667 103 LGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVP-SSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLE 181 (323)
Q Consensus 103 ~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~ 181 (323)
+..+++|++|++++|. + ..+++ .+..+++|++|++++|. ++.+..+..+.++++|+
T Consensus 96 --~~~l~~L~~L~l~~n~--------l------------~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~ 152 (276)
T 2z62_A 96 --FSGLSSLQKLVAVETN--------L------------ASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLE 152 (276)
T ss_dssp --TTTCTTCCEEECTTSC--------C------------CCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCC
T ss_pred --hcCCccccEEECCCCC--------c------------cccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCC
Confidence 2578999999988762 1 11212 36678999999999885 44433356788899999
Q ss_pred EEEEccCcccceeeeccCcccccccccccccC----eeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCC-
Q 020667 182 YMEIESCDRITEIVLVDDVAAKDEVITFRELK----ELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGN- 256 (323)
Q Consensus 182 ~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~----~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~- 256 (323)
+|++++|. ++.++. ..+..+++|+ .|+++++ .++.++... ....+|++|++++|. ++.+|...
T Consensus 153 ~L~Ls~N~-l~~~~~-------~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~--~~~~~L~~L~L~~n~-l~~~~~~~~ 220 (276)
T 2z62_A 153 HLDLSSNK-IQSIYC-------TDLRVLHQMPLLNLSLDLSLN-PMNFIQPGA--FKEIRLKELALDTNQ-LKSVPDGIF 220 (276)
T ss_dssp EEECCSSC-CCEECG-------GGGHHHHTCTTCCEEEECCSS-CCCEECTTS--SCSCCEEEEECCSSC-CSCCCTTTT
T ss_pred EEECCCCC-CCcCCH-------HHhhhhhhccccceeeecCCC-cccccCccc--cCCCcccEEECCCCc-eeecCHhHh
Confidence 99999875 555541 2334556666 7888885 788887654 445689999998865 77777654
Q ss_pred CCCCCcceeEccCccccccccc
Q 020667 257 SSTPKLHEVQWPGEARWAWKDD 278 (323)
Q Consensus 257 ~~~~~L~~L~l~~~~~~~~~~~ 278 (323)
..+++|++|++ ..+.+.++
T Consensus 221 ~~l~~L~~L~l---~~N~~~c~ 239 (276)
T 2z62_A 221 DRLTSLQKIWL---HTNPWDCS 239 (276)
T ss_dssp TTCCSCCEEEC---CSSCBCCC
T ss_pred cccccccEEEc---cCCccccc
Confidence 67899999999 55555543
No 48
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.66 E-value=2e-15 Score=144.30 Aligned_cols=111 Identities=17% Similarity=0.187 Sum_probs=70.1
Q ss_pred CCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccc--
Q 020667 147 SSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLT-- 224 (323)
Q Consensus 147 ~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~-- 224 (323)
.+..+++|++|++++|. +........+.++++|++|++++|...+..+ ..+..+++|++|++.+|. ++
T Consensus 391 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~l~~n~-l~~~ 460 (570)
T 2z63_A 391 NFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFN--------GIFNGLSSLEVLKMAGNS-FQEN 460 (570)
T ss_dssp EEETCTTCCEEECTTSE-EESCTTSCTTTTCTTCCEEECTTSCCEECCT--------TTTTTCTTCCEEECTTCE-EGGG
T ss_pred cccccCCCCEEEccCCc-cccccchhhhhcCCCCCEEeCcCCcccccch--------hhhhcCCcCcEEECcCCc-Cccc
Confidence 34556666666666654 2222212245566777777777665332222 334567888888888874 43
Q ss_pred eecCCCccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEccC
Q 020667 225 SFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQWPG 269 (323)
Q Consensus 225 ~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~ 269 (323)
.++. .+..+++|++|++++|...+..|..+..+++|++|++.+
T Consensus 461 ~~p~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 503 (570)
T 2z63_A 461 FLPD--IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503 (570)
T ss_dssp EECS--CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cchh--hhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence 3543 246788899999988765555577777888999999944
No 49
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.66 E-value=1.5e-15 Score=144.61 Aligned_cols=129 Identities=12% Similarity=0.131 Sum_probs=71.6
Q ss_pred ccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccc
Q 020667 126 YNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDE 205 (323)
Q Consensus 126 l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~ 205 (323)
+++|+.| ++.+| .+..+|..+..+++|++|++++|. ++.++ . ...++|+.|++++|. +..++
T Consensus 386 l~~L~~L-~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~--~--~~~~~L~~L~Ls~N~-l~~~~---------- 447 (549)
T 2z81_A 386 LKNLTSL-DISRN-TFHPMPDSCQWPEKMRFLNLSSTG-IRVVK--T--CIPQTLEVLDVSNNN-LDSFS---------- 447 (549)
T ss_dssp CTTCCEE-ECTTC-CCCCCCSCCCCCTTCCEEECTTSC-CSCCC--T--TSCTTCSEEECCSSC-CSCCC----------
T ss_pred CCCCCEE-ECCCC-CCccCChhhcccccccEEECCCCC-ccccc--c--hhcCCceEEECCCCC-hhhhc----------
Confidence 3444444 33333 333455545555555555555553 33321 1 012355555555543 33222
Q ss_pred cccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEccCccccccccchh
Q 020667 206 VITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQWPGEARWAWKDDLN 280 (323)
Q Consensus 206 ~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~~~~~~~~~~l~ 280 (323)
..+++|++|+++++ +++.++.. ..+++|++|++++|...+..|..+..+++|+.|++ ..+.+.++.+
T Consensus 448 -~~l~~L~~L~Ls~N-~l~~ip~~---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l---~~N~~~~~~~ 514 (549)
T 2z81_A 448 -LFLPRLQELYISRN-KLKTLPDA---SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWL---HTNPWDCSCP 514 (549)
T ss_dssp -CCCTTCCEEECCSS-CCSSCCCG---GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEEC---CSSCBCCCHH
T ss_pred -ccCChhcEEECCCC-ccCcCCCc---ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEe---cCCCccCCCc
Confidence 36778888888886 67777652 35788888888876433333444667788888888 5555655544
No 50
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.66 E-value=1.6e-15 Score=144.95 Aligned_cols=88 Identities=16% Similarity=0.082 Sum_probs=51.9
Q ss_pred cccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccc
Q 020667 15 VTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLEN 94 (323)
Q Consensus 15 p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 94 (323)
|..+. .+++|++|++++ +.++++.|.. ++.+++|++|+++++. ++ .++. . .+++|++|+++++.
T Consensus 69 ~~~~~-~l~~L~~L~Ls~-N~l~~~~~~~-~~~l~~L~~L~Ls~N~-l~--~lp~-------~--~l~~L~~L~Ls~N~- 132 (562)
T 3a79_B 69 MPDIS-FLSELRVLRLSH-NRIRSLDFHV-FLFNQDLEYLDVSHNR-LQ--NISC-------C--PMASLRHLDLSFND- 132 (562)
T ss_dssp GGGTT-TCTTCCEEECCS-CCCCEECTTT-TTTCTTCCEEECTTSC-CC--EECS-------C--CCTTCSEEECCSSC-
T ss_pred hhhhc-cCCCccEEECCC-CCCCcCCHHH-hCCCCCCCEEECCCCc-CC--ccCc-------c--ccccCCEEECCCCC-
Confidence 34566 777888888877 5677764543 6677788888877653 33 1221 1 46667777776653
Q ss_pred cccccccCccccCCCCccEEEEcCC
Q 020667 95 FTSFCTSNLGILEFPSLKELWISGC 119 (323)
Q Consensus 95 l~~~~~~~~~~~~l~~L~~L~l~~c 119 (323)
+..++.... +..+++|++|+++++
T Consensus 133 l~~l~~p~~-~~~l~~L~~L~L~~n 156 (562)
T 3a79_B 133 FDVLPVCKE-FGNLTKLTFLGLSAA 156 (562)
T ss_dssp CSBCCCCGG-GGGCTTCCEEEEECS
T ss_pred ccccCchHh-hcccCcccEEecCCC
Confidence 444331111 235666666666665
No 51
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.65 E-value=2.2e-16 Score=148.34 Aligned_cols=212 Identities=15% Similarity=0.083 Sum_probs=160.9
Q ss_pred ccccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccc
Q 020667 14 QVTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLE 93 (323)
Q Consensus 14 ~p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 93 (323)
.|..+. .+++|++|+|++ +.+++..| ++.+++|++|++++|. +..+ + ..++|++|+++++
T Consensus 50 ~~~~~~-~l~~L~~L~Ls~-N~l~~~~~---l~~l~~L~~L~Ls~N~-l~~l--~-----------~~~~L~~L~L~~N- 109 (487)
T 3oja_A 50 SAADLA-PFTKLELLNLSS-NVLYETLD---LESLSTLRTLDLNNNY-VQEL--L-----------VGPSIETLHAANN- 109 (487)
T ss_dssp CGGGGT-TCTTCCEEECTT-SCCEEEEE---CTTCTTCCEEECCSSE-EEEE--E-----------ECTTCCEEECCSS-
T ss_pred CHHHHh-CCCCCCEEEeeC-CCCCCCcc---cccCCCCCEEEecCCc-CCCC--C-----------CCCCcCEEECcCC-
Confidence 355677 999999999998 67887644 6899999999999873 4422 1 3479999999987
Q ss_pred ccccccccCccccCCCCccEEEEcCC------chhhhhccCCcceeeecCCCCccccCCCCC-CCCCCCEEEeecCcCcc
Q 020667 94 NFTSFCTSNLGILEFPSLKELWISGC------PKFMERYNRTTNILTERGCDHLVDLVPSST-SFQNLTNLVVSCCKGLK 166 (323)
Q Consensus 94 ~l~~~~~~~~~~~~l~~L~~L~l~~c------p~~~~~l~~L~~L~~i~~~~~l~~l~~~~~-~l~~L~~L~l~~c~~l~ 166 (323)
.+..++.. .+++|+.|++++| |..++.+++|+.| ++.++...+..|..+. .+++|++|++++|. ++
T Consensus 110 ~l~~~~~~-----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~ 182 (487)
T 3oja_A 110 NISRVSCS-----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYL-DLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IY 182 (487)
T ss_dssp CCCCEEEC-----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEE-ECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CC
T ss_pred cCCCCCcc-----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEE-ECCCCCCCCcChHHHhhhCCcccEEecCCCc-cc
Confidence 46666554 5789999999998 3344556777777 5666655554555554 78999999999986 55
Q ss_pred eecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCC
Q 020667 167 IVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDC 246 (323)
Q Consensus 167 ~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c 246 (323)
.++ . ...+++|+.|++++|. +..++ ..+..+++|+.|+++++ .++.+|.. ...+++|+.|++++|
T Consensus 183 ~~~--~-~~~l~~L~~L~Ls~N~-l~~~~--------~~~~~l~~L~~L~Ls~N-~l~~lp~~--l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 183 DVK--G-QVVFAKLKTLDLSSNK-LAFMG--------PEFQSAAGVTWISLRNN-KLVLIEKA--LRFSQNLEHFDLRGN 247 (487)
T ss_dssp EEE--C-CCCCTTCCEEECCSSC-CCEEC--------GGGGGGTTCSEEECTTS-CCCEECTT--CCCCTTCCEEECTTC
T ss_pred ccc--c-cccCCCCCEEECCCCC-CCCCC--------HhHcCCCCccEEEecCC-cCcccchh--hccCCCCCEEEcCCC
Confidence 552 2 3468999999999976 66666 34578899999999995 78888765 367899999999998
Q ss_pred CCC-cccCCCCCCCCCcceeEc
Q 020667 247 PSM-KIFSEGNSSTPKLHEVQW 267 (323)
Q Consensus 247 ~~l-~~lp~~~~~~~~L~~L~l 267 (323)
+.. ..+|..+..+++|+.+++
T Consensus 248 ~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 248 GFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp CBCHHHHHHHHTTCHHHHHHHH
T ss_pred CCcCcchHHHHHhCCCCcEEec
Confidence 766 467776667788887776
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.65 E-value=3.3e-15 Score=131.74 Aligned_cols=203 Identities=19% Similarity=0.140 Sum_probs=148.0
Q ss_pred ccccCCcccEEeeecccccceec--cchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccc
Q 020667 18 MSCGIQNLMHLTLRSCMNLRYLF--SSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENF 95 (323)
Q Consensus 18 ~~~~l~~L~~L~L~~c~~l~~~~--p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 95 (323)
+. .+++|++|++++ +.++.+. |.. +..+++|++|+++++. +. .++..+. .+++|++|+++++ .+
T Consensus 48 ~~-~l~~L~~L~L~~-n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~-i~--~l~~~~~-------~l~~L~~L~l~~n-~l 113 (306)
T 2z66_A 48 FD-KLTQLTKLSLSS-NGLSFKGCCSQS-DFGTTSLKYLDLSFNG-VI--TMSSNFL-------GLEQLEHLDFQHS-NL 113 (306)
T ss_dssp TT-TCTTCSEEECCS-SCCCEEEEEEHH-HHSCSCCCEEECCSCS-EE--EEEEEEE-------TCTTCCEEECTTS-EE
T ss_pred hh-ccccCCEEECCC-CccCcccCcccc-cccccccCEEECCCCc-cc--cChhhcC-------CCCCCCEEECCCC-cc
Confidence 56 899999999998 5676432 343 5679999999999874 33 2232233 7899999999987 45
Q ss_pred ccccccCccccCCCCccEEEEcCCc------hhhhhccCCcceeeecCCCCcc-ccCCCCCCCCCCCEEEeecCcCccee
Q 020667 96 TSFCTSNLGILEFPSLKELWISGCP------KFMERYNRTTNILTERGCDHLV-DLVPSSTSFQNLTNLVVSCCKGLKIV 168 (323)
Q Consensus 96 ~~~~~~~~~~~~l~~L~~L~l~~cp------~~~~~l~~L~~L~~i~~~~~l~-~l~~~~~~l~~L~~L~l~~c~~l~~l 168 (323)
..++.... ...+++|++|++++|. ..+..+++|+.| .+.++...+ .+|..+..+++|++|++++|. ++.+
T Consensus 114 ~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~ 190 (306)
T 2z66_A 114 KQMSEFSV-FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL-KMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQL 190 (306)
T ss_dssp ESSTTTTT-TTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEE-ECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEE
T ss_pred cccccchh-hhhccCCCEEECCCCcCCccchhhcccCcCCCEE-ECCCCccccccchhHHhhCcCCCEEECCCCC-cCCc
Confidence 65554111 3578999999999983 345556777777 566665444 467788899999999999985 5554
Q ss_pred cchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCC-cccEEeecCCC
Q 020667 169 LTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFP-SLERLVLDDCP 247 (323)
Q Consensus 169 ~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~-~L~~L~l~~c~ 247 (323)
. +..+..+++|+.|++++|. +..++ ...+..+++|+.|+++++ .++...... ...++ +|++|++++++
T Consensus 191 ~-~~~~~~l~~L~~L~L~~N~-l~~~~-------~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 191 S-PTAFNSLSSLQVLNMSHNN-FFSLD-------TFPYKCLNSLQVLDYSLN-HIMTSKKQE-LQHFPSSLAFLNLTQND 259 (306)
T ss_dssp C-TTTTTTCTTCCEEECTTSC-CSBCC-------SGGGTTCTTCCEEECTTS-CCCBCSSSS-CCCCCTTCCEEECTTCC
T ss_pred C-HHHhcCCCCCCEEECCCCc-cCccC-------hhhccCcccCCEeECCCC-CCcccCHHH-HHhhhccCCEEEccCCC
Confidence 2 4567889999999999986 44444 123467899999999997 666655443 35564 99999999876
Q ss_pred C
Q 020667 248 S 248 (323)
Q Consensus 248 ~ 248 (323)
.
T Consensus 260 ~ 260 (306)
T 2z66_A 260 F 260 (306)
T ss_dssp E
T ss_pred e
Confidence 4
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.65 E-value=6.6e-16 Score=139.10 Aligned_cols=214 Identities=17% Similarity=0.154 Sum_probs=150.9
Q ss_pred cccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccc
Q 020667 17 VMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFT 96 (323)
Q Consensus 17 ~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 96 (323)
.+. .+++|++|++++ +.++++.|.. ++.+++|++|+++++. ++ .++.. .+..+++|++|+++++ .+.
T Consensus 71 ~~~-~l~~L~~L~L~~-n~l~~~~~~~-~~~l~~L~~L~Ls~n~-l~--~~~~~------~~~~l~~L~~L~L~~n-~l~ 137 (353)
T 2z80_A 71 DLQ-RCVNLQALVLTS-NGINTIEEDS-FSSLGSLEHLDLSYNY-LS--NLSSS------WFKPLSSLTFLNLLGN-PYK 137 (353)
T ss_dssp TTT-TCTTCCEEECTT-SCCCEECTTT-TTTCTTCCEEECCSSC-CS--SCCHH------HHTTCTTCSEEECTTC-CCS
T ss_pred Hhc-cCCCCCEEECCC-CccCccCHhh-cCCCCCCCEEECCCCc-CC--cCCHh------HhCCCccCCEEECCCC-CCc
Confidence 567 899999999998 6788875544 7899999999999874 33 12211 1237899999999987 566
Q ss_pred cccccCccccCCCCccEEEEcCCc-------hhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceec
Q 020667 97 SFCTSNLGILEFPSLKELWISGCP-------KFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVL 169 (323)
Q Consensus 97 ~~~~~~~~~~~l~~L~~L~l~~cp-------~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~ 169 (323)
.++.... +..+++|++|++++|. ..+..+++|+.| ++.++......|..+..+++|++|++++|. ++.++
T Consensus 138 ~l~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~ 214 (353)
T 2z80_A 138 TLGETSL-FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL-EIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLL 214 (353)
T ss_dssp SSCSSCS-CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE-EEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHH
T ss_pred ccCchhh-hccCCCCcEEECCCCccccccCHHHccCCCCCCEE-ECCCCCcCccCHHHHhccccCCeecCCCCc-cccch
Confidence 6766111 3579999999999983 233445555555 466766555557788899999999999986 45442
Q ss_pred chhHHhccccccEEEEccCcccceeeecc-----------------Ccc-------cccccccccccCeeecccccccce
Q 020667 170 TFSIAKTLVRLEYMEIESCDRITEIVLVD-----------------DVA-------AKDEVITFRELKELKLLNLESLTS 225 (323)
Q Consensus 170 ~~~~l~~l~~L~~L~l~~c~~l~~i~~~~-----------------~~~-------~~~~~~~~~~L~~L~l~~c~~L~~ 225 (323)
...+..+++|+.|++++|.. ..++... ... ....+..+++|+.|+++++ +++.
T Consensus 215 -~~~~~~~~~L~~L~L~~n~l-~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~ 291 (353)
T 2z80_A 215 -EIFVDVTSSVECLELRDTDL-DTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKS 291 (353)
T ss_dssp -HHHHHHTTTEEEEEEESCBC-TTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCC
T ss_pred -hhhhhhcccccEEECCCCcc-ccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCc
Confidence 23456689999999998763 3222100 000 0112356889999999996 7888
Q ss_pred ecCCCccccCCcccEEeecCCCCCc
Q 020667 226 FCSGNCAFKFPSLERLVLDDCPSMK 250 (323)
Q Consensus 226 l~~~~~~~~l~~L~~L~l~~c~~l~ 250 (323)
++... +..+++|++|++++++...
T Consensus 292 i~~~~-~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 292 VPDGI-FDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CCTTT-TTTCTTCCEEECCSSCBCC
T ss_pred cCHHH-HhcCCCCCEEEeeCCCccC
Confidence 87643 3578999999999987543
No 54
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.65 E-value=3.3e-15 Score=141.31 Aligned_cols=129 Identities=12% Similarity=0.114 Sum_probs=78.4
Q ss_pred ccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceec-chhHHhccccccEEEEccCcccceeeeccCccccc
Q 020667 126 YNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVL-TFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKD 204 (323)
Q Consensus 126 l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~ 204 (323)
+++|+.| ++.++...+.+|..+..+++|++|++++|. ++.++ .+..+..+++|++|++++|.....++..
T Consensus 323 l~~L~~L-~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~------- 393 (520)
T 2z7x_B 323 ISPFLHL-DFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG------- 393 (520)
T ss_dssp CCCCCEE-ECCSSCCCTTTTTTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC-------
T ss_pred CCcccEE-EeECCccChhhhhhhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCcCCcccccc-------
Confidence 3445555 466666555577788889999999999886 44331 1345788999999999987744335521
Q ss_pred cccccc----------------------ccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCC-CCCCCC
Q 020667 205 EVITFR----------------------ELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEG-NSSTPK 261 (323)
Q Consensus 205 ~~~~~~----------------------~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~ 261 (323)
.+..++ +|+.|+++++ +++.++... ..+++|++|++++| .++.+|.. +..+++
T Consensus 394 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~--~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~ 469 (520)
T 2z7x_B 394 DCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQV--VKLEALQELNVASN-QLKSVPDGIFDRLTS 469 (520)
T ss_dssp SCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGG--GGCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred hhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhh--hcCCCCCEEECCCC-cCCccCHHHhccCCc
Confidence 112334 5555555554 444444332 35666666666664 44456654 445666
Q ss_pred cceeEc
Q 020667 262 LHEVQW 267 (323)
Q Consensus 262 L~~L~l 267 (323)
|++|++
T Consensus 470 L~~L~l 475 (520)
T 2z7x_B 470 LQKIWL 475 (520)
T ss_dssp CCEEEC
T ss_pred ccEEEC
Confidence 666666
No 55
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.65 E-value=1.5e-15 Score=131.86 Aligned_cols=212 Identities=15% Similarity=0.181 Sum_probs=150.1
Q ss_pred ccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccccc
Q 020667 18 MSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTS 97 (323)
Q Consensus 18 ~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 97 (323)
.. .+++|++|++.+ +.++.+ +. ++.+++|++|+++++. +..+ +.+..+++|++|+++++ .+..
T Consensus 37 ~~-~l~~L~~L~l~~-~~i~~~-~~--l~~l~~L~~L~l~~n~-l~~~----------~~l~~l~~L~~L~L~~n-~l~~ 99 (272)
T 3rfs_A 37 QN-ELNSIDQIIANN-SDIKSV-QG--IQYLPNVRYLALGGNK-LHDI----------SALKELTNLTYLILTGN-QLQS 99 (272)
T ss_dssp HH-HHTTCCEEECTT-SCCCCC-TT--GGGCTTCCEEECTTSC-CCCC----------GGGTTCTTCCEEECTTS-CCCC
T ss_pred cc-cccceeeeeeCC-CCcccc-cc--cccCCCCcEEECCCCC-CCCc----------hhhcCCCCCCEEECCCC-ccCc
Confidence 44 688888898888 456653 44 6788889999888875 3311 12337888899998887 4666
Q ss_pred ccccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCC-CCCCCCCCCEEEeecCcCcceecchhHHhc
Q 020667 98 FCTSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVP-SSTSFQNLTNLVVSCCKGLKIVLTFSIAKT 176 (323)
Q Consensus 98 ~~~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~ 176 (323)
++... ...+++|++|++++|. +..+++ .+..+++|++|++++|. ++.++ +..+..
T Consensus 100 ~~~~~--~~~l~~L~~L~L~~n~--------------------l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~ 155 (272)
T 3rfs_A 100 LPNGV--FDKLTNLKELVLVENQ--------------------LQSLPDGVFDKLTNLTYLNLAHNQ-LQSLP-KGVFDK 155 (272)
T ss_dssp CCTTT--TTTCTTCCEEECTTSC--------------------CCCCCTTTTTTCTTCCEEECCSSC-CCCCC-TTTTTT
T ss_pred cChhH--hcCCcCCCEEECCCCc--------------------CCccCHHHhccCCCCCEEECCCCc-cCccC-HHHhcc
Confidence 65543 2467888888887762 122323 35678899999999884 55553 344678
Q ss_pred cccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCC
Q 020667 177 LVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGN 256 (323)
Q Consensus 177 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~ 256 (323)
+++|+.|++++|. +..++ ...+..+++|+.|+++++ .++.++... +..+++|++|++++|+..
T Consensus 156 l~~L~~L~l~~n~-l~~~~-------~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~l~~N~~~------- 218 (272)
T 3rfs_A 156 LTNLTELDLSYNQ-LQSLP-------EGVFDKLTQLKDLRLYQN-QLKSVPDGV-FDRLTSLQYIWLHDNPWD------- 218 (272)
T ss_dssp CTTCCEEECCSSC-CCCCC-------TTTTTTCTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEEECCSSCBC-------
T ss_pred CccCCEEECCCCC-cCccC-------HHHhcCCccCCEEECCCC-cCCccCHHH-HhCCcCCCEEEccCCCcc-------
Confidence 8999999999885 55554 123457899999999996 677776643 467899999999988644
Q ss_pred CCCCCcceeEccCccccccccchhhhceeeeccc
Q 020667 257 SSTPKLHEVQWPGEARWAWKDDLNTTIQKVIFPA 290 (323)
Q Consensus 257 ~~~~~L~~L~l~~~~~~~~~~~l~~~l~~l~~~~ 290 (323)
+.+++|+.+++ ..+.+.|.+|.++..+....
T Consensus 219 ~~~~~l~~l~~---~~n~~~g~ip~~~~~~~~~~ 249 (272)
T 3rfs_A 219 CTCPGIRYLSE---WINKHSGVVRNSAGSVAPDS 249 (272)
T ss_dssp CCTTTTHHHHH---HHHHTGGGBBCTTSCBCGGG
T ss_pred ccCcHHHHHHH---HHHhCCCcccCcccccCCCC
Confidence 25678888888 66778888888887666543
No 56
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.65 E-value=3.8e-15 Score=142.43 Aligned_cols=143 Identities=13% Similarity=0.124 Sum_probs=84.6
Q ss_pred ccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecc-hhHHhccccccEEEEccCcccceeeecc------
Q 020667 126 YNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLT-FSIAKTLVRLEYMEIESCDRITEIVLVD------ 198 (323)
Q Consensus 126 l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~l~~l~~L~~L~l~~c~~l~~i~~~~------ 198 (323)
++++++| ++.++...+..|..+..+++|++|++++|. ++.++. +..+.++++|+.|++++|.....++...
T Consensus 352 l~~L~~L-~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 352 PSSFTFL-NFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp CCCCCEE-ECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred CCCceEE-ECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 3444454 455555555566677788888888888874 444321 2346778888888888776433244210
Q ss_pred --------Ccccccccccc-cccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCC-CCCCCCcceeEcc
Q 020667 199 --------DVAAKDEVITF-RELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEG-NSSTPKLHEVQWP 268 (323)
Q Consensus 199 --------~~~~~~~~~~~-~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~L~~L~l~ 268 (323)
+.........+ ++|+.|+++++ +++.++... ..+++|++|++++| .++.+|.. +..+++|+.|++
T Consensus 430 L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~--~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l- 504 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDV--THLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWL- 504 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTT--TSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEEC-
T ss_pred CCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhh--cCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEe-
Confidence 00000000122 46777777775 666666544 46777788888764 45667776 566777788877
Q ss_pred Ccccccccc
Q 020667 269 GEARWAWKD 277 (323)
Q Consensus 269 ~~~~~~~~~ 277 (323)
..+.|.+
T Consensus 505 --~~N~~~c 511 (562)
T 3a79_B 505 --HDNPWDC 511 (562)
T ss_dssp --CSCCBCC
T ss_pred --cCCCcCC
Confidence 4444444
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.64 E-value=2e-16 Score=140.43 Aligned_cols=212 Identities=15% Similarity=0.082 Sum_probs=158.0
Q ss_pred cccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccc
Q 020667 15 VTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLEN 94 (323)
Q Consensus 15 p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 94 (323)
|..+. .+++|++|++++ +.+++.. + +..+++|++|+++++. ++.+ + ..++|++|+++++ .
T Consensus 51 ~~~~~-~l~~L~~L~Ls~-n~l~~~~-~--~~~l~~L~~L~Ls~n~-l~~l--~-----------~~~~L~~L~l~~n-~ 110 (317)
T 3o53_A 51 AADLA-PFTKLELLNLSS-NVLYETL-D--LESLSTLRTLDLNNNY-VQEL--L-----------VGPSIETLHAANN-N 110 (317)
T ss_dssp HHHHT-TCTTCCEEECTT-SCCEEEE-E--ETTCTTCCEEECCSSE-EEEE--E-----------ECTTCCEEECCSS-C
T ss_pred HHHhh-CCCcCCEEECCC-CcCCcch-h--hhhcCCCCEEECcCCc-cccc--c-----------CCCCcCEEECCCC-c
Confidence 45677 999999999998 6788764 3 6899999999999874 3322 1 4578999999887 4
Q ss_pred cccccccCccccCCCCccEEEEcCCc------hhhhhccCCcceeeecCCCCccccCCCC-CCCCCCCEEEeecCcCcce
Q 020667 95 FTSFCTSNLGILEFPSLKELWISGCP------KFMERYNRTTNILTERGCDHLVDLVPSS-TSFQNLTNLVVSCCKGLKI 167 (323)
Q Consensus 95 l~~~~~~~~~~~~l~~L~~L~l~~cp------~~~~~l~~L~~L~~i~~~~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~ 167 (323)
+..++.. .+++|++|++++|. ..+..+++|+.| ++.++......+..+ ..+++|++|++++|. ++.
T Consensus 111 l~~~~~~-----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~ 183 (317)
T 3o53_A 111 ISRVSCS-----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYL-DLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYD 183 (317)
T ss_dssp CSEEEEC-----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEE-ECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCE
T ss_pred cCCcCcc-----ccCCCCEEECCCCCCCCccchhhhccCCCCEE-ECCCCCCCcccHHHHhhccCcCCEEECCCCc-Ccc
Confidence 6665544 57889999999882 234446666666 466654433333333 368999999999986 555
Q ss_pred ecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCC
Q 020667 168 VLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCP 247 (323)
Q Consensus 168 l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~ 247 (323)
++ . ...+++|+.|++++|. +..++ ..+..+++|+.|+++++ .++.++.. ...+++|++|++++++
T Consensus 184 ~~--~-~~~l~~L~~L~Ls~N~-l~~l~--------~~~~~l~~L~~L~L~~N-~l~~l~~~--~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 184 VK--G-QVVFAKLKTLDLSSNK-LAFMG--------PEFQSAAGVTWISLRNN-KLVLIEKA--LRFSQNLEHFDLRGNG 248 (317)
T ss_dssp EE--C-CCCCTTCCEEECCSSC-CCEEC--------GGGGGGTTCSEEECTTS-CCCEECTT--CCCCTTCCEEECTTCC
T ss_pred cc--c-ccccccCCEEECCCCc-CCcch--------hhhcccCcccEEECcCC-cccchhhH--hhcCCCCCEEEccCCC
Confidence 52 2 3358999999999975 66665 33568899999999996 78888764 3678999999999987
Q ss_pred CC-cccCCCCCCCCCcceeEcc
Q 020667 248 SM-KIFSEGNSSTPKLHEVQWP 268 (323)
Q Consensus 248 ~l-~~lp~~~~~~~~L~~L~l~ 268 (323)
.. ..+|..+..+++|+.+++.
T Consensus 249 ~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 249 FHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CBHHHHHHHHHTCHHHHHHHHH
T ss_pred ccCcCHHHHHhccccceEEECC
Confidence 76 5777777788889988884
No 58
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.64 E-value=8.1e-15 Score=128.46 Aligned_cols=199 Identities=19% Similarity=0.189 Sum_probs=152.3
Q ss_pred ccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccccc
Q 020667 18 MSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTS 97 (323)
Q Consensus 18 ~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 97 (323)
+. ++++++++++++ ++++.+ |.. -.++++.|+++++. +..+ .+.. +..+++|++|+++++ .+..
T Consensus 6 ~~-~l~~l~~l~~~~-~~l~~i-p~~---~~~~l~~L~L~~N~-l~~~-~~~~-------~~~l~~L~~L~L~~n-~l~~ 69 (290)
T 1p9a_G 6 VS-KVASHLEVNCDK-RNLTAL-PPD---LPKDTTILHLSENL-LYTF-SLAT-------LMPYTRLTQLNLDRA-ELTK 69 (290)
T ss_dssp EE-CSTTCCEEECTT-SCCSSC-CSC---CCTTCCEEECTTSC-CSEE-EGGG-------GTTCTTCCEEECTTS-CCCE
T ss_pred cc-ccCCccEEECCC-CCCCcC-CCC---CCCCCCEEEcCCCc-CCcc-CHHH-------hhcCCCCCEEECCCC-ccCc
Confidence 55 899999999998 778875 654 24789999999876 3422 1222 237899999999987 5666
Q ss_pred ccccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhcc
Q 020667 98 FCTSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTL 177 (323)
Q Consensus 98 ~~~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l 177 (323)
++.. ..+++|++|+++++. +..+|..+..+++|++|++++|. ++.++ +..+.++
T Consensus 70 ~~~~----~~l~~L~~L~Ls~N~--------------------l~~l~~~~~~l~~L~~L~l~~N~-l~~l~-~~~~~~l 123 (290)
T 1p9a_G 70 LQVD----GTLPVLGTLDLSHNQ--------------------LQSLPLLGQTLPALTVLDVSFNR-LTSLP-LGALRGL 123 (290)
T ss_dssp EECC----SCCTTCCEEECCSSC--------------------CSSCCCCTTTCTTCCEEECCSSC-CCCCC-SSTTTTC
T ss_pred ccCC----CCCCcCCEEECCCCc--------------------CCcCchhhccCCCCCEEECCCCc-CcccC-HHHHcCC
Confidence 6654 378999999998862 22455567788999999999885 55553 3457889
Q ss_pred ccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCC
Q 020667 178 VRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNS 257 (323)
Q Consensus 178 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~ 257 (323)
++|++|++++|. +..++ ...+..+++|+.|+++++ +++.++... +..+++|++|++++ +.++.+|.++.
T Consensus 124 ~~L~~L~L~~N~-l~~~~-------~~~~~~l~~L~~L~L~~N-~l~~l~~~~-~~~l~~L~~L~L~~-N~l~~ip~~~~ 192 (290)
T 1p9a_G 124 GELQELYLKGNE-LKTLP-------PGLLTPTPKLEKLSLANN-NLTELPAGL-LNGLENLDTLLLQE-NSLYTIPKGFF 192 (290)
T ss_dssp TTCCEEECTTSC-CCCCC-------TTTTTTCTTCCEEECTTS-CCSCCCTTT-TTTCTTCCEEECCS-SCCCCCCTTTT
T ss_pred CCCCEEECCCCC-CCccC-------hhhcccccCCCEEECCCC-cCCccCHHH-hcCcCCCCEEECCC-CcCCccChhhc
Confidence 999999999875 55665 123457899999999995 788887754 45689999999988 46789999998
Q ss_pred CCCCcceeEccC
Q 020667 258 STPKLHEVQWPG 269 (323)
Q Consensus 258 ~~~~L~~L~l~~ 269 (323)
..++|+.+++.|
T Consensus 193 ~~~~L~~l~L~~ 204 (290)
T 1p9a_G 193 GSHLLPFAFLHG 204 (290)
T ss_dssp TTCCCSEEECCS
T ss_pred ccccCCeEEeCC
Confidence 899999999954
No 59
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.64 E-value=6.1e-15 Score=137.45 Aligned_cols=40 Identities=8% Similarity=0.155 Sum_probs=25.6
Q ss_pred cccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecC
Q 020667 15 VTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVEC 59 (323)
Q Consensus 15 p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c 59 (323)
+..+. .+++|++|++++ +.++++ |. ++.+++|++|+++++
T Consensus 35 ~~~~~-~l~~L~~L~Ls~-n~l~~~-~~--l~~l~~L~~L~Ls~n 74 (457)
T 3bz5_A 35 TISEE-QLATLTSLDCHN-SSITDM-TG--IEKLTGLTKLICTSN 74 (457)
T ss_dssp EEEHH-HHTTCCEEECCS-SCCCCC-TT--GGGCTTCSEEECCSS
T ss_pred ccChh-HcCCCCEEEccC-CCcccC-hh--hcccCCCCEEEccCC
Confidence 33455 677777777776 456664 53 567777777777655
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.64 E-value=6.7e-15 Score=128.45 Aligned_cols=196 Identities=15% Similarity=0.135 Sum_probs=142.9
Q ss_pred cEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccCccc
Q 020667 26 MHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSNLGI 105 (323)
Q Consensus 26 ~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 105 (323)
++++.++ .+++.+ |.. ..++|++|+++++. +. .++. ..+..+++|++|+++++ .+..+.... +
T Consensus 14 ~~~~c~~-~~l~~i-p~~---~~~~l~~L~l~~n~-i~--~~~~------~~~~~~~~L~~L~l~~n-~l~~~~~~~--~ 76 (285)
T 1ozn_A 14 VTTSCPQ-QGLQAV-PVG---IPAASQRIFLHGNR-IS--HVPA------ASFRACRNLTILWLHSN-VLARIDAAA--F 76 (285)
T ss_dssp CEEECCS-SCCSSC-CTT---CCTTCSEEECTTSC-CC--EECT------TTTTTCTTCCEEECCSS-CCCEECTTT--T
T ss_pred eEEEcCc-CCcccC-CcC---CCCCceEEEeeCCc-CC--ccCH------HHcccCCCCCEEECCCC-ccceeCHhh--c
Confidence 5677776 667764 653 46799999999875 44 2221 12337899999999987 466664332 3
Q ss_pred cCCCCccEEEEcCCchhhhhccCCcceeeecCCCCcccc-CCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEE
Q 020667 106 LEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDL-VPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYME 184 (323)
Q Consensus 106 ~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~ 184 (323)
..+++|++|++++|+ .+..+ +..+..+++|++|++++|. ++.+. +..+.++++|++|+
T Consensus 77 ~~l~~L~~L~l~~n~-------------------~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~ 135 (285)
T 1ozn_A 77 TGLALLEQLDLSDNA-------------------QLRSVDPATFHGLGRLHTLHLDRCG-LQELG-PGLFRGLAALQYLY 135 (285)
T ss_dssp TTCTTCCEEECCSCT-------------------TCCCCCTTTTTTCTTCCEEECTTSC-CCCCC-TTTTTTCTTCCEEE
T ss_pred CCccCCCEEeCCCCC-------------------CccccCHHHhcCCcCCCEEECCCCc-CCEEC-HhHhhCCcCCCEEE
Confidence 478999999988763 12223 3456788999999999986 44442 44578899999999
Q ss_pred EccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCCCCCCcce
Q 020667 185 IESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHE 264 (323)
Q Consensus 185 l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~ 264 (323)
+++|. +..++ ...+..+++|++|+++++ +++.++... +..+++|++|++++|...+..|..+..+++|++
T Consensus 136 l~~n~-l~~~~-------~~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 205 (285)
T 1ozn_A 136 LQDNA-LQALP-------DDTFRDLGNLTHLFLHGN-RISSVPERA-FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205 (285)
T ss_dssp CCSSC-CCCCC-------TTTTTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CCCCc-ccccC-------HhHhccCCCccEEECCCC-cccccCHHH-hcCccccCEEECCCCcccccCHhHccCcccccE
Confidence 99975 45554 123467899999999996 788887653 467899999999997655556888889999999
Q ss_pred eEccC
Q 020667 265 VQWPG 269 (323)
Q Consensus 265 L~l~~ 269 (323)
|++.+
T Consensus 206 L~l~~ 210 (285)
T 1ozn_A 206 LYLFA 210 (285)
T ss_dssp EECCS
T ss_pred eeCCC
Confidence 99944
No 61
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.63 E-value=7e-15 Score=143.57 Aligned_cols=226 Identities=15% Similarity=0.164 Sum_probs=116.0
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccC
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSN 102 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 102 (323)
+++++|++++ +.++++ |...++.+++|++|+++++..-. . .+..+..+++|++|+++++ .+..++...
T Consensus 25 ~~l~~L~Ls~-n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~--~-------~~~~~~~l~~L~~L~L~~n-~l~~l~~~~ 92 (680)
T 1ziw_A 25 TNITVLNLTH-NQLRRL-PAANFTRYSQLTSLDVGFNTISK--L-------EPELCQKLPMLKVLNLQHN-ELSQLSDKT 92 (680)
T ss_dssp TTCSEEECCS-SCCCCC-CGGGGGGGTTCSEEECCSSCCCC--C-------CTTHHHHCTTCCEEECCSS-CCCCCCTTT
T ss_pred CCCcEEECCC-CCCCCc-CHHHHhCCCcCcEEECCCCccCc--c-------CHHHHhcccCcCEEECCCC-ccCccChhh
Confidence 5677777776 456664 33335667777777777653211 1 1112225666666666665 345554432
Q ss_pred ccccCCCCccEEEEcCC------chhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHH--
Q 020667 103 LGILEFPSLKELWISGC------PKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIA-- 174 (323)
Q Consensus 103 ~~~~~l~~L~~L~l~~c------p~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l-- 174 (323)
+..+++|++|++++| |..++.+++|++| ++.+|......+..+..+++|++|++++|. ++.+. +..+
T Consensus 93 --~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L-~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~ 167 (680)
T 1ziw_A 93 --FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL-DLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALK-SEELDI 167 (680)
T ss_dssp --TTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEE-ECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBC-HHHHGG
T ss_pred --hccCCCCCEEECCCCccCccChhHccccCCCCEE-ECCCCcccccCchhhcccccCCEEEccCCc-ccccC-HHHhhc
Confidence 235666666666665 2334445555555 455554433334445566666666666654 33321 2222
Q ss_pred hccccccEEEEccCcccceeeec-----------------------------------------cCc---ccccccccc-
Q 020667 175 KTLVRLEYMEIESCDRITEIVLV-----------------------------------------DDV---AAKDEVITF- 209 (323)
Q Consensus 175 ~~l~~L~~L~l~~c~~l~~i~~~-----------------------------------------~~~---~~~~~~~~~- 209 (323)
..+++|+.|++++|. +..++.. ... .....+..+
T Consensus 168 ~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~ 246 (680)
T 1ziw_A 168 FANSSLKKLELSSNQ-IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK 246 (680)
T ss_dssp GTTCEESEEECTTCC-CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGG
T ss_pred cccccccEEECCCCc-ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccC
Confidence 233566666666553 2222110 000 000111222
Q ss_pred -cccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEcc
Q 020667 210 -RELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQWP 268 (323)
Q Consensus 210 -~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~ 268 (323)
++|+.|+++++ .++.++... +..+++|++|++++|...+..|..+..+++|+.|++.
T Consensus 247 ~~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 304 (680)
T 1ziw_A 247 WTNLTMLDLSYN-NLNVVGNDS-FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304 (680)
T ss_dssp GSCCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECT
T ss_pred cCCCCEEECCCC-CcCccCccc-ccCcccccEeeCCCCccCccChhhhcCCCCccEEecc
Confidence 23666666664 455554332 3556777777777765555556566677777777774
No 62
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.63 E-value=9.8e-15 Score=146.01 Aligned_cols=127 Identities=17% Similarity=0.132 Sum_probs=87.3
Q ss_pred CCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccc-cc
Q 020667 22 IQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSF-CT 100 (323)
Q Consensus 22 l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~ 100 (323)
.++|++|+|++ +.++++.|.. +.++++|++|++++|.... .+. +..+..+++|++|+++++. +..+ +.
T Consensus 23 p~~l~~LdLs~-N~i~~i~~~~-~~~l~~L~~LdLs~n~~~~--~i~------~~~f~~L~~L~~L~Ls~N~-l~~~~p~ 91 (844)
T 3j0a_A 23 LNTTERLLLSF-NYIRTVTASS-FPFLEQLQLLELGSQYTPL--TID------KEAFRNLPNLRILDLGSSK-IYFLHPD 91 (844)
T ss_dssp CTTCCEEEEES-CCCCEECSSS-CSSCCSCSEEEECTTCCCC--EEC------TTTTSSCTTCCEEECTTCC-CCEECTT
T ss_pred CCCcCEEECCC-CcCCccChhH-CcccccCeEEeCCCCCCcc--ccC------HHHhcCCCCCCEEECCCCc-CcccCHh
Confidence 58999999998 6788876655 7899999999999986554 221 1223378888888888874 4444 33
Q ss_pred cCccccCCCCccEEEEcCCc------h--hhhhccCCcceeeecCCCCccccC-CCCCCCCCCCEEEeecCc
Q 020667 101 SNLGILEFPSLKELWISGCP------K--FMERYNRTTNILTERGCDHLVDLV-PSSTSFQNLTNLVVSCCK 163 (323)
Q Consensus 101 ~~~~~~~l~~L~~L~l~~cp------~--~~~~l~~L~~L~~i~~~~~l~~l~-~~~~~l~~L~~L~l~~c~ 163 (323)
. +..+++|++|++++|. . .+..+++|++| ++.++...+..+ ..+.++++|++|++++|.
T Consensus 92 ~---~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L-~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 92 A---FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL-DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp S---SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEE-EEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred H---ccCCcccCEeeCcCCCCCcccccCccccccCCCCEE-ECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence 3 3478888888888872 1 13445566666 456654433322 346778888888888774
No 63
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.63 E-value=1.7e-14 Score=134.69 Aligned_cols=220 Identities=16% Similarity=0.228 Sum_probs=115.6
Q ss_pred ccccCCcccEEeeecccccceeccchhHhcCCCccEEEEe----------cCCCCceEEeeccccccCCCccccCCcCEE
Q 020667 18 MSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIV----------ECPVLKELIVMDNQEERKNNNVMFPQLQYL 87 (323)
Q Consensus 18 ~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls----------~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L 87 (323)
+. .+++|++|++++ +.++++ +. ++.+++|+.|+++ +++.++.+.+..+.-...+.+..+++|++|
T Consensus 130 ~~-~l~~L~~L~l~~-n~l~~~-~~--~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L 204 (466)
T 1o6v_A 130 LK-NLTNLNRLELSS-NTISDI-SA--LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 204 (466)
T ss_dssp GT-TCTTCSEEEEEE-EEECCC-GG--GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred Hc-CCCCCCEEECCC-CccCCC-hh--hccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEE
Confidence 55 788888888887 345553 43 4556666666554 234444444433321111234456666666
Q ss_pred ecccccccccccccCccccCCCCccEEEEcCCc----hhhhhccCCcceeeecCCC---------------------Ccc
Q 020667 88 KMFNLENFTSFCTSNLGILEFPSLKELWISGCP----KFMERYNRTTNILTERGCD---------------------HLV 142 (323)
Q Consensus 88 ~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp----~~~~~l~~L~~L~~i~~~~---------------------~l~ 142 (323)
+++++. +..++.. ..+++|++|++++|. ..+..+++|+.| ++.+|. .+.
T Consensus 205 ~l~~n~-l~~~~~~----~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L-~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~ 278 (466)
T 1o6v_A 205 IATNNQ-ISDITPL----GILTNLDELSLNGNQLKDIGTLASLTNLTDL-DLANNQISNLAPLSGLTKLTELKLGANQIS 278 (466)
T ss_dssp ECCSSC-CCCCGGG----GGCTTCCEEECCSSCCCCCGGGGGCTTCSEE-ECCSSCCCCCGGGTTCTTCSEEECCSSCCC
T ss_pred EecCCc-ccccccc----cccCCCCEEECCCCCcccchhhhcCCCCCEE-ECCCCccccchhhhcCCCCCEEECCCCccC
Confidence 666653 3332221 235555555555552 112223333333 222222 222
Q ss_pred ccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccc
Q 020667 143 DLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLES 222 (323)
Q Consensus 143 ~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 222 (323)
.+++ +..+++|+.|++++|. ++.++ . +..+++|+.|++++|. +..++ .+..+++|+.|++++| .
T Consensus 279 ~~~~-~~~l~~L~~L~L~~n~-l~~~~--~-~~~l~~L~~L~L~~n~-l~~~~---------~~~~l~~L~~L~l~~n-~ 342 (466)
T 1o6v_A 279 NISP-LAGLTALTNLELNENQ-LEDIS--P-ISNLKNLTYLTLYFNN-ISDIS---------PVSSLTKLQRLFFYNN-K 342 (466)
T ss_dssp CCGG-GTTCTTCSEEECCSSC-CSCCG--G-GGGCTTCSEEECCSSC-CSCCG---------GGGGCTTCCEEECCSS-C
T ss_pred cccc-ccCCCccCeEEcCCCc-ccCch--h-hcCCCCCCEEECcCCc-CCCch---------hhccCccCCEeECCCC-c
Confidence 2322 4455556666665553 33331 1 4556666666666653 33322 1346777777777776 5
Q ss_pred cceecCCCccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEccC
Q 020667 223 LTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQWPG 269 (323)
Q Consensus 223 L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~ 269 (323)
++.++ ....+++|++|++++|+..+..| +..+++|+.|++.+
T Consensus 343 l~~~~---~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~ 384 (466)
T 1o6v_A 343 VSDVS---SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 384 (466)
T ss_dssp CCCCG---GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCC
T ss_pred cCCch---hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccC
Confidence 65553 23567888888887776544444 55778888888844
No 64
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.62 E-value=1.1e-14 Score=135.57 Aligned_cols=57 Identities=21% Similarity=0.217 Sum_probs=35.3
Q ss_pred cccccCeeecccccccceecCCC------ccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEc
Q 020667 208 TFRELKELKLLNLESLTSFCSGN------CAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQW 267 (323)
Q Consensus 208 ~~~~L~~L~l~~c~~L~~l~~~~------~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l 267 (323)
.+++|+.|++++|..+..++... ....+++|++|+++++ .++.++ +..+++|+.|++
T Consensus 284 ~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l 346 (457)
T 3bz5_A 284 GCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSC 346 (457)
T ss_dssp TCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEEC
T ss_pred ccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEEC
Confidence 45677777777776555554321 1234566777777664 344453 667888888888
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.62 E-value=8.2e-16 Score=136.19 Aligned_cols=52 Identities=17% Similarity=0.121 Sum_probs=25.0
Q ss_pred ccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEc
Q 020667 209 FRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQW 267 (323)
Q Consensus 209 ~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l 267 (323)
+++|++|+++++ +++.++... .++|++|+++++ .++.+|. +..+++|++|++
T Consensus 252 l~~L~~L~Ls~N-~l~~ip~~~----~~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L 303 (312)
T 1wwl_A 252 PSQLNSLNLSFT-GLKQVPKGL----PAKLSVLDLSYN-RLDRNPS-PDELPQVGNLSL 303 (312)
T ss_dssp CTTCCEEECTTS-CCSSCCSSC----CSEEEEEECCSS-CCCSCCC-TTTSCEEEEEEC
T ss_pred cCCCCEEECCCC-ccChhhhhc----cCCceEEECCCC-CCCCChh-HhhCCCCCEEec
Confidence 455555555553 444444322 145555555443 3444444 445555555555
No 66
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.58 E-value=2.1e-14 Score=133.69 Aligned_cols=232 Identities=15% Similarity=0.084 Sum_probs=110.9
Q ss_pred cccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCC-----------CCceEEeeccc-cccCCCccccCCc
Q 020667 17 VMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECP-----------VLKELIVMDNQ-EERKNNNVMFPQL 84 (323)
Q Consensus 17 ~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~-----------~l~~l~~~~~~-~~~~~~~~~l~~L 84 (323)
++. .+++|++|++++ +.++++ |.. .++|++|+++++. .++.+.+..+. ...+. ..++|
T Consensus 148 ~~~-~l~~L~~L~l~~-N~l~~l-p~~----~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~---~~~~L 217 (454)
T 1jl5_A 148 ELQ-NSSFLKIIDVDN-NSLKKL-PDL----PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPD---LPLSL 217 (454)
T ss_dssp CCT-TCTTCCEEECCS-SCCSCC-CCC----CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCC---CCTTC
T ss_pred ccC-CCCCCCEEECCC-CcCccc-CCC----cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCC---CcCcc
Confidence 466 788888888887 466663 542 2467777666542 22222222211 11111 22466
Q ss_pred CEEecccccccccccccCccccCCCCccEEEEcCCchh--hhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecC
Q 020667 85 QYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCPKF--MERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCC 162 (323)
Q Consensus 85 ~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp~~--~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c 162 (323)
++|+++++ .+..++. +..+++|++|++++|.-. -..+++++.| ++.+|. +..+|.. +++|++|++++|
T Consensus 218 ~~L~l~~n-~l~~lp~----~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L-~l~~N~-l~~l~~~---~~~L~~L~ls~N 287 (454)
T 1jl5_A 218 ESIVAGNN-ILEELPE----LQNLPFLTTIYADNNLLKTLPDLPPSLEAL-NVRDNY-LTDLPEL---PQSLTFLDVSEN 287 (454)
T ss_dssp CEEECCSS-CCSSCCC----CTTCTTCCEEECCSSCCSSCCSCCTTCCEE-ECCSSC-CSCCCCC---CTTCCEEECCSS
T ss_pred cEEECcCC-cCCcccc----cCCCCCCCEEECCCCcCCcccccccccCEE-ECCCCc-ccccCcc---cCcCCEEECcCC
Confidence 77777666 4445552 246788888888877210 0112445555 344432 3334432 356666666665
Q ss_pred cCcceecc-hhH-------------Hhcc-ccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceec
Q 020667 163 KGLKIVLT-FSI-------------AKTL-VRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFC 227 (323)
Q Consensus 163 ~~l~~l~~-~~~-------------l~~l-~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~ 227 (323)
. ++.++. +.. +..+ ++|+.|++++|. +..++ ..+++|+.|+++++ +++.++
T Consensus 288 ~-l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~-l~~lp-----------~~~~~L~~L~L~~N-~l~~lp 353 (454)
T 1jl5_A 288 I-FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK-LIELP-----------ALPPRLERLIASFN-HLAEVP 353 (454)
T ss_dssp C-CSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSC-CSCCC-----------CCCTTCCEEECCSS-CCSCCC
T ss_pred c-cCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCc-ccccc-----------ccCCcCCEEECCCC-cccccc
Confidence 3 333210 000 0111 355566665543 33343 23678889998886 677776
Q ss_pred CCCccccCCcccEEeecCCCCCc--ccCCCCCCC-------------CCcceeEccCcccccccc--chhhhceeeeccc
Q 020667 228 SGNCAFKFPSLERLVLDDCPSMK--IFSEGNSST-------------PKLHEVQWPGEARWAWKD--DLNTTIQKVIFPA 290 (323)
Q Consensus 228 ~~~~~~~l~~L~~L~l~~c~~l~--~lp~~~~~~-------------~~L~~L~l~~~~~~~~~~--~l~~~l~~l~~~~ 290 (323)
. .+++|++|++++|+..+ .+|.++..+ ++|+.|++ +.+.+.+ .+|.+++.+.+.+
T Consensus 354 ~-----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~l---s~N~l~~~~~iP~sl~~L~~~~ 425 (454)
T 1jl5_A 354 E-----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHV---ETNPLREFPDIPESVEDLRMNS 425 (454)
T ss_dssp C-----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------------------------
T ss_pred c-----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEEC---CCCcCCccccchhhHhheeCcC
Confidence 5 37889999998876655 677777655 78999999 5566665 8888888887765
No 67
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.58 E-value=1.6e-15 Score=135.34 Aligned_cols=231 Identities=14% Similarity=0.136 Sum_probs=154.8
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccC
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSN 102 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 102 (323)
+++++|++++ +.+.+..+. +..+++|++|++++|. +... ..+..+..+++|++|++++|..-...+..
T Consensus 70 ~~l~~L~l~~-n~l~~~~~~--~~~~~~L~~L~L~~~~-l~~~-------~~~~~~~~~~~L~~L~L~~~~l~~~~~~~- 137 (336)
T 2ast_B 70 QGVIAFRCPR-SFMDQPLAE--HFSPFRVQHMDLSNSV-IEVS-------TLHGILSQCSKLQNLSLEGLRLSDPIVNT- 137 (336)
T ss_dssp TTCSEEECTT-CEECSCCCS--CCCCBCCCEEECTTCE-ECHH-------HHHHHHTTBCCCSEEECTTCBCCHHHHHH-
T ss_pred ccceEEEcCC-ccccccchh--hccCCCCCEEEccCCC-cCHH-------HHHHHHhhCCCCCEEeCcCcccCHHHHHH-
Confidence 6777788777 566665444 4578888888888774 2200 01122337899999999998532233433
Q ss_pred ccccCCCCccEEEEcCCch--------hhhhccCCcceeeecCCCCccc--cCCCCCCCC-CCCEEEeecCc-Ccceecc
Q 020667 103 LGILEFPSLKELWISGCPK--------FMERYNRTTNILTERGCDHLVD--LVPSSTSFQ-NLTNLVVSCCK-GLKIVLT 170 (323)
Q Consensus 103 ~~~~~l~~L~~L~l~~cp~--------~~~~l~~L~~L~~i~~~~~l~~--l~~~~~~l~-~L~~L~l~~c~-~l~~l~~ 170 (323)
...+++|++|++++|.. .+..+++|++| .+.+|..+.. ++..+..++ +|++|++++|. .+++-..
T Consensus 138 --l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L-~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l 214 (336)
T 2ast_B 138 --LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL-NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL 214 (336)
T ss_dssp --HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE-ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHH
T ss_pred --HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEE-cCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHH
Confidence 24789999999999942 24457788888 6888855553 455567788 99999999996 4543333
Q ss_pred hhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCc
Q 020667 171 FSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMK 250 (323)
Q Consensus 171 ~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~ 250 (323)
+..+..+++|++|++++|..++... ...+..+++|++|++++|..+...... ....+++|++|++++|
T Consensus 215 ~~~~~~~~~L~~L~l~~~~~l~~~~-------~~~l~~l~~L~~L~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~~---- 282 (336)
T 2ast_B 215 STLVRRCPNLVHLDLSDSVMLKNDC-------FQEFFQLNYLQHLSLSRCYDIIPETLL-ELGEIPTLKTLQVFGI---- 282 (336)
T ss_dssp HHHHHHCTTCSEEECTTCTTCCGGG-------GGGGGGCTTCCEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTS----
T ss_pred HHHHhhCCCCCEEeCCCCCcCCHHH-------HHHHhCCCCCCEeeCCCCCCCCHHHHH-HHhcCCCCCEEeccCc----
Confidence 5567889999999999998554322 134467899999999999755433221 2456999999999998
Q ss_pred ccCCCC-CCC-CCcceeEccCccccccccchhhhce
Q 020667 251 IFSEGN-SST-PKLHEVQWPGEARWAWKDDLNTTIQ 284 (323)
Q Consensus 251 ~lp~~~-~~~-~~L~~L~l~~~~~~~~~~~l~~~l~ 284 (323)
++... ..+ .+++.|++ ..+.+.+..|+.+.
T Consensus 283 -i~~~~~~~l~~~l~~L~l---~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 283 -VPDGTLQLLKEALPHLQI---NCSHFTTIARPTIG 314 (336)
T ss_dssp -SCTTCHHHHHHHSTTSEE---SCCCSCCTTCSSCS
T ss_pred -cCHHHHHHHHhhCcceEE---ecccCccccCCccc
Confidence 44321 122 34666777 55666666665554
No 68
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.58 E-value=2.2e-14 Score=126.72 Aligned_cols=187 Identities=14% Similarity=0.239 Sum_probs=132.3
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCT 100 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 100 (323)
.+++|++|++++| .++.+ |. +..+++|++|++++|. +.. ++. +..+++|++|+++++. +..++.
T Consensus 39 ~l~~L~~L~l~~~-~i~~l-~~--~~~l~~L~~L~L~~n~-i~~--~~~--------~~~l~~L~~L~L~~n~-l~~~~~ 102 (308)
T 1h6u_A 39 DLDGITTLSAFGT-GVTTI-EG--VQYLNNLIGLELKDNQ-ITD--LAP--------LKNLTKITELELSGNP-LKNVSA 102 (308)
T ss_dssp HHHTCCEEECTTS-CCCCC-TT--GGGCTTCCEEECCSSC-CCC--CGG--------GTTCCSCCEEECCSCC-CSCCGG
T ss_pred HcCCcCEEEeeCC-CccCc-hh--hhccCCCCEEEccCCc-CCC--Chh--------HccCCCCCEEEccCCc-CCCchh
Confidence 6889999999984 67764 64 7889999999999874 331 111 3478999999999884 666642
Q ss_pred cCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccc
Q 020667 101 SNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRL 180 (323)
Q Consensus 101 ~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L 180 (323)
...+++|++|++++|. + ..++ .+..+++|++|++++|. ++.++ . +..+++|
T Consensus 103 ----~~~l~~L~~L~l~~n~--------l------------~~~~-~l~~l~~L~~L~l~~n~-l~~~~--~-l~~l~~L 153 (308)
T 1h6u_A 103 ----IAGLQSIKTLDLTSTQ--------I------------TDVT-PLAGLSNLQVLYLDLNQ-ITNIS--P-LAGLTNL 153 (308)
T ss_dssp ----GTTCTTCCEEECTTSC--------C------------CCCG-GGTTCTTCCEEECCSSC-CCCCG--G-GGGCTTC
T ss_pred ----hcCCCCCCEEECCCCC--------C------------CCch-hhcCCCCCCEEECCCCc-cCcCc--c-ccCCCCc
Confidence 3478999999998872 1 1122 25677888888888874 45442 2 6778888
Q ss_pred cEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCCCCC
Q 020667 181 EYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTP 260 (323)
Q Consensus 181 ~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~ 260 (323)
+.|++++|. +..++ . +..+++|+.|+++++ .++.++. ...+++|++|++++| .+..++. +..++
T Consensus 154 ~~L~l~~n~-l~~~~--------~-l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~L~~N-~l~~~~~-l~~l~ 217 (308)
T 1h6u_A 154 QYLSIGNAQ-VSDLT--------P-LANLSKLTTLKADDN-KISDISP---LASLPNLIEVHLKNN-QISDVSP-LANTS 217 (308)
T ss_dssp CEEECCSSC-CCCCG--------G-GTTCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECTTS-CCCBCGG-GTTCT
T ss_pred cEEEccCCc-CCCCh--------h-hcCCCCCCEEECCCC-ccCcChh---hcCCCCCCEEEccCC-ccCcccc-ccCCC
Confidence 888888874 45544 1 457788888888885 5666653 356888888888775 4555553 56788
Q ss_pred CcceeEcc
Q 020667 261 KLHEVQWP 268 (323)
Q Consensus 261 ~L~~L~l~ 268 (323)
+|+.|++.
T Consensus 218 ~L~~L~l~ 225 (308)
T 1h6u_A 218 NLFIVTLT 225 (308)
T ss_dssp TCCEEEEE
T ss_pred CCCEEEcc
Confidence 88888883
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.58 E-value=9.6e-14 Score=120.23 Aligned_cols=198 Identities=21% Similarity=0.256 Sum_probs=142.3
Q ss_pred CCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccccccccc
Q 020667 22 IQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTS 101 (323)
Q Consensus 22 l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 101 (323)
..+.+++++++ ++++.+ |.. -.++|+.|+++++. +. .++ +..+..+++|++|+++++ .+..++..
T Consensus 15 ~~~~~~l~~~~-~~l~~i-p~~---~~~~l~~L~l~~n~-l~--~~~------~~~~~~l~~L~~L~l~~n-~l~~i~~~ 79 (270)
T 2o6q_A 15 NNNKNSVDCSS-KKLTAI-PSN---IPADTKKLDLQSNK-LS--SLP------SKAFHRLTKLRLLYLNDN-KLQTLPAG 79 (270)
T ss_dssp ETTTTEEECTT-SCCSSC-CSC---CCTTCSEEECCSSC-CS--CCC------TTSSSSCTTCCEEECCSS-CCSCCCTT
T ss_pred CCCCCEEEccC-CCCCcc-CCC---CCCCCCEEECcCCC-CC--eeC------HHHhcCCCCCCEEECCCC-ccCeeChh
Confidence 35688999988 778874 654 23689999999875 33 111 123347899999999987 56667665
Q ss_pred CccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCC-CCCCCCCCCEEEeecCcCcceecchhHHhccccc
Q 020667 102 NLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVP-SSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRL 180 (323)
Q Consensus 102 ~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L 180 (323)
. +..+++|++|++++|. +..+++ .+..+++|++|+++++. ++.++ +..+..+++|
T Consensus 80 ~--~~~l~~L~~L~l~~n~--------------------l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L 135 (270)
T 2o6q_A 80 I--FKELKNLETLWVTDNK--------------------LQALPIGVFDQLVNLAELRLDRNQ-LKSLP-PRVFDSLTKL 135 (270)
T ss_dssp T--TSSCTTCCEEECCSSC--------------------CCCCCTTTTTTCSSCCEEECCSSC-CCCCC-TTTTTTCTTC
T ss_pred h--hcCCCCCCEEECCCCc--------------------CCcCCHhHcccccCCCEEECCCCc-cCeeC-HHHhCcCcCC
Confidence 3 2468999999998762 122222 34678899999999875 55543 3456789999
Q ss_pred cEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCC-CCCC
Q 020667 181 EYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEG-NSST 259 (323)
Q Consensus 181 ~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~ 259 (323)
++|++++|. +..++ ...+..+++|+.|+++++ .++.++... +..+++|++|++++| .++.+|.. +..+
T Consensus 136 ~~L~Ls~n~-l~~~~-------~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l 204 (270)
T 2o6q_A 136 TYLSLGYNE-LQSLP-------KGVFDKLTSLKELRLYNN-QLKRVPEGA-FDKLTELKTLKLDNN-QLKRVPEGAFDSL 204 (270)
T ss_dssp CEEECCSSC-CCCCC-------TTTTTTCTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEEECCSS-CCSCCCTTTTTTC
T ss_pred CEEECCCCc-CCccC-------HhHccCCcccceeEecCC-cCcEeChhH-hccCCCcCEEECCCC-cCCcCCHHHhccc
Confidence 999999875 55555 123467899999999996 687777643 456899999999886 56667764 5678
Q ss_pred CCcceeEccC
Q 020667 260 PKLHEVQWPG 269 (323)
Q Consensus 260 ~~L~~L~l~~ 269 (323)
++|+.|++.+
T Consensus 205 ~~L~~L~l~~ 214 (270)
T 2o6q_A 205 EKLKMLQLQE 214 (270)
T ss_dssp TTCCEEECCS
T ss_pred cCCCEEEecC
Confidence 9999999944
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.57 E-value=2.7e-14 Score=137.45 Aligned_cols=87 Identities=17% Similarity=0.122 Sum_probs=62.7
Q ss_pred ccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCC
Q 020667 178 VRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNS 257 (323)
Q Consensus 178 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~ 257 (323)
++|+.|++++| .+..++ ..+++|+.|+++++ +++.++. .+++|++|++++| .++.+|..+.
T Consensus 221 ~~L~~L~Ls~N-~L~~lp-----------~~l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N-~L~~lp~~l~ 281 (622)
T 3g06_A 221 SGLKELIVSGN-RLTSLP-----------VLPSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRN-QLTRLPESLI 281 (622)
T ss_dssp TTCCEEECCSS-CCSCCC-----------CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCCSCCGGGG
T ss_pred CCCCEEEccCC-ccCcCC-----------CCCCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCC-CCCcCCHHHh
Confidence 55666666655 344444 35678888888886 7777765 3788999999886 5678998888
Q ss_pred CCCCcceeEccCccccccccchhhhceee
Q 020667 258 STPKLHEVQWPGEARWAWKDDLNTTIQKV 286 (323)
Q Consensus 258 ~~~~L~~L~l~~~~~~~~~~~l~~~l~~l 286 (323)
.+++|+.|++ ..+.+.+..+..+..+
T Consensus 282 ~l~~L~~L~L---~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 282 HLSSETTVNL---EGNPLSERTLQALREI 307 (622)
T ss_dssp GSCTTCEEEC---CSCCCCHHHHHHHHHH
T ss_pred hccccCEEEe---cCCCCCCcCHHHHHhc
Confidence 8999999999 6666666666655443
No 71
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.57 E-value=5.9e-14 Score=119.27 Aligned_cols=183 Identities=18% Similarity=0.172 Sum_probs=133.4
Q ss_pred cccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccc
Q 020667 17 VMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFT 96 (323)
Q Consensus 17 ~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 96 (323)
.+. .+++|++|+++++..++.+ +...+..+++|++|++++|..++ .++.. .+..+++|++|+++++ .+.
T Consensus 50 ~~~-~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~--~i~~~------~f~~l~~L~~L~l~~n-~l~ 118 (239)
T 2xwt_C 50 AFS-NLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLT--YIDPD------ALKELPLLKFLGIFNT-GLK 118 (239)
T ss_dssp TTT-TCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCC--EECTT------SEECCTTCCEEEEEEE-CCC
T ss_pred Hcc-CCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCee--EcCHH------HhCCCCCCCEEeCCCC-CCc
Confidence 566 8999999999995448886 44447899999999999977787 33321 2237899999999987 466
Q ss_pred cccccCccccCCCCcc---EEEEcCCchhhhhccCCcceeeecCCCCccccCC-CCCCCCCCC-EEEeecCcCcceecch
Q 020667 97 SFCTSNLGILEFPSLK---ELWISGCPKFMERYNRTTNILTERGCDHLVDLVP-SSTSFQNLT-NLVVSCCKGLKIVLTF 171 (323)
Q Consensus 97 ~~~~~~~~~~~l~~L~---~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~-~~~~l~~L~-~L~l~~c~~l~~l~~~ 171 (323)
.++. . ..+++|+ +|++++|+ .+..+++ .+..+++|+ +|+++++. ++.++.
T Consensus 119 ~lp~-~---~~l~~L~~L~~L~l~~N~-------------------~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~- 173 (239)
T 2xwt_C 119 MFPD-L---TKVYSTDIFFILEITDNP-------------------YMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQG- 173 (239)
T ss_dssp SCCC-C---TTCCBCCSEEEEEEESCT-------------------TCCEECTTTTTTTBSSEEEEECCSCC-CCEECT-
T ss_pred cccc-c---ccccccccccEEECCCCc-------------------chhhcCcccccchhcceeEEEcCCCC-CcccCH-
Confidence 6665 2 3667777 88888763 2223333 366788999 99999875 556632
Q ss_pred hHHhccccccEEEEccCcccceeeeccCcccccccccc-cccCeeecccccccceecCCCccccCCcccEEeecCCCC
Q 020667 172 SIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITF-RELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPS 248 (323)
Q Consensus 172 ~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~-~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~ 248 (323)
..+.. ++|+.|++++|..++.++. ..+..+ ++|+.|++++ ..++.++.. .+++|++|++.++..
T Consensus 174 ~~~~~-~~L~~L~L~~n~~l~~i~~-------~~~~~l~~~L~~L~l~~-N~l~~l~~~----~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 174 YAFNG-TKLDAVYLNKNKYLTVIDK-------DAFGGVYSGPSLLDVSQ-TSVTALPSK----GLEHLKELIARNTWT 238 (239)
T ss_dssp TTTTT-CEEEEEECTTCTTCCEECT-------TTTTTCSBCCSEEECTT-CCCCCCCCT----TCTTCSEEECTTC--
T ss_pred hhcCC-CCCCEEEcCCCCCcccCCH-------HHhhccccCCcEEECCC-CccccCChh----HhccCceeeccCccC
Confidence 22333 8999999999876877762 234567 8999999999 478888765 489999999988764
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.54 E-value=3.2e-15 Score=132.33 Aligned_cols=236 Identities=15% Similarity=0.038 Sum_probs=145.0
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCT 100 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 100 (323)
..++|++|++++ +.+ . +|..+... |+.|+++++. +....++...+........+++|++|+++++.--+.++.
T Consensus 41 ~~~~L~~l~l~~-n~l-~-~p~~~~~~---L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 41 GGRSLEYLLKRV-DTE-A-DLGQFTDI---IKSLSLKRLT-VRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEECTTHHHHC-CTT-C-CCHHHHHH---HHHCCCCEEE-EEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred cCCCceeEeecc-ccc-c-cHHHHHHH---Hhhccccccc-ccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 566777777777 445 3 46553222 6677666542 221122211100000001367788888887743334444
Q ss_pred cCccccCCCCccEEEEcCC-----chhhhhc-----cCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecc
Q 020667 101 SNLGILEFPSLKELWISGC-----PKFMERY-----NRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLT 170 (323)
Q Consensus 101 ~~~~~~~l~~L~~L~l~~c-----p~~~~~l-----~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 170 (323)
... ...+++|++|++++| |..++.+ ++|++| ++.++......+..+..+++|++|++++|...+....
T Consensus 114 ~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 191 (312)
T 1wwl_A 114 PLL-EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVL-SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191 (312)
T ss_dssp CSS-SCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEE-EEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHH
T ss_pred HHH-HhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEE-EeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHH
Confidence 421 136778888888877 3344444 667776 5666554443446788999999999999975544322
Q ss_pred hhHH--hccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCC
Q 020667 171 FSIA--KTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPS 248 (323)
Q Consensus 171 ~~~l--~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~ 248 (323)
+..+ ..+++|++|++++|. +..++.. ....+..+++|++|+++++ .++..........+++|++|++++| .
T Consensus 192 ~~~~~~~~l~~L~~L~L~~N~-l~~~~~~----~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N-~ 264 (312)
T 1wwl_A 192 ISALCPLKFPTLQVLALRNAG-METPSGV----CSALAAARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFT-G 264 (312)
T ss_dssp HHHSCTTSCTTCCEEECTTSC-CCCHHHH----HHHHHHTTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTS-C
T ss_pred HHHHHhccCCCCCEEECCCCc-CcchHHH----HHHHHhcCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCC-c
Confidence 3333 789999999999985 4432200 0111235689999999996 6776543222345789999999886 5
Q ss_pred CcccCCCCCCCCCcceeEccCcccccccc
Q 020667 249 MKIFSEGNSSTPKLHEVQWPGEARWAWKD 277 (323)
Q Consensus 249 l~~lp~~~~~~~~L~~L~l~~~~~~~~~~ 277 (323)
++.+|..+. ++|++|++ +.+.+.+
T Consensus 265 l~~ip~~~~--~~L~~L~L---s~N~l~~ 288 (312)
T 1wwl_A 265 LKQVPKGLP--AKLSVLDL---SYNRLDR 288 (312)
T ss_dssp CSSCCSSCC--SEEEEEEC---CSSCCCS
T ss_pred cChhhhhcc--CCceEEEC---CCCCCCC
Confidence 678998775 89999999 4454443
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.54 E-value=3.2e-14 Score=123.39 Aligned_cols=191 Identities=15% Similarity=0.119 Sum_probs=139.7
Q ss_pred cccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccc
Q 020667 15 VTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLEN 94 (323)
Q Consensus 15 p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 94 (323)
..++. .+++|++|++++ +.++++ +. ++.+++|++|++++|. +. .++ +..+..+++|++|+++++ .
T Consensus 56 ~~~l~-~l~~L~~L~l~~-n~l~~~-~~--l~~l~~L~~L~L~~n~-l~--~~~------~~~~~~l~~L~~L~L~~n-~ 120 (272)
T 3rfs_A 56 VQGIQ-YLPNVRYLALGG-NKLHDI-SA--LKELTNLTYLILTGNQ-LQ--SLP------NGVFDKLTNLKELVLVEN-Q 120 (272)
T ss_dssp CTTGG-GCTTCCEEECTT-SCCCCC-GG--GTTCTTCCEEECTTSC-CC--CCC------TTTTTTCTTCCEEECTTS-C
T ss_pred ccccc-cCCCCcEEECCC-CCCCCc-hh--hcCCCCCCEEECCCCc-cC--ccC------hhHhcCCcCCCEEECCCC-c
Confidence 34577 899999999999 567774 54 7899999999999884 33 111 112347899999999998 4
Q ss_pred cccccccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCC-CCCCCCCCCEEEeecCcCcceecchhH
Q 020667 95 FTSFCTSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVP-SSTSFQNLTNLVVSCCKGLKIVLTFSI 173 (323)
Q Consensus 95 l~~~~~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~ 173 (323)
+..++... +..+++|++|++++|. +..+++ .+..+++|++|++++|. ++.++ +..
T Consensus 121 l~~~~~~~--~~~l~~L~~L~L~~n~--------------------l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~ 176 (272)
T 3rfs_A 121 LQSLPDGV--FDKLTNLTYLNLAHNQ--------------------LQSLPKGVFDKLTNLTELDLSYNQ-LQSLP-EGV 176 (272)
T ss_dssp CCCCCTTT--TTTCTTCCEEECCSSC--------------------CCCCCTTTTTTCTTCCEEECCSSC-CCCCC-TTT
T ss_pred CCccCHHH--hccCCCCCEEECCCCc--------------------cCccCHHHhccCccCCEEECCCCC-cCccC-HHH
Confidence 66666543 2478999999998862 122333 25678999999999985 55553 345
Q ss_pred HhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccC
Q 020667 174 AKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFS 253 (323)
Q Consensus 174 l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp 253 (323)
+..+++|+.|++++|. +..++ ...+..+++|+.|++.+++ +. ..+++|++|+++.+...+.+|
T Consensus 177 ~~~l~~L~~L~L~~N~-l~~~~-------~~~~~~l~~L~~L~l~~N~-~~--------~~~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 177 FDKLTQLKDLRLYQNQ-LKSVP-------DGVFDRLTSLQYIWLHDNP-WD--------CTCPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp TTTCTTCCEEECCSSC-CSCCC-------TTTTTTCTTCCEEECCSSC-BC--------CCTTTTHHHHHHHHHTGGGBB
T ss_pred hcCCccCCEEECCCCc-CCccC-------HHHHhCCcCCCEEEccCCC-cc--------ccCcHHHHHHHHHHhCCCccc
Confidence 6789999999999986 55554 1334678999999999973 21 347889999998887778899
Q ss_pred CCCCCCCC
Q 020667 254 EGNSSTPK 261 (323)
Q Consensus 254 ~~~~~~~~ 261 (323)
.++..++.
T Consensus 240 ~~~~~~~~ 247 (272)
T 3rfs_A 240 NSAGSVAP 247 (272)
T ss_dssp CTTSCBCG
T ss_pred CcccccCC
Confidence 87755543
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.54 E-value=1.7e-13 Score=118.93 Aligned_cols=197 Identities=19% Similarity=0.197 Sum_probs=138.7
Q ss_pred ccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccc
Q 020667 16 TVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENF 95 (323)
Q Consensus 16 ~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 95 (323)
..+. .+++|++|++++ +.++++.+. .+..+++|++|+++++.. . .+. +..+..+++|++|+++++ .+
T Consensus 46 ~~~~-~l~~L~~L~l~~-n~l~~~~~~-~~~~l~~L~~L~L~~n~l-~--~~~------~~~~~~l~~L~~L~l~~n-~l 112 (276)
T 2z62_A 46 YSFF-SFPELQVLDLSR-CEIQTIEDG-AYQSLSHLSTLILTGNPI-Q--SLA------LGAFSGLSSLQKLVAVET-NL 112 (276)
T ss_dssp TTTT-TCTTCSEEECTT-CCCCEECTT-TTTTCTTCCEEECTTCCC-C--EEC------TTTTTTCTTCCEEECTTS-CC
T ss_pred hHhc-cccCCcEEECCC-CcCCccCHH-HccCCcCCCEEECCCCcc-C--ccC------hhhhcCCccccEEECCCC-Cc
Confidence 3577 899999999999 578886443 378999999999998753 3 111 122337899999999987 45
Q ss_pred ccccccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHh
Q 020667 96 TSFCTSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAK 175 (323)
Q Consensus 96 ~~~~~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~ 175 (323)
..++... +..+++|++|++++|. +..+ .+|..+..+++|++|++++|. ++.++ +..+.
T Consensus 113 ~~~~~~~--~~~l~~L~~L~l~~n~--------l~~~----------~l~~~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~ 170 (276)
T 2z62_A 113 ASLENFP--IGHLKTLKELNVAHNL--------IQSF----------KLPEYFSNLTNLEHLDLSSNK-IQSIY-CTDLR 170 (276)
T ss_dssp CCSTTCC--CTTCTTCCEEECCSSC--------CCCC----------CCCGGGGGCTTCCEEECCSSC-CCEEC-GGGGH
T ss_pred cccCchh--cccCCCCCEEECcCCc--------ccee----------cCchhhccCCCCCEEECCCCC-CCcCC-HHHhh
Confidence 5554432 3578999999998862 1111 245567788999999999985 55543 33455
Q ss_pred cccccc----EEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcc
Q 020667 176 TLVRLE----YMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKI 251 (323)
Q Consensus 176 ~l~~L~----~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~ 251 (323)
.+++|+ .|+++++. +..++ .......+|+.|+++++ .++.++... +..+++|++|++++++..
T Consensus 171 ~l~~L~~l~l~L~ls~n~-l~~~~--------~~~~~~~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~l~~N~~~-- 237 (276)
T 2z62_A 171 VLHQMPLLNLSLDLSLNP-MNFIQ--------PGAFKEIRLKELALDTN-QLKSVPDGI-FDRLTSLQKIWLHTNPWD-- 237 (276)
T ss_dssp HHHTCTTCCEEEECCSSC-CCEEC--------TTSSCSCCEEEEECCSS-CCSCCCTTT-TTTCCSCCEEECCSSCBC--
T ss_pred hhhhccccceeeecCCCc-ccccC--------ccccCCCcccEEECCCC-ceeecCHhH-hcccccccEEEccCCccc--
Confidence 566666 78888875 56665 22234458999999996 688887643 467899999999987643
Q ss_pred cCCCCCCCCCccee
Q 020667 252 FSEGNSSTPKLHEV 265 (323)
Q Consensus 252 lp~~~~~~~~L~~L 265 (323)
+.|+.++.+
T Consensus 238 -----c~c~~l~~l 246 (276)
T 2z62_A 238 -----CSCPRIDYL 246 (276)
T ss_dssp -----CCTTTTHHH
T ss_pred -----ccCCchHHH
Confidence 245556555
No 75
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.53 E-value=3.5e-14 Score=132.17 Aligned_cols=71 Identities=17% Similarity=0.087 Sum_probs=39.9
Q ss_pred ccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEccCcccccccc--chhhhce
Q 020667 207 ITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQWPGEARWAWKD--DLNTTIQ 284 (323)
Q Consensus 207 ~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~~~~~~~~~--~l~~~l~ 284 (323)
..+++|++|+++++ +++.++. .+++|++|++++|. ++.+|.. +++|++|++ +.+.+.+ .+|+.++
T Consensus 234 ~~l~~L~~L~l~~N-~l~~l~~-----~~~~L~~L~l~~N~-l~~l~~~---~~~L~~L~l---s~N~l~~l~~~~~~L~ 300 (454)
T 1jl5_A 234 QNLPFLTTIYADNN-LLKTLPD-----LPPSLEALNVRDNY-LTDLPEL---PQSLTFLDV---SENIFSGLSELPPNLY 300 (454)
T ss_dssp TTCTTCCEEECCSS-CCSSCCS-----CCTTCCEEECCSSC-CSCCCCC---CTTCCEEEC---CSSCCSEESCCCTTCC
T ss_pred CCCCCCCEEECCCC-cCCcccc-----cccccCEEECCCCc-ccccCcc---cCcCCEEEC---cCCccCcccCcCCcCC
Confidence 45666666666664 4555442 13567777776643 4446652 467777777 3333433 4455666
Q ss_pred eeeccc
Q 020667 285 KVIFPA 290 (323)
Q Consensus 285 ~l~~~~ 290 (323)
.+.+.+
T Consensus 301 ~L~l~~ 306 (454)
T 1jl5_A 301 YLNASS 306 (454)
T ss_dssp EEECCS
T ss_pred EEECcC
Confidence 655544
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.52 E-value=7.1e-14 Score=123.53 Aligned_cols=194 Identities=15% Similarity=0.127 Sum_probs=107.4
Q ss_pred CCCccEEEEecCCCCceEEeeccccccCCCc--cccCCcCEEecccccccccccccC-ccccCCCCccEEEEcCCc----
Q 020667 48 FVRLQRIEIVECPVLKELIVMDNQEERKNNN--VMFPQLQYLKMFNLENFTSFCTSN-LGILEFPSLKELWISGCP---- 120 (323)
Q Consensus 48 l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~l~~L~~L~l~~cp---- 120 (323)
+++|++|++++|.... .. +..+ ..+++|++|+++++..-...+... .....+++|++|++++|.
T Consensus 90 ~~~L~~L~l~~n~l~~--~~-------~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 160 (310)
T 4glp_A 90 YSRLKELTLEDLKITG--TM-------PPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAF 160 (310)
T ss_dssp HSCCCEEEEESCCCBS--CC-------CCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCC
T ss_pred cCceeEEEeeCCEecc--ch-------hhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchh
Confidence 4556777766664322 11 1111 256666666666653222111000 001246666677666662
Q ss_pred --hhhhhccCCcceeeecCCCCccc--cC--CCCCCCCCCCEEEeecCcCcceecc-hh-HHhccccccEEEEccCcccc
Q 020667 121 --KFMERYNRTTNILTERGCDHLVD--LV--PSSTSFQNLTNLVVSCCKGLKIVLT-FS-IAKTLVRLEYMEIESCDRIT 192 (323)
Q Consensus 121 --~~~~~l~~L~~L~~i~~~~~l~~--l~--~~~~~l~~L~~L~l~~c~~l~~l~~-~~-~l~~l~~L~~L~l~~c~~l~ 192 (323)
..+..+++|+.| ++.++...+. ++ .....+++|++|++++|. ++.++. +. .+..+++|++|++++|..-.
T Consensus 161 ~~~~~~~l~~L~~L-~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~ 238 (310)
T 4glp_A 161 SCEQVRAFPALTSL-DLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRA 238 (310)
T ss_dssp CTTSCCCCTTCCEE-ECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCC
T ss_pred hHHHhccCCCCCEE-ECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCc
Confidence 222334444444 3444433221 21 123567888888888875 444311 11 24677888888888876333
Q ss_pred eeeeccCccccccccc---ccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEc
Q 020667 193 EIVLVDDVAAKDEVIT---FRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQW 267 (323)
Q Consensus 193 ~i~~~~~~~~~~~~~~---~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l 267 (323)
..| ..+.. +++|++|+++++ .++.++... .++|++|++++| .++.+|. ...+++|++|++
T Consensus 239 ~~p--------~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~----~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L 301 (310)
T 4glp_A 239 TVN--------PSAPRCMWSSALNSLNLSFA-GLEQVPKGL----PAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTL 301 (310)
T ss_dssp CCC--------SCCSSCCCCTTCCCEECCSS-CCCSCCSCC----CSCCSCEECCSC-CCCSCCC-TTSCCCCSCEEC
T ss_pred cch--------hhHHhccCcCcCCEEECCCC-CCCchhhhh----cCCCCEEECCCC-cCCCCch-hhhCCCccEEEC
Confidence 323 11122 378888888885 677776543 478888888775 4555655 457788888888
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.52 E-value=2.4e-13 Score=117.75 Aligned_cols=180 Identities=19% Similarity=0.194 Sum_probs=132.5
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccC
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSN 102 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 102 (323)
++|++|++++ ++++++ |...+..+++|++|+++++. +. .++.. .+..+++|++|+++++ .+..++...
T Consensus 37 ~~l~~L~l~~-n~l~~~-~~~~~~~l~~L~~L~l~~n~-l~--~i~~~------~~~~l~~L~~L~l~~n-~l~~~~~~~ 104 (270)
T 2o6q_A 37 ADTKKLDLQS-NKLSSL-PSKAFHRLTKLRLLYLNDNK-LQ--TLPAG------IFKELKNLETLWVTDN-KLQALPIGV 104 (270)
T ss_dssp TTCSEEECCS-SCCSCC-CTTSSSSCTTCCEEECCSSC-CS--CCCTT------TTSSCTTCCEEECCSS-CCCCCCTTT
T ss_pred CCCCEEECcC-CCCCee-CHHHhcCCCCCCEEECCCCc-cC--eeChh------hhcCCCCCCEEECCCC-cCCcCCHhH
Confidence 6799999998 678876 44347899999999999874 33 12211 1236899999999987 466666543
Q ss_pred ccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccC-CCCCCCCCCCEEEeecCcCcceecchhHHhcccccc
Q 020667 103 LGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLV-PSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLE 181 (323)
Q Consensus 103 ~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~ 181 (323)
+..+++|++|++++|. +..++ ..+..+++|++|++++|. ++.++ +..+..+++|+
T Consensus 105 --~~~l~~L~~L~l~~n~--------------------l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~ 160 (270)
T 2o6q_A 105 --FDQLVNLAELRLDRNQ--------------------LKSLPPRVFDSLTKLTYLSLGYNE-LQSLP-KGVFDKLTSLK 160 (270)
T ss_dssp --TTTCSSCCEEECCSSC--------------------CCCCCTTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCC
T ss_pred --cccccCCCEEECCCCc--------------------cCeeCHHHhCcCcCCCEEECCCCc-CCccC-HhHccCCcccc
Confidence 2578999999998862 11222 235678999999999985 55553 33467899999
Q ss_pred EEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCC
Q 020667 182 YMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPS 248 (323)
Q Consensus 182 ~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~ 248 (323)
+|++++|. +..++ ...+..+++|+.|+++++ .++.++... +..+++|++|++++++.
T Consensus 161 ~L~L~~n~-l~~~~-------~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 161 ELRLYNNQ-LKRVP-------EGAFDKLTELKTLKLDNN-QLKRVPEGA-FDSLEKLKMLQLQENPW 217 (270)
T ss_dssp EEECCSSC-CSCCC-------TTTTTTCTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEEECCSSCB
T ss_pred eeEecCCc-CcEeC-------hhHhccCCCcCEEECCCC-cCCcCCHHH-hccccCCCEEEecCCCe
Confidence 99999875 55555 123457899999999996 788887653 46789999999998763
No 78
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.51 E-value=1.3e-15 Score=138.86 Aligned_cols=237 Identities=11% Similarity=0.066 Sum_probs=154.4
Q ss_pred cccccccCCcccEEeeecccccceeccch---hHhcCCCccEEEEecCC--CCceEEeeccccccCCCccccCCcCEEec
Q 020667 15 VTVMSCGIQNLMHLTLRSCMNLRYLFSSS---IVSSFVRLQRIEIVECP--VLKELIVMDNQEERKNNNVMFPQLQYLKM 89 (323)
Q Consensus 15 p~~~~~~l~~L~~L~L~~c~~l~~~~p~~---~~~~l~~L~~L~ls~c~--~l~~l~~~~~~~~~~~~~~~l~~L~~L~l 89 (323)
+..+. .+++|++|++++| .+++..+.. .+..+++|++|++++|. .+.. .++.........+..+++|++|++
T Consensus 25 ~~~l~-~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~-~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 25 FAVLL-EDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKD-EIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp SHHHH-HCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGG-GSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHh-cCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCcccc-chhHHHHHHHHHHhhCCcccEEEC
Confidence 34466 7899999999994 566543322 14579999999999873 2220 001111111122347899999999
Q ss_pred cccccccc-----ccccCccccCCCCccEEEEcCCch------hh----hhc---------cCCcceeeecCCCCc-ccc
Q 020667 90 FNLENFTS-----FCTSNLGILEFPSLKELWISGCPK------FM----ERY---------NRTTNILTERGCDHL-VDL 144 (323)
Q Consensus 90 ~~~~~l~~-----~~~~~~~~~~l~~L~~L~l~~cp~------~~----~~l---------~~L~~L~~i~~~~~l-~~l 144 (323)
+++. ++. ++.. ...+++|++|++++|.- .+ ..+ ++|++| .+.+|... ..+
T Consensus 102 s~n~-l~~~~~~~l~~~---l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L-~L~~n~l~~~~~ 176 (386)
T 2ca6_A 102 SDNA-FGPTAQEPLIDF---LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI-ICGRNRLENGSM 176 (386)
T ss_dssp CSCC-CCTTTHHHHHHH---HHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEE-ECCSSCCTGGGH
T ss_pred CCCc-CCHHHHHHHHHH---HHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEE-ECCCCCCCcHHH
Confidence 9884 443 3333 23789999999999932 12 223 678877 56666543 233
Q ss_pred C---CCCCCCCCCCEEEeecCcCcceec----chhHHhccccccEEEEccCccc----ceeeeccCcccccccccccccC
Q 020667 145 V---PSSTSFQNLTNLVVSCCKGLKIVL----TFSIAKTLVRLEYMEIESCDRI----TEIVLVDDVAAKDEVITFRELK 213 (323)
Q Consensus 145 ~---~~~~~l~~L~~L~l~~c~~l~~l~----~~~~l~~l~~L~~L~l~~c~~l----~~i~~~~~~~~~~~~~~~~~L~ 213 (323)
+ ..+..+++|++|++++|. ++... .+..+..+++|+.|++++|..- ..++ ..+..+++|+
T Consensus 177 ~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~--------~~l~~~~~L~ 247 (386)
T 2ca6_A 177 KEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA--------IALKSWPNLR 247 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH--------HHGGGCTTCC
T ss_pred HHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH--------HHHccCCCcC
Confidence 3 245577899999999985 44211 1225678999999999998732 3333 3346789999
Q ss_pred eeecccccccceecCC---Ccc--ccCCcccEEeecCCCCCc----ccCCCC-CCCCCcceeEccC
Q 020667 214 ELKLLNLESLTSFCSG---NCA--FKFPSLERLVLDDCPSMK----IFSEGN-SSTPKLHEVQWPG 269 (323)
Q Consensus 214 ~L~l~~c~~L~~l~~~---~~~--~~l~~L~~L~l~~c~~l~----~lp~~~-~~~~~L~~L~l~~ 269 (323)
+|++++| .++..... ... ..+++|++|++++|..-. .+|..+ .++++|++|++.+
T Consensus 248 ~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 248 ELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 312 (386)
T ss_dssp EEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred EEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence 9999997 45543111 011 238999999999976444 388766 4589999999944
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.47 E-value=1.1e-12 Score=114.91 Aligned_cols=177 Identities=20% Similarity=0.191 Sum_probs=132.2
Q ss_pred CCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccccccccc
Q 020667 22 IQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTS 101 (323)
Q Consensus 22 l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 101 (323)
.+++++|++++ +.++++.|.. +..+++|++|+++++. +..+ +.. ..+++|++|+++++ .+..++..
T Consensus 30 ~~~l~~L~L~~-N~l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~--~~~--------~~l~~L~~L~Ls~N-~l~~l~~~ 95 (290)
T 1p9a_G 30 PKDTTILHLSE-NLLYTFSLAT-LMPYTRLTQLNLDRAE-LTKL--QVD--------GTLPVLGTLDLSHN-QLQSLPLL 95 (290)
T ss_dssp CTTCCEEECTT-SCCSEEEGGG-GTTCTTCCEEECTTSC-CCEE--ECC--------SCCTTCCEEECCSS-CCSSCCCC
T ss_pred CCCCCEEEcCC-CcCCccCHHH-hhcCCCCCEEECCCCc-cCcc--cCC--------CCCCcCCEEECCCC-cCCcCchh
Confidence 37899999999 6788875544 7899999999999875 5532 211 27899999999987 57777765
Q ss_pred CccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccC-CCCCCCCCCCEEEeecCcCcceecchhHHhccccc
Q 020667 102 NLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLV-PSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRL 180 (323)
Q Consensus 102 ~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L 180 (323)
. ..+++|++|++++|. +..++ ..+..+++|++|++++|. ++.++ +..+..+++|
T Consensus 96 ~---~~l~~L~~L~l~~N~--------------------l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L 150 (290)
T 1p9a_G 96 G---QTLPALTVLDVSFNR--------------------LTSLPLGALRGLGELQELYLKGNE-LKTLP-PGLLTPTPKL 150 (290)
T ss_dssp T---TTCTTCCEEECCSSC--------------------CCCCCSSTTTTCTTCCEEECTTSC-CCCCC-TTTTTTCTTC
T ss_pred h---ccCCCCCEEECCCCc--------------------CcccCHHHHcCCCCCCEEECCCCC-CCccC-hhhcccccCC
Confidence 3 488999999998862 22233 346678899999999885 55553 3456788999
Q ss_pred cEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCC
Q 020667 181 EYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPS 248 (323)
Q Consensus 181 ~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~ 248 (323)
+.|++++|. +..++. ..+..+++|+.|+++++ .++.++... ...++|+.|++++++.
T Consensus 151 ~~L~L~~N~-l~~l~~-------~~~~~l~~L~~L~L~~N-~l~~ip~~~--~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 151 EKLSLANNN-LTELPA-------GLLNGLENLDTLLLQEN-SLYTIPKGF--FGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CEEECTTSC-CSCCCT-------TTTTTCTTCCEEECCSS-CCCCCCTTT--TTTCCCSEEECCSCCB
T ss_pred CEEECCCCc-CCccCH-------HHhcCcCCCCEEECCCC-cCCccChhh--cccccCCeEEeCCCCc
Confidence 999998875 666651 22356889999999985 788887754 5677899999987664
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.46 E-value=8.2e-13 Score=116.63 Aligned_cols=176 Identities=15% Similarity=0.262 Sum_probs=125.4
Q ss_pred cccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccc
Q 020667 17 VMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFT 96 (323)
Q Consensus 17 ~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 96 (323)
.+. .+++|++|++++ +.++++ +. +..+++|++|+++++. ++.+ + .+..+++|++|+++++ .+.
T Consensus 58 ~~~-~l~~L~~L~L~~-n~i~~~-~~--~~~l~~L~~L~L~~n~-l~~~--~--------~~~~l~~L~~L~l~~n-~l~ 120 (308)
T 1h6u_A 58 GVQ-YLNNLIGLELKD-NQITDL-AP--LKNLTKITELELSGNP-LKNV--S--------AIAGLQSIKTLDLTST-QIT 120 (308)
T ss_dssp TGG-GCTTCCEEECCS-SCCCCC-GG--GTTCCSCCEEECCSCC-CSCC--G--------GGTTCTTCCEEECTTS-CCC
T ss_pred hhh-ccCCCCEEEccC-CcCCCC-hh--HccCCCCCEEEccCCc-CCCc--h--------hhcCCCCCCEEECCCC-CCC
Confidence 477 899999999998 578875 54 7899999999999886 4421 1 2347999999999998 466
Q ss_pred cccccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhc
Q 020667 97 SFCTSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKT 176 (323)
Q Consensus 97 ~~~~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~ 176 (323)
.++. ...+++|++|++++|. + ..+++ +..+++|++|++++|. ++.+ +. +..
T Consensus 121 ~~~~----l~~l~~L~~L~l~~n~--------l------------~~~~~-l~~l~~L~~L~l~~n~-l~~~--~~-l~~ 171 (308)
T 1h6u_A 121 DVTP----LAGLSNLQVLYLDLNQ--------I------------TNISP-LAGLTNLQYLSIGNAQ-VSDL--TP-LAN 171 (308)
T ss_dssp CCGG----GTTCTTCCEEECCSSC--------C------------CCCGG-GGGCTTCCEEECCSSC-CCCC--GG-GTT
T ss_pred Cchh----hcCCCCCCEEECCCCc--------c------------CcCcc-ccCCCCccEEEccCCc-CCCC--hh-hcC
Confidence 6654 2479999999998872 1 11212 5567788888888774 5554 22 677
Q ss_pred cccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccC
Q 020667 177 LVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFS 253 (323)
Q Consensus 177 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp 253 (323)
+++|+.|++++|. +..++ .+..+++|++|+++++ .++.++. ...+++|++|++++|+ +...|
T Consensus 172 l~~L~~L~l~~n~-l~~~~---------~l~~l~~L~~L~L~~N-~l~~~~~---l~~l~~L~~L~l~~N~-i~~~~ 233 (308)
T 1h6u_A 172 LSKLTTLKADDNK-ISDIS---------PLASLPNLIEVHLKNN-QISDVSP---LANTSNLFIVTLTNQT-ITNQP 233 (308)
T ss_dssp CTTCCEEECCSSC-CCCCG---------GGGGCTTCCEEECTTS-CCCBCGG---GTTCTTCCEEEEEEEE-EECCC
T ss_pred CCCCCEEECCCCc-cCcCh---------hhcCCCCCCEEEccCC-ccCcccc---ccCCCCCCEEEccCCe-eecCC
Confidence 8888888888764 44444 1357788888888886 5666652 3567888888887755 34333
No 81
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.45 E-value=3.6e-14 Score=136.21 Aligned_cols=106 Identities=13% Similarity=0.073 Sum_probs=51.8
Q ss_pred CccccCCcCEEecccccccccccccCccccCCCCccEEEEcCC------chhhhhccCCcceeeecC----------CCC
Q 020667 77 NNVMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGC------PKFMERYNRTTNILTERG----------CDH 140 (323)
Q Consensus 77 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c------p~~~~~l~~L~~L~~i~~----------~~~ 140 (323)
.+..+++|++|++++|. +........ ...+++|++|++.++ +.....+++|++| .+.+ |..
T Consensus 288 ~~~~~~~L~~L~Ls~~~-l~~~~~~~~-~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L-~L~~g~~~~~~~~~~~~ 364 (592)
T 3ogk_B 288 LFPFAAQIRKLDLLYAL-LETEDHCTL-IQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL-RIERGADEQGMEDEEGL 364 (592)
T ss_dssp GGGGGGGCCEEEETTCC-CCHHHHHHH-HTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE-EEECCCCSSTTSSTTCC
T ss_pred HHhhcCCCcEEecCCCc-CCHHHHHHH-HHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE-EeecCccccccccccCc
Confidence 34456677777777765 332211100 135677777777644 2223345666666 4553 444
Q ss_pred cccc--CCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEc
Q 020667 141 LVDL--VPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIE 186 (323)
Q Consensus 141 l~~l--~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~ 186 (323)
++.. +.....+++|++|++ .|..+++.........+++|+.|++.
T Consensus 365 ~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 365 VSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp CCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred cCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 4321 111223566666666 33334432211222236666666665
No 82
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.45 E-value=1.3e-14 Score=139.18 Aligned_cols=163 Identities=17% Similarity=0.192 Sum_probs=86.8
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecC---------------CCCceEEeeccc--c----ccCCCcc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVEC---------------PVLKELIVMDNQ--E----ERKNNNV 79 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c---------------~~l~~l~~~~~~--~----~~~~~~~ 79 (323)
.+++|++|++++|. +++..+..+...+++|++|++++| ++++++.+..+. + ..+....
T Consensus 103 ~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 103 SYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred hCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 46677777777643 444333332235677777776643 344444433221 0 0111222
Q ss_pred ccCCcCEEeccccc-ccc--cccccCccccCCCCccEEEEcCCc------hhhhhccCCccee-----------------
Q 020667 80 MFPQLQYLKMFNLE-NFT--SFCTSNLGILEFPSLKELWISGCP------KFMERYNRTTNIL----------------- 133 (323)
Q Consensus 80 ~l~~L~~L~l~~~~-~l~--~~~~~~~~~~~l~~L~~L~l~~cp------~~~~~l~~L~~L~----------------- 133 (323)
.+++|++|++++|. .+. .+... ...+++|++|++.+|. ..+..+++|++|.
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l---~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 258 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERL---VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLS 258 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHH---HHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHH---HHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHH
Confidence 56688888888774 111 11111 1247899999999882 3344556666663
Q ss_pred -eecCCCCcccc-----------CCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccC
Q 020667 134 -TERGCDHLVDL-----------VPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESC 188 (323)
Q Consensus 134 -~i~~~~~l~~l-----------~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c 188 (323)
.+.+|..+..+ +.....+++|++|++++|. +++......+.++++|++|++.+|
T Consensus 259 ~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 259 VALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred HHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc
Confidence 12333333322 2222246778888888776 444322333556777777777665
No 83
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.45 E-value=9.1e-13 Score=118.45 Aligned_cols=199 Identities=15% Similarity=0.121 Sum_probs=145.9
Q ss_pred cccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccc
Q 020667 17 VMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFT 96 (323)
Q Consensus 17 ~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 96 (323)
.+. .+++|++|+|++ +.+.+.+|...+.++++|+.+.+.++..+. .++.. .+..+++|++|+++++ .+.
T Consensus 49 ~f~-~l~~L~~L~Ls~-N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~--~l~~~------~f~~l~~L~~L~l~~n-~l~ 117 (350)
T 4ay9_X 49 AFS-GFGDLEKIEISQ-NDVLEVIEADVFSNLPKLHEIRIEKANNLL--YINPE------AFQNLPNLQYLLISNT-GIK 117 (350)
T ss_dssp SST-TCTTCCEEEEEC-CTTCCEECTTSBCSCTTCCEEEEEEETTCC--EECTT------SBCCCTTCCEEEEEEE-CCS
T ss_pred HHc-CCCCCCEEECcC-CCCCCccChhHhhcchhhhhhhcccCCccc--ccCch------hhhhcccccccccccc-ccc
Confidence 466 899999999999 455444576667889999988887777887 33221 2237899999999987 566
Q ss_pred cccccCccccCCCCccEEEEcCCchhh-------hhc-cCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCccee
Q 020667 97 SFCTSNLGILEFPSLKELWISGCPKFM-------ERY-NRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIV 168 (323)
Q Consensus 97 ~~~~~~~~~~~l~~L~~L~l~~cp~~~-------~~l-~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l 168 (323)
.++.... ....++..|++.++.... ..+ ..++.| .-..+.+..+++.....++|+++.+.+++.++.+
T Consensus 118 ~~~~~~~--~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L--~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i 193 (350)
T 4ay9_X 118 HLPDVHK--IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL--WLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEEL 193 (350)
T ss_dssp SCCCCTT--CCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEE--ECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCC
T ss_pred cCCchhh--cccchhhhhhhccccccccccccchhhcchhhhhh--ccccccccCCChhhccccchhHHhhccCCcccCC
Confidence 6655432 345678888887763321 111 123333 2344567788888878889999999998889988
Q ss_pred cchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecC
Q 020667 169 LTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDD 245 (323)
Q Consensus 169 ~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~ 245 (323)
+ ...+.++++|+.|+++++. ++.+|. ..+.+|+.|.+.++.+++.+|. ...+++|+.+++.+
T Consensus 194 ~-~~~f~~l~~L~~LdLs~N~-l~~lp~----------~~~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 194 P-NDVFHGASGPVILDISRTR-IHSLPS----------YGLENLKKLRARSTYNLKKLPT---LEKLVALMEASLTY 255 (350)
T ss_dssp C-TTTTTTEECCSEEECTTSC-CCCCCS----------SSCTTCCEEECTTCTTCCCCCC---TTTCCSCCEEECSC
T ss_pred C-HHHhccCcccchhhcCCCC-cCccCh----------hhhccchHhhhccCCCcCcCCC---chhCcChhhCcCCC
Confidence 4 2456889999999999874 788872 3578899999999999999984 35799999999865
No 84
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.43 E-value=3.4e-12 Score=122.98 Aligned_cols=174 Identities=13% Similarity=0.070 Sum_probs=114.0
Q ss_pred ccCCcCEEecccccccccccccCccccCCCCccEEEEcCCch-------hhhhccCCcceeeecCCCCccccCCCCCCCC
Q 020667 80 MFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCPK-------FMERYNRTTNILTERGCDHLVDLVPSSTSFQ 152 (323)
Q Consensus 80 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp~-------~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~ 152 (323)
.+.+|++|++..+. ....+.. +..+++|+.+++..+.. .+..+..+..+ .+..+......+.....++
T Consensus 395 ~~~~L~~L~~~~~~-~~~~~~~---~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l-~ls~n~l~~~~~~~~~~~~ 469 (635)
T 4g8a_A 395 GTISLKYLDLSFNG-VITMSSN---FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL-DISHTHTRVAFNGIFNGLS 469 (635)
T ss_dssp SCSCCCEEECCSCS-EEEECSC---CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEE-ECTTSCCEECCTTTTTTCT
T ss_pred hhhhhhhhhccccc-ccccccc---ccccccccchhhhhccccccccccccccccccccc-cccccccccccccccccch
Confidence 45566666666553 2223322 23677788887776621 12223333333 2344433333445566788
Q ss_pred CCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCcc
Q 020667 153 NLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCA 232 (323)
Q Consensus 153 ~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~ 232 (323)
+|+.|++++|.....+. +..+..+++|+.|++++|. +..++ ...+..+++|++|+++++ +++.++... +
T Consensus 470 ~L~~L~Ls~N~~~~~~~-~~~~~~l~~L~~L~Ls~N~-L~~l~-------~~~f~~l~~L~~L~Ls~N-~l~~l~~~~-~ 538 (635)
T 4g8a_A 470 SLEVLKMAGNSFQENFL-PDIFTELRNLTFLDLSQCQ-LEQLS-------PTAFNSLSSLQVLNMSHN-NFFSLDTFP-Y 538 (635)
T ss_dssp TCCEEECTTCEEGGGEE-CSCCTTCTTCCEEECTTSC-CCEEC-------TTTTTTCTTCCEEECTTS-CCCBCCCGG-G
T ss_pred hhhhhhhhhcccccccC-chhhhhccccCEEECCCCc-cCCcC-------hHHHcCCCCCCEEECCCC-cCCCCChhH-H
Confidence 99999999887555432 4457788999999999885 66664 244567899999999996 788886643 4
Q ss_pred ccCCcccEEeecCCCCCcccCCCCCCC-CCcceeEccC
Q 020667 233 FKFPSLERLVLDDCPSMKIFSEGNSST-PKLHEVQWPG 269 (323)
Q Consensus 233 ~~l~~L~~L~l~~c~~l~~lp~~~~~~-~~L~~L~l~~ 269 (323)
..+++|++|+++++...+..|..+..+ ++|+.|++.+
T Consensus 539 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 539 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp TTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred hCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeC
Confidence 678999999998866555556666666 6899999943
No 85
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.40 E-value=2.2e-12 Score=106.24 Aligned_cols=149 Identities=17% Similarity=0.209 Sum_probs=106.6
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccccc-cc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTS-FC 99 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-~~ 99 (323)
.+++|++|++++ +.++.+ |. +..+++|++|++++| .+..+ +.+..+++|++|+++++. +.. .+
T Consensus 42 ~l~~L~~L~l~~-n~i~~l-~~--l~~l~~L~~L~l~~n-~~~~~----------~~l~~l~~L~~L~l~~n~-l~~~~~ 105 (197)
T 4ezg_A 42 QMNSLTYITLAN-INVTDL-TG--IEYAHNIKDLTINNI-HATNY----------NPISGLSNLERLRIMGKD-VTSDKI 105 (197)
T ss_dssp HHHTCCEEEEES-SCCSCC-TT--GGGCTTCSEEEEESC-CCSCC----------GGGTTCTTCCEEEEECTT-CBGGGS
T ss_pred hcCCccEEeccC-CCccCh-HH--HhcCCCCCEEEccCC-CCCcc----------hhhhcCCCCCEEEeECCc-cCcccC
Confidence 789999999998 677764 64 789999999999998 44411 133478999999999874 443 44
Q ss_pred ccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhcccc
Q 020667 100 TSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVR 179 (323)
Q Consensus 100 ~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~ 179 (323)
.. ...+++|++|++++|.-. ...+..+..+++|++|++++|..++++ + .+..+++
T Consensus 106 ~~---l~~l~~L~~L~Ls~n~i~-------------------~~~~~~l~~l~~L~~L~L~~n~~i~~~--~-~l~~l~~ 160 (197)
T 4ezg_A 106 PN---LSGLTSLTLLDISHSAHD-------------------DSILTKINTLPKVNSIDLSYNGAITDI--M-PLKTLPE 160 (197)
T ss_dssp CC---CTTCTTCCEEECCSSBCB-------------------GGGHHHHTTCSSCCEEECCSCTBCCCC--G-GGGGCSS
T ss_pred hh---hcCCCCCCEEEecCCccC-------------------cHhHHHHhhCCCCCEEEccCCCCcccc--H-hhcCCCC
Confidence 44 347899999999887210 011233556788888888888756666 2 4677888
Q ss_pred ccEEEEccCcccceeeeccCcccccccccccccCeeecccc
Q 020667 180 LEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNL 220 (323)
Q Consensus 180 L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c 220 (323)
|+.|++++|. +.+++ .+..+++|+.|++.+.
T Consensus 161 L~~L~l~~n~-i~~~~---------~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 161 LKSLNIQFDG-VHDYR---------GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CCEEECTTBC-CCCCT---------TGGGCSSCCEEEECBC
T ss_pred CCEEECCCCC-CcChH---------HhccCCCCCEEEeeCc
Confidence 8888888875 44443 2357788888888874
No 86
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.39 E-value=3.2e-12 Score=105.28 Aligned_cols=151 Identities=20% Similarity=0.244 Sum_probs=89.3
Q ss_pred hcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccCccccCCCCccEEEEcCCchhhhh
Q 020667 46 SSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCPKFMER 125 (323)
Q Consensus 46 ~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp~~~~~ 125 (323)
+.+++|+.|+++++. +. .++ .+..+++|++|++++| .+..++. ...+++|++|++++|.
T Consensus 41 ~~l~~L~~L~l~~n~-i~--~l~--------~l~~l~~L~~L~l~~n-~~~~~~~----l~~l~~L~~L~l~~n~----- 99 (197)
T 4ezg_A 41 AQMNSLTYITLANIN-VT--DLT--------GIEYAHNIKDLTINNI-HATNYNP----ISGLSNLERLRIMGKD----- 99 (197)
T ss_dssp HHHHTCCEEEEESSC-CS--CCT--------TGGGCTTCSEEEEESC-CCSCCGG----GTTCTTCCEEEEECTT-----
T ss_pred hhcCCccEEeccCCC-cc--ChH--------HHhcCCCCCEEEccCC-CCCcchh----hhcCCCCCEEEeECCc-----
Confidence 466777777777653 22 111 2336777777777776 4444432 2357777777776652
Q ss_pred ccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccc
Q 020667 126 YNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDE 205 (323)
Q Consensus 126 l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~ 205 (323)
.....+..+..+++|++|++++|...... +..+..+++|++|++++|..+++++ .
T Consensus 100 --------------l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~--~~~l~~l~~L~~L~L~~n~~i~~~~---------~ 154 (197)
T 4ezg_A 100 --------------VTSDKIPNLSGLTSLTLLDISHSAHDDSI--LTKINTLPKVNSIDLSYNGAITDIM---------P 154 (197)
T ss_dssp --------------CBGGGSCCCTTCTTCCEEECCSSBCBGGG--HHHHTTCSSCCEEECCSCTBCCCCG---------G
T ss_pred --------------cCcccChhhcCCCCCCEEEecCCccCcHh--HHHHhhCCCCCEEEccCCCCccccH---------h
Confidence 01112344556777788888777532222 4456677777777777776555553 2
Q ss_pred cccccccCeeecccccccceecCCCccccCCcccEEeecCC
Q 020667 206 VITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDC 246 (323)
Q Consensus 206 ~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c 246 (323)
+..+++|+.|++++| .++.++ ....+++|++|+++++
T Consensus 155 l~~l~~L~~L~l~~n-~i~~~~---~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 155 LKTLPELKSLNIQFD-GVHDYR---GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp GGGCSSCCEEECTTB-CCCCCT---TGGGCSSCCEEEECBC
T ss_pred hcCCCCCCEEECCCC-CCcChH---HhccCCCCCEEEeeCc
Confidence 346677777777775 455554 2345667777777654
No 87
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.38 E-value=2.6e-12 Score=112.49 Aligned_cols=168 Identities=13% Similarity=0.231 Sum_probs=101.3
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCT 100 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 100 (323)
.+++|++|++++ +.++.+ +. +..+++|++|+++++. +.. +.. +..+++|++|+++++ .+..++.
T Consensus 44 ~l~~L~~L~l~~-~~i~~~-~~--~~~l~~L~~L~L~~n~-l~~--~~~--------l~~l~~L~~L~l~~n-~l~~~~~ 107 (291)
T 1h6t_A 44 ELNSIDQIIANN-SDIKSV-QG--IQYLPNVTKLFLNGNK-LTD--IKP--------LANLKNLGWLFLDEN-KVKDLSS 107 (291)
T ss_dssp HHHTCCEEECTT-SCCCCC-TT--GGGCTTCCEEECCSSC-CCC--CGG--------GTTCTTCCEEECCSS-CCCCGGG
T ss_pred hcCcccEEEccC-CCcccC-hh--HhcCCCCCEEEccCCc-cCC--Ccc--------cccCCCCCEEECCCC-cCCCChh
Confidence 567777777777 356654 44 5677777777777663 221 111 336777777777776 3555443
Q ss_pred cCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccc
Q 020667 101 SNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRL 180 (323)
Q Consensus 101 ~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L 180 (323)
...+++|++|++++|. + ..+ +.+..+++|++|++++|. ++.+ ..+..+++|
T Consensus 108 ----l~~l~~L~~L~L~~n~--------i------------~~~-~~l~~l~~L~~L~l~~n~-l~~~---~~l~~l~~L 158 (291)
T 1h6t_A 108 ----LKDLKKLKSLSLEHNG--------I------------SDI-NGLVHLPQLESLYLGNNK-ITDI---TVLSRLTKL 158 (291)
T ss_dssp ----GTTCTTCCEEECTTSC--------C------------CCC-GGGGGCTTCCEEECCSSC-CCCC---GGGGGCTTC
T ss_pred ----hccCCCCCEEECCCCc--------C------------CCC-hhhcCCCCCCEEEccCCc-CCcc---hhhccCCCC
Confidence 2367777777777652 1 111 234456677777777664 4443 245667777
Q ss_pred cEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCC
Q 020667 181 EYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCP 247 (323)
Q Consensus 181 ~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~ 247 (323)
+.|++++|. +..++ . +..+++|+.|+++++ .++.++. ...+++|+.|++++++
T Consensus 159 ~~L~L~~N~-l~~~~--------~-l~~l~~L~~L~L~~N-~i~~l~~---l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 159 DTLSLEDNQ-ISDIV--------P-LAGLTKLQNLYLSKN-HISDLRA---LAGLKNLDVLELFSQE 211 (291)
T ss_dssp SEEECCSSC-CCCCG--------G-GTTCTTCCEEECCSS-CCCBCGG---GTTCTTCSEEEEEEEE
T ss_pred CEEEccCCc-cccch--------h-hcCCCccCEEECCCC-cCCCChh---hccCCCCCEEECcCCc
Confidence 777777664 44443 1 356677777777775 5666542 3457777777776653
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.37 E-value=1.1e-11 Score=105.94 Aligned_cols=157 Identities=15% Similarity=0.168 Sum_probs=114.0
Q ss_pred CCcCEEecccccccccccccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCcccc-CCCCCCCCCCCEEEee
Q 020667 82 PQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDL-VPSSTSFQNLTNLVVS 160 (323)
Q Consensus 82 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l-~~~~~~l~~L~~L~l~ 160 (323)
++++.|+++++ .+..++... +..+++|++|++++|. +..+ +..+..+++|++|+++
T Consensus 35 ~~l~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~L~~n~--------------------l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 35 ADTEKLDLQST-GLATLSDAT--FRGLTKLTWLNLDYNQ--------------------LQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp TTCCEEECTTS-CCCCCCTTT--TTTCTTCCEEECTTSC--------------------CCCCCTTTTTTCTTCCEEECT
T ss_pred CCCCEEEccCC-CcCccCHhH--hcCcccCCEEECCCCc--------------------CCccCHhHhccCCcCCEEECC
Confidence 68999999987 455555432 2478899999988762 1122 2336778999999999
Q ss_pred cCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccE
Q 020667 161 CCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLER 240 (323)
Q Consensus 161 ~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~ 240 (323)
+|. ++.++ +..+..+++|++|+++++. +..++ ...+..+++|++|+++++ +++.++... +..+++|++
T Consensus 92 ~n~-l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~-------~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~ 159 (251)
T 3m19_A 92 NNQ-LASLP-LGVFDHLTQLDKLYLGGNQ-LKSLP-------SGVFDRLTKLKELRLNTN-QLQSIPAGA-FDKLTNLQT 159 (251)
T ss_dssp TSC-CCCCC-TTTTTTCTTCCEEECCSSC-CCCCC-------TTTTTTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCE
T ss_pred CCc-ccccC-hhHhcccCCCCEEEcCCCc-CCCcC-------hhHhccCCcccEEECcCC-cCCccCHHH-cCcCcCCCE
Confidence 885 55543 3456789999999999874 66665 123457899999999996 788887643 467899999
Q ss_pred EeecCCCCCcccCC-CCCCCCCcceeEccCcccccccc
Q 020667 241 LVLDDCPSMKIFSE-GNSSTPKLHEVQWPGEARWAWKD 277 (323)
Q Consensus 241 L~l~~c~~l~~lp~-~~~~~~~L~~L~l~~~~~~~~~~ 277 (323)
|+++++ .++.+|. .+..+++|+.|++ ..+.+.+
T Consensus 160 L~L~~N-~l~~~~~~~~~~l~~L~~L~l---~~N~~~c 193 (251)
T 3m19_A 160 LSLSTN-QLQSVPHGAFDRLGKLQTITL---FGNQFDC 193 (251)
T ss_dssp EECCSS-CCSCCCTTTTTTCTTCCEEEC---CSCCBCT
T ss_pred EECCCC-cCCccCHHHHhCCCCCCEEEe---eCCceeC
Confidence 999886 4555654 5668899999999 4455544
No 89
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.37 E-value=7.8e-14 Score=133.84 Aligned_cols=206 Identities=12% Similarity=0.050 Sum_probs=125.0
Q ss_pred HhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccCccccCCCCccEEEEcC------
Q 020667 45 VSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISG------ 118 (323)
Q Consensus 45 ~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~------ 118 (323)
+..+++|++|++++|. +....+ ...+..+++|++|++.++-.-..++.. ...+++|++|++.+
T Consensus 289 ~~~~~~L~~L~Ls~~~-l~~~~~-------~~~~~~~~~L~~L~L~~~~~~~~l~~~---~~~~~~L~~L~L~~g~~~~~ 357 (592)
T 3ogk_B 289 FPFAAQIRKLDLLYAL-LETEDH-------CTLIQKCPNLEVLETRNVIGDRGLEVL---AQYCKQLKRLRIERGADEQG 357 (592)
T ss_dssp GGGGGGCCEEEETTCC-CCHHHH-------HHHHTTCTTCCEEEEEGGGHHHHHHHH---HHHCTTCCEEEEECCCCSST
T ss_pred HhhcCCCcEEecCCCc-CCHHHH-------HHHHHhCcCCCEEeccCccCHHHHHHH---HHhCCCCCEEEeecCccccc
Confidence 5567788888888776 331010 011237899999999844222223222 23688999999995
Q ss_pred ----Cch--------hhhhccCCcceeeecCCCCccc-cCCCCC-CCCCCCEEEeec---CcCcceec----chhHHhcc
Q 020667 119 ----CPK--------FMERYNRTTNILTERGCDHLVD-LVPSST-SFQNLTNLVVSC---CKGLKIVL----TFSIAKTL 177 (323)
Q Consensus 119 ----cp~--------~~~~l~~L~~L~~i~~~~~l~~-l~~~~~-~l~~L~~L~l~~---c~~l~~l~----~~~~l~~l 177 (323)
|.. ....+++|++| .+ .|..++. .+..+. .+++|++|+++. |+.+++.+ ....+.++
T Consensus 358 ~~~~~~~~~~~~~~~l~~~~~~L~~L-~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~ 435 (592)
T 3ogk_B 358 MEDEEGLVSQRGLIALAQGCQELEYM-AV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC 435 (592)
T ss_dssp TSSTTCCCCHHHHHHHHHHCTTCSEE-EE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHC
T ss_pred cccccCccCHHHHHHHHhhCccCeEE-Ee-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhC
Confidence 632 22346778777 34 4444432 122233 378899999984 55666532 13346778
Q ss_pred ccccEEEEccCcc-cceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCc--ccCC
Q 020667 178 VRLEYMEIESCDR-ITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMK--IFSE 254 (323)
Q Consensus 178 ~~L~~L~l~~c~~-l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~--~lp~ 254 (323)
++|++|++++|.. +..... ......+++|+.|++++| .++..........+++|++|++++|+ ++ .++.
T Consensus 436 ~~L~~L~L~~~~~~l~~~~~------~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~ 507 (592)
T 3ogk_B 436 KKLRRFAFYLRQGGLTDLGL------SYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAA 507 (592)
T ss_dssp TTCCEEEEECCGGGCCHHHH------HHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHH
T ss_pred CCCCEEEEecCCCCccHHHH------HHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHH
Confidence 9999999987664 222110 001134788999999987 45542222223467899999999998 43 2444
Q ss_pred CCCCCCCcceeEccCcc
Q 020667 255 GNSSTPKLHEVQWPGEA 271 (323)
Q Consensus 255 ~~~~~~~L~~L~l~~~~ 271 (323)
....+++|++|++.++.
T Consensus 508 ~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 508 AVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHCSSCCEEEEESCB
T ss_pred HHHhcCccCeeECcCCc
Confidence 44468899999995543
No 90
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.37 E-value=1.9e-11 Score=117.83 Aligned_cols=249 Identities=16% Similarity=0.142 Sum_probs=150.7
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCC----------CCceEEeeccccccCCCccccCCcCEEecc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECP----------VLKELIVMDNQEERKNNNVMFPQLQYLKMF 90 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~----------~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~ 90 (323)
.+.+++.+.+.+ ..+..+ +. +....+|+.|+++++. .++.+.+..+..........+++|+.|+++
T Consensus 304 ~~~~l~~l~~~~-~~~~~~-~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls 379 (635)
T 4g8a_A 304 CLTNVSSFSLVS-VTIERV-KD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLS 379 (635)
T ss_dssp GGTTCSEEEEES-CEEEEC-GG--GGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECC
T ss_pred hhcccccccccc-cccccc-cc--cccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhh
Confidence 566777777776 334443 33 4566778888877652 223223332222222233356777777777
Q ss_pred cccccccccccCccccCCCCccEEEEcCCc-----hhhhhccCCcceeeecCCCCccccC-CCCCCCCCCCEEEeecCcC
Q 020667 91 NLENFTSFCTSNLGILEFPSLKELWISGCP-----KFMERYNRTTNILTERGCDHLVDLV-PSSTSFQNLTNLVVSCCKG 164 (323)
Q Consensus 91 ~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp-----~~~~~l~~L~~L~~i~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~ 164 (323)
++.. ............+.+|+.+++..+. ..+..+++++.+ .+..+......+ .....+++++.++++.+.
T Consensus 380 ~n~l-~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l-~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~- 456 (635)
T 4g8a_A 380 RNGL-SFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHL-DFQHSNLKQMSEFSVFLSLRNLIYLDISHTH- 456 (635)
T ss_dssp SSCC-BEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEE-ECTTSEEESTTSSCTTTTCTTCCEEECTTSC-
T ss_pred cccc-ccccccccchhhhhhhhhhhccccccccccccccccccccch-hhhhccccccccccccccccccccccccccc-
Confidence 6532 2111110002356677777777662 122223444444 233333332222 235577889999998875
Q ss_pred cceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeec
Q 020667 165 LKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLD 244 (323)
Q Consensus 165 l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~ 244 (323)
+.... +..+..+++|+.|++++|.....+. ...+..+++|++|+++++ +++.++... +..+++|++|+++
T Consensus 457 l~~~~-~~~~~~~~~L~~L~Ls~N~~~~~~~-------~~~~~~l~~L~~L~Ls~N-~L~~l~~~~-f~~l~~L~~L~Ls 526 (635)
T 4g8a_A 457 TRVAF-NGIFNGLSSLEVLKMAGNSFQENFL-------PDIFTELRNLTFLDLSQC-QLEQLSPTA-FNSLSSLQVLNMS 526 (635)
T ss_dssp CEECC-TTTTTTCTTCCEEECTTCEEGGGEE-------CSCCTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECT
T ss_pred ccccc-ccccccchhhhhhhhhhcccccccC-------chhhhhccccCEEECCCC-ccCCcChHH-HcCCCCCCEEECC
Confidence 33332 4556788999999999988666554 134568899999999997 788887654 5679999999998
Q ss_pred CCCCCcccCC-CCCCCCCcceeEccCccccccccc-------hhhhceeeeccc
Q 020667 245 DCPSMKIFSE-GNSSTPKLHEVQWPGEARWAWKDD-------LNTTIQKVIFPA 290 (323)
Q Consensus 245 ~c~~l~~lp~-~~~~~~~L~~L~l~~~~~~~~~~~-------l~~~l~~l~~~~ 290 (323)
++ .++.++. .+..+++|+.|++ ..+.+.+. ++++++.+.+.+
T Consensus 527 ~N-~l~~l~~~~~~~l~~L~~L~L---s~N~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 527 HN-NFFSLDTFPYKCLNSLQVLDY---SLNHIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp TS-CCCBCCCGGGTTCTTCCEEEC---TTSCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred CC-cCCCCChhHHhCCCCCCEEEC---CCCcCCCCCHHHHHhhhCcCCEEEeeC
Confidence 86 5666654 4668899999999 44444333 334566666655
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.36 E-value=1.8e-12 Score=113.52 Aligned_cols=188 Identities=14% Similarity=0.169 Sum_probs=138.9
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCT 100 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 100 (323)
.+.++..+.+.. ..++++.+ ...+++|+.|++++|. +..+ +.+..+++|++|+++++ .+..++.
T Consensus 22 ~l~~~~~~~l~~-~~~~~~~~---~~~l~~L~~L~l~~~~-i~~~----------~~~~~l~~L~~L~L~~n-~l~~~~~ 85 (291)
T 1h6t_A 22 AFAETIKDNLKK-KSVTDAVT---QNELNSIDQIIANNSD-IKSV----------QGIQYLPNVTKLFLNGN-KLTDIKP 85 (291)
T ss_dssp HHHHHHHHHTTC-SCTTSEEC---HHHHHTCCEEECTTSC-CCCC----------TTGGGCTTCCEEECCSS-CCCCCGG
T ss_pred HHHHHHHHHhcC-CCcccccc---hhhcCcccEEEccCCC-cccC----------hhHhcCCCCCEEEccCC-ccCCCcc
Confidence 345556666665 55665423 4678999999999874 3311 12347899999999988 5666654
Q ss_pred cCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccc
Q 020667 101 SNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRL 180 (323)
Q Consensus 101 ~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L 180 (323)
. ..+++|++|++++|. + ..+ +.+..+++|++|++++|. ++.+ ..+..+++|
T Consensus 86 -l---~~l~~L~~L~l~~n~--------l------------~~~-~~l~~l~~L~~L~L~~n~-i~~~---~~l~~l~~L 136 (291)
T 1h6t_A 86 -L---ANLKNLGWLFLDENK--------V------------KDL-SSLKDLKKLKSLSLEHNG-ISDI---NGLVHLPQL 136 (291)
T ss_dssp -G---TTCTTCCEEECCSSC--------C------------CCG-GGGTTCTTCCEEECTTSC-CCCC---GGGGGCTTC
T ss_pred -c---ccCCCCCEEECCCCc--------C------------CCC-hhhccCCCCCEEECCCCc-CCCC---hhhcCCCCC
Confidence 2 479999999998862 1 112 236778999999999985 5554 347889999
Q ss_pred cEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCCCCC
Q 020667 181 EYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTP 260 (323)
Q Consensus 181 ~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~ 260 (323)
+.|++++|. +..++ .+..+++|+.|+++++ .++.++. ...+++|++|++++| .++.+|. +..++
T Consensus 137 ~~L~l~~n~-l~~~~---------~l~~l~~L~~L~L~~N-~l~~~~~---l~~l~~L~~L~L~~N-~i~~l~~-l~~l~ 200 (291)
T 1h6t_A 137 ESLYLGNNK-ITDIT---------VLSRLTKLDTLSLEDN-QISDIVP---LAGLTKLQNLYLSKN-HISDLRA-LAGLK 200 (291)
T ss_dssp CEEECCSSC-CCCCG---------GGGGCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCBCGG-GTTCT
T ss_pred CEEEccCCc-CCcch---------hhccCCCCCEEEccCC-ccccchh---hcCCCccCEEECCCC-cCCCChh-hccCC
Confidence 999999875 44442 3468899999999997 7777754 467999999999886 6777775 67899
Q ss_pred CcceeEccC
Q 020667 261 KLHEVQWPG 269 (323)
Q Consensus 261 ~L~~L~l~~ 269 (323)
+|+.|++.+
T Consensus 201 ~L~~L~l~~ 209 (291)
T 1h6t_A 201 NLDVLELFS 209 (291)
T ss_dssp TCSEEEEEE
T ss_pred CCCEEECcC
Confidence 999999944
No 92
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.36 E-value=4.1e-12 Score=120.96 Aligned_cols=188 Identities=15% Similarity=0.119 Sum_probs=136.6
Q ss_pred cccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccCc
Q 020667 24 NLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSNL 103 (323)
Q Consensus 24 ~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 103 (323)
+|++|++++ ++++++ |..+ +++|++|+++++. ++ .++ ..+++|++|+++++ .++.++. ..
T Consensus 60 ~L~~L~Ls~-n~L~~l-p~~l---~~~L~~L~Ls~N~-l~--~ip----------~~l~~L~~L~Ls~N-~l~~ip~-l~ 119 (571)
T 3cvr_A 60 QFSELQLNR-LNLSSL-PDNL---PPQITVLEITQNA-LI--SLP----------ELPASLEYLDACDN-RLSTLPE-LP 119 (571)
T ss_dssp TCSEEECCS-SCCSCC-CSCC---CTTCSEEECCSSC-CS--CCC----------CCCTTCCEEECCSS-CCSCCCC-CC
T ss_pred CccEEEeCC-CCCCcc-CHhH---cCCCCEEECcCCC-Cc--ccc----------cccCCCCEEEccCC-CCCCcch-hh
Confidence 899999998 578884 6642 4889999999874 44 222 15789999999987 5666665 22
Q ss_pred cccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEE
Q 020667 104 GILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYM 183 (323)
Q Consensus 104 ~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L 183 (323)
. +|++|++++|. +..+|. .+++|+.|++++|. ++.++ . .+++|+.|
T Consensus 120 ---~--~L~~L~Ls~N~--------------------l~~lp~---~l~~L~~L~Ls~N~-l~~lp--~---~l~~L~~L 165 (571)
T 3cvr_A 120 ---A--SLKHLDVDNNQ--------------------LTMLPE---LPALLEYINADNNQ-LTMLP--E---LPTSLEVL 165 (571)
T ss_dssp ---T--TCCEEECCSSC--------------------CSCCCC---CCTTCCEEECCSSC-CSCCC--C---CCTTCCEE
T ss_pred ---c--CCCEEECCCCc--------------------CCCCCC---cCccccEEeCCCCc-cCcCC--C---cCCCcCEE
Confidence 2 89999988762 222333 57889999999885 55553 2 57889999
Q ss_pred EEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcc-------cEEeecCCCCCcccCCCC
Q 020667 184 EIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSL-------ERLVLDDCPSMKIFSEGN 256 (323)
Q Consensus 184 ~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L-------~~L~l~~c~~l~~lp~~~ 256 (323)
++++|. ++.++ . +. ++|+.|+++++ +++.++. . . .+| ++|++++| .++.+|.++
T Consensus 166 ~Ls~N~-L~~lp--------~-l~--~~L~~L~Ls~N-~L~~lp~-~--~--~~L~~~~~~L~~L~Ls~N-~l~~lp~~l 226 (571)
T 3cvr_A 166 SVRNNQ-LTFLP--------E-LP--ESLEALDVSTN-LLESLPA-V--P--VRNHHSEETEIFFRCREN-RITHIPENI 226 (571)
T ss_dssp ECCSSC-CSCCC--------C-CC--TTCCEEECCSS-CCSSCCC-C--C----------CCEEEECCSS-CCCCCCGGG
T ss_pred ECCCCC-CCCcc--------h-hh--CCCCEEECcCC-CCCchhh-H--H--HhhhcccccceEEecCCC-cceecCHHH
Confidence 999875 55566 2 22 89999999986 7887765 2 1 266 99999875 677899888
Q ss_pred CCCCCcceeEccCccccccccchhhhceeee
Q 020667 257 SSTPKLHEVQWPGEARWAWKDDLNTTIQKVI 287 (323)
Q Consensus 257 ~~~~~L~~L~l~~~~~~~~~~~l~~~l~~l~ 287 (323)
..+++|+.|++ ..+.+.+.+|..+..+.
T Consensus 227 ~~l~~L~~L~L---~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 227 LSLDPTCTIIL---EDNPLSSRIRESLSQQT 254 (571)
T ss_dssp GGSCTTEEEEC---CSSSCCHHHHHHHHHHH
T ss_pred hcCCCCCEEEe---eCCcCCCcCHHHHHHhh
Confidence 88999999999 77777777777766543
No 93
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.35 E-value=2.7e-12 Score=123.29 Aligned_cols=170 Identities=13% Similarity=0.234 Sum_probs=103.9
Q ss_pred ccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccccc
Q 020667 18 MSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTS 97 (323)
Q Consensus 18 ~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 97 (323)
+. .+++|++|++++ +.++.+ |. +..+++|+.|+|++|. +.. ++. +..+++|+.|++++| .+..
T Consensus 39 ~~-~L~~L~~L~l~~-n~i~~l-~~--l~~l~~L~~L~Ls~N~-l~~--~~~--------l~~l~~L~~L~Ls~N-~l~~ 101 (605)
T 1m9s_A 39 QN-ELNSIDQIIANN-SDIKSV-QG--IQYLPNVTKLFLNGNK-LTD--IKP--------LTNLKNLGWLFLDEN-KIKD 101 (605)
T ss_dssp HH-HHTTCCCCBCTT-CCCCCC-TT--GGGCTTCCEEECTTSC-CCC--CGG--------GGGCTTCCEEECCSS-CCCC
T ss_pred hh-cCCCCCEEECcC-CCCCCC-hH--HccCCCCCEEEeeCCC-CCC--Chh--------hccCCCCCEEECcCC-CCCC
Confidence 44 688899999988 457664 54 6789999999998874 331 111 347889999999887 4665
Q ss_pred ccccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhcc
Q 020667 98 FCTSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTL 177 (323)
Q Consensus 98 ~~~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l 177 (323)
++. ...+++|+.|++++|. +. .+ +.+..+++|+.|++++|. +..+ ..+..+
T Consensus 102 l~~----l~~l~~L~~L~Ls~N~--------l~------------~l-~~l~~l~~L~~L~Ls~N~-l~~l---~~l~~l 152 (605)
T 1m9s_A 102 LSS----LKDLKKLKSLSLEHNG--------IS------------DI-NGLVHLPQLESLYLGNNK-ITDI---TVLSRL 152 (605)
T ss_dssp CTT----STTCTTCCEEECTTSC--------CC------------CC-GGGGGCTTCSEEECCSSC-CCCC---GGGGSC
T ss_pred Chh----hccCCCCCEEEecCCC--------CC------------CC-ccccCCCccCEEECCCCc-cCCc---hhhccc
Confidence 542 3478889999888872 01 11 224455666666666653 3333 235566
Q ss_pred ccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCC
Q 020667 178 VRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCP 247 (323)
Q Consensus 178 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~ 247 (323)
++|+.|++++|. +..++ . +..+++|+.|+|+++ .+..++. +..+++|+.|++++|+
T Consensus 153 ~~L~~L~Ls~N~-l~~~~--------~-l~~l~~L~~L~Ls~N-~i~~l~~---l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 153 TKLDTLSLEDNQ-ISDIV--------P-LAGLTKLQNLYLSKN-HISDLRA---LAGLKNLDVLELFSQE 208 (605)
T ss_dssp TTCSEEECCSSC-CCCCG--------G-GTTCTTCCEEECCSS-CCCBCGG---GTTCTTCSEEECCSEE
T ss_pred CCCCEEECcCCc-CCCch--------h-hccCCCCCEEECcCC-CCCCChH---HccCCCCCEEEccCCc
Confidence 666666666653 33332 1 345666666666664 4555431 3456666666666544
No 94
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.35 E-value=1.8e-12 Score=124.54 Aligned_cols=188 Identities=14% Similarity=0.181 Sum_probs=140.0
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCT 100 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 100 (323)
.+.++..+.+.. ..+.++.+ ...+++|+.|+++++. +.. ++ .+..+++|+.|+++++ .+..++.
T Consensus 19 ~l~~l~~l~l~~-~~i~~~~~---~~~L~~L~~L~l~~n~-i~~--l~--------~l~~l~~L~~L~Ls~N-~l~~~~~ 82 (605)
T 1m9s_A 19 AFAETIKDNLKK-KSVTDAVT---QNELNSIDQIIANNSD-IKS--VQ--------GIQYLPNVTKLFLNGN-KLTDIKP 82 (605)
T ss_dssp HHHHHHHHHTTC-SCTTSEEC---HHHHTTCCCCBCTTCC-CCC--CT--------TGGGCTTCCEEECTTS-CCCCCGG
T ss_pred HHHHHHHHhccC-CCcccccc---hhcCCCCCEEECcCCC-CCC--Ch--------HHccCCCCCEEEeeCC-CCCCChh
Confidence 456677777776 55666533 4688999999999875 331 11 2347999999999988 4666654
Q ss_pred cCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccc
Q 020667 101 SNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRL 180 (323)
Q Consensus 101 ~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L 180 (323)
...+++|+.|++++|. +. .+ +.+..+++|+.|++++|. +..+ ..+..+++|
T Consensus 83 ----l~~l~~L~~L~Ls~N~--------l~------------~l-~~l~~l~~L~~L~Ls~N~-l~~l---~~l~~l~~L 133 (605)
T 1m9s_A 83 ----LTNLKNLGWLFLDENK--------IK------------DL-SSLKDLKKLKSLSLEHNG-ISDI---NGLVHLPQL 133 (605)
T ss_dssp ----GGGCTTCCEEECCSSC--------CC------------CC-TTSTTCTTCCEEECTTSC-CCCC---GGGGGCTTC
T ss_pred ----hccCCCCCEEECcCCC--------CC------------CC-hhhccCCCCCEEEecCCC-CCCC---ccccCCCcc
Confidence 2479999999998872 11 12 357788999999999985 5554 347889999
Q ss_pred cEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCCCCC
Q 020667 181 EYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTP 260 (323)
Q Consensus 181 ~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~ 260 (323)
+.|++++|. +..++ .+..+++|+.|+|+++ .+..++. +..+++|+.|++++| .+..+|. +..++
T Consensus 134 ~~L~Ls~N~-l~~l~---------~l~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N-~i~~l~~-l~~l~ 197 (605)
T 1m9s_A 134 ESLYLGNNK-ITDIT---------VLSRLTKLDTLSLEDN-QISDIVP---LAGLTKLQNLYLSKN-HISDLRA-LAGLK 197 (605)
T ss_dssp SEEECCSSC-CCCCG---------GGGSCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCBCGG-GTTCT
T ss_pred CEEECCCCc-cCCch---------hhcccCCCCEEECcCC-cCCCchh---hccCCCCCEEECcCC-CCCCChH-HccCC
Confidence 999999985 44442 3468899999999997 6777654 467999999999886 5666764 66899
Q ss_pred CcceeEccC
Q 020667 261 KLHEVQWPG 269 (323)
Q Consensus 261 ~L~~L~l~~ 269 (323)
+|+.|++.+
T Consensus 198 ~L~~L~L~~ 206 (605)
T 1m9s_A 198 NLDVLELFS 206 (605)
T ss_dssp TCSEEECCS
T ss_pred CCCEEEccC
Confidence 999999944
No 95
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.34 E-value=1.5e-11 Score=118.41 Aligned_cols=198 Identities=19% Similarity=0.114 Sum_probs=124.5
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCC---------CCceEEeeccc-cccCCCccccCCcCEEecc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECP---------VLKELIVMDNQ-EERKNNNVMFPQLQYLKMF 90 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~---------~l~~l~~~~~~-~~~~~~~~~l~~L~~L~l~ 90 (323)
.+++|++|++++ +.++++ |. .+++|++|+++++. +++.+.+..+. ...+. .+++|++|+++
T Consensus 79 ~l~~L~~L~Ls~-N~l~~l-p~----~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls 149 (622)
T 3g06_A 79 LPPELRTLEVSG-NQLTSL-PV----LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV---LPPGLQELSVS 149 (622)
T ss_dssp CCTTCCEEEECS-CCCSCC-CC----CCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECC
T ss_pred cCCCCCEEEcCC-CcCCcC-CC----CCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCCCCcCCC---CCCCCCEEECc
Confidence 467888888888 567764 54 56788888887663 33433333332 22222 24677777777
Q ss_pred cccccccccccCcc--------------ccCCCCccEEEEcCCch--hhhhccCCcceeeecCCCCccccCCCCCCCCCC
Q 020667 91 NLENFTSFCTSNLG--------------ILEFPSLKELWISGCPK--FMERYNRTTNILTERGCDHLVDLVPSSTSFQNL 154 (323)
Q Consensus 91 ~~~~l~~~~~~~~~--------------~~~l~~L~~L~l~~cp~--~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L 154 (323)
+| .+..++..... ...+++|+.|++++|.- +-..+++|+.| .+.+| .+..+|. .+++|
T Consensus 150 ~N-~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L-~L~~N-~l~~l~~---~~~~L 223 (622)
T 3g06_A 150 DN-QLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKL-WAYNN-RLTSLPA---LPSGL 223 (622)
T ss_dssp SS-CCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEE-ECCSS-CCSSCCC---CCTTC
T ss_pred CC-cCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCccchhhEE-ECcCC-cccccCC---CCCCC
Confidence 66 34444321100 01235666666666521 00112344444 23333 3445543 34789
Q ss_pred CEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCcccc
Q 020667 155 TNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFK 234 (323)
Q Consensus 155 ~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~ 234 (323)
+.|++++| .++.+ + ..+++|+.|++++| .+..++ ..+++|+.|+++++ +++.+|.. +..
T Consensus 224 ~~L~Ls~N-~L~~l--p---~~l~~L~~L~Ls~N-~L~~lp-----------~~~~~L~~L~Ls~N-~L~~lp~~--l~~ 282 (622)
T 3g06_A 224 KELIVSGN-RLTSL--P---VLPSELKELMVSGN-RLTSLP-----------MLPSGLLSLSVYRN-QLTRLPES--LIH 282 (622)
T ss_dssp CEEECCSS-CCSCC--C---CCCTTCCEEECCSS-CCSCCC-----------CCCTTCCEEECCSS-CCCSCCGG--GGG
T ss_pred CEEEccCC-ccCcC--C---CCCCcCcEEECCCC-CCCcCC-----------cccccCcEEeCCCC-CCCcCCHH--Hhh
Confidence 99999988 46655 2 56789999999998 477777 26789999999997 78888753 578
Q ss_pred CCcccEEeecCCCCCcccCC
Q 020667 235 FPSLERLVLDDCPSMKIFSE 254 (323)
Q Consensus 235 l~~L~~L~l~~c~~l~~lp~ 254 (323)
+++|+.|++++|+..+..|.
T Consensus 283 l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 283 LSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp SCTTCEEECCSCCCCHHHHH
T ss_pred ccccCEEEecCCCCCCcCHH
Confidence 99999999999886655443
No 96
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.34 E-value=5.9e-14 Score=130.59 Aligned_cols=107 Identities=15% Similarity=0.154 Sum_probs=52.6
Q ss_pred cccCCcCEEecccccccccccccCc--c-ccCCCCccEEEEcCCc----------hhhhhccCCcceeeecCCCCccc--
Q 020667 79 VMFPQLQYLKMFNLENFTSFCTSNL--G-ILEFPSLKELWISGCP----------KFMERYNRTTNILTERGCDHLVD-- 143 (323)
Q Consensus 79 ~~l~~L~~L~l~~~~~l~~~~~~~~--~-~~~l~~L~~L~l~~cp----------~~~~~l~~L~~L~~i~~~~~l~~-- 143 (323)
..+++|++|+++++. +........ . ....++|++|++++|. ..+..+++|++| ++.+|. ++.
T Consensus 167 ~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L-~Ls~n~-l~~~~ 243 (461)
T 1z7x_W 167 RAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL-ALGSNK-LGDVG 243 (461)
T ss_dssp HHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEE-ECCSSB-CHHHH
T ss_pred hhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEE-eccCCc-CChHH
Confidence 346778888887764 332211100 0 0124577777777772 222334556655 444442 221
Q ss_pred ---cCCC-CCCCCCCCEEEeecCcCcceec---chhHHhccccccEEEEccCc
Q 020667 144 ---LVPS-STSFQNLTNLVVSCCKGLKIVL---TFSIAKTLVRLEYMEIESCD 189 (323)
Q Consensus 144 ---l~~~-~~~l~~L~~L~l~~c~~l~~l~---~~~~l~~l~~L~~L~l~~c~ 189 (323)
+.+. ...+++|++|++++|. ++... .+..+..+++|++|++++|.
T Consensus 244 ~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 244 MAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred HHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 1111 1235667777776663 33311 13334456666666666653
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.33 E-value=1.7e-13 Score=123.70 Aligned_cols=241 Identities=12% Similarity=0.011 Sum_probs=144.3
Q ss_pred ccccccccCCcccEEeeecccccceeccc---hhHhcCC-CccEEEEecCCCCceEEeeccccccCCCccc-cCCcCEEe
Q 020667 14 QVTVMSCGIQNLMHLTLRSCMNLRYLFSS---SIVSSFV-RLQRIEIVECPVLKELIVMDNQEERKNNNVM-FPQLQYLK 88 (323)
Q Consensus 14 ~p~~~~~~l~~L~~L~L~~c~~l~~~~p~---~~~~~l~-~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~-l~~L~~L~ 88 (323)
.|..+. ..++|++|++++ +.+++..+. ..+..++ +|++|++++|. +... ...... ..+.. +++|++|+
T Consensus 14 ~~~~~~-~~~~L~~L~Ls~-n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~-~~~~l~---~~l~~~~~~L~~L~ 86 (362)
T 3goz_A 14 VEEFTS-IPHGVTSLDLSL-NNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFK-NSDELV---QILAAIPANVTSLN 86 (362)
T ss_dssp HHHHHT-SCTTCCEEECTT-SCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGS-CHHHHH---HHHHTSCTTCCEEE
T ss_pred HHHHHh-CCCCceEEEccC-CCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHH-HHHHHH---HHHhccCCCccEEE
Confidence 344344 556699999999 568775441 2356788 89999999884 3311 011111 00111 38999999
Q ss_pred cccccccccccccCc--cccCC-CCccEEEEcCCch------hhh----h-ccCCcceeeecCCCCcc----ccCCCCCC
Q 020667 89 MFNLENFTSFCTSNL--GILEF-PSLKELWISGCPK------FME----R-YNRTTNILTERGCDHLV----DLVPSSTS 150 (323)
Q Consensus 89 l~~~~~l~~~~~~~~--~~~~l-~~L~~L~l~~cp~------~~~----~-l~~L~~L~~i~~~~~l~----~l~~~~~~ 150 (323)
+++|. ++....... ....+ ++|++|++++|.- .+. . ..+|+.| ++.+|..-. .++..+..
T Consensus 87 Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L-~Ls~N~l~~~~~~~l~~~l~~ 164 (362)
T 3goz_A 87 LSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL-NLRGNDLGIKSSDELIQILAA 164 (362)
T ss_dssp CCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEE-ECTTSCGGGSCHHHHHHHHHT
T ss_pred CcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEE-EccCCcCCHHHHHHHHHHHhc
Confidence 99985 443332210 01234 7999999999931 111 1 1467777 566654331 22223334
Q ss_pred CC-CCCEEEeecCcCcceecch---hHHhcc-ccccEEEEccCcccceeeeccCccccccccc-ccccCeeecccccccc
Q 020667 151 FQ-NLTNLVVSCCKGLKIVLTF---SIAKTL-VRLEYMEIESCDRITEIVLVDDVAAKDEVIT-FRELKELKLLNLESLT 224 (323)
Q Consensus 151 l~-~L~~L~l~~c~~l~~l~~~---~~l~~l-~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~-~~~L~~L~l~~c~~L~ 224 (323)
++ +|++|++++|. ++..... ..+..+ ++|++|++++|. ++..... .....+.. .++|++|+++++ .++
T Consensus 165 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~---~l~~~l~~~~~~L~~L~Ls~N-~l~ 238 (362)
T 3goz_A 165 IPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYA---ELAYIFSSIPNHVVSLNLCLN-CLH 238 (362)
T ss_dssp SCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHH---HHHHHHHHSCTTCCEEECCSS-CCC
T ss_pred CCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHH---HHHHHHhcCCCCceEEECcCC-CCC
Confidence 44 89999999985 5443211 133445 599999999986 4431100 00012223 359999999996 666
Q ss_pred eecCC---CccccCCcccEEeecCCC-------CCcccCCCCCCCCCcceeEccC
Q 020667 225 SFCSG---NCAFKFPSLERLVLDDCP-------SMKIFSEGNSSTPKLHEVQWPG 269 (323)
Q Consensus 225 ~l~~~---~~~~~l~~L~~L~l~~c~-------~l~~lp~~~~~~~~L~~L~l~~ 269 (323)
..+.. .....+++|++|++++|. .+..++..+..+++|++|++.+
T Consensus 239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~ 293 (362)
T 3goz_A 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG 293 (362)
T ss_dssp CCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTS
T ss_pred cHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCC
Confidence 65331 122467899999999886 1335666677888999999944
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.33 E-value=3.5e-13 Score=122.67 Aligned_cols=216 Identities=13% Similarity=0.075 Sum_probs=140.0
Q ss_pred ccccCCcccEEeeecc--cccceeccchh------HhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEec
Q 020667 18 MSCGIQNLMHLTLRSC--MNLRYLFSSSI------VSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKM 89 (323)
Q Consensus 18 ~~~~l~~L~~L~L~~c--~~l~~~~p~~~------~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l 89 (323)
+. .+++|++|+|++| +.+++.+|..+ +..+++|++|+++++..-. ......+..+..+++|++|++
T Consensus 56 l~-~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~-----~~~~~l~~~l~~~~~L~~L~L 129 (386)
T 2ca6_A 56 IA-SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP-----TAQEPLIDFLSKHTPLEHLYL 129 (386)
T ss_dssp TT-TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT-----TTHHHHHHHHHHCTTCCEEEC
T ss_pred HH-hCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH-----HHHHHHHHHHHhCCCCCEEEC
Confidence 55 7999999999987 55555556553 3688999999999875221 000112233447899999999
Q ss_pred ccccccccccccCc--cccCC---------CCccEEEEcCCc----------hhhhhccCCcceeeecCCCCcc-----c
Q 020667 90 FNLENFTSFCTSNL--GILEF---------PSLKELWISGCP----------KFMERYNRTTNILTERGCDHLV-----D 143 (323)
Q Consensus 90 ~~~~~l~~~~~~~~--~~~~l---------~~L~~L~l~~cp----------~~~~~l~~L~~L~~i~~~~~l~-----~ 143 (323)
++|. ++....... ....+ ++|++|++++|. ..+..+++|+.| .+.+|.... -
T Consensus 130 ~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L-~L~~n~l~~~g~~~l 207 (386)
T 2ca6_A 130 HNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV-KMVQNGIRPEGIEHL 207 (386)
T ss_dssp CSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE-ECCSSCCCHHHHHHH
T ss_pred cCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEE-ECcCCCCCHhHHHHH
Confidence 9985 332211100 01123 899999999983 123346677777 566664331 2
Q ss_pred cCCCCCCCCCCCEEEeecCcCc----ceecchhHHhccccccEEEEccCcccceeeeccCccccccc--ccccccCeeec
Q 020667 144 LVPSSTSFQNLTNLVVSCCKGL----KIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEV--ITFRELKELKL 217 (323)
Q Consensus 144 l~~~~~~l~~L~~L~l~~c~~l----~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~--~~~~~L~~L~l 217 (323)
++..+..+++|++|++++|..- ..+ +..+..+++|++|++++|. +...... .....+ +.+++|+.|++
T Consensus 208 ~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l--~~~l~~~~~L~~L~L~~n~-i~~~~~~---~l~~~l~~~~~~~L~~L~L 281 (386)
T 2ca6_A 208 LLEGLAYCQELKVLDLQDNTFTHLGSSAL--AIALKSWPNLRELGLNDCL-LSARGAA---AVVDAFSKLENIGLQTLRL 281 (386)
T ss_dssp HHTTGGGCTTCCEEECCSSCCHHHHHHHH--HHHGGGCTTCCEEECTTCC-CCHHHHH---HHHHHHHTCSSCCCCEEEC
T ss_pred HHHHhhcCCCccEEECcCCCCCcHHHHHH--HHHHccCCCcCEEECCCCC-CchhhHH---HHHHHHhhccCCCeEEEEC
Confidence 2336778999999999998631 333 4567889999999999987 3332100 000112 23899999999
Q ss_pred ccccccce-----ecCCCccccCCcccEEeecCCCCC
Q 020667 218 LNLESLTS-----FCSGNCAFKFPSLERLVLDDCPSM 249 (323)
Q Consensus 218 ~~c~~L~~-----l~~~~~~~~l~~L~~L~l~~c~~l 249 (323)
++| .++. ++... ..++++|++|++++|+.-
T Consensus 282 ~~n-~i~~~g~~~l~~~l-~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 282 QYN-EIELDAVRTLKTVI-DEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp CSS-CCBHHHHHHHHHHH-HHHCTTCCEEECTTSBSC
T ss_pred cCC-cCCHHHHHHHHHHH-HhcCCCceEEEccCCcCC
Confidence 997 5665 44321 245899999999997644
No 99
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.32 E-value=9.8e-14 Score=133.14 Aligned_cols=152 Identities=14% Similarity=0.203 Sum_probs=76.8
Q ss_pred ccccCCcccEEeeeccccccee--cc-----------chhHhcCCCccEEEEecCCCCceEEeeccccccCCCcc-ccCC
Q 020667 18 MSCGIQNLMHLTLRSCMNLRYL--FS-----------SSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNV-MFPQ 83 (323)
Q Consensus 18 ~~~~l~~L~~L~L~~c~~l~~~--~p-----------~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~-~l~~ 83 (323)
+. .+++|++|++++|..+.+. .| ..+...+++|++|++++|. +.. . ....+. .+++
T Consensus 62 ~~-~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~-----~---~~~~l~~~~~~ 131 (594)
T 2p1m_B 62 IR-RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTD-----D---CLELIAKSFKN 131 (594)
T ss_dssp HH-HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCH-----H---HHHHHHHHCTT
T ss_pred Hh-hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcH-----H---HHHHHHHhCCC
Confidence 44 8999999999998766532 11 1224578999999999763 210 0 000011 3566
Q ss_pred cCEEeccccccccc--ccccCccccCCCCccEEEEcCCc------hhhh----hccCCcceeeecCCC-Cc--cccCCCC
Q 020667 84 LQYLKMFNLENFTS--FCTSNLGILEFPSLKELWISGCP------KFME----RYNRTTNILTERGCD-HL--VDLVPSS 148 (323)
Q Consensus 84 L~~L~l~~~~~l~~--~~~~~~~~~~l~~L~~L~l~~cp------~~~~----~l~~L~~L~~i~~~~-~l--~~l~~~~ 148 (323)
|++|++.+|..++. ++.. ...+++|++|++++|. ..+. .+++|+.| ++.+|. .+ ..+..-.
T Consensus 132 L~~L~L~~~~~~~~~~l~~~---~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L-~l~~~~~~~~~~~l~~l~ 207 (594)
T 2p1m_B 132 FKVLVLSSCEGFSTDGLAAI---AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSL-NISCLASEVSFSALERLV 207 (594)
T ss_dssp CCEEEEESCEEEEHHHHHHH---HHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEE-ECTTCCSCCCHHHHHHHH
T ss_pred CcEEeCCCcCCCCHHHHHHH---HHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEE-EecccCCcCCHHHHHHHH
Confidence 66666666644433 2211 1245666666666653 1111 22344444 344443 01 0111111
Q ss_pred CCCCCCCEEEeecCcCcceecchhHHhccccccEEEE
Q 020667 149 TSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEI 185 (323)
Q Consensus 149 ~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l 185 (323)
..+++|++|++++|..++.+ +..+..+++|++|++
T Consensus 208 ~~~~~L~~L~L~~~~~~~~l--~~~~~~~~~L~~L~l 242 (594)
T 2p1m_B 208 TRCPNLKSLKLNRAVPLEKL--ATLLQRAPQLEELGT 242 (594)
T ss_dssp HHCTTCCEEECCTTSCHHHH--HHHHHHCTTCSEEEC
T ss_pred HhCCCCcEEecCCCCcHHHH--HHHHhcCCcceEccc
Confidence 23456666666665444443 344455555555553
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.32 E-value=6.3e-12 Score=110.95 Aligned_cols=200 Identities=16% Similarity=0.177 Sum_probs=136.5
Q ss_pred cCCcccEEeeecccccceeccchhH-hcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIV-SSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFC 99 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~-~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 99 (323)
.+++|++|++++ +.+++..|..++ ..+++|++|+++++..-. ..+. .. ...+..+++|++|+++++. +..++
T Consensus 89 ~~~~L~~L~l~~-n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--~~~~-~~--~~~~~~~~~L~~L~Ls~n~-l~~~~ 161 (310)
T 4glp_A 89 AYSRLKELTLED-LKITGTMPPLPLEATGLALSSLRLRNVSWAT--GRSW-LA--ELQQWLKPGLKVLSIAQAH-SPAFS 161 (310)
T ss_dssp HHSCCCEEEEES-CCCBSCCCCCSSSCCCBCCSSCEEESCCCSS--TTSS-HH--HHHTTBCSCCCEEEEECCS-SCCCC
T ss_pred ccCceeEEEeeC-CEeccchhhhhhhccCCCCCEEEeecccccc--hhhh-hH--HHHhhhccCCCEEEeeCCC-cchhh
Confidence 467899999999 567777676533 789999999999875432 0000 00 0111268899999999884 55555
Q ss_pred ccCccccCCCCccEEEEcCCchh----------hhhccCCcceeeecCCCCccccCCC----CCCCCCCCEEEeecCcCc
Q 020667 100 TSNLGILEFPSLKELWISGCPKF----------MERYNRTTNILTERGCDHLVDLVPS----STSFQNLTNLVVSCCKGL 165 (323)
Q Consensus 100 ~~~~~~~~l~~L~~L~l~~cp~~----------~~~l~~L~~L~~i~~~~~l~~l~~~----~~~l~~L~~L~l~~c~~l 165 (323)
... +..+++|++|++++|.-. ...+++|+.| .+.+|. ++.++.. +..+++|++|++++|. +
T Consensus 162 ~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L-~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l 236 (310)
T 4glp_A 162 CEQ--VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNL-ALRNTG-METPTGVCAALAAAGVQPHSLDLSHNS-L 236 (310)
T ss_dssp TTS--CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSC-BCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSC-C
T ss_pred HHH--hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEE-ECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCC-C
Confidence 433 357899999999999521 1345566666 466653 3433321 3567999999999986 4
Q ss_pred ceecchhHHhcc---ccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEe
Q 020667 166 KIVLTFSIAKTL---VRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLV 242 (323)
Q Consensus 166 ~~l~~~~~l~~l---~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~ 242 (323)
+... |..+..+ ++|++|++++|. ++.+| .. .+++|++|+++++ +++.++. ...+++|++|+
T Consensus 237 ~~~~-p~~~~~~~~~~~L~~L~Ls~N~-l~~lp--------~~--~~~~L~~L~Ls~N-~l~~~~~---~~~l~~L~~L~ 300 (310)
T 4glp_A 237 RATV-NPSAPRCMWSSALNSLNLSFAG-LEQVP--------KG--LPAKLRVLDLSSN-RLNRAPQ---PDELPEVDNLT 300 (310)
T ss_dssp CCCC-CSCCSSCCCCTTCCCEECCSSC-CCSCC--------SC--CCSCCSCEECCSC-CCCSCCC---TTSCCCCSCEE
T ss_pred Cccc-hhhHHhccCcCcCCEEECCCCC-CCchh--------hh--hcCCCCEEECCCC-cCCCCch---hhhCCCccEEE
Confidence 4431 2223444 799999999876 56776 22 2489999999996 7887754 35789999999
Q ss_pred ecCCCC
Q 020667 243 LDDCPS 248 (323)
Q Consensus 243 l~~c~~ 248 (323)
+++++.
T Consensus 301 L~~N~l 306 (310)
T 4glp_A 301 LDGNPF 306 (310)
T ss_dssp CSSTTT
T ss_pred CcCCCC
Confidence 988753
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.30 E-value=2e-11 Score=104.34 Aligned_cols=154 Identities=15% Similarity=0.207 Sum_probs=92.2
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccC
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSN 102 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 102 (323)
++|++|++++ ++++++.+.. ++.+++|++|+++++. +.. +. +..+..+++|++|+++++ .+..++...
T Consensus 35 ~~l~~L~L~~-n~l~~~~~~~-~~~l~~L~~L~L~~n~-l~~--~~------~~~~~~l~~L~~L~L~~n-~l~~~~~~~ 102 (251)
T 3m19_A 35 ADTEKLDLQS-TGLATLSDAT-FRGLTKLTWLNLDYNQ-LQT--LS------AGVFDDLTELGTLGLANN-QLASLPLGV 102 (251)
T ss_dssp TTCCEEECTT-SCCCCCCTTT-TTTCTTCCEEECTTSC-CCC--CC------TTTTTTCTTCCEEECTTS-CCCCCCTTT
T ss_pred CCCCEEEccC-CCcCccCHhH-hcCcccCCEEECCCCc-CCc--cC------HhHhccCCcCCEEECCCC-cccccChhH
Confidence 4566666666 4555543322 5566666666666643 221 11 111225666666666665 344444332
Q ss_pred ccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCC-CCCCCCCCEEEeecCcCcceecchhHHhcccccc
Q 020667 103 LGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPS-STSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLE 181 (323)
Q Consensus 103 ~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~ 181 (323)
+..+++|++|++++| .+..+++. +..+++|++|++++|. ++.++ +..+..+++|+
T Consensus 103 --~~~l~~L~~L~L~~N--------------------~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~ 158 (251)
T 3m19_A 103 --FDHLTQLDKLYLGGN--------------------QLKSLPSGVFDRLTKLKELRLNTNQ-LQSIP-AGAFDKLTNLQ 158 (251)
T ss_dssp --TTTCTTCCEEECCSS--------------------CCCCCCTTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCC
T ss_pred --hcccCCCCEEEcCCC--------------------cCCCcChhHhccCCcccEEECcCCc-CCccC-HHHcCcCcCCC
Confidence 135566666666554 23344443 4678899999999884 56553 33577889999
Q ss_pred EEEEccCcccceeeeccCcccccccccccccCeeecccc
Q 020667 182 YMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNL 220 (323)
Q Consensus 182 ~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c 220 (323)
.|++++|. +..++ ...+..+++|+.|++.++
T Consensus 159 ~L~L~~N~-l~~~~-------~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 159 TLSLSTNQ-LQSVP-------HGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp EEECCSSC-CSCCC-------TTTTTTCTTCCEEECCSC
T ss_pred EEECCCCc-CCccC-------HHHHhCCCCCCEEEeeCC
Confidence 99999875 55554 133457889999999885
No 102
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.26 E-value=4.9e-13 Score=124.30 Aligned_cols=128 Identities=19% Similarity=0.171 Sum_probs=68.4
Q ss_pred cCCcccEEeeeccccccee----ccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccC----CcCEEecccc
Q 020667 21 GIQNLMHLTLRSCMNLRYL----FSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFP----QLQYLKMFNL 92 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~----~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~----~L~~L~l~~~ 92 (323)
.+++|++|++++|. +++. ++.. +..+++|++|+++++. +..... .... ..++ +|++|++++|
T Consensus 26 ~~~~L~~L~L~~~~-l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~-l~~~~~-~~l~------~~l~~~~~~L~~L~L~~n 95 (461)
T 1z7x_W 26 LLQQCQVVRLDDCG-LTEARCKDISSA-LRVNPALAELNLRSNE-LGDVGV-HCVL------QGLQTPSCKIQKLSLQNC 95 (461)
T ss_dssp HHTTCSEEEEESSC-CCHHHHHHHHHH-HHTCTTCCEEECTTCC-CHHHHH-HHHH------HTTCSTTCCCCEEECTTS
T ss_pred hcCCccEEEccCCC-CCHHHHHHHHHH-HHhCCCcCEEeCCCCc-CChHHH-HHHH------HHHhhCCCceeEEEccCC
Confidence 78999999999864 5532 2322 5678999999998764 221000 0000 0233 5777777776
Q ss_pred cccc-----cccccCccccCCCCccEEEEcCCchh------hh-h----ccCCcceeeecCCCCcc----ccCCCCCCCC
Q 020667 93 ENFT-----SFCTSNLGILEFPSLKELWISGCPKF------ME-R----YNRTTNILTERGCDHLV----DLVPSSTSFQ 152 (323)
Q Consensus 93 ~~l~-----~~~~~~~~~~~l~~L~~L~l~~cp~~------~~-~----l~~L~~L~~i~~~~~l~----~l~~~~~~l~ 152 (323)
. ++ .++.. ...+++|++|++++|+-. +. . .++|++| .+.+|.... .++..+..++
T Consensus 96 ~-i~~~~~~~l~~~---l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L-~L~~n~l~~~~~~~l~~~l~~~~ 170 (461)
T 1z7x_W 96 C-LTGAGCGVLSST---LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKL-QLEYCSLSAASCEPLASVLRAKP 170 (461)
T ss_dssp C-CBGGGHHHHHHH---TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE-ECTTSCCBGGGHHHHHHHHHHCT
T ss_pred C-CCHHHHHHHHHH---HccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEE-ECCCCCCCHHHHHHHHHHHhhCC
Confidence 3 33 22322 236677777777777311 11 1 2245555 455553222 1222233455
Q ss_pred CCCEEEeecCc
Q 020667 153 NLTNLVVSCCK 163 (323)
Q Consensus 153 ~L~~L~l~~c~ 163 (323)
+|++|++++|.
T Consensus 171 ~L~~L~L~~n~ 181 (461)
T 1z7x_W 171 DFKELTVSNND 181 (461)
T ss_dssp TCCEEECCSSB
T ss_pred CCCEEECcCCC
Confidence 66666666654
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.23 E-value=4.6e-11 Score=99.06 Aligned_cols=139 Identities=14% Similarity=0.095 Sum_probs=76.1
Q ss_pred ccCCcCEEecccccccccccccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCC-CCCCCCCCCEEE
Q 020667 80 MFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVP-SSTSFQNLTNLV 158 (323)
Q Consensus 80 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~-~~~~l~~L~~L~ 158 (323)
.+++|++|+++++ .++.++... +..+++|++|++++|. +..+++ .+..+++|++|+
T Consensus 50 ~l~~L~~L~l~~n-~l~~~~~~~--~~~l~~L~~L~Ls~n~--------------------l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 50 ELTSLTQLYLGGN-KLQSLPNGV--FNKLTSLTYLNLSTNQ--------------------LQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TCTTCSEEECCSS-CCCCCCTTT--TTTCTTCCEEECCSSC--------------------CCCCCTTTTTTCTTCCEEE
T ss_pred ccccCcEEECCCC-ccCccChhh--cCCCCCcCEEECCCCc--------------------CCccCHhHhcCccCCCEEE
Confidence 5666666666665 344444432 1356666666666541 111222 234566677777
Q ss_pred eecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcc
Q 020667 159 VSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSL 238 (323)
Q Consensus 159 l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L 238 (323)
++++. ++.++ +..+..+++|++|++++|. +..++ ...+..+++|+.|++.+++ + ...+++|
T Consensus 107 L~~N~-l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~~-------~~~~~~l~~L~~L~l~~N~-~--------~~~~~~l 167 (208)
T 2o6s_A 107 LNTNQ-LQSLP-DGVFDKLTQLKDLRLYQNQ-LKSVP-------DGVFDRLTSLQYIWLHDNP-W--------DCTCPGI 167 (208)
T ss_dssp CCSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CSCCC-------TTTTTTCTTCCEEECCSCC-B--------CCCTTTT
T ss_pred cCCCc-CcccC-HhHhccCCcCCEEECCCCc-cceeC-------HHHhccCCCccEEEecCCC-e--------ecCCCCH
Confidence 76663 44432 2234566777777777653 44443 1223456677777777652 1 1235677
Q ss_pred cEEeecCCCCCcccCCCCCCCC
Q 020667 239 ERLVLDDCPSMKIFSEGNSSTP 260 (323)
Q Consensus 239 ~~L~l~~c~~l~~lp~~~~~~~ 260 (323)
++|+++.+...+.+|..+..++
T Consensus 168 ~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 168 RYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp HHHHHHHHHCTTTBBCTTSSBC
T ss_pred HHHHHHHHhCCceeeccCcccc
Confidence 7777776666667776555443
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.21 E-value=2e-11 Score=105.26 Aligned_cols=167 Identities=17% Similarity=0.181 Sum_probs=103.4
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCT 100 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 100 (323)
.+.+++.+++.+ +.++++ +. +..+++|++|+++++. +..+ + .+..+++|++|+++++ .+..++.
T Consensus 17 ~l~~l~~l~l~~-~~i~~~-~~--~~~l~~L~~L~l~~n~-i~~l--~--------~l~~l~~L~~L~L~~N-~i~~~~~ 80 (263)
T 1xeu_A 17 GLANAVKQNLGK-QSVTDL-VS--QKELSGVQNFNGDNSN-IQSL--A--------GMQFFTNLKELHLSHN-QISDLSP 80 (263)
T ss_dssp HHHHHHHHHHTC-SCTTSE-EC--HHHHTTCSEEECTTSC-CCCC--T--------TGGGCTTCCEEECCSS-CCCCCGG
T ss_pred HHHHHHHHHhcC-CCcccc-cc--hhhcCcCcEEECcCCC-cccc--h--------HHhhCCCCCEEECCCC-ccCCChh
Confidence 466777777776 566665 43 5678888888888763 3311 1 2336778888888776 4555554
Q ss_pred cCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccc
Q 020667 101 SNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRL 180 (323)
Q Consensus 101 ~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L 180 (323)
. ..+++|++|++++|. + ..++. +.. ++|++|++++|. ++.+ + .+..+++|
T Consensus 81 -l---~~l~~L~~L~L~~N~--------l------------~~l~~-~~~-~~L~~L~L~~N~-l~~~--~-~l~~l~~L 130 (263)
T 1xeu_A 81 -L---KDLTKLEELSVNRNR--------L------------KNLNG-IPS-ACLSRLFLDNNE-LRDT--D-SLIHLKNL 130 (263)
T ss_dssp -G---TTCSSCCEEECCSSC--------C------------SCCTT-CCC-SSCCEEECCSSC-CSBS--G-GGTTCTTC
T ss_pred -h---ccCCCCCEEECCCCc--------c------------CCcCc-ccc-CcccEEEccCCc-cCCC--h-hhcCcccc
Confidence 2 367888888887762 1 11111 222 677777777763 4444 2 36677777
Q ss_pred cEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCC
Q 020667 181 EYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCP 247 (323)
Q Consensus 181 ~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~ 247 (323)
+.|++++|. ++.++ .+..+++|+.|+++++ .++.+ .....+++|++|++++++
T Consensus 131 ~~L~Ls~N~-i~~~~---------~l~~l~~L~~L~L~~N-~i~~~---~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 131 EILSIRNNK-LKSIV---------MLGFLSKLEVLDLHGN-EITNT---GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CEEECTTSC-CCBCG---------GGGGCTTCCEEECTTS-CCCBC---TTSTTCCCCCEEEEEEEE
T ss_pred cEEECCCCc-CCCCh---------HHccCCCCCEEECCCC-cCcch---HHhccCCCCCEEeCCCCc
Confidence 777777764 44443 2346777777777775 55555 123567777777777654
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.20 E-value=1.1e-10 Score=96.75 Aligned_cols=164 Identities=20% Similarity=0.218 Sum_probs=118.6
Q ss_pred ccCCcCEEecccccccccccccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCC-CCCCCCCCEEE
Q 020667 80 MFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPS-STSFQNLTNLV 158 (323)
Q Consensus 80 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~-~~~l~~L~~L~ 158 (323)
..++|++|+++++ .+..++... +..+++|++|++++|. +..+++. +..+++|++|+
T Consensus 26 ~~~~l~~L~l~~n-~l~~~~~~~--~~~l~~L~~L~l~~n~--------------------l~~~~~~~~~~l~~L~~L~ 82 (208)
T 2o6s_A 26 IPAQTTYLDLETN-SLKSLPNGV--FDELTSLTQLYLGGNK--------------------LQSLPNGVFNKLTSLTYLN 82 (208)
T ss_dssp CCTTCSEEECCSS-CCCCCCTTT--TTTCTTCSEEECCSSC--------------------CCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCcEEEcCCC-ccCcCChhh--hcccccCcEEECCCCc--------------------cCccChhhcCCCCCcCEEE
Confidence 4568999999987 566666543 2478899999988751 2223332 46789999999
Q ss_pred eecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcc
Q 020667 159 VSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSL 238 (323)
Q Consensus 159 l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L 238 (323)
+++|. ++.++ +..+..+++|++|+++++. +..++ ...+..+++|+.|+++++ .++.++... +..+++|
T Consensus 83 Ls~n~-l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~-------~~~~~~l~~L~~L~l~~N-~l~~~~~~~-~~~l~~L 150 (208)
T 2o6s_A 83 LSTNQ-LQSLP-NGVFDKLTQLKELALNTNQ-LQSLP-------DGVFDKLTQLKDLRLYQN-QLKSVPDGV-FDRLTSL 150 (208)
T ss_dssp CCSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CCCCC-------TTTTTTCTTCCEEECCSS-CCSCCCTTT-TTTCTTC
T ss_pred CCCCc-CCccC-HhHhcCccCCCEEEcCCCc-CcccC-------HhHhccCCcCCEEECCCC-ccceeCHHH-hccCCCc
Confidence 99885 55542 3446789999999999875 55555 123467899999999996 677776643 4678999
Q ss_pred cEEeecCCCCCcccCCCCCCCCCcceeEccCccccccccchhhhceeeec
Q 020667 239 ERLVLDDCPSMKIFSEGNSSTPKLHEVQWPGEARWAWKDDLNTTIQKVIF 288 (323)
Q Consensus 239 ~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~~~~~~~~~~l~~~l~~l~~ 288 (323)
++|++++++.. ..+++|+.|++ ..+.+.|.+|..+..+..
T Consensus 151 ~~L~l~~N~~~-------~~~~~l~~L~~---~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 151 QYIWLHDNPWD-------CTCPGIRYLSE---WINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CEEECCSCCBC-------CCTTTTHHHHH---HHHHCTTTBBCTTSSBCT
T ss_pred cEEEecCCCee-------cCCCCHHHHHH---HHHhCCceeeccCccccC
Confidence 99999998543 25678999988 667788888887765544
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.14 E-value=2.5e-10 Score=96.15 Aligned_cols=147 Identities=14% Similarity=0.098 Sum_probs=75.9
Q ss_pred ccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccCcc
Q 020667 25 LMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSNLG 104 (323)
Q Consensus 25 L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 104 (323)
-+.++.++ ++++.+ |.. -.++|++|+++++..-. . .+..+..+++|++|+++++ .+..++...
T Consensus 21 ~~~v~c~~-~~l~~i-p~~---~~~~L~~L~Ls~n~i~~--~-------~~~~~~~l~~L~~L~L~~N-~l~~i~~~~-- 83 (229)
T 3e6j_A 21 GTTVDCRS-KRHASV-PAG---IPTNAQILYLHDNQITK--L-------EPGVFDSLINLKELYLGSN-QLGALPVGV-- 83 (229)
T ss_dssp TTEEECTT-SCCSSC-CSC---CCTTCSEEECCSSCCCC--C-------CTTTTTTCTTCCEEECCSS-CCCCCCTTT--
T ss_pred CCEeEccC-CCcCcc-CCC---CCCCCCEEEcCCCccCc--c-------CHHHhhCccCCcEEECCCC-CCCCcChhh--
Confidence 45566655 455553 543 23667777776653221 1 1112235667777777665 345555432
Q ss_pred ccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCC-CCCCCCCCEEEeecCcCcceecchhHHhccccccEE
Q 020667 105 ILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPS-STSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYM 183 (323)
Q Consensus 105 ~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L 183 (323)
+..+++|++|++++|. +..+++. +..+++|++|+++++. ++.+ +..+..+++|+.|
T Consensus 84 ~~~l~~L~~L~Ls~N~--------------------l~~l~~~~~~~l~~L~~L~Ls~N~-l~~l--p~~~~~l~~L~~L 140 (229)
T 3e6j_A 84 FDSLTQLTVLDLGTNQ--------------------LTVLPSAVFDRLVHLKELFMCCNK-LTEL--PRGIERLTHLTHL 140 (229)
T ss_dssp TTTCTTCCEEECCSSC--------------------CCCCCTTTTTTCTTCCEEECCSSC-CCSC--CTTGGGCTTCSEE
T ss_pred cccCCCcCEEECCCCc--------------------CCccChhHhCcchhhCeEeccCCc-cccc--CcccccCCCCCEE
Confidence 1356677777766641 1122221 3455666666666653 4444 3345566666666
Q ss_pred EEccCcccceeeeccCcccccccccccccCeeeccc
Q 020667 184 EIESCDRITEIVLVDDVAAKDEVITFRELKELKLLN 219 (323)
Q Consensus 184 ~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~ 219 (323)
++++|. +..++ ...+..+++|+.|++.+
T Consensus 141 ~L~~N~-l~~~~-------~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 141 ALDQNQ-LKSIP-------HGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp ECCSSC-CCCCC-------TTTTTTCTTCCEEECTT
T ss_pred ECCCCc-CCccC-------HHHHhCCCCCCEEEeeC
Confidence 666653 44443 12234556666666665
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.13 E-value=2.5e-10 Score=98.26 Aligned_cols=152 Identities=14% Similarity=0.211 Sum_probs=111.7
Q ss_pred cccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccc
Q 020667 17 VMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFT 96 (323)
Q Consensus 17 ~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 96 (323)
.+. .+++|++|++++ ++++.+ |. +..+++|++|+++++. +.. ++. +..+++|++|+++++ .++
T Consensus 36 ~~~-~l~~L~~L~l~~-n~i~~l-~~--l~~l~~L~~L~L~~N~-i~~--~~~--------l~~l~~L~~L~L~~N-~l~ 98 (263)
T 1xeu_A 36 SQK-ELSGVQNFNGDN-SNIQSL-AG--MQFFTNLKELHLSHNQ-ISD--LSP--------LKDLTKLEELSVNRN-RLK 98 (263)
T ss_dssp CHH-HHTTCSEEECTT-SCCCCC-TT--GGGCTTCCEEECCSSC-CCC--CGG--------GTTCSSCCEEECCSS-CCS
T ss_pred chh-hcCcCcEEECcC-CCcccc-hH--HhhCCCCCEEECCCCc-cCC--Chh--------hccCCCCCEEECCCC-ccC
Confidence 356 899999999999 578875 64 7899999999999874 441 111 448999999999998 566
Q ss_pred cccccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhc
Q 020667 97 SFCTSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKT 176 (323)
Q Consensus 97 ~~~~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~ 176 (323)
.++.. .. ++|+.|++++|. +. .+ +.+..+++|+.|++++|. ++.+ + .+..
T Consensus 99 ~l~~~----~~-~~L~~L~L~~N~--------l~------------~~-~~l~~l~~L~~L~Ls~N~-i~~~--~-~l~~ 148 (263)
T 1xeu_A 99 NLNGI----PS-ACLSRLFLDNNE--------LR------------DT-DSLIHLKNLEILSIRNNK-LKSI--V-MLGF 148 (263)
T ss_dssp CCTTC----CC-SSCCEEECCSSC--------CS------------BS-GGGTTCTTCCEEECTTSC-CCBC--G-GGGG
T ss_pred CcCcc----cc-CcccEEEccCCc--------cC------------CC-hhhcCcccccEEECCCCc-CCCC--h-HHcc
Confidence 66543 13 899999998872 11 12 236678899999999885 6665 2 4788
Q ss_pred cccccEEEEccCcccceeeeccCcccccccccccccCeeeccccccccee
Q 020667 177 LVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSF 226 (323)
Q Consensus 177 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l 226 (323)
+++|+.|++++|. +..+. .+..+++|+.|+++++ .+...
T Consensus 149 l~~L~~L~L~~N~-i~~~~---------~l~~l~~L~~L~l~~N-~~~~~ 187 (263)
T 1xeu_A 149 LSKLEVLDLHGNE-ITNTG---------GLTRLKKVNWIDLTGQ-KCVNE 187 (263)
T ss_dssp CTTCCEEECTTSC-CCBCT---------TSTTCCCCCEEEEEEE-EEECC
T ss_pred CCCCCEEECCCCc-CcchH---------HhccCCCCCEEeCCCC-cccCC
Confidence 9999999999875 44432 2357889999999985 44444
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.11 E-value=5.7e-10 Score=93.38 Aligned_cols=148 Identities=14% Similarity=0.139 Sum_probs=71.1
Q ss_pred cEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccCccc
Q 020667 26 MHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSNLGI 105 (323)
Q Consensus 26 ~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 105 (323)
+++++++ +.++.+ |.. -.+.++.|+++++. +..+.... .+..+++|++|+++++ .+..++... +
T Consensus 14 ~~l~~s~-n~l~~i-P~~---~~~~~~~L~L~~N~-l~~~~~~~-------~~~~l~~L~~L~L~~N-~i~~i~~~~--~ 77 (220)
T 2v70_A 14 TTVDCSN-QKLNKI-PEH---IPQYTAELRLNNNE-FTVLEATG-------IFKKLPQLRKINFSNN-KITDIEEGA--F 77 (220)
T ss_dssp TEEECCS-SCCSSC-CSC---CCTTCSEEECCSSC-CCEECCCC-------CGGGCTTCCEEECCSS-CCCEECTTT--T
T ss_pred CEeEeCC-CCcccC-ccC---CCCCCCEEEcCCCc-CCccCchh-------hhccCCCCCEEECCCC-cCCEECHHH--h
Confidence 4566665 455553 443 12345666666543 33111011 1125666666666665 344444422 2
Q ss_pred cCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCC-CCCCCCCCCEEEeecCcCcceecchhHHhccccccEEE
Q 020667 106 LEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVP-SSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYME 184 (323)
Q Consensus 106 ~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~ 184 (323)
..+++|++|++++|. +..+++ .+..+++|++|++++|. ++.+. +..+..+++|+.|+
T Consensus 78 ~~l~~L~~L~Ls~N~--------------------l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~ 135 (220)
T 2v70_A 78 EGASGVNEILLTSNR--------------------LENVQHKMFKGLESLKTLMLRSNR-ITCVG-NDSFIGLSSVRLLS 135 (220)
T ss_dssp TTCTTCCEEECCSSC--------------------CCCCCGGGGTTCSSCCEEECTTSC-CCCBC-TTSSTTCTTCSEEE
T ss_pred CCCCCCCEEECCCCc--------------------cCccCHhHhcCCcCCCEEECCCCc-CCeEC-HhHcCCCccCCEEE
Confidence 356666666666541 111111 23455566666666553 33321 23345556666666
Q ss_pred EccCcccceeeeccCcccccccccccccCeeeccc
Q 020667 185 IESCDRITEIVLVDDVAAKDEVITFRELKELKLLN 219 (323)
Q Consensus 185 l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~ 219 (323)
+++|. +..++ ...+..+++|+.|++.+
T Consensus 136 L~~N~-l~~~~-------~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 136 LYDNQ-ITTVA-------PGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CTTSC-CCCBC-------TTTTTTCTTCCEEECCS
T ss_pred CCCCc-CCEEC-------HHHhcCCCCCCEEEecC
Confidence 66543 33332 12334556666666665
No 109
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.09 E-value=1.4e-12 Score=124.54 Aligned_cols=107 Identities=19% Similarity=0.138 Sum_probs=61.9
Q ss_pred ccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccc
Q 020667 143 DLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLES 222 (323)
Q Consensus 143 ~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 222 (323)
.+|. +..+++|+.|++++|. ++.+ |..++++++|+.|++++|. +..+| .++.+++|+.|+++++ +
T Consensus 455 ~lp~-~~~l~~L~~L~Ls~N~-l~~l--p~~~~~l~~L~~L~Ls~N~-l~~lp---------~l~~l~~L~~L~Ls~N-~ 519 (567)
T 1dce_A 455 VLCH-LEQLLLVTHLDLSHNR-LRAL--PPALAALRCLEVLQASDNA-LENVD---------GVANLPRLQELLLCNN-R 519 (567)
T ss_dssp SCCC-GGGGTTCCEEECCSSC-CCCC--CGGGGGCTTCCEEECCSSC-CCCCG---------GGTTCSSCCEEECCSS-C
T ss_pred CCcC-ccccccCcEeecCccc-cccc--chhhhcCCCCCEEECCCCC-CCCCc---------ccCCCCCCcEEECCCC-C
Confidence 3443 6666777777777664 4444 4456677777777777654 44443 2356677777777774 5
Q ss_pred cceec-CCCccccCCcccEEeecCCCCCcccCCCCC----CCCCcceeE
Q 020667 223 LTSFC-SGNCAFKFPSLERLVLDDCPSMKIFSEGNS----STPKLHEVQ 266 (323)
Q Consensus 223 L~~l~-~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~----~~~~L~~L~ 266 (323)
++.+. +. .+..+++|++|++++++ +..+|.... .+|+|+.|+
T Consensus 520 l~~~~~p~-~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 520 LQQSAAIQ-PLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCSSSTTG-GGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCcH-HHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence 66653 11 23567777777776643 444443321 256666654
No 110
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.08 E-value=2.1e-10 Score=91.71 Aligned_cols=131 Identities=20% Similarity=0.275 Sum_probs=78.4
Q ss_pred cCCcccEEeeecccccc-eeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccccc-c
Q 020667 21 GIQNLMHLTLRSCMNLR-YLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTS-F 98 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~-~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-~ 98 (323)
..++|++|++++| .++ +.+|.. +..+++|++|++++|. ++.+ . .+..+++|++|+++++. +.. +
T Consensus 22 ~~~~L~~L~l~~n-~l~~~~i~~~-~~~l~~L~~L~l~~n~-l~~~---~-------~~~~l~~L~~L~Ls~N~-l~~~~ 87 (168)
T 2ell_A 22 TPAAVRELVLDNC-KSNDGKIEGL-TAEFVNLEFLSLINVG-LISV---S-------NLPKLPKLKKLELSENR-IFGGL 87 (168)
T ss_dssp CTTSCSEEECCSC-BCBTTBCSSC-CGGGGGCCEEEEESSC-CCCC---S-------SCCCCSSCCEEEEESCC-CCSCC
T ss_pred CcccCCEEECCCC-CCChhhHHHH-HHhCCCCCEEeCcCCC-CCCh---h-------hhccCCCCCEEECcCCc-CchHH
Confidence 4678888888884 465 234654 5778888888888875 4422 1 22367788888888774 443 3
Q ss_pred cccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccC--CCCCCCCCCCEEEeecCcCcceecc--hhHH
Q 020667 99 CTSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLV--PSSTSFQNLTNLVVSCCKGLKIVLT--FSIA 174 (323)
Q Consensus 99 ~~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~--~~~~~l~~L~~L~l~~c~~l~~l~~--~~~l 174 (323)
+.. ...+++|++|++++|. +..++ ..+..+++|++|++++|. ++.++. ...+
T Consensus 88 ~~~---~~~l~~L~~L~Ls~N~--------------------l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~ 143 (168)
T 2ell_A 88 DML---AEKLPNLTHLNLSGNK--------------------LKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVF 143 (168)
T ss_dssp CHH---HHHCTTCCEEECBSSS--------------------CCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHH
T ss_pred HHH---HhhCCCCCEEeccCCc--------------------cCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHH
Confidence 332 1247777777777652 11111 234556677777777764 333321 0245
Q ss_pred hccccccEEEEccCc
Q 020667 175 KTLVRLEYMEIESCD 189 (323)
Q Consensus 175 ~~l~~L~~L~l~~c~ 189 (323)
..+++|++|++++|.
T Consensus 144 ~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 144 KLLPQLTYLDGYDRE 158 (168)
T ss_dssp TTCSSCCEETTEETT
T ss_pred HhCccCcEecCCCCC
Confidence 666777777766664
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.08 E-value=9.5e-10 Score=92.03 Aligned_cols=61 Identities=15% Similarity=0.268 Sum_probs=30.3
Q ss_pred CCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeeccc
Q 020667 149 TSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLN 219 (323)
Q Consensus 149 ~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~ 219 (323)
..+++|++|++++|. ++.+. +..+..+++|+.|++++|. +..++ ...+..+++|+.|++.+
T Consensus 101 ~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~-------~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 101 EGLFSLQLLLLNANK-INCLR-VDAFQDLHNLNLLSLYDNK-LQTIA-------KGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp TTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CSCCC-------TTTTTTCTTCCEEECCS
T ss_pred cCCCCCCEEECCCCC-CCEeC-HHHcCCCCCCCEEECCCCc-CCEEC-------HHHHhCCCCCCEEEeCC
Confidence 345556666665553 33321 2334555666666666543 33333 11233455666666655
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.08 E-value=2.3e-09 Score=89.71 Aligned_cols=107 Identities=15% Similarity=0.126 Sum_probs=57.7
Q ss_pred CCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceec
Q 020667 148 STSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFC 227 (323)
Q Consensus 148 ~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~ 227 (323)
+..+++|++|+++++. ++.+. +..+.++++|++|+++++. +..++ ...+..+++|+.|+++++ .++.++
T Consensus 52 ~~~l~~L~~L~Ls~N~-i~~~~-~~~~~~l~~L~~L~Ls~N~-l~~l~-------~~~f~~l~~L~~L~L~~N-~l~~~~ 120 (220)
T 2v9t_B 52 FSPYKKLRRIDLSNNQ-ISELA-PDAFQGLRSLNSLVLYGNK-ITELP-------KSLFEGLFSLQLLLLNAN-KINCLR 120 (220)
T ss_dssp STTCTTCCEEECCSSC-CCEEC-TTTTTTCSSCCEEECCSSC-CCCCC-------TTTTTTCTTCCEEECCSS-CCCCCC
T ss_pred hhCCCCCCEEECCCCc-CCCcC-HHHhhCCcCCCEEECCCCc-CCccC-------HhHccCCCCCCEEECCCC-CCCEeC
Confidence 4455566666666553 33331 3345556666666666553 44444 112245566666666664 555554
Q ss_pred CCCccccCCcccEEeecCCCCCcccCC-CCCCCCCcceeEc
Q 020667 228 SGNCAFKFPSLERLVLDDCPSMKIFSE-GNSSTPKLHEVQW 267 (323)
Q Consensus 228 ~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~~~L~~L~l 267 (323)
... +..+++|++|+++++ .++.++. .+..+++|+.|++
T Consensus 121 ~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 121 VDA-FQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp TTT-TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEEC
T ss_pred HHH-cCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEe
Confidence 432 345667777777664 3444443 3445667777777
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.08 E-value=2.3e-09 Score=89.64 Aligned_cols=107 Identities=13% Similarity=0.096 Sum_probs=54.3
Q ss_pred CCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecC
Q 020667 149 TSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCS 228 (323)
Q Consensus 149 ~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~ 228 (323)
..+++|++|+++++. ++.++ +..+.++++|++|+++++. +..++ ...+..+++|++|+++++ +++.++.
T Consensus 54 ~~l~~L~~L~L~~N~-i~~i~-~~~~~~l~~L~~L~Ls~N~-l~~~~-------~~~~~~l~~L~~L~Ls~N-~l~~~~~ 122 (220)
T 2v70_A 54 KKLPQLRKINFSNNK-ITDIE-EGAFEGASGVNEILLTSNR-LENVQ-------HKMFKGLESLKTLMLRSN-RITCVGN 122 (220)
T ss_dssp GGCTTCCEEECCSSC-CCEEC-TTTTTTCTTCCEEECCSSC-CCCCC-------GGGGTTCSSCCEEECTTS-CCCCBCT
T ss_pred ccCCCCCEEECCCCc-CCEEC-HHHhCCCCCCCEEECCCCc-cCccC-------HhHhcCCcCCCEEECCCC-cCCeECH
Confidence 345555555555553 33332 2234555566666665543 33333 122345566666666663 4555533
Q ss_pred CCccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEc
Q 020667 229 GNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQW 267 (323)
Q Consensus 229 ~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l 267 (323)
.. +..+++|++|+++++..-+..|..+..+++|+.|++
T Consensus 123 ~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 123 DS-FIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160 (220)
T ss_dssp TS-STTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEEC
T ss_pred hH-cCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEe
Confidence 22 345566666666664322222555556666666666
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.07 E-value=6.9e-10 Score=105.65 Aligned_cols=172 Identities=13% Similarity=0.053 Sum_probs=119.4
Q ss_pred CCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccccccccc
Q 020667 22 IQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTS 101 (323)
Q Consensus 22 l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 101 (323)
+++|++|++++ ++++.+ | +.+++|++|+++++ .+.. ++. + .. +|++|+++++ .++.++.
T Consensus 79 ~~~L~~L~Ls~-N~l~~i-p----~~l~~L~~L~Ls~N-~l~~--ip~-l-------~~--~L~~L~Ls~N-~l~~lp~- 137 (571)
T 3cvr_A 79 PPQITVLEITQ-NALISL-P----ELPASLEYLDACDN-RLST--LPE-L-------PA--SLKHLDVDNN-QLTMLPE- 137 (571)
T ss_dssp CTTCSEEECCS-SCCSCC-C----CCCTTCCEEECCSS-CCSC--CCC-C-------CT--TCCEEECCSS-CCSCCCC-
T ss_pred cCCCCEEECcC-CCCccc-c----cccCCCCEEEccCC-CCCC--cch-h-------hc--CCCEEECCCC-cCCCCCC-
Confidence 47899999999 678864 6 35799999999987 3442 222 1 12 9999999987 5666654
Q ss_pred CccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhcccccc
Q 020667 102 NLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLE 181 (323)
Q Consensus 102 ~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~ 181 (323)
.+++|+.|++++|. +..+|. .+++|++|++++|. ++.++ . +. ++|+
T Consensus 138 -----~l~~L~~L~Ls~N~--------------------l~~lp~---~l~~L~~L~Ls~N~-L~~lp--~-l~--~~L~ 183 (571)
T 3cvr_A 138 -----LPALLEYINADNNQ--------------------LTMLPE---LPTSLEVLSVRNNQ-LTFLP--E-LP--ESLE 183 (571)
T ss_dssp -----CCTTCCEEECCSSC--------------------CSCCCC---CCTTCCEEECCSSC-CSCCC--C-CC--TTCC
T ss_pred -----cCccccEEeCCCCc--------------------cCcCCC---cCCCcCEEECCCCC-CCCcc--h-hh--CCCC
Confidence 47899999998862 222333 46799999999885 55553 3 33 8999
Q ss_pred EEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCC
Q 020667 182 YMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGN 256 (323)
Q Consensus 182 ~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~ 256 (323)
.|++++|. ++.+|. - ...-....+.|+.|+++++ .++.+|... ..+++|++|++++|+..+.+|..+
T Consensus 184 ~L~Ls~N~-L~~lp~-~---~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l--~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 184 ALDVSTNL-LESLPA-V---PVRNHHSEETEIFFRCREN-RITHIPENI--LSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp EEECCSSC-CSSCCC-C---C--------CCEEEECCSS-CCCCCCGGG--GGSCTTEEEECCSSSCCHHHHHHH
T ss_pred EEECcCCC-CCchhh-H---HHhhhcccccceEEecCCC-cceecCHHH--hcCCCCCEEEeeCCcCCCcCHHHH
Confidence 99999874 667762 0 0000011222399999996 788887644 569999999999987766666543
No 115
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.06 E-value=2.6e-11 Score=109.38 Aligned_cols=215 Identities=12% Similarity=0.045 Sum_probs=130.2
Q ss_pred ccccccCC-cccEEeeecccccceeccchhHhcC-----CCccEEEEecCCCCceEEeeccccccCCCcccc-CCcCEEe
Q 020667 16 TVMSCGIQ-NLMHLTLRSCMNLRYLFSSSIVSSF-----VRLQRIEIVECPVLKELIVMDNQEERKNNNVMF-PQLQYLK 88 (323)
Q Consensus 16 ~~~~~~l~-~L~~L~L~~c~~l~~~~p~~~~~~l-----~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l-~~L~~L~ 88 (323)
..+. .++ +|++|++++ +.+++..+.. +..+ ++|++|++++|. +.. ....... ..+..+ ++|++|+
T Consensus 44 ~~l~-~~~~~L~~L~Ls~-N~l~~~~~~~-l~~~l~~~~~~L~~L~Ls~n~-l~~-~~~~~l~---~~l~~~~~~L~~L~ 115 (362)
T 3goz_A 44 QAFA-NTPASVTSLNLSG-NSLGFKNSDE-LVQILAAIPANVTSLNLSGNF-LSY-KSSDELV---KTLAAIPFTITVLD 115 (362)
T ss_dssp HHHH-TCCTTCCEEECCS-SCGGGSCHHH-HHHHHHTSCTTCCEEECCSSC-GGG-SCHHHHH---HHHHTSCTTCCEEE
T ss_pred HHHH-hCCCceeEEECcC-CCCCHHHHHH-HHHHHhccCCCccEEECcCCc-CCh-HHHHHHH---HHHHhCCCCccEEE
Confidence 3455 788 999999999 5787754544 4443 999999999986 331 1111011 111234 7999999
Q ss_pred cccccccccccccCc--cccC-CCCccEEEEcCCch----------hhhhcc-CCcceeeecCCCCccccCC----CCCC
Q 020667 89 MFNLENFTSFCTSNL--GILE-FPSLKELWISGCPK----------FMERYN-RTTNILTERGCDHLVDLVP----SSTS 150 (323)
Q Consensus 89 l~~~~~l~~~~~~~~--~~~~-l~~L~~L~l~~cp~----------~~~~l~-~L~~L~~i~~~~~l~~l~~----~~~~ 150 (323)
+++|. ++..+.... .... .++|++|++++|.- .+..++ +|+.| .+.+|......+. .+..
T Consensus 116 Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L-~Ls~n~l~~~~~~~l~~~l~~ 193 (362)
T 3goz_A 116 LGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL-NLRGNNLASKNCAELAKFLAS 193 (362)
T ss_dssp CCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE-ECTTSCGGGSCHHHHHHHHHT
T ss_pred CcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEe-eecCCCCchhhHHHHHHHHHh
Confidence 99985 554433211 0112 46999999999931 122233 77777 5666643322221 1233
Q ss_pred C-CCCCEEEeecCcCcceecc---hhHHhc-cccccEEEEccCcccceeeeccCcccccccccccccCeeeccccc----
Q 020667 151 F-QNLTNLVVSCCKGLKIVLT---FSIAKT-LVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLE---- 221 (323)
Q Consensus 151 l-~~L~~L~l~~c~~l~~l~~---~~~l~~-l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~---- 221 (323)
+ ++|++|++++|. +++... +..+.. .++|++|++++|. ++..+... ....+..+++|+.|++++|.
T Consensus 194 ~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~---l~~~~~~l~~L~~L~L~~n~l~~i 268 (362)
T 3goz_A 194 IPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLEN---LKLLKDSLKHLQTVYLDYDIVKNM 268 (362)
T ss_dssp SCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHH---HHHTTTTTTTCSEEEEEHHHHTTC
T ss_pred CCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHH---HHHHHhcCCCccEEEeccCCcccc
Confidence 4 599999999986 554211 334444 3599999999985 44433100 00122467899999999974
Q ss_pred ---ccceecCCCccccCCcccEEeecCCC
Q 020667 222 ---SLTSFCSGNCAFKFPSLERLVLDDCP 247 (323)
Q Consensus 222 ---~L~~l~~~~~~~~l~~L~~L~l~~c~ 247 (323)
.+..+... ...+++|++|++++++
T Consensus 269 ~~~~~~~l~~~--~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 269 SKEQCKALGAA--FPNIQKIILVDKNGKE 295 (362)
T ss_dssp CHHHHHHHHTT--STTCCEEEEECTTSCB
T ss_pred CHHHHHHHHHH--hccCCceEEEecCCCc
Confidence 12223222 2467889999998865
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.04 E-value=3.8e-09 Score=88.86 Aligned_cols=146 Identities=17% Similarity=0.137 Sum_probs=90.8
Q ss_pred cCEEecccccccccccccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCc
Q 020667 84 LQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCK 163 (323)
Q Consensus 84 L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 163 (323)
-+.++.++. .++.+|.. ..++|++|++++|. +.. ..|..+..+++|++|++++|.
T Consensus 21 ~~~v~c~~~-~l~~ip~~-----~~~~L~~L~Ls~n~--------i~~-----------~~~~~~~~l~~L~~L~L~~N~ 75 (229)
T 3e6j_A 21 GTTVDCRSK-RHASVPAG-----IPTNAQILYLHDNQ--------ITK-----------LEPGVFDSLINLKELYLGSNQ 75 (229)
T ss_dssp TTEEECTTS-CCSSCCSC-----CCTTCSEEECCSSC--------CCC-----------CCTTTTTTCTTCCEEECCSSC
T ss_pred CCEeEccCC-CcCccCCC-----CCCCCCEEEcCCCc--------cCc-----------cCHHHhhCccCCcEEECCCCC
Confidence 344555443 45555543 34677777776651 111 112345567778888887775
Q ss_pred CcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEee
Q 020667 164 GLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVL 243 (323)
Q Consensus 164 ~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l 243 (323)
++.++ +..+..+++|+.|++++|. +..++ ...+..+++|+.|+++++ +++.++... ..+++|++|++
T Consensus 76 -l~~i~-~~~~~~l~~L~~L~Ls~N~-l~~l~-------~~~~~~l~~L~~L~Ls~N-~l~~lp~~~--~~l~~L~~L~L 142 (229)
T 3e6j_A 76 -LGALP-VGVFDSLTQLTVLDLGTNQ-LTVLP-------SAVFDRLVHLKELFMCCN-KLTELPRGI--ERLTHLTHLAL 142 (229)
T ss_dssp -CCCCC-TTTTTTCTTCCEEECCSSC-CCCCC-------TTTTTTCTTCCEEECCSS-CCCSCCTTG--GGCTTCSEEEC
T ss_pred -CCCcC-hhhcccCCCcCEEECCCCc-CCccC-------hhHhCcchhhCeEeccCC-cccccCccc--ccCCCCCEEEC
Confidence 45442 2345677788888887763 55554 122356778888888874 677776543 67788888888
Q ss_pred cCCCCCcccCCC-CCCCCCcceeEcc
Q 020667 244 DDCPSMKIFSEG-NSSTPKLHEVQWP 268 (323)
Q Consensus 244 ~~c~~l~~lp~~-~~~~~~L~~L~l~ 268 (323)
+++ .++.+|.. +..+++|+.|++.
T Consensus 143 ~~N-~l~~~~~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 143 DQN-QLKSIPHGAFDRLSSLTHAYLF 167 (229)
T ss_dssp CSS-CCCCCCTTTTTTCTTCCEEECT
T ss_pred CCC-cCCccCHHHHhCCCCCCEEEee
Confidence 774 56666643 5567888888883
No 117
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.02 E-value=2.8e-09 Score=94.74 Aligned_cols=15 Identities=13% Similarity=0.346 Sum_probs=12.2
Q ss_pred CCcccEEeeecccccc
Q 020667 22 IQNLMHLTLRSCMNLR 37 (323)
Q Consensus 22 l~~L~~L~L~~c~~l~ 37 (323)
+++|++|+|++ +.+.
T Consensus 48 l~~L~~LdLs~-n~i~ 62 (329)
T 3sb4_A 48 FPSLKVLDISN-AEIK 62 (329)
T ss_dssp CTTCCEEEEEE-EEEC
T ss_pred hccCeEEecCc-ceeE
Confidence 78899999998 5565
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.02 E-value=1.5e-09 Score=97.71 Aligned_cols=83 Identities=17% Similarity=0.203 Sum_probs=58.2
Q ss_pred CcccEEeeecccccceeccchhHh-cCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccccccccc
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVS-SFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTS 101 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~-~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 101 (323)
+++++|+|++ ++++++.+.. +. .+++|++|+++++. +. .++. ..+..+++|++|+++++ .+..++..
T Consensus 39 ~~l~~L~Ls~-N~l~~l~~~~-~~~~l~~L~~L~L~~N~-i~--~i~~------~~~~~l~~L~~L~Ls~N-~l~~~~~~ 106 (361)
T 2xot_A 39 SYTALLDLSH-NNLSRLRAEW-TPTRLTNLHSLLLSHNH-LN--FISS------EAFVPVPNLRYLDLSSN-HLHTLDEF 106 (361)
T ss_dssp TTCSEEECCS-SCCCEECTTS-SSSCCTTCCEEECCSSC-CC--EECT------TTTTTCTTCCEEECCSS-CCCEECTT
T ss_pred CCCCEEECCC-CCCCccChhh-hhhcccccCEEECCCCc-CC--ccCh------hhccCCCCCCEEECCCC-cCCcCCHH
Confidence 5688899988 6788864443 55 78899999998764 44 2221 12337888999999887 46666654
Q ss_pred CccccCCCCccEEEEcCC
Q 020667 102 NLGILEFPSLKELWISGC 119 (323)
Q Consensus 102 ~~~~~~l~~L~~L~l~~c 119 (323)
. +..+++|++|++++|
T Consensus 107 ~--~~~l~~L~~L~L~~N 122 (361)
T 2xot_A 107 L--FSDLQALEVLLLYNN 122 (361)
T ss_dssp T--TTTCTTCCEEECCSS
T ss_pred H--hCCCcCCCEEECCCC
Confidence 3 247888999988887
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.98 E-value=2.9e-10 Score=90.80 Aligned_cols=131 Identities=18% Similarity=0.170 Sum_probs=88.8
Q ss_pred CCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEc
Q 020667 107 EFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIE 186 (323)
Q Consensus 107 ~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~ 186 (323)
..++|++|++++|.- . . +.+|..+..+++|++|++++|. ++.+ ..+..+++|++|+++
T Consensus 22 ~~~~L~~L~l~~n~l--------~------~----~~i~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls 79 (168)
T 2ell_A 22 TPAAVRELVLDNCKS--------N------D----GKIEGLTAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELS 79 (168)
T ss_dssp CTTSCSEEECCSCBC--------B------T----TBCSSCCGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEE
T ss_pred CcccCCEEECCCCCC--------C------h----hhHHHHHHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECc
Confidence 457888888887620 0 0 1444555678888888888876 5554 346778888888888
Q ss_pred cCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCC----CCCCCCCc
Q 020667 187 SCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSE----GNSSTPKL 262 (323)
Q Consensus 187 ~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~----~~~~~~~L 262 (323)
+|.....++ ..+..+++|+.|+++++ .++.++....+..+++|++|++++| .+..+|. .+..+++|
T Consensus 80 ~N~l~~~~~--------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L 149 (168)
T 2ell_A 80 ENRIFGGLD--------MLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQL 149 (168)
T ss_dssp SCCCCSCCC--------HHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSC
T ss_pred CCcCchHHH--------HHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccC
Confidence 876433243 22345888888888886 6777653223467888888888876 4555665 56678888
Q ss_pred ceeEccC
Q 020667 263 HEVQWPG 269 (323)
Q Consensus 263 ~~L~l~~ 269 (323)
++|++.+
T Consensus 150 ~~L~l~~ 156 (168)
T 2ell_A 150 TYLDGYD 156 (168)
T ss_dssp CEETTEE
T ss_pred cEecCCC
Confidence 8888844
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.93 E-value=3.3e-09 Score=82.82 Aligned_cols=129 Identities=17% Similarity=0.119 Sum_probs=70.4
Q ss_pred cCCcCEEecccccccc--cccccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEE
Q 020667 81 FPQLQYLKMFNLENFT--SFCTSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLV 158 (323)
Q Consensus 81 l~~L~~L~l~~~~~l~--~~~~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~ 158 (323)
.++|+.|+++++. +. .++.. +..+++|++|++++|. + ..+ ..+..+++|++|+
T Consensus 16 ~~~l~~L~l~~n~-l~~~~~~~~---~~~l~~L~~L~l~~n~--------------l------~~~-~~~~~l~~L~~L~ 70 (149)
T 2je0_A 16 PSDVKELVLDNSR-SNEGKLEGL---TDEFEELEFLSTINVG--------------L------TSI-ANLPKLNKLKKLE 70 (149)
T ss_dssp GGGCSEEECTTCB-CBTTBCCSC---CTTCTTCCEEECTTSC--------------C------CCC-TTCCCCTTCCEEE
T ss_pred CccCeEEEccCCc-CChhHHHHH---HhhcCCCcEEECcCCC--------------C------CCc-hhhhcCCCCCEEE
Confidence 4566777776663 33 44443 2366777777776651 1 111 2345567777777
Q ss_pred eecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecC--CCccccCC
Q 020667 159 VSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCS--GNCAFKFP 236 (323)
Q Consensus 159 l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~--~~~~~~l~ 236 (323)
+++|.-...+ +..+..+++|++|++++|. +..++. ...+..+++|++|+++++ .++.++. ......++
T Consensus 71 Ls~n~i~~~~--~~~~~~l~~L~~L~ls~N~-i~~~~~------~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~ 140 (149)
T 2je0_A 71 LSDNRVSGGL--EVLAEKCPNLTHLNLSGNK-IKDLST------IEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLP 140 (149)
T ss_dssp CCSSCCCSCT--HHHHHHCTTCCEEECTTSC-CCSHHH------HGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCT
T ss_pred CCCCcccchH--HHHhhhCCCCCEEECCCCc-CCChHH------HHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCC
Confidence 7776532223 4455567777777777765 333320 022355667777777765 4555543 01134566
Q ss_pred cccEEeec
Q 020667 237 SLERLVLD 244 (323)
Q Consensus 237 ~L~~L~l~ 244 (323)
+|++|+++
T Consensus 141 ~L~~L~l~ 148 (149)
T 2je0_A 141 QLTYLDGY 148 (149)
T ss_dssp TCCEETTB
T ss_pred CcccccCC
Confidence 66666654
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.92 E-value=3.5e-11 Score=114.84 Aligned_cols=203 Identities=19% Similarity=0.154 Sum_probs=127.2
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEe----eccccccCCCccccCCcCEEecccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIV----MDNQEERKNNNVMFPQLQYLKMFNLENFT 96 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~----~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 96 (323)
.+++|+.|++++ +.++.+ |.+ ++++++|+.|+++++..+..+.. ....+..+..+..+++|+.|+......+.
T Consensus 347 ~~~~L~~L~Ls~-n~L~~L-p~~-i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 347 TDEQLFRCELSV-EKSTVL-QSE-LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp TTTTSSSCCCCH-HHHHHH-HHH-HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred cCccceeccCCh-hhHHhh-HHH-HHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 678899999998 778764 766 78889999988765421110000 00011222333456666666622222222
Q ss_pred cccccCc-----cccCCCCccEEEEcCC-----chhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcc
Q 020667 97 SFCTSNL-----GILEFPSLKELWISGC-----PKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLK 166 (323)
Q Consensus 97 ~~~~~~~-----~~~~l~~L~~L~l~~c-----p~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~ 166 (323)
.+..... .......|+.|++++| |. ++.+++|+.| .+.++ .+..+|..++.+++|+.|++++|. ++
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L-~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~ 499 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHL-DLSHN-RLRALPPALAALRCLEVLQASDNA-LE 499 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEE-ECCSS-CCCCCCGGGGGCTTCCEEECCSSC-CC
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEe-ecCcc-cccccchhhhcCCCCCEEECCCCC-CC
Confidence 2111000 0001235777777776 43 5556666666 44444 455888889999999999999985 66
Q ss_pred eecchhHHhccccccEEEEccCccccee--eeccCcccccccccccccCeeecccccccceecCCC--ccccCCcccEEe
Q 020667 167 IVLTFSIAKTLVRLEYMEIESCDRITEI--VLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGN--CAFKFPSLERLV 242 (323)
Q Consensus 167 ~l~~~~~l~~l~~L~~L~l~~c~~l~~i--~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~--~~~~l~~L~~L~ 242 (323)
.+ + .++++++|+.|++++|. +..+ | ..+..+++|+.|+++++ .++.++... ....+|+|+.|+
T Consensus 500 ~l--p-~l~~l~~L~~L~Ls~N~-l~~~~~p--------~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 500 NV--D-GVANLPRLQELLLCNNR-LQQSAAI--------QPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CC--G-GGTTCSSCCEEECCSSC-CCSSSTT--------GGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CC--c-ccCCCCCCcEEECCCCC-CCCCCCc--------HHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccC
Confidence 55 4 68899999999999875 5544 4 45678999999999996 677776533 123488898885
Q ss_pred e
Q 020667 243 L 243 (323)
Q Consensus 243 l 243 (323)
+
T Consensus 567 l 567 (567)
T 1dce_A 567 T 567 (567)
T ss_dssp C
T ss_pred C
Confidence 3
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.92 E-value=2.6e-09 Score=86.02 Aligned_cols=130 Identities=15% Similarity=0.218 Sum_probs=84.2
Q ss_pred ccccCCcccEEeeecccccceeccchhHhcC-CCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccc
Q 020667 18 MSCGIQNLMHLTLRSCMNLRYLFSSSIVSSF-VRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFT 96 (323)
Q Consensus 18 ~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l-~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 96 (323)
+. .+++|++|++++ +.++.+ |. +..+ ++|++|+++++. ++.+ .. +..+++|++|+++++ .+.
T Consensus 15 ~~-~~~~L~~L~l~~-n~l~~i-~~--~~~~~~~L~~L~Ls~N~-l~~~---~~-------l~~l~~L~~L~Ls~N-~l~ 77 (176)
T 1a9n_A 15 YT-NAVRDRELDLRG-YKIPVI-EN--LGATLDQFDAIDFSDNE-IRKL---DG-------FPLLRRLKTLLVNNN-RIC 77 (176)
T ss_dssp EE-CTTSCEEEECTT-SCCCSC-CC--GGGGTTCCSEEECCSSC-CCEE---CC-------CCCCSSCCEEECCSS-CCC
T ss_pred cC-CcCCceEEEeeC-CCCchh-HH--hhhcCCCCCEEECCCCC-CCcc---cc-------cccCCCCCEEECCCC-ccc
Confidence 45 788999999998 567764 54 3444 499999999874 4422 22 237888888888887 466
Q ss_pred cccccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCC--CCCCCCCCCEEEeecCcCcceecchh--
Q 020667 97 SFCTSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVP--SSTSFQNLTNLVVSCCKGLKIVLTFS-- 172 (323)
Q Consensus 97 ~~~~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~l~~~~-- 172 (323)
.++... +..+++|++|++++|. ++++|. .+..+++|++|++++|+ +..+ +.
T Consensus 78 ~~~~~~--~~~l~~L~~L~L~~N~--------------------i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~--~~~~ 132 (176)
T 1a9n_A 78 RIGEGL--DQALPDLTELILTNNS--------------------LVELGDLDPLASLKSLTYLCILRNP-VTNK--KHYR 132 (176)
T ss_dssp EECSCH--HHHCTTCCEEECCSCC--------------------CCCGGGGGGGGGCTTCCEEECCSSG-GGGS--TTHH
T ss_pred ccCcch--hhcCCCCCEEECCCCc--------------------CCcchhhHhhhcCCCCCEEEecCCC-CCCc--HhHH
Confidence 665442 1367788888887762 112222 35567778888887775 3333 22
Q ss_pred --HHhccccccEEEEccCc
Q 020667 173 --IAKTLVRLEYMEIESCD 189 (323)
Q Consensus 173 --~l~~l~~L~~L~l~~c~ 189 (323)
.+..+++|+.|+++++.
T Consensus 133 ~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 133 LYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHHHHHCTTCSEETTEECC
T ss_pred HHHHHHCCccceeCCCcCC
Confidence 35667777777776654
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.90 E-value=8.3e-10 Score=86.29 Aligned_cols=128 Identities=16% Similarity=0.131 Sum_probs=91.5
Q ss_pred CCCCccEEEEcCCchhhhhccCCcceeeecCCCCc-cccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEE
Q 020667 107 EFPSLKELWISGCPKFMERYNRTTNILTERGCDHL-VDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEI 185 (323)
Q Consensus 107 ~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l 185 (323)
.+++|+.|++++|. .. +.+|..+..+++|++|++++|. ++.+ ..+..+++|+.|++
T Consensus 15 ~~~~l~~L~l~~n~-------------------l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~L 71 (149)
T 2je0_A 15 TPSDVKELVLDNSR-------------------SNEGKLEGLTDEFEELEFLSTINVG-LTSI---ANLPKLNKLKKLEL 71 (149)
T ss_dssp CGGGCSEEECTTCB-------------------CBTTBCCSCCTTCTTCCEEECTTSC-CCCC---TTCCCCTTCCEEEC
T ss_pred CCccCeEEEccCCc-------------------CChhHHHHHHhhcCCCcEEECcCCC-CCCc---hhhhcCCCCCEEEC
Confidence 34677777777652 11 2455556788999999999884 5554 45678999999999
Q ss_pred ccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCC----CCCCCCC
Q 020667 186 ESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSE----GNSSTPK 261 (323)
Q Consensus 186 ~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~----~~~~~~~ 261 (323)
++|.....++ ..+..+++|++|+++++ .++.++.......+++|++|++++| .++.+|. .+..+++
T Consensus 72 s~n~i~~~~~--------~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~ 141 (149)
T 2je0_A 72 SDNRVSGGLE--------VLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQ 141 (149)
T ss_dssp CSSCCCSCTH--------HHHHHCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTT
T ss_pred CCCcccchHH--------HHhhhCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCC
Confidence 9887433344 23346899999999996 5777642123467899999999887 4566665 4567889
Q ss_pred cceeEc
Q 020667 262 LHEVQW 267 (323)
Q Consensus 262 L~~L~l 267 (323)
|+.|++
T Consensus 142 L~~L~l 147 (149)
T 2je0_A 142 LTYLDG 147 (149)
T ss_dssp CCEETT
T ss_pred cccccC
Confidence 999877
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.89 E-value=1.7e-08 Score=90.77 Aligned_cols=155 Identities=17% Similarity=0.117 Sum_probs=109.3
Q ss_pred cCCcCEEecccccccccccccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccC-CCCCCCCCCCEEEe
Q 020667 81 FPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLV-PSSTSFQNLTNLVV 159 (323)
Q Consensus 81 l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~-~~~~~l~~L~~L~l 159 (323)
.+.++.|+++++ .+..++.... ...+++|++|++++|. +..++ ..+..+++|++|++
T Consensus 38 ~~~l~~L~Ls~N-~l~~l~~~~~-~~~l~~L~~L~L~~N~--------------------i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 38 PSYTALLDLSHN-NLSRLRAEWT-PTRLTNLHSLLLSHNH--------------------LNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp CTTCSEEECCSS-CCCEECTTSS-SSCCTTCCEEECCSSC--------------------CCEECTTTTTTCTTCCEEEC
T ss_pred CCCCCEEECCCC-CCCccChhhh-hhcccccCEEECCCCc--------------------CCccChhhccCCCCCCEEEC
Confidence 456899999987 5777766542 1168899999988761 22222 34678899999999
Q ss_pred ecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCcc--ccCCc
Q 020667 160 SCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCA--FKFPS 237 (323)
Q Consensus 160 ~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~--~~l~~ 237 (323)
++|. ++.++ +..+.++++|+.|++++|. +..++ ...+..+++|+.|+++++ .++.++..... ..+++
T Consensus 96 s~N~-l~~~~-~~~~~~l~~L~~L~L~~N~-i~~~~-------~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~ 164 (361)
T 2xot_A 96 SSNH-LHTLD-EFLFSDLQALEVLLLYNNH-IVVVD-------RNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPK 164 (361)
T ss_dssp CSSC-CCEEC-TTTTTTCTTCCEEECCSSC-CCEEC-------TTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTT
T ss_pred CCCc-CCcCC-HHHhCCCcCCCEEECCCCc-ccEEC-------HHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCc
Confidence 9985 66653 3457889999999999876 55553 134567899999999995 78888764311 45899
Q ss_pred ccEEeecCCCCCcccCC-CCCCCCC--cceeEccC
Q 020667 238 LERLVLDDCPSMKIFSE-GNSSTPK--LHEVQWPG 269 (323)
Q Consensus 238 L~~L~l~~c~~l~~lp~-~~~~~~~--L~~L~l~~ 269 (323)
|++|+++++ .++.+|. .+..+++ ++.|++.+
T Consensus 165 L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 165 LMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp CCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred CCEEECCCC-CCCccCHHHhhhccHhhcceEEecC
Confidence 999999885 5666763 2334554 47889943
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.88 E-value=3.1e-09 Score=104.37 Aligned_cols=86 Identities=17% Similarity=0.153 Sum_probs=38.7
Q ss_pred CCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceec
Q 020667 148 STSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFC 227 (323)
Q Consensus 148 ~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~ 227 (323)
+..+++|++|+|++|. ++.+ +..+.++++|+.|+|++|. +..+| ..++.+++|++|+|+++ .++.+|
T Consensus 243 ~~~l~~L~~L~Ls~N~-l~~l--p~~~~~l~~L~~L~Ls~N~-l~~lp--------~~~~~l~~L~~L~L~~N-~l~~lp 309 (727)
T 4b8c_D 243 IFKYDFLTRLYLNGNS-LTEL--PAEIKNLSNLRVLDLSHNR-LTSLP--------AELGSCFQLKYFYFFDN-MVTTLP 309 (727)
T ss_dssp GGGCCSCSCCBCTTSC-CSCC--CGGGGGGTTCCEEECTTSC-CSSCC--------SSGGGGTTCSEEECCSS-CCCCCC
T ss_pred hcCCCCCCEEEeeCCc-Cccc--ChhhhCCCCCCEEeCcCCc-CCccC--------hhhcCCCCCCEEECCCC-CCCccC
Confidence 3344555555555442 3333 2334445555555555443 33343 22344455555555543 444444
Q ss_pred CCCccccCCcccEEeecCCCC
Q 020667 228 SGNCAFKFPSLERLVLDDCPS 248 (323)
Q Consensus 228 ~~~~~~~l~~L~~L~l~~c~~ 248 (323)
.. +..+++|++|++++|+.
T Consensus 310 ~~--~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 310 WE--FGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp SS--TTSCTTCCCEECTTSCC
T ss_pred hh--hhcCCCccEEeCCCCcc
Confidence 32 24445555555544443
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.87 E-value=1.9e-08 Score=82.12 Aligned_cols=123 Identities=15% Similarity=0.127 Sum_probs=90.8
Q ss_pred CccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeeccc
Q 020667 140 HLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLN 219 (323)
Q Consensus 140 ~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~ 219 (323)
.++.+|..+. .+|++|+++++. ++.++....+..+++|++|+++++. +..++ ...+..+++|++|++++
T Consensus 19 ~l~~ip~~~~--~~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~-------~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 19 GLKEIPRDIP--LHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQ-LTGIE-------PNAFEGASHIQELQLGE 87 (192)
T ss_dssp CCSSCCSCCC--TTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSC-CCCBC-------TTTTTTCTTCCEEECCS
T ss_pred CcCcCccCCC--CCCCEEECCCCc-CCccCCccccccCCCCCEEECCCCC-CCCcC-------HhHcCCcccCCEEECCC
Confidence 3456665443 389999999885 5655332347889999999999876 44443 14456789999999999
Q ss_pred ccccceecCCCccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEccCccccccccc
Q 020667 220 LESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQWPGEARWAWKDD 278 (323)
Q Consensus 220 c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~~~~~~~~~~ 278 (323)
+ +++.++... +..+++|++|+++++..-+..|..+..+++|++|++ ..+.|.++
T Consensus 88 N-~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L---~~N~l~c~ 141 (192)
T 1w8a_A 88 N-KIKEISNKM-FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL---ASNPFNCN 141 (192)
T ss_dssp C-CCCEECSSS-STTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC---TTCCBCCS
T ss_pred C-cCCccCHHH-hcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEe---CCCCccCc
Confidence 5 788887653 467899999999987655566777888999999999 55555543
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.82 E-value=1.1e-08 Score=82.20 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=15.7
Q ss_pred CCCCCCEEEeecCcCcceecchhHHhccccccEEEEccC
Q 020667 150 SFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESC 188 (323)
Q Consensus 150 ~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c 188 (323)
.+++|++|++++|. ++.++ +..+..+++|++|++++|
T Consensus 62 ~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~L~~N 98 (176)
T 1a9n_A 62 LLRRLKTLLVNNNR-ICRIG-EGLDQALPDLTELILTNN 98 (176)
T ss_dssp CCSSCCEEECCSSC-CCEEC-SCHHHHCTTCCEEECCSC
T ss_pred cCCCCCEEECCCCc-ccccC-cchhhcCCCCCEEECCCC
Confidence 34445555554442 33331 122244445555555444
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.75 E-value=3.3e-09 Score=104.18 Aligned_cols=63 Identities=11% Similarity=0.028 Sum_probs=39.2
Q ss_pred hhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccCccccCCCCccEEEEcCC
Q 020667 43 SIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGC 119 (323)
Q Consensus 43 ~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 119 (323)
..+..+++|+.|+|+++.. . .++.. +..+++|++|+|+++ .+..+|... ..+++|++|+|++|
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l-~--~l~~~-------~~~l~~L~~L~Ls~N-~l~~lp~~~---~~l~~L~~L~Ls~N 280 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQI-F--NISAN-------IFKYDFLTRLYLNGN-SLTELPAEI---KNLSNLRVLDLSHN 280 (727)
T ss_dssp ----CCCCCCEEECTTSCC-S--CCCGG-------GGGCCSCSCCBCTTS-CCSCCCGGG---GGGTTCCEEECTTS
T ss_pred hhhccCCCCcEEECCCCCC-C--CCChh-------hcCCCCCCEEEeeCC-cCcccChhh---hCCCCCCEEeCcCC
Confidence 3366778888888887653 2 22222 236778888888876 455666553 47788888887776
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.70 E-value=1.3e-07 Score=77.20 Aligned_cols=89 Identities=18% Similarity=0.219 Sum_probs=49.7
Q ss_pred CCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceec
Q 020667 148 STSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFC 227 (323)
Q Consensus 148 ~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~ 227 (323)
+..+++|++|+++++. ++.+. +..+.++++|++|+++++. +..++ ...+..+++|++|+++++ +++.+.
T Consensus 50 ~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~-------~~~~~~l~~L~~L~L~~N-~l~~~~ 118 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQ-LTGIE-PNAFEGASHIQELQLGENK-IKEIS-------NKMFLGLHQLKTLNLYDN-QISCVM 118 (192)
T ss_dssp GGGCTTCCEEECCSSC-CCCBC-TTTTTTCTTCCEEECCSCC-CCEEC-------SSSSTTCTTCCEEECCSS-CCCEEC
T ss_pred cccCCCCCEEECCCCC-CCCcC-HhHcCCcccCCEEECCCCc-CCccC-------HHHhcCCCCCCEEECCCC-cCCeeC
Confidence 4455666666666654 33321 3345566666666666654 44443 122345667777777664 555554
Q ss_pred CCCccccCCcccEEeecCCCC
Q 020667 228 SGNCAFKFPSLERLVLDDCPS 248 (323)
Q Consensus 228 ~~~~~~~l~~L~~L~l~~c~~ 248 (323)
... +..+++|++|++++++.
T Consensus 119 ~~~-~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 119 PGS-FEHLNSLTSLNLASNPF 138 (192)
T ss_dssp TTS-STTCTTCCEEECTTCCB
T ss_pred HHH-hhcCCCCCEEEeCCCCc
Confidence 332 34567777777766554
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.69 E-value=2e-10 Score=94.43 Aligned_cols=108 Identities=17% Similarity=0.159 Sum_probs=55.9
Q ss_pred HhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccCccccCCCCccEEEEcCCchhhh
Q 020667 45 VSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCPKFME 124 (323)
Q Consensus 45 ~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp~~~~ 124 (323)
++.+++|++|+++++. +.. ++ .+..+++|++|+++++ .+..++... ..+++|++|++++|.
T Consensus 44 ~~~l~~L~~L~ls~n~-l~~--l~--------~~~~l~~L~~L~l~~n-~l~~l~~~~---~~~~~L~~L~L~~N~---- 104 (198)
T 1ds9_A 44 LSTLKACKHLALSTNN-IEK--IS--------SLSGMENLRILSLGRN-LIKKIENLD---AVADTLEELWISYNQ---- 104 (198)
T ss_dssp HHHTTTCSEEECSEEE-ESC--CC--------CHHHHTTCCEEEEEEE-EECSCSSHH---HHHHHCSEEEEEEEE----
T ss_pred HhcCCCCCEEECCCCC-Ccc--cc--------ccccCCCCCEEECCCC-Ccccccchh---hcCCcCCEEECcCCc----
Confidence 5677777777777652 221 11 2235667777777665 344444331 234566666665541
Q ss_pred hccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCc
Q 020667 125 RYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCD 189 (323)
Q Consensus 125 ~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~ 189 (323)
+..+| .+..+++|++|++++|. ++.++....+..+++|++|++++|+
T Consensus 105 ----------------l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 105 ----------------IASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp ----------------CCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred ----------------CCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCc
Confidence 01111 23345566666666553 3333212245556666666666654
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.69 E-value=1.1e-07 Score=77.67 Aligned_cols=102 Identities=16% Similarity=0.192 Sum_probs=58.4
Q ss_pred CCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCc
Q 020667 152 QNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNC 231 (323)
Q Consensus 152 ~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~ 231 (323)
++|++|+++++. ++.+ +..+.++++|+.|+++++. +..++ ...+..+++|++|+++++ .++.++...
T Consensus 31 ~~l~~L~L~~n~-i~~i--p~~~~~l~~L~~L~Ls~N~-i~~i~-------~~~f~~l~~L~~L~Ls~N-~l~~i~~~~- 97 (193)
T 2wfh_A 31 RDVTELYLDGNQ-FTLV--PKELSNYKHLTLIDLSNNR-ISTLS-------NQSFSNMTQLLTLILSYN-RLRCIPPRT- 97 (193)
T ss_dssp TTCCEEECCSSC-CCSC--CGGGGGCTTCCEEECCSSC-CCCCC-------TTTTTTCTTCCEEECCSS-CCCBCCTTT-
T ss_pred CCCCEEECCCCc-Cchh--HHHhhcccCCCEEECCCCc-CCEeC-------HhHccCCCCCCEEECCCC-ccCEeCHHH-
Confidence 456666666553 4444 2445666666666666654 33333 123345666677777664 566665432
Q ss_pred cccCCcccEEeecCCCCCcccCCC-CCCCCCcceeEc
Q 020667 232 AFKFPSLERLVLDDCPSMKIFSEG-NSSTPKLHEVQW 267 (323)
Q Consensus 232 ~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~L~~L~l 267 (323)
+..+++|++|+++++ .++.+|.. +..+++|+.|++
T Consensus 98 f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L 133 (193)
T 2wfh_A 98 FDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAI 133 (193)
T ss_dssp TTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEEC
T ss_pred hCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEe
Confidence 345667777777663 45555553 445677777777
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.68 E-value=1.7e-07 Score=75.17 Aligned_cols=123 Identities=19% Similarity=0.214 Sum_probs=90.7
Q ss_pred CccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeeccc
Q 020667 140 HLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLN 219 (323)
Q Consensus 140 ~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~ 219 (323)
.+..+|.. ..++|++|+++++. ++.++ +..+..+++|++|+++++. +..++ ...+..+++|+.|++++
T Consensus 18 ~l~~~p~~--~~~~l~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~-------~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 18 GLTSVPTG--IPSSATRLELESNK-LQSLP-HGVFDKLTQLTKLSLSQNQ-IQSLP-------DGVFDKLTKLTILYLHE 85 (177)
T ss_dssp CCSSCCTT--CCTTCSEEECCSSC-CCCCC-TTTTTTCTTCSEEECCSSC-CCCCC-------TTTTTTCTTCCEEECCS
T ss_pred CCccCCCC--CCCCCcEEEeCCCc-ccEeC-HHHhcCcccccEEECCCCc-ceEeC-------hhHccCCCccCEEECCC
Confidence 34555543 34799999999885 55542 3456789999999999875 56665 12346789999999999
Q ss_pred ccccceecCCCccccCCcccEEeecCCCCCcccCCCC-CCCCCcceeEccCccccccccchh
Q 020667 220 LESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGN-SSTPKLHEVQWPGEARWAWKDDLN 280 (323)
Q Consensus 220 c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~-~~~~~L~~L~l~~~~~~~~~~~l~ 280 (323)
+ +++.++... +..+++|++|+++++ .++.+|... ..+++|++|++ ..+.+.+..+
T Consensus 86 N-~l~~~~~~~-~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l---~~N~~~~~~~ 141 (177)
T 2o6r_A 86 N-KLQSLPNGV-FDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWL---HTNPWDCSCP 141 (177)
T ss_dssp S-CCCCCCTTT-TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEEC---CSSCBCCCHH
T ss_pred C-CccccCHHH-hhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEe---cCCCeeccCc
Confidence 5 788877643 457899999999886 667787764 57899999999 5566665443
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.67 E-value=2.2e-06 Score=78.09 Aligned_cols=200 Identities=11% Similarity=0.107 Sum_probs=119.7
Q ss_pred ccCCcCEEecccccccccccccCccccCCCCccEEEEcCC-----chhhhhccCCcceeeecCCCCccccCCCCCCCCCC
Q 020667 80 MFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGC-----PKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNL 154 (323)
Q Consensus 80 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c-----p~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L 154 (323)
.+++|+.+++.++ .+..++.... .+.+|+.+.+... ...+..+.+|+.+ .+. ..+..+......-++|
T Consensus 178 ~c~~L~~l~l~~n-~l~~I~~~aF---~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l-~l~--~~l~~I~~~aF~~~~L 250 (401)
T 4fdw_A 178 YCYNLKKADLSKT-KITKLPASTF---VYAGIEEVLLPVTLKEIGSQAFLKTSQLKTI-EIP--ENVSTIGQEAFRESGI 250 (401)
T ss_dssp TCTTCCEEECTTS-CCSEECTTTT---TTCCCSEEECCTTCCEECTTTTTTCTTCCCE-ECC--TTCCEECTTTTTTCCC
T ss_pred CcccCCeeecCCC-cceEechhhE---eecccCEEEeCCchheehhhHhhCCCCCCEE-ecC--CCccCccccccccCCc
Confidence 5777888887654 5666666543 4677777777543 1122223344444 222 2344444333333688
Q ss_pred CEEEeecCcCcceecchhHHhccccccEEEEccCccc----ceeeeccCcccccccccccccCeeecccccccceecCCC
Q 020667 155 TNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRI----TEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGN 230 (323)
Q Consensus 155 ~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l----~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~ 230 (323)
+.+.+.+ .++.+. ...+.++++|+.+.+.++... ..++ ...+..+++|+.+.+.+ +++.++...
T Consensus 251 ~~i~lp~--~i~~I~-~~aF~~c~~L~~l~l~~~~~~~~~~~~I~-------~~aF~~c~~L~~l~l~~--~i~~I~~~a 318 (401)
T 4fdw_A 251 TTVKLPN--GVTNIA-SRAFYYCPELAEVTTYGSTFNDDPEAMIH-------PYCLEGCPKLARFEIPE--SIRILGQGL 318 (401)
T ss_dssp SEEEEET--TCCEEC-TTTTTTCTTCCEEEEESSCCCCCTTCEEC-------TTTTTTCTTCCEECCCT--TCCEECTTT
T ss_pred cEEEeCC--CccEEC-hhHhhCCCCCCEEEeCCccccCCcccEEC-------HHHhhCCccCCeEEeCC--ceEEEhhhh
Confidence 8888854 356553 345678889999988764321 1233 23446788999999985 688887654
Q ss_pred ccccCCcccEEeecCCCCCcccCCC-CCCCCCcceeEccCcccc-----ccccchhhhceeeeccceeeeeeecCCCcc
Q 020667 231 CAFKFPSLERLVLDDCPSMKIFSEG-NSSTPKLHEVQWPGEARW-----AWKDDLNTTIQKVIFPAMVAGVWSDDGGLE 303 (323)
Q Consensus 231 ~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~L~~L~l~~~~~~-----~~~~~l~~~l~~l~~~~~~~~~~~~~~~~e 303 (323)
+..+++|+.+.+.+ .++.++.. ...| +|+.+.+.+..-. .+. .++..+..+.++...........+|.
T Consensus 319 -F~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~-~~~~~l~~l~vp~~~~~~y~~a~~W~ 392 (401)
T 4fdw_A 319 -LGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWY-GFPDDITVIRVPAESVEKYKNANGWR 392 (401)
T ss_dssp -TTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCC-CSCTTCCEEEECGGGHHHHHHSTTGG
T ss_pred -hcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCCCCccccccccc-CCCCCccEEEeCHHHHHHhhhccchh
Confidence 56788999999955 36777654 4567 9999999553211 121 23455667777765544433344454
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.67 E-value=1.8e-07 Score=76.34 Aligned_cols=108 Identities=13% Similarity=0.148 Sum_probs=81.8
Q ss_pred cCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCccccccc
Q 020667 127 NRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEV 206 (323)
Q Consensus 127 ~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~ 206 (323)
+.++.| .+.++ .+..+|..+..+++|++|+++++. ++.+. +..+.++++|++|+++++. +..++ ...+
T Consensus 31 ~~l~~L-~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~-~~~f~~l~~L~~L~Ls~N~-l~~i~-------~~~f 98 (193)
T 2wfh_A 31 RDVTEL-YLDGN-QFTLVPKELSNYKHLTLIDLSNNR-ISTLS-NQSFSNMTQLLTLILSYNR-LRCIP-------PRTF 98 (193)
T ss_dssp TTCCEE-ECCSS-CCCSCCGGGGGCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CCBCC-------TTTT
T ss_pred CCCCEE-ECCCC-cCchhHHHhhcccCCCEEECCCCc-CCEeC-HhHccCCCCCCEEECCCCc-cCEeC-------HHHh
Confidence 356666 34443 556788788899999999999885 55553 3457889999999999876 66665 2345
Q ss_pred ccccccCeeecccccccceecCCCccccCCcccEEeecCCCC
Q 020667 207 ITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPS 248 (323)
Q Consensus 207 ~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~ 248 (323)
..+++|+.|+++++ .++.++... +..+++|++|++++++.
T Consensus 99 ~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 99 DGLKSLRLLSLHGN-DISVVPEGA-FNDLSALSHLAIGANPL 138 (193)
T ss_dssp TTCTTCCEEECCSS-CCCBCCTTT-TTTCTTCCEEECCSSCE
T ss_pred CCCCCCCEEECCCC-CCCeeChhh-hhcCccccEEEeCCCCe
Confidence 67899999999995 788887653 45789999999988653
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.62 E-value=4.7e-10 Score=92.21 Aligned_cols=84 Identities=20% Similarity=0.211 Sum_probs=35.1
Q ss_pred CCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCC
Q 020667 150 SFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSG 229 (323)
Q Consensus 150 ~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~ 229 (323)
.+++|++|++++|. ++.+ +..+..+++|+.|++++|. +..++ .+..+++|+.|+++++ .++.++.-
T Consensus 68 ~l~~L~~L~l~~n~-l~~l--~~~~~~~~~L~~L~L~~N~-l~~l~---------~~~~l~~L~~L~l~~N-~i~~~~~~ 133 (198)
T 1ds9_A 68 GMENLRILSLGRNL-IKKI--ENLDAVADTLEELWISYNQ-IASLS---------GIEKLVNLRVLYMSNN-KITNWGEI 133 (198)
T ss_dssp HHTTCCEEEEEEEE-ECSC--SSHHHHHHHCSEEEEEEEE-CCCHH---------HHHHHHHSSEEEESEE-ECCCHHHH
T ss_pred cCCCCCEEECCCCC-cccc--cchhhcCCcCCEEECcCCc-CCcCC---------ccccCCCCCEEECCCC-cCCchhHH
Confidence 34445555554442 2332 2233344455555555442 22222 1234455555555543 33333220
Q ss_pred CccccCCcccEEeecCCC
Q 020667 230 NCAFKFPSLERLVLDDCP 247 (323)
Q Consensus 230 ~~~~~l~~L~~L~l~~c~ 247 (323)
.....+++|++|++++|+
T Consensus 134 ~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 134 DKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHHTTTTTCSEEEECSCH
T ss_pred HHHhcCCCCCEEEecCCc
Confidence 112345555555555544
No 136
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.58 E-value=3.3e-08 Score=78.99 Aligned_cols=90 Identities=17% Similarity=0.241 Sum_probs=68.8
Q ss_pred CCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCccccccccc----ccccCeeecccccccceec
Q 020667 152 QNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVIT----FRELKELKLLNLESLTSFC 227 (323)
Q Consensus 152 ~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~----~~~L~~L~l~~c~~L~~l~ 227 (323)
.+|++|++++|. +++.. ...+.++++|++|++++|..+++... ..+.. .++|++|+|++|+++++-.
T Consensus 61 ~~L~~LDLs~~~-Itd~G-L~~L~~~~~L~~L~L~~C~~ItD~gL-------~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIG-FDHMEGLQYVEKIRLCKCHYIEDGCL-------ERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp CCEEEEEEESCC-CCGGG-GGGGTTCSCCCEEEEESCTTCCHHHH-------HHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred ceEeEEeCcCCC-ccHHH-HHHhcCCCCCCEEEeCCCCccCHHHH-------HHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 479999999997 76654 34567899999999999998876421 11122 3589999999999998865
Q ss_pred CCCccccCCcccEEeecCCCCCcc
Q 020667 228 SGNCAFKFPSLERLVLDDCPSMKI 251 (323)
Q Consensus 228 ~~~~~~~l~~L~~L~l~~c~~l~~ 251 (323)
... ...+++|++|++++|+.++.
T Consensus 132 l~~-L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 132 IIA-LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHH-GGGCTTCCEEEEESCTTCCC
T ss_pred HHH-HhcCCCCCEEECCCCCCCCc
Confidence 543 45689999999999998864
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.56 E-value=4.7e-07 Score=72.58 Aligned_cols=90 Identities=20% Similarity=0.218 Sum_probs=57.6
Q ss_pred CCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceec
Q 020667 148 STSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFC 227 (323)
Q Consensus 148 ~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~ 227 (323)
+..+++|++|+++++. ++.++ +..+..+++|+.|+++++. +..++ ...+..+++|+.|+++++ .++.++
T Consensus 48 ~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~~-------~~~~~~l~~L~~L~l~~N-~l~~~~ 116 (177)
T 2o6r_A 48 FDKLTQLTKLSLSQNQ-IQSLP-DGVFDKLTKLTILYLHENK-LQSLP-------NGVFDKLTQLKELALDTN-QLKSVP 116 (177)
T ss_dssp TTTCTTCSEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CCCCC-------TTTTTTCTTCCEEECCSS-CCSCCC
T ss_pred hcCcccccEEECCCCc-ceEeC-hhHccCCCccCEEECCCCC-ccccC-------HHHhhCCcccCEEECcCC-cceEeC
Confidence 3566777777777764 44442 2335677778888877764 44444 122346778888888875 677776
Q ss_pred CCCccccCCcccEEeecCCCCC
Q 020667 228 SGNCAFKFPSLERLVLDDCPSM 249 (323)
Q Consensus 228 ~~~~~~~l~~L~~L~l~~c~~l 249 (323)
... +..+++|++|++++++..
T Consensus 117 ~~~-~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 117 DGI-FDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TTT-TTTCTTCCEEECCSSCBC
T ss_pred HHH-hcCCcccCEEEecCCCee
Confidence 543 345788888888877543
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.52 E-value=1.9e-06 Score=76.25 Aligned_cols=102 Identities=13% Similarity=0.055 Sum_probs=80.8
Q ss_pred CCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccC-eeecccccccceecCC
Q 020667 151 FQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELK-ELKLLNLESLTSFCSG 229 (323)
Q Consensus 151 l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~-~L~l~~c~~L~~l~~~ 229 (323)
+++|+.+++.++. ++.++ ...+.++++|+.+++.++ +..++ ...+..+++|+ .+.+.+ +++.++..
T Consensus 225 ~~~L~~l~L~~n~-i~~I~-~~aF~~~~~L~~l~l~~n--i~~I~-------~~aF~~~~~L~~~l~l~~--~l~~I~~~ 291 (329)
T 3sb4_A 225 MPNLVSLDISKTN-ATTIP-DFTFAQKKYLLKIKLPHN--LKTIG-------QRVFSNCGRLAGTLELPA--SVTAIEFG 291 (329)
T ss_dssp CTTCCEEECTTBC-CCEEC-TTTTTTCTTCCEEECCTT--CCEEC-------TTTTTTCTTCCEEEEECT--TCCEECTT
T ss_pred cCCCeEEECCCCC-cceec-HhhhhCCCCCCEEECCcc--cceeh-------HHHhhCChhccEEEEEcc--cceEEchh
Confidence 6899999999764 67764 346788999999999875 77776 23456788999 999988 78888775
Q ss_pred CccccCCcccEEeecCCCCCcccCCC-CCCCCCcceeEc
Q 020667 230 NCAFKFPSLERLVLDDCPSMKIFSEG-NSSTPKLHEVQW 267 (323)
Q Consensus 230 ~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~L~~L~l 267 (323)
. +..+++|+.|++.. ..++.++.. ...|++|+.++.
T Consensus 292 a-F~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 292 A-FMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp T-TTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred h-hhCCccCCEEEeCC-CccCccchhhhcCCcchhhhcc
Confidence 4 67899999999966 578888774 568999999874
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.44 E-value=1.5e-05 Score=72.54 Aligned_cols=210 Identities=10% Similarity=0.093 Sum_probs=131.0
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccC
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSN 102 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 102 (323)
.+|+.+.+.+ .++.+ +...+..+++|+.+++.++ .++ .++... ..+.+|+.+.+.+ .++.+....
T Consensus 157 ~~L~~i~lp~--~l~~I-~~~aF~~c~~L~~l~l~~n-~l~--~I~~~a-------F~~~~L~~l~lp~--~l~~I~~~a 221 (401)
T 4fdw_A 157 STVQEIVFPS--TLEQL-KEDIFYYCYNLKKADLSKT-KIT--KLPAST-------FVYAGIEEVLLPV--TLKEIGSQA 221 (401)
T ss_dssp CCCCEEECCT--TCCEE-CSSTTTTCTTCCEEECTTS-CCS--EECTTT-------TTTCCCSEEECCT--TCCEECTTT
T ss_pred CCceEEEeCC--CccEe-hHHHhhCcccCCeeecCCC-cce--Eechhh-------EeecccCEEEeCC--chheehhhH
Confidence 4789999875 67775 5455788999999998754 344 222221 1346777777753 355555443
Q ss_pred ccccCCCCccEEEEcCCc-----hhhhhccCCcceeeecCCCCccccC-CCCCCCCCCCEEEeecCcCc----ceecchh
Q 020667 103 LGILEFPSLKELWISGCP-----KFMERYNRTTNILTERGCDHLVDLV-PSSTSFQNLTNLVVSCCKGL----KIVLTFS 172 (323)
Q Consensus 103 ~~~~~l~~L~~L~l~~cp-----~~~~~l~~L~~L~~i~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l----~~l~~~~ 172 (323)
+..+++|+.+.+.+.- ..+.. .+|+.+ .+ -..+..++ ....++++|+.+.+.++..- ..++ ..
T Consensus 222 --F~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i-~l--p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~-~~ 294 (401)
T 4fdw_A 222 --FLKTSQLKTIEIPENVSTIGQEAFRE-SGITTV-KL--PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIH-PY 294 (401)
T ss_dssp --TTTCTTCCCEECCTTCCEECTTTTTT-CCCSEE-EE--ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEEC-TT
T ss_pred --hhCCCCCCEEecCCCccCcccccccc-CCccEE-Ee--CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEEC-HH
Confidence 3567777777776531 11111 233333 12 12233332 23557889999999875321 2332 34
Q ss_pred HHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCccc
Q 020667 173 IAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIF 252 (323)
Q Consensus 173 ~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l 252 (323)
.+.++++|+.+.+.+ .+..+. ...+..+++|+.+.|.+ +++.+.... +..+ +|+.+.+.++ ....+
T Consensus 295 aF~~c~~L~~l~l~~--~i~~I~-------~~aF~~c~~L~~l~lp~--~l~~I~~~a-F~~~-~L~~l~l~~n-~~~~l 360 (401)
T 4fdw_A 295 CLEGCPKLARFEIPE--SIRILG-------QGLLGGNRKVTQLTIPA--NVTQINFSA-FNNT-GIKEVKVEGT-TPPQV 360 (401)
T ss_dssp TTTTCTTCCEECCCT--TCCEEC-------TTTTTTCCSCCEEEECT--TCCEECTTS-SSSS-CCCEEEECCS-SCCBC
T ss_pred HhhCCccCCeEEeCC--ceEEEh-------hhhhcCCCCccEEEECc--cccEEcHHh-CCCC-CCCEEEEcCC-CCccc
Confidence 578899999999974 466665 23445678999999965 688887655 5567 9999999875 44445
Q ss_pred CCC-CCCC-CCcceeEcc
Q 020667 253 SEG-NSST-PKLHEVQWP 268 (323)
Q Consensus 253 p~~-~~~~-~~L~~L~l~ 268 (323)
+.+ ...+ .+++.+++.
T Consensus 361 ~~~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 361 FEKVWYGFPDDITVIRVP 378 (401)
T ss_dssp CCSSCCCSCTTCCEEEEC
T ss_pred ccccccCCCCCccEEEeC
Confidence 543 3345 478999993
No 140
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.38 E-value=9.2e-08 Score=76.40 Aligned_cols=90 Identities=11% Similarity=0.166 Sum_probs=64.4
Q ss_pred CCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccc----cCCcCEEeccccccccc
Q 020667 22 IQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVM----FPQLQYLKMFNLENFTS 97 (323)
Q Consensus 22 l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~----l~~L~~L~l~~~~~l~~ 97 (323)
-.+|++|++++|. +++..-.. +..+++|+.|+|++|..+++-.+. .+.. .++|++|++++|+++++
T Consensus 60 ~~~L~~LDLs~~~-Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~--------~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 60 KYKIQAIDATDSC-IMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLE--------RLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CCCEEEEEEESCC-CCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHH--------HHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred CceEeEEeCcCCC-ccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHH--------HHHhcccccCCCCEEEcCCCCcCCH
Confidence 3469999999986 76543333 578999999999999988721111 1112 35799999999998876
Q ss_pred ccccCccccCCCCccEEEEcCCchhh
Q 020667 98 FCTSNLGILEFPSLKELWISGCPKFM 123 (323)
Q Consensus 98 ~~~~~~~~~~l~~L~~L~l~~cp~~~ 123 (323)
-.... ...+++|++|++++||...
T Consensus 130 ~Gl~~--L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 130 KGIIA--LHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HHHHH--GGGCTTCCEEEEESCTTCC
T ss_pred HHHHH--HhcCCCCCEEECCCCCCCC
Confidence 44332 2468999999999997543
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.27 E-value=2.2e-06 Score=68.28 Aligned_cols=85 Identities=16% Similarity=0.214 Sum_probs=60.8
Q ss_pred CCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccccccccc
Q 020667 22 IQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTS 101 (323)
Q Consensus 22 l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 101 (323)
.++|++|++++ +.++++.|.. +..+++|++|+++++. ++ .++.. .+..+++|++|+++++ .+..++..
T Consensus 29 ~~~l~~L~L~~-N~i~~~~~~~-~~~l~~L~~L~Ls~N~-l~--~l~~~------~f~~l~~L~~L~L~~N-~l~~~~~~ 96 (170)
T 3g39_A 29 PTTTQVLYLYD-NQITKLEPGV-FDRLTQLTRLDLDNNQ-LT--VLPAG------VFDKLTQLTQLSLNDN-QLKSIPRG 96 (170)
T ss_dssp CTTCSEEECCS-SCCCCCCTTT-TTTCTTCSEEECCSSC-CC--CCCTT------TTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred CCCCcEEEcCC-CcCCccChhh-hcCcccCCEEECCCCC-cC--ccChh------hccCCCCCCEEECCCC-ccCEeCHH
Confidence 47888999988 7888864544 6788999999998774 44 22211 1237888999999887 57777664
Q ss_pred CccccCCCCccEEEEcCCc
Q 020667 102 NLGILEFPSLKELWISGCP 120 (323)
Q Consensus 102 ~~~~~~l~~L~~L~l~~cp 120 (323)
. +..+++|++|+++++|
T Consensus 97 ~--~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 97 A--FDNLKSLTHIWLLNNP 113 (170)
T ss_dssp T--TTTCTTCCEEECCSSC
T ss_pred H--hcCCCCCCEEEeCCCC
Confidence 3 2478889999988874
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.26 E-value=1.8e-06 Score=69.14 Aligned_cols=85 Identities=16% Similarity=0.160 Sum_probs=59.7
Q ss_pred CCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccccccccc
Q 020667 22 IQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTS 101 (323)
Q Consensus 22 l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 101 (323)
.++|++|++++ +.++++.|.. ++.+++|++|+++++ .++ .++.. .+..+++|++|+++++ .+..++..
T Consensus 32 ~~~L~~L~Ls~-N~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~--~i~~~------~~~~l~~L~~L~L~~N-~l~~l~~~ 99 (174)
T 2r9u_A 32 PTDKQRLWLNN-NQITKLEPGV-FDHLVNLQQLYFNSN-KLT--AIPTG------VFDKLTQLTQLDLNDN-HLKSIPRG 99 (174)
T ss_dssp CTTCSEEECCS-SCCCCCCTTT-TTTCTTCCEEECCSS-CCC--CCCTT------TTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred CCCCcEEEeCC-CCccccCHHH-hcCCcCCCEEECCCC-CCC--ccChh------HhCCcchhhEEECCCC-ccceeCHH
Confidence 37888899988 6788764543 678888999998876 344 22211 1236888999998886 56666664
Q ss_pred CccccCCCCccEEEEcCCc
Q 020667 102 NLGILEFPSLKELWISGCP 120 (323)
Q Consensus 102 ~~~~~~l~~L~~L~l~~cp 120 (323)
. +..+++|++|+++++|
T Consensus 100 ~--~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 100 A--FDNLKSLTHIYLYNNP 116 (174)
T ss_dssp T--TTTCTTCSEEECCSSC
T ss_pred H--hccccCCCEEEeCCCC
Confidence 3 2468888888888874
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.25 E-value=3.2e-06 Score=67.66 Aligned_cols=57 Identities=23% Similarity=0.276 Sum_probs=25.5
Q ss_pred cccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCC-CCCCCCcceeEc
Q 020667 208 TFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEG-NSSTPKLHEVQW 267 (323)
Q Consensus 208 ~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~L~~L~l 267 (323)
.+++|+.|++++. +++.++... +..+++|++|++++ +.++.+|.. +..+++|+.|++
T Consensus 55 ~l~~L~~L~Ls~N-~l~~i~~~~-~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 55 HLVNLQQLYFNSN-KLTAIPTGV-FDKLTQLTQLDLND-NHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCcCCCEEECCCC-CCCccChhH-hCCcchhhEEECCC-CccceeCHHHhccccCCCEEEe
Confidence 3444444444442 444443321 23345555555544 234444443 344555555555
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.23 E-value=3.7e-06 Score=74.87 Aligned_cols=95 Identities=23% Similarity=0.214 Sum_probs=69.9
Q ss_pred CccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeeccc
Q 020667 140 HLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLN 219 (323)
Q Consensus 140 ~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~ 219 (323)
.+..+|. +..+++|++|+|++++.++.++ +..+.++++|+.|+++++. +..++ ...+..+++|+.|+|++
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~~-------~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKSG-LRFVA-------PDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSSC-CCEEC-------TTGGGSCSCCCEEECCS
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcC-hhHhccccCCCEEECCCCc-cceeC-------HHHhcCCcCCCEEeCCC
Confidence 5777887 8888899999998755677763 3457788999999998874 66665 23456788999999988
Q ss_pred ccccceecCCCccccCCcccEEeecCCC
Q 020667 220 LESLTSFCSGNCAFKFPSLERLVLDDCP 247 (323)
Q Consensus 220 c~~L~~l~~~~~~~~l~~L~~L~l~~c~ 247 (323)
.+|+.++... +..+ .|++|++.+++
T Consensus 90 -N~l~~~~~~~-~~~~-~L~~l~l~~N~ 114 (347)
T 2ifg_A 90 -NALESLSWKT-VQGL-SLQELVLSGNP 114 (347)
T ss_dssp -SCCSCCCSTT-TCSC-CCCEEECCSSC
T ss_pred -CccceeCHHH-cccC-CceEEEeeCCC
Confidence 4788887654 2233 38889887754
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.18 E-value=4.7e-06 Score=74.74 Aligned_cols=34 Identities=32% Similarity=0.336 Sum_probs=19.6
Q ss_pred ccCCcCEEecccccccccccccCccccCCCCccEEEEcCC
Q 020667 80 MFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGC 119 (323)
Q Consensus 80 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 119 (323)
.+|+|+.|.++++..+ .++. . ..++|++|.+..|
T Consensus 170 ~~P~L~~L~L~g~~~l-~l~~--~---~~~~L~~L~L~~~ 203 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNL-SIGK--K---PRPNLKSLEIISG 203 (362)
T ss_dssp TCTTCCEEEEECCBTC-BCCS--C---BCTTCSEEEEECS
T ss_pred cCCCCcEEEEeCCCCc-eecc--c---cCCCCcEEEEecC
Confidence 5677777777665222 1211 1 3667777777665
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.17 E-value=6e-06 Score=65.76 Aligned_cols=57 Identities=26% Similarity=0.308 Sum_probs=27.1
Q ss_pred cccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCC-CCCCCCcceeEc
Q 020667 208 TFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEG-NSSTPKLHEVQW 267 (323)
Q Consensus 208 ~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~L~~L~l 267 (323)
.+++|++|++++. +++.++... +..+++|++|+++++ .++.+|.. +..+++|++|++
T Consensus 52 ~l~~L~~L~Ls~N-~l~~l~~~~-f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 52 RLTQLTRLDLDNN-QLTVLPAGV-FDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TCTTCSEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CcccCCEEECCCC-CcCccChhh-ccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEEe
Confidence 4445555555543 444444322 234555555555543 34444442 344555555555
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.17 E-value=4e-06 Score=74.64 Aligned_cols=91 Identities=24% Similarity=0.262 Sum_probs=69.4
Q ss_pred ccccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccc
Q 020667 14 QVTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLE 93 (323)
Q Consensus 14 ~p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 93 (323)
.|. +. .+++|++|+|++++.++++.+. .++.+++|+.|+|+++ .++. ++. ..+..+++|++|+|+++
T Consensus 24 ip~-l~-~~~~L~~L~l~~~n~l~~~~~~-~~~~l~~L~~L~l~~N-~l~~--~~~------~~~~~l~~L~~L~l~~N- 90 (347)
T 2ifg_A 24 LHH-LP-GAENLTELYIENQQHLQHLELR-DLRGLGELRNLTIVKS-GLRF--VAP------DAFHFTPRLSRLNLSFN- 90 (347)
T ss_dssp TTT-SC-SCSCCSEEECCSCSSCCEECGG-GSCSCCCCSEEECCSS-CCCE--ECT------TGGGSCSCCCEEECCSS-
T ss_pred cCC-CC-CCCCeeEEEccCCCCCCCcChh-HhccccCCCEEECCCC-ccce--eCH------HHhcCCcCCCEEeCCCC-
Confidence 466 77 8999999999966889987444 4789999999999987 4652 222 12237999999999987
Q ss_pred ccccccccCccccCCCCccEEEEcCCc
Q 020667 94 NFTSFCTSNLGILEFPSLKELWISGCP 120 (323)
Q Consensus 94 ~l~~~~~~~~~~~~l~~L~~L~l~~cp 120 (323)
.+..++.... ...+|+.|++.+++
T Consensus 91 ~l~~~~~~~~---~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 91 ALESLSWKTV---QGLSLQELVLSGNP 114 (347)
T ss_dssp CCSCCCSTTT---CSCCCCEEECCSSC
T ss_pred ccceeCHHHc---ccCCceEEEeeCCC
Confidence 6788876643 33349999999874
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.04 E-value=0.00035 Score=63.23 Aligned_cols=36 Identities=17% Similarity=0.324 Sum_probs=27.4
Q ss_pred ccccCCcccEEeeecccccceeccchhHhcCCCccEEEEe
Q 020667 18 MSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIV 57 (323)
Q Consensus 18 ~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls 57 (323)
+. .+.+|+.+.|.+ +++.+ +...+.++++|+.+++.
T Consensus 67 F~-~c~~L~~i~lp~--~i~~I-~~~aF~~c~~L~~i~lp 102 (394)
T 4fs7_A 67 FQ-GCRKVTEIKIPS--TVREI-GEFAFENCSKLEIINIP 102 (394)
T ss_dssp TT-TCTTEEEEECCT--TCCEE-CTTTTTTCTTCCEECCC
T ss_pred hh-CCCCceEEEeCC--CccCc-chhHhhCCCCCcEEEeC
Confidence 44 788899999874 57775 55557888999999875
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.02 E-value=2.9e-06 Score=76.15 Aligned_cols=148 Identities=16% Similarity=0.105 Sum_probs=85.4
Q ss_pred CCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHH--hccccccEEE
Q 020667 107 EFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIA--KTLVRLEYME 184 (323)
Q Consensus 107 ~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l--~~l~~L~~L~ 184 (323)
.+|+|+.|.+++|.. + .+++ + ..++|++|+|..|. +..-. ...+ ..+|+|++|+
T Consensus 170 ~~P~L~~L~L~g~~~----------l----------~l~~-~-~~~~L~~L~L~~~~-l~~~~-l~~l~~~~lp~L~~L~ 225 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNN----------L----------SIGK-K-PRPNLKSLEIISGG-LPDSV-VEDILGSDLPNLEKLV 225 (362)
T ss_dssp TCTTCCEEEEECCBT----------C----------BCCS-C-BCTTCSEEEEECSB-CCHHH-HHHHHHSBCTTCCEEE
T ss_pred cCCCCcEEEEeCCCC----------c----------eecc-c-cCCCCcEEEEecCC-CChHH-HHHHHHccCCCCcEEE
Confidence 678999999887611 0 1222 2 36899999999775 33221 2223 3689999999
Q ss_pred EccCcc--cceeeeccCccc-ccccccccccCeeecccccccceecCCC-ccccCCcccEEeecCCCCCcc-----cCCC
Q 020667 185 IESCDR--ITEIVLVDDVAA-KDEVITFRELKELKLLNLESLTSFCSGN-CAFKFPSLERLVLDDCPSMKI-----FSEG 255 (323)
Q Consensus 185 l~~c~~--l~~i~~~~~~~~-~~~~~~~~~L~~L~l~~c~~L~~l~~~~-~~~~l~~L~~L~l~~c~~l~~-----lp~~ 255 (323)
++.+.. ...... .+.. ......+|+|+.|++.+|.--....... ....+|.|++|+++.| .++. ++.+
T Consensus 226 L~~~~~~~~~~~~~--~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~ 302 (362)
T 2ra8_A 226 LYVGVEDYGFDGDM--NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDH 302 (362)
T ss_dssp EECBCGGGTCCSCG--GGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTT
T ss_pred EeccccccccchhH--HHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhh
Confidence 864211 111000 0000 0111358999999999874321111000 0124789999999764 5653 6666
Q ss_pred CCCCCCcceeEccCccccccccchhhhce
Q 020667 256 NSSTPKLHEVQWPGEARWAWKDDLNTTIQ 284 (323)
Q Consensus 256 ~~~~~~L~~L~l~~~~~~~~~~~l~~~l~ 284 (323)
+..+++|++|++ ..+.+.+..-..+.
T Consensus 303 L~~l~~L~~L~L---~~n~i~d~~~~~l~ 328 (362)
T 2ra8_A 303 VDKIKHLKFINM---KYNYLSDEMKKELQ 328 (362)
T ss_dssp HHHHTTCSEEEC---CSBBCCHHHHHHHH
T ss_pred cccCCcceEEEC---CCCcCCHHHHHHHH
Confidence 567899999999 44445443333333
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.01 E-value=0.00011 Score=66.57 Aligned_cols=100 Identities=10% Similarity=0.048 Sum_probs=63.5
Q ss_pred CCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecC
Q 020667 149 TSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCS 228 (323)
Q Consensus 149 ~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~ 228 (323)
.....++.+...... ++ ...+..+.+|+.+.+.+ .+..+. ...+..+.+|+.+.|.+ +++.++.
T Consensus 273 ~~~~~l~~~~~~~~~----i~-~~~F~~~~~L~~i~l~~--~i~~I~-------~~aF~~c~~L~~i~lp~--~v~~I~~ 336 (394)
T 4fs7_A 273 YNCSGLKKVIYGSVI----VP-EKTFYGCSSLTEVKLLD--SVKFIG-------EEAFESCTSLVSIDLPY--LVEEIGK 336 (394)
T ss_dssp TTCTTCCEEEECSSE----EC-TTTTTTCTTCCEEEECT--TCCEEC-------TTTTTTCTTCCEECCCT--TCCEECT
T ss_pred ccccccceeccCcee----ec-ccccccccccccccccc--ccceec-------hhhhcCCCCCCEEEeCC--cccEEhH
Confidence 345566666554321 21 22456677888888764 355554 12335677888888864 5777766
Q ss_pred CCccccCCcccEEeecCCCCCcccCCC-CCCCCCcceeEc
Q 020667 229 GNCAFKFPSLERLVLDDCPSMKIFSEG-NSSTPKLHEVQW 267 (323)
Q Consensus 229 ~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~L~~L~l 267 (323)
.. +..+++|+.+.+... ++.++.. ...|++|+++.+
T Consensus 337 ~a-F~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 337 RS-FRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp TT-TTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEE
T ss_pred Hh-ccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEE
Confidence 54 566788888888542 6666654 457889999888
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.82 E-value=2.6e-06 Score=76.82 Aligned_cols=172 Identities=14% Similarity=0.104 Sum_probs=87.9
Q ss_pred CCcccEEeeecccccceeccchhHh-----cCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccc
Q 020667 22 IQNLMHLTLRSCMNLRYLFSSSIVS-----SFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFT 96 (323)
Q Consensus 22 l~~L~~L~L~~c~~l~~~~p~~~~~-----~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 96 (323)
+++|++|++++| .++...... +. ..++|+.|++++|. +.. .... .-...+++|++|++++| .++
T Consensus 71 ~~~L~~L~Ls~n-~l~~~~~~~-l~~~L~~~~~~L~~L~Ls~n~-l~~----~~~~---~l~~~L~~L~~L~Ls~n-~l~ 139 (372)
T 3un9_A 71 LSSLRQLNLAGV-RMTPVKCTV-VAAVLGSGRHALDEVNLASCQ-LDP----AGLR---TLLPVFLRARKLGLQLN-SLG 139 (372)
T ss_dssp HTTCCEEECTTS-CCCHHHHHH-HHHHHSSCSSCEEEEECTTCC-CCH----HHHH---HTHHHHHTEEEEECCSS-CCC
T ss_pred HhhCCEEEecCC-CCCHHHHHH-HHHHHhhCCCCceEEEecCCC-CCH----HHHH---HHHHHHHhccHhhcCCC-CCC
Confidence 467788888874 454321111 22 23678888888774 220 0000 00114567788888877 343
Q ss_pred cccccCc--cc-cCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecc---
Q 020667 97 SFCTSNL--GI-LEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLT--- 170 (323)
Q Consensus 97 ~~~~~~~--~~-~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~--- 170 (323)
....... .. ...++|++|++++|.-.-.. ...++..+...++|++|++++|. +++...
T Consensus 140 ~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~---------------~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L 203 (372)
T 3un9_A 140 PEACKDLRDLLLHDQCQITTLRLSNNPLTAAG---------------VAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELL 203 (372)
T ss_dssp HHHHHHHHHHHHSTTCCCCEEECCSSCCHHHH---------------HHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCccceeeCCCCCCChHH---------------HHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHH
Confidence 2211110 00 13567888888777311000 00111123356678888888875 443211
Q ss_pred hhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccce
Q 020667 171 FSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTS 225 (323)
Q Consensus 171 ~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~ 225 (323)
...+...++|+.|++++|. +++.... .....+...++|++|+++++ .++.
T Consensus 204 ~~~L~~~~~L~~L~Ls~N~-i~~~g~~---~l~~~L~~~~~L~~L~Ls~N-~i~~ 253 (372)
T 3un9_A 204 AAQLDRNRQLQELNVAYNG-AGDTAAL---ALARAAREHPSLELLHLYFN-ELSS 253 (372)
T ss_dssp HHHGGGCSCCCEEECCSSC-CCHHHHH---HHHHHHHHCSSCCEEECTTS-SCCH
T ss_pred HHHHhcCCCcCeEECCCCC-CCHHHHH---HHHHHHHhCCCCCEEeccCC-CCCH
Confidence 2234566788888888875 3322100 00011234578888888886 4544
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.59 E-value=7.6e-06 Score=73.78 Aligned_cols=92 Identities=17% Similarity=0.046 Sum_probs=55.7
Q ss_pred CCCCCCEEEeecCcCcceecc---hhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeeccccccccee
Q 020667 150 SFQNLTNLVVSCCKGLKIVLT---FSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSF 226 (323)
Q Consensus 150 ~l~~L~~L~l~~c~~l~~l~~---~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l 226 (323)
..++|++|++++|. +++... ...+...++|++|++++|. +++.... .-...+...++|++|++++| .++..
T Consensus 153 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~---~L~~~L~~~~~L~~L~Ls~N-~i~~~ 226 (372)
T 3un9_A 153 DQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLE---LLAAQLDRNRQLQELNVAYN-GAGDT 226 (372)
T ss_dssp TTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHH---HHHHHGGGCSCCCEEECCSS-CCCHH
T ss_pred cCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHH---HHHHHHhcCCCcCeEECCCC-CCCHH
Confidence 34689999999885 444211 2234667889999999876 4332100 00112245678999999886 55543
Q ss_pred cCCC---ccccCCcccEEeecCCC
Q 020667 227 CSGN---CAFKFPSLERLVLDDCP 247 (323)
Q Consensus 227 ~~~~---~~~~l~~L~~L~l~~c~ 247 (323)
.... .....++|++|++++|+
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHHHHHhCCCCCEEeccCCC
Confidence 2211 11246789999998875
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.45 E-value=0.028 Score=50.16 Aligned_cols=34 Identities=6% Similarity=0.224 Sum_probs=21.8
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEe
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIV 57 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls 57 (323)
...+|+.+.|.+ +++.+ +...+.++.+|+.++|.
T Consensus 44 ~~~~i~~v~ip~--~vt~I-g~~aF~~C~~L~~I~lp 77 (379)
T 4h09_A 44 DRDRISEVRVNS--GITSI-GEANFNSCYNMTKVTVA 77 (379)
T ss_dssp GGGGCSEEEECT--TEEEE-CTTTTTTCTTCCEEEEC
T ss_pred cccCCEEEEeCC--CccCh-HHHHhhCCCCCCEEEeC
Confidence 345677777763 56664 44446677777777764
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.43 E-value=0.0085 Score=53.98 Aligned_cols=229 Identities=14% Similarity=0.139 Sum_probs=115.2
Q ss_pred cccccCCcccEEeeecc--cccceeccchhHhcCCCccEEEE------------ecCCCCceEEeeccccccC-CCcccc
Q 020667 17 VMSCGIQNLMHLTLRSC--MNLRYLFSSSIVSSFVRLQRIEI------------VECPVLKELIVMDNQEERK-NNNVMF 81 (323)
Q Consensus 17 ~~~~~l~~L~~L~L~~c--~~l~~~~p~~~~~~l~~L~~L~l------------s~c~~l~~l~~~~~~~~~~-~~~~~l 81 (323)
.+. ++.+|+.+.+.+. ..++.+ ....+..+.+|+.+.+ .+|..++.+.++.....+. .....+
T Consensus 82 AF~-~C~~L~~i~~~~n~p~~l~~I-g~~aF~~c~~L~~i~~~~~~~~I~~~aF~~c~~L~~i~lp~~~~~I~~~~F~~c 159 (394)
T 4gt6_A 82 AFY-NCTSLKRVTIQDNKPSCVKKI-GRQAFMFCSELTDIPILDSVTEIDSEAFHHCEELDTVTIPEGVTSVADGMFSYC 159 (394)
T ss_dssp TTT-TCTTCCEEEEGGGCCCCCCEE-CTTTTTTCTTCCBCGGGTTCSEECTTTTTTCTTCCEEECCTTCCEECTTTTTTC
T ss_pred Hhh-CCccCceEeecCCCCCeeeEe-chhhchhcccceeeccCCccceehhhhhhhhcccccccccceeeeecccceecc
Confidence 345 7889999988652 235554 4444566666666543 3566666655554332111 122245
Q ss_pred CCcCEEecccccccccccccCccccCCCCccEEEEcCCch-----hhhhccCCcceee----------------------
Q 020667 82 PQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCPK-----FMERYNRTTNILT---------------------- 134 (323)
Q Consensus 82 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp~-----~~~~l~~L~~L~~---------------------- 134 (323)
.+|+.+.+.+ .+..+..... ...+|+.+.+...-. ....+..+.....
T Consensus 160 ~~L~~i~~~~--~~~~I~~~aF---~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (394)
T 4gt6_A 160 YSLHTVTLPD--SVTAIEERAF---TGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYA 234 (394)
T ss_dssp TTCCEEECCT--TCCEECTTTT---TTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEE
T ss_pred cccccccccc--eeeEeccccc---cccceeEEEECCcccccccchhhhccccceecccccccccccceeeccccccccc
Confidence 6677776643 3444444322 345677776643311 1111111111100
Q ss_pred ---ecCCCCcc--ccCC--------CCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcc
Q 020667 135 ---ERGCDHLV--DLVP--------SSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVA 201 (323)
Q Consensus 135 ---i~~~~~l~--~l~~--------~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~ 201 (323)
...+.... .+|. ...++.+|+.+.+.+. +..+. ...+.++++|+.+.+. ..+..++
T Consensus 235 ~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~--~~~I~-~~aF~~c~~L~~i~l~--~~i~~I~------ 303 (394)
T 4gt6_A 235 LIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDS--VVSIG-TGAFMNCPALQDIEFS--SRITELP------ 303 (394)
T ss_dssp EEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTT--CCEEC-TTTTTTCTTCCEEECC--TTCCEEC------
T ss_pred ccccccccccceEEcCCcceEcccceeeecccccEEecccc--cceec-CcccccccccccccCC--CcccccC------
Confidence 00000000 1111 1223455555555332 22222 2234556667766664 2344444
Q ss_pred cccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCC-CCCCCCcceeEccC
Q 020667 202 AKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEG-NSSTPKLHEVQWPG 269 (323)
Q Consensus 202 ~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~L~~L~l~~ 269 (323)
...+..+.+|+.+.|.+ +++.+.... +..+.+|+.+.|.+ .++.+... ...|++|+.+++.+
T Consensus 304 -~~aF~~c~~L~~i~lp~--~v~~I~~~a-F~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 304 -ESVFAGCISLKSIDIPE--GITQILDDA-FAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp -TTTTTTCTTCCEEECCT--TCCEECTTT-TTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred -ceeecCCCCcCEEEeCC--cccEehHhH-hhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECC
Confidence 12334567788888764 577776543 55678888888853 35556543 35788888888844
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.15 E-value=0.0088 Score=53.86 Aligned_cols=222 Identities=12% Similarity=0.157 Sum_probs=113.6
Q ss_pred cCC-cccEEeeecccccceeccchhHhcCCCccEEEEec----------------CCCCceEEeeccccccC-CCccccC
Q 020667 21 GIQ-NLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVE----------------CPVLKELIVMDNQEERK-NNNVMFP 82 (323)
Q Consensus 21 ~l~-~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~----------------c~~l~~l~~~~~~~~~~-~~~~~l~ 82 (323)
++. .|+.+.|.+ .++.+ ....+.++.+|+.+.+.+ |..++.+.++.....+. .....+.
T Consensus 61 ~~~~~L~sI~iP~--svt~I-g~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~~~~I~~~aF~~c~ 137 (394)
T 4gt6_A 61 NYKYVLTSVQIPD--TVTEI-GSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDSVTEIDSEAFHHCE 137 (394)
T ss_dssp TCCSCCCEEEECT--TCCEE-CTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTTCSEECTTTTTTCT
T ss_pred CCCCcCEEEEECC--CeeEE-hHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCccceehhhhhhhhc
Confidence 453 599999985 58876 555588999999998853 34444333332221111 1223456
Q ss_pred CcCEEecccccccccccccCccccCCCCccEEEEcCCchhhh----hccCCcceeeecCCCCccccC-CCCCCCCCCCEE
Q 020667 83 QLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCPKFME----RYNRTTNILTERGCDHLVDLV-PSSTSFQNLTNL 157 (323)
Q Consensus 83 ~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp~~~~----~l~~L~~L~~i~~~~~l~~l~-~~~~~l~~L~~L 157 (323)
+|+.+.+.. .+..+.... +..+.+|+.+.+.+.-..++ ....++.+. +.. .+..+. .......+++..
T Consensus 138 ~L~~i~lp~--~~~~I~~~~--F~~c~~L~~i~~~~~~~~I~~~aF~~~~l~~i~-ip~--~~~~i~~~af~~c~~l~~~ 210 (394)
T 4gt6_A 138 ELDTVTIPE--GVTSVADGM--FSYCYSLHTVTLPDSVTAIEERAFTGTALTQIH-IPA--KVTRIGTNAFSECFALSTI 210 (394)
T ss_dssp TCCEEECCT--TCCEECTTT--TTTCTTCCEEECCTTCCEECTTTTTTCCCSEEE-ECT--TCCEECTTTTTTCTTCCEE
T ss_pred ccccccccc--eeeeecccc--eecccccccccccceeeEeccccccccceeEEE-ECC--cccccccchhhhcccccee
Confidence 677777643 234444333 35788899998865421111 112333331 100 000000 001122222222
Q ss_pred Eeec--------------------------Cc---------CcceecchhHHhccccccEEEEccCcccceeeeccCccc
Q 020667 158 VVSC--------------------------CK---------GLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAA 202 (323)
Q Consensus 158 ~l~~--------------------------c~---------~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~ 202 (323)
.... +. .++.+. ...+.++..|+.+.+.+. +..+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~-~~aF~~c~~L~~i~lp~~--~~~I~------- 280 (394)
T 4gt6_A 211 TSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIE-THAFDSCAYLASVKMPDS--VVSIG------- 280 (394)
T ss_dssp EECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEEC-TTTTTTCSSCCEEECCTT--CCEEC-------
T ss_pred cccccccccccceeecccccccccccccccccccceEEcCCcceEcc-cceeeecccccEEecccc--cceec-------
Confidence 2111 00 111111 112334455555554321 22222
Q ss_pred ccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCC-CCCCCCcceeEc
Q 020667 203 KDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEG-NSSTPKLHEVQW 267 (323)
Q Consensus 203 ~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~L~~L~l 267 (323)
...+..+++|+.+.+.. .++.++... +..+++|+.+.|.+ .++.+... ...|.+|+++.+
T Consensus 281 ~~aF~~c~~L~~i~l~~--~i~~I~~~a-F~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 281 TGAFMNCPALQDIEFSS--RITELPESV-FAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAI 341 (394)
T ss_dssp TTTTTTCTTCCEEECCT--TCCEECTTT-TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEE
T ss_pred CcccccccccccccCCC--cccccCcee-ecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEE
Confidence 12234567788887754 677776654 56788999999864 46667654 457899999998
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.00 E-value=0.0054 Score=52.25 Aligned_cols=13 Identities=23% Similarity=0.299 Sum_probs=6.9
Q ss_pred ccCCcCEEecccc
Q 020667 80 MFPQLQYLKMFNL 92 (323)
Q Consensus 80 ~l~~L~~L~l~~~ 92 (323)
.+++|+.|+|+++
T Consensus 194 ~l~~L~~L~Ls~N 206 (267)
T 3rw6_A 194 KAPNLKILNLSGN 206 (267)
T ss_dssp HSTTCCEEECTTS
T ss_pred hCCCCCEEECCCC
Confidence 4555555555544
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.86 E-value=0.0014 Score=52.55 Aligned_cols=90 Identities=14% Similarity=0.077 Sum_probs=50.4
Q ss_pred cCCcccEEeeecccccceeccc---hhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSS---SIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTS 97 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~---~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 97 (323)
..++|++|+|++|..+....-. ..+...++|++|+|++|. +.. .........+...++|++|+++++. ++.
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~----~g~~~l~~~L~~n~~L~~L~L~~N~-i~~ 107 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SND----PVAFALAEMLKVNNTLKSLNVESNF-ISG 107 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCH----HHHHHHHHHHHHCSSCCEEECCSSC-CCH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CCh----HHHHHHHHHHHhCCCcCEEECcCCc-CCH
Confidence 5788889999885355431111 113456888888888874 220 0001111222245678888888773 332
Q ss_pred -----ccccCccccCCCCccEEEE--cCC
Q 020667 98 -----FCTSNLGILEFPSLKELWI--SGC 119 (323)
Q Consensus 98 -----~~~~~~~~~~l~~L~~L~l--~~c 119 (323)
+... ....++|++|++ ++|
T Consensus 108 ~g~~~l~~~---L~~n~~L~~L~L~~~~N 133 (185)
T 1io0_A 108 SGILALVEA---LQSNTSLIELRIDNQSQ 133 (185)
T ss_dssp HHHHHHHHG---GGGCSSCCEEECCCCSS
T ss_pred HHHHHHHHH---HHhCCCceEEEecCCCC
Confidence 1222 225667888888 555
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.70 E-value=0.011 Score=47.15 Aligned_cols=44 Identities=2% Similarity=-0.056 Sum_probs=21.9
Q ss_pred HhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccc
Q 020667 45 VSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNL 92 (323)
Q Consensus 45 ~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 92 (323)
+...++|++|++++|..+.. .........+...++|++|++++|
T Consensus 32 l~~~~~L~~L~L~~n~~i~~----~g~~~l~~~L~~~~~L~~L~Ls~n 75 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPV----PTLKACAEALKTNTYVKKFSIVGT 75 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCH----HHHHHHHHHHTTCCSCCEEECTTS
T ss_pred HhcCCCCCEEEecCCCCCCH----HHHHHHHHHHHhCCCcCEEECcCC
Confidence 44567777777776633431 000111111224456677777665
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.64 E-value=0.0054 Score=52.23 Aligned_cols=84 Identities=20% Similarity=0.167 Sum_probs=40.8
Q ss_pred hccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCC
Q 020667 175 KTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSE 254 (323)
Q Consensus 175 ~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 254 (323)
.++++|+.|+++++. +..+..- ...+..+++|+.|+|++ .+++.+..-.....+ +|++|++.+++.-+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l-----~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDM-----SSIVQKAPNLKILNLSG-NELKSERELDKIKGL-KLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGG-----TTHHHHSTTCCEEECTT-SCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSS
T ss_pred hhCCCCCEEECCCCC-CCCCccc-----hhHHhhCCCCCEEECCC-CccCCchhhhhcccC-CcceEEccCCcCccccCc
Confidence 346666666666654 3332200 01223566667776666 345544211111112 677777776665444442
Q ss_pred -------CCCCCCCcceeE
Q 020667 255 -------GNSSTPKLHEVQ 266 (323)
Q Consensus 255 -------~~~~~~~L~~L~ 266 (323)
.+..+|+|+.|+
T Consensus 239 ~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 239 QSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHHHCTTCCEES
T ss_pred chhHHHHHHHHCcccCeEC
Confidence 123456666653
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.20 E-value=1.1 Score=39.66 Aligned_cols=200 Identities=8% Similarity=0.061 Sum_probs=92.9
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccc-----cccCCCccccCCcCEEeccccccccc
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQ-----EERKNNNVMFPQLQYLKMFNLENFTS 97 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~-----~~~~~~~~~l~~L~~L~l~~~~~l~~ 97 (323)
.+|+.+.+.. .++.+ ....+..+.+++...+....... ...... ............+....+... ...
T Consensus 135 ~~l~~~~~~~--~v~~i-~~~~f~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 207 (379)
T 4h09_A 135 SSVKRIVIPK--SVTTI-KDGIGYKAENLEKIEVSSNNKNY--VAENYVLYNKNKTILESYPAAKTGTEFTIPST--VKT 207 (379)
T ss_dssp CCCCEEEECT--TCCEE-CSCTTTTCTTCCEEEECTTCSSE--EEETTEEEETTSSEEEECCTTCCCSEEECCTT--CCE
T ss_pred ceeeeeeccc--eeecc-ccchhccccccccccccccccee--ecccceecccccceeccccccccccccccccc--eeE
Confidence 3566666653 45554 33346788889988887554332 111000 000001112334444444321 222
Q ss_pred ccccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhcc
Q 020667 98 FCTSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTL 177 (323)
Q Consensus 98 ~~~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l 177 (323)
+.... ...+.+|+.+.+... +..+ .. ....+..+|+.+.+... ++.+. ...+.++
T Consensus 208 i~~~~--f~~~~~l~~i~~~~~---------~~~i---~~--------~~f~~~~~L~~i~lp~~--v~~I~-~~aF~~~ 262 (379)
T 4h09_A 208 VTAYG--FSYGKNLKKITITSG---------VTTL---GD--------GAFYGMKALDEIAIPKN--VTSIG-SFLLQNC 262 (379)
T ss_dssp ECTTT--TTTCSSCSEEECCTT---------CCEE---CT--------TTTTTCSSCCEEEECTT--CCEEC-TTTTTTC
T ss_pred Eeecc--cccccccceeeeccc---------eeEE---cc--------ccccCCccceEEEcCCC--ccEeC-cccccee
Confidence 22111 235667777766432 1111 00 11233455555555432 34332 1234455
Q ss_pred ccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCC-C
Q 020667 178 VRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEG-N 256 (323)
Q Consensus 178 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~ 256 (323)
.+|+.+.+.. .+..+. ...+..+++|+.+.+.+ ..++.++... +..+++|+.+.+.+ .++.+... .
T Consensus 263 ~~l~~i~l~~--~i~~i~-------~~aF~~c~~L~~i~l~~-~~i~~I~~~a-F~~c~~L~~i~lp~--~l~~I~~~aF 329 (379)
T 4h09_A 263 TALKTLNFYA--KVKTVP-------YLLCSGCSNLTKVVMDN-SAIETLEPRV-FMDCVKLSSVTLPT--ALKTIQVYAF 329 (379)
T ss_dssp TTCCEEEECC--CCSEEC-------TTTTTTCTTCCEEEECC-TTCCEECTTT-TTTCTTCCEEECCT--TCCEECTTTT
T ss_pred ehhccccccc--cceecc-------ccccccccccccccccc-cccceehhhh-hcCCCCCCEEEcCc--cccEEHHHHh
Confidence 5666666542 233333 12223456666666654 2455555443 44566666666643 35555443 3
Q ss_pred CCCCCcceeEc
Q 020667 257 SSTPKLHEVQW 267 (323)
Q Consensus 257 ~~~~~L~~L~l 267 (323)
..|++|+++.+
T Consensus 330 ~~C~~L~~i~i 340 (379)
T 4h09_A 330 KNCKALSTISY 340 (379)
T ss_dssp TTCTTCCCCCC
T ss_pred hCCCCCCEEEE
Confidence 45666666666
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.24 E-value=0.1 Score=38.98 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=19.3
Q ss_pred cccEEeeecccccceeccchhHhcCCCccEEEEecC
Q 020667 24 NLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVEC 59 (323)
Q Consensus 24 ~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c 59 (323)
+|++|+|++ +.++.+ |..++..+++|+.|+|+++
T Consensus 32 ~l~~L~Ls~-N~l~~l-~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTG-NNLTAL-PPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTT-SCCSSC-CTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCC-CcCCcc-ChhhhhhccccCEEEecCC
Confidence 566666665 555553 4444555666666666544
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=79.39 E-value=3.1 Score=30.63 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=15.3
Q ss_pred cccEEeecCCCCCcccCCCC-CCCCCcceeEc
Q 020667 237 SLERLVLDDCPSMKIFSEGN-SSTPKLHEVQW 267 (323)
Q Consensus 237 ~L~~L~l~~c~~l~~lp~~~-~~~~~L~~L~l 267 (323)
+|++|++++ +.++.+|.+. ..+++|+.|++
T Consensus 32 ~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L 62 (130)
T 3rfe_A 32 DTTELVLTG-NNLTALPPGLLDALPALRTAHL 62 (130)
T ss_dssp TCSEEECTT-SCCSSCCTTTGGGCTTCCEEEC
T ss_pred CCCEEECCC-CcCCccChhhhhhccccCEEEe
Confidence 455555544 3455555443 23455555555
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=43.42 E-value=8.9 Score=30.56 Aligned_cols=10 Identities=0% Similarity=0.252 Sum_probs=4.1
Q ss_pred CccEEEEcCC
Q 020667 110 SLKELWISGC 119 (323)
Q Consensus 110 ~L~~L~l~~c 119 (323)
.|+.|++++|
T Consensus 71 ~L~~L~L~~n 80 (197)
T 1pgv_A 71 HIEKFSLANT 80 (197)
T ss_dssp CCCEEECTTS
T ss_pred CcCEEEccCC
Confidence 3444444433
No 164
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=42.13 E-value=35 Score=23.59 Aligned_cols=78 Identities=10% Similarity=0.053 Sum_probs=32.6
Q ss_pred ccCCcccEEeecCCCCCcccCCC-CCCCCCcceeEccCcccccc-cc--chhhhceeeeccceeeeeeecCCCcccCCCc
Q 020667 233 FKFPSLERLVLDDCPSMKIFSEG-NSSTPKLHEVQWPGEARWAW-KD--DLNTTIQKVIFPAMVAGVWSDDGGLEEDGDT 308 (323)
Q Consensus 233 ~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~L~~L~l~~~~~~~~-~~--~l~~~l~~l~~~~~~~~~~~~~~~~e~~~~~ 308 (323)
..+++|+.+.|-. .++.+-.. ...|.+|+.+.+.+..-... .+ ........+.++......-+.+..|+.-...
T Consensus 17 ~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~~~P~~~~~~~~~~~~~~~~i~VP~~Sv~~Yk~a~~Wk~fa~~ 94 (100)
T 2lz0_A 17 AGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTGEDPSAYSAGDGLRDGADFLICVPEEALDRYRRDYFWQTYAAW 94 (100)
T ss_dssp TTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECCSCGGGCCCTTTTTTTCCCCEEECHHHHHHHHTSTTGGGGTTT
T ss_pred cCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcCCCCCeEeccccccccccccccCCHHHHHHHHhccCchhhHHh
Confidence 3455555555532 23333322 33566666666644211100 00 0011122344544444444455556655554
Q ss_pred cchh
Q 020667 309 EKED 312 (323)
Q Consensus 309 ~~~~ 312 (323)
.+.+
T Consensus 95 I~pi 98 (100)
T 2lz0_A 95 IQPM 98 (100)
T ss_dssp EEEC
T ss_pred eeeC
Confidence 4443
Done!