Query 020668
Match_columns 323
No_of_seqs 351 out of 2560
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 04:12:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020668.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020668hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09563 rbgA GTPase YlqF; Rev 100.0 3.9E-42 8.6E-47 322.4 23.3 217 99-315 3-219 (287)
2 TIGR03596 GTPase_YlqF ribosome 100.0 4.4E-42 9.5E-47 320.4 23.1 216 100-315 1-216 (276)
3 COG1161 Predicted GTPases [Gen 100.0 3.9E-38 8.4E-43 299.5 20.2 215 97-311 11-227 (322)
4 KOG2485 Conserved ATP/GTP bind 100.0 3.1E-36 6.6E-41 277.3 18.8 223 92-317 18-251 (335)
5 cd01856 YlqF YlqF. Proteins o 100.0 5.4E-33 1.2E-37 241.3 19.6 171 102-273 1-171 (171)
6 KOG2484 GTPase [General functi 100.0 5.2E-33 1.1E-37 262.5 15.6 214 95-309 121-343 (435)
7 cd01858 NGP_1 NGP-1. Autoanti 100.0 2.2E-30 4.8E-35 221.7 16.4 151 114-272 2-157 (157)
8 KOG1424 Predicted GTP-binding 100.0 3.5E-30 7.6E-35 249.7 13.8 214 66-279 113-376 (562)
9 COG1160 Predicted GTPases [Gen 100.0 3.9E-30 8.4E-35 248.3 8.3 194 107-309 70-270 (444)
10 cd01857 HSR1_MMR1 HSR1/MMR1. 100.0 6.5E-28 1.4E-32 203.0 16.7 136 111-275 2-141 (141)
11 cd01849 YlqF_related_GTPase Yl 100.0 9E-28 2E-32 205.2 17.2 151 122-272 1-155 (155)
12 cd04178 Nucleostemin_like Nucl 100.0 1.8E-27 4E-32 207.3 16.1 143 122-272 1-172 (172)
13 KOG2423 Nucleolar GTPase [Gene 99.9 3.1E-27 6.7E-32 222.7 12.8 167 103-277 196-367 (572)
14 cd01859 MJ1464 MJ1464. This f 99.9 1.1E-25 2.3E-30 192.1 17.9 151 112-272 3-156 (156)
15 cd01855 YqeH YqeH. YqeH is an 99.9 4.8E-26 1E-30 200.6 14.5 150 110-272 24-190 (190)
16 PRK13796 GTPase YqeH; Provisio 99.9 3.7E-26 8.1E-31 221.0 11.6 190 113-316 61-268 (365)
17 TIGR03597 GTPase_YqeH ribosome 99.9 1.9E-24 4.2E-29 208.7 16.4 154 108-275 51-217 (360)
18 PRK12289 GTPase RsgA; Reviewed 99.9 1.4E-24 2.9E-29 208.5 15.2 142 117-277 86-239 (352)
19 TIGR00157 ribosome small subun 99.9 1.2E-23 2.5E-28 193.2 12.8 143 117-279 33-188 (245)
20 TIGR03594 GTPase_EngA ribosome 99.9 9E-23 1.9E-27 201.0 11.8 170 100-275 51-233 (429)
21 PRK12288 GTPase RsgA; Reviewed 99.9 6E-22 1.3E-26 190.1 15.7 142 117-278 117-273 (347)
22 PRK00093 GTP-binding protein D 99.9 2.4E-22 5.1E-27 198.5 11.6 169 100-275 53-234 (435)
23 COG2895 CysN GTPases - Sulfate 99.9 2E-22 4.4E-27 188.4 8.0 130 61-191 49-192 (431)
24 PRK00098 GTPase RsgA; Reviewed 99.9 1.2E-21 2.5E-26 184.9 13.1 141 117-276 77-230 (298)
25 cd01854 YjeQ_engC YjeQ/EngC. 99.9 3.2E-21 6.8E-26 181.0 13.4 142 116-276 74-227 (287)
26 PRK03003 GTP-binding protein D 99.9 6.3E-21 1.4E-25 190.5 15.4 169 100-274 90-271 (472)
27 PRK09518 bifunctional cytidyla 99.8 4.8E-20 1E-24 192.4 17.0 171 100-274 327-510 (712)
28 COG1162 Predicted GTPases [Gen 99.8 1.4E-19 3E-24 168.3 13.5 141 118-277 77-231 (301)
29 PRK01889 GTPase RsgA; Reviewed 99.7 1.8E-17 3.9E-22 160.0 11.0 144 118-281 110-266 (356)
30 PF03193 DUF258: Protein of un 99.6 3.4E-16 7.5E-21 134.3 7.9 95 166-278 2-103 (161)
31 COG0486 ThdF Predicted GTPase 99.5 4.6E-15 1E-19 144.4 2.6 61 214-274 214-277 (454)
32 COG1084 Predicted GTPase [Gene 99.5 1.3E-13 2.8E-18 128.9 8.7 71 214-285 165-238 (346)
33 PF02421 FeoB_N: Ferrous iron 99.5 9.5E-14 2.1E-18 118.9 7.2 63 218-281 1-66 (156)
34 COG1159 Era GTPase [General fu 99.4 2.2E-13 4.7E-18 126.1 6.7 58 219-276 8-68 (298)
35 COG1160 Predicted GTPases [Gen 99.4 6E-14 1.3E-18 136.3 2.0 58 218-275 4-64 (444)
36 KOG1191 Mitochondrial GTPase [ 99.4 5.9E-14 1.3E-18 136.7 1.6 60 215-274 266-328 (531)
37 COG2262 HflX GTPases [General 99.4 4E-14 8.7E-19 135.8 -1.5 180 71-275 50-253 (411)
38 PF01926 MMR_HSR1: 50S ribosom 99.4 1.2E-12 2.7E-17 105.8 6.2 58 219-276 1-61 (116)
39 COG0218 Predicted GTPase [Gene 99.3 1.6E-12 3.4E-17 114.5 6.3 61 217-277 24-85 (200)
40 PF00009 GTP_EFTU: Elongation 99.3 1.2E-11 2.5E-16 108.7 11.9 128 73-201 43-186 (188)
41 KOG1423 Ras-like GTPase ERA [C 99.2 2.8E-12 6.1E-17 118.8 1.9 93 215-309 70-165 (379)
42 COG5256 TEF1 Translation elong 99.2 2.9E-11 6.3E-16 116.3 8.9 128 65-193 52-202 (428)
43 PRK11058 GTPase HflX; Provisio 99.2 1.3E-11 2.8E-16 121.9 5.1 56 218-274 198-257 (426)
44 cd01852 AIG1 AIG1 (avrRpt2-ind 99.2 4.2E-11 9.1E-16 106.0 7.3 58 219-276 2-63 (196)
45 TIGR00436 era GTP-binding prot 99.2 3.4E-11 7.3E-16 112.0 5.7 57 219-275 2-61 (270)
46 TIGR03156 GTP_HflX GTP-binding 99.2 1.2E-10 2.5E-15 112.5 9.2 180 70-274 46-249 (351)
47 PRK05124 cysN sulfate adenylyl 99.1 3.5E-10 7.5E-15 113.3 12.3 128 66-194 75-217 (474)
48 TIGR02034 CysN sulfate adenyly 99.1 4.8E-10 1E-14 110.3 13.1 126 66-192 48-187 (406)
49 cd01853 Toc34_like Toc34-like 99.1 7.3E-11 1.6E-15 108.7 6.9 62 214-275 28-92 (249)
50 PLN00043 elongation factor 1-a 99.1 2.1E-10 4.5E-15 114.1 10.6 126 66-192 53-203 (447)
51 cd01884 EF_Tu EF-Tu subfamily. 99.1 7.2E-10 1.6E-14 98.5 12.2 119 72-191 39-172 (195)
52 cd04166 CysN_ATPS CysN_ATPS su 99.1 4.5E-10 9.8E-15 100.4 11.0 133 60-193 39-185 (208)
53 PTZ00141 elongation factor 1- 99.1 4.9E-10 1.1E-14 111.4 10.4 128 64-192 51-203 (446)
54 cd04165 GTPBP1_like GTPBP1-lik 99.1 7E-10 1.5E-14 100.7 10.4 101 99-200 87-221 (224)
55 PRK12298 obgE GTPase CgtA; Rev 99.1 1.3E-10 2.8E-15 113.6 5.7 56 219-275 161-220 (390)
56 PRK05291 trmE tRNA modificatio 99.1 3E-10 6.4E-15 113.1 7.7 59 216-274 214-275 (449)
57 TIGR00991 3a0901s02IAP34 GTP-b 99.0 4.9E-10 1.1E-14 105.7 8.0 60 216-275 37-99 (313)
58 PRK05506 bifunctional sulfate 99.0 1.7E-09 3.8E-14 112.0 12.8 127 65-192 71-211 (632)
59 cd01889 SelB_euk SelB subfamil 99.0 2.8E-09 6.2E-14 93.7 12.4 126 74-200 30-184 (192)
60 PRK00454 engB GTP-binding prot 99.0 5.2E-10 1.1E-14 97.9 7.4 59 216-274 23-82 (196)
61 TIGR03598 GTPase_YsxC ribosome 99.0 4.1E-10 8.9E-15 98.0 6.7 58 217-274 18-76 (179)
62 PRK12317 elongation factor 1-a 99.0 1.2E-09 2.6E-14 108.0 10.7 126 67-193 53-196 (425)
63 TIGR00483 EF-1_alpha translati 99.0 1E-09 2.3E-14 108.5 10.3 128 64-192 51-197 (426)
64 PRK09601 GTP-binding protein Y 99.0 3E-10 6.4E-15 109.5 6.1 57 218-275 3-79 (364)
65 PTZ00258 GTP-binding protein; 99.0 3.3E-10 7.2E-15 110.3 6.4 59 216-275 20-98 (390)
66 cd01900 YchF YchF subfamily. 99.0 2.6E-10 5.6E-15 106.3 5.5 55 220-275 1-75 (274)
67 TIGR00450 mnmE_trmE_thdF tRNA 99.0 5.1E-10 1.1E-14 111.1 7.6 60 215-274 201-263 (442)
68 PTZ00327 eukaryotic translatio 99.0 2.2E-09 4.7E-14 107.0 11.9 100 100-200 121-231 (460)
69 PRK10512 selenocysteinyl-tRNA- 99.0 1.6E-09 3.5E-14 111.6 11.2 128 74-202 26-166 (614)
70 cd04171 SelB SelB subfamily. 99.0 3.3E-09 7.2E-14 89.4 10.8 99 100-199 55-163 (164)
71 COG0218 Predicted GTPase [Gene 99.0 7.6E-10 1.7E-14 97.6 7.0 107 71-201 81-196 (200)
72 COG1159 Era GTPase [General fu 99.0 3.3E-09 7.1E-14 98.5 11.4 108 102-209 60-179 (298)
73 TIGR00475 selB selenocysteine- 99.0 3.3E-09 7.1E-14 108.8 12.4 127 77-204 29-168 (581)
74 cd01883 EF1_alpha Eukaryotic e 99.0 2.2E-09 4.8E-14 96.8 9.8 124 67-191 46-194 (219)
75 PRK04213 GTP-binding protein; 99.0 8.9E-10 1.9E-14 97.3 6.1 54 217-272 9-62 (201)
76 PRK15494 era GTPase Era; Provi 99.0 1.5E-09 3.3E-14 104.4 7.9 58 217-274 52-112 (339)
77 KOG1249 Predicted GTPases [Gen 99.0 5.1E-10 1.1E-14 110.4 4.7 205 110-314 100-417 (572)
78 COG1163 DRG Predicted GTPase [ 99.0 1.4E-09 3.1E-14 101.8 7.4 83 192-275 30-123 (365)
79 PRK00089 era GTPase Era; Revie 99.0 9.5E-10 2.1E-14 103.2 6.3 57 219-275 7-66 (292)
80 TIGR03594 GTPase_EngA ribosome 99.0 6.7E-10 1.5E-14 109.6 5.5 55 219-273 1-58 (429)
81 cd01888 eIF2_gamma eIF2-gamma 98.9 5.4E-09 1.2E-13 93.1 10.6 100 100-200 87-197 (203)
82 PRK15467 ethanolamine utilizat 98.9 8.2E-09 1.8E-13 88.4 11.1 103 100-203 41-148 (158)
83 PRK12736 elongation factor Tu; 98.9 8E-09 1.7E-13 101.3 12.2 128 72-200 49-199 (394)
84 TIGR03680 eif2g_arch translati 98.9 6.9E-09 1.5E-13 102.1 11.3 101 100-201 84-195 (406)
85 CHL00071 tufA elongation facto 98.9 8.3E-09 1.8E-13 101.6 11.9 117 72-189 49-180 (409)
86 PLN03127 Elongation factor Tu; 98.9 8.6E-09 1.9E-13 102.6 12.0 128 72-200 98-250 (447)
87 cd00881 GTP_translation_factor 98.9 1.7E-08 3.6E-13 87.1 12.4 128 72-200 36-185 (189)
88 TIGR00485 EF-Tu translation el 98.9 1.6E-08 3.5E-13 99.1 13.7 116 72-188 49-179 (394)
89 cd01890 LepA LepA subfamily. 98.9 1.3E-08 2.9E-13 87.5 11.6 98 100-199 71-174 (179)
90 PF04548 AIG1: AIG1 family; I 98.9 1.7E-09 3.7E-14 97.2 6.1 63 218-280 1-67 (212)
91 TIGR00993 3a0901s04IAP86 chlor 98.9 3.5E-09 7.7E-14 107.8 8.8 64 214-277 115-181 (763)
92 KOG1490 GTP-binding protein CR 98.9 7.8E-10 1.7E-14 108.4 3.7 73 215-288 166-241 (620)
93 PRK12299 obgE GTPase CgtA; Rev 98.9 1.7E-09 3.6E-14 103.9 5.9 56 218-274 159-218 (335)
94 cd01898 Obg Obg subfamily. Th 98.9 1.7E-09 3.7E-14 92.1 5.0 54 219-273 2-59 (170)
95 PRK12297 obgE GTPase CgtA; Rev 98.9 2.3E-09 5E-14 105.7 6.2 55 219-274 160-218 (424)
96 TIGR00436 era GTP-binding prot 98.9 2E-08 4.3E-13 93.5 12.0 103 101-204 53-166 (270)
97 PRK12296 obgE GTPase CgtA; Rev 98.9 1.9E-09 4.1E-14 107.9 5.5 57 217-274 159-218 (500)
98 cd04164 trmE TrmE (MnmE, ThdF, 98.9 3.1E-09 6.7E-14 88.7 5.9 58 218-275 2-62 (157)
99 PRK03003 GTP-binding protein D 98.9 3E-09 6.5E-14 106.6 6.9 57 217-273 38-97 (472)
100 cd01894 EngA1 EngA1 subfamily. 98.9 1.8E-08 3.8E-13 84.2 10.1 97 100-199 49-155 (157)
101 PF10662 PduV-EutP: Ethanolami 98.8 2.4E-08 5.1E-13 84.2 10.3 98 100-198 40-142 (143)
102 cd01895 EngA2 EngA2 subfamily. 98.8 4E-09 8.7E-14 89.2 5.7 58 217-274 2-62 (174)
103 cd01897 NOG NOG1 is a nucleola 98.8 4.5E-09 9.8E-14 89.5 5.8 54 219-273 2-58 (168)
104 cd01894 EngA1 EngA1 subfamily. 98.8 3.3E-09 7.2E-14 88.6 4.8 54 221-274 1-57 (157)
105 PRK04000 translation initiatio 98.8 2E-08 4.3E-13 99.0 10.7 101 100-201 89-200 (411)
106 TIGR02528 EutP ethanolamine ut 98.8 3.5E-08 7.7E-13 81.9 10.7 97 100-197 39-140 (142)
107 PLN03126 Elongation factor Tu; 98.8 3.4E-08 7.4E-13 99.0 12.4 116 72-188 118-248 (478)
108 PRK00049 elongation factor Tu; 98.8 3.3E-08 7.3E-13 97.0 11.8 128 72-200 49-201 (396)
109 cd01879 FeoB Ferrous iron tran 98.8 8.1E-09 1.8E-13 86.6 6.2 52 222-274 1-55 (158)
110 PRK12735 elongation factor Tu; 98.8 3.4E-08 7.4E-13 96.9 11.6 128 72-200 49-201 (396)
111 cd01878 HflX HflX subfamily. 98.8 1E-08 2.2E-13 90.7 6.8 57 217-274 41-101 (204)
112 cd04163 Era Era subfamily. Er 98.8 1.1E-08 2.4E-13 85.6 6.5 58 217-274 3-63 (168)
113 COG3596 Predicted GTPase [Gene 98.8 1E-09 2.3E-14 100.8 0.2 66 216-282 38-107 (296)
114 TIGR02729 Obg_CgtA Obg family 98.8 6.2E-09 1.4E-13 99.7 5.6 56 218-274 158-217 (329)
115 COG0370 FeoB Fe2+ transport sy 98.8 1.1E-08 2.4E-13 104.0 7.7 57 218-275 4-63 (653)
116 cd01876 YihA_EngB The YihA (En 98.8 8.7E-09 1.9E-13 86.5 5.5 55 220-274 2-57 (170)
117 PRK09602 translation-associate 98.8 8.3E-09 1.8E-13 101.1 6.1 56 218-274 2-84 (396)
118 cd01881 Obg_like The Obg-like 98.8 6.6E-09 1.4E-13 88.8 4.4 51 222-273 1-55 (176)
119 PRK09518 bifunctional cytidyla 98.8 1E-08 2.2E-13 107.7 6.4 57 218-274 276-335 (712)
120 COG3276 SelB Selenocysteine-sp 98.7 7.8E-08 1.7E-12 93.5 11.7 131 71-202 23-162 (447)
121 cd01891 TypA_BipA TypA (tyrosi 98.7 6.7E-08 1.4E-12 85.1 10.3 117 78-195 45-175 (194)
122 PRK00089 era GTPase Era; Revie 98.7 1.2E-07 2.6E-12 89.0 11.8 93 111-203 75-172 (292)
123 PRK09554 feoB ferrous iron tra 98.7 1.9E-08 4.2E-13 106.0 6.9 57 218-275 4-63 (772)
124 KOG0410 Predicted GTP binding 98.7 2.9E-09 6.2E-14 99.7 0.5 56 218-274 179-238 (410)
125 KOG0458 Elongation factor 1 al 98.7 2.3E-08 4.9E-13 99.8 6.6 124 69-193 226-373 (603)
126 TIGR01393 lepA GTP-binding pro 98.7 1.2E-07 2.6E-12 97.6 12.0 131 70-202 37-180 (595)
127 PRK05433 GTP-binding protein L 98.7 1.5E-07 3.2E-12 97.0 12.6 130 71-202 42-184 (600)
128 PRK09866 hypothetical protein; 98.7 9.3E-08 2E-12 97.3 10.8 100 100-199 234-350 (741)
129 PRK15494 era GTPase Era; Provi 98.7 9.6E-08 2.1E-12 91.9 10.4 105 100-205 104-219 (339)
130 cd01896 DRG The developmentall 98.7 2.5E-08 5.5E-13 91.0 6.1 55 219-274 2-59 (233)
131 TIGR00231 small_GTP small GTP- 98.7 4.1E-08 8.9E-13 80.9 6.8 55 218-273 2-61 (161)
132 cd04171 SelB SelB subfamily. 98.7 2.7E-08 5.8E-13 83.8 5.7 55 219-273 2-62 (164)
133 COG0012 Predicted GTPase, prob 98.7 2.7E-08 5.8E-13 95.2 5.4 58 217-275 2-80 (372)
134 TIGR01394 TypA_BipA GTP-bindin 98.7 1.3E-07 2.9E-12 97.1 10.8 130 71-201 37-190 (594)
135 cd01887 IF2_eIF5B IF2/eIF5B (i 98.6 2.3E-07 4.9E-12 78.7 10.3 101 100-201 54-165 (168)
136 cd01899 Ygr210 Ygr210 subfamil 98.6 3.2E-08 7E-13 94.3 5.4 54 220-274 1-81 (318)
137 cd01895 EngA2 EngA2 subfamily. 98.6 3.3E-07 7.1E-12 77.4 11.1 87 114-200 78-173 (174)
138 cd04164 trmE TrmE (MnmE, ThdF, 98.6 1.7E-07 3.8E-12 78.0 8.9 84 112-200 72-155 (157)
139 cd01851 GBP Guanylate-binding 98.6 7.5E-08 1.6E-12 87.4 7.1 60 218-277 8-75 (224)
140 cd04160 Arfrp1 Arfrp1 subfamil 98.6 1.4E-07 3.1E-12 80.1 8.4 97 100-197 54-164 (167)
141 TIGR02729 Obg_CgtA Obg family 98.6 1.2E-07 2.6E-12 90.8 8.7 101 100-200 209-327 (329)
142 cd04163 Era Era subfamily. Er 98.6 4.5E-07 9.8E-12 75.7 11.1 88 112-199 74-166 (168)
143 cd01898 Obg Obg subfamily. Th 98.6 1.2E-07 2.5E-12 80.7 7.6 88 112-199 70-168 (170)
144 KOG1489 Predicted GTP-binding 98.6 2.9E-08 6.4E-13 92.8 3.9 56 219-275 198-257 (366)
145 cd04104 p47_IIGP_like p47 (47- 98.6 9.3E-08 2E-12 84.8 6.3 59 217-275 1-65 (197)
146 COG0536 Obg Predicted GTPase [ 98.6 4.6E-08 1E-12 92.4 4.5 56 219-275 161-220 (369)
147 KOG1491 Predicted GTP-binding 98.6 5.7E-08 1.2E-12 91.5 5.0 60 215-275 18-97 (391)
148 cd04166 CysN_ATPS CysN_ATPS su 98.6 3.4E-08 7.5E-13 88.3 3.4 55 219-273 1-88 (208)
149 cd04124 RabL2 RabL2 subfamily. 98.6 3.2E-07 6.9E-12 78.1 9.2 97 101-199 54-155 (161)
150 PRK12299 obgE GTPase CgtA; Rev 98.6 2.4E-07 5.2E-12 89.0 9.2 103 100-202 210-328 (335)
151 cd01878 HflX HflX subfamily. 98.6 4.5E-07 9.7E-12 80.2 10.1 82 115-199 115-202 (204)
152 PRK00093 GTP-binding protein D 98.6 6.2E-07 1.3E-11 88.8 12.2 89 114-202 249-344 (435)
153 PRK12296 obgE GTPase CgtA; Rev 98.6 4.3E-07 9.3E-12 91.2 10.9 104 100-203 210-341 (500)
154 cd04154 Arl2 Arl2 subfamily. 98.6 2E-07 4.2E-12 80.3 7.4 97 100-197 62-170 (173)
155 cd01887 IF2_eIF5B IF2/eIF5B (i 98.5 1E-07 2.2E-12 80.8 5.4 54 219-273 2-61 (168)
156 cd01879 FeoB Ferrous iron tran 98.5 2.6E-07 5.7E-12 77.4 7.6 80 119-200 73-155 (158)
157 cd04157 Arl6 Arl6 subfamily. 98.5 2.9E-07 6.3E-12 77.5 7.8 97 100-197 49-159 (162)
158 cd04156 ARLTS1 ARLTS1 subfamil 98.5 2.4E-07 5.2E-12 78.1 7.2 97 101-198 49-158 (160)
159 COG0486 ThdF Predicted GTPase 98.5 3.4E-07 7.3E-12 89.8 8.9 91 110-203 286-377 (454)
160 cd04151 Arl1 Arl1 subfamily. 98.5 2.8E-07 6E-12 78.0 7.3 98 100-198 47-156 (158)
161 cd01861 Rab6 Rab6 subfamily. 98.5 1.6E-07 3.4E-12 79.2 5.8 53 219-272 2-59 (161)
162 TIGR03156 GTP_HflX GTP-binding 98.5 8.2E-07 1.8E-11 85.9 11.3 85 111-199 259-349 (351)
163 PRK13768 GTPase; Provisional 98.5 6.1E-07 1.3E-11 82.9 9.7 109 85-201 94-246 (253)
164 cd01862 Rab7 Rab7 subfamily. 98.5 6.3E-07 1.4E-11 76.2 9.0 100 100-200 53-165 (172)
165 cd01885 EF2 EF2 (for archaea a 98.5 7.2E-07 1.6E-11 80.9 9.6 90 70-160 35-138 (222)
166 PRK00454 engB GTP-binding prot 98.5 1.5E-06 3.3E-11 75.9 11.4 84 119-202 105-194 (196)
167 TIGR00092 GTP-binding protein 98.5 2.1E-07 4.5E-12 90.0 6.1 57 218-274 3-79 (368)
168 cd04145 M_R_Ras_like M-Ras/R-R 98.5 6.5E-07 1.4E-11 75.5 8.3 98 100-198 54-160 (164)
169 PRK12298 obgE GTPase CgtA; Rev 98.5 5.3E-07 1.1E-11 88.3 8.7 104 100-203 211-334 (390)
170 cd00154 Rab Rab family. Rab G 98.5 2.3E-07 5E-12 76.9 5.3 56 218-273 1-60 (159)
171 TIGR03598 GTPase_YsxC ribosome 98.5 1E-06 2.2E-11 76.6 9.5 72 120-191 100-179 (179)
172 cd01897 NOG NOG1 is a nucleola 98.5 1.3E-06 2.7E-11 74.3 9.8 81 119-199 78-165 (168)
173 cd04106 Rab23_lke Rab23-like s 98.5 8.5E-07 1.8E-11 74.8 8.7 96 100-198 55-159 (162)
174 cd04149 Arf6 Arf6 subfamily. 98.5 5.4E-07 1.2E-11 77.6 7.5 97 100-197 57-165 (168)
175 smart00175 RAB Rab subfamily o 98.5 9.5E-07 2.1E-11 74.4 8.9 97 100-199 53-159 (164)
176 COG2262 HflX GTPases [General 98.4 9.1E-07 2E-11 85.6 9.6 121 79-202 220-356 (411)
177 PLN03118 Rab family protein; P 98.4 3.9E-07 8.5E-12 81.3 6.7 57 217-273 14-73 (211)
178 cd01889 SelB_euk SelB subfamil 98.4 1.7E-07 3.7E-12 82.4 4.3 56 218-273 1-79 (192)
179 cd01860 Rab5_related Rab5-rela 98.4 4.6E-07 9.9E-12 76.5 6.8 56 218-273 2-61 (163)
180 cd04101 RabL4 RabL4 (Rab-like4 98.4 1.1E-06 2.4E-11 74.3 9.1 95 102-199 58-161 (164)
181 cd01863 Rab18 Rab18 subfamily. 98.4 4.6E-07 1E-11 76.4 6.7 56 218-273 1-60 (161)
182 cd04150 Arf1_5_like Arf1-Arf5- 98.4 6.7E-07 1.5E-11 76.2 7.7 97 100-197 48-156 (159)
183 cd01881 Obg_like The Obg-like 98.4 3.4E-07 7.3E-12 78.1 5.8 99 100-198 48-173 (176)
184 cd00880 Era_like Era (E. coli 98.4 3.1E-07 6.6E-12 75.6 5.3 54 222-275 1-58 (163)
185 cd04127 Rab27A Rab27a subfamil 98.4 1.1E-06 2.3E-11 75.8 8.9 99 100-199 67-174 (180)
186 cd04159 Arl10_like Arl10-like 98.4 8.5E-07 1.8E-11 73.6 7.9 99 100-199 48-158 (159)
187 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.4 7E-07 1.5E-11 77.1 7.6 97 100-197 63-171 (174)
188 cd01866 Rab2 Rab2 subfamily. 98.4 5.7E-07 1.2E-11 77.0 7.0 56 217-272 4-63 (168)
189 COG5257 GCD11 Translation init 98.4 1E-06 2.2E-11 82.7 8.8 102 100-202 90-202 (415)
190 COG0532 InfB Translation initi 98.4 1.2E-06 2.7E-11 87.1 9.9 101 100-202 59-170 (509)
191 cd00880 Era_like Era (E. coli 98.4 2E-06 4.2E-11 70.7 9.8 88 112-199 67-161 (163)
192 KOG0460 Mitochondrial translat 98.4 1.4E-06 3.1E-11 82.3 9.6 88 77-165 96-188 (449)
193 cd01868 Rab11_like Rab11-like. 98.4 6.6E-07 1.4E-11 75.9 6.8 55 218-273 4-63 (165)
194 cd01865 Rab3 Rab3 subfamily. 98.4 1.8E-06 3.8E-11 73.6 9.3 97 100-199 54-160 (165)
195 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.4 1.3E-06 2.7E-11 74.3 8.4 97 100-199 55-161 (166)
196 cd04154 Arl2 Arl2 subfamily. 98.4 5E-07 1.1E-11 77.7 5.9 55 217-273 14-69 (173)
197 cd04112 Rab26 Rab26 subfamily. 98.4 1.6E-06 3.5E-11 76.1 9.1 102 100-202 54-163 (191)
198 cd00878 Arf_Arl Arf (ADP-ribos 98.4 1.1E-06 2.3E-11 74.1 7.7 98 100-198 47-156 (158)
199 cd01850 CDC_Septin CDC/Septin. 98.4 6.1E-07 1.3E-11 83.9 6.6 59 216-274 3-75 (276)
200 PRK10218 GTP-binding protein; 98.4 1.5E-06 3.2E-11 89.6 10.0 129 71-200 41-193 (607)
201 PRK05291 trmE tRNA modificatio 98.4 1.8E-06 3.8E-11 86.2 10.3 96 100-201 267-369 (449)
202 cd01861 Rab6 Rab6 subfamily. 98.4 1.5E-06 3.2E-11 73.2 8.4 99 100-199 53-159 (161)
203 PRK05306 infB translation init 98.4 1.6E-06 3.4E-11 91.5 10.4 100 100-200 341-450 (787)
204 cd01886 EF-G Elongation factor 98.4 2E-06 4.2E-11 80.3 9.9 89 72-161 38-130 (270)
205 cd04158 ARD1 ARD1 subfamily. 98.4 8.8E-07 1.9E-11 76.0 7.0 99 100-199 47-158 (169)
206 CHL00189 infB translation init 98.4 2E-06 4.3E-11 90.1 11.0 101 100-201 299-409 (742)
207 cd04139 RalA_RalB RalA/RalB su 98.4 1.9E-06 4.1E-11 72.4 9.0 98 101-199 53-159 (164)
208 KOG0462 Elongation factor-type 98.4 7.1E-07 1.5E-11 88.7 7.2 135 65-200 89-233 (650)
209 cd04155 Arl3 Arl3 subfamily. 98.4 7.3E-07 1.6E-11 76.2 6.5 55 217-273 14-69 (173)
210 COG0050 TufB GTPases - transla 98.4 2.5E-06 5.4E-11 79.3 10.2 90 77-167 54-148 (394)
211 PF02421 FeoB_N: Ferrous iron 98.4 1.3E-07 2.9E-12 81.1 1.7 77 119-197 77-156 (156)
212 cd04138 H_N_K_Ras_like H-Ras/N 98.4 1.6E-06 3.5E-11 72.6 8.3 98 100-198 53-158 (162)
213 cd00154 Rab Rab family. Rab G 98.4 1.9E-06 4.1E-11 71.4 8.5 97 100-197 53-157 (159)
214 cd04119 RJL RJL (RabJ-Like) su 98.4 1.7E-06 3.8E-11 72.9 8.4 98 100-198 53-163 (168)
215 cd04156 ARLTS1 ARLTS1 subfamil 98.4 5.4E-07 1.2E-11 75.9 5.3 53 219-273 1-55 (160)
216 TIGR00487 IF-2 translation ini 98.4 1.5E-06 3.2E-11 89.3 9.3 99 100-199 139-247 (587)
217 smart00177 ARF ARF-like small 98.4 1.5E-06 3.2E-11 75.3 8.0 99 100-199 61-171 (175)
218 cd00881 GTP_translation_factor 98.4 3.7E-07 8.1E-12 78.6 4.2 55 219-273 1-73 (189)
219 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.4 1.8E-06 3.9E-11 75.3 8.4 98 102-200 58-168 (183)
220 cd01867 Rab8_Rab10_Rab13_like 98.3 2.8E-06 6.1E-11 72.5 9.4 97 100-199 56-162 (167)
221 cd01893 Miro1 Miro1 subfamily. 98.3 1.7E-06 3.6E-11 73.9 7.9 100 100-200 51-162 (166)
222 PTZ00099 rab6; Provisional 98.3 1.7E-06 3.7E-11 75.5 8.0 102 100-202 33-142 (176)
223 cd01864 Rab19 Rab19 subfamily. 98.3 2.5E-06 5.3E-11 72.5 8.8 98 100-198 56-162 (165)
224 PRK12317 elongation factor 1-a 98.3 5.3E-07 1.1E-11 89.2 5.1 58 216-273 5-95 (425)
225 cd04119 RJL RJL (RabJ-Like) su 98.3 1.2E-06 2.5E-11 74.0 6.5 54 218-272 1-59 (168)
226 PLN00223 ADP-ribosylation fact 98.3 1.9E-06 4.2E-11 75.2 8.1 98 100-198 65-174 (181)
227 smart00178 SAR Sar1p-like memb 98.3 1.7E-06 3.6E-11 75.6 7.6 98 100-198 65-181 (184)
228 cd04108 Rab36_Rab34 Rab34/Rab3 98.3 2.7E-06 5.8E-11 73.4 8.8 102 100-202 53-165 (170)
229 PRK12297 obgE GTPase CgtA; Rev 98.3 1.8E-06 4E-11 85.3 8.7 101 100-202 210-327 (424)
230 cd04160 Arfrp1 Arfrp1 subfamil 98.3 5.8E-07 1.3E-11 76.3 4.5 55 219-273 1-61 (167)
231 cd04113 Rab4 Rab4 subfamily. 98.3 2.8E-06 6.1E-11 71.7 8.7 98 100-198 53-158 (161)
232 TIGR00437 feoB ferrous iron tr 98.3 1.1E-06 2.3E-11 90.6 7.2 51 224-275 1-54 (591)
233 smart00173 RAS Ras subfamily o 98.3 2.5E-06 5.4E-11 72.1 8.3 99 100-199 52-159 (164)
234 smart00175 RAB Rab subfamily o 98.3 1.2E-06 2.7E-11 73.7 6.4 55 218-273 1-60 (164)
235 cd00879 Sar1 Sar1 subfamily. 98.3 2E-06 4.4E-11 74.8 8.0 99 100-199 67-188 (190)
236 TIGR00491 aIF-2 translation in 98.3 4.5E-06 9.8E-11 85.8 11.6 101 100-201 73-215 (590)
237 PRK15467 ethanolamine utilizat 98.3 4.7E-07 1E-11 77.5 3.7 47 219-274 3-49 (158)
238 cd04110 Rab35 Rab35 subfamily. 98.3 2.4E-06 5.2E-11 75.6 8.4 98 100-200 59-165 (199)
239 cd00877 Ran Ran (Ras-related n 98.3 1.5E-06 3.2E-11 74.6 6.8 99 100-199 53-156 (166)
240 PF05049 IIGP: Interferon-indu 98.3 1.1E-06 2.4E-11 85.1 6.6 61 216-277 34-101 (376)
241 cd00878 Arf_Arl Arf (ADP-ribos 98.3 9E-07 2E-11 74.5 5.3 53 219-273 1-54 (158)
242 cd04107 Rab32_Rab38 Rab38/Rab3 98.3 2.7E-06 5.8E-11 75.3 8.5 100 100-200 54-166 (201)
243 cd04122 Rab14 Rab14 subfamily. 98.3 3.4E-06 7.3E-11 71.9 8.9 95 100-197 55-159 (166)
244 PRK04213 GTP-binding protein; 98.3 6.1E-06 1.3E-10 72.7 10.7 83 117-200 87-190 (201)
245 cd01864 Rab19 Rab19 subfamily. 98.3 1.7E-06 3.6E-11 73.6 6.8 56 217-272 3-62 (165)
246 cd04157 Arl6 Arl6 subfamily. 98.3 9.6E-07 2.1E-11 74.3 5.2 54 219-273 1-56 (162)
247 cd01867 Rab8_Rab10_Rab13_like 98.3 1.7E-06 3.7E-11 73.8 6.8 56 217-273 3-63 (167)
248 PRK00007 elongation factor G; 98.3 4.4E-06 9.5E-11 87.7 11.2 116 70-187 47-171 (693)
249 cd04113 Rab4 Rab4 subfamily. 98.3 1.6E-06 3.4E-11 73.3 6.4 55 218-273 1-60 (161)
250 cd04145 M_R_Ras_like M-Ras/R-R 98.3 1.8E-06 3.9E-11 72.8 6.8 54 218-273 3-61 (164)
251 cd04118 Rab24 Rab24 subfamily. 98.3 1.4E-06 3.1E-11 76.1 6.3 55 218-273 1-61 (193)
252 cd04144 Ras2 Ras2 subfamily. 98.3 4E-06 8.7E-11 73.5 9.1 99 100-199 51-160 (190)
253 KOG1547 Septin CDC10 and relat 98.3 9.7E-07 2.1E-11 79.9 5.1 60 215-274 44-116 (336)
254 cd04123 Rab21 Rab21 subfamily. 98.3 4E-06 8.8E-11 70.2 8.7 99 100-199 53-159 (162)
255 TIGR02836 spore_IV_A stage IV 98.3 8.9E-07 1.9E-11 86.3 5.2 59 216-274 16-103 (492)
256 cd04138 H_N_K_Ras_like H-Ras/N 98.3 1.9E-06 4E-11 72.2 6.6 54 218-273 2-60 (162)
257 cd01884 EF_Tu EF-Tu subfamily. 98.3 1.1E-06 2.3E-11 78.2 5.3 57 217-273 2-76 (195)
258 cd01868 Rab11_like Rab11-like. 98.3 4.2E-06 9.1E-11 70.9 8.7 96 100-198 56-161 (165)
259 cd04167 Snu114p Snu114p subfam 98.3 7.3E-06 1.6E-10 73.4 10.7 90 70-160 38-136 (213)
260 cd04109 Rab28 Rab28 subfamily. 98.3 4E-06 8.7E-11 75.1 8.9 100 100-200 54-164 (215)
261 cd01860 Rab5_related Rab5-rela 98.3 4.7E-06 1E-10 70.3 8.8 98 101-199 55-160 (163)
262 smart00178 SAR Sar1p-like memb 98.3 1.5E-06 3.2E-11 76.0 5.8 55 217-273 17-72 (184)
263 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.3 1.6E-06 3.5E-11 73.6 6.0 55 218-273 3-62 (166)
264 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.3 1.4E-06 3E-11 75.2 5.6 55 217-273 15-70 (174)
265 cd04136 Rap_like Rap-like subf 98.3 3.6E-06 7.8E-11 70.9 8.0 97 101-198 54-159 (163)
266 cd01876 YihA_EngB The YihA (En 98.3 8.8E-06 1.9E-10 68.1 10.4 82 119-200 80-169 (170)
267 cd01865 Rab3 Rab3 subfamily. 98.3 2.2E-06 4.8E-11 73.0 6.8 55 218-273 2-61 (165)
268 smart00176 RAN Ran (Ras-relate 98.3 3.2E-06 6.9E-11 75.4 8.0 99 100-199 48-151 (200)
269 cd04147 Ras_dva Ras-dva subfam 98.3 4E-06 8.7E-11 74.0 8.5 100 100-200 51-161 (198)
270 cd01866 Rab2 Rab2 subfamily. 98.2 7.8E-06 1.7E-10 69.9 10.0 97 100-199 57-163 (168)
271 cd01863 Rab18 Rab18 subfamily. 98.2 4.6E-06 1E-10 70.3 8.4 98 100-198 53-158 (161)
272 cd00876 Ras Ras family. The R 98.2 5.9E-06 1.3E-10 69.0 8.9 98 100-198 51-157 (160)
273 cd01890 LepA LepA subfamily. 98.2 8.2E-07 1.8E-11 76.3 3.7 56 219-274 2-79 (179)
274 cd04142 RRP22 RRP22 subfamily. 98.2 1.7E-06 3.8E-11 76.8 5.9 55 218-273 1-60 (198)
275 PTZ00369 Ras-like protein; Pro 98.2 3.5E-06 7.5E-11 73.8 7.7 99 100-199 57-164 (189)
276 cd04132 Rho4_like Rho4-like su 98.2 4.4E-06 9.6E-11 72.5 8.3 101 100-201 53-166 (187)
277 cd04121 Rab40 Rab40 subfamily. 98.2 5.2E-06 1.1E-10 73.3 8.8 97 102-199 61-164 (189)
278 CHL00071 tufA elongation facto 98.2 1.5E-06 3.2E-11 85.8 5.9 57 216-272 11-85 (409)
279 PTZ00133 ADP-ribosylation fact 98.2 2.9E-06 6.3E-11 74.1 7.0 99 100-199 65-175 (182)
280 cd01891 TypA_BipA TypA (tyrosi 98.2 1.2E-06 2.6E-11 77.0 4.7 55 219-273 4-76 (194)
281 PRK12739 elongation factor G; 98.2 8.2E-06 1.8E-10 85.7 11.6 92 70-162 45-140 (691)
282 COG4917 EutP Ethanolamine util 98.2 8.9E-06 1.9E-10 66.7 9.2 100 100-200 41-144 (148)
283 cd04140 ARHI_like ARHI subfami 98.2 4.4E-06 9.5E-11 71.2 7.9 100 100-200 53-163 (165)
284 cd04175 Rap1 Rap1 subgroup. T 98.2 4.9E-06 1.1E-10 70.5 8.2 98 100-198 53-159 (164)
285 smart00173 RAS Ras subfamily o 98.2 2.3E-06 5E-11 72.4 6.1 53 219-273 2-59 (164)
286 PRK14845 translation initiatio 98.2 6.9E-06 1.5E-10 88.8 10.9 102 100-202 530-673 (1049)
287 cd04146 RERG_RasL11_like RERG/ 98.2 3.3E-06 7.1E-11 71.8 6.9 99 100-198 51-160 (165)
288 cd04112 Rab26 Rab26 subfamily. 98.2 2.4E-06 5.3E-11 74.9 6.3 53 219-272 2-60 (191)
289 TIGR02528 EutP ethanolamine ut 98.2 1.2E-06 2.7E-11 72.5 4.1 44 219-272 2-45 (142)
290 cd04114 Rab30 Rab30 subfamily. 98.2 6.8E-06 1.5E-10 69.8 8.8 99 100-199 60-166 (169)
291 cd04106 Rab23_lke Rab23-like s 98.2 2.4E-06 5.2E-11 72.0 5.9 54 218-272 1-61 (162)
292 cd00157 Rho Rho (Ras homology) 98.2 2E-06 4.3E-11 73.0 5.4 98 100-198 52-169 (171)
293 cd04159 Arl10_like Arl10-like 98.2 2.6E-06 5.7E-11 70.6 6.0 53 220-273 2-55 (159)
294 KOG2486 Predicted GTPase [Gene 98.2 1.6E-06 3.4E-11 80.1 4.9 57 217-273 136-194 (320)
295 KOG1145 Mitochondrial translat 98.2 7.2E-06 1.6E-10 81.7 9.8 101 100-202 205-316 (683)
296 cd01862 Rab7 Rab7 subfamily. 98.2 3.2E-06 6.9E-11 71.9 6.6 55 218-273 1-60 (172)
297 cd04128 Spg1 Spg1p. Spg1p (se 98.2 6.4E-06 1.4E-10 72.1 8.6 98 102-200 55-164 (182)
298 cd04118 Rab24 Rab24 subfamily. 98.2 5.2E-06 1.1E-10 72.6 8.0 99 102-201 56-165 (193)
299 cd04149 Arf6 Arf6 subfamily. 98.2 2.7E-06 5.9E-11 73.2 6.0 55 217-273 9-64 (168)
300 cd04137 RheB Rheb (Ras Homolog 98.2 1.8E-06 3.8E-11 74.5 4.8 54 218-273 2-60 (180)
301 KOG1144 Translation initiation 98.2 6E-06 1.3E-10 84.6 9.2 102 100-202 544-687 (1064)
302 COG0481 LepA Membrane GTPase L 98.2 3.7E-06 7.9E-11 82.6 7.4 128 71-200 44-184 (603)
303 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.2 3.1E-06 6.8E-11 73.8 6.4 55 217-273 3-63 (183)
304 cd00879 Sar1 Sar1 subfamily. 98.2 2.7E-06 5.8E-11 74.1 5.9 55 217-273 19-74 (190)
305 PRK04004 translation initiatio 98.2 1.1E-05 2.4E-10 83.0 11.3 99 100-199 75-215 (586)
306 TIGR00484 EF-G translation elo 98.2 9.7E-06 2.1E-10 85.1 10.9 93 70-163 47-143 (689)
307 cd04139 RalA_RalB RalA/RalB su 98.2 2.1E-06 4.6E-11 72.2 4.8 53 219-273 2-59 (164)
308 cd01893 Miro1 Miro1 subfamily. 98.2 1.8E-06 4E-11 73.7 4.5 53 219-273 2-58 (166)
309 cd04120 Rab12 Rab12 subfamily. 98.2 8.1E-06 1.7E-10 72.9 8.8 97 102-199 55-160 (202)
310 cd04162 Arl9_Arfrp2_like Arl9/ 98.2 3.4E-06 7.4E-11 72.2 6.1 95 102-197 50-161 (164)
311 cd04125 RabA_like RabA-like su 98.2 3.7E-06 8.1E-11 73.3 6.4 56 218-273 1-60 (188)
312 cd04151 Arl1 Arl1 subfamily. 98.2 3E-06 6.5E-11 71.6 5.5 53 219-273 1-54 (158)
313 cd00876 Ras Ras family. The R 98.2 2.3E-06 4.9E-11 71.6 4.7 53 219-273 1-58 (160)
314 cd04176 Rap2 Rap2 subgroup. T 98.2 6.4E-06 1.4E-10 69.6 7.5 97 101-198 54-159 (163)
315 cd04177 RSR1 RSR1 subgroup. R 98.2 4.3E-06 9.3E-11 71.4 6.5 54 218-273 2-60 (168)
316 cd00157 Rho Rho (Ras homology) 98.2 4.3E-06 9.4E-11 71.0 6.4 55 218-273 1-59 (171)
317 cd04175 Rap1 Rap1 subgroup. T 98.2 2.8E-06 6E-11 72.1 5.2 54 218-273 2-60 (164)
318 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.2 1.1E-05 2.3E-10 69.7 8.9 98 100-198 54-160 (172)
319 cd04122 Rab14 Rab14 subfamily. 98.2 5.2E-06 1.1E-10 70.7 6.9 54 218-273 3-62 (166)
320 cd04126 Rab20 Rab20 subfamily. 98.2 7.1E-06 1.5E-10 74.3 8.0 99 101-200 49-188 (220)
321 cd04136 Rap_like Rap-like subf 98.1 4.7E-06 1E-10 70.2 6.3 54 218-273 2-60 (163)
322 PRK05306 infB translation init 98.1 7.5E-06 1.6E-10 86.5 9.2 58 215-273 288-348 (787)
323 cd04140 ARHI_like ARHI subfami 98.1 5.1E-06 1.1E-10 70.8 6.6 53 218-273 2-60 (165)
324 cd04123 Rab21 Rab21 subfamily. 98.1 3.7E-06 8E-11 70.4 5.6 53 219-272 2-59 (162)
325 cd04168 TetM_like Tet(M)-like 98.1 1.2E-05 2.6E-10 73.5 9.4 88 73-161 39-130 (237)
326 cd04155 Arl3 Arl3 subfamily. 98.1 7.2E-06 1.6E-10 70.0 7.4 97 100-197 62-170 (173)
327 COG2229 Predicted GTPase [Gene 98.1 1.6E-05 3.4E-10 69.3 9.3 95 101-196 73-172 (187)
328 cd04161 Arl2l1_Arl13_like Arl2 98.1 3.8E-06 8.3E-11 72.1 5.5 53 219-273 1-54 (167)
329 PRK12735 elongation factor Tu; 98.1 4.3E-06 9.2E-11 82.2 6.5 57 216-272 11-85 (396)
330 PLN03118 Rab family protein; P 98.1 1E-05 2.2E-10 72.2 8.3 101 100-201 66-176 (211)
331 smart00174 RHO Rho (Ras homolo 98.1 6.2E-06 1.3E-10 70.5 6.6 98 101-199 51-169 (174)
332 cd04135 Tc10 TC10 subfamily. 98.1 5.9E-06 1.3E-10 70.6 6.4 54 218-273 1-59 (174)
333 cd04125 RabA_like RabA-like su 98.1 1.3E-05 2.9E-10 69.8 8.7 97 101-200 54-160 (188)
334 cd04116 Rab9 Rab9 subfamily. 98.1 6.8E-06 1.5E-10 70.1 6.7 55 217-272 5-64 (170)
335 cd04124 RabL2 RabL2 subfamily. 98.1 5.9E-06 1.3E-10 70.2 6.2 56 218-273 1-60 (161)
336 cd04110 Rab35 Rab35 subfamily. 98.1 7.3E-06 1.6E-10 72.5 6.8 56 217-273 6-66 (199)
337 TIGR00487 IF-2 translation ini 98.1 4.7E-06 1E-10 85.7 6.3 59 214-273 84-146 (587)
338 PRK12740 elongation factor G; 98.1 2.6E-05 5.7E-10 81.5 11.9 90 71-161 33-126 (668)
339 cd04169 RF3 RF3 subfamily. Pe 98.1 3.4E-05 7.4E-10 71.9 11.4 88 74-162 47-138 (267)
340 cd01892 Miro2 Miro2 subfamily. 98.1 3.6E-06 7.8E-11 72.4 4.3 85 116-200 73-164 (169)
341 cd01886 EF-G Elongation factor 98.1 3.9E-06 8.4E-11 78.3 4.8 55 219-273 1-75 (270)
342 cd04111 Rab39 Rab39 subfamily. 98.1 1.6E-05 3.4E-10 71.3 8.6 100 100-200 56-164 (211)
343 cd04176 Rap2 Rap2 subgroup. T 98.1 8.2E-06 1.8E-10 69.0 6.4 54 218-273 2-60 (163)
344 cd04158 ARD1 ARD1 subfamily. 98.1 6.4E-06 1.4E-10 70.7 5.8 51 219-273 1-54 (169)
345 TIGR00231 small_GTP small GTP- 98.1 2.7E-06 5.9E-11 69.9 3.3 98 100-198 54-160 (161)
346 cd00882 Ras_like_GTPase Ras-li 98.1 1.6E-05 3.5E-10 64.2 7.9 97 100-197 49-155 (157)
347 PF00735 Septin: Septin; Inte 98.1 4.9E-06 1.1E-10 78.1 5.3 58 217-274 4-75 (281)
348 cd04115 Rab33B_Rab33A Rab33B/R 98.1 9.6E-06 2.1E-10 69.5 6.6 55 218-273 3-62 (170)
349 KOG1486 GTP-binding protein DR 98.1 7.2E-06 1.6E-10 74.8 6.0 58 216-274 61-121 (364)
350 cd04109 Rab28 Rab28 subfamily. 98.1 8.8E-06 1.9E-10 72.9 6.6 54 218-272 1-60 (215)
351 cd04130 Wrch_1 Wrch-1 subfamil 98.1 6.6E-06 1.4E-10 70.7 5.5 96 101-197 53-169 (173)
352 PLN03071 GTP-binding nuclear p 98.0 9.9E-06 2.1E-10 73.0 6.8 99 100-199 66-169 (219)
353 cd01874 Cdc42 Cdc42 subfamily. 98.0 1.3E-05 2.7E-10 69.6 7.2 97 102-199 55-172 (175)
354 cd04132 Rho4_like Rho4-like su 98.0 8.5E-06 1.8E-10 70.7 6.0 54 218-272 1-59 (187)
355 cd04144 Ras2 Ras2 subfamily. 98.0 7.3E-06 1.6E-10 71.8 5.6 53 219-273 1-58 (190)
356 cd00877 Ran Ran (Ras-related n 98.0 1E-05 2.2E-10 69.4 6.3 55 219-273 2-60 (166)
357 PLN03108 Rab family protein; P 98.0 3.7E-05 7.9E-10 68.7 10.2 96 100-196 59-162 (210)
358 PLN03110 Rab GTPase; Provision 98.0 1.1E-05 2.3E-10 72.6 6.7 57 216-273 11-72 (216)
359 cd04150 Arf1_5_like Arf1-Arf5- 98.0 8.3E-06 1.8E-10 69.4 5.6 54 218-273 1-55 (159)
360 cd04116 Rab9 Rab9 subfamily. 98.0 3.3E-05 7.2E-10 65.8 9.3 96 102-198 60-167 (170)
361 PLN03127 Elongation factor Tu; 98.0 8.6E-06 1.9E-10 81.3 6.3 58 216-273 60-135 (447)
362 cd04142 RRP22 RRP22 subfamily. 98.0 2.4E-05 5.1E-10 69.5 8.5 84 115-198 75-170 (198)
363 cd04101 RabL4 RabL4 (Rab-like4 98.0 1.1E-05 2.3E-10 68.2 6.0 56 218-273 1-63 (164)
364 PRK11058 GTPase HflX; Provisio 98.0 2.7E-05 5.9E-10 77.2 9.7 99 100-201 249-361 (426)
365 cd01871 Rac1_like Rac1-like su 98.0 1.5E-05 3.2E-10 69.0 7.0 98 100-198 53-171 (174)
366 cd04114 Rab30 Rab30 subfamily. 98.0 1.1E-05 2.4E-10 68.4 6.0 56 217-273 7-67 (169)
367 PTZ00133 ADP-ribosylation fact 98.0 1.1E-05 2.4E-10 70.4 6.0 55 217-273 17-72 (182)
368 cd04127 Rab27A Rab27a subfamil 98.0 1.1E-05 2.4E-10 69.4 6.0 25 217-241 4-28 (180)
369 PRK09554 feoB ferrous iron tra 98.0 2.6E-05 5.6E-10 82.6 9.5 81 119-201 84-167 (772)
370 cd01870 RhoA_like RhoA-like su 98.0 1.8E-05 3.9E-10 67.6 6.9 97 102-199 55-172 (175)
371 PLN03110 Rab GTPase; Provision 98.0 4.6E-05 9.9E-10 68.5 9.7 96 102-200 67-172 (216)
372 cd04107 Rab32_Rab38 Rab38/Rab3 98.0 1.3E-05 2.8E-10 70.9 6.0 55 218-273 1-61 (201)
373 cd04161 Arl2l1_Arl13_like Arl2 98.0 2.1E-05 4.5E-10 67.5 7.2 97 100-197 47-164 (167)
374 cd04135 Tc10 TC10 subfamily. 98.0 1.1E-05 2.5E-10 68.8 5.5 98 100-198 52-170 (174)
375 PF08477 Miro: Miro-like prote 98.0 1.3E-05 2.7E-10 64.3 5.4 56 219-274 1-62 (119)
376 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.0 3.4E-05 7.3E-10 70.5 8.8 98 102-200 67-186 (232)
377 cd04115 Rab33B_Rab33A Rab33B/R 98.0 4.4E-05 9.6E-10 65.3 9.1 101 100-201 55-165 (170)
378 PRK13351 elongation factor G; 98.0 6.9E-05 1.5E-09 78.7 12.3 89 72-161 47-139 (687)
379 smart00177 ARF ARF-like small 98.0 1.5E-05 3.2E-10 69.0 6.1 55 217-273 13-68 (175)
380 PRK05506 bifunctional sulfate 98.0 5.1E-06 1.1E-10 86.3 3.7 27 216-242 23-49 (632)
381 smart00174 RHO Rho (Ras homolo 98.0 1.4E-05 3.1E-10 68.2 5.9 53 220-273 1-57 (174)
382 cd04111 Rab39 Rab39 subfamily. 98.0 1.3E-05 2.8E-10 71.8 5.7 55 218-273 3-63 (211)
383 cd04146 RERG_RasL11_like RERG/ 98.0 1.1E-05 2.4E-10 68.4 5.1 54 219-274 1-59 (165)
384 cd04137 RheB Rheb (Ras Homolog 98.0 5E-05 1.1E-09 65.4 9.2 101 100-201 53-162 (180)
385 COG1217 TypA Predicted membran 97.9 6.4E-05 1.4E-09 73.9 10.7 116 73-189 43-172 (603)
386 PLN03108 Rab family protein; P 97.9 2.1E-05 4.5E-10 70.3 6.9 57 217-273 6-66 (210)
387 PRK00049 elongation factor Tu; 97.9 1.3E-05 2.9E-10 78.7 6.0 57 216-272 11-85 (396)
388 cd04117 Rab15 Rab15 subfamily. 97.9 3.8E-05 8.2E-10 65.3 8.0 95 102-199 55-159 (161)
389 PTZ00369 Ras-like protein; Pro 97.9 2.1E-05 4.6E-10 68.8 6.5 56 217-273 5-64 (189)
390 cd04117 Rab15 Rab15 subfamily. 97.9 2.2E-05 4.7E-10 66.8 6.3 54 219-273 2-60 (161)
391 cd01875 RhoG RhoG subfamily. 97.9 3.5E-05 7.7E-10 67.7 7.9 98 101-199 56-174 (191)
392 cd04133 Rop_like Rop subfamily 97.9 1.9E-05 4.1E-10 68.9 6.1 97 102-199 55-170 (176)
393 TIGR00450 mnmE_trmE_thdF tRNA 97.9 5E-05 1.1E-09 75.7 9.8 95 100-199 255-357 (442)
394 TIGR00437 feoB ferrous iron tr 97.9 1.5E-05 3.2E-10 82.2 6.1 80 119-200 71-153 (591)
395 cd04108 Rab36_Rab34 Rab34/Rab3 97.9 1.9E-05 4.1E-10 68.1 5.8 54 219-273 2-60 (170)
396 KOG0461 Selenocysteine-specifi 97.9 5E-05 1.1E-09 72.1 8.9 99 100-199 74-190 (522)
397 cd01870 RhoA_like RhoA-like su 97.9 2.6E-05 5.6E-10 66.7 6.5 54 219-273 3-60 (175)
398 cd04170 EF-G_bact Elongation f 97.9 1E-05 2.3E-10 75.0 4.4 22 219-240 1-22 (268)
399 cd04147 Ras_dva Ras-dva subfam 97.9 1.8E-05 3.9E-10 69.9 5.7 53 219-273 1-58 (198)
400 PRK09866 hypothetical protein; 97.9 2.2E-05 4.7E-10 80.4 6.8 56 218-274 70-129 (741)
401 cd04170 EF-G_bact Elongation f 97.9 7.9E-05 1.7E-09 69.1 10.1 116 76-193 42-164 (268)
402 TIGR00475 selB selenocysteine- 97.9 1.5E-05 3.3E-10 82.0 5.7 54 219-272 2-60 (581)
403 cd04131 Rnd Rnd subfamily. Th 97.9 4.1E-05 8.9E-10 66.7 7.6 97 102-199 55-173 (178)
404 cd04177 RSR1 RSR1 subgroup. R 97.9 4.3E-05 9.3E-10 65.2 7.6 98 100-198 53-160 (168)
405 cd04148 RGK RGK subfamily. Th 97.9 2E-05 4.3E-10 71.1 5.7 55 219-273 2-61 (221)
406 PRK12736 elongation factor Tu; 97.9 1.9E-05 4.1E-10 77.5 5.6 57 216-272 11-85 (394)
407 TIGR00485 EF-Tu translation el 97.9 2.3E-05 5.1E-10 76.9 6.2 58 216-273 11-86 (394)
408 cd04134 Rho3 Rho3 subfamily. 97.9 2.6E-05 5.6E-10 68.3 5.9 98 102-200 54-172 (189)
409 cd04168 TetM_like Tet(M)-like 97.9 1.5E-05 3.4E-10 72.8 4.7 56 219-274 1-76 (237)
410 PLN03071 GTP-binding nuclear p 97.9 3.7E-05 8E-10 69.3 7.1 58 216-273 12-73 (219)
411 PLN00223 ADP-ribosylation fact 97.9 2.8E-05 6.1E-10 67.9 6.1 54 217-272 17-71 (181)
412 cd04143 Rhes_like Rhes_like su 97.9 6.3E-05 1.4E-09 69.2 8.7 101 100-201 52-170 (247)
413 cd04105 SR_beta Signal recogni 97.9 2.6E-05 5.6E-10 69.5 5.9 54 219-274 2-60 (203)
414 CHL00189 infB translation init 97.8 1.6E-05 3.5E-10 83.4 5.0 59 214-273 241-306 (742)
415 cd04148 RGK RGK subfamily. Th 97.8 5.8E-05 1.3E-09 68.1 7.9 98 100-201 54-162 (221)
416 cd04126 Rab20 Rab20 subfamily. 97.8 2.6E-05 5.6E-10 70.6 5.5 54 218-273 1-55 (220)
417 COG1100 GTPase SAR1 and relate 97.8 3.3E-05 7.1E-10 68.7 6.1 55 218-273 6-65 (219)
418 TIGR00491 aIF-2 translation in 97.8 1.9E-05 4.1E-10 81.2 5.2 36 217-254 4-40 (590)
419 cd04141 Rit_Rin_Ric Rit/Rin/Ri 97.8 4.4E-05 9.5E-10 65.9 6.7 56 217-273 2-61 (172)
420 TIGR00484 EF-G translation elo 97.8 1.9E-05 4.1E-10 82.9 5.2 57 218-274 11-87 (689)
421 cd00882 Ras_like_GTPase Ras-li 97.8 1.9E-05 4.1E-10 63.8 4.1 50 222-273 1-56 (157)
422 PRK00007 elongation factor G; 97.8 2.6E-05 5.7E-10 81.9 5.6 57 217-273 10-86 (693)
423 PRK00741 prfC peptide chain re 97.8 0.00015 3.3E-09 73.8 10.8 88 74-162 55-146 (526)
424 cd04169 RF3 RF3 subfamily. Pe 97.8 3.9E-05 8.4E-10 71.5 6.0 22 219-240 4-25 (267)
425 KOG1489 Predicted GTP-binding 97.8 0.00014 3.1E-09 68.4 9.7 99 99-199 247-364 (366)
426 PRK07560 elongation factor EF- 97.8 0.00012 2.6E-09 77.4 10.3 90 70-160 55-152 (731)
427 cd04130 Wrch_1 Wrch-1 subfamil 97.8 3.9E-05 8.5E-10 65.8 5.5 54 218-273 1-59 (173)
428 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 97.8 8.4E-05 1.8E-09 65.1 7.7 96 103-199 60-177 (182)
429 PF10662 PduV-EutP: Ethanolami 97.8 2.6E-05 5.7E-10 65.8 4.1 45 219-273 3-47 (143)
430 cd04134 Rho3 Rho3 subfamily. 97.8 6.1E-05 1.3E-09 65.9 6.6 54 219-273 2-59 (189)
431 cd04162 Arl9_Arfrp2_like Arl9/ 97.8 4.5E-05 9.7E-10 65.3 5.5 53 220-273 2-55 (164)
432 KOG1423 Ras-like GTPase ERA [C 97.8 0.00012 2.5E-09 68.8 8.5 91 112-202 147-271 (379)
433 cd01874 Cdc42 Cdc42 subfamily. 97.7 7.3E-05 1.6E-09 64.8 6.8 55 218-273 2-60 (175)
434 PLN03126 Elongation factor Tu; 97.7 4.3E-05 9.3E-10 76.8 6.0 57 216-272 80-154 (478)
435 cd01873 RhoBTB RhoBTB subfamil 97.7 8.2E-05 1.8E-09 65.9 7.0 82 117-198 84-192 (195)
436 cd01882 BMS1 Bms1. Bms1 is an 97.7 5.3E-05 1.1E-09 68.7 5.8 57 215-273 37-94 (225)
437 PRK04004 translation initiatio 97.7 4.7E-05 1E-09 78.4 6.1 26 216-241 5-30 (586)
438 cd01882 BMS1 Bms1. Bms1 is an 97.7 0.00015 3.2E-09 65.8 8.7 84 100-187 87-181 (225)
439 PTZ00416 elongation factor 2; 97.7 0.00013 2.9E-09 78.1 9.8 89 71-160 55-157 (836)
440 PRK12739 elongation factor G; 97.7 3.2E-05 6.9E-10 81.3 4.9 57 217-273 8-84 (691)
441 PF00350 Dynamin_N: Dynamin fa 97.7 3.9E-05 8.4E-10 65.4 4.6 31 220-250 1-31 (168)
442 KOG0094 GTPase Rab6/YPT6/Ryh1, 97.7 0.00036 7.8E-09 61.5 10.4 122 82-203 51-186 (221)
443 KOG0459 Polypeptide release fa 97.7 2.7E-05 5.9E-10 75.2 3.3 125 69-194 128-278 (501)
444 PF00009 GTP_EFTU: Elongation 97.7 2.3E-05 5.1E-10 68.6 2.6 57 217-273 3-81 (188)
445 cd01892 Miro2 Miro2 subfamily. 97.7 0.00012 2.5E-09 63.0 6.9 56 217-273 4-65 (169)
446 COG0536 Obg Predicted GTPase [ 97.7 0.00023 4.9E-09 67.8 9.2 104 100-204 211-335 (369)
447 PRK05124 cysN sulfate adenylyl 97.7 5.2E-05 1.1E-09 76.3 5.2 25 216-240 26-50 (474)
448 PRK10512 selenocysteinyl-tRNA- 97.7 7.1E-05 1.5E-09 77.5 6.2 54 219-272 2-61 (614)
449 cd04143 Rhes_like Rhes_like su 97.7 7.7E-05 1.7E-09 68.7 5.8 53 219-273 2-59 (247)
450 TIGR00503 prfC peptide chain r 97.6 0.00024 5.2E-09 72.3 9.8 88 73-161 55-146 (527)
451 KOG2655 Septin family protein 97.6 5.8E-05 1.3E-09 72.6 4.9 59 216-274 20-91 (366)
452 COG0370 FeoB Fe2+ transport sy 97.6 3.4E-05 7.3E-10 79.1 3.1 82 119-202 80-164 (653)
453 cd01883 EF1_alpha Eukaryotic e 97.6 5.8E-05 1.2E-09 68.0 4.2 55 219-273 1-88 (219)
454 COG5019 CDC3 Septin family pro 97.6 7.8E-05 1.7E-09 71.4 5.1 60 215-274 21-94 (373)
455 cd01871 Rac1_like Rac1-like su 97.6 9E-05 1.9E-09 64.1 5.1 54 218-273 2-60 (174)
456 PLN00116 translation elongatio 97.6 0.00032 7E-09 75.3 10.1 89 71-160 55-163 (843)
457 TIGR00483 EF-1_alpha translati 97.6 9.7E-05 2.1E-09 73.2 5.7 57 216-272 6-95 (426)
458 PF00025 Arf: ADP-ribosylation 97.6 3.7E-05 8.1E-10 66.7 2.5 83 116-198 77-172 (175)
459 KOG0078 GTP-binding protein SE 97.6 0.00033 7.1E-09 62.3 8.4 93 102-196 66-168 (207)
460 cd04128 Spg1 Spg1p. Spg1p (se 97.6 0.00017 3.7E-09 63.0 6.6 55 218-273 1-60 (182)
461 cd01896 DRG The developmentall 97.6 0.00026 5.6E-09 64.6 7.9 48 148-200 177-224 (233)
462 cd04167 Snu114p Snu114p subfam 97.6 5.3E-05 1.2E-09 67.8 3.2 23 219-241 2-24 (213)
463 cd01885 EF2 EF2 (for archaea a 97.5 0.00013 2.7E-09 66.3 5.5 23 219-241 2-24 (222)
464 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 97.5 0.00034 7.4E-09 63.4 8.3 97 102-199 55-173 (222)
465 PTZ00132 GTP-binding nuclear p 97.5 0.00021 4.6E-09 63.8 6.7 57 217-273 9-69 (215)
466 cd04131 Rnd Rnd subfamily. Th 97.5 0.00024 5.3E-09 61.8 6.8 54 218-272 2-59 (178)
467 PTZ00132 GTP-binding nuclear p 97.5 0.00037 7.9E-09 62.2 7.9 97 101-198 63-164 (215)
468 TIGR02034 CysN sulfate adenyly 97.5 8E-05 1.7E-09 73.4 3.9 55 218-272 1-90 (406)
469 PF00071 Ras: Ras family; Int 97.5 0.00023 5.1E-09 59.8 6.2 54 219-273 1-59 (162)
470 cd04129 Rho2 Rho2 subfamily. 97.5 0.00024 5.2E-09 62.0 6.0 83 117-199 69-170 (187)
471 PF00071 Ras: Ras family; Int 97.5 0.00031 6.7E-09 59.1 6.5 97 100-197 52-156 (162)
472 cd04105 SR_beta Signal recogni 97.5 0.00033 7.1E-09 62.4 6.9 62 100-162 52-124 (203)
473 KOG0084 GTPase Rab1/YPT1, smal 97.5 0.00077 1.7E-08 59.4 8.9 130 66-198 23-168 (205)
474 cd04121 Rab40 Rab40 subfamily. 97.4 0.00035 7.5E-09 61.6 6.8 56 217-273 6-66 (189)
475 KOG0075 GTP-binding ADP-ribosy 97.4 0.0013 2.9E-08 55.5 9.8 119 82-200 49-180 (186)
476 cd04102 RabL3 RabL3 (Rab-like3 97.4 0.00029 6.3E-09 62.9 6.3 55 218-273 1-65 (202)
477 cd04120 Rab12 Rab12 subfamily. 97.4 0.00031 6.6E-09 62.7 6.4 54 219-273 2-60 (202)
478 cd04129 Rho2 Rho2 subfamily. 97.4 0.00038 8.2E-09 60.7 6.5 54 219-273 3-60 (187)
479 KOG0092 GTPase Rab5/YPT51 and 97.4 0.00019 4.1E-09 63.0 4.4 117 84-202 36-167 (200)
480 COG0480 FusA Translation elong 97.4 0.00069 1.5E-08 70.9 9.3 93 70-163 47-144 (697)
481 KOG0466 Translation initiation 97.4 0.00032 6.9E-09 65.8 6.0 100 100-200 129-239 (466)
482 smart00053 DYNc Dynamin, GTPas 97.4 0.00054 1.2E-08 62.9 7.4 96 188-288 2-151 (240)
483 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 97.4 0.00041 9E-09 62.9 6.4 54 218-272 2-59 (222)
484 TIGR01393 lepA GTP-binding pro 97.3 0.00024 5.3E-09 73.4 5.2 56 219-274 5-82 (595)
485 PF00025 Arf: ADP-ribosylation 97.3 0.00025 5.4E-09 61.5 4.0 55 216-272 13-68 (175)
486 cd01875 RhoG RhoG subfamily. 97.3 0.00069 1.5E-08 59.5 6.6 55 217-272 3-61 (191)
487 cd04103 Centaurin_gamma Centau 97.3 0.00077 1.7E-08 57.4 6.7 81 118-198 63-155 (158)
488 PRK10218 GTP-binding protein; 97.3 0.00042 9.2E-09 71.6 6.0 57 218-274 6-80 (607)
489 PF09439 SRPRB: Signal recogni 97.3 0.00019 4.2E-09 63.0 2.9 62 99-162 52-127 (181)
490 TIGR00490 aEF-2 translation el 97.2 0.00049 1.1E-08 72.7 6.1 90 71-161 55-152 (720)
491 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 97.2 0.00089 1.9E-08 58.6 6.8 55 217-272 5-63 (182)
492 cd04103 Centaurin_gamma Centau 97.2 0.00079 1.7E-08 57.3 6.3 53 218-273 1-58 (158)
493 PLN00023 GTP-binding protein; 97.2 0.00077 1.7E-08 64.4 6.6 57 217-273 21-94 (334)
494 TIGR03680 eif2g_arch translati 97.2 0.00037 8.1E-09 68.7 4.6 24 217-240 4-27 (406)
495 KOG1487 GTP-binding protein DR 97.2 0.00044 9.5E-09 63.6 4.6 57 218-275 60-119 (358)
496 cd04133 Rop_like Rop subfamily 97.2 0.00077 1.7E-08 58.7 6.0 55 218-273 2-60 (176)
497 cd01888 eIF2_gamma eIF2-gamma 97.2 0.00044 9.6E-09 61.4 4.6 23 218-240 1-23 (203)
498 cd04104 p47_IIGP_like p47 (47- 97.2 0.0017 3.6E-08 57.5 8.1 83 118-202 78-184 (197)
499 TIGR01394 TypA_BipA GTP-bindin 97.2 0.00055 1.2E-08 70.7 5.7 55 219-273 3-75 (594)
500 PTZ00141 elongation factor 1- 97.2 0.00058 1.2E-08 68.2 5.6 57 216-272 6-95 (446)
No 1
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=100.00 E-value=3.9e-42 Score=322.45 Aligned_cols=217 Identities=43% Similarity=0.805 Sum_probs=194.1
Q ss_pred ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCeEEEEeccCCccHHhHHHHHHHHHhhCce
Q 020668 99 PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTK 178 (323)
Q Consensus 99 ~i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~iiVlNK~DLl~~~~~~~~~~~~~~~g~~ 178 (323)
.++||||||.+..+++++.++++|+||+|+|+|.|.+..++.+.+++.++|+++|+||+||++......|.+++++.+..
T Consensus 3 ~~~wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~ 82 (287)
T PRK09563 3 KIQWFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIGNKPRLLILNKSDLADPEVTKKWIEYFEEQGIK 82 (287)
T ss_pred cCcCcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhCCCCEEEEEEchhcCCHHHHHHHHHHHHHcCCe
Confidence 48999999999999999999999999999999999999999998888899999999999998776677888888766677
Q ss_pred EEEecCcCCCcchhhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEE
Q 020668 179 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV 258 (323)
Q Consensus 179 vi~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~ 258 (323)
++++|++++.|+++|.+.+.++.+....+.+.++.....++++++|+||||||||||+|.+++.+.+++.||+|++.+++
T Consensus 83 vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~ 162 (287)
T PRK09563 83 ALAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWI 162 (287)
T ss_pred EEEEECCCcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEE
Confidence 89999999999999999888776554333333444456789999999999999999999999988999999999999999
Q ss_pred EeCCcEEEEecCCccCCCCCCHHHHHHHHhcccccccCcChHHHHHHHHHHHhcCCC
Q 020668 259 RFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPT 315 (323)
Q Consensus 259 ~~~~~~~liDTPGi~~~~~~d~~~~~~La~~~~i~~~~~~~~~v~~~ll~~L~~~~~ 315 (323)
..+.+++|+||||++.+...+.+.+.+|++++++++..++..+++.++++.|++...
T Consensus 163 ~~~~~~~l~DtPGi~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~ll~~l~~~~~ 219 (287)
T PRK09563 163 KLGKGLELLDTPGILWPKLEDQEVGLKLALTGAIKDEALDLEEVAIFALEYLSKHYP 219 (287)
T ss_pred EeCCcEEEEECCCcCCCCCCcHHHHHHHHHhCCcchhhcChHHHHHHHHHHHHhhCH
Confidence 999999999999999999889999999999999999999999999999999988653
No 2
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=100.00 E-value=4.4e-42 Score=320.45 Aligned_cols=216 Identities=44% Similarity=0.754 Sum_probs=193.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCeEEEEeccCCccHHhHHHHHHHHHhhCceE
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKV 179 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~iiVlNK~DLl~~~~~~~~~~~~~~~g~~v 179 (323)
++||||||.+..+++.+.++++|+||+|+|+|.|.+..++.+.+++.++|+++|+||+|+++..+...|.+++++.+..+
T Consensus 1 ~~WfpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~v 80 (276)
T TIGR03596 1 IQWFPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRGNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKA 80 (276)
T ss_pred CccChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHCCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeE
Confidence 58999999999999999999999999999999999999999999888899999999999987766778888886666788
Q ss_pred EEecCcCCCcchhhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEE
Q 020668 180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR 259 (323)
Q Consensus 180 i~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~ 259 (323)
+++|++++.|+++|.+.+.++.+........++.....++++++|+||||||||||+|.+++.+.+++.||+|+..+++.
T Consensus 81 i~iSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~ 160 (276)
T TIGR03596 81 LAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIK 160 (276)
T ss_pred EEEECCCcccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEE
Confidence 99999999999999988887765544333344445567899999999999999999999998899999999999999999
Q ss_pred eCCcEEEEecCCccCCCCCCHHHHHHHHhcccccccCcChHHHHHHHHHHHhcCCC
Q 020668 260 FGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPT 315 (323)
Q Consensus 260 ~~~~~~liDTPGi~~~~~~d~~~~~~La~~~~i~~~~~~~~~v~~~ll~~L~~~~~ 315 (323)
++.++.|+||||++.+++.+.+.+.+|++++++++..++..+++.++++.|++...
T Consensus 161 ~~~~~~l~DtPG~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~~~~~~~~~l~~~~~ 216 (276)
T TIGR03596 161 LSDGLELLDTPGILWPKFEDQEVGLKLAATGAIKDEALDLEDVALFLLEYLLEHYP 216 (276)
T ss_pred eCCCEEEEECCCcccCCCCchHHHHHHHHhCCcccccCChHHHHHHHHHHHHhhCH
Confidence 98899999999999999999999999999999999999999999999999988654
No 3
>COG1161 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=3.9e-38 Score=299.54 Aligned_cols=215 Identities=38% Similarity=0.706 Sum_probs=193.1
Q ss_pred ccccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCeEEEEeccCCccHHhHHHHHHHHHhh-
Q 020668 97 LRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ- 175 (323)
Q Consensus 97 l~~i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~iiVlNK~DLl~~~~~~~~~~~~~~~- 175 (323)
...++||||||.++.+++.+.++.+|+|++|+|+|+|.+++++.+.+++.+++.++|+||+||++....++|.+++.+.
T Consensus 11 ~~~i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~ 90 (322)
T COG1161 11 YNKIQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVKEKPKLLVLNKADLAPKEVTKKWKKYFKKEE 90 (322)
T ss_pred cccccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHccCCcEEEEehhhcCCHHHHHHHHHHHHhcC
Confidence 3469999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CceEEEecCcCCCcchhhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE
Q 020668 176 GTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL 255 (323)
Q Consensus 176 g~~vi~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~ 255 (323)
+...++++++.+.+...+...+..+....-...+.++..+...++++||+||||||||||+|++++.+.+|+.||+|++.
T Consensus 91 ~~~~~~v~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~ 170 (322)
T COG1161 91 GIKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGI 170 (322)
T ss_pred CCccEEEEeecccCccchHHHHHHHHHHHHHHHhhcCCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecce
Confidence 57788999999988888876555554333333344555666788999999999999999999999999999999999999
Q ss_pred EEEEeCCcEEEEecCCccCCCCCC-HHHHHHHHhcccccccCcChHHHHHHHHHHHh
Q 020668 256 KWVRFGKDLEFLDSPGIIPMRISD-QAAAIKLAICDDIGERSYDVADVAAILVQMLA 311 (323)
Q Consensus 256 ~~~~~~~~~~liDTPGi~~~~~~d-~~~~~~La~~~~i~~~~~~~~~v~~~ll~~L~ 311 (323)
+++.++.+++|+|||||+++...+ ...+.+++.+++|++..++..+++.+++..+.
T Consensus 171 q~i~~~~~i~LlDtPGii~~~~~~~~~v~~~l~~~~~Ik~~~~~~~~v~~~~~~~~~ 227 (322)
T COG1161 171 QWIKLDDGIYLLDTPGIIPPKFDDDELVLLKLAPKGEIKDPVLPADEVAERLLGGLL 227 (322)
T ss_pred EEEEcCCCeEEecCCCcCCCCccchHHHhhccccccccCccccChHHHHHHHHhhhh
Confidence 999999999999999999998888 88889999999999999999999999998873
No 4
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=100.00 E-value=3.1e-36 Score=277.26 Aligned_cols=223 Identities=31% Similarity=0.512 Sum_probs=184.1
Q ss_pred eeeccccccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCeEEEEeccCCccHHhHHHHHHH
Q 020668 92 YWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATY 171 (323)
Q Consensus 92 ~~~~~l~~i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~iiVlNK~DLl~~~~~~~~~~~ 171 (323)
.|..-..+..||||||.+..+.+++.+...|+||+|.|||.|++++++.+.+++..++.|||+||+||++..+.....++
T Consensus 18 ~~~~~~~~~~wfpgHmakalr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~~k~riiVlNK~DLad~~~~k~~iq~ 97 (335)
T KOG2485|consen 18 IFAKYNMPRRWFPGHMAKALRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLPPKPRIIVLNKMDLADPKEQKKIIQY 97 (335)
T ss_pred cccccCCccccCchHHHHHHHHHHhhcccccEEEEeeccccCCccccHHHHHhcCCCceEEEEecccccCchhhhHHHHH
Confidence 34445677999999999999999999999999999999999999999999999999999999999999997777777777
Q ss_pred HHhhC-ceEEEecCcCCCc--chhhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhh-----cCccc
Q 020668 172 FAKQG-TKVIFSNGQLGMG--TMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL-----KRRMC 243 (323)
Q Consensus 172 ~~~~g-~~vi~iSa~~g~g--i~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~-----~~~~~ 243 (323)
++..+ ..++..++....+ +..+...+..+..+....-+ ..+...+++|||.||||||||||++. .++.+
T Consensus 98 ~~~~~~~~~~~~~c~~~~~~~v~~l~~il~~~~~~l~r~ir---t~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a 174 (335)
T KOG2485|consen 98 LEWQNLESYIKLDCNKDCNKQVSPLLKILTILSEELVRFIR---TLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAA 174 (335)
T ss_pred HHhhcccchhhhhhhhhhhhccccHHHHHHHHHHHHHHhhc---ccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccce
Confidence 76544 3445555554433 66666665555444332111 12346789999999999999999976 34677
Q ss_pred cccCCCCceeeEEE-EEe--CCcEEEEecCCccCCCCCCHHHHHHHHhcccccccCcChHHHHHHHHHHHhcCCCCC
Q 020668 244 PAAPRPGVTRVLKW-VRF--GKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVG 317 (323)
Q Consensus 244 ~v~~~pgtT~~~~~-~~~--~~~~~liDTPGi~~~~~~d~~~~~~La~~~~i~~~~~~~~~v~~~ll~~L~~~~~~~ 317 (323)
.|++.||.|+.+.. +++ ...++++||||++.|.+.|.+.+++||+||+.+++.++..-+++++++.|+++...+
T Consensus 175 ~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~~e~~lKLAL~g~Vkd~~V~~~~~adylL~~lN~~~~~~ 251 (335)
T KOG2485|consen 175 RVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIVDVEDGLKLALCGLVKDHLVGEETIADYLLYLLNSHSDFS 251 (335)
T ss_pred eccCCCCceeeehhheEeccCCceEEecCCCcCCCCCCCHHHhhhhhhcccccccccCHHHHHHHHHHHHhccCcch
Confidence 89999999999764 555 456999999999999999999999999999999999999999999999999987654
No 5
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=100.00 E-value=5.4e-33 Score=241.34 Aligned_cols=171 Identities=47% Similarity=0.907 Sum_probs=145.1
Q ss_pred cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCeEEEEeccCCccHHhHHHHHHHHHhhCceEEE
Q 020668 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIF 181 (323)
Q Consensus 102 ~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~iiVlNK~DLl~~~~~~~~~~~~~~~g~~vi~ 181 (323)
||||||++..+++++.++++|+|++|+|++.+....+..+...+.++++++|+||+|+.+..+...|.++++..+..+++
T Consensus 1 ~~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~ 80 (171)
T cd01856 1 WFPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKILGNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLF 80 (171)
T ss_pred CCchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHhcCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEE
Confidence 99999999999999999999999999999998887777777777789999999999998766556677777665677899
Q ss_pred ecCcCCCcchhhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEeC
Q 020668 182 SNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG 261 (323)
Q Consensus 182 iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~ 261 (323)
+|++++.|+++|.+.+....+..... ...+..+..++++++|.||||||||+|+|.+...+.+++.||||++.+.+.++
T Consensus 81 iSa~~~~gi~~L~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~ 159 (171)
T cd01856 81 VNAKSGKGVKKLLKAAKKLLKDIEKL-KAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS 159 (171)
T ss_pred EECCCcccHHHHHHHHHHHHHHHhhh-hhcccCCCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec
Confidence 99999999999988887764332211 12223345678999999999999999999998877899999999999988888
Q ss_pred CcEEEEecCCcc
Q 020668 262 KDLEFLDSPGII 273 (323)
Q Consensus 262 ~~~~liDTPGi~ 273 (323)
.++.++|||||.
T Consensus 160 ~~~~~iDtpG~~ 171 (171)
T cd01856 160 PGIYLLDTPGIL 171 (171)
T ss_pred CCEEEEECCCCC
Confidence 889999999984
No 6
>KOG2484 consensus GTPase [General function prediction only]
Probab=100.00 E-value=5.2e-33 Score=262.53 Aligned_cols=214 Identities=35% Similarity=0.540 Sum_probs=172.9
Q ss_pred ccccccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh----CCCCeEEEEeccCCccHHhHHHHHH
Q 020668 95 KSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL----GNRKRILVLNREDMISMADRNAWAT 170 (323)
Q Consensus 95 ~~l~~i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l----~~k~~iiVlNK~DLl~~~~~~~~~~ 170 (323)
.......|++++...|.++++++++.+|+||+|+|||+|++++++++.+++ ++|++|+|+||+||++.+.+++|+.
T Consensus 121 ~~~~~~~~~~~s~kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~ 200 (435)
T KOG2484|consen 121 EEYENALDNEESKKAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLV 200 (435)
T ss_pred HHhhhhccchhhHHHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHH
Confidence 345568899999999999999999999999999999999999999999998 4799999999999999999999999
Q ss_pred HHHhhCceEEEecCcCCCcch--hhh--H-HHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhhcCccccc
Q 020668 171 YFAKQGTKVIFSNGQLGMGTM--KLS--R-LAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPA 245 (323)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~--~L~--~-~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v 245 (323)
|+++.+..++|.++....+.. .+. . +-.+..-.....+...+.....++++|||+|||||||+||+|..++.|.+
T Consensus 201 YLr~~~ptv~fkast~~~~~~~~~~~~s~c~gae~l~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~v 280 (435)
T KOG2484|consen 201 YLRREGPTVAFKASTQMQNSNSKNLQSSVCFGAETLMKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNV 280 (435)
T ss_pred HHHhhCCcceeecccccccccccccccchhhhHHHHHHHhcCcccccccCcceEeeeecCCCCChhHHHHHHHHhccccC
Confidence 999998888887665544431 111 0 00111111122234455567789999999999999999999999999999
Q ss_pred cCCCCceeeEEEEEeCCcEEEEecCCccCCCCCCHHHHHHHHhcccccccCcChHHHHHHHHHH
Q 020668 246 APRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQM 309 (323)
Q Consensus 246 ~~~pgtT~~~~~~~~~~~~~liDTPGi~~~~~~d~~~~~~La~~~~i~~~~~~~~~v~~~ll~~ 309 (323)
++.||.|+..+++++++++.|+|+|||+.++.++.+ +..|.-|-.+..-.++..++..+|-..
T Consensus 281 g~~pGvT~smqeV~Ldk~i~llDsPgiv~~~~~~~~-~~~Lrn~~~i~~~~dp~~~v~~iL~~~ 343 (435)
T KOG2484|consen 281 GNVPGVTRSMQEVKLDKKIRLLDSPGIVPPSIDEKD-ALALRNCIPIGKVADPVTPVSCILKRC 343 (435)
T ss_pred CCCccchhhhhheeccCCceeccCCceeecCCCccc-hhhhhcccccccccCccchHHHHHHHh
Confidence 999999999999999999999999999998887766 566666666665566676666665544
No 7
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.97 E-value=2.2e-30 Score=221.66 Aligned_cols=151 Identities=31% Similarity=0.544 Sum_probs=128.4
Q ss_pred HHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC----CCCeEEEEeccCCccHHhHHHHHHHHHhhC-ceEEEecCcCCC
Q 020668 114 LKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMADRNAWATYFAKQG-TKVIFSNGQLGM 188 (323)
Q Consensus 114 l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~----~k~~iiVlNK~DLl~~~~~~~~~~~~~~~g-~~vi~iSa~~g~ 188 (323)
+++.++++|+|++|+|++.|....+..+.+++. ++|+++|+||+|+++.++...|.+++.+.. ..++++|++++.
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~ 81 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPF 81 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccc
Confidence 567889999999999999998888888888875 389999999999998877777888876543 336789999999
Q ss_pred cchhhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEeCCcEEEEe
Q 020668 189 GTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLD 268 (323)
Q Consensus 189 gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~~~liD 268 (323)
|+++|.+.+.++..... .....+|+++|.||||||||||+|.+.+.+.+++.||+|++.+++.++.+++|+|
T Consensus 82 ~~~~L~~~l~~~~~~~~--------~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~liD 153 (157)
T cd01858 82 GKGSLIQLLRQFSKLHS--------DKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLID 153 (157)
T ss_pred cHHHHHHHHHHHHhhhc--------cccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCCCEEEEE
Confidence 99999888876643210 0124679999999999999999999999999999999999999999888899999
Q ss_pred cCCc
Q 020668 269 SPGI 272 (323)
Q Consensus 269 TPGi 272 (323)
||||
T Consensus 154 tPGi 157 (157)
T cd01858 154 CPGV 157 (157)
T ss_pred CcCC
Confidence 9997
No 8
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=99.97 E-value=3.5e-30 Score=249.68 Aligned_cols=214 Identities=24% Similarity=0.362 Sum_probs=163.0
Q ss_pred CCCCCCCcchhhHhhhcccccCcceeeeeccccccc------ccc-chHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc
Q 020668 66 NSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQ------WYP-GHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH 138 (323)
Q Consensus 66 ~~~~~~~~~~~~~e~e~~~~~~~~~~~~~~~l~~i~------~~P-Gh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~ 138 (323)
.+..+..|.-...-++........++.|+.++...+ .+| .+...++|+++.+++++|+||.|||||+|.-.+.
T Consensus 113 ~iPRRP~W~~~~s~eeLd~~EkeaFlewrr~L~~Lqe~e~l~lTpFErNLE~WRQLWRVlErSDivvqIVDARnPllfr~ 192 (562)
T KOG1424|consen 113 DIPRRPPWTLEMSKEELDRQEKEAFLEWRRKLASLQENEKLVLTPFERNLEIWRQLWRVLERSDIVVQIVDARNPLLFRS 192 (562)
T ss_pred cccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCeeechhhhCHHHHHHHHHHHhhcceEEEEeecCCccccCC
Confidence 344555555555666666667778888888877655 233 4557899999999999999999999999999999
Q ss_pred HHHHHHhC----CCCeEEEEeccCCccHHhHHHHHHHHHhhCceEEEecCcC----CCc--chhh----------hH---
Q 020668 139 PLMDQWLG----NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQL----GMG--TMKL----------SR--- 195 (323)
Q Consensus 139 ~~i~~~l~----~k~~iiVlNK~DLl~~~~~~~~~~~~~~~g~~vi~iSa~~----g~g--i~~L----------~~--- 195 (323)
+.+..|+. .|..++++||+||++..++.+|.+||.+.++.++|.||.. +.+ +.+- ..
T Consensus 193 ~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~SA~~at~~~~~~~~~e~~r~~d~~~~~~~~~~ 272 (562)
T KOG1424|consen 193 PDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFFSALAATEQLESKVLKEDRRSLDGVSRALGAIF 272 (562)
T ss_pred hhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEEecccccccccccchhhhhhcccchhhhccccc
Confidence 99999986 4788999999999999999999999999889999999875 111 1110 00
Q ss_pred ------HHHHhhh---h---hhhhhc---cC----CC-CccceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE
Q 020668 196 ------LAKALAS---D---VNVKRR---SK----GL-LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL 255 (323)
Q Consensus 196 ------~l~~l~~---~---~~~~~~---~~----~~-~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~ 255 (323)
.+.+... + ....+. .. +. -..-++|++||||||||||+||+|.|.+++.|+.+||-|+++
T Consensus 273 ~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~~~~~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHF 352 (562)
T KOG1424|consen 273 VGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTGERYKDVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHF 352 (562)
T ss_pred cccchhhhhhhcccccchhhHHhhhhhhccccCCCCcCCCceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCccee
Confidence 0000000 0 000000 00 00 112488999999999999999999999999999999999999
Q ss_pred EEEEeCCcEEEEecCCccCCCCCC
Q 020668 256 KWVRFGKDLEFLDSPGIIPMRISD 279 (323)
Q Consensus 256 ~~~~~~~~~~liDTPGi~~~~~~d 279 (323)
|.+.+...+.|+||||++.|.+..
T Consensus 353 QTi~ls~~v~LCDCPGLVfPSf~~ 376 (562)
T KOG1424|consen 353 QTIFLSPSVCLCDCPGLVFPSFSP 376 (562)
T ss_pred EEEEcCCCceecCCCCccccCCCc
Confidence 999999999999999999877654
No 9
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.96 E-value=3.9e-30 Score=248.29 Aligned_cols=194 Identities=23% Similarity=0.309 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCeEEEEeccCCccHHhHHHHHHHHHhhC-ceEEEec
Q 020668 107 IAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQG-TKVIFSN 183 (323)
Q Consensus 107 ~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~iiVlNK~DLl~~~~~~~~~~~~~~~g-~~vi~iS 183 (323)
+.+..++....+++||+||+|+|++.+.+..|..++++|+ ++|+++|+||+|....+ .....|.++| .+++++|
T Consensus 70 ~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e---~~~~efyslG~g~~~~IS 146 (444)
T COG1160 70 QELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAE---ELAYEFYSLGFGEPVPIS 146 (444)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhh---hhHHHHHhcCCCCceEee
Confidence 3456677777899999999999999999999999999987 68999999999977333 2334466777 5789999
Q ss_pred CcCCCcchhhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEE---EEEe
Q 020668 184 GQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK---WVRF 260 (323)
Q Consensus 184 a~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~---~~~~ 260 (323)
|.+|.|+.+|++.+.+..+ ........+ ...+++|++||+||||||||+|+|+++.++.+++.||||||.. +.+.
T Consensus 147 A~Hg~Gi~dLld~v~~~l~-~~e~~~~~~-~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~ 224 (444)
T COG1160 147 AEHGRGIGDLLDAVLELLP-PDEEEEEEE-ETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERD 224 (444)
T ss_pred hhhccCHHHHHHHHHhhcC-Ccccccccc-cCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEEC
Confidence 9999999999998877753 211111111 1257999999999999999999999999999999999999953 4444
Q ss_pred CCcEEEEecCCccCC-CCCCHHHHHHHHhcccccccCcChHHHHHHHHHH
Q 020668 261 GKDLEFLDSPGIIPM-RISDQAAAIKLAICDDIGERSYDVADVAAILVQM 309 (323)
Q Consensus 261 ~~~~~liDTPGi~~~-~~~d~~~~~~La~~~~i~~~~~~~~~v~~~ll~~ 309 (323)
++++.++||+|+++. ++ .+..++++..+++ +++..++++.+++|.
T Consensus 225 ~~~~~liDTAGiRrk~ki--~e~~E~~Sv~rt~--~aI~~a~vvllviDa 270 (444)
T COG1160 225 GRKYVLIDTAGIRRKGKI--TESVEKYSVARTL--KAIERADVVLLVIDA 270 (444)
T ss_pred CeEEEEEECCCCCccccc--ccceEEEeehhhH--hHHhhcCEEEEEEEC
Confidence 788999999999853 33 3345566666666 577777777776654
No 10
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.96 E-value=6.5e-28 Score=203.03 Aligned_cols=136 Identities=34% Similarity=0.617 Sum_probs=121.8
Q ss_pred HHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC----CCCeEEEEeccCCccHHhHHHHHHHHHhhCceEEEecCcC
Q 020668 111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQL 186 (323)
Q Consensus 111 ~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~----~k~~iiVlNK~DLl~~~~~~~~~~~~~~~g~~vi~iSa~~ 186 (323)
++++.+.++++|++++|+|++.|.+..+..+.+++. ++|+++|+||+|+++..+...|.+++++.+..++++|+++
T Consensus 2 ~~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~ 81 (141)
T cd01857 2 WRQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALK 81 (141)
T ss_pred HHHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecC
Confidence 467888999999999999999999988888888874 7899999999999987777788888888788899999998
Q ss_pred CCcchhhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEeCCcEEE
Q 020668 187 GMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEF 266 (323)
Q Consensus 187 g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~~~l 266 (323)
+.+ +++++|.||||||||+|+|++...+.++..+|+|++.+.+.++.++.|
T Consensus 82 ~~~-----------------------------~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 132 (141)
T cd01857 82 ENA-----------------------------TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTPTITL 132 (141)
T ss_pred CCc-----------------------------EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCCCEEE
Confidence 764 379999999999999999999888889999999999999999889999
Q ss_pred EecCCccCC
Q 020668 267 LDSPGIIPM 275 (323)
Q Consensus 267 iDTPGi~~~ 275 (323)
+|||||..|
T Consensus 133 ~DtpG~~~p 141 (141)
T cd01857 133 CDCPGLVFP 141 (141)
T ss_pred EECCCcCCC
Confidence 999999864
No 11
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.96 E-value=9e-28 Score=205.20 Aligned_cols=151 Identities=32% Similarity=0.512 Sum_probs=121.7
Q ss_pred CeEEEEEeCCCCCCCCcHHHH-HHh--CCCCeEEEEeccCCccHHhHHHHHHHHHhh-CceEEEecCcCCCcchhhhHHH
Q 020668 122 DVVIEVRDARIPLSTTHPLMD-QWL--GNRKRILVLNREDMISMADRNAWATYFAKQ-GTKVIFSNGQLGMGTMKLSRLA 197 (323)
Q Consensus 122 DlIl~VvDar~~~~~~~~~i~-~~l--~~k~~iiVlNK~DLl~~~~~~~~~~~~~~~-g~~vi~iSa~~g~gi~~L~~~l 197 (323)
|++|+|+|+++|.+..+..+. ..+ .++|+++|+||+|+++.++..+|..++.+. +..++++|+++|.|+++|.+.+
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~~i 80 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKESAF 80 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHHHH
Confidence 799999999999888888777 344 378999999999999887777787666543 4678999999999999998877
Q ss_pred HHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEeCCcEEEEecCCc
Q 020668 198 KALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGI 272 (323)
Q Consensus 198 ~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~~~liDTPGi 272 (323)
.+...+.......+.......+++++|.||||||||+|+|++...+.++..||||++.+++.++.++.|+|||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtPG~ 155 (155)
T cd01849 81 TKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLDNKIKLLDTPGI 155 (155)
T ss_pred HHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEecCCEEEEECCCC
Confidence 543221111111222234567899999999999999999999888889999999999999998889999999997
No 12
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.95 E-value=1.8e-27 Score=207.28 Aligned_cols=143 Identities=38% Similarity=0.655 Sum_probs=112.3
Q ss_pred CeEEEEEeCCCCCCCCcHHHHHH--h--CCCCeEEEEeccCCccHHhHHHHHHHHHhhCceEEEecCcCCC---------
Q 020668 122 DVVIEVRDARIPLSTTHPLMDQW--L--GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGM--------- 188 (323)
Q Consensus 122 DlIl~VvDar~~~~~~~~~i~~~--l--~~k~~iiVlNK~DLl~~~~~~~~~~~~~~~g~~vi~iSa~~g~--------- 188 (323)
|+|++|+|+|.|++..++.+.+. + .++|+++|+||+||++.+...+|.+++.+....+.+.|+....
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQKSV 80 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhhccc
Confidence 89999999999999999999888 3 3789999999999999988999999998765444444433211
Q ss_pred ----------------cchhhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhhcCccccccCCCCce
Q 020668 189 ----------------GTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT 252 (323)
Q Consensus 189 ----------------gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT 252 (323)
|.++|.+.++++. .++....+++++++|+||||||||||+|.+++.+.+++.||+|
T Consensus 81 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T 152 (172)
T cd04178 81 KVEAASADLLRSSVCFGADCLLKLLKNYS--------RNKDIKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVT 152 (172)
T ss_pred ccchhhhhhhhhccccCHHHHHHHHHHHh--------hccccccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeE
Confidence 1111222221111 1122344688999999999999999999999999999999999
Q ss_pred eeEEEEEeCCcEEEEecCCc
Q 020668 253 RVLKWVRFGKDLEFLDSPGI 272 (323)
Q Consensus 253 ~~~~~~~~~~~~~liDTPGi 272 (323)
++.+++.++.++.|+|||||
T Consensus 153 ~~~~~~~~~~~~~l~DtPGi 172 (172)
T cd04178 153 KSMQEVHLDKKVKLLDSPGI 172 (172)
T ss_pred cceEEEEeCCCEEEEECcCC
Confidence 99999999889999999997
No 13
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=99.94 E-value=3.1e-27 Score=222.71 Aligned_cols=167 Identities=30% Similarity=0.506 Sum_probs=139.2
Q ss_pred ccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC----CCCeEEEEeccCCccHHhHHHHHHHHHhhCce
Q 020668 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMADRNAWATYFAKQGTK 178 (323)
Q Consensus 103 ~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~----~k~~iiVlNK~DLl~~~~~~~~~~~~~~~g~~ 178 (323)
-.|...+.+.++.++|+.+|+||.|+|||+|.+++...+.++++ .|+.|+|+|||||++-.-...|...+.+....
T Consensus 196 ~kGQSkRIW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPT 275 (572)
T KOG2423|consen 196 SKGQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPT 275 (572)
T ss_pred hccchhHHHHHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCcc
Confidence 35888899999999999999999999999999999999999997 57899999999999999889999988776433
Q ss_pred EEEe-cCcCCCcchhhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEE
Q 020668 179 VIFS-NGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW 257 (323)
Q Consensus 179 vi~i-Sa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~ 257 (323)
+-|. |-.+..|-..|.+++.++..-.. ....+-|+|||||||||||+||+|..+++|.|+++||-|+-+|+
T Consensus 276 iAfHAsi~nsfGKgalI~llRQf~kLh~--------dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQY 347 (572)
T KOG2423|consen 276 IAFHASINNSFGKGALIQLLRQFAKLHS--------DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQY 347 (572)
T ss_pred eeeehhhcCccchhHHHHHHHHHHhhcc--------CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHH
Confidence 3333 22333455566676666654221 11246799999999999999999999999999999999999999
Q ss_pred EEeCCcEEEEecCCccCCCC
Q 020668 258 VRFGKDLEFLDSPGIIPMRI 277 (323)
Q Consensus 258 ~~~~~~~~liDTPGi~~~~~ 277 (323)
+.+-+.|+||||||++.+.-
T Consensus 348 ItLmkrIfLIDcPGvVyps~ 367 (572)
T KOG2423|consen 348 ITLMKRIFLIDCPGVVYPSS 367 (572)
T ss_pred HHHHhceeEecCCCccCCCC
Confidence 88889999999999997653
No 14
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.94 E-value=1.1e-25 Score=192.07 Aligned_cols=151 Identities=34% Similarity=0.549 Sum_probs=122.2
Q ss_pred HHHH-HHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCeEEEEeccCCccHHhHHHHHHHHHhhCceEEEecCcCCC
Q 020668 112 KELK-DQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGM 188 (323)
Q Consensus 112 ~~l~-~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~iiVlNK~DLl~~~~~~~~~~~~~~~g~~vi~iSa~~g~ 188 (323)
+++. ..++++|++|+|+|++.+....+..+..++. ++|+++|+||+|+.+......|..+....+..++++|++++.
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~~ 82 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKERL 82 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccccc
Confidence 3444 4456699999999999988877777766553 789999999999987655555543334455678999999999
Q ss_pred cchhhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEeCCcEEEEe
Q 020668 189 GTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLD 268 (323)
Q Consensus 189 gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~~~liD 268 (323)
|+++|++.+.++.+.. ....+++++|.||||||||+|+|.+.....+++.+|+|++.+.+..+.++.++|
T Consensus 83 gi~~L~~~l~~~~~~~----------~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D 152 (156)
T cd01859 83 GTKILRRTIKELAKID----------GKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLD 152 (156)
T ss_pred cHHHHHHHHHHHHhhc----------CCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEE
Confidence 9999998887765421 124578999999999999999999887778899999999988888888899999
Q ss_pred cCCc
Q 020668 269 SPGI 272 (323)
Q Consensus 269 TPGi 272 (323)
||||
T Consensus 153 tpGi 156 (156)
T cd01859 153 TPGV 156 (156)
T ss_pred CcCC
Confidence 9997
No 15
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.94 E-value=4.8e-26 Score=200.63 Aligned_cols=150 Identities=31% Similarity=0.384 Sum_probs=117.2
Q ss_pred HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCeEEEEeccCCccHHh----HHHHHH--HHHhhC---ceEE
Q 020668 110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMAD----RNAWAT--YFAKQG---TKVI 180 (323)
Q Consensus 110 ~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~iiVlNK~DLl~~~~----~~~~~~--~~~~~g---~~vi 180 (323)
+...+...++++|+|++|+|++++....+..+.....++|+++|+||+|+++... ...|.+ .+...+ ..++
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 103 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVI 103 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccchhHHHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEE
Confidence 4566677789999999999999887777766644445789999999999985432 223331 112223 2589
Q ss_pred EecCcCCCcchhhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhhcCc--------cccccCCCCce
Q 020668 181 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR--------MCPAAPRPGVT 252 (323)
Q Consensus 181 ~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~--------~~~v~~~pgtT 252 (323)
++||++|.|+++|.+.+.+..+. ..+++++|.||||||||||+|++.. ...++..||||
T Consensus 104 ~vSA~~~~gi~eL~~~l~~~l~~-------------~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT 170 (190)
T cd01855 104 LISAKKGWGVEELINAIKKLAKK-------------GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTT 170 (190)
T ss_pred EEECCCCCCHHHHHHHHHHHhhc-------------CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCee
Confidence 99999999999998887665431 2358999999999999999999753 34678899999
Q ss_pred eeEEEEEeCCcEEEEecCCc
Q 020668 253 RVLKWVRFGKDLEFLDSPGI 272 (323)
Q Consensus 253 ~~~~~~~~~~~~~liDTPGi 272 (323)
++.+.+.++.++.|+|||||
T Consensus 171 ~~~~~~~~~~~~~~~DtPG~ 190 (190)
T cd01855 171 LDLIKIPLGNGKKLYDTPGI 190 (190)
T ss_pred eeeEEEecCCCCEEEeCcCC
Confidence 99999998878999999997
No 16
>PRK13796 GTPase YqeH; Provisional
Probab=99.93 E-value=3.7e-26 Score=221.01 Aligned_cols=190 Identities=24% Similarity=0.338 Sum_probs=143.9
Q ss_pred HHHHHHhhcC-eEEEEEeCCCCCCCCcHHHHHHhCCCCeEEEEeccCCccH----HhHHHHHHHHH-hhCc---eEEEec
Q 020668 113 ELKDQLKLMD-VVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISM----ADRNAWATYFA-KQGT---KVIFSN 183 (323)
Q Consensus 113 ~l~~~i~~aD-lIl~VvDar~~~~~~~~~i~~~l~~k~~iiVlNK~DLl~~----~~~~~~~~~~~-~~g~---~vi~iS 183 (323)
++.+.+...| +|++|+|+.+...+..+.+.++..++++++|+||+||++. +...+|...+. ..|+ .++++|
T Consensus 61 ~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vS 140 (365)
T PRK13796 61 KLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLIS 140 (365)
T ss_pred HHHHhhcccCcEEEEEEECccCCCchhHHHHHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEE
Confidence 3555566555 9999999999888888899888889999999999999863 23455655443 3454 689999
Q ss_pred CcCCCcchhhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhhcC-----ccccccCCCCceeeEEEE
Q 020668 184 GQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR-----RMCPAAPRPGVTRVLKWV 258 (323)
Q Consensus 184 a~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~-----~~~~v~~~pgtT~~~~~~ 258 (323)
|+++.|+++|.+.+.++... .++++||.||||||||||+|++. +...++..||||++.+++
T Consensus 141 Ak~g~gI~eL~~~I~~~~~~--------------~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~ 206 (365)
T PRK13796 141 AQKGHGIDELLEAIEKYREG--------------RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEI 206 (365)
T ss_pred CCCCCCHHHHHHHHHHhcCC--------------CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEE
Confidence 99999999998887654321 25899999999999999999854 345689999999999999
Q ss_pred EeCCcEEEEecCCccCC-CCC---CHHHHHHHHhcccccccCcChHHHHHHHHHHHhcCCCC
Q 020668 259 RFGKDLEFLDSPGIIPM-RIS---DQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTV 316 (323)
Q Consensus 259 ~~~~~~~liDTPGi~~~-~~~---d~~~~~~La~~~~i~~~~~~~~~v~~~ll~~L~~~~~~ 316 (323)
.++.+..|+|||||... ++. +.+....+...+.++++++...+-..+++..|.|.+..
T Consensus 207 ~l~~~~~l~DTPGi~~~~~~~~~l~~~~l~~~~p~k~i~p~~~~l~~gq~l~~ggl~r~d~~ 268 (365)
T PRK13796 207 PLDDGSFLYDTPGIIHRHQMAHYLSAKDLKIISPKKEIKPKTYQLNEEQTLFLGGLARFDYV 268 (365)
T ss_pred EcCCCcEEEECCCccccchhhhcCCHHHHhhcCCCcccCceEEEECCCCEEEEeeEEEEEEe
Confidence 99888899999999743 221 33444455555667777776666556666666666553
No 17
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.92 E-value=1.9e-24 Score=208.75 Aligned_cols=154 Identities=26% Similarity=0.341 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCeEEEEeccCCccHH----hHHHHHH-HHHhhCc---eE
Q 020668 108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA----DRNAWAT-YFAKQGT---KV 179 (323)
Q Consensus 108 ~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~iiVlNK~DLl~~~----~~~~~~~-~~~~~g~---~v 179 (323)
.++.+.+......+|+|++|+|+.+...+..+++.+++.++++++|+||+||++.. ...+|.. ++++.+. .+
T Consensus 51 e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i 130 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDI 130 (360)
T ss_pred HHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcE
Confidence 34556555666889999999999999999999999988899999999999998643 3455553 3445554 58
Q ss_pred EEecCcCCCcchhhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhhcCc-----cccccCCCCceee
Q 020668 180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR-----MCPAAPRPGVTRV 254 (323)
Q Consensus 180 i~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~-----~~~v~~~pgtT~~ 254 (323)
+++||++|.|+++|.+.+.++.. ..++++||.||||||||||+|++.. .+.++..||||++
T Consensus 131 ~~vSAk~g~gv~eL~~~l~~~~~--------------~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~ 196 (360)
T TIGR03597 131 ILVSAKKGNGIDELLDKIKKARN--------------KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLD 196 (360)
T ss_pred EEecCCCCCCHHHHHHHHHHHhC--------------CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEee
Confidence 89999999999999888765532 1358999999999999999999753 4678999999999
Q ss_pred EEEEEeCCcEEEEecCCccCC
Q 020668 255 LKWVRFGKDLEFLDSPGIIPM 275 (323)
Q Consensus 255 ~~~~~~~~~~~liDTPGi~~~ 275 (323)
...+.++.++.|+|||||...
T Consensus 197 ~~~~~~~~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 197 LIEIPLDDGHSLYDTPGIINS 217 (360)
T ss_pred EEEEEeCCCCEEEECCCCCCh
Confidence 998888888899999999853
No 18
>PRK12289 GTPase RsgA; Reviewed
Probab=99.92 E-value=1.4e-24 Score=208.55 Aligned_cols=142 Identities=23% Similarity=0.316 Sum_probs=118.1
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcHHHHHHhC-----CCCeEEEEeccCCccHHhHHHHHHHHHhhCceEEEecCcCCCcch
Q 020668 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTM 191 (323)
Q Consensus 117 ~i~~aDlIl~VvDar~~~~~~~~~i~~~l~-----~k~~iiVlNK~DLl~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~ 191 (323)
.++++|.|++|+|+.++.. ....+.+++. ++|+++|+||+||++..+...|.+.+...|+.++++|++++.|++
T Consensus 86 ~~aNvD~vLlV~d~~~p~~-~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~GI~ 164 (352)
T PRK12289 86 PVANADQILLVFALAEPPL-DPWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIGLE 164 (352)
T ss_pred hhhcCCEEEEEEECCCCCC-CHHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCCHH
Confidence 4799999999999986542 2224445442 789999999999998777778888888888999999999999998
Q ss_pred hhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhhcCccccccCCCC-------ceeeEEEEEeCCcE
Q 020668 192 KLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKWVRFGKDL 264 (323)
Q Consensus 192 ~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pg-------tT~~~~~~~~~~~~ 264 (323)
+|.+.+.. . .++|+|.||||||||||+|++.....++..+| ||++.+++.+..+.
T Consensus 165 eL~~~L~~---k---------------i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~ 226 (352)
T PRK12289 165 ALLEQLRN---K---------------ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG 226 (352)
T ss_pred HHhhhhcc---c---------------eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc
Confidence 87766431 1 26999999999999999999988888888887 99999999987667
Q ss_pred EEEecCCccCCCC
Q 020668 265 EFLDSPGIIPMRI 277 (323)
Q Consensus 265 ~liDTPGi~~~~~ 277 (323)
+|+|||||..+.+
T Consensus 227 ~liDTPG~~~~~l 239 (352)
T PRK12289 227 LLADTPGFNQPDL 239 (352)
T ss_pred EEEeCCCcccccc
Confidence 8999999987665
No 19
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.90 E-value=1.2e-23 Score=193.21 Aligned_cols=143 Identities=22% Similarity=0.285 Sum_probs=113.3
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----CCCCeEEEEeccCCccHHhH-HHHHHHHHhhCceEEEecCcCCCcc
Q 020668 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADR-NAWATYFAKQGTKVIFSNGQLGMGT 190 (323)
Q Consensus 117 ~i~~aDlIl~VvDar~~~~~~~~~i~~~l-----~~k~~iiVlNK~DLl~~~~~-~~~~~~~~~~g~~vi~iSa~~g~gi 190 (323)
.++++|.+++|+|+++|..+.+. +.+|+ .+.++++|+||+||.+..+. .++.+.+.+.++.++.+||++|.|+
T Consensus 33 ~~~n~D~viiV~d~~~p~~s~~~-l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAktg~gi 111 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPELSLNQ-LDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDGL 111 (245)
T ss_pred ccccCCEEEEEEECCCCCCCHHH-HHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCCchhH
Confidence 46999999999999987654432 44443 37899999999999865443 3667777778889999999999999
Q ss_pred hhhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhhcCccccccCCC-------CceeeEEEEEeCCc
Q 020668 191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-------GVTRVLKWVRFGKD 263 (323)
Q Consensus 191 ~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~p-------gtT~~~~~~~~~~~ 263 (323)
++|.+.+.. + .++|+|.||||||||||+|++.....++..+ +||++.+++.+ .+
T Consensus 112 ~eLf~~l~~---~---------------~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-~~ 172 (245)
T TIGR00157 112 KELIEALQN---R---------------ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-HG 172 (245)
T ss_pred HHHHhhhcC---C---------------EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-CC
Confidence 888765431 1 3789999999999999999998776666543 49999999998 46
Q ss_pred EEEEecCCccCCCCCC
Q 020668 264 LEFLDSPGIIPMRISD 279 (323)
Q Consensus 264 ~~liDTPGi~~~~~~d 279 (323)
.+|+|||||....+.+
T Consensus 173 ~~liDtPG~~~~~l~~ 188 (245)
T TIGR00157 173 GLIADTPGFNEFGLWH 188 (245)
T ss_pred cEEEeCCCccccCCCC
Confidence 6899999999776644
No 20
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.88 E-value=9e-23 Score=200.98 Aligned_cols=170 Identities=25% Similarity=0.264 Sum_probs=130.4
Q ss_pred cccccch-------HHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCeEEEEeccCCccHHhHHHHHH
Q 020668 100 VQWYPGH-------IAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWAT 170 (323)
Q Consensus 100 i~~~PGh-------~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~iiVlNK~DLl~~~~~~~~~~ 170 (323)
+-++||+ +....+++...++.+|++++|+|++.+.+..+..+.+++. ++|+++|+||+|+.+.... ..
T Consensus 51 liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~---~~ 127 (429)
T TIGR03594 51 LIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAV---AA 127 (429)
T ss_pred EEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccccc---HH
Confidence 4567775 3456677777889999999999999988888888888876 7899999999998765431 12
Q ss_pred HHHhhCc-eEEEecCcCCCcchhhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhhcCccccccCCC
Q 020668 171 YFAKQGT-KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP 249 (323)
Q Consensus 171 ~~~~~g~-~vi~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~p 249 (323)
.+.++|. +++++||++|.|+.+|.+.+......... ........++|+++|.||||||||+|+|++.....+++.|
T Consensus 128 ~~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~~~~---~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~ 204 (429)
T TIGR03594 128 EFYSLGFGEPIPISAEHGRGIGDLLDAILELLPEEEE---EEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIA 204 (429)
T ss_pred HHHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCcccc---cccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCC
Confidence 2445664 78999999999999998877665432111 0111124689999999999999999999998888889999
Q ss_pred CceeeEEEEE---eCCcEEEEecCCccCC
Q 020668 250 GVTRVLKWVR---FGKDLEFLDSPGIIPM 275 (323)
Q Consensus 250 gtT~~~~~~~---~~~~~~liDTPGi~~~ 275 (323)
|||++..... .+..+.++||||+...
T Consensus 205 gtt~~~~~~~~~~~~~~~~liDT~G~~~~ 233 (429)
T TIGR03594 205 GTTRDSIDIPFERNGKKYLLIDTAGIRRK 233 (429)
T ss_pred CceECcEeEEEEECCcEEEEEECCCcccc
Confidence 9999854322 2557999999999743
No 21
>PRK12288 GTPase RsgA; Reviewed
Probab=99.88 E-value=6e-22 Score=190.15 Aligned_cols=142 Identities=23% Similarity=0.323 Sum_probs=111.5
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----CCCCeEEEEeccCCccHHh---HHHHHHHHHhhCceEEEecCcCCC
Q 020668 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD---RNAWATYFAKQGTKVIFSNGQLGM 188 (323)
Q Consensus 117 ~i~~aDlIl~VvDar~~~~~~~~~i~~~l-----~~k~~iiVlNK~DLl~~~~---~~~~~~~~~~~g~~vi~iSa~~g~ 188 (323)
.+.++|.+++|.+.. +.... ..+..|+ .+++.++|+||+||++..+ ..++.+.+...++.++++|++++.
T Consensus 117 iaANvD~vlIV~s~~-p~~s~-~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 117 IAANIDQIVIVSAVL-PELSL-NIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEEccEEEEEEeCC-CCCCH-HHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 468999998888864 32221 2334443 2689999999999987542 456667777788899999999999
Q ss_pred cchhhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhhcCccccccCCCC-------ceeeEEEEEeC
Q 020668 189 GTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKWVRFG 261 (323)
Q Consensus 189 gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pg-------tT~~~~~~~~~ 261 (323)
|+++|.+.+.. . .++|+|.||||||||||+|+++....++.+++ ||+..+++.+.
T Consensus 195 GideL~~~L~~---k---------------i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~ 256 (347)
T PRK12288 195 GLEELEAALTG---R---------------ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFP 256 (347)
T ss_pred CHHHHHHHHhh---C---------------CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEec
Confidence 99988776532 1 16899999999999999999988888887764 89999999997
Q ss_pred CcEEEEecCCccCCCCC
Q 020668 262 KDLEFLDSPGIIPMRIS 278 (323)
Q Consensus 262 ~~~~liDTPGi~~~~~~ 278 (323)
.+..|+|||||....+.
T Consensus 257 ~~~~liDTPGir~~~l~ 273 (347)
T PRK12288 257 HGGDLIDSPGVREFGLW 273 (347)
T ss_pred CCCEEEECCCCCcccCC
Confidence 77789999999876554
No 22
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=2.4e-22 Score=198.50 Aligned_cols=169 Identities=25% Similarity=0.246 Sum_probs=125.6
Q ss_pred cccccchHH-------HHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCeEEEEeccCCccHHhHHHHHH
Q 020668 100 VQWYPGHIA-------KTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWAT 170 (323)
Q Consensus 100 i~~~PGh~~-------k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~iiVlNK~DLl~~~~~~~~~~ 170 (323)
+.++||+.. ...++....+..+|++|+|+|++.+.+..+..+..++. ++|+++|+||+|+.+..+ . ..
T Consensus 53 liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~~--~-~~ 129 (435)
T PRK00093 53 LIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEEA--D-AY 129 (435)
T ss_pred EEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccchh--h-HH
Confidence 455677632 23444556789999999999999988887777777775 789999999999765321 1 12
Q ss_pred HHHhhCc-eEEEecCcCCCcchhhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhhcCccccccCCC
Q 020668 171 YFAKQGT-KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP 249 (323)
Q Consensus 171 ~~~~~g~-~vi~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~p 249 (323)
.+.+++. .++++||++|.|+.+|.+.+......... .......++|+++|.||+|||||+|+|++.....+++.|
T Consensus 130 ~~~~lg~~~~~~iSa~~g~gv~~l~~~I~~~~~~~~~----~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~ 205 (435)
T PRK00093 130 EFYSLGLGEPYPISAEHGRGIGDLLDAILEELPEEEE----EDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIA 205 (435)
T ss_pred HHHhcCCCCCEEEEeeCCCCHHHHHHHHHhhCCcccc----ccccccceEEEEECCCCCCHHHHHHHHhCCCceeecCCC
Confidence 2345554 48999999999999988877653221110 001234689999999999999999999999888899999
Q ss_pred CceeeEEEE---EeCCcEEEEecCCccCC
Q 020668 250 GVTRVLKWV---RFGKDLEFLDSPGIIPM 275 (323)
Q Consensus 250 gtT~~~~~~---~~~~~~~liDTPGi~~~ 275 (323)
|||++.... ..+..+.|+||||+...
T Consensus 206 gtt~~~~~~~~~~~~~~~~lvDT~G~~~~ 234 (435)
T PRK00093 206 GTTRDSIDTPFERDGQKYTLIDTAGIRRK 234 (435)
T ss_pred CceEEEEEEEEEECCeeEEEEECCCCCCC
Confidence 999996432 23567999999999753
No 23
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.87 E-value=2e-22 Score=188.37 Aligned_cols=130 Identities=18% Similarity=0.285 Sum_probs=115.6
Q ss_pred CCCCCCCCCCCCcchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC---C
Q 020668 61 SWHGGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL---S 135 (323)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~---~ 135 (323)
.-+++.+|++.+.||+++||||++++|++|+||.+++|+ |+++||| +++.|+|...++.||++|+++|||.+. +
T Consensus 49 ~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~KRkFIiADTPGH-eQYTRNMaTGASTadlAIlLVDAR~Gvl~QT 127 (431)
T COG2895 49 GTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTEKRKFIIADTPGH-EQYTRNMATGASTADLAILLVDARKGVLEQT 127 (431)
T ss_pred cCCCCccchhhhhhhhHHHHhcCceEEEEeeecccccceEEEecCCcH-HHHhhhhhcccccccEEEEEEecchhhHHHh
Confidence 346789999999999999999999999999999999999 9999999 999999999999999999999999886 7
Q ss_pred CCcHHHHHHhCCCCeEEEEeccCCccHHh------HHHHHHHHHhhC---ceEEEecCcCCCcch
Q 020668 136 TTHPLMDQWLGNRKRILVLNREDMISMAD------RNAWATYFAKQG---TKVIFSNGQLGMGTM 191 (323)
Q Consensus 136 ~~~~~i~~~l~~k~~iiVlNK~DLl~~~~------~~~~~~~~~~~g---~~vi~iSa~~g~gi~ 191 (323)
.+|..|..+|+.+++++++|||||++.++ ..++..+..+++ ..++|+||..|+|+.
T Consensus 128 rRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 128 RRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHhCCcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 78999999999999999999999998764 233444455566 468999999999875
No 24
>PRK00098 GTPase RsgA; Reviewed
Probab=99.87 E-value=1.2e-21 Score=184.86 Aligned_cols=141 Identities=23% Similarity=0.292 Sum_probs=110.9
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----CCCCeEEEEeccCCc-cHHhHHHHHHHHHhhCceEEEecCcCCCcc
Q 020668 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMI-SMADRNAWATYFAKQGTKVIFSNGQLGMGT 190 (323)
Q Consensus 117 ~i~~aDlIl~VvDar~~~~~~~~~i~~~l-----~~k~~iiVlNK~DLl-~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi 190 (323)
.++++|++++|+|+.++..... .+.+++ .++|+++|+||+||. +......|.+.+++.++.++++|++++.|+
T Consensus 77 iaaniD~vllV~d~~~p~~~~~-~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi 155 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTD-LLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEGL 155 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHH-HHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccH
Confidence 4799999999999987644322 233332 268999999999997 334445677777777889999999999999
Q ss_pred hhhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhhcCccccccCCC-------CceeeEEEEEeCCc
Q 020668 191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-------GVTRVLKWVRFGKD 263 (323)
Q Consensus 191 ~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~p-------gtT~~~~~~~~~~~ 263 (323)
++|.+.+. . ..++|+|.||||||||||+|++.....++..+ +||+..+++.+..+
T Consensus 156 ~~L~~~l~---g---------------k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~ 217 (298)
T PRK00098 156 DELKPLLA---G---------------KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG 217 (298)
T ss_pred HHHHhhcc---C---------------ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC
Confidence 88776542 1 13799999999999999999998777777665 39999999888777
Q ss_pred EEEEecCCccCCC
Q 020668 264 LEFLDSPGIIPMR 276 (323)
Q Consensus 264 ~~liDTPGi~~~~ 276 (323)
.+|+|||||....
T Consensus 218 ~~~~DtpG~~~~~ 230 (298)
T PRK00098 218 GLLIDTPGFSSFG 230 (298)
T ss_pred cEEEECCCcCccC
Confidence 8999999998543
No 25
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.86 E-value=3.2e-21 Score=181.03 Aligned_cols=142 Identities=21% Similarity=0.250 Sum_probs=110.0
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----CCCCeEEEEeccCCccHHhHHHHHHHHHhhCceEEEecCcCCCcc
Q 020668 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGT 190 (323)
Q Consensus 116 ~~i~~aDlIl~VvDar~~~~~~~~~i~~~l-----~~k~~iiVlNK~DLl~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi 190 (323)
..++++|++++|+|++.+..+ ...+.+++ .++|+++|+||+||.+..+...|..++.+.++.++++|++++.|+
T Consensus 74 ~i~anvD~vllV~d~~~p~~s-~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi 152 (287)
T cd01854 74 VIAANVDQLVIVVSLNEPFFN-PRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGL 152 (287)
T ss_pred eEEEeCCEEEEEEEcCCCCCC-HHHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccH
Confidence 347999999999999887622 12334443 378999999999998765545566666667889999999999999
Q ss_pred hhhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhhcCccccccC-------CCCceeeEEEEEeCCc
Q 020668 191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP-------RPGVTRVLKWVRFGKD 263 (323)
Q Consensus 191 ~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~-------~pgtT~~~~~~~~~~~ 263 (323)
++|...+.. -.++++|.+|||||||||+|++.....++. ..+||++.+++.+..+
T Consensus 153 ~~L~~~L~~------------------k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~ 214 (287)
T cd01854 153 DELREYLKG------------------KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG 214 (287)
T ss_pred HHHHhhhcc------------------ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC
Confidence 887765431 138999999999999999999876555443 3459999999998767
Q ss_pred EEEEecCCccCCC
Q 020668 264 LEFLDSPGIIPMR 276 (323)
Q Consensus 264 ~~liDTPGi~~~~ 276 (323)
.+|+||||+....
T Consensus 215 ~~liDtPG~~~~~ 227 (287)
T cd01854 215 GLLIDTPGFREFG 227 (287)
T ss_pred CEEEECCCCCccC
Confidence 7899999997543
No 26
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=6.3e-21 Score=190.53 Aligned_cols=169 Identities=24% Similarity=0.205 Sum_probs=123.2
Q ss_pred cccccchH-------HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCeEEEEeccCCccHHhHHHHHH
Q 020668 100 VQWYPGHI-------AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWAT 170 (323)
Q Consensus 100 i~~~PGh~-------~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~iiVlNK~DLl~~~~~~~~~~ 170 (323)
+-++||+. ..+.++....+..+|++|+|+|++.+.+..+..+..++. ++|+++|+||+|+..... +..+
T Consensus 90 l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~--~~~~ 167 (472)
T PRK03003 90 VVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEA--DAAA 167 (472)
T ss_pred EEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccch--hhHH
Confidence 45667752 234555666789999999999999888777777777765 689999999999864321 1112
Q ss_pred HHHhhCc-eEEEecCcCCCcchhhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhhcCccccccCCC
Q 020668 171 YFAKQGT-KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP 249 (323)
Q Consensus 171 ~~~~~g~-~vi~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~p 249 (323)
+..++. .++++||++|.|+++|.+.+.+...+... ........++|+++|.||||||||+|+|++.....+++.|
T Consensus 168 -~~~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~~~~---~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~ 243 (472)
T PRK03003 168 -LWSLGLGEPHPVSALHGRGVGDLLDAVLAALPEVPR---VGSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVA 243 (472)
T ss_pred -HHhcCCCCeEEEEcCCCCCcHHHHHHHHhhcccccc---cccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCC
Confidence 223342 46799999999999998877654432111 1111234689999999999999999999998877789999
Q ss_pred CceeeEEE--EE-eCCcEEEEecCCccC
Q 020668 250 GVTRVLKW--VR-FGKDLEFLDSPGIIP 274 (323)
Q Consensus 250 gtT~~~~~--~~-~~~~~~liDTPGi~~ 274 (323)
|||++... +. .+..+.|+||||+..
T Consensus 244 gtT~d~~~~~~~~~~~~~~l~DTaG~~~ 271 (472)
T PRK03003 244 GTTVDPVDSLIELGGKTWRFVDTAGLRR 271 (472)
T ss_pred CccCCcceEEEEECCEEEEEEECCCccc
Confidence 99998532 22 255688999999863
No 27
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.84 E-value=4.8e-20 Score=192.43 Aligned_cols=171 Identities=25% Similarity=0.216 Sum_probs=124.7
Q ss_pred cccccchH-------HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCeEEEEeccCCccHHhHHHHHH
Q 020668 100 VQWYPGHI-------AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWAT 170 (323)
Q Consensus 100 i~~~PGh~-------~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~iiVlNK~DLl~~~~~~~~~~ 170 (323)
+-++||.. ..+.+++...++.+|++|+|+|++.+++..+..+.+++. ++|+++|+||+|+...... ..
T Consensus 327 liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~---~~ 403 (712)
T PRK09518 327 LVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEYD---AA 403 (712)
T ss_pred EEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchhh---HH
Confidence 44667742 345666677789999999999999888877777777775 7899999999998654221 12
Q ss_pred HHHhhC-ceEEEecCcCCCcchhhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhhcCccccccCCC
Q 020668 171 YFAKQG-TKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP 249 (323)
Q Consensus 171 ~~~~~g-~~vi~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~p 249 (323)
.+..++ ..++++||++|.|+.+|++.+.+........ ...-.....++|+++|.||||||||+|+|++.+...+++.|
T Consensus 404 ~~~~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~~~~~-~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~ 482 (712)
T PRK09518 404 EFWKLGLGEPYPISAMHGRGVGDLLDEALDSLKVAEKT-SGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLA 482 (712)
T ss_pred HHHHcCCCCeEEEECCCCCCchHHHHHHHHhccccccc-ccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCC
Confidence 233334 2468999999999999988766554321100 00000123579999999999999999999998877789999
Q ss_pred CceeeEEE--E-EeCCcEEEEecCCccC
Q 020668 250 GVTRVLKW--V-RFGKDLEFLDSPGIIP 274 (323)
Q Consensus 250 gtT~~~~~--~-~~~~~~~liDTPGi~~ 274 (323)
|||++... + ..+..+.|+||||+..
T Consensus 483 gtT~d~~~~~~~~~~~~~~liDTaG~~~ 510 (712)
T PRK09518 483 GTTRDPVDEIVEIDGEDWLFIDTAGIKR 510 (712)
T ss_pred CCCcCcceeEEEECCCEEEEEECCCccc
Confidence 99999532 2 2356788999999863
No 28
>COG1162 Predicted GTPases [General function prediction only]
Probab=99.82 E-value=1.4e-19 Score=168.34 Aligned_cols=141 Identities=24% Similarity=0.316 Sum_probs=110.3
Q ss_pred HhhcCeEEEEEeCCCCCCCCcHHHHHHh-----CCCCeEEEEeccCCccHHhHH--HHHHHHHhhCceEEEecCcCCCcc
Q 020668 118 LKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADRN--AWATYFAKQGTKVIFSNGQLGMGT 190 (323)
Q Consensus 118 i~~aDlIl~VvDar~~~~~~~~~i~~~l-----~~k~~iiVlNK~DLl~~~~~~--~~~~~~~~~g~~vi~iSa~~g~gi 190 (323)
+.+.|-+++|+-+..|..+. ..+.++| .+...+||+||+||++..+.. ++...+.+.|+.++++|+++++|+
T Consensus 77 v~n~d~~iiIvs~~~P~~~~-~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~~ 155 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNT-NLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGL 155 (301)
T ss_pred ccccceEEEEEeccCCCCCH-HHHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcccH
Confidence 35688888888887765433 2344443 377889999999999877654 566778889999999999999999
Q ss_pred hhhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhhcCccccccCC-------CCceeeEEEEEeCCc
Q 020668 191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPR-------PGVTRVLKWVRFGKD 263 (323)
Q Consensus 191 ~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~-------pgtT~~~~~~~~~~~ 263 (323)
++|.+.+. .+ ..+|+|.+|||||||||+|.+.....|+.+ -+||+....+.+..+
T Consensus 156 ~~l~~~l~---~~---------------~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~g 217 (301)
T COG1162 156 EELAELLA---GK---------------ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGG 217 (301)
T ss_pred HHHHHHhc---CC---------------eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCC
Confidence 88776632 21 268999999999999999998665555443 369999999999878
Q ss_pred EEEEecCCccCCCC
Q 020668 264 LEFLDSPGIIPMRI 277 (323)
Q Consensus 264 ~~liDTPGi~~~~~ 277 (323)
.+|+|||||....+
T Consensus 218 G~iiDTPGf~~~~l 231 (301)
T COG1162 218 GWIIDTPGFRSLGL 231 (301)
T ss_pred CEEEeCCCCCccCc
Confidence 88999999987666
No 29
>PRK01889 GTPase RsgA; Reviewed
Probab=99.72 E-value=1.8e-17 Score=160.03 Aligned_cols=144 Identities=19% Similarity=0.263 Sum_probs=103.8
Q ss_pred HhhcCeEEEEEeCCCCCCCCcHHHHHHh-----CCCCeEEEEeccCCccHHh-HHHHHHHHHhhCceEEEecCcCCCcch
Q 020668 118 LKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD-RNAWATYFAKQGTKVIFSNGQLGMGTM 191 (323)
Q Consensus 118 i~~aDlIl~VvDar~~~~~~~~~i~~~l-----~~k~~iiVlNK~DLl~~~~-~~~~~~~~~~~g~~vi~iSa~~g~gi~ 191 (323)
++++|.+++|+++..++.. ..+.+++ .+.+.++|+||+||++..+ ..++...+ ..+++++++|++++.|++
T Consensus 110 aANvD~vliV~s~~p~~~~--~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~-~~g~~Vi~vSa~~g~gl~ 186 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNL--RRIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEAL-APGVPVLAVSALDGEGLD 186 (356)
T ss_pred EEeCCEEEEEEecCCCCCh--hHHHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHh-CCCCcEEEEECCCCccHH
Confidence 6899999999998633322 2444443 3678899999999987532 22233333 457899999999999998
Q ss_pred hhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhhcCccccccCC-------CCceeeEEEEEeCCcE
Q 020668 192 KLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPR-------PGVTRVLKWVRFGKDL 264 (323)
Q Consensus 192 ~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~-------pgtT~~~~~~~~~~~~ 264 (323)
+|...+.. .-+++|+|.+|+|||||+|.|.+.....++.. .+||+..+++.+..+.
T Consensus 187 ~L~~~L~~-----------------g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~ 249 (356)
T PRK01889 187 VLAAWLSG-----------------GKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGG 249 (356)
T ss_pred HHHHHhhc-----------------CCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCC
Confidence 88776531 12489999999999999999998665554432 2477777777877677
Q ss_pred EEEecCCccCCCCCCHH
Q 020668 265 EFLDSPGIIPMRISDQA 281 (323)
Q Consensus 265 ~liDTPGi~~~~~~d~~ 281 (323)
.++||||+....+.+.+
T Consensus 250 ~l~DtpG~~~~~l~~~~ 266 (356)
T PRK01889 250 LLIDTPGMRELQLWDAE 266 (356)
T ss_pred eecCCCchhhhcccCch
Confidence 89999999766555543
No 30
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.64 E-value=3.4e-16 Score=134.35 Aligned_cols=95 Identities=25% Similarity=0.326 Sum_probs=70.2
Q ss_pred HHHHHHHHhhCceEEEecCcCCCcchhhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhhcCccccc
Q 020668 166 NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPA 245 (323)
Q Consensus 166 ~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v 245 (323)
++|.+.|++.|++++.+|+++++|+++|++.++. + .++|+|.+|||||||||+|++.....+
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~---k---------------~~vl~G~SGvGKSSLiN~L~~~~~~~t 63 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKG---K---------------TSVLLGQSGVGKSSLINALLPEAKQKT 63 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTT---S---------------EEEEECSTTSSHHHHHHHHHTSS----
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcC---C---------------EEEEECCCCCCHHHHHHHHHhhcchhh
Confidence 4678889999999999999999999988776432 1 379999999999999999998765555
Q ss_pred cC-------CCCceeeEEEEEeCCcEEEEecCCccCCCCC
Q 020668 246 AP-------RPGVTRVLKWVRFGKDLEFLDSPGIIPMRIS 278 (323)
Q Consensus 246 ~~-------~pgtT~~~~~~~~~~~~~liDTPGi~~~~~~ 278 (323)
+. .-+||+..+++.+..+..|||||||....+.
T Consensus 64 ~~is~~~~rGkHTTt~~~l~~l~~g~~iIDTPGf~~~~l~ 103 (161)
T PF03193_consen 64 GEISEKTGRGKHTTTHRELFPLPDGGYIIDTPGFRSFGLW 103 (161)
T ss_dssp S--------------SEEEEEETTSEEEECSHHHHT--GC
T ss_pred hhhhcccCCCcccCCCeeEEecCCCcEEEECCCCCccccc
Confidence 43 2369999999999889999999999876655
No 31
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.51 E-value=4.6e-15 Score=144.36 Aligned_cols=61 Identities=36% Similarity=0.497 Sum_probs=53.8
Q ss_pred CccceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe---CCcEEEEecCCccC
Q 020668 214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (323)
Q Consensus 214 ~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~liDTPGi~~ 274 (323)
...+++++++|.||||||||+|+|+++.++.|++.||||||+...++ |-.+.|+||+|++.
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRe 277 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRE 277 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCccc
Confidence 44578999999999999999999999999999999999999755443 55688999999984
No 32
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.47 E-value=1.3e-13 Score=128.91 Aligned_cols=71 Identities=28% Similarity=0.481 Sum_probs=57.2
Q ss_pred CccceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe---CCcEEEEecCCccCCCCCCHHHHHH
Q 020668 214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMRISDQAAAIK 285 (323)
Q Consensus 214 ~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~liDTPGi~~~~~~d~~~~~~ 285 (323)
.+...+|.+.|+||||||||+++|.+.+. .++++|+||+.+..-++ +..+++|||||+++..+++.+.-++
T Consensus 165 dp~~pTivVaG~PNVGKSSlv~~lT~Akp-EvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~ 238 (346)
T COG1084 165 DPDLPTIVVAGYPNVGKSSLVRKLTTAKP-EVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIER 238 (346)
T ss_pred CCCCCeEEEecCCCCcHHHHHHHHhcCCC-ccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHH
Confidence 34567899999999999999999998764 89999999999876655 3468999999999766555444343
No 33
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.47 E-value=9.5e-14 Score=118.92 Aligned_cols=63 Identities=33% Similarity=0.550 Sum_probs=47.0
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEE--EEe-CCcEEEEecCCccCCCCCCHH
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIPMRISDQA 281 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~~~~liDTPGi~~~~~~d~~ 281 (323)
++|+++|.||||||||+|+|++.+ ..+++.||+|.+... +.. +..+.++||||+........+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~e 66 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEE 66 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcH
Confidence 469999999999999999999988 689999999999654 332 567999999999865433333
No 34
>COG1159 Era GTPase [General function prediction only]
Probab=99.42 E-value=2.2e-13 Score=126.13 Aligned_cols=58 Identities=34% Similarity=0.614 Sum_probs=50.3
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE-EEEEe--CCcEEEEecCCccCCC
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRF--GKDLEFLDSPGIIPMR 276 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~-~~~~~--~~~~~liDTPGi~~~~ 276 (323)
-|++||+||||||||+|+|+|.+...+|+.|.|||+. +.+.- ..++.++|||||..++
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk 68 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPK 68 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcc
Confidence 4899999999999999999999999999999999994 33333 4579999999998664
No 35
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.41 E-value=6e-14 Score=136.32 Aligned_cols=58 Identities=40% Similarity=0.603 Sum_probs=51.0
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEE---EEeCCcEEEEecCCccCC
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW---VRFGKDLEFLDSPGIIPM 275 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~---~~~~~~~~liDTPGi~~~ 275 (323)
..|++||+||||||||+|+|.++..+.|+++||+|||... .+.+..+.++||+|+...
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~ 64 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDG 64 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcC
Confidence 3599999999999999999999999999999999999643 344778999999999853
No 36
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=5.9e-14 Score=136.72 Aligned_cols=60 Identities=37% Similarity=0.527 Sum_probs=52.9
Q ss_pred ccceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe---CCcEEEEecCCccC
Q 020668 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (323)
Q Consensus 215 ~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~liDTPGi~~ 274 (323)
..+++|+++|.||||||||+|+|.++.+..|++.||||||.....+ |..++|+||+|++.
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe 328 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIRE 328 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEecccccc
Confidence 4568999999999999999999999999999999999999643332 66799999999996
No 37
>COG2262 HflX GTPases [General function prediction only]
Probab=99.37 E-value=4e-14 Score=135.76 Aligned_cols=180 Identities=22% Similarity=0.251 Sum_probs=98.6
Q ss_pred CCcchhhHhhhccc---ccCcceeeeeccccccccccchHHHHHHHHH-HHHhhcCeEEEEEeCCCCCCCCc--HHHHHH
Q 020668 71 NGSIEAYEEECDWA---DLDADLYYWTKSLRPVQWYPGHIAKTEKELK-DQLKLMDVVIEVRDARIPLSTTH--PLMDQW 144 (323)
Q Consensus 71 ~~~~~~~~e~e~~~---~~~~~~~~~~~~l~~i~~~PGh~~k~~~~l~-~~i~~aDlIl~VvDar~~~~~~~--~~i~~~ 144 (323)
.|..|.++-+|.-. ..++|.++|.+.|.|.|.++ ..+.+. +++++..+|+.++.-|..--... -+++++
T Consensus 50 ~~~iG~GK~eEi~~~v~~~~ad~VIf~~~LsP~Q~~N-----Le~~l~~kVIDRt~LILdIFa~RA~S~EgkLQVeLAqL 124 (411)
T COG2262 50 KTYIGSGKLEEIAEAVEETGADLVIFDHELSPSQLRN-----LEKELGVKVIDRTQLILDIFAQRARSREGKLQVELAQL 124 (411)
T ss_pred ceecCcchHHHHHHHHHhcCCCEEEECCcCCHHHHHH-----HHHHHCCEEEehHhHHHHHHHHHhccchhhhhhhHHhh
Confidence 34455555555443 56889999999998876322 344443 44677777777776554322222 222222
Q ss_pred hCCCCeEEEEeccCCccHHhHHHHHHHHHhhCceEEEecCcCCCcch--------------hhhHHHHHhhhhhhhhhcc
Q 020668 145 LGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTM--------------KLSRLAKALASDVNVKRRS 210 (323)
Q Consensus 145 l~~k~~iiVlNK~DLl~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~--------------~L~~~l~~l~~~~~~~~~~ 210 (323)
-...|.+. .+...+++.|..+ ...|-|-. +|++.++.+.......++.
T Consensus 125 ~Y~lpRl~--------------~~~~~l~~~Gggi----G~rGpGE~~lE~drR~ir~rI~~i~~eLe~v~~~R~~~R~~ 186 (411)
T COG2262 125 RYELPRLV--------------GSGSHLSRLGGGI----GFRGPGETQLETDRRRIRRRIAKLKRELENVEKAREPRRKK 186 (411)
T ss_pred hhhhhHhH--------------hhhhhcccccCCC----CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 11111111 1112222222111 12233322 2233333332222222222
Q ss_pred CCCCccceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEE--EEEe--CCcEEEEecCCccCC
Q 020668 211 KGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF--GKDLEFLDSPGIIPM 275 (323)
Q Consensus 211 ~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~--~~~~~liDTPGi~~~ 275 (323)
+. ...-..|++|||||+|||||+|+|.+... .+.+..++|.+.. .+.+ +..+.|.||.||+..
T Consensus 187 R~-~~~~p~vaLvGYTNAGKSTL~N~LT~~~~-~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~ 253 (411)
T COG2262 187 RS-RSGIPLVALVGYTNAGKSTLFNALTGADV-YVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRD 253 (411)
T ss_pred hc-ccCCCeEEEEeeccccHHHHHHHHhccCe-eccccccccccCceeEEEeCCCceEEEecCccCccc
Confidence 22 22345699999999999999999997654 7788888887743 3334 467999999999853
No 38
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.35 E-value=1.2e-12 Score=105.80 Aligned_cols=58 Identities=38% Similarity=0.653 Sum_probs=49.0
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEE--EEe-CCcEEEEecCCccCCC
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIPMR 276 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~~~~liDTPGi~~~~ 276 (323)
+|+|+|.||+|||||+|+|++.+...++..+++|+.... +.. +..+.++||||+....
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~ 61 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGE 61 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSS
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccc
Confidence 489999999999999999999878889999999999743 233 4567899999998653
No 39
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.34 E-value=1.6e-12 Score=114.48 Aligned_cols=61 Identities=30% Similarity=0.536 Sum_probs=54.4
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCc-cccccCCCCceeeEEEEEeCCcEEEEecCCccCCCC
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRI 277 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~-~~~v~~~pgtT~~~~~~~~~~~~~liDTPGi~~~~~ 277 (323)
...|+|+|++|||||||||+|++++ .+.+|.+||.|+.+.++.++..+.++|-||+--.+.
T Consensus 24 ~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv 85 (200)
T COG0218 24 LPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKV 85 (200)
T ss_pred CcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccccC
Confidence 3469999999999999999999965 579999999999999999998899999999975443
No 40
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.33 E-value=1.2e-11 Score=108.70 Aligned_cols=128 Identities=23% Similarity=0.163 Sum_probs=96.3
Q ss_pred cchhhHhhhcccccCcceeeee--ccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--
Q 020668 73 SIEAYEEECDWADLDADLYYWT--KSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG-- 146 (323)
Q Consensus 73 ~~~~~~e~e~~~~~~~~~~~~~--~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~-- 146 (323)
.+....|++...+++..+..+. ...+. +.++||| .++.+++...+..+|++|+|+|+..+......+....+.
T Consensus 43 ~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~-~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~ 121 (188)
T PF00009_consen 43 LDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH-EDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILREL 121 (188)
T ss_dssp HHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS-HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHT
T ss_pred ccccchhhhcccccccccccccccccccceeecccccc-cceeecccceecccccceeeeeccccccccccccccccccc
Confidence 5667778888899998888887 55444 7789999 568889999999999999999999887665555555443
Q ss_pred CCCeEEEEeccCCccHHh---HHHHHHHH-HhhC------ceEEEecCcCCCcchhhhHHHHHhh
Q 020668 147 NRKRILVLNREDMISMAD---RNAWATYF-AKQG------TKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 147 ~k~~iiVlNK~DLl~~~~---~~~~~~~~-~~~g------~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
+.|+++|+||+|+....- .+++.+.+ +..+ .+++++||.+|.|+.+|++.+.++.
T Consensus 122 ~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 122 GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred ccceEEeeeeccchhhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 788999999999994321 22222222 2222 4699999999999999998877654
No 41
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.23 E-value=2.8e-12 Score=118.75 Aligned_cols=93 Identities=20% Similarity=0.423 Sum_probs=65.6
Q ss_pred ccceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe---CCcEEEEecCCccCCCCCCHHHHHHHHhccc
Q 020668 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMRISDQAAAIKLAICDD 291 (323)
Q Consensus 215 ~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~liDTPGi~~~~~~d~~~~~~La~~~~ 291 (323)
...++|+++|.||||||||.|.+++.+.+.++..++|||....--+ ..++.++||||++..+.- .-+-.++++...
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~-r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMH-RRHHLMMSVLQN 148 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchh-hhHHHHHHhhhC
Confidence 4568999999999999999999999999999999999998543222 457889999999965432 222333343333
Q ss_pred ccccCcChHHHHHHHHHH
Q 020668 292 IGERSYDVADVAAILVQM 309 (323)
Q Consensus 292 i~~~~~~~~~v~~~ll~~ 309 (323)
. +++++.+|++++++|.
T Consensus 149 ~-~~a~q~AD~vvVv~Da 165 (379)
T KOG1423|consen 149 P-RDAAQNADCVVVVVDA 165 (379)
T ss_pred H-HHHHhhCCEEEEEEec
Confidence 2 2455555555555444
No 42
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=2.9e-11 Score=116.25 Aligned_cols=128 Identities=20% Similarity=0.160 Sum_probs=103.9
Q ss_pred CCCCCCCCcchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCC---------
Q 020668 65 GNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIP--------- 133 (323)
Q Consensus 65 ~~~~~~~~~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~--------- 133 (323)
+.+-++=..|-.++|||.+.+++..+..|.+++.. |-++||| +.+.++|-..+.+||+.|+|+|++.+
T Consensus 52 ~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~~~tIiDaPGH-rdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~ 130 (428)
T COG5256 52 ESFKFAWVLDKTKEERERGVTIDVAHSKFETDKYNFTIIDAPGH-RDFVKNMITGASQADVAVLVVDARDGEFEAGFGVG 130 (428)
T ss_pred CceEEEEEecCChhHHhcceEEEEEEEEeecCCceEEEeeCCch-HHHHHHhhcchhhccEEEEEEECCCCccccccccC
Confidence 44567777899999999999999999999999885 8899997 88999999999999999999999877
Q ss_pred -CCCCcHHHHHHhCCCCeEEEEeccCCccHHh--HHH----HHHHHHhhC-----ceEEEecCcCCCcchhh
Q 020668 134 -LSTTHPLMDQWLGNRKRILVLNREDMISMAD--RNA----WATYFAKQG-----TKVIFSNGQLGMGTMKL 193 (323)
Q Consensus 134 -~~~~~~~i~~~l~~k~~iiVlNK~DLl~~~~--~~~----~~~~~~~~g-----~~vi~iSa~~g~gi~~L 193 (323)
.+..+..+...++.+.+|+++||||+++.++ .++ .....+..| ..++++|+..|+|+.+.
T Consensus 131 gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 131 GQTREHAFLARTLGIKQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred CchhHHHHHHHhcCCceEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 2556677888888899999999999997543 112 222223345 35899999999998653
No 43
>PRK11058 GTPase HflX; Provisional
Probab=99.20 E-value=1.3e-11 Score=121.94 Aligned_cols=56 Identities=30% Similarity=0.408 Sum_probs=45.7
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEE--EEeC--CcEEEEecCCccC
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG--KDLEFLDSPGIIP 274 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~--~~~~liDTPGi~~ 274 (323)
.+|++||+||||||||+|+|.+.+.. +++.||+|++... +.+. ..+.++||||+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r 257 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIR 257 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCcccc
Confidence 47999999999999999999987754 7889999998643 3332 3678999999954
No 44
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.18 E-value=4.2e-11 Score=105.95 Aligned_cols=58 Identities=26% Similarity=0.391 Sum_probs=47.2
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccC-CCCceeeEEEEE---eCCcEEEEecCCccCCC
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAP-RPGVTRVLKWVR---FGKDLEFLDSPGIIPMR 276 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~-~pgtT~~~~~~~---~~~~~~liDTPGi~~~~ 276 (323)
+|+++|.||||||||+|+|++++.+.++. .+++|++.+... .+..+.++||||+....
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~ 63 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTS 63 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCcc
Confidence 68999999999999999999988766554 568888865432 36679999999998654
No 45
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.16 E-value=3.4e-11 Score=112.05 Aligned_cols=57 Identities=32% Similarity=0.537 Sum_probs=47.5
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEE-EEEe--CCcEEEEecCCccCC
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK-WVRF--GKDLEFLDSPGIIPM 275 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~-~~~~--~~~~~liDTPGi~~~ 275 (323)
+|+++|.||||||||+|+|++.+...+++.|+||++.. .+.. +.++.++||||+...
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~ 61 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEK 61 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCC
Confidence 48999999999999999999998888999999999842 2222 346889999999754
No 46
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.15 E-value=1.2e-10 Score=112.55 Aligned_cols=180 Identities=22% Similarity=0.275 Sum_probs=101.5
Q ss_pred CCCcchhhHhhhccc---ccCcceeeeeccccccccccchHHHHHHHHH-HHHhhcCeEEEEEeCCCCCCCCcHHH--HH
Q 020668 70 SNGSIEAYEEECDWA---DLDADLYYWTKSLRPVQWYPGHIAKTEKELK-DQLKLMDVVIEVRDARIPLSTTHPLM--DQ 143 (323)
Q Consensus 70 ~~~~~~~~~e~e~~~---~~~~~~~~~~~~l~~i~~~PGh~~k~~~~l~-~~i~~aDlIl~VvDar~~~~~~~~~i--~~ 143 (323)
..|.-|.++-+|.-. ..+++.+.|...+.+.| .....+.+. +++++..+|+.++..|..-.....++ ++
T Consensus 46 ~~~~~g~gk~~e~~~~~~~~~~~~vi~~~~l~p~q-----~~nl~~~~~~~v~Dr~~lil~iF~~ra~t~e~klqv~la~ 120 (351)
T TIGR03156 46 PATYIGKGKVEEIAELVEELEADLVIFDHELSPSQ-----ERNLEKALGCRVIDRTGLILDIFAQRARTHEGKLQVELAQ 120 (351)
T ss_pred CCeEecccHHHHHHHHHHhcCCCEEEECCCCCHHH-----HHHHHHHhCCcccchHHHHHHHHHHhccChHHHHHHHHHh
Confidence 344555566555554 57899999999998866 222333333 56788889999987775432222222 22
Q ss_pred HhCCCCeEEEEeccCCccHHhHHHHHHHHHhhCceEEEecCcCCCc--------------chhhhHHHHHhhhhhhhhhc
Q 020668 144 WLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMG--------------TMKLSRLAKALASDVNVKRR 209 (323)
Q Consensus 144 ~l~~k~~iiVlNK~DLl~~~~~~~~~~~~~~~g~~vi~iSa~~g~g--------------i~~L~~~l~~l~~~~~~~~~ 209 (323)
+-+..|.++ ..|.. +.+++..+ .. .|.| +.+|++.++++.......+.
T Consensus 121 l~~~l~r~~-------------~~~~~-l~~~~~~i---~~-~g~gE~~~~~~~~~i~~ri~~l~~~L~~~~~~~~~~r~ 182 (351)
T TIGR03156 121 LKYLLPRLV-------------GGWTH-LSRQGGGI---GT-RGPGETQLETDRRLIRERIAQLKKELEKVEKQRERQRR 182 (351)
T ss_pred ccchhhhhh-------------hhHHH-HHhhcCCC---CC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 212222221 12222 22221100 00 1111 22233333333222221111
Q ss_pred cCCCCccceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEE--EEe--CCcEEEEecCCccC
Q 020668 210 SKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF--GKDLEFLDSPGIIP 274 (323)
Q Consensus 210 ~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~--~~~~~liDTPGi~~ 274 (323)
.+ .....++|+++|+||||||||+|+|.+.. ..+.+.||+|++... +.+ +..+.|+||||+..
T Consensus 183 ~r-~~~~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~ 249 (351)
T TIGR03156 183 RR-KRADVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIR 249 (351)
T ss_pred hh-cccCCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCCCceEEEEecCcccc
Confidence 11 11234789999999999999999999876 567889999998543 334 35789999999953
No 47
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.14 E-value=3.5e-10 Score=113.33 Aligned_cols=128 Identities=15% Similarity=0.180 Sum_probs=97.7
Q ss_pred CCCCCCCcchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC---CcHH
Q 020668 66 NSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST---THPL 140 (323)
Q Consensus 66 ~~~~~~~~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~---~~~~ 140 (323)
..+++.+.|....|++.+++++..+..|..+-.. +-++||| .++.+++...+..+|++++|+|+..+... .+..
T Consensus 75 ~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~~~~i~~iDTPGh-~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~ 153 (474)
T PRK05124 75 KLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGH-EQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF 153 (474)
T ss_pred ccchhhhccCChHHhhcCCCeEeeEEEeccCCcEEEEEECCCc-HHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH
Confidence 3567889999999999999999999999876554 7789998 67888888889999999999999887644 3444
Q ss_pred HHHHhCCCCeEEEEeccCCccHHh--HHHHHHH----HHhhC----ceEEEecCcCCCcchhhh
Q 020668 141 MDQWLGNRKRILVLNREDMISMAD--RNAWATY----FAKQG----TKVIFSNGQLGMGTMKLS 194 (323)
Q Consensus 141 i~~~l~~k~~iiVlNK~DLl~~~~--~~~~~~~----~~~~g----~~vi~iSa~~g~gi~~L~ 194 (323)
+...++.+++++++||+|+++.++ ..+..+. +...+ ..++++|+++|+|+.++.
T Consensus 154 l~~~lg~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 154 IATLLGIKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred HHHHhCCCceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 555566678899999999985322 2222222 22222 578999999999997653
No 48
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.14 E-value=4.8e-10 Score=110.30 Aligned_cols=126 Identities=17% Similarity=0.224 Sum_probs=95.9
Q ss_pred CCCCCCCcchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH---H
Q 020668 66 NSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP---L 140 (323)
Q Consensus 66 ~~~~~~~~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~---~ 140 (323)
.+.++-+.|....|++.+.+++..+..|..+-+. +.+.||| .++.+++...+..+|++|+|+|+..+...... .
T Consensus 48 ~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~~~liDtPGh-~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~ 126 (406)
T TIGR02034 48 EIDLALLVDGLQAEREQGITIDVAYRYFSTDKRKFIVADTPGH-EQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY 126 (406)
T ss_pred ceeeeeeccCChHHhcCCcCeEeeeEEEccCCeEEEEEeCCCH-HHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH
Confidence 3567778999999999999999999999776554 7789999 67888888899999999999999988755443 3
Q ss_pred HHHHhCCCCeEEEEeccCCccHHh--HH----HHHHHHHhhC---ceEEEecCcCCCcchh
Q 020668 141 MDQWLGNRKRILVLNREDMISMAD--RN----AWATYFAKQG---TKVIFSNGQLGMGTMK 192 (323)
Q Consensus 141 i~~~l~~k~~iiVlNK~DLl~~~~--~~----~~~~~~~~~g---~~vi~iSa~~g~gi~~ 192 (323)
+...++.+++++++||+|+.+.++ .. ++.+++++.+ ..++++||++|.|+.+
T Consensus 127 ~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 127 IASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHcCCCcEEEEEEecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 444455667899999999985322 11 2222223333 3589999999999876
No 49
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.14 E-value=7.3e-11 Score=108.72 Aligned_cols=62 Identities=27% Similarity=0.377 Sum_probs=52.2
Q ss_pred CccceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe---CCcEEEEecCCccCC
Q 020668 214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM 275 (323)
Q Consensus 214 ~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~liDTPGi~~~ 275 (323)
...+++|+++|.+|||||||+|+|++.....++..+++|+..+.+.. +..+.++||||+...
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~ 92 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLES 92 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcc
Confidence 34578999999999999999999999988888888888888665443 557899999999865
No 50
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.14 E-value=2.1e-10 Score=114.09 Aligned_cols=126 Identities=18% Similarity=0.138 Sum_probs=94.5
Q ss_pred CCCCCCCcchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCC--------
Q 020668 66 NSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS-------- 135 (323)
Q Consensus 66 ~~~~~~~~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~-------- 135 (323)
.++++-+.|....|++.+.+++..+..|.+..+. +.+.||| .++.+++...+..+|.+|+|+|+..+.-
T Consensus 53 ~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh-~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~ 131 (447)
T PLN00043 53 SFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGH-RDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDG 131 (447)
T ss_pred chhhhhhhcCCHhHHhcCceEEEEEEEecCCCEEEEEEECCCH-HHHHHHHHhhhhhccEEEEEEEcccCceecccCCCc
Confidence 4566778999999999999999999999988665 7789999 7899999999999999999999987521
Q ss_pred --CCcHHHHHHhCCCCeEEEEeccCCccH----Hh----HHHHHHHHHhhC-----ceEEEecCcCCCcchh
Q 020668 136 --TTHPLMDQWLGNRKRILVLNREDMISM----AD----RNAWATYFAKQG-----TKVIFSNGQLGMGTMK 192 (323)
Q Consensus 136 --~~~~~i~~~l~~k~~iiVlNK~DLl~~----~~----~~~~~~~~~~~g-----~~vi~iSa~~g~gi~~ 192 (323)
.++..+...++.+++|+++||+|+.+. .. .++..+++.+.| ..++++||.+|+|+.+
T Consensus 132 qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 132 QTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hHHHHHHHHHHcCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 112222223334467889999998732 11 233344455555 4589999999999853
No 51
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.12 E-value=7.2e-10 Score=98.50 Aligned_cols=119 Identities=18% Similarity=0.083 Sum_probs=88.7
Q ss_pred CcchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--C
Q 020668 72 GSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N 147 (323)
Q Consensus 72 ~~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~ 147 (323)
+.|-...|++.+.+++..+..|...-+. +-++||| .++.+.+...+..+|++++|+|+..+.......+..++. +
T Consensus 39 ~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~-~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~ 117 (195)
T cd01884 39 EIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGH-ADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVG 117 (195)
T ss_pred cccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCH-HHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcC
Confidence 4567778999999999998888765443 6789999 568888899999999999999999877665555555543 5
Q ss_pred CC-eEEEEeccCCccHHhHH-----HHHHHHHhhC-----ceEEEecCcCCCcch
Q 020668 148 RK-RILVLNREDMISMADRN-----AWATYFAKQG-----TKVIFSNGQLGMGTM 191 (323)
Q Consensus 148 k~-~iiVlNK~DLl~~~~~~-----~~~~~~~~~g-----~~vi~iSa~~g~gi~ 191 (323)
+| +|+++||+|+++..+.. +..+++.+.| ..++++||++|.++.
T Consensus 118 ~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 118 VPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGD 172 (195)
T ss_pred CCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCCC
Confidence 55 77899999997543322 2223344444 469999999999863
No 52
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.12 E-value=4.5e-10 Score=100.42 Aligned_cols=133 Identities=17% Similarity=0.182 Sum_probs=95.5
Q ss_pred CCCCCCCCCCCCCcchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC
Q 020668 60 SSWHGGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT 137 (323)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~ 137 (323)
+...++.++.+.+.|....|++.+.+++..+..|...-++ +-++||| .++...+...+..+|++|+|+|+..+....
T Consensus 39 ~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~liDTpG~-~~~~~~~~~~~~~ad~~llVvD~~~~~~~~ 117 (208)
T cd04166 39 CGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFIIADTPGH-EQYTRNMVTGASTADLAILLVDARKGVLEQ 117 (208)
T ss_pred HhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEEEEECCcH-HHHHHHHHHhhhhCCEEEEEEECCCCccHh
Confidence 3445566677788999999999999999998888766554 6789999 556677778899999999999998876544
Q ss_pred cHHHHHHh---CCCCeEEEEeccCCccHHh--H----HHHHHHHHhhC---ceEEEecCcCCCcchhh
Q 020668 138 HPLMDQWL---GNRKRILVLNREDMISMAD--R----NAWATYFAKQG---TKVIFSNGQLGMGTMKL 193 (323)
Q Consensus 138 ~~~i~~~l---~~k~~iiVlNK~DLl~~~~--~----~~~~~~~~~~g---~~vi~iSa~~g~gi~~L 193 (323)
......++ +.+++++|+||+|+....+ . .+..+.+.+.+ ..++++||++|.|+.+.
T Consensus 118 ~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 118 TRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 43333332 2345778999999975321 1 12222333444 34899999999998753
No 53
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.08 E-value=4.9e-10 Score=111.43 Aligned_cols=128 Identities=20% Similarity=0.176 Sum_probs=94.9
Q ss_pred CCCCCCCCCcchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCC------
Q 020668 64 GGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS------ 135 (323)
Q Consensus 64 ~~~~~~~~~~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~------ 135 (323)
.+..+++-+.|....|++.+.+++..+..|...-+. +.+.||| .++.+++...+..+|++++|+|+..+..
T Consensus 51 ~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~~i~lIDtPGh-~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~ 129 (446)
T PTZ00141 51 KGSFKYAWVLDKLKAERERGITIDIALWKFETPKYYFTIIDAPGH-RDFIKNMITGTSQADVAILVVASTAGEFEAGISK 129 (446)
T ss_pred CcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCeEEEEEECCCh-HHHHHHHHHhhhhcCEEEEEEEcCCCceecccCC
Confidence 455667778999999999999999999998877555 7899999 6789999999999999999999987642
Q ss_pred ----CCcHHHHHHhCCCCeEEEEeccCC--ccH--HhH----HHHHHHHHhhC-----ceEEEecCcCCCcchh
Q 020668 136 ----TTHPLMDQWLGNRKRILVLNREDM--ISM--ADR----NAWATYFAKQG-----TKVIFSNGQLGMGTMK 192 (323)
Q Consensus 136 ----~~~~~i~~~l~~k~~iiVlNK~DL--l~~--~~~----~~~~~~~~~~g-----~~vi~iSa~~g~gi~~ 192 (323)
.++..+...++.+++|+++||+|+ ++. ... ++..+.+...| ..++++|+.+|+|+.+
T Consensus 130 ~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 130 DGQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred CccHHHHHHHHHHcCCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 223333333444567899999994 332 222 22333344433 4689999999999864
No 54
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.08 E-value=7e-10 Score=100.66 Aligned_cols=101 Identities=14% Similarity=-0.011 Sum_probs=77.6
Q ss_pred ccccccchHHHHHHHHHHHHh--hcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCeEEEEeccCCccHHhHHHHHHHHHh
Q 020668 99 PVQWYPGHIAKTEKELKDQLK--LMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAK 174 (323)
Q Consensus 99 ~i~~~PGh~~k~~~~l~~~i~--~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~iiVlNK~DLl~~~~~~~~~~~~~~ 174 (323)
.+.++||| .++.+.+...+. .+|++++|+|++.+....+..+..++. ++|+++|+||+|+++..+..+..+.+.+
T Consensus 87 ~liDtpG~-~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~~~~~l~~ 165 (224)
T cd04165 87 TFIDLAGH-ERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQETLKDLKR 165 (224)
T ss_pred EEEECCCc-HHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHHHHHHHHHHH
Confidence 37799999 677777777765 799999999999888777766666654 7899999999999877654443333221
Q ss_pred h------------------------------CceEEEecCcCCCcchhhhHHHHHh
Q 020668 175 Q------------------------------GTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 175 ~------------------------------g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
. ..+++.+|+.+|+|+++|.++|..+
T Consensus 166 ~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~l 221 (224)
T cd04165 166 ILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNLL 221 (224)
T ss_pred HhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHhc
Confidence 1 1368889999999999999888765
No 55
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.07 E-value=1.3e-10 Score=113.59 Aligned_cols=56 Identities=32% Similarity=0.483 Sum_probs=46.9
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEE--EEeC--CcEEEEecCCccCC
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG--KDLEFLDSPGIIPM 275 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~--~~~~liDTPGi~~~ 275 (323)
.|+|||+||||||||||+|.+.+. .+++.|+||+.... +..+ ..+.++||||+...
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~ 220 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEG 220 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCcccc
Confidence 599999999999999999998764 89999999998644 3333 35999999999854
No 56
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.06 E-value=3e-10 Score=113.14 Aligned_cols=59 Identities=36% Similarity=0.514 Sum_probs=49.6
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEE--EEe-CCcEEEEecCCccC
Q 020668 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIP 274 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~~~~liDTPGi~~ 274 (323)
..++|+++|+||||||||+|+|++.....+++.||||++... +.+ +..+.++||||+..
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~ 275 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRE 275 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCC
Confidence 457899999999999999999999877778999999998643 333 45689999999964
No 57
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.04 E-value=4.9e-10 Score=105.66 Aligned_cols=60 Identities=25% Similarity=0.364 Sum_probs=47.8
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEE---EEeCCcEEEEecCCccCC
Q 020668 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW---VRFGKDLEFLDSPGIIPM 275 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~---~~~~~~~~liDTPGi~~~ 275 (323)
..++|+++|.+||||||++|+|+++..+.++...++|..... ...+..+.++||||+...
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~ 99 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEG 99 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCch
Confidence 367899999999999999999999988778887766554322 223668999999999854
No 58
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.04 E-value=1.7e-09 Score=112.02 Aligned_cols=127 Identities=20% Similarity=0.209 Sum_probs=96.1
Q ss_pred CCCCCCCCcchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH--
Q 020668 65 GNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-- 140 (323)
Q Consensus 65 ~~~~~~~~~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~-- 140 (323)
+.++++-+.|....|++.+.+++..+..|...-.. +.+.||| .++.+++...+..+|++++|+|+..+......+
T Consensus 71 ~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~~~~~liDtPG~-~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~ 149 (632)
T PRK05506 71 DEIDLALLVDGLAAEREQGITIDVAYRYFATPKRKFIVADTPGH-EQYTRNMVTGASTADLAIILVDARKGVLTQTRRHS 149 (632)
T ss_pred CcceeeeeccCCHHHHhCCcCceeeeeEEccCCceEEEEECCCh-HHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHH
Confidence 34677788999999999999999999999877555 7788999 567888888999999999999998877554333
Q ss_pred -HHHHhCCCCeEEEEeccCCccH--HhHHHHHH----HHHhhC---ceEEEecCcCCCcchh
Q 020668 141 -MDQWLGNRKRILVLNREDMISM--ADRNAWAT----YFAKQG---TKVIFSNGQLGMGTMK 192 (323)
Q Consensus 141 -i~~~l~~k~~iiVlNK~DLl~~--~~~~~~~~----~~~~~g---~~vi~iSa~~g~gi~~ 192 (323)
+...++.+++++++||+|+++. +...+..+ ++.+.+ ..++++||++|.|+.+
T Consensus 150 ~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 150 FIASLLGIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHhCCCeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 3333445778999999999852 22222222 223444 3589999999999874
No 59
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.04 E-value=2.8e-09 Score=93.68 Aligned_cols=126 Identities=20% Similarity=0.208 Sum_probs=82.5
Q ss_pred chhhHhhhcccccCcceeeeecc--------------cc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC
Q 020668 74 IEAYEEECDWADLDADLYYWTKS--------------LR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT 137 (323)
Q Consensus 74 ~~~~~e~e~~~~~~~~~~~~~~~--------------l~--~i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~ 137 (323)
+....|++...+++.++..+... .. .+-++||| ..+.+.+...+..+|.+++|+|++.+....
T Consensus 30 ~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~-~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~ 108 (192)
T cd01889 30 DKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGH-ASLIRTIIGGAQIIDLMLLVVDATKGIQTQ 108 (192)
T ss_pred ccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCc-HHHHHHHHHHHhhCCEEEEEEECCCCccHH
Confidence 33344556666666665444322 11 25678999 456677777788999999999998765433
Q ss_pred cHHHHHH--hCCCCeEEEEeccCCccHHhH----HHHHHHHHh-------hCceEEEecCcCCCcchhhhHHHHHh
Q 020668 138 HPLMDQW--LGNRKRILVLNREDMISMADR----NAWATYFAK-------QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 138 ~~~i~~~--l~~k~~iiVlNK~DLl~~~~~----~~~~~~~~~-------~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
......+ ..++|+++|+||+|+....+. +++.+++.. .+.+++++||++|.|+++|++.+...
T Consensus 109 ~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~ 184 (192)
T cd01889 109 TAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNL 184 (192)
T ss_pred HHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhc
Confidence 3222111 236799999999999865432 222222211 23679999999999999988876543
No 60
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.03 E-value=5.2e-10 Score=97.92 Aligned_cols=59 Identities=32% Similarity=0.540 Sum_probs=51.1
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCc-cccccCCCCceeeEEEEEeCCcEEEEecCCccC
Q 020668 216 RAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIP 274 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~-~~~v~~~pgtT~~~~~~~~~~~~~liDTPGi~~ 274 (323)
..++|+++|.+|||||||+|+|++.. ...+++.+|+|+++..+..+.++.|+||||+..
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~ 82 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGY 82 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCC
Confidence 35679999999999999999999864 567888899999988777777899999999854
No 61
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.03 E-value=4.1e-10 Score=97.95 Aligned_cols=58 Identities=31% Similarity=0.537 Sum_probs=50.1
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCc-cccccCCCCceeeEEEEEeCCcEEEEecCCccC
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIP 274 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~-~~~v~~~pgtT~~~~~~~~~~~~~liDTPGi~~ 274 (323)
..+|+++|.+|+|||||+|+|.+.. ...+++.+|+|++...+..+.++.++||||+..
T Consensus 18 ~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~ 76 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGYGY 76 (179)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCCcEEEEeCCCCcc
Confidence 4679999999999999999999875 556788999999988776667899999999854
No 62
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.03 E-value=1.2e-09 Score=108.00 Aligned_cols=126 Identities=15% Similarity=0.048 Sum_probs=92.4
Q ss_pred CCCCCCcchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCC--CCCCCcHHHH
Q 020668 67 SNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARI--PLSTTHPLMD 142 (323)
Q Consensus 67 ~~~~~~~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~--~~~~~~~~i~ 142 (323)
.+++.+.|....|++.+.+++..+..|...-.. +-++||| .++.+++...+..+|++|+|+|+.+ +.........
T Consensus 53 ~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~~i~liDtpG~-~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~ 131 (425)
T PRK12317 53 FKFAWVMDRLKEERERGVTIDLAHKKFETDKYYFTIVDCPGH-RDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHV 131 (425)
T ss_pred cchhhhhccCHhHhhcCccceeeeEEEecCCeEEEEEECCCc-ccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHH
Confidence 556777899999999999999999999876554 6788999 6677888888899999999999987 4433333332
Q ss_pred HH---hCCCCeEEEEeccCCccHHh--H----HHHHHHHHhhC-----ceEEEecCcCCCcchhh
Q 020668 143 QW---LGNRKRILVLNREDMISMAD--R----NAWATYFAKQG-----TKVIFSNGQLGMGTMKL 193 (323)
Q Consensus 143 ~~---l~~k~~iiVlNK~DLl~~~~--~----~~~~~~~~~~g-----~~vi~iSa~~g~gi~~L 193 (323)
.+ ++.+++++++||+|+.+..+ . ++..+.+...+ ..++++||++|.|++++
T Consensus 132 ~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 132 FLARTLGINQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred HHHHHcCCCeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence 22 33456899999999975221 1 22223343344 35899999999999863
No 63
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.03 E-value=1e-09 Score=108.52 Aligned_cols=128 Identities=16% Similarity=0.131 Sum_probs=94.5
Q ss_pred CCCCCCCCCcchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--
Q 020668 64 GGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-- 139 (323)
Q Consensus 64 ~~~~~~~~~~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~-- 139 (323)
.+.++++.+.|....|++.+.+++..+..|...... +-+.||| .++.+.+...+..+|++++|+|+..+......
T Consensus 51 ~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~~i~iiDtpGh-~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t 129 (426)
T TIGR00483 51 KASFEFAWVMDRLKEERERGVTIDVAHWKFETDKYEVTIVDCPGH-RDFIKNMITGASQADAAVLVVAVGDGEFEVQPQT 129 (426)
T ss_pred CcccchhhhhccCHHHhhcCceEEEEEEEEccCCeEEEEEECCCH-HHHHHHHHhhhhhCCEEEEEEECCCCCcccCCch
Confidence 345667788999999999999999999999876555 6788998 66888888888999999999999887322221
Q ss_pred ----HHHHHhCCCCeEEEEeccCCcc--HHh----HHHHHHHHHhhC-----ceEEEecCcCCCcchh
Q 020668 140 ----LMDQWLGNRKRILVLNREDMIS--MAD----RNAWATYFAKQG-----TKVIFSNGQLGMGTMK 192 (323)
Q Consensus 140 ----~i~~~l~~k~~iiVlNK~DLl~--~~~----~~~~~~~~~~~g-----~~vi~iSa~~g~gi~~ 192 (323)
.+...++.+++++|+||+|+.+ .+. .+++.++++..+ ..++++||++|.|+.+
T Consensus 130 ~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 130 REHAFLARTLGINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHHHcCCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 2233334567899999999974 222 123333444444 4689999999999875
No 64
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.03 E-value=3e-10 Score=109.53 Aligned_cols=57 Identities=40% Similarity=0.541 Sum_probs=47.2
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEE--EEEeC------------------CcEEEEecCCccCC
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG------------------KDLEFLDSPGIIPM 275 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~------------------~~~~liDTPGi~~~ 275 (323)
++|++||+||||||||+|+|.+.. ..+++.||||++.. .+.+. ..+.++||||+...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~ 79 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKG 79 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCC
Confidence 579999999999999999999887 68999999998854 23322 14899999999853
No 65
>PTZ00258 GTP-binding protein; Provisional
Probab=99.03 E-value=3.3e-10 Score=110.28 Aligned_cols=59 Identities=36% Similarity=0.484 Sum_probs=47.5
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEE--EEe------------------CCcEEEEecCCccCC
Q 020668 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF------------------GKDLEFLDSPGIIPM 275 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~------------------~~~~~liDTPGi~~~ 275 (323)
..++|++||+||||||||+|+|.+.+ ..++++||||++... +.. +..+.++||||+...
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCc-ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 35689999999999999999998766 589999999988533 221 224899999999853
No 66
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.03 E-value=2.6e-10 Score=106.33 Aligned_cols=55 Identities=42% Similarity=0.524 Sum_probs=45.1
Q ss_pred eeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEE--EEeCC------------------cEEEEecCCccCC
Q 020668 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFGK------------------DLEFLDSPGIIPM 275 (323)
Q Consensus 220 v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~~------------------~~~liDTPGi~~~ 275 (323)
|++||+||||||||+|+|.+.+. .++++||||++... +.+.. .+.++||||+...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~ 75 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKG 75 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCC
Confidence 58999999999999999999876 89999999988543 22221 3899999999853
No 67
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.02 E-value=5.1e-10 Score=111.14 Aligned_cols=60 Identities=38% Similarity=0.497 Sum_probs=50.4
Q ss_pred ccceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEE--Ee-CCcEEEEecCCccC
Q 020668 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGIIP 274 (323)
Q Consensus 215 ~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~--~~-~~~~~liDTPGi~~ 274 (323)
...++|+++|.||||||||+|+|++.....+++.||||++.... .+ +..+.++||||+..
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~ 263 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIRE 263 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCccc
Confidence 45689999999999999999999998777889999999996432 23 45688999999964
No 68
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.02 E-value=2.2e-09 Score=106.99 Aligned_cols=100 Identities=14% Similarity=0.107 Sum_probs=76.3
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCC-C---CCCcHHHHHHhCCCCeEEEEeccCCccHHhHHHHHHHH---
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIP-L---STTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYF--- 172 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~-~---~~~~~~i~~~l~~k~~iiVlNK~DLl~~~~~~~~~~~~--- 172 (323)
+.+.||| .++.+++...+..+|++++|+|+..+ . +.++..+...++.+++|+|+||+|+++.+...+..+.+
T Consensus 121 ~IDtPGH-~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~~~~~~~~ei~~~ 199 (460)
T PTZ00327 121 FVDCPGH-DILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEAQAQDQYEEIRNF 199 (460)
T ss_pred eeeCCCH-HHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHHHHHHHHHHHHHH
Confidence 7789999 78999999999999999999999875 2 22344445556677899999999998755433322222
Q ss_pred -Hh---hCceEEEecCcCCCcchhhhHHHHHh
Q 020668 173 -AK---QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 173 -~~---~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
.. ...+++++||++|.|++.|++.|.+.
T Consensus 200 l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~ 231 (460)
T PTZ00327 200 VKGTIADNAPIIPISAQLKYNIDVVLEYICTQ 231 (460)
T ss_pred HHhhccCCCeEEEeeCCCCCCHHHHHHHHHhh
Confidence 22 24689999999999999999988753
No 69
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.02 E-value=1.6e-09 Score=111.65 Aligned_cols=128 Identities=16% Similarity=0.122 Sum_probs=92.7
Q ss_pred chhhHhhhcccccCcceeeeecccc---ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CC
Q 020668 74 IEAYEEECDWADLDADLYYWTKSLR---PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NR 148 (323)
Q Consensus 74 ~~~~~e~e~~~~~~~~~~~~~~~l~---~i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k 148 (323)
|....|++.+++++..|.++...-. .+-+.||| .++.+++...+..+|++++|+|+..+......+...++. +.
T Consensus 26 dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh-e~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi 104 (614)
T PRK10512 26 DRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH-EKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGN 104 (614)
T ss_pred ccchhcccCCceEEeeeEEEecCCCcEEEEEECCCH-HHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCC
Confidence 3445566778888888877754322 37789999 778899999999999999999999876554444333332 34
Q ss_pred C-eEEEEeccCCccHHhHHH----HHHHHHhhC---ceEEEecCcCCCcchhhhHHHHHhhh
Q 020668 149 K-RILVLNREDMISMADRNA----WATYFAKQG---TKVIFSNGQLGMGTMKLSRLAKALAS 202 (323)
Q Consensus 149 ~-~iiVlNK~DLl~~~~~~~----~~~~~~~~g---~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (323)
+ +++|+||+|+++.+.... ..+++.+.+ .+++++|+++|.|+++|++.|.++..
T Consensus 105 ~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 105 PMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLPE 166 (614)
T ss_pred CeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhc
Confidence 4 689999999987644332 233333333 56899999999999999999887654
No 70
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.00 E-value=3.3e-09 Score=89.41 Aligned_cols=99 Identities=18% Similarity=0.188 Sum_probs=69.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHH---hCCCCeEEEEeccCCccHHh----HHHHHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW---LGNRKRILVLNREDMISMAD----RNAWATYF 172 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~---l~~k~~iiVlNK~DLl~~~~----~~~~~~~~ 172 (323)
+-++||+ .++.+.+...+..+|++++|+|++.+........... ...+|+++|+||+|+.+... ..++.+.+
T Consensus 55 ~~DtpG~-~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~ 133 (164)
T cd04171 55 FIDVPGH-EKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELL 133 (164)
T ss_pred EEECCCh-HHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHH
Confidence 5578998 5566777778899999999999987543322222222 23459999999999986532 23334444
Q ss_pred Hh---hCceEEEecCcCCCcchhhhHHHHH
Q 020668 173 AK---QGTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 173 ~~---~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
.. .+..++++|+++|.|++++.+.+..
T Consensus 134 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 134 AGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred HhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 44 2467999999999999998877653
No 71
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.00 E-value=7.6e-10 Score=97.58 Aligned_cols=107 Identities=19% Similarity=0.141 Sum_probs=84.2
Q ss_pred CCcchhhHhhhcccccCcceeeeeccccccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CC
Q 020668 71 NGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NR 148 (323)
Q Consensus 71 ~~~~~~~~e~e~~~~~~~~~~~~~~~l~~i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k 148 (323)
||+.+...++|.|..+.++|+..| .+...+++|+|+|+++...|.++.+++. +.
T Consensus 81 GyAkv~k~~~e~w~~~i~~YL~~R------------------------~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i 136 (200)
T COG0218 81 GYAKVPKEVKEKWKKLIEEYLEKR------------------------ANLKGVVLLIDARHPPKDLDREMIEFLLELGI 136 (200)
T ss_pred ccccCCHHHHHHHHHHHHHHHhhc------------------------hhheEEEEEEECCCCCcHHHHHHHHHHHHcCC
Confidence 467777777777777777777766 5678899999999999999999999986 78
Q ss_pred CeEEEEeccCCccHHhHHHHHHHHH-hhC----ce--EEEecCcCCCcchhhhHHHHHhh
Q 020668 149 KRILVLNREDMISMADRNAWATYFA-KQG----TK--VIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 149 ~~iiVlNK~DLl~~~~~~~~~~~~~-~~g----~~--vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
|+++|+||+|.++..+..+.+.... .++ .. ++++|+..+.|+++|++.|.+..
T Consensus 137 ~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~ 196 (200)
T COG0218 137 PVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWL 196 (200)
T ss_pred CeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHh
Confidence 9999999999999877655444443 222 22 78899999999999988876653
No 72
>COG1159 Era GTPase [General function prediction only]
Probab=99.00 E-value=3.3e-09 Score=98.54 Aligned_cols=108 Identities=18% Similarity=0.120 Sum_probs=84.9
Q ss_pred cccchHH-------HHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCC--CCeEEEEeccCCccHHh-HHHHHHH
Q 020668 102 WYPGHIA-------KTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGN--RKRILVLNREDMISMAD-RNAWATY 171 (323)
Q Consensus 102 ~~PGh~~-------k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~--k~~iiVlNK~DLl~~~~-~~~~~~~ 171 (323)
++||.+. ...+..+..+..+|+|++|+|+..+++..+..+.+.++. .|+++++||+|+++.+. +....++
T Consensus 60 DTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~ 139 (298)
T COG1159 60 DTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAF 139 (298)
T ss_pred eCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHH
Confidence 6676642 334555566899999999999999999999998888874 69999999999998776 4556666
Q ss_pred HHhhC--ceEEEecCcCCCcchhhhHHHHHhhhhhhhhhc
Q 020668 172 FAKQG--TKVIFSNGQLGMGTMKLSRLAKALASDVNVKRR 209 (323)
Q Consensus 172 ~~~~g--~~vi~iSa~~g~gi~~L~~~l~~l~~~~~~~~~ 209 (323)
+.... ..++++||++|.|++.|.+.+....++......
T Consensus 140 ~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~yp 179 (298)
T COG1159 140 LKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEGPWYYP 179 (298)
T ss_pred HHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCCCCcCC
Confidence 55433 579999999999999999999887765544333
No 73
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.99 E-value=3.3e-09 Score=108.84 Aligned_cols=127 Identities=18% Similarity=0.131 Sum_probs=89.7
Q ss_pred hHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCC-eE
Q 020668 77 YEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRK-RI 151 (323)
Q Consensus 77 ~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~-~i 151 (323)
..|.+.+.+++..+.++..+-.. +-+.||| .++.+++...+..+|++++|+|+..+......+...++ .+.+ ++
T Consensus 29 ~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGh-e~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iI 107 (581)
T TIGR00475 29 PEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGH-EKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTI 107 (581)
T ss_pred hhHhcCCceEEeEEEEEEeCCEEEEEEECCCH-HHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEE
Confidence 34666777887777666544333 6788999 77889999999999999999999986533222222222 2455 99
Q ss_pred EEEeccCCccHHhHHH----HHHHHHhh----CceEEEecCcCCCcchhhhHHHHHhhhhh
Q 020668 152 LVLNREDMISMADRNA----WATYFAKQ----GTKVIFSNGQLGMGTMKLSRLAKALASDV 204 (323)
Q Consensus 152 iVlNK~DLl~~~~~~~----~~~~~~~~----g~~vi~iSa~~g~gi~~L~~~l~~l~~~~ 204 (323)
+|+||+|+++.+.... ..+.+... +.+++++|+++|.|++++.+.+..+....
T Consensus 108 VVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 108 VVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLESL 168 (581)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhC
Confidence 9999999987653322 22223332 36799999999999999988887765543
No 74
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.99 E-value=2.2e-09 Score=96.76 Aligned_cols=124 Identities=19% Similarity=0.146 Sum_probs=87.5
Q ss_pred CCCCCCcchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC-------CCC
Q 020668 67 SNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-------STT 137 (323)
Q Consensus 67 ~~~~~~~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~-------~~~ 137 (323)
++++-+.|-...|++.+.+++.....|...-.+ +.++||| .++..++...+..+|++|+|+|+..+. ...
T Consensus 46 ~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~liDtpG~-~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~ 124 (219)
T cd01883 46 FKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFTILDAPGH-RDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQ 124 (219)
T ss_pred hhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEEEEECCCh-HHHHHHHHHHhhhCCEEEEEEECCCCccccccccccc
Confidence 445567889999999999999998888765444 6789999 556777778889999999999998742 111
Q ss_pred cHH---HHHHhCCCCeEEEEeccCCcc----HHhHHHHH----HHHHhhC-----ceEEEecCcCCCcch
Q 020668 138 HPL---MDQWLGNRKRILVLNREDMIS----MADRNAWA----TYFAKQG-----TKVIFSNGQLGMGTM 191 (323)
Q Consensus 138 ~~~---i~~~l~~k~~iiVlNK~DLl~----~~~~~~~~----~~~~~~g-----~~vi~iSa~~g~gi~ 191 (323)
... +...++.+|+++++||+|+.. .....+.. +.+...+ ..++++||++|.|+.
T Consensus 125 ~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 125 TREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred hHHHHHHHHHcCCCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 111 122223478899999999983 22222222 2344433 458999999999986
No 75
>PRK04213 GTP-binding protein; Provisional
Probab=98.96 E-value=8.9e-10 Score=97.25 Aligned_cols=54 Identities=37% Similarity=0.588 Sum_probs=46.6
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEeCCcEEEEecCCc
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGI 272 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~~~liDTPGi 272 (323)
..+|+++|.+|||||||+|+|.+.. ..++..||+|++...+..+ ++.++||||+
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~ 62 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKK-VRVGKRPGVTRKPNHYDWG-DFILTDLPGF 62 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCceeeCceEEeec-ceEEEeCCcc
Confidence 4689999999999999999999865 5688899999987666555 7999999996
No 76
>PRK15494 era GTPase Era; Provisional
Probab=98.96 E-value=1.5e-09 Score=104.38 Aligned_cols=58 Identities=31% Similarity=0.601 Sum_probs=48.5
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEE--EEe-CCcEEEEecCCccC
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIP 274 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~~~~liDTPGi~~ 274 (323)
..+|+++|.||||||||+|+|++.+...+++.++||++... +.. +.++.++||||+..
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~ 112 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFE 112 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCC
Confidence 46899999999999999999999887778899999988532 222 45789999999964
No 77
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=98.96 E-value=5.1e-10 Score=110.36 Aligned_cols=205 Identities=18% Similarity=0.243 Sum_probs=120.8
Q ss_pred HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCeEEEEeccCCccHHhHHHHHHHHHhhC-------------
Q 020668 110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQG------------- 176 (323)
Q Consensus 110 ~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~iiVlNK~DLl~~~~~~~~~~~~~~~g------------- 176 (323)
+.++..+..++--++..|+|..+.+...++.+...+..+..++.+||+|+++.+...-....+...-
T Consensus 100 y~k~~~~~~~~~~~~~~vvd~~d~p~~i~p~~~~~v~~~~~~v~~n~vdl~p~d~~~~~c~rc~~l~~~~~vk~~~~en~ 179 (572)
T KOG1249|consen 100 YKKEKSEKQENPALARKVVDLSDEPCSIDPLLTNDVGSPRLFVDGNKVDLLPKDSRPGYCQRCHSLLHYGMIKAGGGENL 179 (572)
T ss_pred hhhhhhhhhhcccceEEeeecccCccccccchhhcccCCceEeeccccccccccccchHHHHHHhhcccceeecccccCC
Confidence 5566666666767788889988888888888888888777899999999998876433333332210
Q ss_pred ------ceEEEecCcCCCcchhhhHHHHHhhhhhh-----------------------hh--------------------
Q 020668 177 ------TKVIFSNGQLGMGTMKLSRLAKALASDVN-----------------------VK-------------------- 207 (323)
Q Consensus 177 ------~~vi~iSa~~g~gi~~L~~~l~~l~~~~~-----------------------~~-------------------- 207 (323)
..+..++++++.|+++|.-.+.....-.- .+
T Consensus 180 ~p~~~f~~~~~~r~ktgyg~eeLI~~lvd~~df~Gdf~lvg~tnvgks~~fn~ll~sD~c~~~~p~lVd~aT~~dwpgTt 259 (572)
T KOG1249|consen 180 NPDFDFDHVDLIRAKTGYGIEELIVMLVDIVDFRGDFYLVGATNVGKSTLFNALLESDLCSVNAPKLVDRATISDWPGTT 259 (572)
T ss_pred CcccchhhhhhhhhhhcccHHHHHHHhhheeeccCceeeeeecccchhhHHHHHhhhccccccccceeeeeecccCCccc
Confidence 12345678888888776554432211000 00
Q ss_pred --------------h----------------c----------cCCCCccceEeeeecCCCCChhhHHHhhhcCc-----c
Q 020668 208 --------------R----------------R----------SKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR-----M 242 (323)
Q Consensus 208 --------------~----------------~----------~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~-----~ 242 (323)
+ + +.+.......|+.||.+|.||+++||++-.+- .
T Consensus 260 lsllkfpv~~p~~~r~~~r~krl~~~~~~akk~~g~r~l~~~~~~~ag~~~~v~~vg~t~a~~e~~~~~~~~~~~a~~~~ 339 (572)
T KOG1249|consen 260 LSLLKFPVLVPHPYRLGGRRKRLGVHSVSAKKDMGERDLLALETGDAGKAGPVAAVGRTFAGSEELINAMAKELHADVEA 339 (572)
T ss_pred cchhhCccccccchhhccchhhhhhhhhhhHhhhhHHHHHHhhhhccccccchHHhhhhhhccchhhhhhhhhhccchhc
Confidence 0 0 00000111224444455555555555444221 1
Q ss_pred ccccCCCCceeeEEEEE--eCCcEEEEecCCccCCC-C---CCHHHHHHHHhcccccccCcChHHHHHHHHHHHhcCC
Q 020668 243 CPAAPRPGVTRVLKWVR--FGKDLEFLDSPGIIPMR-I---SDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIP 314 (323)
Q Consensus 243 ~~v~~~pgtT~~~~~~~--~~~~~~liDTPGi~~~~-~---~d~~~~~~La~~~~i~~~~~~~~~v~~~ll~~L~~~~ 314 (323)
..-++.||||.....+. +..+-+++||||+.-+. + -..++...++....+.++++....=..+++..|.|+|
T Consensus 340 ~~e~~vPgtTLg~~ri~~i~~~~~w~YDTPG~~~~~q~~~llt~eEl~~v~p~~~lrprtf~vkpG~sl~iGGl~RLD 417 (572)
T KOG1249|consen 340 LAEEPVPGTTLGIRRIEGIFKRGAWLYDTPGVLNPNQILSLLTSEELLNVTPRRVLRPRTFRVKPGYSLFIGGLVRLD 417 (572)
T ss_pred cccCCCCcccccceeeeccccccceeecCCCccChhhhhhhccHHHhhhcCcccccccceEEcCCCcEEEEeeeEEee
Confidence 12356788988865544 45566799999998432 2 1345566677777888888777644455555555554
No 78
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.96 E-value=1.4e-09 Score=101.78 Aligned_cols=83 Identities=28% Similarity=0.425 Sum_probs=60.1
Q ss_pred hhhHHHHHhhhhhhhh--hccCC---C---CccceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE---EEEEe
Q 020668 192 KLSRLAKALASDVNVK--RRSKG---L---LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL---KWVRF 260 (323)
Q Consensus 192 ~L~~~l~~l~~~~~~~--~~~~~---~---~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~---~~~~~ 260 (323)
.|+..+.++..+.... +...+ + .....+|++||+||||||||+|+|.+.+ ..++++|+||... .+.+.
T Consensus 30 ~lKaklA~Lr~El~~~~~~~gggg~gf~V~KsGda~v~lVGfPsvGKStLL~~LTnt~-seva~y~FTTl~~VPG~l~Y~ 108 (365)
T COG1163 30 LLKAKLAELREELEKRKSKSGGGGSGFAVKKSGDATVALVGFPSVGKSTLLNKLTNTK-SEVADYPFTTLEPVPGMLEYK 108 (365)
T ss_pred HHHHHHHHHHHHHhhhhhcCCCCCCcceEeccCCeEEEEEcCCCccHHHHHHHHhCCC-ccccccCceecccccceEeec
Confidence 4555666666554432 11111 0 1235689999999999999999999865 4899999999984 34555
Q ss_pred CCcEEEEecCCccCC
Q 020668 261 GKDLEFLDSPGIIPM 275 (323)
Q Consensus 261 ~~~~~liDTPGi~~~ 275 (323)
+-.++++|+|||+..
T Consensus 109 ga~IQild~Pgii~g 123 (365)
T COG1163 109 GAQIQLLDLPGIIEG 123 (365)
T ss_pred CceEEEEcCcccccC
Confidence 788999999999853
No 79
>PRK00089 era GTPase Era; Reviewed
Probab=98.96 E-value=9.5e-10 Score=103.18 Aligned_cols=57 Identities=37% Similarity=0.596 Sum_probs=47.6
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEE-EEe-C-CcEEEEecCCccCC
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW-VRF-G-KDLEFLDSPGIIPM 275 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~-~~~-~-~~~~liDTPGi~~~ 275 (323)
.|+++|.||||||||+|+|++.+.+.+++.|+||++... +.. + .++.++||||+..+
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~ 66 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKP 66 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCc
Confidence 489999999999999999999988889999999988432 222 2 47899999999754
No 80
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.95 E-value=6.7e-10 Score=109.56 Aligned_cols=55 Identities=44% Similarity=0.628 Sum_probs=47.3
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEE---eCCcEEEEecCCcc
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR---FGKDLEFLDSPGII 273 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~---~~~~~~liDTPGi~ 273 (323)
+|++||.||||||||+|+|+++....+++.||+|++..... .+..+.|+||||+.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~ 58 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIE 58 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCC
Confidence 38999999999999999999988778899999999865433 35679999999985
No 81
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.95 E-value=5.4e-09 Score=93.10 Aligned_cols=100 Identities=16% Similarity=0.149 Sum_probs=70.1
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC-CCC-cHHHHHH--hCCCCeEEEEeccCCccHHhHHHHHH----H
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-STT-HPLMDQW--LGNRKRILVLNREDMISMADRNAWAT----Y 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~-~~~-~~~i~~~--l~~k~~iiVlNK~DLl~~~~~~~~~~----~ 171 (323)
+-+.||| .++.+.+...+..+|++++|+|+..+. ... ...+..+ .+.+|+++|+||+|+.+..+.....+ .
T Consensus 87 ~iDtPG~-~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~ 165 (203)
T cd01888 87 FVDCPGH-EILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEEQALENYEQIKKF 165 (203)
T ss_pred EEECCCh-HHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHHHHHHHHHHHHHH
Confidence 4578998 668888888899999999999998752 222 2222222 22457899999999987544322222 2
Q ss_pred HHh---hCceEEEecCcCCCcchhhhHHHHHh
Q 020668 172 FAK---QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 172 ~~~---~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
+.. .+..++++||++|.|+++|++.+.+.
T Consensus 166 ~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~ 197 (203)
T cd01888 166 VKGTIAENAPIIPISAQLKYNIDVLLEYIVKK 197 (203)
T ss_pred HhccccCCCcEEEEeCCCCCCHHHHHHHHHHh
Confidence 222 14578999999999999998887654
No 82
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.94 E-value=8.2e-09 Score=88.40 Aligned_cols=103 Identities=19% Similarity=0.153 Sum_probs=75.6
Q ss_pred cccccch---HHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCeEEEEeccCCccHHhHHHHHHHHHhhC
Q 020668 100 VQWYPGH---IAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQG 176 (323)
Q Consensus 100 i~~~PGh---~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~iiVlNK~DLl~~~~~~~~~~~~~~~g 176 (323)
+-+.||. ..+..+.+...+..+|++++|+|+..+.+.....+.....++|+++++||+|+.+. +...+.+++.+.+
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~~ 119 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDIGVSKRQIAVISKTDMPDA-DVAATRKLLLETG 119 (158)
T ss_pred cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhccCCCCeEEEEEccccCcc-cHHHHHHHHHHcC
Confidence 4567774 23456666677899999999999987766555555554447899999999998653 2334445555555
Q ss_pred --ceEEEecCcCCCcchhhhHHHHHhhhh
Q 020668 177 --TKVIFSNGQLGMGTMKLSRLAKALASD 203 (323)
Q Consensus 177 --~~vi~iSa~~g~gi~~L~~~l~~l~~~ 203 (323)
.+++++|+++|+|+++|.+.+.++...
T Consensus 120 ~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 120 FEEPIFELNSHDPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred CCCCEEEEECCCccCHHHHHHHHHHhchh
Confidence 379999999999999999888776543
No 83
>PRK12736 elongation factor Tu; Reviewed
Probab=98.94 E-value=8e-09 Score=101.31 Aligned_cols=128 Identities=16% Similarity=0.065 Sum_probs=92.8
Q ss_pred CcchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--C
Q 020668 72 GSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N 147 (323)
Q Consensus 72 ~~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~ 147 (323)
+.|....|++.+.+++..+..|.+..+. +-+.||| .++.+++...+..+|++++|+|+..+......+...++. +
T Consensus 49 ~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh-~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g 127 (394)
T PRK12736 49 SIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGH-ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVG 127 (394)
T ss_pred hhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCH-HHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcC
Confidence 5688889999999999999988766444 7789999 578888888899999999999999876555544444433 5
Q ss_pred CC-eEEEEeccCCccHHhHH-----HHHHHHHhhC-----ceEEEecCcCCC--------cchhhhHHHHHh
Q 020668 148 RK-RILVLNREDMISMADRN-----AWATYFAKQG-----TKVIFSNGQLGM--------GTMKLSRLAKAL 200 (323)
Q Consensus 148 k~-~iiVlNK~DLl~~~~~~-----~~~~~~~~~g-----~~vi~iSa~~g~--------gi~~L~~~l~~l 200 (323)
+| +|+++||+|+++.++.. +..+++...+ .+++++||++|. ++..|++.+.+.
T Consensus 128 ~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~ 199 (394)
T PRK12736 128 VPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEY 199 (394)
T ss_pred CCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHh
Confidence 66 67899999998654322 2223333333 368999999983 455666655544
No 84
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.92 E-value=6.9e-09 Score=102.13 Aligned_cols=101 Identities=17% Similarity=0.176 Sum_probs=73.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC-CCC---cHHHHHHhCCCCeEEEEeccCCccHHhHHH----HHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-STT---HPLMDQWLGNRKRILVLNREDMISMADRNA----WATY 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~-~~~---~~~i~~~l~~k~~iiVlNK~DLl~~~~~~~----~~~~ 171 (323)
+-+.||| .++.+++...+..+|++++|+|++.+. ... +..+...++.+++++|+||+|+++.+...+ ..++
T Consensus 84 liDtPGh-~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~ 162 (406)
T TIGR03680 84 FVDAPGH-ETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKALENYEEIKEF 162 (406)
T ss_pred EEECCCH-HHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHHHHHHHHHHhh
Confidence 6789999 678889999999999999999999765 222 222333344567999999999987543322 2222
Q ss_pred HHhh---CceEEEecCcCCCcchhhhHHHHHhh
Q 020668 172 FAKQ---GTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 172 ~~~~---g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
+... +..++++||++|+|+++|++.|....
T Consensus 163 l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 163 VKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred hhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 2221 35789999999999999998887643
No 85
>CHL00071 tufA elongation factor Tu
Probab=98.92 E-value=8.3e-09 Score=101.64 Aligned_cols=117 Identities=17% Similarity=0.079 Sum_probs=88.0
Q ss_pred CcchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--C
Q 020668 72 GSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N 147 (323)
Q Consensus 72 ~~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~ 147 (323)
..|-...|++.+.+++..+..|...-+. +-+.||| .++.+.+...+..+|++++|+|+..+......++..++. +
T Consensus 49 ~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh-~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g 127 (409)
T CHL00071 49 EIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGH-ADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVG 127 (409)
T ss_pred cccCChhhhcCCEeEEccEEEEccCCeEEEEEECCCh-HHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcC
Confidence 4566778999999999998888765443 7799998 678889999999999999999999877655555544443 5
Q ss_pred CC-eEEEEeccCCccHHhHH-----HHHHHHHhhC-----ceEEEecCcCCCc
Q 020668 148 RK-RILVLNREDMISMADRN-----AWATYFAKQG-----TKVIFSNGQLGMG 189 (323)
Q Consensus 148 k~-~iiVlNK~DLl~~~~~~-----~~~~~~~~~g-----~~vi~iSa~~g~g 189 (323)
+| +|+++||+|+++.++.. +..++++..+ ..++++|+.+|.+
T Consensus 128 ~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 128 VPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred CCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhccc
Confidence 67 67899999998754422 2333444433 4689999998864
No 86
>PLN03127 Elongation factor Tu; Provisional
Probab=98.92 E-value=8.6e-09 Score=102.57 Aligned_cols=128 Identities=16% Similarity=0.057 Sum_probs=91.2
Q ss_pred CcchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--C
Q 020668 72 GSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N 147 (323)
Q Consensus 72 ~~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~ 147 (323)
..|....|++.+.+++..+..|.++.+. +.+.||| .++.+++...+..+|++++|+|++.+....+.++..++. +
T Consensus 98 ~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh-~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~g 176 (447)
T PLN03127 98 EIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGH-ADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVG 176 (447)
T ss_pred cccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCc-cchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcC
Confidence 4677889999999999999999877554 7799999 568888888889999999999999887665555555543 5
Q ss_pred CC-eEEEEeccCCccHHhHHHH-----HHHHHhhC-----ceEEEecCc---CCCc-------chhhhHHHHHh
Q 020668 148 RK-RILVLNREDMISMADRNAW-----ATYFAKQG-----TKVIFSNGQ---LGMG-------TMKLSRLAKAL 200 (323)
Q Consensus 148 k~-~iiVlNK~DLl~~~~~~~~-----~~~~~~~g-----~~vi~iSa~---~g~g-------i~~L~~~l~~l 200 (323)
.| +|+++||+|+++.++..+. .+.+...+ ..++++|+. +|.| +..|++.+.++
T Consensus 177 ip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~ 250 (447)
T PLN03127 177 VPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEY 250 (447)
T ss_pred CCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHh
Confidence 67 5789999999865432222 12222222 457777765 4544 44555555544
No 87
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.92 E-value=1.7e-08 Score=87.11 Aligned_cols=128 Identities=15% Similarity=0.036 Sum_probs=84.7
Q ss_pred CcchhhHhhhcccccCcceeeeeccc--cccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--C
Q 020668 72 GSIEAYEEECDWADLDADLYYWTKSL--RPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N 147 (323)
Q Consensus 72 ~~~~~~~e~e~~~~~~~~~~~~~~~l--~~i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~ 147 (323)
+.+..+.+.+...+++..+....... -.+-++||+ .++.+.....+..+|.+++|+|+..+.......+...+. +
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~-~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~ 114 (189)
T cd00881 36 FLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGH-EDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGG 114 (189)
T ss_pred cccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCc-HHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCC
Confidence 34445556666655554433333222 225678998 456666777789999999999998876555444444443 7
Q ss_pred CCeEEEEeccCCccHHhHHH----HHHHHHh--------------hCceEEEecCcCCCcchhhhHHHHHh
Q 020668 148 RKRILVLNREDMISMADRNA----WATYFAK--------------QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 148 k~~iiVlNK~DLl~~~~~~~----~~~~~~~--------------~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
+|+++|+||+|+....+... ..+.+.. ....++++|+++|.|++++++.+...
T Consensus 115 ~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~ 185 (189)
T cd00881 115 LPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEH 185 (189)
T ss_pred CCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhh
Confidence 89999999999987433222 2222222 23678999999999999988776544
No 88
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.92 E-value=1.6e-08 Score=99.13 Aligned_cols=116 Identities=18% Similarity=0.072 Sum_probs=85.1
Q ss_pred CcchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--C
Q 020668 72 GSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N 147 (323)
Q Consensus 72 ~~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~ 147 (323)
+.|....|++.+.+++..+..|.+.-+. +-+.||| .++.+++...+..+|.+++|+|++.+......+...++. +
T Consensus 49 ~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh-~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~g 127 (394)
T TIGR00485 49 QIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGH-ADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVG 127 (394)
T ss_pred cccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCch-HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcC
Confidence 5678888999999999999998765443 7789999 678888888899999999999999876544434333332 5
Q ss_pred CCeE-EEEeccCCccHHhHH-----HHHHHHHhhC-----ceEEEecCcCCC
Q 020668 148 RKRI-LVLNREDMISMADRN-----AWATYFAKQG-----TKVIFSNGQLGM 188 (323)
Q Consensus 148 k~~i-iVlNK~DLl~~~~~~-----~~~~~~~~~g-----~~vi~iSa~~g~ 188 (323)
.|.+ +++||+|+++.++.. +..+++...+ .+++++|+.+|.
T Consensus 128 i~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 128 VPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred CCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEEECcccccc
Confidence 5654 689999998754322 2333344333 578999999874
No 89
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.92 E-value=1.3e-08 Score=87.53 Aligned_cols=98 Identities=19% Similarity=0.170 Sum_probs=68.3
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHH-h-CCCCeEEEEeccCCccHHhHHHHHHHH-HhhC
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW-L-GNRKRILVLNREDMISMADRNAWATYF-AKQG 176 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~-l-~~k~~iiVlNK~DLl~~~~~~~~~~~~-~~~g 176 (323)
+-++||| .++...+...+..+|++|+|+|+..+.+..+...... . .++|+++|+||+|+.+.... +..+.+ +.++
T Consensus 71 l~Dt~G~-~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~-~~~~~~~~~~~ 148 (179)
T cd01890 71 LIDTPGH-VDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPE-RVKQQIEDVLG 148 (179)
T ss_pred EEECCCC-hhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHH-HHHHHHHHHhC
Confidence 5578999 5677777888999999999999987665444332222 2 36899999999998643211 111122 2233
Q ss_pred c---eEEEecCcCCCcchhhhHHHHH
Q 020668 177 T---KVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 177 ~---~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
. .++.+||++|.|+++|.+.+.+
T Consensus 149 ~~~~~~~~~Sa~~g~gi~~l~~~l~~ 174 (179)
T cd01890 149 LDPSEAILVSAKTGLGVEDLLEAIVE 174 (179)
T ss_pred CCcccEEEeeccCCCCHHHHHHHHHh
Confidence 3 4899999999999998877654
No 90
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.91 E-value=1.7e-09 Score=97.19 Aligned_cols=63 Identities=27% Similarity=0.394 Sum_probs=42.4
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccC-CCCceeeEEEEE---eCCcEEEEecCCccCCCCCCH
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAP-RPGVTRVLKWVR---FGKDLEFLDSPGIIPMRISDQ 280 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~-~pgtT~~~~~~~---~~~~~~liDTPGi~~~~~~d~ 280 (323)
++|+++|.+|+||||++|+|+++..+.++. ...+|...+... .+..+.+|||||+......+.
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~ 67 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDE 67 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHH
Confidence 479999999999999999999998877653 334566554332 267899999999987665443
No 91
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.91 E-value=3.5e-09 Score=107.78 Aligned_cols=64 Identities=23% Similarity=0.310 Sum_probs=50.3
Q ss_pred CccceEeeeecCCCCChhhHHHhhhcCccccccCC-CCceeeEEEE--EeCCcEEEEecCCccCCCC
Q 020668 214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPR-PGVTRVLKWV--RFGKDLEFLDSPGIIPMRI 277 (323)
Q Consensus 214 ~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~-pgtT~~~~~~--~~~~~~~liDTPGi~~~~~ 277 (323)
+...++|+++|.|||||||++|+|+++..+.++.. ++||+..... ..+..+.+|||||+.....
T Consensus 115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~ 181 (763)
T TIGR00993 115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSAS 181 (763)
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCcccc
Confidence 34567899999999999999999999988877765 6777643332 2356799999999997643
No 92
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.90 E-value=7.8e-10 Score=108.36 Aligned_cols=73 Identities=27% Similarity=0.379 Sum_probs=58.0
Q ss_pred ccceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEeC---CcEEEEecCCccCCCCCCHHHHHHHHh
Q 020668 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG---KDLEFLDSPGIIPMRISDQAAAIKLAI 288 (323)
Q Consensus 215 ~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~---~~~~liDTPGi~~~~~~d~~~~~~La~ 288 (323)
+...+..+||+|||||||++|.+.... ..+.++++||+.+-.-+++ -.++++|||||+...++|....+++++
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtrad-vevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsI 241 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRAD-DEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQII 241 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccccc-cccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHH
Confidence 445678999999999999999999654 4899999999986544443 347799999999888887776666543
No 93
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.90 E-value=1.7e-09 Score=103.87 Aligned_cols=56 Identities=36% Similarity=0.472 Sum_probs=46.5
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEE--EEe--CCcEEEEecCCccC
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF--GKDLEFLDSPGIIP 274 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~--~~~~~liDTPGi~~ 274 (323)
..|+|||+||||||||||+|.+.+ ..+++.|+||++... +.. +..+.++||||++.
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~-~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ 218 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIE 218 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCC-CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccC
Confidence 359999999999999999999865 578999999999643 333 34699999999974
No 94
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.89 E-value=1.7e-09 Score=92.11 Aligned_cols=54 Identities=35% Similarity=0.528 Sum_probs=42.9
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEE--EEe-CC-cEEEEecCCcc
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GK-DLEFLDSPGII 273 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~-~~~liDTPGi~ 273 (323)
+|+++|.+|||||||+|+|.+... .++..|++|++... +.. +. ++.++||||+.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~ 59 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLI 59 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCccc
Confidence 489999999999999999997654 67888898876432 222 33 78899999985
No 95
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.88 E-value=2.3e-09 Score=105.75 Aligned_cols=55 Identities=33% Similarity=0.471 Sum_probs=46.3
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEE--e--CCcEEEEecCCccC
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F--GKDLEFLDSPGIIP 274 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~--~--~~~~~liDTPGi~~ 274 (323)
.|+|||+||||||||||+|.+.+ .++++.|+||+...... . +..+.++||||+..
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak-~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGlie 218 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAK-PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIE 218 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCC-CccccCCcceeceEEEEEEEeCCceEEEEECCCCcc
Confidence 59999999999999999999865 47889999999865432 2 45799999999974
No 96
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.88 E-value=2e-08 Score=93.47 Aligned_cols=103 Identities=16% Similarity=0.070 Sum_probs=72.3
Q ss_pred ccccchHH-------HHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCeEEEEeccCCccHHhHHHHHHH
Q 020668 101 QWYPGHIA-------KTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATY 171 (323)
Q Consensus 101 ~~~PGh~~-------k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~iiVlNK~DLl~~~~~~~~~~~ 171 (323)
.++||+.. ...+.+...+..+|++++|+|++.+.... ..+...+. ++|+++|+||+|+.+..+.......
T Consensus 53 vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~ 131 (270)
T TIGR00436 53 IDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFKDKLLPLIDK 131 (270)
T ss_pred EECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCCHHHHHHHHHH
Confidence 35677532 12344566789999999999998765433 44444443 6899999999999866554444333
Q ss_pred HHh-hC-ceEEEecCcCCCcchhhhHHHHHhhhhh
Q 020668 172 FAK-QG-TKVIFSNGQLGMGTMKLSRLAKALASDV 204 (323)
Q Consensus 172 ~~~-~g-~~vi~iSa~~g~gi~~L~~~l~~l~~~~ 204 (323)
+.+ .+ ..++++||++|.|+++|.+.+.+..+..
T Consensus 132 ~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~ 166 (270)
T TIGR00436 132 YAILEDFKDIVPISALTGDNTSFLAAFIEVHLPEG 166 (270)
T ss_pred HHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCCC
Confidence 333 23 3789999999999999999888776543
No 97
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.88 E-value=1.9e-09 Score=107.93 Aligned_cols=57 Identities=37% Similarity=0.551 Sum_probs=46.9
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEE--EEe-CCcEEEEecCCccC
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIP 274 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~~~~liDTPGi~~ 274 (323)
...|+|||+||||||||||+|.+.+ .++++.|+||++... +.. +..+.|+||||++.
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~ak-pkIadypfTTl~P~lGvv~~~~~~f~laDtPGlie 218 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAK-PKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIP 218 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCC-ccccccCcccccceEEEEEECCeEEEEEECCCCcc
Confidence 3469999999999999999999865 478999999998543 333 34689999999974
No 98
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.87 E-value=3.1e-09 Score=88.66 Aligned_cols=58 Identities=36% Similarity=0.483 Sum_probs=47.3
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEE--e-CCcEEEEecCCccCC
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIPM 275 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~--~-~~~~~liDTPGi~~~ 275 (323)
++|+++|.+|+|||||+|+|.+.....+++.|++|++..... . +..+.++||||+...
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~ 62 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRET 62 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCC
Confidence 479999999999999999999887667788999998864322 2 346889999998643
No 99
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.87 E-value=3e-09 Score=106.61 Aligned_cols=57 Identities=39% Similarity=0.525 Sum_probs=48.3
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEE---eCCcEEEEecCCcc
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR---FGKDLEFLDSPGII 273 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~---~~~~~~liDTPGi~ 273 (323)
..+|++||.||||||||+|+|++.....+++.||+|++..... .+..+.|+||||+.
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~ 97 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWE 97 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcC
Confidence 4679999999999999999999887677889999999865433 25678899999986
No 100
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.86 E-value=1.8e-08 Score=84.20 Aligned_cols=97 Identities=23% Similarity=0.224 Sum_probs=72.6
Q ss_pred cccccchHHH-------HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCeEEEEeccCCccHHhHHHHHH
Q 020668 100 VQWYPGHIAK-------TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWAT 170 (323)
Q Consensus 100 i~~~PGh~~k-------~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~iiVlNK~DLl~~~~~~~~~~ 170 (323)
+-++||+-.. ..+.....+..+|++++|+|++.+.+..+..+.+++. +.|+++|+||+|+.+.... ..
T Consensus 49 i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~---~~ 125 (157)
T cd01894 49 LIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE---AA 125 (157)
T ss_pred EEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH---HH
Confidence 5567887331 2334456678999999999999888777777777765 6899999999999876543 23
Q ss_pred HHHhhCc-eEEEecCcCCCcchhhhHHHHH
Q 020668 171 YFAKQGT-KVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 171 ~~~~~g~-~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
.+.+.+. .++++|+++|.|++++.+.+.+
T Consensus 126 ~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 155 (157)
T cd01894 126 EFYSLGFGEPIPISAEHGRGIGDLLDAILE 155 (157)
T ss_pred HHHhcCCCCeEEEecccCCCHHHHHHHHHh
Confidence 3444554 7899999999999998877653
No 101
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.85 E-value=2.4e-08 Score=84.22 Aligned_cols=98 Identities=20% Similarity=0.220 Sum_probs=78.7
Q ss_pred cccccchH---HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCeEEEEeccCCc-cHHhHHHHHHHHHhh
Q 020668 100 VQWYPGHI---AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMI-SMADRNAWATYFAKQ 175 (323)
Q Consensus 100 i~~~PGh~---~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~iiVlNK~DLl-~~~~~~~~~~~~~~~ 175 (323)
+.+.||.- ..+.+.+.....+||+|++|.|+..+.....+.+...+ ++|+|=|+||+|+. +..+.+...++++..
T Consensus 40 ~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~f-~~pvIGVITK~Dl~~~~~~i~~a~~~L~~a 118 (143)
T PF10662_consen 40 TIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPPGFASMF-NKPVIGVITKIDLPSDDANIERAKKWLKNA 118 (143)
T ss_pred EEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCchhhccc-CCCEEEEEECccCccchhhHHHHHHHHHHc
Confidence 46778763 34566677778899999999999999888888888776 68999999999998 444455555666666
Q ss_pred C-ceEEEecCcCCCcchhhhHHHH
Q 020668 176 G-TKVIFSNGQLGMGTMKLSRLAK 198 (323)
Q Consensus 176 g-~~vi~iSa~~g~gi~~L~~~l~ 198 (323)
| .+++.+|+.+|+|+++|++.|+
T Consensus 119 G~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 119 GVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred CCCCeEEEECCCCcCHHHHHHHHh
Confidence 7 4579999999999999998875
No 102
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.84 E-value=4e-09 Score=89.23 Aligned_cols=58 Identities=38% Similarity=0.501 Sum_probs=47.3
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEE--EE-eCCcEEEEecCCccC
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VR-FGKDLEFLDSPGIIP 274 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~-~~~~~~liDTPGi~~ 274 (323)
+++|+++|.+|+|||||+|+|++.....+++.|++|++... +. .+..+.++||||+..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~ 62 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRR 62 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCcc
Confidence 56899999999999999999998876677888999888532 22 245688999999864
No 103
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.84 E-value=4.5e-09 Score=89.46 Aligned_cols=54 Identities=41% Similarity=0.629 Sum_probs=43.5
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe---CCcEEEEecCCcc
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~liDTPGi~ 273 (323)
+|+++|.+|||||||+|+|.+... .+++.|++|++...-.. +.++.++||||+.
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~ 58 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKP-EVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLL 58 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCC-ccCCCCCcccceeEEEEccCceEEEEEECCCcC
Confidence 589999999999999999998653 56677888887654332 3578999999985
No 104
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.84 E-value=3.3e-09 Score=88.64 Aligned_cols=54 Identities=46% Similarity=0.693 Sum_probs=44.2
Q ss_pred eeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe---CCcEEEEecCCccC
Q 020668 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (323)
Q Consensus 221 ~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~liDTPGi~~ 274 (323)
+++|.+|||||||+|+|.+.....++..|++|++...... +..+.++||||+..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~ 57 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEP 57 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCC
Confidence 4899999999999999998876677888999987544322 45688999999974
No 105
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.83 E-value=2e-08 Score=99.04 Aligned_cols=101 Identities=17% Similarity=0.121 Sum_probs=72.0
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC-CCCcHHHHHH---hCCCCeEEEEeccCCccHHhHH----HHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-STTHPLMDQW---LGNRKRILVLNREDMISMADRN----AWATY 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~-~~~~~~i~~~---l~~k~~iiVlNK~DLl~~~~~~----~~~~~ 171 (323)
+-+.||| .++.+++...+..+|++++|+|++.+. .........+ +..+++++|+||+|+.+.++.. +..+.
T Consensus 89 liDtPG~-~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~ 167 (411)
T PRK04000 89 FVDAPGH-ETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERALENYEQIKEF 167 (411)
T ss_pred EEECCCH-HHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhHHHHHHHHHHH
Confidence 6678999 678888888889999999999999775 3332222222 2345789999999998754322 22222
Q ss_pred HHh---hCceEEEecCcCCCcchhhhHHHHHhh
Q 020668 172 FAK---QGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 172 ~~~---~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
+.. .+..++++||++|.|+++|++.|....
T Consensus 168 l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 168 VKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred hccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 222 135789999999999999988887643
No 106
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.83 E-value=3.5e-08 Score=81.86 Aligned_cols=97 Identities=15% Similarity=0.071 Sum_probs=66.7
Q ss_pred cccccchHH---HHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCeEEEEeccCCccHHh-HHHHHHHHHhh
Q 020668 100 VQWYPGHIA---KTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMAD-RNAWATYFAKQ 175 (323)
Q Consensus 100 i~~~PGh~~---k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~iiVlNK~DLl~~~~-~~~~~~~~~~~ 175 (323)
+-+.||... ...+.+...++++|++++|+|+.++.+..+..+...+ .+|+++|+||+|+.+... .+...++++..
T Consensus 39 ~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~-~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~ 117 (142)
T TIGR02528 39 AIDTPGEYVENRRLYSALIVTAADADVIALVQSATDPESRFPPGFASIF-VKPVIGLVTKIDLAEADVDIERAKELLETA 117 (142)
T ss_pred eecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHhc-cCCeEEEEEeeccCCcccCHHHHHHHHHHc
Confidence 446777631 2233344457999999999999988877665555443 469999999999975322 22222334444
Q ss_pred Cc-eEEEecCcCCCcchhhhHHH
Q 020668 176 GT-KVIFSNGQLGMGTMKLSRLA 197 (323)
Q Consensus 176 g~-~vi~iSa~~g~gi~~L~~~l 197 (323)
+. .++.+||++|.|+++|.+.+
T Consensus 118 ~~~~~~~~Sa~~~~gi~~l~~~l 140 (142)
T TIGR02528 118 GAEPIFEISSVDEQGLEALVDYL 140 (142)
T ss_pred CCCcEEEEecCCCCCHHHHHHHH
Confidence 54 68999999999999887664
No 107
>PLN03126 Elongation factor Tu; Provisional
Probab=98.82 E-value=3.4e-08 Score=99.02 Aligned_cols=116 Identities=16% Similarity=0.057 Sum_probs=85.3
Q ss_pred CcchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CC
Q 020668 72 GSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GN 147 (323)
Q Consensus 72 ~~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~ 147 (323)
+.|-...|++.+.+++..+.+|.++-+. +-+.||| .++.+++...+..+|++++|+|+..+......+....+ .+
T Consensus 118 ~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh-~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~g 196 (478)
T PLN03126 118 EIDAAPEERARGITINTATVEYETENRHYAHVDCPGH-ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVG 196 (478)
T ss_pred cccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCH-HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcC
Confidence 5677788999999999999888766444 7789999 67888999999999999999999987654433333332 25
Q ss_pred CC-eEEEEeccCCccHHhHH-----HHHHHHHhhC-----ceEEEecCcCCC
Q 020668 148 RK-RILVLNREDMISMADRN-----AWATYFAKQG-----TKVIFSNGQLGM 188 (323)
Q Consensus 148 k~-~iiVlNK~DLl~~~~~~-----~~~~~~~~~g-----~~vi~iSa~~g~ 188 (323)
+| +++++||+|+++.++.. +..+++.+.| ..++++|+.+|.
T Consensus 197 i~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 197 VPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLAL 248 (478)
T ss_pred CCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEccccc
Confidence 56 77899999998754321 2233344433 468899998874
No 108
>PRK00049 elongation factor Tu; Reviewed
Probab=98.81 E-value=3.3e-08 Score=96.99 Aligned_cols=128 Identities=18% Similarity=0.086 Sum_probs=92.8
Q ss_pred CcchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--C
Q 020668 72 GSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N 147 (323)
Q Consensus 72 ~~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~ 147 (323)
+.|-...|++.+.+++..+..|.+.-+. +-+.||| .++.+++...+..+|++++|+|+..+.......+..++. +
T Consensus 49 ~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~-~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g 127 (396)
T PRK00049 49 QIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGH-ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG 127 (396)
T ss_pred hccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCH-HHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcC
Confidence 5677788999999999999988765443 7799999 678888889999999999999999877655555555543 6
Q ss_pred CCeE-EEEeccCCccHHhHH-----HHHHHHHhhC-----ceEEEecCcCCC----------cchhhhHHHHHh
Q 020668 148 RKRI-LVLNREDMISMADRN-----AWATYFAKQG-----TKVIFSNGQLGM----------GTMKLSRLAKAL 200 (323)
Q Consensus 148 k~~i-iVlNK~DLl~~~~~~-----~~~~~~~~~g-----~~vi~iSa~~g~----------gi~~L~~~l~~l 200 (323)
+|.+ +++||+|+++.++.. +..+++...+ ..++++|+.++. |+..|++.|.+.
T Consensus 128 ~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 128 VPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred CCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence 7865 589999998643321 2223343333 468899999875 345566665553
No 109
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.81 E-value=8.1e-09 Score=86.62 Aligned_cols=52 Identities=42% Similarity=0.663 Sum_probs=42.2
Q ss_pred eecCCCCChhhHHHhhhcCccccccCCCCceeeEEE--EEe-CCcEEEEecCCccC
Q 020668 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIP 274 (323)
Q Consensus 222 ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~~~~liDTPGi~~ 274 (323)
++|.+|||||||+|+|.+.. ..++..||+|++... +.. +.++.++||||+..
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~ 55 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYS 55 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccc
Confidence 58999999999999999875 577888999988532 333 45789999999864
No 110
>PRK12735 elongation factor Tu; Reviewed
Probab=98.81 E-value=3.4e-08 Score=96.91 Aligned_cols=128 Identities=18% Similarity=0.087 Sum_probs=90.6
Q ss_pred CcchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--C
Q 020668 72 GSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N 147 (323)
Q Consensus 72 ~~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~ 147 (323)
+.|....|++.+.+++..+..|...-+. +-+.||| .++.+++...+..+|++++|+|+..+......+...++. +
T Consensus 49 ~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh-~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~g 127 (396)
T PRK12735 49 QIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGH-ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG 127 (396)
T ss_pred hccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCH-HHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcC
Confidence 4577778999999999988888765443 6799999 678889999999999999999998866544333333332 5
Q ss_pred CCeE-EEEeccCCccHHhHH-----HHHHHHHhhC-----ceEEEecCcCCC----------cchhhhHHHHHh
Q 020668 148 RKRI-LVLNREDMISMADRN-----AWATYFAKQG-----TKVIFSNGQLGM----------GTMKLSRLAKAL 200 (323)
Q Consensus 148 k~~i-iVlNK~DLl~~~~~~-----~~~~~~~~~g-----~~vi~iSa~~g~----------gi~~L~~~l~~l 200 (323)
.|.+ +++||+|+++.++.. +..+++...+ +.++++|+.+|. ++..|++.+..+
T Consensus 128 i~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~ 201 (396)
T PRK12735 128 VPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY 201 (396)
T ss_pred CCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence 6755 579999998643322 2222333332 568999999984 456666666554
No 111
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.79 E-value=1e-08 Score=90.72 Aligned_cols=57 Identities=28% Similarity=0.318 Sum_probs=43.0
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEE--EEe-CC-cEEEEecCCccC
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GK-DLEFLDSPGIIP 274 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~-~~~liDTPGi~~ 274 (323)
.++|+++|.+|||||||+|+|.+.. +.+.+.+++|.+... +.. +. .+.++||||+..
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~ 101 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGAD-VYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIR 101 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcch-hccCCccceeccceeEEEEecCCceEEEeCCCcccc
Confidence 4689999999999999999999865 345566677766432 222 32 688999999964
No 112
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.79 E-value=1.1e-08 Score=85.58 Aligned_cols=58 Identities=36% Similarity=0.588 Sum_probs=45.7
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe---CCcEEEEecCCccC
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~liDTPGi~~ 274 (323)
..+|+++|.+|+|||||+|+|++.....+++.+++|+....... +..+.++||||+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 63 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHK 63 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCc
Confidence 45799999999999999999999877667777788876433222 24688999999864
No 113
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.79 E-value=1e-09 Score=100.78 Aligned_cols=66 Identities=26% Similarity=0.291 Sum_probs=49.2
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceee----EEEEEeCCcEEEEecCCccCCCCCCHHH
Q 020668 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV----LKWVRFGKDLEFLDSPGIIPMRISDQAA 282 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~----~~~~~~~~~~~liDTPGi~~~~~~d~~~ 282 (323)
.+++|.++|.||+|||||||+|+......++..+-+|.. .+.+. ++.+.|+||||+-..+-.|.++
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~-~~~l~lwDtPG~gdg~~~D~~~ 107 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYD-GENLVLWDTPGLGDGKDKDAEH 107 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhcc-ccceEEecCCCcccchhhhHHH
Confidence 478999999999999999999997766666665544433 33333 5789999999998665555433
No 114
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.79 E-value=6.2e-09 Score=99.69 Aligned_cols=56 Identities=36% Similarity=0.525 Sum_probs=46.0
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEE--EEeC--CcEEEEecCCccC
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG--KDLEFLDSPGIIP 274 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~--~~~~liDTPGi~~ 274 (323)
..|+|||+||||||||+|+|.+.+ ..+++.|+||+.... +.++ ..+.++||||+..
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~-~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~ 217 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIE 217 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCC-ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCccc
Confidence 359999999999999999999765 478999999988543 3433 5789999999974
No 115
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.79 E-value=1.1e-08 Score=103.98 Aligned_cols=57 Identities=35% Similarity=0.517 Sum_probs=48.2
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEE---EeCCcEEEEecCCccCC
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV---RFGKDLEFLDSPGIIPM 275 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~---~~~~~~~liDTPGi~~~ 275 (323)
.+|+++|.||||||||+|+|.|.+ ..|++.||+|-+...- ..++.+.++|.||+.+.
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~-q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL 63 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGAN-QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSL 63 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccC-ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCC
Confidence 459999999999999999999876 4999999999886442 23667999999999854
No 116
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.78 E-value=8.7e-09 Score=86.52 Aligned_cols=55 Identities=31% Similarity=0.564 Sum_probs=46.9
Q ss_pred eeeecCCCCChhhHHHhhhc-CccccccCCCCceeeEEEEEeCCcEEEEecCCccC
Q 020668 220 AGIVGYPNVGKSSLINRLLK-RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIP 274 (323)
Q Consensus 220 v~ivG~pNvGKSSLiN~L~~-~~~~~v~~~pgtT~~~~~~~~~~~~~liDTPGi~~ 274 (323)
|+++|.+|+|||||+|+|.+ ......+..+++|.....+.....+.++||||+..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~ 57 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGY 57 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCccc
Confidence 78999999999999999994 44446778889999887777777899999999864
No 117
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.77 E-value=8.3e-09 Score=101.11 Aligned_cols=56 Identities=30% Similarity=0.400 Sum_probs=44.5
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEE--EEe-------------------------CCcEEEEecC
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-------------------------GKDLEFLDSP 270 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-------------------------~~~~~liDTP 270 (323)
++|++||.||||||||+|+|.+.. ..++++||||++... ... ...+.++|||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~-~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLAD-VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc-ccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 579999999999999999999875 477899999987432 111 1236799999
Q ss_pred CccC
Q 020668 271 GIIP 274 (323)
Q Consensus 271 Gi~~ 274 (323)
|+..
T Consensus 81 Gl~~ 84 (396)
T PRK09602 81 GLVP 84 (396)
T ss_pred CcCC
Confidence 9975
No 118
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.76 E-value=6.6e-09 Score=88.76 Aligned_cols=51 Identities=39% Similarity=0.583 Sum_probs=41.4
Q ss_pred eecCCCCChhhHHHhhhcCccccccCCCCceeeEEE--EEe--CCcEEEEecCCcc
Q 020668 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF--GKDLEFLDSPGII 273 (323)
Q Consensus 222 ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~--~~~~~liDTPGi~ 273 (323)
++|.+|||||||+|+|.+... .++..+++|++... +.. +..+.++||||+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~ 55 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLI 55 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccc
Confidence 589999999999999998765 67888999987532 222 5678999999985
No 119
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.75 E-value=1e-08 Score=107.65 Aligned_cols=57 Identities=42% Similarity=0.578 Sum_probs=48.7
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe---CCcEEEEecCCccC
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~liDTPGi~~ 274 (323)
.+|+++|.||||||||+|+|++.....+++.||+|++...... +..+.++||||+..
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~ 335 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEA 335 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCC
Confidence 5799999999999999999999877788999999999654332 45788999999863
No 120
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=7.8e-08 Score=93.47 Aligned_cols=131 Identities=21% Similarity=0.187 Sum_probs=104.4
Q ss_pred CCcchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC---CCCcHHHHHHh
Q 020668 71 NGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL---STTHPLMDQWL 145 (323)
Q Consensus 71 ~~~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~---~~~~~~i~~~l 145 (323)
.-.|-..+|.+.++++|-.|.||...-.. +.+.||| .++.+.|...+.-.|..++|||+.+++ +.++..+.+++
T Consensus 23 ~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh-~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdll 101 (447)
T COG3276 23 GVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGH-PDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLL 101 (447)
T ss_pred cccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCc-HHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhc
Confidence 34566778889999999999999877443 7788999 788899999999999999999997665 44566677777
Q ss_pred CCCCeEEEEeccCCccHHhHHHHHHHHHh-h---CceEEEecCcCCCcchhhhHHHHHhhh
Q 020668 146 GNRKRILVLNREDMISMADRNAWATYFAK-Q---GTKVIFSNGQLGMGTMKLSRLAKALAS 202 (323)
Q Consensus 146 ~~k~~iiVlNK~DLl~~~~~~~~~~~~~~-~---g~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (323)
+.+..++|+||+|.++....++..+.+.. . ..+++.+|+..|+||++|++.|.++..
T Consensus 102 gi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 102 GIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred CCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence 88888999999999987655544443322 1 145788999999999999999988874
No 121
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.74 E-value=6.7e-08 Score=85.09 Aligned_cols=117 Identities=19% Similarity=0.118 Sum_probs=75.4
Q ss_pred HhhhcccccCcceeeeecccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCeEEE
Q 020668 78 EEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILV 153 (323)
Q Consensus 78 ~e~e~~~~~~~~~~~~~~~l~--~i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~iiV 153 (323)
.|+..+.+++........... .+-++||| .++...+...+..+|.+++|+|+..+.......+...+ .++|+++|
T Consensus 45 ~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~-~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv 123 (194)
T cd01891 45 LERERGITILAKNTAVTYKDTKINIVDTPGH-ADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVV 123 (194)
T ss_pred hHHhcccccccceeEEEECCEEEEEEECCCc-HHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEE
Confidence 344555555544433333222 36678999 56777788889999999999999875433222222222 36899999
Q ss_pred EeccCCccHH---hHHHHHHHHHh-------hCceEEEecCcCCCcchhhhH
Q 020668 154 LNREDMISMA---DRNAWATYFAK-------QGTKVIFSNGQLGMGTMKLSR 195 (323)
Q Consensus 154 lNK~DLl~~~---~~~~~~~~~~~-------~g~~vi~iSa~~g~gi~~L~~ 195 (323)
+||+|+.... ..+++.+.+.. .+..++++||++|.|+.++.+
T Consensus 124 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~~ 175 (194)
T cd01891 124 INKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNLED 175 (194)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccccccc
Confidence 9999996432 13344444422 246789999999999866533
No 122
>PRK00089 era GTPase Era; Reviewed
Probab=98.72 E-value=1.2e-07 Score=88.99 Aligned_cols=93 Identities=18% Similarity=0.185 Sum_probs=71.3
Q ss_pred HHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCeEEEEeccCCc-cHHhHHHHHHHHHhh-C-ceEEEecCc
Q 020668 111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI-SMADRNAWATYFAKQ-G-TKVIFSNGQ 185 (323)
Q Consensus 111 ~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~iiVlNK~DLl-~~~~~~~~~~~~~~~-g-~~vi~iSa~ 185 (323)
.+.....+..+|++++|+|+..+++..+..+.+.+. ++|+++|+||+|+. +..+.....+.+.+. + ..++++||+
T Consensus 75 ~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~ 154 (292)
T PRK00089 75 NKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISAL 154 (292)
T ss_pred HHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCC
Confidence 344556788999999999999877766667766665 57999999999998 445555555555542 2 568999999
Q ss_pred CCCcchhhhHHHHHhhhh
Q 020668 186 LGMGTMKLSRLAKALASD 203 (323)
Q Consensus 186 ~g~gi~~L~~~l~~l~~~ 203 (323)
++.|+++|.+.+.+..+.
T Consensus 155 ~~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 155 KGDNVDELLDVIAKYLPE 172 (292)
T ss_pred CCCCHHHHHHHHHHhCCC
Confidence 999999999888776543
No 123
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.71 E-value=1.9e-08 Score=106.01 Aligned_cols=57 Identities=32% Similarity=0.530 Sum_probs=47.3
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe---CCcEEEEecCCccCC
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM 275 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~liDTPGi~~~ 275 (323)
++|+++|.||||||||+|+|.+.+. .+++.||+|.+.....+ +..+.++||||+...
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl 63 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSL 63 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCcccc
Confidence 5799999999999999999998754 78999999998643222 457899999999753
No 124
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.71 E-value=2.9e-09 Score=99.68 Aligned_cols=56 Identities=30% Similarity=0.303 Sum_probs=42.0
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEE----EEEeCCcEEEEecCCccC
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK----WVRFGKDLEFLDSPGIIP 274 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~----~~~~~~~~~liDTPGi~~ 274 (323)
..|++|||+|+|||||||+|.+. .....++.+-|.|.. ..+-++.+.+.||.||+.
T Consensus 179 pviavVGYTNaGKsTLikaLT~A-al~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFis 238 (410)
T KOG0410|consen 179 PVIAVVGYTNAGKSTLIKALTKA-ALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFIS 238 (410)
T ss_pred ceEEEEeecCccHHHHHHHHHhh-hcCccchhheeccchhhhccCCCCcEEEEeechhhhh
Confidence 35999999999999999999943 334555666666643 223366788999999984
No 125
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=2.3e-08 Score=99.75 Aligned_cols=124 Identities=21% Similarity=0.223 Sum_probs=95.7
Q ss_pred CCCCcchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC----------CC
Q 020668 69 NSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL----------ST 136 (323)
Q Consensus 69 ~~~~~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~----------~~ 136 (323)
++=..|+..+|||-+.+|+..--+|.++... +-++||| ..+..+|-..+..+|+.++|+|+..+. +.
T Consensus 226 yawiLDeT~eERerGvTm~v~~~~fes~~~~~tliDaPGh-kdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtr 304 (603)
T KOG0458|consen 226 YAWILDETKEERERGVTMDVKTTWFESKSKIVTLIDAPGH-KDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTR 304 (603)
T ss_pred eeEEeccchhhhhcceeEEeeeEEEecCceeEEEecCCCc-cccchhhhccccccceEEEEEECCcchhhhccCCCCchH
Confidence 3344588899999999999999999977554 8899998 889999999999999999999986432 33
Q ss_pred CcHHHHHHhCCCCeEEEEeccCCccHHh-----HHHHH-HHH-HhhC-----ceEEEecCcCCCcchhh
Q 020668 137 THPLMDQWLGNRKRILVLNREDMISMAD-----RNAWA-TYF-AKQG-----TKVIFSNGQLGMGTMKL 193 (323)
Q Consensus 137 ~~~~i~~~l~~k~~iiVlNK~DLl~~~~-----~~~~~-~~~-~~~g-----~~vi~iSa~~g~gi~~L 193 (323)
.+..+.+.++...+|+++||+|+++-++ +...+ .++ +..| ..++++|+..|+|+-+.
T Consensus 305 Eha~llr~Lgi~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 305 EHALLLRSLGISQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred HHHHHHHHcCcceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 4455677777889999999999997543 22222 233 2344 47999999999997543
No 126
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.70 E-value=1.2e-07 Score=97.59 Aligned_cols=131 Identities=15% Similarity=0.073 Sum_probs=89.9
Q ss_pred CCCcchhhHhhhcccccCcceeee--e---cccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH-H
Q 020668 70 SNGSIEAYEEECDWADLDADLYYW--T---KSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-M 141 (323)
Q Consensus 70 ~~~~~~~~~e~e~~~~~~~~~~~~--~---~~l~--~i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~-i 141 (323)
..|.|-...|++.++++......+ . .... .+-++||| .++...+...++.+|.+|+|+|+..+....... +
T Consensus 37 ~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~-~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~ 115 (595)
T TIGR01393 37 EQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH-VDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANV 115 (595)
T ss_pred ccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCc-HHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHH
Confidence 356677777899999888764433 2 1111 26688999 568888888999999999999999876544332 2
Q ss_pred HHHh-CCCCeEEEEeccCCccHHhHHHHHHHHH-hhCc---eEEEecCcCCCcchhhhHHHHHhhh
Q 020668 142 DQWL-GNRKRILVLNREDMISMADRNAWATYFA-KQGT---KVIFSNGQLGMGTMKLSRLAKALAS 202 (323)
Q Consensus 142 ~~~l-~~k~~iiVlNK~DLl~~~~~~~~~~~~~-~~g~---~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (323)
..++ .+.|+++|+||+|+..... ....+.+. .++. +++++||++|.|+++|++.+.+..+
T Consensus 116 ~~~~~~~ipiIiViNKiDl~~~~~-~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 116 YLALENDLEIIPVINKIDLPSADP-ERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred HHHHHcCCCEEEEEECcCCCccCH-HHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCC
Confidence 2222 3679999999999864321 11112222 1332 4899999999999999888766543
No 127
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.70 E-value=1.5e-07 Score=97.01 Aligned_cols=130 Identities=15% Similarity=0.074 Sum_probs=89.2
Q ss_pred CCcchhhHhhhcccccCccee--eeec---cc--cccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHH
Q 020668 71 NGSIEAYEEECDWADLDADLY--YWTK---SL--RPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQ 143 (323)
Q Consensus 71 ~~~~~~~~e~e~~~~~~~~~~--~~~~---~l--~~i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~ 143 (323)
.+.|-...|++.++++..... .|.. .- -.+-++||| .++...+...++.+|.+|+|+|+..+..........
T Consensus 42 ~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh-~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~ 120 (600)
T PRK05433 42 QVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH-VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY 120 (600)
T ss_pred ccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc-HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHH
Confidence 566777779999998887544 3321 11 126688999 567778888899999999999999876544332222
Q ss_pred -Hh-CCCCeEEEEeccCCccHHhHHHHHHHHHh-hCc---eEEEecCcCCCcchhhhHHHHHhhh
Q 020668 144 -WL-GNRKRILVLNREDMISMADRNAWATYFAK-QGT---KVIFSNGQLGMGTMKLSRLAKALAS 202 (323)
Q Consensus 144 -~l-~~k~~iiVlNK~DLl~~~~~~~~~~~~~~-~g~---~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (323)
+. .+.|+++|+||+|+..... ....+.+.+ ++. .++++||++|.|+.+|++.+....+
T Consensus 121 ~~~~~~lpiIvViNKiDl~~a~~-~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 121 LALENDLEIIPVLNKIDLPAADP-ERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred HHHHCCCCEEEEEECCCCCcccH-HHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 22 3789999999999864321 111122222 333 4899999999999999888766543
No 128
>PRK09866 hypothetical protein; Provisional
Probab=98.69 E-value=9.3e-08 Score=97.35 Aligned_cols=100 Identities=15% Similarity=0.062 Sum_probs=75.7
Q ss_pred cccccchHH----HHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--C--CCeEEEEeccCCcc-----HHhHH
Q 020668 100 VQWYPGHIA----KTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N--RKRILVLNREDMIS-----MADRN 166 (323)
Q Consensus 100 i~~~PGh~~----k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~--k~~iiVlNK~DLl~-----~~~~~ 166 (323)
+-++||-+. ...+.|.+.+.++|+|++|+|+..+.+..+..+.+.+. + .|+++|+||+|+.+ .+...
T Consensus 234 FVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreeddkE~Ll 313 (741)
T PRK09866 234 LLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDDADQVR 313 (741)
T ss_pred EEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcccchHHHHH
Confidence 557898854 24567788999999999999999888888888877775 3 49999999999975 23333
Q ss_pred HHHHH-HHhhC---ceEEEecCcCCCcchhhhHHHHH
Q 020668 167 AWATY-FAKQG---TKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 167 ~~~~~-~~~~g---~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
++.+. +.+.+ ..++++||+.|.|++.|++.+..
T Consensus 314 e~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 314 ALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred HHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 33332 22222 36999999999999999888776
No 129
>PRK15494 era GTPase Era; Provisional
Probab=98.69 E-value=9.6e-08 Score=91.89 Aligned_cols=105 Identities=16% Similarity=0.088 Sum_probs=74.4
Q ss_pred cccccchHH-------HHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCeEEEEeccCCccHHhHHHHHH
Q 020668 100 VQWYPGHIA-------KTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWAT 170 (323)
Q Consensus 100 i~~~PGh~~-------k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~iiVlNK~DLl~~~~~~~~~~ 170 (323)
+-++||... ...+.....+..+|++|+|+|+..++...+..+...+. +.|.++|+||+|+.+. ...+..+
T Consensus 104 ~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~-~~~~~~~ 182 (339)
T PRK15494 104 LYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK-YLNDIKA 182 (339)
T ss_pred EEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc-cHHHHHH
Confidence 446788632 23344445678999999999998877666555555543 5688999999998754 2334444
Q ss_pred HHHhhC--ceEEEecCcCCCcchhhhHHHHHhhhhhh
Q 020668 171 YFAKQG--TKVIFSNGQLGMGTMKLSRLAKALASDVN 205 (323)
Q Consensus 171 ~~~~~g--~~vi~iSa~~g~gi~~L~~~l~~l~~~~~ 205 (323)
++...+ ..++++||++|.|+++|.+.+.+..+...
T Consensus 183 ~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~ 219 (339)
T PRK15494 183 FLTENHPDSLLFPISALSGKNIDGLLEYITSKAKISP 219 (339)
T ss_pred HHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCCCC
Confidence 444433 46899999999999999998887765543
No 130
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.69 E-value=2.5e-08 Score=90.96 Aligned_cols=55 Identities=35% Similarity=0.547 Sum_probs=44.5
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEE--E-EeCCcEEEEecCCccC
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--V-RFGKDLEFLDSPGIIP 274 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~-~~~~~~~liDTPGi~~ 274 (323)
+|+++|.||+|||||+|+|.+.. ..++..|++|.+... + ..+..+.++||||+..
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~-~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~ 59 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK-SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIE 59 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ccccCCCCccccceEEEEEECCeEEEEEECCCccc
Confidence 58999999999999999999865 467888999976432 2 2356788999999864
No 131
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.69 E-value=4.1e-08 Score=80.87 Aligned_cols=55 Identities=38% Similarity=0.562 Sum_probs=44.5
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEE--EEeC---CcEEEEecCCcc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG---KDLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~---~~~~liDTPGi~ 273 (323)
+||+++|.+|+|||||+|+|.+.. ...+..+++|.+... +..+ ..+.++||||..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 61 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQE 61 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcc
Confidence 579999999999999999999877 677888888888644 3333 347789999954
No 132
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.69 E-value=2.7e-08 Score=83.82 Aligned_cols=55 Identities=31% Similarity=0.445 Sum_probs=39.9
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccc--cCCCCceeeEEE--EEe--CCcEEEEecCCcc
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPA--APRPGVTRVLKW--VRF--GKDLEFLDSPGII 273 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v--~~~pgtT~~~~~--~~~--~~~~~liDTPGi~ 273 (323)
.|+++|.+|||||||+|+|.+...... ...+++|.+... +.+ +..+.++||||..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~ 62 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHE 62 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChH
Confidence 589999999999999999997532222 234678877543 222 3468899999973
No 133
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=2.7e-08 Score=95.24 Aligned_cols=58 Identities=38% Similarity=0.497 Sum_probs=46.4
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEE--EEe-------------------CCcEEEEecCCccCC
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-------------------GKDLEFLDSPGIIPM 275 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-------------------~~~~~liDTPGi~~~ 275 (323)
.++++|||.||||||||+|+|++.. ..++++|+||.+... +++ ...+.++|.+|+++.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 3679999999999999999999877 789999999998421 111 123779999999853
No 134
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.65 E-value=1.3e-07 Score=97.14 Aligned_cols=130 Identities=18% Similarity=0.077 Sum_probs=91.4
Q ss_pred CCcchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--C
Q 020668 71 NGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--G 146 (323)
Q Consensus 71 ~~~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~ 146 (323)
.+.|-...|++.++++......+...-.+ +-++||| ..+..++...++.+|.+++|+|+..+.......+...+ .
T Consensus 37 ~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh-~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~ 115 (594)
T TIGR01394 37 RVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGH-ADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALEL 115 (594)
T ss_pred ecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCH-HHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHC
Confidence 36777788999999988876555444333 7789999 66888899999999999999999876543333333333 2
Q ss_pred CCCeEEEEeccCCccHH--h-HHHHHHHHHhh-------CceEEEecCcCCC----------cchhhhHHHHHhh
Q 020668 147 NRKRILVLNREDMISMA--D-RNAWATYFAKQ-------GTKVIFSNGQLGM----------GTMKLSRLAKALA 201 (323)
Q Consensus 147 ~k~~iiVlNK~DLl~~~--~-~~~~~~~~~~~-------g~~vi~iSa~~g~----------gi~~L~~~l~~l~ 201 (323)
+.|+++|+||+|+.... + .++..+.+.+. .++++++||++|. |+..|++.+.+..
T Consensus 116 ~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 116 GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 67999999999986432 2 23334444322 3568999999996 6767766655544
No 135
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.65 E-value=2.3e-07 Score=78.66 Aligned_cols=101 Identities=18% Similarity=0.095 Sum_probs=67.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCeEEEEeccCCccHH--hHHHHHHHHH--
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMA--DRNAWATYFA-- 173 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~iiVlNK~DLl~~~--~~~~~~~~~~-- 173 (323)
+-++||| ..+.......+..+|++++|+|+..+..........++ .++|+++|+||+|+.... ........+.
T Consensus 54 iiDtpG~-~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~ 132 (168)
T cd01887 54 FIDTPGH-EAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQ 132 (168)
T ss_pred EEeCCCc-HHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHHHHhhcc
Confidence 5678998 34444445567899999999999876533222223333 378999999999987532 1111111111
Q ss_pred ---h--hCceEEEecCcCCCcchhhhHHHHHhh
Q 020668 174 ---K--QGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 174 ---~--~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
. ....++++|+++|.|+.+|.+.+.++.
T Consensus 133 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 133 GEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred ccccccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence 1 125689999999999999988876654
No 136
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.64 E-value=3.2e-08 Score=94.30 Aligned_cols=54 Identities=30% Similarity=0.365 Sum_probs=42.9
Q ss_pred eeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEE--EEe-------------------------CCcEEEEecCCc
Q 020668 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-------------------------GKDLEFLDSPGI 272 (323)
Q Consensus 220 v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-------------------------~~~~~liDTPGi 272 (323)
|++||.||||||||+|+|.+.. ..++++|+||++... .+. .-.+.++||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~-~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD-VEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCC-CcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 5799999999999999999876 488999999987432 111 124789999999
Q ss_pred cC
Q 020668 273 IP 274 (323)
Q Consensus 273 ~~ 274 (323)
..
T Consensus 80 v~ 81 (318)
T cd01899 80 VP 81 (318)
T ss_pred CC
Confidence 74
No 137
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.64 E-value=3.3e-07 Score=77.41 Aligned_cols=87 Identities=16% Similarity=0.229 Sum_probs=64.2
Q ss_pred HHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCeEEEEeccCCccH--HhHHHHHHHHHh-h----CceEEEecC
Q 020668 114 LKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISM--ADRNAWATYFAK-Q----GTKVIFSNG 184 (323)
Q Consensus 114 l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~iiVlNK~DLl~~--~~~~~~~~~~~~-~----g~~vi~iSa 184 (323)
....+..+|++++|+|+..+.+.....+...+ .++|+++++||+|+.+. .....+.+.+.+ + +..++++|+
T Consensus 78 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 157 (174)
T cd01895 78 TLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISA 157 (174)
T ss_pred HHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEec
Confidence 34556899999999999988776665555554 37899999999999876 334444444433 2 257899999
Q ss_pred cCCCcchhhhHHHHHh
Q 020668 185 QLGMGTMKLSRLAKAL 200 (323)
Q Consensus 185 ~~g~gi~~L~~~l~~l 200 (323)
+++.|++++.+.+.++
T Consensus 158 ~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 158 LTGQGVDKLFDAIDEV 173 (174)
T ss_pred cCCCCHHHHHHHHHHh
Confidence 9999999988776543
No 138
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.63 E-value=1.7e-07 Score=78.00 Aligned_cols=84 Identities=20% Similarity=0.254 Sum_probs=65.4
Q ss_pred HHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCeEEEEeccCCccHHhHHHHHHHHHhhCceEEEecCcCCCcch
Q 020668 112 KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTM 191 (323)
Q Consensus 112 ~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~iiVlNK~DLl~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~ 191 (323)
+.....+.++|++++|+|+..+.+..+..+.....++|+++|+||+|+.+.... .....+..++.+|++++.|+.
T Consensus 72 ~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~vi~v~nK~D~~~~~~~-----~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 72 ERAREAIEEADLVLFVIDASRGLDEEDLEILELPADKPIIVVLNKSDLLPDSEL-----LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHhhcCCCEEEEEEchhcCCcccc-----ccccCCCceEEEECCCCCCHH
Confidence 345566789999999999998877777666665568999999999999876543 222334679999999999999
Q ss_pred hhhHHHHHh
Q 020668 192 KLSRLAKAL 200 (323)
Q Consensus 192 ~L~~~l~~l 200 (323)
+|.+.+...
T Consensus 147 ~l~~~l~~~ 155 (157)
T cd04164 147 ELKEALLEL 155 (157)
T ss_pred HHHHHHHHh
Confidence 988776543
No 139
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.62 E-value=7.5e-08 Score=87.37 Aligned_cols=60 Identities=20% Similarity=0.184 Sum_probs=45.1
Q ss_pred eEeeeecCCCCChhhHHHhhhcC-cccccc-CCCCceeeEEEE-E-e----CCcEEEEecCCccCCCC
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKR-RMCPAA-PRPGVTRVLKWV-R-F----GKDLEFLDSPGIIPMRI 277 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~-~~~~v~-~~pgtT~~~~~~-~-~----~~~~~liDTPGi~~~~~ 277 (323)
.-|+++|.+++|||||+|.|++. ..+.++ ..+.||+++... . . +..+.++||||+.....
T Consensus 8 ~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~ 75 (224)
T cd01851 8 AVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRER 75 (224)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCcccc
Confidence 35899999999999999999987 245544 447788885432 1 1 35699999999986544
No 140
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.62 E-value=1.4e-07 Score=80.05 Aligned_cols=97 Identities=11% Similarity=0.060 Sum_probs=64.1
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----CCCCeEEEEeccCCccHHhHHHHHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l-----~~k~~iiVlNK~DLl~~~~~~~~~~~~ 172 (323)
+-++||| ..+.......+..+|++++|+|+..+.+.. ...+..++ .+.|+++|+||+|+.+.....+..+.+
T Consensus 54 l~Dt~G~-~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~ 132 (167)
T cd04160 54 FWDLGGQ-ESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVF 132 (167)
T ss_pred EEECCCC-hhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHh
Confidence 4567998 445555667789999999999987643211 11222222 267999999999987653222222222
Q ss_pred Hh-------hCceEEEecCcCCCcchhhhHHH
Q 020668 173 AK-------QGTKVIFSNGQLGMGTMKLSRLA 197 (323)
Q Consensus 173 ~~-------~g~~vi~iSa~~g~gi~~L~~~l 197 (323)
.. .+.+++.+||++|.|++++.+.|
T Consensus 133 ~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l 164 (167)
T cd04160 133 QDKAEEIGRRDCLVLPVSALEGTGVREGIEWL 164 (167)
T ss_pred ccccccccCCceEEEEeeCCCCcCHHHHHHHH
Confidence 21 12478999999999998887665
No 141
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.62 E-value=1.2e-07 Score=90.82 Aligned_cols=101 Identities=19% Similarity=0.232 Sum_probs=70.3
Q ss_pred cccccchHH------HHHHHHHHHHhhcCeEEEEEeCCCCCCC-----Cc---HHHHHH---hCCCCeEEEEeccCCccH
Q 020668 100 VQWYPGHIA------KTEKELKDQLKLMDVVIEVRDARIPLST-----TH---PLMDQW---LGNRKRILVLNREDMISM 162 (323)
Q Consensus 100 i~~~PGh~~------k~~~~l~~~i~~aDlIl~VvDar~~~~~-----~~---~~i~~~---l~~k~~iiVlNK~DLl~~ 162 (323)
+.+.||... ....++.+.++++|++|+|+|+...... .. .++..+ +.++|+++|+||+|+.+.
T Consensus 209 i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~ 288 (329)
T TIGR02729 209 IADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE 288 (329)
T ss_pred EEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh
Confidence 677898742 2445566778999999999998754111 11 111122 236899999999999877
Q ss_pred HhHHHHHHHHHh-hCceEEEecCcCCCcchhhhHHHHHh
Q 020668 163 ADRNAWATYFAK-QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 163 ~~~~~~~~~~~~-~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
....++.+.+.+ .+..++++||+++.|+++|.+.+.++
T Consensus 289 ~~~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~ 327 (329)
T TIGR02729 289 EELAELLKELKKALGKPVFPISALTGEGLDELLYALAEL 327 (329)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHH
Confidence 655555555543 45679999999999999988876543
No 142
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.61 E-value=4.5e-07 Score=75.69 Aligned_cols=88 Identities=23% Similarity=0.229 Sum_probs=68.6
Q ss_pred HHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCeEEEEeccCCc-cHHhHHHHHHHHHhhC--ceEEEecCcC
Q 020668 112 KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI-SMADRNAWATYFAKQG--TKVIFSNGQL 186 (323)
Q Consensus 112 ~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~iiVlNK~DLl-~~~~~~~~~~~~~~~g--~~vi~iSa~~ 186 (323)
+.....+..+|++++|+|+..+.......+.+.+. +.|+++|+||+|+. ...+..++.+.+.... .+++.+|+++
T Consensus 74 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 153 (168)
T cd04163 74 KAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALK 153 (168)
T ss_pred HHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEecc
Confidence 34456689999999999999886666666666555 48999999999998 4555666666666543 5789999999
Q ss_pred CCcchhhhHHHHH
Q 020668 187 GMGTMKLSRLAKA 199 (323)
Q Consensus 187 g~gi~~L~~~l~~ 199 (323)
+.|++++.+.+.+
T Consensus 154 ~~~~~~l~~~l~~ 166 (168)
T cd04163 154 GENVDELLEEIVK 166 (168)
T ss_pred CCChHHHHHHHHh
Confidence 9999998887654
No 143
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.61 E-value=1.2e-07 Score=80.73 Aligned_cols=88 Identities=18% Similarity=0.184 Sum_probs=60.8
Q ss_pred HHHHHHHhhcCeEEEEEeCCCCC-CCCc-HHHHHHh-------CCCCeEEEEeccCCccHHhHHHHHHHHHhh--CceEE
Q 020668 112 KELKDQLKLMDVVIEVRDARIPL-STTH-PLMDQWL-------GNRKRILVLNREDMISMADRNAWATYFAKQ--GTKVI 180 (323)
Q Consensus 112 ~~l~~~i~~aDlIl~VvDar~~~-~~~~-~~i~~~l-------~~k~~iiVlNK~DLl~~~~~~~~~~~~~~~--g~~vi 180 (323)
+.+...+..+|++++|+|+.++. ...+ ..+.+.+ ..+|+++|+||+|+.+.....++...+... +..++
T Consensus 70 ~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 149 (170)
T cd01898 70 HRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVF 149 (170)
T ss_pred HHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEE
Confidence 44445667899999999998762 2111 1111111 258999999999998776655555544333 46789
Q ss_pred EecCcCCCcchhhhHHHHH
Q 020668 181 FSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 181 ~iSa~~g~gi~~L~~~l~~ 199 (323)
.+|++++.|++++.+.+.+
T Consensus 150 ~~Sa~~~~gi~~l~~~i~~ 168 (170)
T cd01898 150 PISALTGEGLDELLRKLAE 168 (170)
T ss_pred EEecCCCCCHHHHHHHHHh
Confidence 9999999999998877654
No 144
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.60 E-value=2.9e-08 Score=92.77 Aligned_cols=56 Identities=34% Similarity=0.476 Sum_probs=46.3
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEE--EEe--CCcEEEEecCCccCC
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF--GKDLEFLDSPGIIPM 275 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~--~~~~~liDTPGi~~~ 275 (323)
.|++||+||+|||||+|+|...+. +++++++||..... +.. ...+.+-|-|||+..
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~G 257 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEG 257 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCcccccc
Confidence 589999999999999999998765 99999999988532 222 345889999999853
No 145
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.58 E-value=9.3e-08 Score=84.75 Aligned_cols=59 Identities=22% Similarity=0.160 Sum_probs=40.4
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCcccccc-C---CCCceeeEEEEEe--CCcEEEEecCCccCC
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAA-P---RPGVTRVLKWVRF--GKDLEFLDSPGIIPM 275 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~-~---~pgtT~~~~~~~~--~~~~~liDTPGi~~~ 275 (323)
+++|+++|.+|||||||+|+|++......+ . ...+|+....+.. ..++.++||||+...
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~ 65 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGST 65 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcc
Confidence 367999999999999999999985332211 1 1224555444432 247899999999743
No 146
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.58 E-value=4.6e-08 Score=92.36 Aligned_cols=56 Identities=36% Similarity=0.510 Sum_probs=46.5
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEE--EEEe--CCcEEEEecCCccCC
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF--GKDLEFLDSPGIIPM 275 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~--~~~~~liDTPGi~~~ 275 (323)
.|++||+||+|||||||++...+ .+++++|+||.... .++. ++.+.+-|-||++..
T Consensus 161 DVGLVG~PNaGKSTlls~vS~Ak-PKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEG 220 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAK-PKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEG 220 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcC-CcccCCccccccCcccEEEecCCCcEEEecCcccccc
Confidence 48999999999999999999765 59999999999843 3443 456999999999853
No 147
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.58 E-value=5.7e-08 Score=91.55 Aligned_cols=60 Identities=35% Similarity=0.400 Sum_probs=47.7
Q ss_pred ccceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe--------------------CCcEEEEecCCccC
Q 020668 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF--------------------GKDLEFLDSPGIIP 274 (323)
Q Consensus 215 ~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~--------------------~~~~~liDTPGi~~ 274 (323)
+..++++|||.|||||||++|+|.+... .++++|+||.+...-+. ...+.++|.+|+.+
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a-~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKA-GAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCC-CccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 3457899999999999999999998776 49999999998532111 12488999999985
Q ss_pred C
Q 020668 275 M 275 (323)
Q Consensus 275 ~ 275 (323)
.
T Consensus 97 G 97 (391)
T KOG1491|consen 97 G 97 (391)
T ss_pred C
Confidence 3
No 148
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.57 E-value=3.4e-08 Score=88.25 Aligned_cols=55 Identities=29% Similarity=0.347 Sum_probs=40.5
Q ss_pred EeeeecCCCCChhhHHHhhhcCcccccc------------------------------CCCCceeeEEEEEe---CCcEE
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAA------------------------------PRPGVTRVLKWVRF---GKDLE 265 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~------------------------------~~pgtT~~~~~~~~---~~~~~ 265 (323)
+|+++|.+|+|||||+|+|+......++ ...|+|++.....+ +..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 4899999999999999999864433221 12688988644333 55789
Q ss_pred EEecCCcc
Q 020668 266 FLDSPGII 273 (323)
Q Consensus 266 liDTPGi~ 273 (323)
|+||||..
T Consensus 81 liDTpG~~ 88 (208)
T cd04166 81 IADTPGHE 88 (208)
T ss_pred EEECCcHH
Confidence 99999973
No 149
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.57 E-value=3.2e-07 Score=78.10 Aligned_cols=97 Identities=14% Similarity=0.054 Sum_probs=66.0
Q ss_pred ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh----CCCCeEEEEeccCCccHHhHHHHHHHHHhh
Q 020668 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL----GNRKRILVLNREDMISMADRNAWATYFAKQ 175 (323)
Q Consensus 101 ~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~-~i~~~l----~~k~~iiVlNK~DLl~~~~~~~~~~~~~~~ 175 (323)
-++||+ .++.......++.+|++|+|+|..++.+..+. .+...+ .+.|+++|+||+|+.+... .+..++..+.
T Consensus 54 ~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~ 131 (161)
T cd04124 54 WDTAGQ-ERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSVT-QKKFNFAEKH 131 (161)
T ss_pred EeCCCc-hhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhHH-HHHHHHHHHc
Confidence 356887 55666666778999999999998766543221 121212 2689999999999854322 2222333344
Q ss_pred CceEEEecCcCCCcchhhhHHHHH
Q 020668 176 GTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 176 g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
+.+++.+||++|.|++++.+.+.+
T Consensus 132 ~~~~~~~Sa~~~~gv~~l~~~l~~ 155 (161)
T cd04124 132 NLPLYYVSAADGTNVVKLFQDAIK 155 (161)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHH
Confidence 577899999999999998777654
No 150
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.57 E-value=2.4e-07 Score=89.02 Aligned_cols=103 Identities=20% Similarity=0.263 Sum_probs=69.5
Q ss_pred cccccchHH------HHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh-------CCCCeEEEEeccCCccHHhH
Q 020668 100 VQWYPGHIA------KTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL-------GNRKRILVLNREDMISMADR 165 (323)
Q Consensus 100 i~~~PGh~~------k~~~~l~~~i~~aDlIl~VvDar~~~~~~~-~~i~~~l-------~~k~~iiVlNK~DLl~~~~~ 165 (323)
+.+.||... ....++.+.++++|++|+|+|+....+..+ ..+...+ .++|+++|+||+|+.+..+.
T Consensus 210 i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~ 289 (335)
T PRK12299 210 IADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEE 289 (335)
T ss_pred EEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhH
Confidence 677888642 244566678899999999999975432111 1121212 36899999999999865432
Q ss_pred H-HHHH-HHHhhCceEEEecCcCCCcchhhhHHHHHhhh
Q 020668 166 N-AWAT-YFAKQGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (323)
Q Consensus 166 ~-~~~~-~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (323)
. +..+ ++...+..++++||+++.|+++|.+.+.++..
T Consensus 290 ~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~ 328 (335)
T PRK12299 290 REKRAALELAALGGPVFLISAVTGEGLDELLRALWELLE 328 (335)
T ss_pred HHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 2 2222 23344567999999999999999888766543
No 151
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.56 E-value=4.5e-07 Score=80.21 Aligned_cols=82 Identities=21% Similarity=0.297 Sum_probs=58.2
Q ss_pred HHHHhhcCeEEEEEeCCCCCCCCcH-HHHHH---hC--CCCeEEEEeccCCccHHhHHHHHHHHHhhCceEEEecCcCCC
Q 020668 115 KDQLKLMDVVIEVRDARIPLSTTHP-LMDQW---LG--NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGM 188 (323)
Q Consensus 115 ~~~i~~aDlIl~VvDar~~~~~~~~-~i~~~---l~--~k~~iiVlNK~DLl~~~~~~~~~~~~~~~g~~vi~iSa~~g~ 188 (323)
...+..+|++++|+|++++....+. .+.++ +. ++|+++|+||+|+.+..... ..+...+..++++||++|.
T Consensus 115 ~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~~~~~~~~~~~Sa~~~~ 191 (204)
T cd01878 115 LEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE---ERLEAGRPDAVFISAKTGE 191 (204)
T ss_pred HHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH---HHhhcCCCceEEEEcCCCC
Confidence 3446789999999999887654432 12222 22 57999999999998765433 2233344678999999999
Q ss_pred cchhhhHHHHH
Q 020668 189 GTMKLSRLAKA 199 (323)
Q Consensus 189 gi~~L~~~l~~ 199 (323)
|++++.+.|..
T Consensus 192 gi~~l~~~L~~ 202 (204)
T cd01878 192 GLDELLEAIEE 202 (204)
T ss_pred CHHHHHHHHHh
Confidence 99988776543
No 152
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.56 E-value=6.2e-07 Score=88.78 Aligned_cols=89 Identities=17% Similarity=0.204 Sum_probs=68.5
Q ss_pred HHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCeEEEEeccCCccHHhHHHHHHHHHhh-----CceEEEecCcC
Q 020668 114 LKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQ-----GTKVIFSNGQL 186 (323)
Q Consensus 114 l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~iiVlNK~DLl~~~~~~~~~~~~~~~-----g~~vi~iSa~~ 186 (323)
....+..+|++|+|+|+..+.+..+..+..++. ++|+++|+||+|+.+.....+..+.+... ..+++++||++
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~ 328 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALT 328 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCC
Confidence 345789999999999999988877777666654 78999999999998665544444444321 25789999999
Q ss_pred CCcchhhhHHHHHhhh
Q 020668 187 GMGTMKLSRLAKALAS 202 (323)
Q Consensus 187 g~gi~~L~~~l~~l~~ 202 (323)
|.|+.++.+.+.+...
T Consensus 329 ~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 329 GQGVDKLLEAIDEAYE 344 (435)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999887766543
No 153
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.55 E-value=4.3e-07 Score=91.17 Aligned_cols=104 Identities=20% Similarity=0.239 Sum_probs=70.6
Q ss_pred cccccchHH------HHHHHHHHHHhhcCeEEEEEeCCCCC------CCCc---HHHHHH------------hCCCCeEE
Q 020668 100 VQWYPGHIA------KTEKELKDQLKLMDVVIEVRDARIPL------STTH---PLMDQW------------LGNRKRIL 152 (323)
Q Consensus 100 i~~~PGh~~------k~~~~l~~~i~~aDlIl~VvDar~~~------~~~~---~~i~~~------------l~~k~~ii 152 (323)
+.+.||... ....++.+.++++|+||+|+|+.... ...+ .++..+ +.++|+++
T Consensus 210 laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IV 289 (500)
T PRK12296 210 VADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLV 289 (500)
T ss_pred EEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEE
Confidence 678898531 12244566789999999999996432 1111 123322 23689999
Q ss_pred EEeccCCccHHhHHHH-HHHHHhhCceEEEecCcCCCcchhhhHHHHHhhhh
Q 020668 153 VLNREDMISMADRNAW-ATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASD 203 (323)
Q Consensus 153 VlNK~DLl~~~~~~~~-~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~~~ 203 (323)
|+||+|+.+..+..++ .+.+.+.+..++++||+++.|+++|...+.++...
T Consensus 290 VlNKiDL~da~el~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 290 VLNKIDVPDARELAEFVRPELEARGWPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred EEECccchhhHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 9999999765543333 23455556789999999999999998877666543
No 154
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.55 E-value=2e-07 Score=80.26 Aligned_cols=97 Identities=11% Similarity=0.110 Sum_probs=64.6
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----CCCCeEEEEeccCCccHHhHHHHHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l-----~~k~~iiVlNK~DLl~~~~~~~~~~~~ 172 (323)
+-++||+ .++.......+..+|++++|+|+.++.+.. ...+..++ .+.|+++|+||+|+.......+..+.+
T Consensus 62 l~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~ 140 (173)
T cd04154 62 IWDVGGQ-KTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREAL 140 (173)
T ss_pred EEECCCC-HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHh
Confidence 4567888 344445556789999999999987653211 12233332 367999999999997543223332333
Q ss_pred H-----hhCceEEEecCcCCCcchhhhHHH
Q 020668 173 A-----KQGTKVIFSNGQLGMGTMKLSRLA 197 (323)
Q Consensus 173 ~-----~~g~~vi~iSa~~g~gi~~L~~~l 197 (323)
. ..+..++.+||++|.|++++.+.+
T Consensus 141 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 170 (173)
T cd04154 141 ELDKISSHHWRIQPCSAVTGEGLLQGIDWL 170 (173)
T ss_pred CccccCCCceEEEeccCCCCcCHHHHHHHH
Confidence 1 223579999999999999887664
No 155
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.54 E-value=1e-07 Score=80.79 Aligned_cols=54 Identities=22% Similarity=0.423 Sum_probs=40.4
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe------CCcEEEEecCCcc
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF------GKDLEFLDSPGII 273 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~------~~~~~liDTPGi~ 273 (323)
.|+++|.+|+|||||+|+|.+... .....+++|.+...... +..+.++||||..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~ 61 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNV-AAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHE 61 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccc-ccccCCCeEEeeccEEEecccCCcceEEEEeCCCcH
Confidence 489999999999999999997643 34455678877542222 3468899999973
No 156
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.54 E-value=2.6e-07 Score=77.38 Aligned_cols=80 Identities=18% Similarity=0.103 Sum_probs=56.7
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCeEEEEeccCCccHHhHHHHHHHH-HhhCceEEEecCcCCCcchhhhH
Q 020668 119 KLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYF-AKQGTKVIFSNGQLGMGTMKLSR 195 (323)
Q Consensus 119 ~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~iiVlNK~DLl~~~~~~~~~~~~-~~~g~~vi~iSa~~g~gi~~L~~ 195 (323)
..+|++++|+|+..+.. ...+...+ .++|+++|+||+|+.+......+.+.+ ..++..++++|+.+|.|+.++.+
T Consensus 73 ~~~d~vi~v~d~~~~~~--~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~ 150 (158)
T cd01879 73 EKPDLIVNVVDATNLER--NLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKD 150 (158)
T ss_pred CCCcEEEEEeeCCcchh--HHHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHH
Confidence 58999999999986432 22222222 378999999999998654333333333 33567899999999999999887
Q ss_pred HHHHh
Q 020668 196 LAKAL 200 (323)
Q Consensus 196 ~l~~l 200 (323)
.+..+
T Consensus 151 ~l~~~ 155 (158)
T cd01879 151 AIAEL 155 (158)
T ss_pred HHHHH
Confidence 76554
No 157
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.53 E-value=2.9e-07 Score=77.53 Aligned_cols=97 Identities=14% Similarity=0.070 Sum_probs=63.5
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-------CCCCeEEEEeccCCccHHhHHHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-------GNRKRILVLNREDMISMADRNAWAT 170 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l-------~~k~~iiVlNK~DLl~~~~~~~~~~ 170 (323)
+-++||+ .++.......++.+|.+|+|+|+.++.+.. ...+..++ .+.|+++|+||+|+.+.....+..+
T Consensus 49 l~Dt~G~-~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~ 127 (162)
T cd04157 49 AFDMSGQ-GKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQ 127 (162)
T ss_pred EEECCCC-HhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHH
Confidence 5567888 445555566789999999999998754321 11222221 2579999999999976432222222
Q ss_pred HHH--h---hCceEEEecCcCCCcchhhhHHH
Q 020668 171 YFA--K---QGTKVIFSNGQLGMGTMKLSRLA 197 (323)
Q Consensus 171 ~~~--~---~g~~vi~iSa~~g~gi~~L~~~l 197 (323)
.+. . ....++.+||++|.|++++.+.|
T Consensus 128 ~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l 159 (162)
T cd04157 128 LLGLENIKDKPWHIFASNALTGEGLDEGVQWL 159 (162)
T ss_pred HhCCccccCceEEEEEeeCCCCCchHHHHHHH
Confidence 221 1 12357889999999999987765
No 158
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.53 E-value=2.4e-07 Score=78.12 Aligned_cols=97 Identities=18% Similarity=0.098 Sum_probs=63.0
Q ss_pred ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC--CcHHHHHHh-----CCCCeEEEEeccCCccHHhHHHHHHHHH
Q 020668 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFA 173 (323)
Q Consensus 101 ~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~--~~~~i~~~l-----~~k~~iiVlNK~DLl~~~~~~~~~~~~~ 173 (323)
-++||+ .++.......+..+|++++|+|+.++.+. ....+.+.+ .+.|+++|+||+|+.......+....+.
T Consensus 49 ~D~~G~-~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~ 127 (160)
T cd04156 49 WDVGGQ-EKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFK 127 (160)
T ss_pred EECCCC-HhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcC
Confidence 346776 44555555678999999999999876421 122333333 3679999999999864322222222221
Q ss_pred --h----hCceEEEecCcCCCcchhhhHHHH
Q 020668 174 --K----QGTKVIFSNGQLGMGTMKLSRLAK 198 (323)
Q Consensus 174 --~----~g~~vi~iSa~~g~gi~~L~~~l~ 198 (323)
. .+..++.+||++|.|++++.+.|.
T Consensus 128 ~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~ 158 (160)
T cd04156 128 LKKYCSDRDWYVQPCSAVTGEGLAEAFRKLA 158 (160)
T ss_pred CcccCCCCcEEEEecccccCCChHHHHHHHh
Confidence 1 124588899999999999877654
No 159
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.52 E-value=3.4e-07 Score=89.84 Aligned_cols=91 Identities=24% Similarity=0.307 Sum_probs=72.9
Q ss_pred HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-CCCCeEEEEeccCCccHHhHHHHHHHHHhhCceEEEecCcCCC
Q 020668 110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGM 188 (323)
Q Consensus 110 ~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l-~~k~~iiVlNK~DLl~~~~~~~~~~~~~~~g~~vi~iSa~~g~ 188 (323)
..++.++.+++||+|++|+|+..+.+..+..+...+ .++|+++|+||+||.+....... + + ..+..++.+|+++|.
T Consensus 286 GIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~~~~~i~v~NK~DL~~~~~~~~~-~-~-~~~~~~i~iSa~t~~ 362 (454)
T COG0486 286 GIERAKKAIEEADLVLFVLDASQPLDKEDLALIELLPKKKPIIVVLNKADLVSKIELESE-K-L-ANGDAIISISAKTGE 362 (454)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhcccCCCEEEEEechhcccccccchh-h-c-cCCCceEEEEecCcc
Confidence 578888999999999999999999888888887744 47999999999999987653322 1 1 123568999999999
Q ss_pred cchhhhHHHHHhhhh
Q 020668 189 GTMKLSRLAKALASD 203 (323)
Q Consensus 189 gi~~L~~~l~~l~~~ 203 (323)
|++.|++.|.++...
T Consensus 363 Gl~~L~~~i~~~~~~ 377 (454)
T COG0486 363 GLDALREAIKQLFGK 377 (454)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999988876543
No 160
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.52 E-value=2.8e-07 Score=77.95 Aligned_cols=98 Identities=12% Similarity=0.035 Sum_probs=63.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC--CcHHHHHHh-----CCCCeEEEEeccCCccHHhHHHHHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~--~~~~i~~~l-----~~k~~iiVlNK~DLl~~~~~~~~~~~~ 172 (323)
+-++||+ ..+.......++.+|++|+|+|+..+.+. ....+..++ .++|+++|+||+|+.+.....+..+.+
T Consensus 47 i~Dt~G~-~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~ 125 (158)
T cd04151 47 VWDLGGQ-TSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKL 125 (158)
T ss_pred EEECCCC-HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHh
Confidence 5567888 34444445668999999999998764321 122233322 268999999999997543222222222
Q ss_pred H-----hhCceEEEecCcCCCcchhhhHHHH
Q 020668 173 A-----KQGTKVIFSNGQLGMGTMKLSRLAK 198 (323)
Q Consensus 173 ~-----~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (323)
. ..+.+++++||++|.|++++.+.+.
T Consensus 126 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 156 (158)
T cd04151 126 GLSELKDRTWSIFKTSAIKGEGLDEGMDWLV 156 (158)
T ss_pred CccccCCCcEEEEEeeccCCCCHHHHHHHHh
Confidence 1 1124699999999999999877653
No 161
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.51 E-value=1.6e-07 Score=79.19 Aligned_cols=53 Identities=19% Similarity=0.299 Sum_probs=39.5
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEE--EEeCC---cEEEEecCCc
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFGK---DLEFLDSPGI 272 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~~---~~~liDTPGi 272 (323)
+|+++|.+|||||||+|+|++.+. ..+..|++|.+... +..+. .+.++||||-
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~ 59 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTF-DNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQ 59 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CccCCCceeeeEEEEEEEECCEEEEEEEEECCCc
Confidence 689999999999999999997654 34556777766432 22322 4789999995
No 162
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.51 E-value=8.2e-07 Score=85.87 Aligned_cols=85 Identities=18% Similarity=0.231 Sum_probs=59.5
Q ss_pred HHHHHHHHhhcCeEEEEEeCCCCCCCCcH----HHHHHhC--CCCeEEEEeccCCccHHhHHHHHHHHHhhCceEEEecC
Q 020668 111 EKELKDQLKLMDVVIEVRDARIPLSTTHP----LMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNG 184 (323)
Q Consensus 111 ~~~l~~~i~~aDlIl~VvDar~~~~~~~~----~i~~~l~--~k~~iiVlNK~DLl~~~~~~~~~~~~~~~g~~vi~iSa 184 (323)
.+.+.+.+.++|++|+|+|+.++....+. .+...+. ++|+++|+||+|+.+..+... .......++++||
T Consensus 259 f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~~----~~~~~~~~i~iSA 334 (351)
T TIGR03156 259 FRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIER----LEEGYPEAVFVSA 334 (351)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHHH----HHhCCCCEEEEEc
Confidence 44455678999999999999887654332 2222233 689999999999986543321 2122245899999
Q ss_pred cCCCcchhhhHHHHH
Q 020668 185 QLGMGTMKLSRLAKA 199 (323)
Q Consensus 185 ~~g~gi~~L~~~l~~ 199 (323)
++|.|+++|.+.+.+
T Consensus 335 ktg~GI~eL~~~I~~ 349 (351)
T TIGR03156 335 KTGEGLDLLLEAIAE 349 (351)
T ss_pred cCCCCHHHHHHHHHh
Confidence 999999998887654
No 163
>PRK13768 GTPase; Provisional
Probab=98.50 E-value=6.1e-07 Score=82.91 Aligned_cols=109 Identities=23% Similarity=0.286 Sum_probs=74.1
Q ss_pred ccCcceeeeeccccccccccchHHH-----HHHHHHHHHhh--cCeEEEEEeCCCCCCCCcHHHHHHh-------CCCCe
Q 020668 85 DLDADLYYWTKSLRPVQWYPGHIAK-----TEKELKDQLKL--MDVVIEVRDARIPLSTTHPLMDQWL-------GNRKR 150 (323)
Q Consensus 85 ~~~~~~~~~~~~l~~i~~~PGh~~k-----~~~~l~~~i~~--aDlIl~VvDar~~~~~~~~~i~~~l-------~~k~~ 150 (323)
..+.+|+.|. +||.+.- ..+.+.+.+.. .+++++|+|++.+....+.....++ .++|+
T Consensus 94 ~~~~~~~~~d--------~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~ 165 (253)
T PRK13768 94 SLDADYVLVD--------TPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQ 165 (253)
T ss_pred hcCCCEEEEe--------CCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCE
Confidence 3445676666 5665432 23444455554 8999999999887665554444332 37899
Q ss_pred EEEEeccCCccHHhHHHHHHHH----------------------------HhhC--ceEEEecCcCCCcchhhhHHHHHh
Q 020668 151 ILVLNREDMISMADRNAWATYF----------------------------AKQG--TKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 151 iiVlNK~DLl~~~~~~~~~~~~----------------------------~~~g--~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
++|+||+|+++..+.+...+++ ++.+ ++++++|++++.|+++|.+.+.+.
T Consensus 166 i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~ 245 (253)
T PRK13768 166 IPVLNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEV 245 (253)
T ss_pred EEEEEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHH
Confidence 9999999999876543332222 2223 578999999999999999888765
Q ss_pred h
Q 020668 201 A 201 (323)
Q Consensus 201 ~ 201 (323)
.
T Consensus 246 l 246 (253)
T PRK13768 246 F 246 (253)
T ss_pred c
Confidence 4
No 164
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.49 E-value=6.3e-07 Score=76.23 Aligned_cols=100 Identities=10% Similarity=-0.017 Sum_probs=66.6
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhC-----CCCeEEEEeccCCccHH--hHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG-----NRKRILVLNREDMISMA--DRNA 167 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l~-----~k~~iiVlNK~DLl~~~--~~~~ 167 (323)
+-++||+ ..+.......++.+|.+|+++|+.++.+..+. .+...+. ++|+++|+||+|+.... ..+.
T Consensus 53 ~~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~ 131 (172)
T cd01862 53 IWDTAGQ-ERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKK 131 (172)
T ss_pred EEeCCCh-HHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHH
Confidence 3467887 34555555678999999999999876532211 1122222 57999999999998322 1222
Q ss_pred HHHHHHhhC-ceEEEecCcCCCcchhhhHHHHHh
Q 020668 168 WATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 168 ~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
...+.+..+ ..++.+|+++|.|++++.+.+.+.
T Consensus 132 ~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~ 165 (172)
T cd01862 132 AQQWCQSNGNIPYFETSAKEAINVEQAFETIARK 165 (172)
T ss_pred HHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 223344444 679999999999999988776654
No 165
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.49 E-value=7.2e-07 Score=80.89 Aligned_cols=90 Identities=19% Similarity=0.170 Sum_probs=69.0
Q ss_pred CCCcchhhHhhhcccccCcce--eeeecc--------cc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC
Q 020668 70 SNGSIEAYEEECDWADLDADL--YYWTKS--------LR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT 137 (323)
Q Consensus 70 ~~~~~~~~~e~e~~~~~~~~~--~~~~~~--------l~--~i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~ 137 (323)
..|.|-...|++.++++.... +.|... .. .+-++||| .++..++...+..+|.+++|+|+..+....
T Consensus 35 ~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTPG~-~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~ 113 (222)
T cd01885 35 ARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSPGH-VDFSSEVTAALRLCDGALVVVDAVEGVCVQ 113 (222)
T ss_pred eeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCCCc-cccHHHHHHHHHhcCeeEEEEECCCCCCHH
Confidence 347888889999999988763 455522 12 25688999 568889999999999999999999887655
Q ss_pred cHHHHHHh--CCCCeEEEEeccCCc
Q 020668 138 HPLMDQWL--GNRKRILVLNREDMI 160 (323)
Q Consensus 138 ~~~i~~~l--~~k~~iiVlNK~DLl 160 (323)
...+.... .+.|+++|+||+|+.
T Consensus 114 t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 114 TETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred HHHHHHHHHHcCCCEEEEEECCCcc
Confidence 44444433 267999999999986
No 166
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.48 E-value=1.5e-06 Score=75.89 Aligned_cols=84 Identities=19% Similarity=0.235 Sum_probs=60.9
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCeEEEEeccCCccHHhHHHHH----HHHHhhCceEEEecCcCCCcchh
Q 020668 119 KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWA----TYFAKQGTKVIFSNGQLGMGTMK 192 (323)
Q Consensus 119 ~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~iiVlNK~DLl~~~~~~~~~----~~~~~~g~~vi~iSa~~g~gi~~ 192 (323)
+.++++++|+|+..+.+..+..+..++. +.|+++++||+|+.+..+..... +.+......++++|++++.|+++
T Consensus 105 ~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~ 184 (196)
T PRK00454 105 ENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDE 184 (196)
T ss_pred ccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHH
Confidence 3457899999998877665555555554 67899999999998765543332 22322246789999999999999
Q ss_pred hhHHHHHhhh
Q 020668 193 LSRLAKALAS 202 (323)
Q Consensus 193 L~~~l~~l~~ 202 (323)
+.+.+.++.+
T Consensus 185 l~~~i~~~~~ 194 (196)
T PRK00454 185 LRAAIAKWLA 194 (196)
T ss_pred HHHHHHHHhc
Confidence 9888876543
No 167
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.48 E-value=2.1e-07 Score=90.03 Aligned_cols=57 Identities=35% Similarity=0.398 Sum_probs=46.2
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEE--EEEe-C-----------------CcEEEEecCCccC
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-G-----------------KDLEFLDSPGIIP 274 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~-~-----------------~~~~liDTPGi~~ 274 (323)
+++++||+||||||||+|+|.+.+...++++|+||.+.. .+.. + ..+.++|.||++.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~ 79 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVG 79 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEecccccc
Confidence 679999999999999999999877547899999998843 2332 1 2478999999985
No 168
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.47 E-value=6.5e-07 Score=75.53 Aligned_cols=98 Identities=12% Similarity=-0.055 Sum_probs=65.6
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh--CCCCeEEEEeccCCccHHh--HHHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDMISMAD--RNAWAT 170 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l--~~k~~iiVlNK~DLl~~~~--~~~~~~ 170 (323)
+-+.||+ .++.......+..+|.+++|+|+.++.+.... .+.... .+.|+++|+||+|+.+... .....+
T Consensus 54 i~Dt~G~-~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~ 132 (164)
T cd04145 54 ILDTAGQ-EEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQE 132 (164)
T ss_pred EEECCCC-cchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHH
Confidence 3467887 45666666778999999999999765432111 111111 2569999999999865422 122223
Q ss_pred HHHhhCceEEEecCcCCCcchhhhHHHH
Q 020668 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (323)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (323)
..++.+..++.+||++|.|++++.+.+.
T Consensus 133 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 133 LARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred HHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 3344567889999999999999877654
No 169
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.46 E-value=5.3e-07 Score=88.34 Aligned_cols=104 Identities=18% Similarity=0.224 Sum_probs=70.7
Q ss_pred cccccchHHH------HHHHHHHHHhhcCeEEEEEeCCCCC--CC--CcHHHHHHh-------CCCCeEEEEeccCCccH
Q 020668 100 VQWYPGHIAK------TEKELKDQLKLMDVVIEVRDARIPL--ST--THPLMDQWL-------GNRKRILVLNREDMISM 162 (323)
Q Consensus 100 i~~~PGh~~k------~~~~l~~~i~~aDlIl~VvDar~~~--~~--~~~~i~~~l-------~~k~~iiVlNK~DLl~~ 162 (323)
+.+.||.... ...++.+.++++|++++|+|+.... .. ....+.+.+ .++|.++|+||+|+.+.
T Consensus 211 ~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~ 290 (390)
T PRK12298 211 VADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE 290 (390)
T ss_pred EEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh
Confidence 6788987531 3456667899999999999986221 11 011222222 25899999999999876
Q ss_pred HhHHHHHHHHHh-hC--ceEEEecCcCCCcchhhhHHHHHhhhh
Q 020668 163 ADRNAWATYFAK-QG--TKVIFSNGQLGMGTMKLSRLAKALASD 203 (323)
Q Consensus 163 ~~~~~~~~~~~~-~g--~~vi~iSa~~g~gi~~L~~~l~~l~~~ 203 (323)
.+..+..+.+.+ .+ ..++++||+++.|+++|.+.+.++.++
T Consensus 291 ~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 291 EEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 655444444433 33 368999999999999998887776544
No 170
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.46 E-value=2.3e-07 Score=76.87 Aligned_cols=56 Identities=23% Similarity=0.328 Sum_probs=38.2
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccc-cCCCCceeeEEEEEe---CCcEEEEecCCcc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v-~~~pgtT~~~~~~~~---~~~~~liDTPGi~ 273 (323)
++|+++|.+|+|||||+|+|.+...... .+..+.+.....+.. ...+.++||||..
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 60 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQE 60 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChH
Confidence 3689999999999999999997654333 223333333333333 2357799999974
No 171
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.46 E-value=1e-06 Score=76.57 Aligned_cols=72 Identities=19% Similarity=0.243 Sum_probs=53.2
Q ss_pred hcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCeEEEEeccCCccHHhH----HHHHHHHHhhC--ceEEEecCcCCCcch
Q 020668 120 LMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADR----NAWATYFAKQG--TKVIFSNGQLGMGTM 191 (323)
Q Consensus 120 ~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~iiVlNK~DLl~~~~~----~~~~~~~~~~g--~~vi~iSa~~g~gi~ 191 (323)
.+|.+++|+|++.+.+..+..+..++. ++|+++|+||+|+.+..+. .++.+.+...+ ..++++||++|+|++
T Consensus 100 ~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 100 NLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred hhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 468999999999887776666555554 6899999999999865433 23333444433 379999999999973
No 172
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.45 E-value=1.3e-06 Score=74.26 Aligned_cols=81 Identities=17% Similarity=0.149 Sum_probs=54.3
Q ss_pred hhcCeEEEEEeCCCCCCCC-cH--HHHHHh----CCCCeEEEEeccCCccHHhHHHHHHHHHhhCceEEEecCcCCCcch
Q 020668 119 KLMDVVIEVRDARIPLSTT-HP--LMDQWL----GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTM 191 (323)
Q Consensus 119 ~~aDlIl~VvDar~~~~~~-~~--~i~~~l----~~k~~iiVlNK~DLl~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~ 191 (323)
..+|++|+|+|+.+..+.. +. .+...+ .+.|+++|+||+|+.......+..++....+..++.+||++|.|++
T Consensus 78 ~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (168)
T cd01897 78 HLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVD 157 (168)
T ss_pred hccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHH
Confidence 3468999999998754321 11 222222 2689999999999987655443222222234678999999999999
Q ss_pred hhhHHHHH
Q 020668 192 KLSRLAKA 199 (323)
Q Consensus 192 ~L~~~l~~ 199 (323)
++.+.+.+
T Consensus 158 ~l~~~l~~ 165 (168)
T cd01897 158 EVKNKACE 165 (168)
T ss_pred HHHHHHHH
Confidence 98876543
No 173
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.45 E-value=8.5e-07 Score=74.76 Aligned_cols=96 Identities=13% Similarity=0.086 Sum_probs=66.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHH-------hCCCCeEEEEeccCCccHHh--HHHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW-------LGNRKRILVLNREDMISMAD--RNAWAT 170 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~-------l~~k~~iiVlNK~DLl~~~~--~~~~~~ 170 (323)
+-++||+ .++.......++.+|.+++|+|+.++.+.. .+..+ ..+.|+++|+||+|+.+... ..+...
T Consensus 55 i~D~~G~-~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~--~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~ 131 (162)
T cd04106 55 LWDTAGQ-EEFDAITKAYYRGAQACILVFSTTDRESFE--AIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEA 131 (162)
T ss_pred EeeCCch-HHHHHhHHHHhcCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHH
Confidence 3356887 556666667789999999999987654321 12222 23689999999999976432 122233
Q ss_pred HHHhhCceEEEecCcCCCcchhhhHHHH
Q 020668 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (323)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (323)
..+..+.+++.+|+++|.|++++.+.+.
T Consensus 132 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 132 LAKRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred HHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 3445677899999999999998877654
No 174
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.45 E-value=5.4e-07 Score=77.61 Aligned_cols=97 Identities=12% Similarity=-0.005 Sum_probs=62.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----CCCCeEEEEeccCCccH---HhHHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISM---ADRNAWA 169 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l-----~~k~~iiVlNK~DLl~~---~~~~~~~ 169 (323)
+-++||+ .++.......+..+|++|+|+|+.++.+.. ...+.+.+ .+.|+++|.||+|+... ++..++.
T Consensus 57 l~Dt~G~-~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~ 135 (168)
T cd04149 57 VWDVGGQ-DKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKL 135 (168)
T ss_pred EEECCCC-HHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHc
Confidence 3457888 455555556789999999999998753221 12232333 24799999999998643 2222222
Q ss_pred HH--HHhhCceEEEecCcCCCcchhhhHHH
Q 020668 170 TY--FAKQGTKVIFSNGQLGMGTMKLSRLA 197 (323)
Q Consensus 170 ~~--~~~~g~~vi~iSa~~g~gi~~L~~~l 197 (323)
+. +......++++||++|.|++++.+.|
T Consensus 136 ~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l 165 (168)
T cd04149 136 GLTRIRDRNWYVQPSCATSGDGLYEGLTWL 165 (168)
T ss_pred CCCccCCCcEEEEEeeCCCCCChHHHHHHH
Confidence 11 11112467899999999998877654
No 175
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.45 E-value=9.5e-07 Score=74.42 Aligned_cols=97 Identities=13% Similarity=0.096 Sum_probs=68.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--------CCCCeEEEEeccCCccHHh--HHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMISMAD--RNAWA 169 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--------~~k~~iiVlNK~DLl~~~~--~~~~~ 169 (323)
+-++||+ .++.......++.+|++++|+|+.++.+... +..|+ .+.|+++|.||+|+.+..+ .+...
T Consensus 53 l~D~~G~-~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~--~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~ 129 (164)
T smart00175 53 IWDTAGQ-ERFRSITSSYYRGAVGALLVYDITNRESFEN--LKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAE 129 (164)
T ss_pred EEECCCh-HHHHHHHHHHhCCCCEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHH
Confidence 4467887 5566666777899999999999987654322 22221 2579999999999876321 22233
Q ss_pred HHHHhhCceEEEecCcCCCcchhhhHHHHH
Q 020668 170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
+..+..+..++.+|+++|.|++++.+.+.+
T Consensus 130 ~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~ 159 (164)
T smart00175 130 AFAEEHGLPFFETSAKTNTNVEEAFEELAR 159 (164)
T ss_pred HHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 334445678999999999999998877654
No 176
>COG2262 HflX GTPases [General function prediction only]
Probab=98.45 E-value=9.1e-07 Score=85.56 Aligned_cols=121 Identities=21% Similarity=0.191 Sum_probs=82.7
Q ss_pred hhhcccccCcceee----------eeccccccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH----HHHH
Q 020668 79 EECDWADLDADLYY----------WTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL----MDQW 144 (323)
Q Consensus 79 e~e~~~~~~~~~~~----------~~~~l~~i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~----i~~~ 144 (323)
+...+.|+|...+. ++.....|+..|-+.....+-..+.+..+|++++|+|+.+|.-....+ +..-
T Consensus 220 ~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~e 299 (411)
T COG2262 220 ADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAE 299 (411)
T ss_pred cccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHH
Confidence 34445566665443 333445588888777777777778889999999999999883322211 1122
Q ss_pred h--CCCCeEEEEeccCCccHHhHHHHHHHHHhhCceEEEecCcCCCcchhhhHHHHHhhh
Q 020668 145 L--GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (323)
Q Consensus 145 l--~~k~~iiVlNK~DLl~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (323)
+ ..+|+|+|+||+|++....... .+.......+++||++|.|++.|++.|.....
T Consensus 300 l~~~~~p~i~v~NKiD~~~~~~~~~---~~~~~~~~~v~iSA~~~~gl~~L~~~i~~~l~ 356 (411)
T COG2262 300 IGADEIPIILVLNKIDLLEDEEILA---ELERGSPNPVFISAKTGEGLDLLRERIIELLS 356 (411)
T ss_pred cCCCCCCEEEEEecccccCchhhhh---hhhhcCCCeEEEEeccCcCHHHHHHHHHHHhh
Confidence 2 2689999999999987665222 12221125899999999999999988877654
No 177
>PLN03118 Rab family protein; Provisional
Probab=98.44 E-value=3.9e-07 Score=81.30 Aligned_cols=57 Identities=28% Similarity=0.401 Sum_probs=41.1
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEeCC---cEEEEecCCcc
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~---~~~liDTPGi~ 273 (323)
.++|+|+|.+|||||||+|+|++.......+..|++.....+.++. .+.|+||||..
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 73 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQE 73 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCch
Confidence 5789999999999999999999765434444444444444444433 46799999974
No 178
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.44 E-value=1.7e-07 Score=82.37 Aligned_cols=56 Identities=27% Similarity=0.439 Sum_probs=40.3
Q ss_pred eEeeeecCCCCChhhHHHhhhcC------ccccccCCCCceeeEEEE--Ee---------------CCcEEEEecCCcc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKR------RMCPAAPRPGVTRVLKWV--RF---------------GKDLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~------~~~~v~~~pgtT~~~~~~--~~---------------~~~~~liDTPGi~ 273 (323)
++|+++|.+|+|||||+|+|.+. .....+..+|+|.+.... .+ +..+.++||||..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 79 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA 79 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH
Confidence 36999999999999999999963 122234456888875321 11 3468899999973
No 179
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.44 E-value=4.6e-07 Score=76.51 Aligned_cols=56 Identities=25% Similarity=0.372 Sum_probs=39.1
Q ss_pred eEeeeecCCCCChhhHHHhhhcCcccc-ccCCCCceeeEEEEEeC---CcEEEEecCCcc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFG---KDLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~-v~~~pgtT~~~~~~~~~---~~~~liDTPGi~ 273 (323)
++|+++|.+|||||||+|+|++..... ..+..|.+.....+.++ -.+.++||||-.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~ 61 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE 61 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchH
Confidence 579999999999999999999876433 34444543333333333 246799999953
No 180
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.44 E-value=1.1e-06 Score=74.31 Aligned_cols=95 Identities=16% Similarity=0.115 Sum_probs=64.2
Q ss_pred cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-------CCCCeEEEEeccCCccHHhHH--HHHHHH
Q 020668 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------GNRKRILVLNREDMISMADRN--AWATYF 172 (323)
Q Consensus 102 ~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l-------~~k~~iiVlNK~DLl~~~~~~--~~~~~~ 172 (323)
++||+ .++.......++++|++++|+|..++.+.. .+..|+ .+.|+++|.||+|+.+..+.. ....+.
T Consensus 58 Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 134 (164)
T cd04101 58 DSAGQ-ELYSDMVSNYWESPSVFILVYDVSNKASFE--NCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFA 134 (164)
T ss_pred ECCCH-HHHHHHHHHHhCCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHH
Confidence 46776 555566667789999999999987653321 122221 257999999999997653221 112222
Q ss_pred HhhCceEEEecCcCCCcchhhhHHHHH
Q 020668 173 AKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 173 ~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
...+..++.+|+++|.|++++.+.+.+
T Consensus 135 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 161 (164)
T cd04101 135 QANQLKFFKTSALRGVGYEEPFESLAR 161 (164)
T ss_pred HHcCCeEEEEeCCCCCChHHHHHHHHH
Confidence 334567899999999999998876544
No 181
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.44 E-value=4.6e-07 Score=76.42 Aligned_cols=56 Identities=27% Similarity=0.317 Sum_probs=39.7
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccc-cccCCCCceeeEEEEEeC---CcEEEEecCCcc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFG---KDLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~-~v~~~pgtT~~~~~~~~~---~~~~liDTPGi~ 273 (323)
++|+++|.+|||||||+|+|.+.... ...+.++.+.....+..+ ..+.++||||..
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 60 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQE 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCch
Confidence 36899999999999999999976532 234455555444444443 247899999964
No 182
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.44 E-value=6.7e-07 Score=76.15 Aligned_cols=97 Identities=11% Similarity=0.048 Sum_probs=61.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCC--CCcHHHHHHhC-----CCCeEEEEeccCCccHHhHHHHHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS--TTHPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYF 172 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~--~~~~~i~~~l~-----~k~~iiVlNK~DLl~~~~~~~~~~~~ 172 (323)
+-++||+ .++........+.+|++|+|+|+....+ .....+...+. +.|++++.||+|+.+.....+..+.+
T Consensus 48 l~D~~G~-~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~ 126 (159)
T cd04150 48 VWDVGGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKL 126 (159)
T ss_pred EEECCCC-HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHh
Confidence 3346887 4555555667899999999999875432 11222333332 47999999999986432222222222
Q ss_pred H-----hhCceEEEecCcCCCcchhhhHHH
Q 020668 173 A-----KQGTKVIFSNGQLGMGTMKLSRLA 197 (323)
Q Consensus 173 ~-----~~g~~vi~iSa~~g~gi~~L~~~l 197 (323)
. .....++.+||++|.|++++.+.|
T Consensus 127 ~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l 156 (159)
T cd04150 127 GLHSLRNRNWYIQATCATSGDGLYEGLDWL 156 (159)
T ss_pred CccccCCCCEEEEEeeCCCCCCHHHHHHHH
Confidence 1 112346789999999999887665
No 183
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.43 E-value=3.4e-07 Score=78.09 Aligned_cols=99 Identities=19% Similarity=0.212 Sum_probs=64.2
Q ss_pred cccccchHHH------HHHHHHHHHhhcCeEEEEEeCCCCC-----CCCc------HHHHHH--------hCCCCeEEEE
Q 020668 100 VQWYPGHIAK------TEKELKDQLKLMDVVIEVRDARIPL-----STTH------PLMDQW--------LGNRKRILVL 154 (323)
Q Consensus 100 i~~~PGh~~k------~~~~l~~~i~~aDlIl~VvDar~~~-----~~~~------~~i~~~--------l~~k~~iiVl 154 (323)
+-++||+... ..+++...+..+|++++|+|+..+. ...+ ..+... +.++|+++|+
T Consensus 48 i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 127 (176)
T cd01881 48 VADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVL 127 (176)
T ss_pred EEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEE
Confidence 4556776321 1234456678899999999998763 1111 011111 2368999999
Q ss_pred eccCCccHHhHHHHH--HHHHhhCceEEEecCcCCCcchhhhHHHH
Q 020668 155 NREDMISMADRNAWA--TYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (323)
Q Consensus 155 NK~DLl~~~~~~~~~--~~~~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (323)
||+|+........+. ......+..++++|++++.|++++.+.+.
T Consensus 128 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~ 173 (176)
T cd01881 128 NKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIY 173 (176)
T ss_pred EchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHH
Confidence 999998776555441 12222346789999999999998877653
No 184
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.43 E-value=3.1e-07 Score=75.59 Aligned_cols=54 Identities=33% Similarity=0.462 Sum_probs=43.6
Q ss_pred eecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe----CCcEEEEecCCccCC
Q 020668 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGIIPM 275 (323)
Q Consensus 222 ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~----~~~~~liDTPGi~~~ 275 (323)
++|.+|+|||||+|+|.+......+..+++|........ ...+.++||||+...
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~ 58 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEA 58 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCcc
Confidence 589999999999999998877667788888877554332 457999999999754
No 185
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.43 E-value=1.1e-06 Score=75.79 Aligned_cols=99 Identities=11% Similarity=-0.004 Sum_probs=66.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh--CCCCeEEEEeccCCccHHh--HHHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDMISMAD--RNAWAT 170 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l--~~k~~iiVlNK~DLl~~~~--~~~~~~ 170 (323)
+-++||+ .++.......++.+|++++|+|+.++.+..+. .+.... .+.|+++|.||+|+.+... .++..+
T Consensus 67 i~Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~ 145 (180)
T cd04127 67 LWDTAGQ-ERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKA 145 (180)
T ss_pred EEeCCCh-HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHH
Confidence 3456887 56666667788999999999998765432221 111111 2568999999999975322 122233
Q ss_pred HHHhhCceEEEecCcCCCcchhhhHHHHH
Q 020668 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
+..+.+..++.+||++|.|++++.+.+.+
T Consensus 146 ~~~~~~~~~~e~Sak~~~~v~~l~~~l~~ 174 (180)
T cd04127 146 LADKYGIPYFETSAATGTNVEKAVERLLD 174 (180)
T ss_pred HHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 33445678899999999999998877654
No 186
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.43 E-value=8.5e-07 Score=73.59 Aligned_cols=99 Identities=8% Similarity=-0.007 Sum_probs=66.7
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----CCCCeEEEEeccCCccHHhHHHHHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l-----~~k~~iiVlNK~DLl~~~~~~~~~~~~ 172 (323)
+.++||+ .++.......+..+|++++|+|+.+..... ...+..++ .++|+++|+||+|+.+........+.+
T Consensus 48 ~~D~~g~-~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~ 126 (159)
T cd04159 48 VWDLGGQ-PRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQM 126 (159)
T ss_pred EEECCCC-HhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHh
Confidence 4567887 556666677889999999999987643211 11222322 257999999999987654433333332
Q ss_pred H-----hhCceEEEecCcCCCcchhhhHHHHH
Q 020668 173 A-----KQGTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 173 ~-----~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
. .....++.+|+++|.|++++.+.+.+
T Consensus 127 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 127 NLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred CcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 1 11246899999999999998877653
No 187
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.43 E-value=7e-07 Score=77.12 Aligned_cols=97 Identities=11% Similarity=0.018 Sum_probs=62.7
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHhC-----CCCeEEEEeccCCccHHhHHHHHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYF 172 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l~-----~k~~iiVlNK~DLl~~~~~~~~~~~~ 172 (323)
+-+.||+ ..+.+.....+..+|++++|+|+.++.... ...+.+++. +.|+++++||+|+.......+..+.+
T Consensus 63 l~D~~G~-~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l 141 (174)
T cd04153 63 MWDIGGQ-ESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESL 141 (174)
T ss_pred EEECCCC-HHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHh
Confidence 3356887 445555556789999999999987653211 122333332 47999999999986532222222222
Q ss_pred -----HhhCceEEEecCcCCCcchhhhHHH
Q 020668 173 -----AKQGTKVIFSNGQLGMGTMKLSRLA 197 (323)
Q Consensus 173 -----~~~g~~vi~iSa~~g~gi~~L~~~l 197 (323)
.+.+..++++||++|.|++++.+.|
T Consensus 142 ~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l 171 (174)
T cd04153 142 GLTSIRDHTWHIQGCCALTGEGLPEGLDWI 171 (174)
T ss_pred CcccccCCceEEEecccCCCCCHHHHHHHH
Confidence 1223568999999999999887765
No 188
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.42 E-value=5.7e-07 Score=76.98 Aligned_cols=56 Identities=25% Similarity=0.366 Sum_probs=38.6
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCcccccc-CCCCceeeEEEEEeCC---cEEEEecCCc
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAA-PRPGVTRVLKWVRFGK---DLEFLDSPGI 272 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~-~~pgtT~~~~~~~~~~---~~~liDTPGi 272 (323)
.++|+++|.+|||||||+|++.+....... ...|.+.....+..+. .+.++||||-
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 63 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ 63 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc
Confidence 368999999999999999999976542222 2234443333344432 5789999995
No 189
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=1e-06 Score=82.75 Aligned_cols=102 Identities=19% Similarity=0.178 Sum_probs=79.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCC----CCCCcHHHHHHhCCCCeEEEEeccCCccHHhHHHH----HHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIP----LSTTHPLMDQWLGNRKRILVLNREDMISMADRNAW----ATY 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~----~~~~~~~i~~~l~~k~~iiVlNK~DLl~~~~~~~~----~~~ 171 (323)
+-+.||| +-....|...+.-.|-+|+|++|..| .+..|....+.++-|++++|=||+||++.++..+- .++
T Consensus 90 fVDaPGH-e~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~E~AlE~y~qIk~F 168 (415)
T COG5257 90 FVDAPGH-ETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSRERALENYEQIKEF 168 (415)
T ss_pred EeeCCch-HHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecHHHHHHHHHHHHHH
Confidence 5688999 66778888888999999999999754 46666666677788999999999999988753322 222
Q ss_pred HHh---hCceEEEecCcCCCcchhhhHHHHHhhh
Q 020668 172 FAK---QGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (323)
Q Consensus 172 ~~~---~g~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (323)
.+. .+.+++++||.++.||+.|.+.|.+.-+
T Consensus 169 vkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip 202 (415)
T COG5257 169 VKGTVAENAPIIPISAQHKANIDALIEAIEKYIP 202 (415)
T ss_pred hcccccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence 221 1257999999999999999998887654
No 190
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=1.2e-06 Score=87.07 Aligned_cols=101 Identities=17% Similarity=0.070 Sum_probs=71.0
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCeEEEEeccCCccHHhHHHHHHHHHhhC-
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQG- 176 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~iiVlNK~DLl~~~~~~~~~~~~~~~g- 176 (323)
+-++|||.+ +...=.+..+-+|++++|+|+.++......+-.+.++ +.|+++++||+|+.+.+-. .....+.+.|
T Consensus 59 FiDTPGHeA-Ft~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~-~v~~el~~~gl 136 (509)
T COG0532 59 FIDTPGHEA-FTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPD-KVKQELQEYGL 136 (509)
T ss_pred EEcCCcHHH-HHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHH-HHHHHHHHcCC
Confidence 558999943 3333335678899999999999988765544444444 7899999999999854321 1112222333
Q ss_pred --------ceEEEecCcCCCcchhhhHHHHHhhh
Q 020668 177 --------TKVIFSNGQLGMGTMKLSRLAKALAS 202 (323)
Q Consensus 177 --------~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (323)
..++++||++|+|+.+|++.+.-++.
T Consensus 137 ~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~ae 170 (509)
T COG0532 137 VPEEWGGDVIFVPVSAKTGEGIDELLELILLLAE 170 (509)
T ss_pred CHhhcCCceEEEEeeccCCCCHHHHHHHHHHHHH
Confidence 35889999999999999887765544
No 191
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.41 E-value=2e-06 Score=70.72 Aligned_cols=88 Identities=18% Similarity=0.206 Sum_probs=64.5
Q ss_pred HHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHH--hCCCCeEEEEeccCCccHHhHHHHHH---H--HHhhCceEEEecC
Q 020668 112 KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW--LGNRKRILVLNREDMISMADRNAWAT---Y--FAKQGTKVIFSNG 184 (323)
Q Consensus 112 ~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~--l~~k~~iiVlNK~DLl~~~~~~~~~~---~--~~~~g~~vi~iSa 184 (323)
+.+...+..+|++++|+|+..+.......+... ..+.|+++|+||+|+........+.. . ....+..++++|+
T Consensus 67 ~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 146 (163)
T cd00880 67 ELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSA 146 (163)
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEee
Confidence 455677899999999999998776665542222 23789999999999998766555432 1 1112367899999
Q ss_pred cCCCcchhhhHHHHH
Q 020668 185 QLGMGTMKLSRLAKA 199 (323)
Q Consensus 185 ~~g~gi~~L~~~l~~ 199 (323)
+++.|+.++++.+.+
T Consensus 147 ~~~~~v~~l~~~l~~ 161 (163)
T cd00880 147 LTGEGIDELREALIE 161 (163)
T ss_pred eccCCHHHHHHHHHh
Confidence 999999988877654
No 192
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=1.4e-06 Score=82.27 Aligned_cols=88 Identities=22% Similarity=0.236 Sum_probs=74.9
Q ss_pred hHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC---CCCcHHHHHHhCCCCeE
Q 020668 77 YEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL---STTHPLMDQWLGNRKRI 151 (323)
Q Consensus 77 ~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~---~~~~~~i~~~l~~k~~i 151 (323)
-.|+..++++++..+...+..|. =.++||| +.|.++|.....+.|..|+||.+.+++ +.++..+++.++-+.++
T Consensus 96 PEEkaRGITIn~aHveYeTa~RhYaH~DCPGH-ADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~iv 174 (449)
T KOG0460|consen 96 PEEKARGITINAAHVEYETAKRHYAHTDCPGH-ADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIV 174 (449)
T ss_pred hhhhhccceEeeeeeeeeccccccccCCCCch-HHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEE
Confidence 34777788999999999999998 5589999 889999999999999999999888765 55566677777888999
Q ss_pred EEEeccCCccHHhH
Q 020668 152 LVLNREDMISMADR 165 (323)
Q Consensus 152 iVlNK~DLl~~~~~ 165 (323)
+.+||.|+++..+.
T Consensus 175 vfiNKvD~V~d~e~ 188 (449)
T KOG0460|consen 175 VFINKVDLVDDPEM 188 (449)
T ss_pred EEEecccccCCHHH
Confidence 99999999966543
No 193
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.40 E-value=6.6e-07 Score=75.89 Aligned_cols=55 Identities=16% Similarity=0.350 Sum_probs=38.4
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCcc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (323)
++|+++|.+|||||||+|+|.+... .....|.++.+. ..+..+. .+.++||||..
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 63 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEF-NLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQE 63 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceEEEEEEEEECCEEEEEEEEeCCChH
Confidence 5799999999999999999997653 333344444332 2333332 47799999974
No 194
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.40 E-value=1.8e-06 Score=73.63 Aligned_cols=97 Identities=13% Similarity=0.038 Sum_probs=65.5
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--------CCCCeEEEEeccCCccHHh--HHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMISMAD--RNAWA 169 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--------~~k~~iiVlNK~DLl~~~~--~~~~~ 169 (323)
+-++||+ .++.......++.+|.+++|+|..++.+.. .+..|+ .+.|+++|.||+|+.+... .....
T Consensus 54 l~Dt~g~-~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~ 130 (165)
T cd01865 54 IWDTAGQ-ERYRTITTAYYRGAMGFILMYDITNEESFN--AVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGR 130 (165)
T ss_pred EEECCCh-HHHHHHHHHHccCCcEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHH
Confidence 3457887 445555566789999999999987543221 222222 1468999999999975432 12222
Q ss_pred HHHHhhCceEEEecCcCCCcchhhhHHHHH
Q 020668 170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
+.....+..++.+||++|.|+.+|.+.+..
T Consensus 131 ~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (165)
T cd01865 131 QLADQLGFEFFEASAKENINVKQVFERLVD 160 (165)
T ss_pred HHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 334455678999999999999988776644
No 195
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.39 E-value=1.3e-06 Score=74.33 Aligned_cols=97 Identities=14% Similarity=0.094 Sum_probs=65.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--------CCCCeEEEEeccCCccHHh--HHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMISMAD--RNAWA 169 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--------~~k~~iiVlNK~DLl~~~~--~~~~~ 169 (323)
+-++||+ .++.......++.+|++|+|+|+.++.+.. .+..++ .+.|+++|.||+|+..... .++..
T Consensus 55 i~D~~G~-~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~--~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~ 131 (166)
T cd01869 55 IWDTAGQ-ERFRTITSSYYRGAHGIIIVYDVTDQESFN--NVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQ 131 (166)
T ss_pred EEECCCc-HhHHHHHHHHhCcCCEEEEEEECcCHHHHH--hHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHH
Confidence 3467897 456666667789999999999987643221 122222 2579999999999865432 12222
Q ss_pred HHHHhhCceEEEecCcCCCcchhhhHHHHH
Q 020668 170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
.+....+..++.+|+++|.|++++.+.+.+
T Consensus 132 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 132 EFADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred HHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 333345678999999999999988776544
No 196
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.39 E-value=5e-07 Score=77.74 Aligned_cols=55 Identities=25% Similarity=0.436 Sum_probs=38.3
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe-CCcEEEEecCCcc
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (323)
.++|+++|.+|||||||+|+|.+.......+..|.... .+.. +..+.++||||..
T Consensus 14 ~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~--~~~~~~~~l~l~D~~G~~ 69 (173)
T cd04154 14 EMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIK--TLEYEGYKLNIWDVGGQK 69 (173)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceE--EEEECCEEEEEEECCCCH
Confidence 46899999999999999999997744333333343222 2222 3457899999974
No 197
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.39 E-value=1.6e-06 Score=76.07 Aligned_cols=102 Identities=10% Similarity=0.043 Sum_probs=67.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHhC-CCCeEEEEeccCCccHHh--HHHHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLG-NRKRILVLNREDMISMAD--RNAWATY 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l~-~k~~iiVlNK~DLl~~~~--~~~~~~~ 171 (323)
+-++||+ .++.......+..+|++|+|+|+....+..+ ..+..... +.|+++|+||+|+....+ ..+....
T Consensus 54 i~Dt~G~-~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l 132 (191)
T cd04112 54 IWDTAGQ-ERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERL 132 (191)
T ss_pred EEeCCCc-HHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHH
Confidence 3478997 4455555567889999999999876532211 11222222 568999999999964321 1222223
Q ss_pred HHhhCceEEEecCcCCCcchhhhHHHHHhhh
Q 020668 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (323)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (323)
....+..++.+||++|.|+++|.+.+.+...
T Consensus 133 ~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~ 163 (191)
T cd04112 133 AKEYGVPFMETSAKTGLNVELAFTAVAKELK 163 (191)
T ss_pred HHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3345678999999999999999887765543
No 198
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.39 E-value=1.1e-06 Score=74.06 Aligned_cols=98 Identities=12% Similarity=0.007 Sum_probs=64.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----CCCCeEEEEeccCCccHHhHHHHHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l-----~~k~~iiVlNK~DLl~~~~~~~~~~~~ 172 (323)
+-++||+ .++.......+..+|++++|+|+..+.+.. ...+...+ .+.|+++|+||+|+.......+..+.+
T Consensus 47 i~D~~G~-~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~ 125 (158)
T cd00878 47 VWDVGGQ-DKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKL 125 (158)
T ss_pred EEECCCC-hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhh
Confidence 4457888 445555556779999999999998653221 12222222 267999999999998654322322222
Q ss_pred Hh-----hCceEEEecCcCCCcchhhhHHHH
Q 020668 173 AK-----QGTKVIFSNGQLGMGTMKLSRLAK 198 (323)
Q Consensus 173 ~~-----~g~~vi~iSa~~g~gi~~L~~~l~ 198 (323)
.. ....++.+|+++|.|++++.+.|.
T Consensus 126 ~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~ 156 (158)
T cd00878 126 GLEKILGRRWHIQPCSAVTGDGLDEGLDWLL 156 (158)
T ss_pred ChhhccCCcEEEEEeeCCCCCCHHHHHHHHh
Confidence 21 224689999999999998876653
No 199
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.38 E-value=6.1e-07 Score=83.95 Aligned_cols=59 Identities=22% Similarity=0.299 Sum_probs=39.9
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccC--------CCCce-eeEEE--EEeC---CcEEEEecCCccC
Q 020668 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP--------RPGVT-RVLKW--VRFG---KDLEFLDSPGIIP 274 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~--------~pgtT-~~~~~--~~~~---~~~~liDTPGi~~ 274 (323)
..++|+++|.+|+|||||+|+|++........ .+.|+ ..... +... -.+.++||||+-.
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd 75 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGD 75 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccc
Confidence 35789999999999999999999876554432 22332 22211 1112 2488999999964
No 200
>PRK10218 GTP-binding protein; Provisional
Probab=98.38 E-value=1.5e-06 Score=89.58 Aligned_cols=129 Identities=16% Similarity=0.040 Sum_probs=89.6
Q ss_pred CCcchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--C
Q 020668 71 NGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--G 146 (323)
Q Consensus 71 ~~~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~ 146 (323)
...|-...|++.+.++......+...-.+ +-++||| .++...+...++.+|.+|+|+|+..+.......+...+ .
T Consensus 41 ~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~-~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~ 119 (607)
T PRK10218 41 RVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGH-ADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAY 119 (607)
T ss_pred eeeccccccccCceEEEEEEEEEecCCEEEEEEECCCc-chhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHc
Confidence 45666667888888888777766654443 6688999 56778888899999999999999887654444443332 3
Q ss_pred CCCeEEEEeccCCccH---HhHHHHHHHHHhh-------CceEEEecCcCCCc----------chhhhHHHHHh
Q 020668 147 NRKRILVLNREDMISM---ADRNAWATYFAKQ-------GTKVIFSNGQLGMG----------TMKLSRLAKAL 200 (323)
Q Consensus 147 ~k~~iiVlNK~DLl~~---~~~~~~~~~~~~~-------g~~vi~iSa~~g~g----------i~~L~~~l~~l 200 (323)
+.|.++++||+|+... ...++..+.|..+ .++++++||++|.+ +..|++.+...
T Consensus 120 gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~ 193 (607)
T PRK10218 120 GLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDH 193 (607)
T ss_pred CCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHh
Confidence 7899999999998642 2233444444332 25689999999984 55565554443
No 201
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.38 E-value=1.8e-06 Score=86.25 Aligned_cols=96 Identities=26% Similarity=0.301 Sum_probs=68.0
Q ss_pred cccccchHH------H-HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCeEEEEeccCCccHHhHHHHHHHH
Q 020668 100 VQWYPGHIA------K-TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYF 172 (323)
Q Consensus 100 i~~~PGh~~------k-~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~iiVlNK~DLl~~~~~~~~~~~~ 172 (323)
+-++||+.. . ..+.....+..+|++++|+|+..+.+..+..+.....++|+++|+||+|+.+.....
T Consensus 267 l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~~~~~piiiV~NK~DL~~~~~~~------ 340 (449)
T PRK05291 267 LIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEELKDKPVIVVLNKADLTGEIDLE------ 340 (449)
T ss_pred EEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHhcCCCCcEEEEEhhhccccchhh------
Confidence 456777631 1 123345678999999999999887665544433334578999999999997654322
Q ss_pred HhhCceEEEecCcCCCcchhhhHHHHHhh
Q 020668 173 AKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 173 ~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
...+..++++|+++|.|+++|.+.+.+..
T Consensus 341 ~~~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 341 EENGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred hccCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 22345789999999999999988876654
No 202
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.38 E-value=1.5e-06 Score=73.22 Aligned_cols=99 Identities=14% Similarity=0.086 Sum_probs=67.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHhC----CCCeEEEEeccCCccHHh--HHHHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG----NRKRILVLNREDMISMAD--RNAWATY 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l~----~k~~iiVlNK~DLl~~~~--~~~~~~~ 171 (323)
+-++||+ .++.......+..+|++++|+|+.++.+..+ ..+..+.. +.|+++|+||+|+....+ .++....
T Consensus 53 ~~D~~G~-~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~ 131 (161)
T cd01861 53 LWDTAGQ-ERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKK 131 (161)
T ss_pred EEECCCc-HHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHH
Confidence 4467887 5566667778899999999999976543222 11222221 378999999999954321 1222233
Q ss_pred HHhhCceEEEecCcCCCcchhhhHHHHH
Q 020668 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
....+..++.+|++++.|++++.+.+.+
T Consensus 132 ~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 159 (161)
T cd01861 132 AKELNAMFIETSAKAGHNVKELFRKIAS 159 (161)
T ss_pred HHHhCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 3345678899999999999998877654
No 203
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.38 E-value=1.6e-06 Score=91.54 Aligned_cols=100 Identities=15% Similarity=0.060 Sum_probs=69.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCeEEEEeccCCccH--HhHHHHHHHH---
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISM--ADRNAWATYF--- 172 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~iiVlNK~DLl~~--~~~~~~~~~~--- 172 (323)
+-++||| ..+.......+..+|++|+|+|+.++......+..... .+.|+++++||+|+... ......+..+
T Consensus 341 fiDTPGh-e~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~ 419 (787)
T PRK05306 341 FLDTPGH-EAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLV 419 (787)
T ss_pred EEECCCC-ccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHhccc
Confidence 6688999 55666666788999999999999887654433333333 27899999999999643 2222211111
Q ss_pred -HhhC--ceEEEecCcCCCcchhhhHHHHHh
Q 020668 173 -AKQG--TKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 173 -~~~g--~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
...+ ..++++||++|.|+++|++.+...
T Consensus 420 ~e~~g~~vp~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 420 PEEWGGDTIFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred HHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence 1122 578999999999999998877643
No 204
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.38 E-value=2e-06 Score=80.32 Aligned_cols=89 Identities=17% Similarity=0.090 Sum_probs=67.8
Q ss_pred CcchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--C
Q 020668 72 GSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N 147 (323)
Q Consensus 72 ~~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~ 147 (323)
+.|-...|++.+.+++.....|...-.. +-++|||. ++..++...+..+|++++|+|+..+.......+.+.+. +
T Consensus 38 ~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~-df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~ 116 (270)
T cd01886 38 TMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHV-DFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYN 116 (270)
T ss_pred ccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcH-HHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4555566788888888777666544333 66899994 57777889999999999999998877655555555543 7
Q ss_pred CCeEEEEeccCCcc
Q 020668 148 RKRILVLNREDMIS 161 (323)
Q Consensus 148 k~~iiVlNK~DLl~ 161 (323)
+|+++++||+|+..
T Consensus 117 ~p~ivviNK~D~~~ 130 (270)
T cd01886 117 VPRIAFVNKMDRTG 130 (270)
T ss_pred CCEEEEEECCCCCC
Confidence 89999999999874
No 205
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.38 E-value=8.8e-07 Score=76.05 Aligned_cols=99 Identities=14% Similarity=0.089 Sum_probs=63.5
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC--CcHHHHHHhC-----CCCeEEEEeccCCccHHhHHHHHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYF 172 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~--~~~~i~~~l~-----~k~~iiVlNK~DLl~~~~~~~~~~~~ 172 (323)
+-+.||+ .++.......+..+|.+++|+|+.++.+. ....+..++. +.|+++|.||+|+.......+..+++
T Consensus 47 l~Dt~G~-~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~ 125 (169)
T cd04158 47 IWDVGGK-HKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELL 125 (169)
T ss_pred EEECCCC-hhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHh
Confidence 4457887 44555556778999999999998765322 2223333332 46899999999986432222222222
Q ss_pred H--hh----CceEEEecCcCCCcchhhhHHHHH
Q 020668 173 A--KQ----GTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 173 ~--~~----g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
. +. ...++.+||++|.|++++.+.|.+
T Consensus 126 ~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~ 158 (169)
T cd04158 126 SLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSR 158 (169)
T ss_pred CCccccCCCcEEEEeCcCCCCCCHHHHHHHHHH
Confidence 1 11 125678899999999998877653
No 206
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.38 E-value=2e-06 Score=90.12 Aligned_cols=101 Identities=19% Similarity=0.131 Sum_probs=71.5
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCeEEEEeccCCccHH--hHHHHHHHH---
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMA--DRNAWATYF--- 172 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~iiVlNK~DLl~~~--~~~~~~~~~--- 172 (323)
+-++||| ..+.......+..+|++|+|+|+.++......+....+. +.|+++|+||+|+.... +....+..+
T Consensus 299 fiDTPGh-e~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll 377 (742)
T CHL00189 299 FLDTPGH-EAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKYNLI 377 (742)
T ss_pred EEECCcH-HHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHhccc
Confidence 5678999 567777778899999999999998875443333333332 78999999999997532 222222111
Q ss_pred -HhhC--ceEEEecCcCCCcchhhhHHHHHhh
Q 020668 173 -AKQG--TKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 173 -~~~g--~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
...+ ..++++||++|.|+++|++.+..+.
T Consensus 378 ~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 378 PEKWGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred hHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 1123 5689999999999999988876654
No 207
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.38 E-value=1.9e-06 Score=72.43 Aligned_cols=98 Identities=14% Similarity=-0.030 Sum_probs=66.6
Q ss_pred ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----CCCCeEEEEeccCCccH--HhHHHHHHH
Q 020668 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISM--ADRNAWATY 171 (323)
Q Consensus 101 ~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l-----~~k~~iiVlNK~DLl~~--~~~~~~~~~ 171 (323)
-+.||+ ..+.......++.+|.+++++|...+.+.. ...+..++ .++|+++|+||+|+.+. .........
T Consensus 53 ~D~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~ 131 (164)
T cd04139 53 LDTAGQ-EDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANL 131 (164)
T ss_pred EECCCh-hhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHH
Confidence 356887 445566667789999999999987653211 12222222 26899999999999762 122233334
Q ss_pred HHhhCceEEEecCcCCCcchhhhHHHHH
Q 020668 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
....+.+++.+|+++|.|++++.+.+.+
T Consensus 132 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 132 ARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred HHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 4455678999999999999998876643
No 208
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=7.1e-07 Score=88.71 Aligned_cols=135 Identities=18% Similarity=0.124 Sum_probs=96.0
Q ss_pred CCCCCCCCcchhhHhhhcccccCcc--eeeeec---cccccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH
Q 020668 65 GNSNNSNGSIEAYEEECDWADLDAD--LYYWTK---SLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP 139 (323)
Q Consensus 65 ~~~~~~~~~~~~~~e~e~~~~~~~~--~~~~~~---~l~~i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~ 139 (323)
.+.....+.|.++=|||-++|+.+- -+.|.. -+--+.++||| ..+.-+....+.-||-+|+||||..++..--.
T Consensus 89 ~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH-vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~ 167 (650)
T KOG0462|consen 89 NNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH-VDFSGEVSRSLAACDGALLVVDASQGVQAQTV 167 (650)
T ss_pred CCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc-ccccceehehhhhcCceEEEEEcCcCchHHHH
Confidence 3444567889999999999987654 233333 23348899999 67888899999999999999999987743221
Q ss_pred -HHHHHh-CCCCeEEEEeccCCccH--HhHHH-HHHHHHhhCceEEEecCcCCCcchhhhHHHHHh
Q 020668 140 -LMDQWL-GNRKRILVLNREDMISM--ADRNA-WATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 140 -~i~~~l-~~k~~iiVlNK~DLl~~--~~~~~-~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
.+...+ .+-.+|.|+||+|+-.. ++... ..+.|.....+++.+||++|.|+++|++.+-+-
T Consensus 168 anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~r 233 (650)
T KOG0462|consen 168 ANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRR 233 (650)
T ss_pred HHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhh
Confidence 222222 37889999999998643 33322 233343344689999999999999988776543
No 209
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.37 E-value=7.3e-07 Score=76.23 Aligned_cols=55 Identities=25% Similarity=0.358 Sum_probs=39.6
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe-CCcEEEEecCCcc
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (323)
..+|+++|.+|||||||+|+|.+.......+..|.+.. .+.. +..+.++||||..
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~--~i~~~~~~~~~~D~~G~~ 69 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIK--TVQSDGFKLNVWDIGGQR 69 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceE--EEEECCEEEEEEECCCCH
Confidence 57899999999999999999998654333444454332 2222 4568899999964
No 210
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=2.5e-06 Score=79.31 Aligned_cols=90 Identities=22% Similarity=0.190 Sum_probs=74.8
Q ss_pred hHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC---CCCcHHHHHHhCCCCeE
Q 020668 77 YEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL---STTHPLMDQWLGNRKRI 151 (323)
Q Consensus 77 ~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~---~~~~~~i~~~l~~k~~i 151 (323)
-.|++-+++++.......+..|. --++||| +.|.++|...+.+.|-.|+|+.|.+++ +..+..+.+..+-..++
T Consensus 54 PeEk~rGITIntahveyet~~rhyahVDcPGH-aDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~iv 132 (394)
T COG0050 54 PEEKARGITINTAHVEYETANRHYAHVDCPGH-ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIV 132 (394)
T ss_pred chHhhcCceeccceeEEecCCceEEeccCCCh-HHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEE
Confidence 45889999999999999999887 4589999 889999999999999999999887765 44555566666667889
Q ss_pred EEEeccCCccHHhHHH
Q 020668 152 LVLNREDMISMADRNA 167 (323)
Q Consensus 152 iVlNK~DLl~~~~~~~ 167 (323)
+++||+|+++..++.+
T Consensus 133 vflnK~Dmvdd~elle 148 (394)
T COG0050 133 VFLNKVDMVDDEELLE 148 (394)
T ss_pred EEEecccccCcHHHHH
Confidence 9999999998655433
No 211
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.37 E-value=1.3e-07 Score=81.06 Aligned_cols=77 Identities=22% Similarity=0.163 Sum_probs=54.5
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCeEEEEeccCCccHHhHHHHHHHH-HhhCceEEEecCcCCCcchhhhH
Q 020668 119 KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYF-AKQGTKVIFSNGQLGMGTMKLSR 195 (323)
Q Consensus 119 ~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~iiVlNK~DLl~~~~~~~~~~~~-~~~g~~vi~iSa~~g~gi~~L~~ 195 (323)
++.|+++.|+|+... .++..+...+. ++|+++|+||+|++......-..+.+ +.+|.+++++||++++|+++|++
T Consensus 77 ~~~D~ii~VvDa~~l--~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~ 154 (156)
T PF02421_consen 77 EKPDLIIVVVDATNL--ERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELKD 154 (156)
T ss_dssp TSSSEEEEEEEGGGH--HHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHHH
T ss_pred cCCCEEEEECCCCCH--HHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHHh
Confidence 689999999999863 23334433332 89999999999998765321111222 33688999999999999999877
Q ss_pred HH
Q 020668 196 LA 197 (323)
Q Consensus 196 ~l 197 (323)
.+
T Consensus 155 ~I 156 (156)
T PF02421_consen 155 AI 156 (156)
T ss_dssp HH
T ss_pred hC
Confidence 53
No 212
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.37 E-value=1.6e-06 Score=72.61 Aligned_cols=98 Identities=10% Similarity=-0.018 Sum_probs=64.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHh--CCCCeEEEEeccCCccHHh-HHHHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWL--GNRKRILVLNREDMISMAD-RNAWATY 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l--~~k~~iiVlNK~DLl~~~~-~~~~~~~ 171 (323)
+-++||+ .++.......++.+|.+++|+|..+..+..+ ..+.++. .+.|+++|.||+|+.+... ..+..+.
T Consensus 53 i~Dt~G~-~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~ 131 (162)
T cd04138 53 ILDTAGQ-EEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDL 131 (162)
T ss_pred EEECCCC-cchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHH
Confidence 3456776 4455555667889999999999875432211 1122222 2679999999999976332 2223333
Q ss_pred HHhhCceEEEecCcCCCcchhhhHHHH
Q 020668 172 FAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (323)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (323)
....+..++.+||++|.|++++.+.+.
T Consensus 132 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (162)
T cd04138 132 AKSYGIPYIETSAKTRQGVEEAFYTLV 158 (162)
T ss_pred HHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence 445567899999999999998876654
No 213
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.36 E-value=1.9e-06 Score=71.37 Aligned_cols=97 Identities=15% Similarity=0.024 Sum_probs=65.5
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh-----CCCCeEEEEeccCCc-cHH-hHHHHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL-----GNRKRILVLNREDMI-SMA-DRNAWATY 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~-~~i~~~l-----~~k~~iiVlNK~DLl-~~~-~~~~~~~~ 171 (323)
+-++||+ ..+.......++++|++++|+|+.++.+... ..+...+ ...|+++++||+|+. +.. ..++..+.
T Consensus 53 l~D~~g~-~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~ 131 (159)
T cd00154 53 IWDTAGQ-ERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQF 131 (159)
T ss_pred EEecCCh-HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHH
Confidence 4467888 4555666777899999999999976432111 1111111 147999999999996 222 22333333
Q ss_pred HHhhCceEEEecCcCCCcchhhhHHH
Q 020668 172 FAKQGTKVIFSNGQLGMGTMKLSRLA 197 (323)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~l 197 (323)
....+..++.+|++++.|++++.+.+
T Consensus 132 ~~~~~~~~~~~sa~~~~~i~~~~~~i 157 (159)
T cd00154 132 AKENGLLFFETSAKTGENVEELFQSL 157 (159)
T ss_pred HHHcCCeEEEEecCCCCCHHHHHHHH
Confidence 44456789999999999999887765
No 214
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.36 E-value=1.7e-06 Score=72.87 Aligned_cols=98 Identities=16% Similarity=0.046 Sum_probs=64.5
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHh------CCCCeEEEEeccCCccHH--hHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWL------GNRKRILVLNREDMISMA--DRN 166 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l------~~k~~iiVlNK~DLl~~~--~~~ 166 (323)
+-++||+ .++..........+|++|+|+|..++.+..+ ..+..+. .+.|+++|.||+|+.+.. ...
T Consensus 53 i~Dt~G~-~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 131 (168)
T cd04119 53 FFDLSGH-PEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSED 131 (168)
T ss_pred EEECCcc-HHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHH
Confidence 3456887 4455555566799999999999886543211 1122222 246899999999997322 122
Q ss_pred HHHHHHHhhCceEEEecCcCCCcchhhhHHHH
Q 020668 167 AWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (323)
Q Consensus 167 ~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (323)
+......+.+..++.+||++|.|++++.+.+.
T Consensus 132 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 163 (168)
T cd04119 132 EGRLWAESKGFKYFETSACTGEGVNEMFQTLF 163 (168)
T ss_pred HHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 22233344567889999999999999877654
No 215
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.36 E-value=5.4e-07 Score=75.91 Aligned_cols=53 Identities=21% Similarity=0.357 Sum_probs=37.3
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEeC--CcEEEEecCCcc
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG--KDLEFLDSPGII 273 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~--~~~~liDTPGi~ 273 (323)
+|+++|.+|||||||+|++.+.......+..|.+. ..+..+ ..+.++||||..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~l~i~D~~G~~ 55 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNV--EMLQLEKHLSLTVWDVGGQE 55 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcce--EEEEeCCceEEEEEECCCCH
Confidence 37999999999999999999876544433333332 223333 358899999974
No 216
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.36 E-value=1.5e-06 Score=89.34 Aligned_cols=99 Identities=17% Similarity=0.077 Sum_probs=68.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCeEEEEeccCCccH--HhHHHHHHHH---
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISM--ADRNAWATYF--- 172 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~iiVlNK~DLl~~--~~~~~~~~~~--- 172 (323)
+-++||| ..+.......+..+|++++|+|+.++......+....+ .+.|+++++||+|+... ++...++..+
T Consensus 139 ~iDTPGh-e~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~ 217 (587)
T TIGR00487 139 FLDTPGH-EAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSEYGLV 217 (587)
T ss_pred EEECCCC-cchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHhhhh
Confidence 6688999 45666666778999999999999877644433333333 37899999999998642 2222222111
Q ss_pred -HhhC--ceEEEecCcCCCcchhhhHHHHH
Q 020668 173 -AKQG--TKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 173 -~~~g--~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
...+ ..++++||++|.|+++|.+.+..
T Consensus 218 ~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 218 PEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred HHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 0111 36899999999999999887653
No 217
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.35 E-value=1.5e-06 Score=75.25 Aligned_cols=99 Identities=11% Similarity=0.018 Sum_probs=62.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC--CcHHHHHHh-----CCCCeEEEEeccCCccHHhHHHHHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~--~~~~i~~~l-----~~k~~iiVlNK~DLl~~~~~~~~~~~~ 172 (323)
+-++||+ .++.......++.+|++|+|+|+.++.+. ....+..++ .+.|+++|.||+||.+.....+..+.+
T Consensus 61 l~D~~G~-~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~ 139 (175)
T smart00177 61 VWDVGGQ-DKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKL 139 (175)
T ss_pred EEECCCC-hhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHh
Confidence 4456777 44555555668999999999998765321 122233332 246899999999986432222222222
Q ss_pred H-----hhCceEEEecCcCCCcchhhhHHHHH
Q 020668 173 A-----KQGTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 173 ~-----~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
. .....++++||++|.|+.++.+.|.+
T Consensus 140 ~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 171 (175)
T smart00177 140 GLHSIRDRNWYIQPTCATSGDGLYEGLTWLSN 171 (175)
T ss_pred CccccCCCcEEEEEeeCCCCCCHHHHHHHHHH
Confidence 1 11134667999999999998776644
No 218
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.35 E-value=3.7e-07 Score=78.63 Aligned_cols=55 Identities=29% Similarity=0.412 Sum_probs=38.5
Q ss_pred EeeeecCCCCChhhHHHhhhcCcccccc---------------CCCCceeeEEEEEe---CCcEEEEecCCcc
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAA---------------PRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~---------------~~pgtT~~~~~~~~---~~~~~liDTPGi~ 273 (323)
+|+++|.+|+|||||+|+|.+....... ...|+|.+...... ...+.++||||..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 73 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHE 73 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcH
Confidence 3899999999999999999876543221 12456655433222 3468899999975
No 219
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.35 E-value=1.8e-06 Score=75.32 Aligned_cols=98 Identities=11% Similarity=0.014 Sum_probs=60.6
Q ss_pred cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----CCCCeEEEEeccCCccHHhHHHHHHHH--
Q 020668 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF-- 172 (323)
Q Consensus 102 ~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l-----~~k~~iiVlNK~DLl~~~~~~~~~~~~-- 172 (323)
+.||+ .++.......++.+|++++|+|+.++.+..+ ..+.++. .++|+++|+||+|+............+
T Consensus 58 Dt~G~-~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~ 136 (183)
T cd04152 58 DVGGQ-EKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLAL 136 (183)
T ss_pred ECCCc-HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCc
Confidence 45776 4444444556789999999999876532111 1122221 268999999999986432222222111
Q ss_pred Hhh----CceEEEecCcCCCcchhhhHHHHHh
Q 020668 173 AKQ----GTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 173 ~~~----g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
... +..++++||++|.|++++.+.+.+.
T Consensus 137 ~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~ 168 (183)
T cd04152 137 HELSASTPWHVQPACAIIGEGLQEGLEKLYEM 168 (183)
T ss_pred cccCCCCceEEEEeecccCCCHHHHHHHHHHH
Confidence 111 2357899999999999887765543
No 220
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.35 E-value=2.8e-06 Score=72.50 Aligned_cols=97 Identities=14% Similarity=0.085 Sum_probs=65.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--------CCCCeEEEEeccCCccHHh--HHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMISMAD--RNAWA 169 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--------~~k~~iiVlNK~DLl~~~~--~~~~~ 169 (323)
+-++||+ .++.......++.+|++++|+|+.++.+.. .+..++ .+.|+++|.||+|+.+..+ .+...
T Consensus 56 l~D~~g~-~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~ 132 (167)
T cd01867 56 IWDTAGQ-ERFRTITTAYYRGAMGIILVYDITDEKSFE--NIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGE 132 (167)
T ss_pred EEeCCch-HHHHHHHHHHhCCCCEEEEEEECcCHHHHH--hHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHH
Confidence 3467887 455555667789999999999987654322 222222 1468999999999975321 22223
Q ss_pred HHHHhhCceEEEecCcCCCcchhhhHHHHH
Q 020668 170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
+.....+..++.+||++|.|++++.+.+.+
T Consensus 133 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 162 (167)
T cd01867 133 ALADEYGIKFLETSAKANINVEEAFFTLAK 162 (167)
T ss_pred HHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 334445678899999999999988766543
No 221
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.34 E-value=1.7e-06 Score=73.93 Aligned_cols=100 Identities=10% Similarity=0.041 Sum_probs=64.6
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh----CCCCeEEEEeccCCccHHhH---HHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMISMADR---NAWAT 170 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l----~~k~~iiVlNK~DLl~~~~~---~~~~~ 170 (323)
+-++||+ .++...+...+..+|++++|+|+.++.+... ..+...+ .+.|+++|+||+|+.+.... ++...
T Consensus 51 i~Dt~G~-~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~ 129 (166)
T cd01893 51 IVDTSSR-PQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEML 129 (166)
T ss_pred EEeCCCc-hhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHH
Confidence 3456777 3445555666799999999999887654332 1122212 26799999999999765431 12111
Q ss_pred HH-HhhC--ceEEEecCcCCCcchhhhHHHHHh
Q 020668 171 YF-AKQG--TKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 171 ~~-~~~g--~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
.+ .+.. ..++.+||++|.|++++.+.+.+.
T Consensus 130 ~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~ 162 (166)
T cd01893 130 PIMNEFREIETCVECSAKTLINVSEVFYYAQKA 162 (166)
T ss_pred HHHHHHhcccEEEEeccccccCHHHHHHHHHHH
Confidence 11 1221 368899999999999988776543
No 222
>PTZ00099 rab6; Provisional
Probab=98.34 E-value=1.7e-06 Score=75.49 Aligned_cols=102 Identities=14% Similarity=0.029 Sum_probs=67.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHhC----CCCeEEEEeccCCccHH--hHHHHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG----NRKRILVLNREDMISMA--DRNAWATY 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l~----~k~~iiVlNK~DLl~~~--~~~~~~~~ 171 (323)
+-++||+ .++.......++.+|++|+|+|...+.+..+ ..+...+. +.|+++|.||+||.... ...+....
T Consensus 33 iwDt~G~-e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~e~~~~ 111 (176)
T PTZ00099 33 LWDTAGQ-ERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQK 111 (176)
T ss_pred EEECCCh-HHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCCCHHHHHHH
Confidence 3356887 5566666677899999999999876533222 22222221 45789999999996422 12222333
Q ss_pred HHhhCceEEEecCcCCCcchhhhHHHHHhhh
Q 020668 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (323)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (323)
....+..++.+||++|.|++++.+.+.+...
T Consensus 112 ~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~ 142 (176)
T PTZ00099 112 AQEYNTMFHETSAKAGHNIKVLFKKIAAKLP 142 (176)
T ss_pred HHHcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3444566888999999999998887665443
No 223
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.34 E-value=2.5e-06 Score=72.54 Aligned_cols=98 Identities=14% Similarity=0.033 Sum_probs=64.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHH-Hh----CCCCeEEEEeccCCccHHh--HHHHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQ-WL----GNRKRILVLNREDMISMAD--RNAWATY 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~-~~i~~-~l----~~k~~iiVlNK~DLl~~~~--~~~~~~~ 171 (323)
+-++||+ .++.......+..+|++++|+|+.++.+... ..+.. .. .+.|+++|.||+|+....+ .+...+.
T Consensus 56 i~D~~G~-~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 134 (165)
T cd01864 56 IWDTAGQ-ERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTL 134 (165)
T ss_pred EEECCCh-HHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHH
Confidence 4478998 5566666677889999999999987643221 11111 11 1568999999999975432 1222222
Q ss_pred HHhhC-ceEEEecCcCCCcchhhhHHHH
Q 020668 172 FAKQG-TKVIFSNGQLGMGTMKLSRLAK 198 (323)
Q Consensus 172 ~~~~g-~~vi~iSa~~g~gi~~L~~~l~ 198 (323)
.+..+ ..++.+||++|.|++++.+.+.
T Consensus 135 ~~~~~~~~~~e~Sa~~~~~v~~~~~~l~ 162 (165)
T cd01864 135 AEKNGMLAVLETSAKESQNVEEAFLLMA 162 (165)
T ss_pred HHHcCCcEEEEEECCCCCCHHHHHHHHH
Confidence 33334 3679999999999998877654
No 224
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.33 E-value=5.3e-07 Score=89.24 Aligned_cols=58 Identities=28% Similarity=0.371 Sum_probs=43.8
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccc------------------------------cCCCCceeeEEEEEe---CC
Q 020668 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA------------------------------APRPGVTRVLKWVRF---GK 262 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v------------------------------~~~pgtT~~~~~~~~---~~ 262 (323)
..++|+++|.+|+|||||+|+|+....... ...+|+|++.....+ +.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 357899999999999999999985332211 115899999765554 45
Q ss_pred cEEEEecCCcc
Q 020668 263 DLEFLDSPGII 273 (323)
Q Consensus 263 ~~~liDTPGi~ 273 (323)
.+.|+||||..
T Consensus 85 ~i~liDtpG~~ 95 (425)
T PRK12317 85 YFTIVDCPGHR 95 (425)
T ss_pred EEEEEECCCcc
Confidence 68899999963
No 225
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.33 E-value=1.2e-06 Score=73.96 Aligned_cols=54 Identities=26% Similarity=0.369 Sum_probs=36.3
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceee--EEEEEeC---CcEEEEecCCc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFG---KDLEFLDSPGI 272 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~---~~~~liDTPGi 272 (323)
++|+++|.+|||||||+|+|.+.... ....|.++.+ ...+... -.+.++||||.
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 59 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFV-SKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGH 59 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCccceeEEEEEEEECCeEEEEEEEECCcc
Confidence 47999999999999999999976532 2233333322 2223332 25779999996
No 226
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.33 E-value=1.9e-06 Score=75.22 Aligned_cols=98 Identities=11% Similarity=0.034 Sum_probs=62.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----CCCCeEEEEeccCCccHHhHHHHHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l-----~~k~~iiVlNK~DLl~~~~~~~~~~~~ 172 (323)
+-+.||+ .++.......++.+|++|+|+|+.++.+.. ...+..++ .+.|+++|.||+|+.......+..+.+
T Consensus 65 i~D~~Gq-~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l 143 (181)
T PLN00223 65 VWDVGGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKL 143 (181)
T ss_pred EEECCCC-HHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHh
Confidence 3456887 555555566789999999999998653221 12233333 257999999999986543333333322
Q ss_pred HhhC-----ceEEEecCcCCCcchhhhHHHH
Q 020668 173 AKQG-----TKVIFSNGQLGMGTMKLSRLAK 198 (323)
Q Consensus 173 ~~~g-----~~vi~iSa~~g~gi~~L~~~l~ 198 (323)
.-.. ..++.+||++|+|+.++.+.|.
T Consensus 144 ~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~ 174 (181)
T PLN00223 144 GLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
T ss_pred CccccCCCceEEEeccCCCCCCHHHHHHHHH
Confidence 1111 1345689999999988877654
No 227
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.32 E-value=1.7e-06 Score=75.64 Aligned_cols=98 Identities=13% Similarity=0.025 Sum_probs=63.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC--CcHHHHHHh-----CCCCeEEEEeccCCcc---HHhHHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWL-----GNRKRILVLNREDMIS---MADRNAWA 169 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~--~~~~i~~~l-----~~k~~iiVlNK~DLl~---~~~~~~~~ 169 (323)
+-+.||+ .+........+..+|.+++|+|+.++... ....+.+++ .++|+++|+||+|+.. .++..+..
T Consensus 65 ~~D~~G~-~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l 143 (184)
T smart00178 65 TFDLGGH-QQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYAL 143 (184)
T ss_pred EEECCCC-HHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHc
Confidence 4467887 44555556778999999999999865321 222333333 3689999999999853 33333222
Q ss_pred HHHHh---------hCceEEEecCcCCCcchhhhHHHH
Q 020668 170 TYFAK---------QGTKVIFSNGQLGMGTMKLSRLAK 198 (323)
Q Consensus 170 ~~~~~---------~g~~vi~iSa~~g~gi~~L~~~l~ 198 (323)
..... ....++++||++|.|++++.+.|.
T Consensus 144 ~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~ 181 (184)
T smart00178 144 GLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLS 181 (184)
T ss_pred CCCcccccccccCCceeEEEEeecccCCChHHHHHHHH
Confidence 11110 113589999999999998877754
No 228
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.32 E-value=2.7e-06 Score=73.39 Aligned_cols=102 Identities=15% Similarity=0.003 Sum_probs=66.0
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHhC-----CCCeEEEEeccCCccHHhH---HH-H
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNREDMISMADR---NA-W 168 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l~-----~k~~iiVlNK~DLl~~~~~---~~-~ 168 (323)
+-++||. .++.......++.+|++++|+|+.+..+.. ...+..++. ..|+++|.||+|+.+..+. .+ .
T Consensus 53 i~Dt~G~-~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~ 131 (170)
T cd04108 53 LWDTAGQ-ERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDA 131 (170)
T ss_pred EEeCCCh-HHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHH
Confidence 4456776 555555567789999999999997643221 111222222 2358999999999754321 11 1
Q ss_pred HHHHHhhCceEEEecCcCCCcchhhhHHHHHhhh
Q 020668 169 ATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (323)
Q Consensus 169 ~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (323)
.....+.+..++.+||++|.|++++.+.+.++..
T Consensus 132 ~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~ 165 (170)
T cd04108 132 IKLAAEMQAEYWSVSALSGENVREFFFRVAALTF 165 (170)
T ss_pred HHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 1223344567899999999999999888776654
No 229
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.32 E-value=1.8e-06 Score=85.29 Aligned_cols=101 Identities=20% Similarity=0.212 Sum_probs=65.7
Q ss_pred cccccchHH------HHHHHHHHHHhhcCeEEEEEeCCCCCCCC----cHHHHHHh-------CCCCeEEEEeccCCccH
Q 020668 100 VQWYPGHIA------KTEKELKDQLKLMDVVIEVRDARIPLSTT----HPLMDQWL-------GNRKRILVLNREDMISM 162 (323)
Q Consensus 100 i~~~PGh~~------k~~~~l~~~i~~aDlIl~VvDar~~~~~~----~~~i~~~l-------~~k~~iiVlNK~DLl~~ 162 (323)
+.+.||... .......+.++++|++|+|+|+....... ...+.+.+ .++|.++|+||+|+...
T Consensus 210 laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~ 289 (424)
T PRK12297 210 MADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA 289 (424)
T ss_pred EEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC
Confidence 677888632 23345566788999999999986431110 11122222 36899999999998433
Q ss_pred HhHHHHHHHHHhhCceEEEecCcCCCcchhhhHHHHHhhh
Q 020668 163 ADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (323)
Q Consensus 163 ~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (323)
.+ .+.++.+.++..++++||+++.|+++|.+.+.++..
T Consensus 290 ~e--~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l~ 327 (424)
T PRK12297 290 EE--NLEEFKEKLGPKVFPISALTGQGLDELLYAVAELLE 327 (424)
T ss_pred HH--HHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 21 222223334467899999999999999888766543
No 230
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.32 E-value=5.8e-07 Score=76.29 Aligned_cols=55 Identities=20% Similarity=0.200 Sum_probs=36.1
Q ss_pred EeeeecCCCCChhhHHHhhhcCccc---cccCCCCceee--EEEEEe-CCcEEEEecCCcc
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMC---PAAPRPGVTRV--LKWVRF-GKDLEFLDSPGII 273 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~---~v~~~pgtT~~--~~~~~~-~~~~~liDTPGi~ 273 (323)
+|+++|.+|+|||||+|+|.+.... .......+|.. ...+.. +..+.++||||..
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~ 61 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQE 61 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCCh
Confidence 4799999999999999999864321 11112233433 223333 3568899999974
No 231
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.32 E-value=2.8e-06 Score=71.68 Aligned_cols=98 Identities=13% Similarity=0.037 Sum_probs=67.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHH--h--CCCCeEEEEeccCCccHHh--HHHHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQW--L--GNRKRILVLNREDMISMAD--RNAWATY 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~--l--~~k~~iiVlNK~DLl~~~~--~~~~~~~ 171 (323)
+-++||| .++.......++.+|.+++|+|+.++.+..+ ..+... + .+.|+++|.||+|+....+ ..+....
T Consensus 53 l~D~~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~ 131 (161)
T cd04113 53 IWDTAGQ-ERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRF 131 (161)
T ss_pred EEECcch-HHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHH
Confidence 4568898 4566666677899999999999977543322 111111 1 2678999999999975432 2233334
Q ss_pred HHhhCceEEEecCcCCCcchhhhHHHH
Q 020668 172 FAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (323)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (323)
....+..++.+|++++.|+.++.+.+.
T Consensus 132 ~~~~~~~~~~~Sa~~~~~i~~~~~~~~ 158 (161)
T cd04113 132 AQENGLLFLETSALTGENVEEAFLKCA 158 (161)
T ss_pred HHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 445567899999999999998876643
No 232
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.32 E-value=1.1e-06 Score=90.59 Aligned_cols=51 Identities=43% Similarity=0.588 Sum_probs=41.8
Q ss_pred cCCCCChhhHHHhhhcCccccccCCCCceeeEEEE--E-eCCcEEEEecCCccCC
Q 020668 224 GYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--R-FGKDLEFLDSPGIIPM 275 (323)
Q Consensus 224 G~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~--~-~~~~~~liDTPGi~~~ 275 (323)
|.||||||||+|+|.+.+ ..+++.||+|.+.... . .+.++.++||||....
T Consensus 1 G~pNvGKSSL~N~Ltg~~-~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~ 54 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN-QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSL 54 (591)
T ss_pred CCCCCCHHHHHHHHhCCC-CeecCCCCeEEEEEEEEEEECCeEEEEEECCCcccc
Confidence 899999999999999875 4789999999986432 2 2457899999999753
No 233
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.32 E-value=2.5e-06 Score=72.13 Aligned_cols=99 Identities=9% Similarity=-0.072 Sum_probs=64.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHhC--CCCeEEEEeccCCccHHh--HHHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLG--NRKRILVLNREDMISMAD--RNAWAT 170 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l~--~k~~iiVlNK~DLl~~~~--~~~~~~ 170 (323)
+-+.||+ .++.......+..+|.+++|+|+.++.+... ..+.+... +.|+++|.||+|+.+... ......
T Consensus 52 i~Dt~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~ 130 (164)
T smart00173 52 ILDTAGQ-EEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKE 130 (164)
T ss_pred EEECCCc-ccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHH
Confidence 3467887 4455555567889999999999876543211 11111111 579999999999975321 112222
Q ss_pred HHHhhCceEEEecCcCCCcchhhhHHHHH
Q 020668 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
.....+..++.+||++|.|++++.+.+.+
T Consensus 131 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 131 LARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred HHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 33345578899999999999998776543
No 234
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.31 E-value=1.2e-06 Score=73.73 Aligned_cols=55 Identities=22% Similarity=0.333 Sum_probs=37.0
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceee--EEEEEeCC---cEEEEecCCcc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~---~~~liDTPGi~ 273 (323)
+||+++|.+|+|||||+|++.+... .....+.++.+ ...+..+. .+.++||||-.
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 60 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKF-SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChH
Confidence 3799999999999999999997653 22233333322 22333332 46799999953
No 235
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.31 E-value=2e-06 Score=74.85 Aligned_cols=99 Identities=16% Similarity=0.130 Sum_probs=63.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC--CcHHHHHHh-----CCCCeEEEEeccCCccHHhHHHHHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~--~~~~i~~~l-----~~k~~iiVlNK~DLl~~~~~~~~~~~~ 172 (323)
+-+.||+ .+..+.....+..+|.+++|+|+.+..+. ....+...+ .+.|+++++||+|+.......+..+++
T Consensus 67 l~D~~G~-~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~ 145 (190)
T cd00879 67 TFDLGGH-EQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQAL 145 (190)
T ss_pred EEECCCC-HHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHh
Confidence 4457887 34444445667999999999998754221 112233333 257999999999986432222222222
Q ss_pred Hh----------------hCceEEEecCcCCCcchhhhHHHHH
Q 020668 173 AK----------------QGTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 173 ~~----------------~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
.. ....++.+||++|.|++++.+.+.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~ 188 (190)
T cd00879 146 GLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQ 188 (190)
T ss_pred CcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHh
Confidence 11 1135789999999999998877654
No 236
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.31 E-value=4.5e-06 Score=85.77 Aligned_cols=101 Identities=18% Similarity=0.107 Sum_probs=69.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCeEEEEeccCCccHH--------------
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMA-------------- 163 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~iiVlNK~DLl~~~-------------- 163 (323)
+-++||| ..+.......++.+|++++|+|+.++......+...++. +.|+++++||+|+.+..
T Consensus 73 ~iDTpG~-e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak 151 (590)
T TIGR00491 73 FIDTPGH-EAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESFSK 151 (590)
T ss_pred EEECCCc-HhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHHHh
Confidence 4568999 556666667789999999999999876554444444443 78999999999997421
Q ss_pred h---H-HHH-------HHHHHhh-------------C--ceEEEecCcCCCcchhhhHHHHHhh
Q 020668 164 D---R-NAW-------ATYFAKQ-------------G--TKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 164 ~---~-~~~-------~~~~~~~-------------g--~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
+ . ..+ ...+.+. + ..++++||++|+|+++|.+.+..+.
T Consensus 152 ~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 152 QEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 0 0 001 0011111 1 4689999999999999988776543
No 237
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.31 E-value=4.7e-07 Score=77.47 Aligned_cols=47 Identities=28% Similarity=0.361 Sum_probs=32.7
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEeCCcEEEEecCCccC
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIP 274 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~~~liDTPGi~~ 274 (323)
+|+++|.+|||||||+|+|.+.... ...|....+. .. .++||||...
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~-----~~~~~~v~~~--~~--~~iDtpG~~~ 49 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL-----ARKTQAVEFN--DK--GDIDTPGEYF 49 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc-----CccceEEEEC--CC--CcccCCcccc
Confidence 5899999999999999999976421 1233333321 11 2699999853
No 238
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.31 E-value=2.4e-06 Score=75.57 Aligned_cols=98 Identities=14% Similarity=0.113 Sum_probs=67.5
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-------CCCCeEEEEeccCCccHHh--HHHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------GNRKRILVLNREDMISMAD--RNAWAT 170 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l-------~~k~~iiVlNK~DLl~~~~--~~~~~~ 170 (323)
+-++||+ .++.......+..+|.+++|+|+.++.+.. .+..++ ...|+++|.||+|+.+... ......
T Consensus 59 l~D~~G~-~~~~~~~~~~~~~a~~iilv~D~~~~~s~~--~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~ 135 (199)
T cd04110 59 IWDTAGQ-ERFRTITSTYYRGTHGVIVVYDVTNGESFV--NVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYK 135 (199)
T ss_pred EEeCCCc-hhHHHHHHHHhCCCcEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHH
Confidence 4468887 445555567788999999999997654322 122222 2578999999999975432 122233
Q ss_pred HHHhhCceEEEecCcCCCcchhhhHHHHHh
Q 020668 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
+....+..++.+|+++|.|++++.+.+...
T Consensus 136 ~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~ 165 (199)
T cd04110 136 FAGQMGISLFETSAKENINVEEMFNCITEL 165 (199)
T ss_pred HHHHcCCEEEEEECCCCcCHHHHHHHHHHH
Confidence 334456789999999999999988776554
No 239
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.31 E-value=1.5e-06 Score=74.58 Aligned_cols=99 Identities=13% Similarity=-0.038 Sum_probs=63.3
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhCCCCeEEEEeccCCccHHhHHHHHHHHHh
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLGNRKRILVLNREDMISMADRNAWATYFAK 174 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l~~k~~iiVlNK~DLl~~~~~~~~~~~~~~ 174 (323)
+-++||+ .++..........+|++|+|+|..++.+..+. .+.....+.|+++|.||+|+.......+..++...
T Consensus 53 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~ 131 (166)
T cd00877 53 VWDTAGQ-EKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRK 131 (166)
T ss_pred EEECCCC-hhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHH
Confidence 4456776 33333334556789999999998765433221 12122226899999999999743211122223333
Q ss_pred hCceEEEecCcCCCcchhhhHHHHH
Q 020668 175 QGTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 175 ~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
.+..++.+||++|.|++++.+.+.+
T Consensus 132 ~~~~~~e~Sa~~~~~v~~~f~~l~~ 156 (166)
T cd00877 132 KNLQYYEISAKSNYNFEKPFLWLAR 156 (166)
T ss_pred cCCEEEEEeCCCCCChHHHHHHHHH
Confidence 4567999999999999998877653
No 240
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.31 E-value=1.1e-06 Score=85.11 Aligned_cols=61 Identities=23% Similarity=0.206 Sum_probs=38.5
Q ss_pred cceEeeeecCCCCChhhHHHhhhcC-----ccccccCCCCceeeEEEEEe--CCcEEEEecCCccCCCC
Q 020668 216 RAVRAGIVGYPNVGKSSLINRLLKR-----RMCPAAPRPGVTRVLKWVRF--GKDLEFLDSPGIIPMRI 277 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~-----~~~~v~~~pgtT~~~~~~~~--~~~~~liDTPGi~~~~~ 277 (323)
.+++|+|+|-+|+|||||||+|.|- ..+.++.. .||.....+.- ..++.++|.||+-.+++
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~-etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f 101 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVV-ETTMEPTPYPHPKFPNVTLWDLPGIGTPNF 101 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSH-SCCTS-EEEE-SS-TTEEEEEE--GGGSS-
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCC-cCCCCCeeCCCCCCCCCeEEeCCCCCCCCC
Confidence 3688999999999999999999862 23333332 46666555443 35799999999976554
No 241
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.30 E-value=9e-07 Score=74.51 Aligned_cols=53 Identities=21% Similarity=0.324 Sum_probs=37.8
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe-CCcEEEEecCCcc
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (323)
||+++|.+|||||||+|++.+.......+..|.+... +.. +..+.++||||..
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~i~D~~G~~ 54 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVET--VEYKNVSFTVWDVGGQD 54 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEE--EEECCEEEEEEECCCCh
Confidence 4899999999999999999987633333334444332 222 4468899999975
No 242
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.30 E-value=2.7e-06 Score=75.28 Aligned_cols=100 Identities=13% Similarity=0.060 Sum_probs=66.6
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh-----CCCCeEEEEeccCCccH--HhHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL-----GNRKRILVLNREDMISM--ADRNA 167 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l-----~~k~~iiVlNK~DLl~~--~~~~~ 167 (323)
+-++||+ .++.......+..+|++|+|+|..++.+..+. .+...+ .+.|+++|.||+|+.+. ....+
T Consensus 54 l~Dt~G~-~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~ 132 (201)
T cd04107 54 LWDIAGQ-ERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQ 132 (201)
T ss_pred EEECCCc-hhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHH
Confidence 3356887 45555556778999999999998765432221 122221 25689999999999732 12223
Q ss_pred HHHHHHhhC-ceEEEecCcCCCcchhhhHHHHHh
Q 020668 168 WATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 168 ~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
..++.+..+ ..++.+||++|.|++++.+.+.+.
T Consensus 133 ~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~ 166 (201)
T cd04107 133 MDQFCKENGFIGWFETSAKEGINIEEAMRFLVKN 166 (201)
T ss_pred HHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHH
Confidence 333444455 578999999999999987776553
No 243
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.30 E-value=3.4e-06 Score=71.87 Aligned_cols=95 Identities=13% Similarity=0.109 Sum_probs=64.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--------CCCCeEEEEeccCCccHHh--HHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMISMAD--RNAWA 169 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--------~~k~~iiVlNK~DLl~~~~--~~~~~ 169 (323)
+-++||+ .++.......++.+|.+|+|+|..++.+.. .+..++ .+.|+++|.||+|+....+ .++..
T Consensus 55 i~Dt~G~-~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~ 131 (166)
T cd04122 55 IWDTAGQ-ERFRAVTRSYYRGAAGALMVYDITRRSTYN--HLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAK 131 (166)
T ss_pred EEECCCc-HHHHHHHHHHhcCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHH
Confidence 3357887 456666667789999999999998654322 122222 1468999999999965432 12222
Q ss_pred HHHHhhCceEEEecCcCCCcchhhhHHH
Q 020668 170 TYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (323)
Q Consensus 170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~l 197 (323)
+..++.+..++.+||++|.|++++...+
T Consensus 132 ~~~~~~~~~~~e~Sa~~~~~i~e~f~~l 159 (166)
T cd04122 132 QFADENGLLFLECSAKTGENVEDAFLET 159 (166)
T ss_pred HHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 3334456788999999999998875543
No 244
>PRK04213 GTP-binding protein; Provisional
Probab=98.30 E-value=6.1e-06 Score=72.66 Aligned_cols=83 Identities=14% Similarity=0.077 Sum_probs=52.6
Q ss_pred HHhhcCeEEEEEeCCCCCCC-----------CcHHHHHHh--CCCCeEEEEeccCCccHH--hHHHHHHHHHhh------
Q 020668 117 QLKLMDVVIEVRDARIPLST-----------THPLMDQWL--GNRKRILVLNREDMISMA--DRNAWATYFAKQ------ 175 (323)
Q Consensus 117 ~i~~aDlIl~VvDar~~~~~-----------~~~~i~~~l--~~k~~iiVlNK~DLl~~~--~~~~~~~~~~~~------ 175 (323)
.+..+|++++|+|+...... .+..+...+ .++|+++|+||+|+.+.. ...++.+.+.-.
T Consensus 87 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 166 (201)
T PRK04213 87 NADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPPWRQW 166 (201)
T ss_pred hhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcHHHHHHHHHHHhcCCcccccc
Confidence 34567899999998653211 112233433 278999999999997644 222232222100
Q ss_pred CceEEEecCcCCCcchhhhHHHHHh
Q 020668 176 GTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 176 g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
+..++++||++| |++++.+.+...
T Consensus 167 ~~~~~~~SA~~g-gi~~l~~~l~~~ 190 (201)
T PRK04213 167 QDIIAPISAKKG-GIEELKEAIRKR 190 (201)
T ss_pred CCcEEEEecccC-CHHHHHHHHHHh
Confidence 124799999999 999988876554
No 245
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.30 E-value=1.7e-06 Score=73.61 Aligned_cols=56 Identities=21% Similarity=0.353 Sum_probs=36.2
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCcccccc-CCCCceeeEEEEEeCC---cEEEEecCCc
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAA-PRPGVTRVLKWVRFGK---DLEFLDSPGI 272 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~-~~pgtT~~~~~~~~~~---~~~liDTPGi 272 (323)
..+|+++|.+|+|||||+|++......... ...|+......+..+. .+.++||||-
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~ 62 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQ 62 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCCh
Confidence 367999999999999999999864422211 1122222233344443 5789999995
No 246
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.29 E-value=9.6e-07 Score=74.33 Aligned_cols=54 Identities=22% Similarity=0.255 Sum_probs=36.5
Q ss_pred EeeeecCCCCChhhHHHhhhcCcc--ccccCCCCceeeEEEEEeCCcEEEEecCCcc
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRM--CPAAPRPGVTRVLKWVRFGKDLEFLDSPGII 273 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~--~~v~~~pgtT~~~~~~~~~~~~~liDTPGi~ 273 (323)
+|+++|.+|||||||+|+|.+... ....+..|.+... ....+..+.++||||..
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~-~~~~~~~~~l~Dt~G~~ 56 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES-FEKGNLSFTAFDMSGQG 56 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE-EEECCEEEEEEECCCCH
Confidence 478999999999999999997532 1233444543321 11223457899999975
No 247
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.29 E-value=1.7e-06 Score=73.85 Aligned_cols=56 Identities=18% Similarity=0.275 Sum_probs=37.5
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCC--ceeeEEEEEeCC---cEEEEecCCcc
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG--VTRVLKWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pg--tT~~~~~~~~~~---~~~liDTPGi~ 273 (323)
.+||+++|.+|||||||+|++.+... .....|. ++.....+..+. .+.++||||..
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~ 63 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSF-NPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcC-CcccccCccceEEEEEEEECCEEEEEEEEeCCchH
Confidence 46899999999999999999997542 2222333 322233333332 46799999964
No 248
>PRK00007 elongation factor G; Reviewed
Probab=98.29 E-value=4.4e-06 Score=87.69 Aligned_cols=116 Identities=13% Similarity=0.019 Sum_probs=83.9
Q ss_pred CCCcchhhHhhhcccccCcceeeeecccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC-
Q 020668 70 SNGSIEAYEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG- 146 (323)
Q Consensus 70 ~~~~~~~~~e~e~~~~~~~~~~~~~~~l~--~i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~- 146 (323)
..+.|-...|++.+.+++.....|...-. .+-++|||. ++..++...+..+|++|+|+|+..+....+..+..++.
T Consensus 47 ~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~-~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~ 125 (693)
T PRK00007 47 AATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV-DFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADK 125 (693)
T ss_pred cccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH-HHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHH
Confidence 45778888899999999887666654433 377899995 46667889999999999999999888777767666654
Q ss_pred -CCCeEEEEeccCCccHHhHHHHHHHHHh-hC----ceEEEecCcCC
Q 020668 147 -NRKRILVLNREDMISMADRNAWATYFAK-QG----TKVIFSNGQLG 187 (323)
Q Consensus 147 -~k~~iiVlNK~DLl~~~~~~~~~~~~~~-~g----~~vi~iSa~~g 187 (323)
++|+++++||+|+.+.+ .....+.+++ ++ ...+++|+..+
T Consensus 126 ~~~p~iv~vNK~D~~~~~-~~~~~~~i~~~l~~~~~~~~ipisa~~~ 171 (693)
T PRK00007 126 YKVPRIAFVNKMDRTGAD-FYRVVEQIKDRLGANPVPIQLPIGAEDD 171 (693)
T ss_pred cCCCEEEEEECCCCCCCC-HHHHHHHHHHHhCCCeeeEEecCccCCc
Confidence 78999999999998644 2223333332 22 23466776555
No 249
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.28 E-value=1.6e-06 Score=73.29 Aligned_cols=55 Identities=24% Similarity=0.411 Sum_probs=35.8
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceee--EEEEEeCC---cEEEEecCCcc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~---~~~liDTPGi~ 273 (323)
+||+++|.+|||||||+|+|++... .....+..+.+ ...+.++. .+.++||||..
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~ 60 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKF-KEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQE 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeEEEEEEEECCEEEEEEEEECcchH
Confidence 3699999999999999999997543 22222222222 22233322 46799999963
No 250
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.28 E-value=1.8e-06 Score=72.78 Aligned_cols=54 Identities=22% Similarity=0.233 Sum_probs=37.3
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCcc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (323)
++|+++|.+|||||||+|++++... +...+.|+.+. .....+. .+.++||||..
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 61 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQE 61 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceEEEEEEECCEEEEEEEEECCCCc
Confidence 6899999999999999999997542 34444444432 1222332 46789999964
No 251
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.28 E-value=1.4e-06 Score=76.10 Aligned_cols=55 Identities=27% Similarity=0.448 Sum_probs=36.6
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceee---EEEEEeCC---cEEEEecCCcc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV---LKWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~---~~~~~~~~---~~~liDTPGi~ 273 (323)
+||+++|.+|||||||+|++..... ..+....|+.. ...+.++. .+.++||||..
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~ 61 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRF-LVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCc-CCcCcccceeeEEEEEEEEECCEEEEEEEEECCCch
Confidence 3799999999999999999997543 33333333322 22344433 25689999974
No 252
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.28 E-value=4e-06 Score=73.48 Aligned_cols=99 Identities=10% Similarity=0.011 Sum_probs=64.7
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh--------CCCCeEEEEeccCCccHHh--HHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL--------GNRKRILVLNREDMISMAD--RNAW 168 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~-~~i~~~l--------~~k~~iiVlNK~DLl~~~~--~~~~ 168 (323)
+-++||+ .++.......+..+|++|+|+|..+..+..+ ..+...+ .+.|+++|.||+|+....+ ....
T Consensus 51 i~Dt~G~-~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~ 129 (190)
T cd04144 51 VLDTAGQ-EEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEG 129 (190)
T ss_pred EEECCCc-hhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHH
Confidence 3457887 4555555567899999999999876543221 1111111 2468999999999964322 1112
Q ss_pred HHHHHhhCceEEEecCcCCCcchhhhHHHHH
Q 020668 169 ATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 169 ~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
.+.....+..++.+||++|.|++++.+.+.+
T Consensus 130 ~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~ 160 (190)
T cd04144 130 AALARRLGCEFIEASAKTNVNVERAFYTLVR 160 (190)
T ss_pred HHHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence 2223345677899999999999998776654
No 253
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.28 E-value=9.7e-07 Score=79.87 Aligned_cols=60 Identities=27% Similarity=0.386 Sum_probs=39.9
Q ss_pred ccceEeeeecCCCCChhhHHHhhhcCccccccC-------CCCceeeE---EEEEe---CCcEEEEecCCccC
Q 020668 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP-------RPGVTRVL---KWVRF---GKDLEFLDSPGIIP 274 (323)
Q Consensus 215 ~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~-------~pgtT~~~---~~~~~---~~~~~liDTPGi~~ 274 (323)
+...+|++||.+|.|||||+|.|++.+....+. .|-||--- ..+.- .-++.++|||||-+
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGD 116 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGD 116 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCccc
Confidence 456789999999999999999999866544322 33333210 11111 12577999999964
No 254
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.28 E-value=4e-06 Score=70.17 Aligned_cols=99 Identities=18% Similarity=0.064 Sum_probs=64.7
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhC-CCCeEEEEeccCCccHHh--HHHHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG-NRKRILVLNREDMISMAD--RNAWATY 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l~-~k~~iiVlNK~DLl~~~~--~~~~~~~ 171 (323)
+-+.||+ ..+.......+..+|.+++|+|..++.+.... .+..... +.|+++|+||+|+..... .++..++
T Consensus 53 ~~D~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~ 131 (162)
T cd04123 53 IWDTAGQ-ERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEY 131 (162)
T ss_pred EEECCch-HHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHH
Confidence 3356776 33444444557899999999998765432111 1222222 578999999999975432 2233334
Q ss_pred HHhhCceEEEecCcCCCcchhhhHHHHH
Q 020668 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
....+..++++|++++.|++++.+.+..
T Consensus 132 ~~~~~~~~~~~s~~~~~gi~~~~~~l~~ 159 (162)
T cd04123 132 AKSVGAKHFETSAKTGKGIEELFLSLAK 159 (162)
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 4455678899999999999998877643
No 255
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.28 E-value=8.9e-07 Score=86.29 Aligned_cols=59 Identities=20% Similarity=0.394 Sum_probs=47.2
Q ss_pred cceEeeeecCCCCChhhHHHhhhcC----ccc-----------cccCCCC---ceeeEEE-------EEeC----CcEEE
Q 020668 216 RAVRAGIVGYPNVGKSSLINRLLKR----RMC-----------PAAPRPG---VTRVLKW-------VRFG----KDLEF 266 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~----~~~-----------~v~~~pg---tT~~~~~-------~~~~----~~~~l 266 (323)
..+.|+++|..|+|||||||++.+. +.. .+++.+| ||++..+ +... ..+.|
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 3578999999999999999999987 444 5678899 8888544 2233 56899
Q ss_pred EecCCccC
Q 020668 267 LDSPGIIP 274 (323)
Q Consensus 267 iDTPGi~~ 274 (323)
+||+|+..
T Consensus 96 IDcvG~~v 103 (492)
T TIGR02836 96 VDCVGYTV 103 (492)
T ss_pred EECCCccc
Confidence 99999974
No 256
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.27 E-value=1.9e-06 Score=72.23 Aligned_cols=54 Identities=26% Similarity=0.275 Sum_probs=35.6
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCcc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (323)
+||+++|.+|||||||+|++.+... ....+.|+.+. ..+.++. .+.++||||--
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 60 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 60 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--cCCcCCcchheEEEEEEECCEEEEEEEEECCCCc
Confidence 4799999999999999999997643 22223333322 1223332 25689999964
No 257
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.27 E-value=1.1e-06 Score=78.17 Aligned_cols=57 Identities=25% Similarity=0.415 Sum_probs=41.3
Q ss_pred ceEeeeecCCCCChhhHHHhhhcC------ccc---------cccCCCCceeeEEEEEe---CCcEEEEecCCcc
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKR------RMC---------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~------~~~---------~v~~~pgtT~~~~~~~~---~~~~~liDTPGi~ 273 (323)
.++|+++|.+|+|||||+++|+.. ... ......|+|.+.....+ +..+.++||||+.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~ 76 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA 76 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH
Confidence 367999999999999999999853 110 01124688888655444 4568899999974
No 258
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.27 E-value=4.2e-06 Score=70.93 Aligned_cols=96 Identities=15% Similarity=0.112 Sum_probs=64.6
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-------C-CCCeEEEEeccCCccHHh--HHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------G-NRKRILVLNREDMISMAD--RNAWA 169 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l-------~-~k~~iiVlNK~DLl~~~~--~~~~~ 169 (323)
+-+.||+ .++.......++.+|.+|+|+|+.++.+.. .+..++ . +.|+++|.||+|+....+ .++..
T Consensus 56 l~D~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~ 132 (165)
T cd01868 56 IWDTAGQ-ERYRAITSAYYRGAVGALLVYDITKKQTFE--NVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAK 132 (165)
T ss_pred EEeCCCh-HHHHHHHHHHHCCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHH
Confidence 4457776 455555567789999999999998654322 222222 1 478999999999875322 12222
Q ss_pred HHHHhhCceEEEecCcCCCcchhhhHHHH
Q 020668 170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (323)
Q Consensus 170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (323)
.+....+..++.+||++|.|++++.+.+.
T Consensus 133 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 161 (165)
T cd01868 133 AFAEKNGLSFIETSALDGTNVEEAFKQLL 161 (165)
T ss_pred HHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 33334567789999999999998877654
No 259
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.27 E-value=7.3e-06 Score=73.38 Aligned_cols=90 Identities=17% Similarity=0.105 Sum_probs=62.8
Q ss_pred CCCcchhhHhhhcccccCcceeeeec-----ccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHH
Q 020668 70 SNGSIEAYEEECDWADLDADLYYWTK-----SLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMD 142 (323)
Q Consensus 70 ~~~~~~~~~e~e~~~~~~~~~~~~~~-----~l~--~i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~ 142 (323)
+.|.+....|++.+.++......+.- ... .+-+.||| .++...+...+..+|++++|+|+..+.......+.
T Consensus 38 ~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~-~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~ 116 (213)
T cd04167 38 LRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH-VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLI 116 (213)
T ss_pred eeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC-cchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHH
Confidence 34556666778888877666554421 111 26678999 45677788889999999999999877654433333
Q ss_pred HHh--CCCCeEEEEeccCCc
Q 020668 143 QWL--GNRKRILVLNREDMI 160 (323)
Q Consensus 143 ~~l--~~k~~iiVlNK~DLl 160 (323)
+.+ .++|+++|+||+|++
T Consensus 117 ~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 117 RHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred HHHHHcCCCEEEEEECcccC
Confidence 332 368999999999986
No 260
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.26 E-value=4e-06 Score=75.12 Aligned_cols=100 Identities=18% Similarity=0.096 Sum_probs=65.3
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhC----CCCeEEEEeccCCccHHh--HHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG----NRKRILVLNREDMISMAD--RNAW 168 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l~----~k~~iiVlNK~DLl~~~~--~~~~ 168 (323)
+-++||+ ..+.......+..+|++|+|+|..++.+..+. .+.+... +.|+++|.||+|+..... ..+.
T Consensus 54 i~Dt~G~-~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~ 132 (215)
T cd04109 54 VWDIGGQ-SIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKH 132 (215)
T ss_pred EEECCCc-HHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHH
Confidence 4456787 45555566778999999999998866433221 1222221 236889999999974321 1122
Q ss_pred HHHHHhhCceEEEecCcCCCcchhhhHHHHHh
Q 020668 169 ATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 169 ~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
.++.+..+..++.+||++|.|++++.+.+...
T Consensus 133 ~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~ 164 (215)
T cd04109 133 ARFAQANGMESCLVSAKTGDRVNLLFQQLAAE 164 (215)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 22333456678999999999999988776554
No 261
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.26 E-value=4.7e-06 Score=70.25 Aligned_cols=98 Identities=15% Similarity=0.017 Sum_probs=64.6
Q ss_pred ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHH-HHHh----CCCCeEEEEeccCCccHH--hHHHHHHHH
Q 020668 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLM-DQWL----GNRKRILVLNREDMISMA--DRNAWATYF 172 (323)
Q Consensus 101 ~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~-~~i-~~~l----~~k~~iiVlNK~DLl~~~--~~~~~~~~~ 172 (323)
-++||+ .++.......++.+|++++|+|+.++.+... ..+ ..+. ...|++++.||+|+.+.. .........
T Consensus 55 ~D~~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~ 133 (163)
T cd01860 55 WDTAGQ-ERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYA 133 (163)
T ss_pred EeCCch-HHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHH
Confidence 357887 4455555566788999999999986543211 111 1111 146799999999987432 222333344
Q ss_pred HhhCceEEEecCcCCCcchhhhHHHHH
Q 020668 173 AKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 173 ~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
...+..++.+|+++|.|+.++.+.+.+
T Consensus 134 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 134 DENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred HHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 455678999999999999988776543
No 262
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.26 E-value=1.5e-06 Score=76.02 Aligned_cols=55 Identities=20% Similarity=0.287 Sum_probs=37.9
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe-CCcEEEEecCCcc
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (323)
..+|+++|.+|||||||+|+|.+.....+.+..+.|. ..+.. +..+.++||||..
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~G~~ 72 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTS--EELAIGNIKFTTFDLGGHQ 72 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccce--EEEEECCEEEEEEECCCCH
Confidence 4679999999999999999999765433333223222 22222 3467899999974
No 263
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.26 E-value=1.6e-06 Score=73.63 Aligned_cols=55 Identities=18% Similarity=0.275 Sum_probs=37.6
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCcc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (323)
++|+++|.+|||||||+|++.+... .....|.++.+. ..+..+. .+.++||||..
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 62 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTY-TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 62 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 5799999999999999999997543 233344444332 2233332 47899999964
No 264
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.26 E-value=1.4e-06 Score=75.22 Aligned_cols=55 Identities=20% Similarity=0.315 Sum_probs=38.6
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe-CCcEEEEecCCcc
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (323)
..+|+++|.+|||||||+|+|.........+..|.+. ..+.. +..+.++||||..
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~D~~G~~ 70 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNV--EEIVYKNIRFLMWDIGGQE 70 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccce--EEEEECCeEEEEEECCCCH
Confidence 3579999999999999999998655433333334332 22333 4568899999974
No 265
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.26 E-value=3.6e-06 Score=70.88 Aligned_cols=97 Identities=10% Similarity=-0.115 Sum_probs=61.8
Q ss_pred ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-H----HHHHh--CCCCeEEEEeccCCccHHhH--HHHHHH
Q 020668 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L----MDQWL--GNRKRILVLNREDMISMADR--NAWATY 171 (323)
Q Consensus 101 ~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~-~----i~~~l--~~k~~iiVlNK~DLl~~~~~--~~~~~~ 171 (323)
-++||+ .++.......+..+|.+++|+|..++.+..+. . +.... .+.|+++|.||+|+.+.... ......
T Consensus 54 ~Dt~G~-~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 132 (163)
T cd04136 54 LDTAGT-EQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQAL 132 (163)
T ss_pred EECCCc-cccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHH
Confidence 356776 34444445567899999999998765432211 1 11111 25799999999998753221 111122
Q ss_pred HHhhCceEEEecCcCCCcchhhhHHHH
Q 020668 172 FAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (323)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (323)
.+..+.+++.+||++|.|+.++.+.+.
T Consensus 133 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04136 133 ARQWGCPFYETSAKSKINVDEVFADLV 159 (163)
T ss_pred HHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 233456789999999999998877654
No 266
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.26 E-value=8.8e-06 Score=68.07 Aligned_cols=82 Identities=17% Similarity=0.200 Sum_probs=59.2
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCeEEEEeccCCccHHhHHHHHHH----HH--hhCceEEEecCcCCCcc
Q 020668 119 KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATY----FA--KQGTKVIFSNGQLGMGT 190 (323)
Q Consensus 119 ~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~iiVlNK~DLl~~~~~~~~~~~----~~--~~g~~vi~iSa~~g~gi 190 (323)
+.++++++|+|...+.......+.+++. +.|+++|+||+|+.+..+....... ++ .....++++|++++.|+
T Consensus 80 ~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~ 159 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGI 159 (170)
T ss_pred hhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCH
Confidence 4678999999998776665566666665 5789999999999866543333222 22 11256889999999999
Q ss_pred hhhhHHHHHh
Q 020668 191 MKLSRLAKAL 200 (323)
Q Consensus 191 ~~L~~~l~~l 200 (323)
.++.+.+.++
T Consensus 160 ~~l~~~l~~~ 169 (170)
T cd01876 160 DELRALIEKW 169 (170)
T ss_pred HHHHHHHHHh
Confidence 9998887653
No 267
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.26 E-value=2.2e-06 Score=72.98 Aligned_cols=55 Identities=25% Similarity=0.248 Sum_probs=36.1
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCce--eeEEEEEeC---CcEEEEecCCcc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT--RVLKWVRFG---KDLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT--~~~~~~~~~---~~~~liDTPGi~ 273 (323)
++|+++|.+|||||||+|+|.+.+.. ....|.++ .....+... -.+.++||||..
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~ 61 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFT-SAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQE 61 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCChH
Confidence 57999999999999999999976532 22223222 222222222 247899999964
No 268
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.26 E-value=3.2e-06 Score=75.39 Aligned_cols=99 Identities=12% Similarity=-0.058 Sum_probs=65.5
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhCCCCeEEEEeccCCccHHhHHHHHHHHHh
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLGNRKRILVLNREDMISMADRNAWATYFAK 174 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l~~k~~iiVlNK~DLl~~~~~~~~~~~~~~ 174 (323)
+-+++|+ .++..........+|++|+|+|..+..+..+. ++.+...+.|+++|.||+|+.......+..+....
T Consensus 48 iwDt~G~-e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~ 126 (200)
T smart00176 48 VWDTAGQ-EKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFHRK 126 (200)
T ss_pred EEECCCc-hhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHHHHHHH
Confidence 3456777 45555555678999999999999865433221 12222236799999999998643211122233344
Q ss_pred hCceEEEecCcCCCcchhhhHHHHH
Q 020668 175 QGTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 175 ~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
.+..++.+||++|.|+.++.+.+..
T Consensus 127 ~~~~~~e~SAk~~~~v~~~F~~l~~ 151 (200)
T smart00176 127 KNLQYYDISAKSNYNFEKPFLWLAR 151 (200)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 5678999999999999988776543
No 269
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.25 E-value=4e-06 Score=74.02 Aligned_cols=100 Identities=9% Similarity=-0.068 Sum_probs=63.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh--CCCCeEEEEeccCCccH-Hh--HHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDMISM-AD--RNAWA 169 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l--~~k~~iiVlNK~DLl~~-~~--~~~~~ 169 (323)
+-+.||+ .++.......+..+|++|+|+|+.++.+..+. .+..+. .++|+++|+||+|+.+. .. .....
T Consensus 51 i~D~~G~-~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~ 129 (198)
T cd04147 51 ILDTSGS-YSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDAL 129 (198)
T ss_pred EEECCCc-hhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHH
Confidence 3456787 33433334567899999999998764332211 122222 25899999999999763 21 11112
Q ss_pred HHHH-hhCceEEEecCcCCCcchhhhHHHHHh
Q 020668 170 TYFA-KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 170 ~~~~-~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
+.+. ..+..++.+||++|.|++++.+.+.+.
T Consensus 130 ~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 161 (198)
T cd04147 130 STVELDWNCGFVETSAKDNENVLEVFKELLRQ 161 (198)
T ss_pred HHHHhhcCCcEEEecCCCCCCHHHHHHHHHHH
Confidence 2222 223568899999999999998876553
No 270
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.25 E-value=7.8e-06 Score=69.90 Aligned_cols=97 Identities=11% Similarity=0.073 Sum_probs=66.3
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--------CCCCeEEEEeccCCccHHh--HHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMISMAD--RNAWA 169 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--------~~k~~iiVlNK~DLl~~~~--~~~~~ 169 (323)
+-++||+ .++.......++.+|++|+|+|+.++.+.. .+..|+ .+.|+++|.||+|+.+... ..+..
T Consensus 57 i~Dt~G~-~~~~~~~~~~~~~~d~il~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~ 133 (168)
T cd01866 57 IWDTAGQ-ESFRSITRSYYRGAAGALLVYDITRRETFN--HLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGE 133 (168)
T ss_pred EEECCCc-HHHHHHHHHHhccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHH
Confidence 4456887 455555667789999999999988644322 233332 2578999999999974322 22223
Q ss_pred HHHHhhCceEEEecCcCCCcchhhhHHHHH
Q 020668 170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
.+..+.+..++.+|++.+.|++++...+.+
T Consensus 134 ~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~ 163 (168)
T cd01866 134 AFAKEHGLIFMETSAKTASNVEEAFINTAK 163 (168)
T ss_pred HHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 344455678999999999999987765543
No 271
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.24 E-value=4.6e-06 Score=70.26 Aligned_cols=98 Identities=14% Similarity=0.048 Sum_probs=64.6
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH-----HHHHh--CCCCeEEEEeccCCccHH-hHHHHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL--GNRKRILVLNREDMISMA-DRNAWATY 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~-----i~~~l--~~k~~iiVlNK~DLl~~~-~~~~~~~~ 171 (323)
+-++||+ .++.......++.+|.+++|+|..++.+..... +..+. .+.|+++|.||+|+.... ..++..+.
T Consensus 53 l~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~ 131 (161)
T cd01863 53 IWDTAGQ-ERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKF 131 (161)
T ss_pred EEECCCc-hhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHH
Confidence 3467886 445555566778999999999987654322111 11221 257899999999997332 22233333
Q ss_pred HHhhCceEEEecCcCCCcchhhhHHHH
Q 020668 172 FAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (323)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (323)
....+..++++|+++|.|++++.+.+.
T Consensus 132 ~~~~~~~~~~~Sa~~~~gi~~~~~~~~ 158 (161)
T cd01863 132 ARKHNMLFIETSAKTRDGVQQAFEELV 158 (161)
T ss_pred HHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence 344567899999999999998876653
No 272
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.24 E-value=5.9e-06 Score=69.01 Aligned_cols=98 Identities=12% Similarity=-0.004 Sum_probs=66.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHhC--CCCeEEEEeccCCccHHh--HHHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLG--NRKRILVLNREDMISMAD--RNAWAT 170 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l~--~k~~iiVlNK~DLl~~~~--~~~~~~ 170 (323)
+-++||+ .++.......++.+|++++|+|...+.+..+ ..+..... ..|+++|+||+|+.+... .+....
T Consensus 51 l~D~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~ 129 (160)
T cd00876 51 ILDTAGQ-EEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKA 129 (160)
T ss_pred EEECCCh-HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHH
Confidence 5578998 4455556677899999999999865432211 11222222 689999999999986322 122233
Q ss_pred HHHhhCceEEEecCcCCCcchhhhHHHH
Q 020668 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (323)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (323)
...+.+..++.+|++.+.|++++.+.+.
T Consensus 130 ~~~~~~~~~~~~S~~~~~~i~~l~~~l~ 157 (160)
T cd00876 130 LAKEWGCPFIETSAKDNINIDEVFKLLV 157 (160)
T ss_pred HHHHcCCcEEEeccCCCCCHHHHHHHHH
Confidence 3444556789999999999998877654
No 273
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.24 E-value=8.2e-07 Score=76.32 Aligned_cols=56 Identities=29% Similarity=0.369 Sum_probs=36.7
Q ss_pred EeeeecCCCCChhhHHHhhhcCcccc--------------ccCCCCceeeEEEEEe--------CCcEEEEecCCccC
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCP--------------AAPRPGVTRVLKWVRF--------GKDLEFLDSPGIIP 274 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~--------------v~~~pgtT~~~~~~~~--------~~~~~liDTPGi~~ 274 (323)
+|+++|.+|||||||+|+|++...+. .....|+|.....+.. ...+.++||||...
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 79 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD 79 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh
Confidence 58999999999999999998743211 1112356655332221 22467999999853
No 274
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.24 E-value=1.7e-06 Score=76.77 Aligned_cols=55 Identities=33% Similarity=0.586 Sum_probs=38.0
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCcc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (323)
++|+++|.+|||||||+|++.+... .....|.++.+. ..+..++ .+.++||||..
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f-~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~ 60 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEF-PEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCC-CcccCCccccccceeEEEECCEEEEEEEEeCCCcc
Confidence 3689999999999999999997543 223345554443 2333333 36699999975
No 275
>PTZ00369 Ras-like protein; Provisional
Probab=98.24 E-value=3.5e-06 Score=73.81 Aligned_cols=99 Identities=10% Similarity=-0.062 Sum_probs=64.7
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHhC--CCCeEEEEeccCCccHHh--HHHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLG--NRKRILVLNREDMISMAD--RNAWAT 170 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l~--~k~~iiVlNK~DLl~~~~--~~~~~~ 170 (323)
+-++||+ .++.......+..+|++++|+|..++.+..+ ..+.+... +.|+++|.||+|+.+... .....+
T Consensus 57 i~Dt~G~-~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~ 135 (189)
T PTZ00369 57 ILDTAGQ-EEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQE 135 (189)
T ss_pred EEeCCCC-ccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH
Confidence 3457887 4555555567889999999999876543211 11222222 568999999999864321 112222
Q ss_pred HHHhhCceEEEecCcCCCcchhhhHHHHH
Q 020668 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
.....+.+++.+||++|.|++++.+.+.+
T Consensus 136 ~~~~~~~~~~e~Sak~~~gi~~~~~~l~~ 164 (189)
T PTZ00369 136 LAKSFGIPFLETSAKQRVNVDEAFYELVR 164 (189)
T ss_pred HHHHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence 23344577899999999999988776543
No 276
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.24 E-value=4.4e-06 Score=72.53 Aligned_cols=101 Identities=13% Similarity=-0.024 Sum_probs=65.0
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH--HH-HH---hCCCCeEEEEeccCCccHH------hHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MD-QW---LGNRKRILVLNREDMISMA------DRNA 167 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~--i~-~~---l~~k~~iiVlNK~DLl~~~------~~~~ 167 (323)
+-++||+ .++.......++.+|++++|+|..+..+..+.. +. .. ..+.|+++|.||+|+.+.. ...+
T Consensus 53 i~Dt~G~-~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~ 131 (187)
T cd04132 53 LWDTAGQ-EEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQ 131 (187)
T ss_pred EEECCCc-hhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHH
Confidence 3456786 445444445678999999999987654332211 11 11 1367999999999986532 1112
Q ss_pred HHHHHHhhCc-eEEEecCcCCCcchhhhHHHHHhh
Q 020668 168 WATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 168 ~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
..+.....+. .++.+||++|.|++++.+.+....
T Consensus 132 ~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 166 (187)
T cd04132 132 AESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEA 166 (187)
T ss_pred HHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHH
Confidence 2223334555 789999999999999877665543
No 277
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.23 E-value=5.2e-06 Score=73.29 Aligned_cols=97 Identities=13% Similarity=0.021 Sum_probs=66.4
Q ss_pred cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhCCCCeEEEEeccCCccHHh--HHHHHHHHHh
Q 020668 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLGNRKRILVLNREDMISMAD--RNAWATYFAK 174 (323)
Q Consensus 102 ~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l~~k~~iiVlNK~DLl~~~~--~~~~~~~~~~ 174 (323)
+.+|+ .++..........+|.+|+|+|..++.+..+. ++.....+.|+++|.||+||..... .++..++.++
T Consensus 61 Dt~G~-~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~ 139 (189)
T cd04121 61 DTSGQ-GRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAER 139 (189)
T ss_pred eCCCc-HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHH
Confidence 45676 55666666777999999999999876543322 1222223679999999999864321 2222333445
Q ss_pred hCceEEEecCcCCCcchhhhHHHHH
Q 020668 175 QGTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 175 ~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
.+..++.+||++|.|++++.+.+.+
T Consensus 140 ~~~~~~e~SAk~g~~V~~~F~~l~~ 164 (189)
T cd04121 140 NGMTFFEVSPLCNFNITESFTELAR 164 (189)
T ss_pred cCCEEEEecCCCCCCHHHHHHHHHH
Confidence 6778999999999999988776654
No 278
>CHL00071 tufA elongation factor Tu
Probab=98.23 E-value=1.5e-06 Score=85.76 Aligned_cols=57 Identities=21% Similarity=0.348 Sum_probs=42.0
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCcccc---------------ccCCCCceeeEEEEEe---CCcEEEEecCCc
Q 020668 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP---------------AAPRPGVTRVLKWVRF---GKDLEFLDSPGI 272 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~---------------v~~~pgtT~~~~~~~~---~~~~~liDTPGi 272 (323)
..++|+++|.+|+|||||+|+|++..... ....+|+|++.....+ +..+.|+||||.
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh 85 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGH 85 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCCh
Confidence 46889999999999999999999642111 1123789988644333 346889999995
No 279
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.23 E-value=2.9e-06 Score=74.11 Aligned_cols=99 Identities=10% Similarity=0.032 Sum_probs=62.7
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCC--CCcHHHHHHhC-----CCCeEEEEeccCCccHHhHHHHHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS--TTHPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYF 172 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~--~~~~~i~~~l~-----~k~~iiVlNK~DLl~~~~~~~~~~~~ 172 (323)
+-++||+ .++.......++.+|++|+|+|+.+..+ .....+.+.+. +.|+++|.||.|+.......+..+.+
T Consensus 65 l~D~~G~-~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l 143 (182)
T PTZ00133 65 MWDVGGQ-DKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKL 143 (182)
T ss_pred EEECCCC-HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHh
Confidence 4557887 4555555667899999999999865432 11223333332 47899999999986532222222222
Q ss_pred H-----hhCceEEEecCcCCCcchhhhHHHHH
Q 020668 173 A-----KQGTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 173 ~-----~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
. .....++.+||++|.|++++.+.+.+
T Consensus 144 ~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~ 175 (182)
T PTZ00133 144 GLHSVRQRNWYIQGCCATTAQGLYEGLDWLSA 175 (182)
T ss_pred CCCcccCCcEEEEeeeCCCCCCHHHHHHHHHH
Confidence 1 11123456899999999998877654
No 280
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.23 E-value=1.2e-06 Score=77.04 Aligned_cols=55 Identities=24% Similarity=0.414 Sum_probs=37.3
Q ss_pred EeeeecCCCCChhhHHHhhhcCc-cccc--------------cCCCCceeeEEEEEe---CCcEEEEecCCcc
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRR-MCPA--------------APRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~-~~~v--------------~~~pgtT~~~~~~~~---~~~~~liDTPGi~ 273 (323)
+|+++|.+|||||||+|+|+... .+.. ....|+|.+.....+ ...+.++||||..
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~ 76 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHA 76 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcH
Confidence 68999999999999999998631 1111 112466655432222 4468899999974
No 281
>PRK12739 elongation factor G; Reviewed
Probab=98.23 E-value=8.2e-06 Score=85.66 Aligned_cols=92 Identities=16% Similarity=0.098 Sum_probs=74.5
Q ss_pred CCCcchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC-
Q 020668 70 SNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG- 146 (323)
Q Consensus 70 ~~~~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~- 146 (323)
..+.|-...|++.+++++..+..|...-.. +-++|||. ++..++...+..+|++|+|+|+..+....+..+..++.
T Consensus 45 ~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~-~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~ 123 (691)
T PRK12739 45 AATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV-DFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADK 123 (691)
T ss_pred ccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH-HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 457788888999999999987777655444 67899995 46668889999999999999999887666666666543
Q ss_pred -CCCeEEEEeccCCccH
Q 020668 147 -NRKRILVLNREDMISM 162 (323)
Q Consensus 147 -~k~~iiVlNK~DLl~~ 162 (323)
++|.++++||+|+...
T Consensus 124 ~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 124 YGVPRIVFVNKMDRIGA 140 (691)
T ss_pred cCCCEEEEEECCCCCCC
Confidence 7899999999999864
No 282
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.23 E-value=8.9e-06 Score=66.71 Aligned_cols=100 Identities=22% Similarity=0.177 Sum_probs=77.3
Q ss_pred cccccchH---HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCeEEEEeccCCccHHhHHHHHHHHHhhC
Q 020668 100 VQWYPGHI---AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQG 176 (323)
Q Consensus 100 i~~~PGh~---~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~iiVlNK~DLl~~~~~~~~~~~~~~~g 176 (323)
..+.||.- ...-..+.....++|++++|..+.++.+...+.+.... .+|+|-|++|+||.+..++....+++.+.|
T Consensus 41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f~~~~-~k~vIgvVTK~DLaed~dI~~~~~~L~eaG 119 (148)
T COG4917 41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFPPGFLDIG-VKKVIGVVTKADLAEDADISLVKRWLREAG 119 (148)
T ss_pred ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCCccccccc-ccceEEEEecccccchHhHHHHHHHHHHcC
Confidence 45677762 33344466677899999999999999888887765543 566999999999997776666666677777
Q ss_pred -ceEEEecCcCCCcchhhhHHHHHh
Q 020668 177 -TKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 177 -~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
.+++.+|+.++.|+++|.+.+..+
T Consensus 120 a~~IF~~s~~d~~gv~~l~~~L~~~ 144 (148)
T COG4917 120 AEPIFETSAVDNQGVEELVDYLASL 144 (148)
T ss_pred CcceEEEeccCcccHHHHHHHHHhh
Confidence 568889999999999998887654
No 283
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.23 E-value=4.4e-06 Score=71.15 Aligned_cols=100 Identities=12% Similarity=-0.026 Sum_probs=63.3
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HH----HHHHh----CCCCeEEEEeccCCccHHhH--HHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PL----MDQWL----GNRKRILVLNREDMISMADR--NAW 168 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~-~~----i~~~l----~~k~~iiVlNK~DLl~~~~~--~~~ 168 (323)
+-+.||+ .++..........+|.+|+|+|..++.+..+ .. +.+.. .+.|+++|.||+|+.+..+. .+.
T Consensus 53 i~Dt~G~-~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~ 131 (165)
T cd04140 53 ITDTTGS-HQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEG 131 (165)
T ss_pred EEECCCC-CcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHH
Confidence 3456776 3333333455788999999999876554322 11 11221 24799999999999763221 111
Q ss_pred HHHHHhhCceEEEecCcCCCcchhhhHHHHHh
Q 020668 169 ATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 169 ~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
..+....+..++.+||++|.|++++.+.+.++
T Consensus 132 ~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 132 AACATEWNCAFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred HHHHHHhCCcEEEeecCCCCCHHHHHHHHHhc
Confidence 22233345678999999999999988776543
No 284
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.22 E-value=4.9e-06 Score=70.50 Aligned_cols=98 Identities=12% Similarity=-0.009 Sum_probs=63.6
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh-----CCCCeEEEEeccCCccHHh--HHHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL-----GNRKRILVLNREDMISMAD--RNAWAT 170 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~l-----~~k~~iiVlNK~DLl~~~~--~~~~~~ 170 (323)
+-++||+ .++.......+..+|.+++|+|.....+..+. .+..+. .+.|+++|.||+|+.+... .....+
T Consensus 53 i~Dt~G~-~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 131 (164)
T cd04175 53 ILDTAGT-EQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQN 131 (164)
T ss_pred EEECCCc-ccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHH
Confidence 3456787 44555555678999999999998654332211 111111 2579999999999975321 111122
Q ss_pred HHHhhCceEEEecCcCCCcchhhhHHHH
Q 020668 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (323)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (323)
..++.+..++.+||++|.|++++...+.
T Consensus 132 ~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 132 LARQWGCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred HHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 2344567899999999999998877654
No 285
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.22 E-value=2.3e-06 Score=72.38 Aligned_cols=53 Identities=21% Similarity=0.263 Sum_probs=35.5
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCcc
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (323)
||+++|.+|||||||+|++.+.... ...+.|+.+. ..+..+. .+.++||||..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~ 59 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFV--DDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQE 59 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCcc
Confidence 6899999999999999999975432 2223333332 1222322 46689999975
No 286
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.22 E-value=6.9e-06 Score=88.82 Aligned_cols=102 Identities=18% Similarity=0.134 Sum_probs=68.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCeEEEEeccCCccHHh-------------
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD------------- 164 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~iiVlNK~DLl~~~~------------- 164 (323)
+-++||| ..+..........+|++++|+|+.+++..........+. ++|+++|+||+|+.+...
T Consensus 530 fiDTPGh-e~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~ 608 (1049)
T PRK14845 530 FIDTPGH-EAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNE 608 (1049)
T ss_pred EEECCCc-HHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhh
Confidence 4568999 555555556678899999999998876555444444443 689999999999974210
Q ss_pred -----HHHHH-------HHHHhhC---------------ceEEEecCcCCCcchhhhHHHHHhhh
Q 020668 165 -----RNAWA-------TYFAKQG---------------TKVIFSNGQLGMGTMKLSRLAKALAS 202 (323)
Q Consensus 165 -----~~~~~-------~~~~~~g---------------~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (323)
..+.. ..+.+.| ..++++||++|+|+++|+..+..+.+
T Consensus 609 q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 609 QDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred hHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 11110 0111221 46899999999999999887765543
No 287
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.22 E-value=3.3e-06 Score=71.77 Aligned_cols=99 Identities=13% Similarity=0.070 Sum_probs=63.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHh---CCCCeEEEEeccCCccHHh--HHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWL---GNRKRILVLNREDMISMAD--RNAWA 169 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l---~~k~~iiVlNK~DLl~~~~--~~~~~ 169 (323)
+-++||+...........+..+|++|+|+|+.++.+..+ ..+.... .+.|+++|.||+|+..... ..+..
T Consensus 51 i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~ 130 (165)
T cd04146 51 ILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGE 130 (165)
T ss_pred EEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHH
Confidence 456788743223345567889999999999976643221 1122221 2678999999999864321 12222
Q ss_pred HHHHhhCceEEEecCcCC-CcchhhhHHHH
Q 020668 170 TYFAKQGTKVIFSNGQLG-MGTMKLSRLAK 198 (323)
Q Consensus 170 ~~~~~~g~~vi~iSa~~g-~gi~~L~~~l~ 198 (323)
...+..+..++.+|+++| .|++++.+.+.
T Consensus 131 ~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~ 160 (165)
T cd04146 131 KLASELGCLFFEVSAAEDYDGVHSVFHELC 160 (165)
T ss_pred HHHHHcCCEEEEeCCCCCchhHHHHHHHHH
Confidence 233345677899999999 48988876654
No 288
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.22 E-value=2.4e-06 Score=74.92 Aligned_cols=53 Identities=23% Similarity=0.293 Sum_probs=35.6
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccC-CCCceeeE--EEEEeCC---cEEEEecCCc
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAP-RPGVTRVL--KWVRFGK---DLEFLDSPGI 272 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~-~pgtT~~~--~~~~~~~---~~~liDTPGi 272 (323)
||+++|.+|||||||+|++..... ..+. .+.++.+. ..+.++. .+.|+||||-
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 60 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAF-LNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQ 60 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CccCcCCcccceeEEEEEEECCEEEEEEEEeCCCc
Confidence 689999999999999999987543 2222 23332232 2233332 4779999995
No 289
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.21 E-value=1.2e-06 Score=72.49 Aligned_cols=44 Identities=23% Similarity=0.392 Sum_probs=31.5
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEeCCcEEEEecCCc
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGI 272 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~~~liDTPGi 272 (323)
||+++|.+|||||||+|+|.+... .. + .|....+ .. .++||||.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~---~~-~-~t~~~~~---~~--~~iDt~G~ 45 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI---LY-K-KTQAVEY---ND--GAIDTPGE 45 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc---cc-c-cceeEEE---cC--eeecCchh
Confidence 589999999999999999997653 11 1 1322222 22 68999997
No 290
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.21 E-value=6.8e-06 Score=69.82 Aligned_cols=99 Identities=16% Similarity=0.085 Sum_probs=65.7
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHH----HHHhC-CCCeEEEEeccCCccHHhH-HHHHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLM----DQWLG-NRKRILVLNREDMISMADR-NAWATYF 172 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~-~~i----~~~l~-~k~~iiVlNK~DLl~~~~~-~~~~~~~ 172 (323)
+-++||+ ..+.......+..+|++++|+|..++.+... ..+ ..+.. +.|+++|.||+|+.+..+. ....+.+
T Consensus 60 ~~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~ 138 (169)
T cd04114 60 IWDTAGQ-ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEF 138 (169)
T ss_pred EEECCCc-HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHH
Confidence 4467887 4566666778899999999999876533211 111 11122 4678999999999754331 2222333
Q ss_pred Hh-hCceEEEecCcCCCcchhhhHHHHH
Q 020668 173 AK-QGTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 173 ~~-~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
.+ ....++.+|+++|.|+.++.+.+..
T Consensus 139 ~~~~~~~~~~~Sa~~~~gv~~l~~~i~~ 166 (169)
T cd04114 139 SDAQDMYYLETSAKESDNVEKLFLDLAC 166 (169)
T ss_pred HHHcCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 33 2356889999999999988776543
No 291
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.21 E-value=2.4e-06 Score=72.01 Aligned_cols=54 Identities=28% Similarity=0.375 Sum_probs=35.7
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeC-----CcEEEEecCCc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG-----KDLEFLDSPGI 272 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~-----~~~~liDTPGi 272 (323)
++|+++|.+|+|||||+|++.+... .....|.++.+. ..+.+. -.+.++||||.
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 61 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIF-TKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCch
Confidence 3699999999999999999997543 222233333332 122222 24789999995
No 292
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.21 E-value=2e-06 Score=73.04 Aligned_cols=98 Identities=13% Similarity=-0.018 Sum_probs=61.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHH----HhCCCCeEEEEeccCCccHHhHH-------
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQ----WLGNRKRILVLNREDMISMADRN------- 166 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~----~l~~k~~iiVlNK~DLl~~~~~~------- 166 (323)
+-++||+. ++.......++.+|++++|+|+.++.+.... .+.. ...++|+++|+||+|+.+.....
T Consensus 52 ~~D~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 130 (171)
T cd00157 52 LWDTAGQE-EYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGK 130 (171)
T ss_pred EEeCCCcc-cccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCC
Confidence 34467763 2222222345889999999998765432221 1111 12258999999999997655321
Q ss_pred ------HHHHHHHhhCc-eEEEecCcCCCcchhhhHHHH
Q 020668 167 ------AWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAK 198 (323)
Q Consensus 167 ------~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~l~ 198 (323)
...+.....+. .++.+|+++|.|++++.+.+.
T Consensus 131 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 169 (171)
T cd00157 131 EPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAI 169 (171)
T ss_pred CccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHh
Confidence 12223333444 789999999999999877654
No 293
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.21 E-value=2.6e-06 Score=70.59 Aligned_cols=53 Identities=26% Similarity=0.338 Sum_probs=36.6
Q ss_pred eeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEeC-CcEEEEecCCcc
Q 020668 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG-KDLEFLDSPGII 273 (323)
Q Consensus 220 v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~-~~~~liDTPGi~ 273 (323)
|+++|.+|||||||+|+|.+... .....|.+..+...+..+ ..+.++||||..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 55 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQF-SEDTIPTVGFNMRKVTKGNVTLKVWDLGGQP 55 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCC-CcCccCCCCcceEEEEECCEEEEEEECCCCH
Confidence 78999999999999999998643 333344443333333322 357899999963
No 294
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.21 E-value=1.6e-06 Score=80.07 Aligned_cols=57 Identities=30% Similarity=0.420 Sum_probs=48.9
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCcccc-c-cCCCCceeeEEEEEeCCcEEEEecCCcc
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRRMCP-A-APRPGVTRVLKWVRFGKDLEFLDSPGII 273 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~-v-~~~pgtT~~~~~~~~~~~~~liDTPGi~ 273 (323)
..+++++|.+|||||||||.++..+... + ...+|-|+.++.++.++.++++|.||+-
T Consensus 136 ~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~ 194 (320)
T KOG2486|consen 136 RPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYG 194 (320)
T ss_pred CceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcc
Confidence 4679999999999999999999765432 3 3489999999999999999999999953
No 295
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=7.2e-06 Score=81.73 Aligned_cols=101 Identities=18% Similarity=0.070 Sum_probs=70.5
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCeEEEEeccCCccHHhHHHHHHHHHh---
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAK--- 174 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~iiVlNK~DLl~~~~~~~~~~~~~~--- 174 (323)
.-++|||++ +...-.+.+.-+|+|++||.+.++...--.+-....+ +.|+++++||||....+- .+....+..
T Consensus 205 FLDTPGHaA-F~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~p-ekv~~eL~~~gi 282 (683)
T KOG1145|consen 205 FLDTPGHAA-FSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANP-EKVKRELLSQGI 282 (683)
T ss_pred EecCCcHHH-HHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCH-HHHHHHHHHcCc
Confidence 447899954 3333336678899999999999887665544444444 789999999999764332 222233333
Q ss_pred ----hC--ceEEEecCcCCCcchhhhHHHHHhhh
Q 020668 175 ----QG--TKVIFSNGQLGMGTMKLSRLAKALAS 202 (323)
Q Consensus 175 ----~g--~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (323)
.| ..++++||++|+|++.|.+.+.-++.
T Consensus 283 ~~E~~GGdVQvipiSAl~g~nl~~L~eaill~Ae 316 (683)
T KOG1145|consen 283 VVEDLGGDVQVIPISALTGENLDLLEEAILLLAE 316 (683)
T ss_pred cHHHcCCceeEEEeecccCCChHHHHHHHHHHHH
Confidence 33 46899999999999999887665543
No 296
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.20 E-value=3.2e-06 Score=71.85 Aligned_cols=55 Identities=24% Similarity=0.397 Sum_probs=35.0
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCcc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (323)
++|+++|.+|||||||+|+|.+... .....+..+.+. ..+.... .+.++||||..
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 60 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQE 60 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CcCcCCccceEEEEEEEEECCEEEEEEEEeCCChH
Confidence 3699999999999999999997643 222222222221 2222322 35689999963
No 297
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.20 E-value=6.4e-06 Score=72.05 Aligned_cols=98 Identities=14% Similarity=0.045 Sum_probs=61.1
Q ss_pred cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh---CCCCeEEEEeccCCccH---Hh---HHHHH-
Q 020668 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL---GNRKRILVLNREDMISM---AD---RNAWA- 169 (323)
Q Consensus 102 ~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l---~~k~~iiVlNK~DLl~~---~~---~~~~~- 169 (323)
+++|+ .++.......+..+|++++|+|..++.+..+ ..+.... .....++|.||+||... .+ ..+..
T Consensus 55 Dt~G~-~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~~~~~~~~~~~~~~~~~ 133 (182)
T cd04128 55 DLGGQ-REFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLFADLPPEEQEEITKQAR 133 (182)
T ss_pred eCCCc-hhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhhhHHHHH
Confidence 45565 4455444566789999999999876644322 1122221 12344789999999621 11 11222
Q ss_pred HHHHhhCceEEEecCcCCCcchhhhHHHHHh
Q 020668 170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
++.+..+..++.+||++|.|++++.+.+.+.
T Consensus 134 ~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~ 164 (182)
T cd04128 134 KYAKAMKAPLIFCSTSHSINVQKIFKIVLAK 164 (182)
T ss_pred HHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 2233455778999999999999988776543
No 298
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.20 E-value=5.2e-06 Score=72.56 Aligned_cols=99 Identities=12% Similarity=-0.005 Sum_probs=63.0
Q ss_pred cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh----CCCCeEEEEeccCCccHHh------HHHHHH
Q 020668 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL----GNRKRILVLNREDMISMAD------RNAWAT 170 (323)
Q Consensus 102 ~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~-~~i~~~l----~~k~~iiVlNK~DLl~~~~------~~~~~~ 170 (323)
++||. .++.......+..+|++++|+|..++.+..+ ..+...+ .+.|+++|.||+|+.+... ..+..+
T Consensus 56 D~~G~-~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~ 134 (193)
T cd04118 56 DTAGS-ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQD 134 (193)
T ss_pred ECCCc-hhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHH
Confidence 45665 3333333445679999999999876533221 1112222 2579999999999865321 112222
Q ss_pred HHHhhCceEEEecCcCCCcchhhhHHHHHhh
Q 020668 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
+....+..++.+||++|.|+++|.+.+.+..
T Consensus 135 ~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 135 FADEIKAQHFETSSKTGQNVDELFQKVAEDF 165 (193)
T ss_pred HHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3334456789999999999999988776544
No 299
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.20 E-value=2.7e-06 Score=73.21 Aligned_cols=55 Identities=18% Similarity=0.267 Sum_probs=37.9
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe-CCcEEEEecCCcc
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (323)
.++|+++|.+|||||||+++|...... ...|.++.+...+.. ...+.++||||..
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~--~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~ 64 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSV--TTIPTVGFNVETVTYKNVKFNVWDVGGQD 64 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCc--cccCCcccceEEEEECCEEEEEEECCCCH
Confidence 468999999999999999999865432 223433333333332 3458899999984
No 300
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.19 E-value=1.8e-06 Score=74.53 Aligned_cols=54 Identities=26% Similarity=0.392 Sum_probs=35.5
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceee--EEEEEeC---CcEEEEecCCcc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFG---KDLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~---~~~~liDTPGi~ 273 (323)
.+|+++|.+|||||||+|++++... .....| |+.+ ...+..+ -.+.++||||..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~-~~~~~~-t~~~~~~~~~~~~~~~~~~~l~D~~g~~ 60 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF-VESYYP-TIENTFSKIIRYKGQDYHLEIVDTAGQD 60 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-ccccCc-chhhhEEEEEEECCEEEEEEEEECCChH
Confidence 3699999999999999999997542 222333 3322 1222222 246799999974
No 301
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=6e-06 Score=84.57 Aligned_cols=102 Identities=25% Similarity=0.210 Sum_probs=73.7
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCeEEEEeccCCccH------H--------
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISM------A-------- 163 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~iiVlNK~DLl~~------~-------- 163 (323)
+.++||| ..+.+.-....+.||++|+|+|..+++..--.+-..+|+ +.|+|+++||+|.+-. .
T Consensus 544 vIdtpgh-EsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkk 622 (1064)
T KOG1144|consen 544 VIDTPGH-ESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKK 622 (1064)
T ss_pred EecCCCc-hhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHH
Confidence 7789999 666666667789999999999999887655544455555 6799999999997521 1
Q ss_pred ----hHHHHHH-------HHHhhC---------------ceEEEecCcCCCcchhhhHHHHHhhh
Q 020668 164 ----DRNAWAT-------YFAKQG---------------TKVIFSNGQLGMGTMKLSRLAKALAS 202 (323)
Q Consensus 164 ----~~~~~~~-------~~~~~g---------------~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (323)
-++++.. .|..+| +.++++||..|+|+-+|+-+|.++..
T Consensus 623 Q~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 623 QKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 0122222 233323 25789999999999999988877754
No 302
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.19 E-value=3.7e-06 Score=82.61 Aligned_cols=128 Identities=16% Similarity=0.087 Sum_probs=85.4
Q ss_pred CCcchhhHhhhcccccCcceeeeecc-------ccccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHH
Q 020668 71 NGSIEAYEEECDWADLDADLYYWTKS-------LRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMD 142 (323)
Q Consensus 71 ~~~~~~~~e~e~~~~~~~~~~~~~~~-------l~~i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~-~~i~ 142 (323)
-+.|...-|||.++|+.+.-..-... .-.+.++||| ..+.-+.-+.+..|.-.|+||||..+...-. .++.
T Consensus 44 Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH-VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~Y 122 (603)
T COG0481 44 QVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH-VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY 122 (603)
T ss_pred HhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc-cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHH
Confidence 34555666999999887663322221 1126789999 5566677778899999999999988764321 1222
Q ss_pred HHh-CCCCeEEEEeccCCccHHhHHHHHHHHHh-hC---ceEEEecCcCCCcchhhhHHHHHh
Q 020668 143 QWL-GNRKRILVLNREDMISMADRNAWATYFAK-QG---TKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 143 ~~l-~~k~~iiVlNK~DLl~~~~~~~~~~~~~~-~g---~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
..+ .+-.++-|+||+||-..+ .+...+.++. .| .+.+.+||++|.|++++++.+.+.
T Consensus 123 lAle~~LeIiPViNKIDLP~Ad-pervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~ 184 (603)
T COG0481 123 LALENNLEIIPVLNKIDLPAAD-PERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEK 184 (603)
T ss_pred HHHHcCcEEEEeeecccCCCCC-HHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhh
Confidence 223 267899999999985432 1222233332 34 358899999999999988876654
No 303
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.19 E-value=3.1e-06 Score=73.77 Aligned_cols=55 Identities=22% Similarity=0.350 Sum_probs=36.6
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCC--CceeeEEEEEe----CCcEEEEecCCcc
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP--GVTRVLKWVRF----GKDLEFLDSPGII 273 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~p--gtT~~~~~~~~----~~~~~liDTPGi~ 273 (323)
.++|+++|.+|||||||+|++...... ...| |.+.....+.. +-.+.++||||..
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 63 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV--NTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQE 63 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC--CcCCccccceeEEEeeccCCCceEEEEEECCCcH
Confidence 468999999999999999999875432 2233 22222222221 2357899999974
No 304
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.19 E-value=2.7e-06 Score=74.13 Aligned_cols=55 Identities=20% Similarity=0.285 Sum_probs=37.1
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe-CCcEEEEecCCcc
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (323)
..+|+++|.+|||||||+|+|.+.......+..+.+. ..+.. +..+.++||||-.
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~--~~i~~~~~~~~l~D~~G~~ 74 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTS--EELTIGNIKFKTFDLGGHE 74 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcce--EEEEECCEEEEEEECCCCH
Confidence 4579999999999999999999765432222222222 22333 4467899999953
No 305
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.19 E-value=1.1e-05 Score=82.99 Aligned_cols=99 Identities=17% Similarity=0.116 Sum_probs=67.3
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCeEEEEeccCCccHHh-------------
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD------------- 164 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~iiVlNK~DLl~~~~------------- 164 (323)
+-++||| ..+.......+..+|++++|+|+..+..........++. +.|+++++||+|+.+...
T Consensus 75 ~iDTPG~-e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~ 153 (586)
T PRK04004 75 FIDTPGH-EAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIEK 153 (586)
T ss_pred EEECCCh-HHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHhh
Confidence 4568999 556666667789999999999999865444444334433 789999999999863100
Q ss_pred -----HH-------HHHHHHHhhC---------------ceEEEecCcCCCcchhhhHHHHH
Q 020668 165 -----RN-------AWATYFAKQG---------------TKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 165 -----~~-------~~~~~~~~~g---------------~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
.. +...++.+.| ..++++||.+|.|+++|.+.+..
T Consensus 154 ~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 154 QSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 00 1111222222 45899999999999988877643
No 306
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.18 E-value=9.7e-06 Score=85.07 Aligned_cols=93 Identities=15% Similarity=0.061 Sum_probs=72.6
Q ss_pred CCCcchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC-
Q 020668 70 SNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG- 146 (323)
Q Consensus 70 ~~~~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~- 146 (323)
.-+.|-...|++.+++++..+..|...-.. +-++|||. ++..++...++.+|++++|+|+..+....+..+..++.
T Consensus 47 ~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~-~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~ 125 (689)
T TIGR00484 47 AATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHV-DFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANR 125 (689)
T ss_pred ccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCc-chhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHH
Confidence 356777788999999999887777655444 66889995 45567888899999999999999887666555555544
Q ss_pred -CCCeEEEEeccCCccHH
Q 020668 147 -NRKRILVLNREDMISMA 163 (323)
Q Consensus 147 -~k~~iiVlNK~DLl~~~ 163 (323)
++|+++++||+|+...+
T Consensus 126 ~~~p~ivviNK~D~~~~~ 143 (689)
T TIGR00484 126 YEVPRIAFVNKMDKTGAN 143 (689)
T ss_pred cCCCEEEEEECCCCCCCC
Confidence 78999999999998543
No 307
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.18 E-value=2.1e-06 Score=72.18 Aligned_cols=53 Identities=25% Similarity=0.263 Sum_probs=35.6
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeC---CcEEEEecCCcc
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG---KDLEFLDSPGII 273 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~---~~~~liDTPGi~ 273 (323)
||+++|.+|||||||+|+|..... +....+++.+. .....+ ..+.++||||..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 59 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQE 59 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--ccccCCcchhhEEEEEEECCEEEEEEEEECCChh
Confidence 689999999999999999996542 23333444332 112222 247789999964
No 308
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.18 E-value=1.8e-06 Score=73.66 Aligned_cols=53 Identities=26% Similarity=0.228 Sum_probs=34.8
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCc----eeeEEEEEeCCcEEEEecCCcc
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGV----TRVLKWVRFGKDLEFLDSPGII 273 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgt----T~~~~~~~~~~~~~liDTPGi~ 273 (323)
||+++|.+|||||||+|++.+.... ...|.+ |.........-.+.++||||..
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 58 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFP--ENVPRVLPEITIPADVTPERVPTTIVDTSSRP 58 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC--ccCCCcccceEeeeeecCCeEEEEEEeCCCch
Confidence 6899999999999999999875432 223332 2221111112357799999974
No 309
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.18 E-value=8.1e-06 Score=72.90 Aligned_cols=97 Identities=10% Similarity=0.050 Sum_probs=64.0
Q ss_pred cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh-CCCCeEEEEeccCCccHHhH--HHHHHHHH
Q 020668 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL-GNRKRILVLNREDMISMADR--NAWATYFA 173 (323)
Q Consensus 102 ~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l-~~k~~iiVlNK~DLl~~~~~--~~~~~~~~ 173 (323)
+++|+ .++.......++.+|.+|+|+|..++.+..+. .+.... .+.|+++|.||+||.+..++ ....++.+
T Consensus 55 DtaGq-e~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~ 133 (202)
T cd04120 55 DTAGQ-ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQ 133 (202)
T ss_pred eCCCc-hhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHH
Confidence 45666 56666666788999999999999876543221 111111 25789999999999653322 11122222
Q ss_pred hh-CceEEEecCcCCCcchhhhHHHHH
Q 020668 174 KQ-GTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 174 ~~-g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
+. +..++.+||++|.|++++.+.+..
T Consensus 134 ~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 134 QITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 32 567899999999999988765543
No 310
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.17 E-value=3.4e-06 Score=72.23 Aligned_cols=95 Identities=13% Similarity=-0.038 Sum_probs=60.4
Q ss_pred cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh---CCCCeEEEEeccCCccHHhHHHHHH-----H
Q 020668 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL---GNRKRILVLNREDMISMADRNAWAT-----Y 171 (323)
Q Consensus 102 ~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l---~~k~~iiVlNK~DLl~~~~~~~~~~-----~ 171 (323)
++||+ .++.......++.+|++|+|+|+.++.+.. ...+.+++ .++|+++|.||+|+..........+ .
T Consensus 50 Dt~G~-~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~ 128 (164)
T cd04162 50 EIGGS-QNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEP 128 (164)
T ss_pred ECCCC-cchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChh
Confidence 46777 445555556789999999999987654211 12233333 3689999999999865433222211 1
Q ss_pred H-HhhCceEEEecCcC------CCcchhhhHHH
Q 020668 172 F-AKQGTKVIFSNGQL------GMGTMKLSRLA 197 (323)
Q Consensus 172 ~-~~~g~~vi~iSa~~------g~gi~~L~~~l 197 (323)
+ ++.+..++.+||++ ++|+.++.+.+
T Consensus 129 ~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~ 161 (164)
T cd04162 129 IARGRRWILQGTSLDDDGSPSRMEAVKDLLSQL 161 (164)
T ss_pred hcCCCceEEEEeeecCCCChhHHHHHHHHHHHH
Confidence 2 23345677788877 88887776654
No 311
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.17 E-value=3.7e-06 Score=73.32 Aligned_cols=56 Identities=29% Similarity=0.375 Sum_probs=37.0
Q ss_pred eEeeeecCCCCChhhHHHhhhcCcccc-ccCCCCceeeEEEEEeCC---cEEEEecCCcc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~-v~~~pgtT~~~~~~~~~~---~~~liDTPGi~ 273 (323)
++|+++|.+|||||||+|++.+..... ..+..|.+.....+.++. .+.++||||..
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~ 60 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQE 60 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH
Confidence 369999999999999999999764321 122223333333344433 36789999964
No 312
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.16 E-value=3e-06 Score=71.59 Aligned_cols=53 Identities=23% Similarity=0.340 Sum_probs=34.9
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe-CCcEEEEecCCcc
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (323)
||+++|.+|||||||+|+|....... ..|.+..+...+.. +..+.++||||..
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~i~Dt~G~~ 54 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT--TIPTIGFNVETVTYKNLKFQVWDLGGQT 54 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC--cCCccCcCeEEEEECCEEEEEEECCCCH
Confidence 48999999999999999997654322 22321122222222 3467899999974
No 313
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.16 E-value=2.3e-06 Score=71.56 Aligned_cols=53 Identities=19% Similarity=0.198 Sum_probs=36.8
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEE--EEEeC---CcEEEEecCCcc
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG---KDLEFLDSPGII 273 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~---~~~~liDTPGi~ 273 (323)
||+++|.+|||||||+|+|++.. ..+....+|.+.. .+..+ -.+.++||||..
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 58 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQE 58 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChH
Confidence 48999999999999999999765 2344444444422 22333 246789999975
No 314
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.16 E-value=6.4e-06 Score=69.62 Aligned_cols=97 Identities=12% Similarity=-0.094 Sum_probs=62.1
Q ss_pred ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-H----HHHHh--CCCCeEEEEeccCCccHHhH--HHHHHH
Q 020668 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L----MDQWL--GNRKRILVLNREDMISMADR--NAWATY 171 (323)
Q Consensus 101 ~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~-~----i~~~l--~~k~~iiVlNK~DLl~~~~~--~~~~~~ 171 (323)
-+.||+ .++.......+..+|.+++|+|..++.+..+. . +.+.. .++|+++|.||+|+.+.... .+....
T Consensus 54 ~Dt~G~-~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~ 132 (163)
T cd04176 54 LDTAGT-EQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRAL 132 (163)
T ss_pred EECCCc-ccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHH
Confidence 356775 44555555667899999999998765432211 1 11111 26899999999998653221 111222
Q ss_pred HHhhCceEEEecCcCCCcchhhhHHHH
Q 020668 172 FAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (323)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (323)
....+..++++||++|.|+.++.+.+.
T Consensus 133 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 133 AEEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred HHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 233456789999999999998876654
No 315
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.16 E-value=4.3e-06 Score=71.43 Aligned_cols=54 Identities=26% Similarity=0.308 Sum_probs=35.6
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeC---CcEEEEecCCcc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG---KDLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~---~~~~liDTPGi~ 273 (323)
++|+++|.||||||||+|++.+.... .....|+.+. ..+..+ ..+.++||||..
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 60 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFI--ESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTE 60 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCcchheEEEEEEECCEEEEEEEEeCCCcc
Confidence 47999999999999999999965432 2222233221 222333 246799999965
No 316
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.16 E-value=4.3e-06 Score=70.96 Aligned_cols=55 Identities=24% Similarity=0.298 Sum_probs=35.5
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceee-EEEEEe---CCcEEEEecCCcc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-LKWVRF---GKDLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~-~~~~~~---~~~~~liDTPGi~ 273 (323)
+||+++|.+|||||||+|+|.+... .....|..... ...+.. ...+.++||||..
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~ 59 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKF-PTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQE 59 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcc
Confidence 4799999999999999999997653 22222222111 111121 1247899999975
No 317
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.16 E-value=2.8e-06 Score=72.07 Aligned_cols=54 Identities=24% Similarity=0.256 Sum_probs=36.4
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCcc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (323)
.+|+++|.+|||||||+|++..... ....+.|+.+. ..+.++. .+.++||||..
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE 60 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEECCCcc
Confidence 4799999999999999999985432 23344444432 2233332 35689999974
No 318
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.15 E-value=1.1e-05 Score=69.72 Aligned_cols=98 Identities=10% Similarity=-0.076 Sum_probs=64.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH-----HHHHh--CCCCeEEEEeccCCccHHhH--HHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL--GNRKRILVLNREDMISMADR--NAWAT 170 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~-----i~~~l--~~k~~iiVlNK~DLl~~~~~--~~~~~ 170 (323)
+-+.||. .++.......+..+|.+++|+|..++.+..+.. +.+.. .+.|+++|.||+|+....++ .+..+
T Consensus 54 i~Dt~G~-~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~ 132 (172)
T cd04141 54 ILDTAGQ-AEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRN 132 (172)
T ss_pred EEeCCCc-hhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHH
Confidence 3456776 445555556788999999999988765543321 22221 25799999999998643211 12222
Q ss_pred HHHhhCceEEEecCcCCCcchhhhHHHH
Q 020668 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (323)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (323)
..++.+..++.+||++|.|++++.+.+.
T Consensus 133 ~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 133 LAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred HHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 3344567889999999999998876654
No 319
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.15 E-value=5.2e-06 Score=70.69 Aligned_cols=54 Identities=22% Similarity=0.349 Sum_probs=36.2
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCcee---eEEEEEeCC---cEEEEecCCcc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR---VLKWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~---~~~~~~~~~---~~~liDTPGi~ 273 (323)
+||+++|.+|||||||+|++.+.... ...+.|+. ....+.++. .+.++||||..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 62 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFM--ADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE 62 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CCCCcccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 57999999999999999999976421 22233321 122334433 46799999963
No 320
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.15 E-value=7.1e-06 Score=74.27 Aligned_cols=99 Identities=11% Similarity=-0.042 Sum_probs=62.5
Q ss_pred ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----CCCCeEEEEeccCCccH------------
Q 020668 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISM------------ 162 (323)
Q Consensus 101 ~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~l----~~k~~iiVlNK~DLl~~------------ 162 (323)
-++||+ .++.......+..+|++|+|+|..+..+..+. .+..+. .+.|+++|.||+||.+.
T Consensus 49 wDt~G~-e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~ 127 (220)
T cd04126 49 WDTAGR-EQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGD 127 (220)
T ss_pred EeCCCc-ccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccc
Confidence 345676 34444445568899999999998876443221 122222 24689999999999751
Q ss_pred -------Hh--HHHHHHHHHhhC--------------ceEEEecCcCCCcchhhhHHHHHh
Q 020668 163 -------AD--RNAWATYFAKQG--------------TKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 163 -------~~--~~~~~~~~~~~g--------------~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
.+ .++...+.++.+ ..++.+||++|.|++++...+.+.
T Consensus 128 ~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~ 188 (220)
T cd04126 128 RVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNL 188 (220)
T ss_pred cccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHH
Confidence 10 122222233322 468899999999999987765543
No 321
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.14 E-value=4.7e-06 Score=70.19 Aligned_cols=54 Identities=22% Similarity=0.262 Sum_probs=36.0
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCcc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (323)
.+|+++|.+|||||||+|++..... +...+.|+.+. ..+..+. .+.++||||..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTE 60 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CcccCCchhhhEEEEEEECCEEEEEEEEECCCcc
Confidence 4799999999999999999996542 22233344332 2233332 35689999974
No 322
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.14 E-value=7.5e-06 Score=86.52 Aligned_cols=58 Identities=31% Similarity=0.516 Sum_probs=45.4
Q ss_pred ccceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe---CCcEEEEecCCcc
Q 020668 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (323)
Q Consensus 215 ~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~liDTPGi~ 273 (323)
.++..|+++|.+|+|||||+++|.+... ..+..+|+|.++..+.+ +..+.|+||||..
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v-~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe 348 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNV-AAGEAGGITQHIGAYQVETNGGKITFLDTPGHE 348 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCc-cccccCceeeeccEEEEEECCEEEEEEECCCCc
Confidence 4577899999999999999999987543 44556788887654333 4578999999974
No 323
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.14 E-value=5.1e-06 Score=70.76 Aligned_cols=53 Identities=28% Similarity=0.370 Sum_probs=34.9
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCC---CceeeEEEEEeC---CcEEEEecCCcc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP---GVTRVLKWVRFG---KDLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~p---gtT~~~~~~~~~---~~~~liDTPGi~ 273 (323)
++|+++|.+|||||||+|++++... .....| .+++ ..+..+ ..+.++||||..
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~G~~ 60 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTF-RESYIPTIEDTYR--QVISCSKNICTLQITDTTGSH 60 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CCCcCCcchheEE--EEEEECCEEEEEEEEECCCCC
Confidence 5799999999999999999997542 222222 1221 112222 247799999975
No 324
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.14 E-value=3.7e-06 Score=70.40 Aligned_cols=53 Identities=26% Similarity=0.422 Sum_probs=35.0
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCc
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGI 272 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi 272 (323)
||+++|.+|||||||+|+|++.... ....+.++.+. ..+.... .+.++||||-
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 59 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFN-EKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQ 59 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCcCCccceeEEEEEEEECCEEEEEEEEECCch
Confidence 6899999999999999999976432 22222332222 2233222 4779999995
No 325
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.14 E-value=1.2e-05 Score=73.53 Aligned_cols=88 Identities=17% Similarity=0.095 Sum_probs=65.3
Q ss_pred cchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CC
Q 020668 73 SIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NR 148 (323)
Q Consensus 73 ~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k 148 (323)
.|-...|++.+.++...+..+.....+ +-++||| .++...+...++.+|.+++|+|+..+.......+.+++. ++
T Consensus 39 ~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~-~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~ 117 (237)
T cd04168 39 TDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGH-MDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNI 117 (237)
T ss_pred CCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCc-cchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCC
Confidence 344456777788877776666555444 6688999 567778888999999999999999876544444444443 78
Q ss_pred CeEEEEeccCCcc
Q 020668 149 KRILVLNREDMIS 161 (323)
Q Consensus 149 ~~iiVlNK~DLl~ 161 (323)
|+++++||+|+..
T Consensus 118 P~iivvNK~D~~~ 130 (237)
T cd04168 118 PTIIFVNKIDRAG 130 (237)
T ss_pred CEEEEEECccccC
Confidence 9999999999874
No 326
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.14 E-value=7.2e-06 Score=70.03 Aligned_cols=97 Identities=13% Similarity=0.084 Sum_probs=61.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----CCCCeEEEEeccCCccHHhHHHHHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l-----~~k~~iiVlNK~DLl~~~~~~~~~~~~ 172 (323)
+-++||+ .+........++.+|.+++|+|+....... ...+...+ .+.|+++++||+|+....+.++..+.+
T Consensus 62 ~~D~~G~-~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l 140 (173)
T cd04155 62 VWDIGGQ-RAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEAL 140 (173)
T ss_pred EEECCCC-HHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHc
Confidence 3356776 445555566778999999999987532211 11222222 257999999999997654433333333
Q ss_pred HhhC-----ceEEEecCcCCCcchhhhHHH
Q 020668 173 AKQG-----TKVIFSNGQLGMGTMKLSRLA 197 (323)
Q Consensus 173 ~~~g-----~~vi~iSa~~g~gi~~L~~~l 197 (323)
.-.. ..++.+||++|.|++++.+.+
T Consensus 141 ~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 170 (173)
T cd04155 141 NLHDLRDRTWHIQACSAKTGEGLQEGMNWV 170 (173)
T ss_pred CCcccCCCeEEEEEeECCCCCCHHHHHHHH
Confidence 2111 246789999999999887665
No 327
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.13 E-value=1.6e-05 Score=69.27 Aligned_cols=95 Identities=14% Similarity=0.112 Sum_probs=73.6
Q ss_pred ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--C-CCeEEEEeccCCccHHhHHHHHHHHHhh--
Q 020668 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N-RKRILVLNREDMISMADRNAWATYFAKQ-- 175 (323)
Q Consensus 101 ~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~-k~~iiVlNK~DLl~~~~~~~~~~~~~~~-- 175 (323)
=.+||| .++.-.+....+.++-+|+++|.+.+.+.....+.+++. + .|++++.||.||-+....++..+++...
T Consensus 73 fgtPGq-~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~ 151 (187)
T COG2229 73 FGTPGQ-ERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLELL 151 (187)
T ss_pred ecCCCc-HHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhccC
Confidence 357999 777777777889999999999999998886677777765 4 7899999999998664444455555443
Q ss_pred CceEEEecCcCCCcchhhhHH
Q 020668 176 GTKVIFSNGQLGMGTMKLSRL 196 (323)
Q Consensus 176 g~~vi~iSa~~g~gi~~L~~~ 196 (323)
..+++.+++..++|..+.++.
T Consensus 152 ~~~vi~~~a~e~~~~~~~L~~ 172 (187)
T COG2229 152 SVPVIEIDATEGEGARDQLDV 172 (187)
T ss_pred CCceeeeecccchhHHHHHHH
Confidence 578999999999987665443
No 328
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.13 E-value=3.8e-06 Score=72.07 Aligned_cols=53 Identities=26% Similarity=0.288 Sum_probs=37.0
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe-CCcEEEEecCCcc
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (323)
+|+++|.+|||||||+|+|.+.......+..|.++. .+.. +..+.++||||-.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~--~~~~~~~~~~i~D~~G~~ 54 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPT--KLRLDKYEVCIFDLGGGA 54 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEE--EEEECCEEEEEEECCCcH
Confidence 378999999999999999997633333444454432 2233 3468899999953
No 329
>PRK12735 elongation factor Tu; Reviewed
Probab=98.12 E-value=4.3e-06 Score=82.16 Aligned_cols=57 Identities=23% Similarity=0.371 Sum_probs=42.2
Q ss_pred cceEeeeecCCCCChhhHHHhhhcC------cccc---------ccCCCCceeeEEEEEe---CCcEEEEecCCc
Q 020668 216 RAVRAGIVGYPNVGKSSLINRLLKR------RMCP---------AAPRPGVTRVLKWVRF---GKDLEFLDSPGI 272 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~------~~~~---------v~~~pgtT~~~~~~~~---~~~~~liDTPGi 272 (323)
..++|+++|.+|+|||||+|+|++. .... .....|+|.+.....+ +..+.|+||||.
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh 85 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGH 85 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCH
Confidence 4688999999999999999999852 1111 1124689988755444 446889999996
No 330
>PLN03118 Rab family protein; Provisional
Probab=98.12 E-value=1e-05 Score=72.19 Aligned_cols=101 Identities=13% Similarity=0.003 Sum_probs=67.1
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH--HHHHh------CCCCeEEEEeccCCccHHh--HHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL------GNRKRILVLNREDMISMAD--RNAWA 169 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~--i~~~l------~~k~~iiVlNK~DLl~~~~--~~~~~ 169 (323)
+-++||+ .++.......++.+|++|+|+|+.++.+..+.. +...+ .+.++++|.||+|+..... .....
T Consensus 66 l~Dt~G~-~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~ 144 (211)
T PLN03118 66 IWDTAGQ-ERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGM 144 (211)
T ss_pred EEECCCc-hhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHH
Confidence 5578887 555555567789999999999987654322211 11111 1458899999999975432 12222
Q ss_pred HHHHhhCceEEEecCcCCCcchhhhHHHHHhh
Q 020668 170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
......+..++.+||++|.|++++.+.+....
T Consensus 145 ~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~ 176 (211)
T PLN03118 145 ALAKEHGCLFLECSAKTRENVEQCFEELALKI 176 (211)
T ss_pred HHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 33344566789999999999999887765443
No 331
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.12 E-value=6.2e-06 Score=70.49 Aligned_cols=98 Identities=14% Similarity=0.031 Sum_probs=61.4
Q ss_pred ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--H----HHHHhCCCCeEEEEeccCCccHHh-H--------
Q 020668 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--L----MDQWLGNRKRILVLNREDMISMAD-R-------- 165 (323)
Q Consensus 101 ~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~--~----i~~~l~~k~~iiVlNK~DLl~~~~-~-------- 165 (323)
-++||. .++.......++.+|++|+|+|..++.+..+. . +.....+.|+++|.||+|+.+... .
T Consensus 51 ~Dt~G~-~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 129 (174)
T smart00174 51 WDTAGQ-EDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQ 129 (174)
T ss_pred EECCCC-cccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccC
Confidence 346776 33333333457899999999998765432221 1 111123689999999999975321 0
Q ss_pred -----HHHHHHHHhhCc-eEEEecCcCCCcchhhhHHHHH
Q 020668 166 -----NAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 166 -----~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
++..+..++.+. .++.+||++|.|++++.+.+..
T Consensus 130 ~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~ 169 (174)
T smart00174 130 EPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIR 169 (174)
T ss_pred CCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHH
Confidence 111122334453 7899999999999988776543
No 332
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.11 E-value=5.9e-06 Score=70.63 Aligned_cols=54 Identities=20% Similarity=0.164 Sum_probs=34.9
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCcc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (323)
++|+++|.+|+|||||+|++.+.... .....|+.+. ..+.++. .+.++||||--
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 59 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE 59 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCcc
Confidence 36999999999999999999876432 2222222221 1233332 25689999974
No 333
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.11 E-value=1.3e-05 Score=69.83 Aligned_cols=97 Identities=12% Similarity=0.080 Sum_probs=64.1
Q ss_pred ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-------C-CCCeEEEEeccCCccHHhH--HHHHH
Q 020668 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------G-NRKRILVLNREDMISMADR--NAWAT 170 (323)
Q Consensus 101 ~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l-------~-~k~~iiVlNK~DLl~~~~~--~~~~~ 170 (323)
-++||+ .++.......++.+|++++|+|..++.+.. .+..|+ . ..|+++|.||+|+.+.... .....
T Consensus 54 ~Dt~g~-~~~~~~~~~~~~~~d~iilv~d~~~~~s~~--~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~ 130 (188)
T cd04125 54 WDTNGQ-ERFRSLNNSYYRGAHGYLLVYDVTDQESFE--NLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKS 130 (188)
T ss_pred EECCCc-HHHHhhHHHHccCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHH
Confidence 356776 455555667789999999999987654321 122221 2 4689999999999754321 11122
Q ss_pred HHHhhCceEEEecCcCCCcchhhhHHHHHh
Q 020668 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
+....+..++.+||++|.|++++.+.+.+.
T Consensus 131 ~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 131 FCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred HHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 233456689999999999999887765543
No 334
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.11 E-value=6.8e-06 Score=70.06 Aligned_cols=55 Identities=24% Similarity=0.328 Sum_probs=35.9
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCc
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGI 272 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi 272 (323)
.++|+++|.+|||||||+|++.+... .....+..+.+. ..+.++. .+.++||||-
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~ 64 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKF-DTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ 64 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC-CcCcCCceeeEEEEEEEEECCeEEEEEEEeCCCh
Confidence 57899999999999999999986543 222223222221 2233322 3678999995
No 335
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.10 E-value=5.9e-06 Score=70.22 Aligned_cols=56 Identities=27% Similarity=0.361 Sum_probs=34.5
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccc-cCCCCceeeEEEEEeCC---cEEEEecCCcc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v-~~~pgtT~~~~~~~~~~---~~~liDTPGi~ 273 (323)
++|+++|.+|||||||++++........ .+..+.+.....+..+. .+.++||||--
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 60 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQE 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCch
Confidence 4699999999999999999986542111 11112222111222322 46799999964
No 336
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.09 E-value=7.3e-06 Score=72.46 Aligned_cols=56 Identities=23% Similarity=0.302 Sum_probs=36.4
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceee--EEEEEeCC---cEEEEecCCcc
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~---~~~liDTPGi~ 273 (323)
.++|+++|.+|||||||+|++.+... .....|..+.+ ...+..+. .+.|+||||-.
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~ 66 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTF-SGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQE 66 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC-CCCcCccccceeEEEEEEECCEEEEEEEEeCCCch
Confidence 47899999999999999999997542 11222222222 22233322 46799999953
No 337
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.09 E-value=4.7e-06 Score=85.68 Aligned_cols=59 Identities=25% Similarity=0.411 Sum_probs=45.4
Q ss_pred CccceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe---CC-cEEEEecCCcc
Q 020668 214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GK-DLEFLDSPGII 273 (323)
Q Consensus 214 ~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~-~~~liDTPGi~ 273 (323)
.+++.+|+++|.+|+|||||+|+|.+... .....+|+|.+.....+ +. .+.++||||-.
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v-~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe 146 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKV-AQGEAGGITQHIGAYHVENEDGKMITFLDTPGHE 146 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCc-ccccCCceeecceEEEEEECCCcEEEEEECCCCc
Confidence 34667899999999999999999997643 44556788888654332 33 79999999964
No 338
>PRK12740 elongation factor G; Reviewed
Probab=98.09 E-value=2.6e-05 Score=81.51 Aligned_cols=90 Identities=16% Similarity=0.041 Sum_probs=68.3
Q ss_pred CCcchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--
Q 020668 71 NGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG-- 146 (323)
Q Consensus 71 ~~~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~-- 146 (323)
.+.|-...|++.+++++..+..+...-.. +-++||| .++...+...+..+|++++|+|+..+.......+...+.
T Consensus 33 ~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~-~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~ 111 (668)
T PRK12740 33 TTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGH-VDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKY 111 (668)
T ss_pred ccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCc-HHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHc
Confidence 46677788999999988877766654333 6789999 456677788899999999999998776544444434432
Q ss_pred CCCeEEEEeccCCcc
Q 020668 147 NRKRILVLNREDMIS 161 (323)
Q Consensus 147 ~k~~iiVlNK~DLl~ 161 (323)
++|+++|+||+|+..
T Consensus 112 ~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 112 GVPRIIFVNKMDRAG 126 (668)
T ss_pred CCCEEEEEECCCCCC
Confidence 689999999999863
No 339
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.09 E-value=3.4e-05 Score=71.86 Aligned_cols=88 Identities=14% Similarity=0.011 Sum_probs=63.0
Q ss_pred chhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCC
Q 020668 74 IEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRK 149 (323)
Q Consensus 74 ~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~ 149 (323)
|-...|++...++......+...-.+ +-++||| .++..++...+..+|.+|+|+|+..+.......+.++.. ++|
T Consensus 47 D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~-~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P 125 (267)
T cd04169 47 DWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH-EDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIP 125 (267)
T ss_pred CCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc-hHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCC
Confidence 33466777777777766666554343 6678999 556777888899999999999998765433334444432 789
Q ss_pred eEEEEeccCCccH
Q 020668 150 RILVLNREDMISM 162 (323)
Q Consensus 150 ~iiVlNK~DLl~~ 162 (323)
+++++||+|+...
T Consensus 126 ~iivvNK~D~~~a 138 (267)
T cd04169 126 IITFINKLDREGR 138 (267)
T ss_pred EEEEEECCccCCC
Confidence 9999999998654
No 340
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.08 E-value=3.6e-06 Score=72.43 Aligned_cols=85 Identities=19% Similarity=0.151 Sum_probs=54.8
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh---CCCCeEEEEeccCCccHHhH--HHHHHHHHhhCc-eEEEecCcCCC
Q 020668 116 DQLKLMDVVIEVRDARIPLSTTH-PLMDQWL---GNRKRILVLNREDMISMADR--NAWATYFAKQGT-KVIFSNGQLGM 188 (323)
Q Consensus 116 ~~i~~aDlIl~VvDar~~~~~~~-~~i~~~l---~~k~~iiVlNK~DLl~~~~~--~~~~~~~~~~g~-~vi~iSa~~g~ 188 (323)
..++++|++|+|+|+.++.+... ..+...+ .+.|+++|+||+|+.+.... .+..++.+..+. .++.+||++|.
T Consensus 73 ~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (169)
T cd01892 73 AELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGD 152 (169)
T ss_pred hhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCc
Confidence 44689999999999876532211 1222222 25799999999999654321 111122233443 46899999999
Q ss_pred cchhhhHHHHHh
Q 020668 189 GTMKLSRLAKAL 200 (323)
Q Consensus 189 gi~~L~~~l~~l 200 (323)
|++++.+.+.+.
T Consensus 153 ~v~~lf~~l~~~ 164 (169)
T cd01892 153 SSNELFTKLATA 164 (169)
T ss_pred cHHHHHHHHHHH
Confidence 999987776554
No 341
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.07 E-value=3.9e-06 Score=78.34 Aligned_cols=55 Identities=20% Similarity=0.297 Sum_probs=38.3
Q ss_pred EeeeecCCCCChhhHHHhhhcCcc-----cccc------------CCCCceeeEEEE---EeCCcEEEEecCCcc
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRM-----CPAA------------PRPGVTRVLKWV---RFGKDLEFLDSPGII 273 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~-----~~v~------------~~pgtT~~~~~~---~~~~~~~liDTPGi~ 273 (323)
+|+++|.+|+|||||+|+|+.... ..+. ...|+|.+.... +.+.++.++||||..
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 75 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHV 75 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcH
Confidence 489999999999999999974211 0111 234778774332 235578899999975
No 342
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.07 E-value=1.6e-05 Score=71.30 Aligned_cols=100 Identities=17% Similarity=0.043 Sum_probs=64.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHhC--CCCeEEEEeccCCccHHh--HHHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLG--NRKRILVLNREDMISMAD--RNAWAT 170 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l~--~k~~iiVlNK~DLl~~~~--~~~~~~ 170 (323)
+-++||+ .++.......+..+|.+|+|+|..++.+..+ ..+.+.+. ..++++|.||+|+.+..+ .++..+
T Consensus 56 i~Dt~G~-~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~ 134 (211)
T cd04111 56 LWDTAGQ-ERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEK 134 (211)
T ss_pred EEeCCcc-hhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHH
Confidence 3457887 4455555567899999999999876543222 11111221 345788999999976422 112222
Q ss_pred HHHhhCceEEEecCcCCCcchhhhHHHHHh
Q 020668 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
+.+..+..++.+|+++|.|++++.+.+.+.
T Consensus 135 ~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~ 164 (211)
T cd04111 135 LAKDLGMKYIETSARTGDNVEEAFELLTQE 164 (211)
T ss_pred HHHHhCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 233456789999999999999988877653
No 343
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.07 E-value=8.2e-06 Score=68.97 Aligned_cols=54 Identities=22% Similarity=0.283 Sum_probs=35.1
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCcc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (323)
++|+++|.+|||||||++++...... .....|+.+. ..+.++. .+.|+||||..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTE 60 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCchhheEEEEEEECCEEEEEEEEECCCcc
Confidence 47999999999999999999865432 1122232221 2233332 36789999964
No 344
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.07 E-value=6.4e-06 Score=70.67 Aligned_cols=51 Identities=20% Similarity=0.284 Sum_probs=35.3
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceee--EEEEEe-CCcEEEEecCCcc
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRF-GKDLEFLDSPGII 273 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~--~~~~~~-~~~~~liDTPGi~ 273 (323)
||+++|.+|||||||+|+|.+... .. +.+|.. ...+.. +..+.++||||..
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~--~~~T~~~~~~~~~~~~~~i~l~Dt~G~~ 54 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--MQ--PIPTIGFNVETVEYKNLKFTIWDVGGKH 54 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--CC--cCCcCceeEEEEEECCEEEEEEECCCCh
Confidence 478999999999999999997532 12 233433 222232 3357899999975
No 345
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.07 E-value=2.7e-06 Score=69.87 Aligned_cols=98 Identities=17% Similarity=0.092 Sum_probs=58.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCC-------CCCCcHHHHHHhC-CCCeEEEEeccCCccHHhHHHHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIP-------LSTTHPLMDQWLG-NRKRILVLNREDMISMADRNAWATY 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~-------~~~~~~~i~~~l~-~k~~iiVlNK~DLl~~~~~~~~~~~ 171 (323)
+-++|||. +...........++.++.++|.... .......+..... +.|+++++||+|+............
T Consensus 54 ~~D~~G~~-~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 132 (161)
T TIGR00231 54 LLDTAGQE-DYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAKLKTHVAFL 132 (161)
T ss_pred EEECCCcc-cchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcchhhHHHHHH
Confidence 45678863 2322223334555555555555433 2122222333333 6799999999999875433333333
Q ss_pred HHhhC-ceEEEecCcCCCcchhhhHHHH
Q 020668 172 FAKQG-TKVIFSNGQLGMGTMKLSRLAK 198 (323)
Q Consensus 172 ~~~~g-~~vi~iSa~~g~gi~~L~~~l~ 198 (323)
+...+ ..++++||++|.|+.++.+.+.
T Consensus 133 ~~~~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 133 FAKLNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred HhhccCCceEEeecCCCCCHHHHHHHhh
Confidence 44333 5689999999999998877653
No 346
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.07 E-value=1.6e-05 Score=64.18 Aligned_cols=97 Identities=16% Similarity=-0.059 Sum_probs=65.3
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHH-----H--HhCCCCeEEEEeccCCccHHhHHHH--H-
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMD-----Q--WLGNRKRILVLNREDMISMADRNAW--A- 169 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~-----~--~l~~k~~iiVlNK~DLl~~~~~~~~--~- 169 (323)
+-++||+. .........+..+|.+++|+|+..+....+.... . ...++|+++|+||+|+......... .
T Consensus 49 l~D~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~ 127 (157)
T cd00882 49 IWDTAGQE-RFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAE 127 (157)
T ss_pred EEecCChH-HHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHH
Confidence 45678874 3444456778999999999999876543332211 1 1127899999999999866543332 1
Q ss_pred HHHHhhCceEEEecCcCCCcchhhhHHH
Q 020668 170 TYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (323)
Q Consensus 170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~l 197 (323)
.........++.+|+..+.|+.++.+.+
T Consensus 128 ~~~~~~~~~~~~~s~~~~~~i~~~~~~l 155 (157)
T cd00882 128 QLAKELGVPYFETSAKTGENVEELFEEL 155 (157)
T ss_pred HHHhhcCCcEEEEecCCCCChHHHHHHH
Confidence 1222234678999999999998887664
No 347
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.07 E-value=4.9e-06 Score=78.11 Aligned_cols=58 Identities=24% Similarity=0.416 Sum_probs=34.3
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCcccccc-CCC------CceeeE--EEEEe-----CCcEEEEecCCccC
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAA-PRP------GVTRVL--KWVRF-----GKDLEFLDSPGIIP 274 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~-~~p------gtT~~~--~~~~~-----~~~~~liDTPGi~~ 274 (323)
.++|+++|.+|+|||||||+|++....... ..+ ..|..+ ....+ .-++.++||||+-.
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd 75 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGD 75 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccc
Confidence 578999999999999999999986544332 111 011112 11222 12577999999964
No 348
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.06 E-value=9.6e-06 Score=69.48 Aligned_cols=55 Identities=22% Similarity=0.372 Sum_probs=35.9
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCcc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (323)
++|+++|.+|||||||+|+++.... .....+..+.+. ..+..+. .+.++||||..
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 62 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRF-PERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CCccccceeEEEEEEEEEECCeEEEEEEEeCCChH
Confidence 5799999999999999999986442 212222222221 2233332 47799999964
No 349
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.06 E-value=7.2e-06 Score=74.80 Aligned_cols=58 Identities=31% Similarity=0.507 Sum_probs=46.2
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEE---EEEeCCcEEEEecCCccC
Q 020668 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK---WVRFGKDLEFLDSPGIIP 274 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~---~~~~~~~~~liDTPGi~~ 274 (323)
..-+|+++|+|.||||||+..|...+ ...+...+||.... ..+.+.+++++|-|||+.
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~-SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIie 121 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTH-SEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIE 121 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcch-hhhhceeeeEEEeecceEEecCceEEEecCccccc
Confidence 35689999999999999999999654 36677778887732 233477899999999984
No 350
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.06 E-value=8.8e-06 Score=72.91 Aligned_cols=54 Identities=24% Similarity=0.272 Sum_probs=37.0
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeC----CcEEEEecCCc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG----KDLEFLDSPGI 272 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~----~~~~liDTPGi 272 (323)
+||+++|.+|||||||+|+|.+.. ......|.++.+. ..+.++ -.+.|+||||-
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~-~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~ 60 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEG-FGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQ 60 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCC-CCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCc
Confidence 368999999999999999999754 2333344444443 223332 24679999995
No 351
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.05 E-value=6.6e-06 Score=70.69 Aligned_cols=96 Identities=15% Similarity=-0.023 Sum_probs=60.7
Q ss_pred ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----CCCCeEEEEeccCCccHHh----------
Q 020668 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMAD---------- 164 (323)
Q Consensus 101 ~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~l----~~k~~iiVlNK~DLl~~~~---------- 164 (323)
-++||+ .++.......++.+|++|+|+|..++.+..+. .+...+ .+.|+++|.||+|+.+...
T Consensus 53 ~Dt~G~-~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 131 (173)
T cd04130 53 CDTAGQ-DEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGE 131 (173)
T ss_pred EECCCC-hhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCC
Confidence 345676 33333333456899999999998766443221 122212 2579999999999975321
Q ss_pred ----HHHHHHHHHhhCc-eEEEecCcCCCcchhhhHHH
Q 020668 165 ----RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLA 197 (323)
Q Consensus 165 ----~~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~l 197 (323)
.++..++.++.+. .++.+||++|.|++++.+.+
T Consensus 132 ~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~ 169 (173)
T cd04130 132 KPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTA 169 (173)
T ss_pred CCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHH
Confidence 1122223334454 78999999999999887654
No 352
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.05 E-value=9.9e-06 Score=73.03 Aligned_cols=99 Identities=12% Similarity=-0.052 Sum_probs=63.1
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhCCCCeEEEEeccCCccHHhHHHHHHHHHh
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLGNRKRILVLNREDMISMADRNAWATYFAK 174 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l~~k~~iiVlNK~DLl~~~~~~~~~~~~~~ 174 (323)
+-++||+ .++..........+|.+|+|+|..+..+..+. .+.....+.|+++|.||+|+.......+...+.++
T Consensus 66 i~Dt~G~-~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~ 144 (219)
T PLN03071 66 CWDTAGQ-EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK 144 (219)
T ss_pred EEECCCc-hhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHHHHHHh
Confidence 3346776 44444334557899999999998765433211 11122236799999999998643211112233344
Q ss_pred hCceEEEecCcCCCcchhhhHHHHH
Q 020668 175 QGTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 175 ~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
.+..++.+||++|.|++++.+.+..
T Consensus 145 ~~~~~~e~SAk~~~~i~~~f~~l~~ 169 (219)
T PLN03071 145 KNLQYYEISAKSNYNFEKPFLYLAR 169 (219)
T ss_pred cCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 4577899999999999988766543
No 353
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.05 E-value=1.3e-05 Score=69.56 Aligned_cols=97 Identities=11% Similarity=-0.058 Sum_probs=61.0
Q ss_pred cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----CCCCeEEEEeccCCccHHhHH---------
Q 020668 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMADRN--------- 166 (323)
Q Consensus 102 ~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~l----~~k~~iiVlNK~DLl~~~~~~--------- 166 (323)
+.+|+ .++.......+..+|++|+|+|..++.+..+. .+...+ .+.|+++|.||+|+.+..+..
T Consensus 55 Dt~G~-~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~ 133 (175)
T cd01874 55 DTAGQ-EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQK 133 (175)
T ss_pred ECCCc-cchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCC
Confidence 45666 33433333467899999999998776443222 122222 267999999999986542211
Q ss_pred ----HHHH-HHHhhC-ceEEEecCcCCCcchhhhHHHHH
Q 020668 167 ----AWAT-YFAKQG-TKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 167 ----~~~~-~~~~~g-~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
+..+ ..++.+ ..++.+||++|.|++++.+.+..
T Consensus 134 ~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 134 PITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 172 (175)
T ss_pred CcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHH
Confidence 1111 222344 57899999999999988776543
No 354
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.04 E-value=8.5e-06 Score=70.74 Aligned_cols=54 Identities=22% Similarity=0.293 Sum_probs=35.0
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE-EEEEeC--C--cEEEEecCCc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFG--K--DLEFLDSPGI 272 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~--~--~~~liDTPGi 272 (323)
++|+++|.+|||||||+|++.+... .....|.+..+. ..+... . .+.++||||.
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~-~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~ 59 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKF-PEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQ 59 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcC-CCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCc
Confidence 3699999999999999999997543 222223222222 122222 2 3678999995
No 355
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.04 E-value=7.3e-06 Score=71.81 Aligned_cols=53 Identities=25% Similarity=0.242 Sum_probs=34.2
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeC-C--cEEEEecCCcc
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG-K--DLEFLDSPGII 273 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~-~--~~~liDTPGi~ 273 (323)
+|+++|.+|||||||+|++..... ....+.|+.+. ..+.++ . .+.++||||..
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 58 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHF--VETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQE 58 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CccCCCchHhhEEEEEEECCEEEEEEEEECCCch
Confidence 489999999999999999986432 12233333221 122232 2 37789999963
No 356
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.04 E-value=1e-05 Score=69.38 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=34.1
Q ss_pred EeeeecCCCCChhhHHHhhhcCcc-ccccCCCCceeeEEEEEeC---CcEEEEecCCcc
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFG---KDLEFLDSPGII 273 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~-~~v~~~pgtT~~~~~~~~~---~~~~liDTPGi~ 273 (323)
||+++|.+|||||||+|+++.... ....+..+.......+... -.+.++||||..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE 60 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCCh
Confidence 689999999999999999985432 1112222222211112222 247799999974
No 357
>PLN03108 Rab family protein; Provisional
Probab=98.03 E-value=3.7e-05 Score=68.74 Aligned_cols=96 Identities=9% Similarity=0.015 Sum_probs=62.7
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----CCCCeEEEEeccCCccHHh--HHHHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMAD--RNAWATY 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~l----~~k~~iiVlNK~DLl~~~~--~~~~~~~ 171 (323)
+-++||+ ..+.......+..+|.+|+|+|...+.+..+. .+.... .+.|+++|.||+|+..... ..+..++
T Consensus 59 l~Dt~G~-~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~ 137 (210)
T PLN03108 59 IWDTAGQ-ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQF 137 (210)
T ss_pred EEeCCCc-HHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHH
Confidence 3456776 44555556778899999999998765433221 111111 2578999999999975321 1222233
Q ss_pred HHhhCceEEEecCcCCCcchhhhHH
Q 020668 172 FAKQGTKVIFSNGQLGMGTMKLSRL 196 (323)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~ 196 (323)
.++.+..++.+|++++.|++++.+.
T Consensus 138 ~~~~~~~~~e~Sa~~~~~v~e~f~~ 162 (210)
T PLN03108 138 AKEHGLIFMEASAKTAQNVEEAFIK 162 (210)
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 4445678999999999999986543
No 358
>PLN03110 Rab GTPase; Provisional
Probab=98.03 E-value=1.1e-05 Score=72.60 Aligned_cols=57 Identities=14% Similarity=0.264 Sum_probs=38.6
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceee--EEEEEeCC---cEEEEecCCcc
Q 020668 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~---~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+++|.+... .....|.+..+ ...+.++. .+.|+||||-.
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~-~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~ 72 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEF-CLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcH
Confidence 357899999999999999999997643 22222332223 23344433 57799999964
No 359
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.03 E-value=8.3e-06 Score=69.40 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=35.9
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe-CCcEEEEecCCcc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (323)
+||+++|.+|||||||++++...... ...|.+..+...+.. ...+.++||||..
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~--~~~pt~g~~~~~~~~~~~~~~l~D~~G~~ 55 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVETVEYKNISFTVWDVGGQD 55 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc--ccCCCCCcceEEEEECCEEEEEEECCCCH
Confidence 36999999999999999999654332 223432222322333 3458899999973
No 360
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.02 E-value=3.3e-05 Score=65.78 Aligned_cols=96 Identities=7% Similarity=-0.038 Sum_probs=62.6
Q ss_pred cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHH---h-----CCCCeEEEEeccCCccHHh-HHHHHH
Q 020668 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQW---L-----GNRKRILVLNREDMISMAD-RNAWAT 170 (323)
Q Consensus 102 ~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~---l-----~~k~~iiVlNK~DLl~~~~-~~~~~~ 170 (323)
++||+ .++.......+..+|++++|+|..++.+... ..+..+ . .+.|+++|.||+|+.+... ..+..+
T Consensus 60 D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~ 138 (170)
T cd04116 60 DTAGQ-ERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQA 138 (170)
T ss_pred eCCCh-HHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHH
Confidence 67887 5555555667899999999999876543222 111111 1 1368999999999864321 222333
Q ss_pred HHHhhC-ceEEEecCcCCCcchhhhHHHH
Q 020668 171 YFAKQG-TKVIFSNGQLGMGTMKLSRLAK 198 (323)
Q Consensus 171 ~~~~~g-~~vi~iSa~~g~gi~~L~~~l~ 198 (323)
+.++.+ ..++.+||++|.|+.++.+.+.
T Consensus 139 ~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~ 167 (170)
T cd04116 139 WCRENGDYPYFETSAKDATNVAAAFEEAV 167 (170)
T ss_pred HHHHCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 334455 4689999999999988776543
No 361
>PLN03127 Elongation factor Tu; Provisional
Probab=98.02 E-value=8.6e-06 Score=81.25 Aligned_cols=58 Identities=22% Similarity=0.361 Sum_probs=43.0
Q ss_pred cceEeeeecCCCCChhhHHHhhhcC------cccc---------ccCCCCceeeEEEEEe---CCcEEEEecCCcc
Q 020668 216 RAVRAGIVGYPNVGKSSLINRLLKR------RMCP---------AAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~------~~~~---------v~~~pgtT~~~~~~~~---~~~~~liDTPGi~ 273 (323)
..++|+++|.+|+|||||+++|.+. .... ....+|+|++.....+ +.++.++||||..
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~ 135 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHA 135 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCcc
Confidence 4688999999999999999999732 1111 1223799999765555 3468899999974
No 362
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.02 E-value=2.4e-05 Score=69.51 Aligned_cols=84 Identities=14% Similarity=-0.008 Sum_probs=54.4
Q ss_pred HHHHhhcCeEEEEEeCCCCCCCCcH-H----HHHHh----CCCCeEEEEeccCCccHHh--HHHHHHHHH-hhCceEEEe
Q 020668 115 KDQLKLMDVVIEVRDARIPLSTTHP-L----MDQWL----GNRKRILVLNREDMISMAD--RNAWATYFA-KQGTKVIFS 182 (323)
Q Consensus 115 ~~~i~~aDlIl~VvDar~~~~~~~~-~----i~~~l----~~k~~iiVlNK~DLl~~~~--~~~~~~~~~-~~g~~vi~i 182 (323)
...++.+|++|+|+|+.++.+..+. . +.+.. .+.|+++|.||+|+..... .....+... ..+..++.+
T Consensus 75 ~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~ 154 (198)
T cd04142 75 FRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLEC 154 (198)
T ss_pred HhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEe
Confidence 3457899999999999865433221 1 11111 3579999999999965321 111112222 235678999
Q ss_pred cCcCCCcchhhhHHHH
Q 020668 183 NGQLGMGTMKLSRLAK 198 (323)
Q Consensus 183 Sa~~g~gi~~L~~~l~ 198 (323)
||++|.|+++|.+.+.
T Consensus 155 Sak~g~~v~~lf~~i~ 170 (198)
T cd04142 155 SAKYNWHILLLFKELL 170 (198)
T ss_pred cCCCCCCHHHHHHHHH
Confidence 9999999998876554
No 363
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.01 E-value=1.1e-05 Score=68.21 Aligned_cols=56 Identities=25% Similarity=0.274 Sum_probs=34.7
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCce-eeE--EEEEeC----CcEEEEecCCcc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT-RVL--KWVRFG----KDLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT-~~~--~~~~~~----~~~~liDTPGi~ 273 (323)
++|+++|.+|||||||+|+|.............|+ .+. ..+... -.+.++||||..
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 63 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQE 63 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHH
Confidence 36999999999999999999854221122222222 121 122221 247799999963
No 364
>PRK11058 GTPase HflX; Provisional
Probab=98.01 E-value=2.7e-05 Score=77.21 Aligned_cols=99 Identities=15% Similarity=0.116 Sum_probs=63.5
Q ss_pred cccccchHH-------HHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH----HHHHHhC--CCCeEEEEeccCCccHHhHH
Q 020668 100 VQWYPGHIA-------KTEKELKDQLKLMDVVIEVRDARIPLSTTHP----LMDQWLG--NRKRILVLNREDMISMADRN 166 (323)
Q Consensus 100 i~~~PGh~~-------k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~----~i~~~l~--~k~~iiVlNK~DLl~~~~~~ 166 (323)
+.++||... ...+...+.+..+|++|+|+|+.++....+. .+...+. ++|+++|+||+|+.+....
T Consensus 249 l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~- 327 (426)
T PRK11058 249 LADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP- 327 (426)
T ss_pred EEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH-
Confidence 556677522 1223344567899999999999877543332 1222222 6899999999999754221
Q ss_pred HHHHHHHhhCce-EEEecCcCCCcchhhhHHHHHhh
Q 020668 167 AWATYFAKQGTK-VIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 167 ~~~~~~~~~g~~-vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
. .+. ...+.. ++++||++|.|+++|.+.+.+..
T Consensus 328 ~-~~~-~~~~~~~~v~ISAktG~GIdeL~e~I~~~l 361 (426)
T PRK11058 328 R-IDR-DEENKPIRVWLSAQTGAGIPLLFQALTERL 361 (426)
T ss_pred H-HHH-HhcCCCceEEEeCCCCCCHHHHHHHHHHHh
Confidence 1 111 122333 58899999999999988876543
No 365
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.01 E-value=1.5e-05 Score=69.05 Aligned_cols=98 Identities=15% Similarity=-0.012 Sum_probs=61.7
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----CCCCeEEEEeccCCccHHh---------
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMAD--------- 164 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~l----~~k~~iiVlNK~DLl~~~~--------- 164 (323)
+-++||. .++.......++.+|++|+|+|..++.+..+. .+...+ .+.|+++|.||+||.+...
T Consensus 53 i~Dt~G~-~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~ 131 (174)
T cd01871 53 LWDTAGQ-EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 131 (174)
T ss_pred EEECCCc-hhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhcc
Confidence 3345665 44444444567899999999999875433221 122212 2579999999999964321
Q ss_pred -----HHHHHHHHHhhC-ceEEEecCcCCCcchhhhHHHH
Q 020668 165 -----RNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAK 198 (323)
Q Consensus 165 -----~~~~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~l~ 198 (323)
..+-.+..++.+ ..++.+||++|.|++++.+.+.
T Consensus 132 ~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~ 171 (174)
T cd01871 132 LTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAI 171 (174)
T ss_pred CCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHH
Confidence 011112233344 4788999999999998877654
No 366
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.00 E-value=1.1e-05 Score=68.45 Aligned_cols=56 Identities=21% Similarity=0.356 Sum_probs=36.2
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCcc
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (323)
-.+|+++|.+|||||||++++.+... .....+.++.+. ..+.... .+.++||||..
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 67 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE 67 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH
Confidence 36899999999999999999986432 222223333332 1233332 36789999964
No 367
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.00 E-value=1.1e-05 Score=70.44 Aligned_cols=55 Identities=20% Similarity=0.301 Sum_probs=36.4
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe-CCcEEEEecCCcc
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (323)
.++|+++|.+|||||||++++........ .|.+..+...+.. +..+.++||||..
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~~--~~T~~~~~~~~~~~~~~~~l~D~~G~~ 72 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVTT--IPTIGFNVETVEYKNLKFTMWDVGGQD 72 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcccc--CCccccceEEEEECCEEEEEEECCCCH
Confidence 46899999999999999999975433222 2322222222333 3457899999974
No 368
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.00 E-value=1.1e-05 Score=69.39 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=22.2
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCc
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~ 241 (323)
.+||+++|.+|||||||+|++....
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~ 28 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNK 28 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999998653
No 369
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=97.98 E-value=2.6e-05 Score=82.61 Aligned_cols=81 Identities=21% Similarity=0.084 Sum_probs=58.3
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCeEEEEeccCCccHHhHHHHHHHH-HhhCceEEEecCcCCCcchhhhH
Q 020668 119 KLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYF-AKQGTKVIFSNGQLGMGTMKLSR 195 (323)
Q Consensus 119 ~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~iiVlNK~DLl~~~~~~~~~~~~-~~~g~~vi~iSa~~g~gi~~L~~ 195 (323)
..+|+++.|+|+.+.. ++..+...+ .++|+++|+||+|+.++.......+.+ +++|.+++++|+++|+|+++|++
T Consensus 84 ~~aD~vI~VvDat~le--r~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~ 161 (772)
T PRK09554 84 GDADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGIEALKL 161 (772)
T ss_pred cCCCEEEEEecCCcch--hhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCCCHHHHHH
Confidence 4799999999997642 233332222 278999999999987554333223333 34678899999999999999988
Q ss_pred HHHHhh
Q 020668 196 LAKALA 201 (323)
Q Consensus 196 ~l~~l~ 201 (323)
.+.+..
T Consensus 162 ~I~~~~ 167 (772)
T PRK09554 162 AIDRHQ 167 (772)
T ss_pred HHHHhh
Confidence 877654
No 370
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=97.98 E-value=1.8e-05 Score=67.65 Aligned_cols=97 Identities=15% Similarity=0.075 Sum_probs=59.5
Q ss_pred cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH------HHHHHhCCCCeEEEEeccCCccHHhHH---------
Q 020668 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNREDMISMADRN--------- 166 (323)
Q Consensus 102 ~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~------~i~~~l~~k~~iiVlNK~DLl~~~~~~--------- 166 (323)
++||+ .++.......+..+|++++++|.....+..+. .+.....+.|+++|.||+|+.+.....
T Consensus 55 Dt~G~-~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~ 133 (175)
T cd01870 55 DTAGQ-EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 133 (175)
T ss_pred eCCCc-hhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCC
Confidence 45776 33333333456889999999998754322111 111122378999999999987542211
Q ss_pred -----HHHHHHHhhC-ceEEEecCcCCCcchhhhHHHHH
Q 020668 167 -----AWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 167 -----~~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
+-.+...+.+ ..++.+||++|.|++++.+.+.+
T Consensus 134 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~ 172 (175)
T cd01870 134 PVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATR 172 (175)
T ss_pred CccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHH
Confidence 1111122233 46899999999999998877653
No 371
>PLN03110 Rab GTPase; Provisional
Probab=97.98 E-value=4.6e-05 Score=68.46 Aligned_cols=96 Identities=11% Similarity=0.039 Sum_probs=64.9
Q ss_pred cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--------CCCCeEEEEeccCCccHHhH--HHHHHH
Q 020668 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMISMADR--NAWATY 171 (323)
Q Consensus 102 ~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--------~~k~~iiVlNK~DLl~~~~~--~~~~~~ 171 (323)
++||+ .++.......++.+|.+|+|+|..++.+.. .+..|+ .+.|+++|.||+|+....+. +.....
T Consensus 67 Dt~G~-~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l 143 (216)
T PLN03110 67 DTAGQ-ERYRAITSAYYRGAVGALLVYDITKRQTFD--NVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQAL 143 (216)
T ss_pred ECCCc-HHHHHHHHHHhCCCCEEEEEEECCChHHHH--HHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHH
Confidence 56776 556666667789999999999997654322 222222 15789999999998643221 111122
Q ss_pred HHhhCceEEEecCcCCCcchhhhHHHHHh
Q 020668 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
....+..++.+||++|.|++++.+.+...
T Consensus 144 ~~~~~~~~~e~SA~~g~~v~~lf~~l~~~ 172 (216)
T PLN03110 144 AEKEGLSFLETSALEATNVEKAFQTILLE 172 (216)
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 23346789999999999999987776443
No 372
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.98 E-value=1.3e-05 Score=70.89 Aligned_cols=55 Identities=20% Similarity=0.336 Sum_probs=35.9
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeC--C--cEEEEecCCcc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG--K--DLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~--~--~~~liDTPGi~ 273 (323)
++|+++|.+|||||||+|++++... .....|.+..+. ..+..+ . .+.++||||-.
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~-~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~ 61 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIF-SQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE 61 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCch
Confidence 3689999999999999999997532 222223222232 233333 2 36799999963
No 373
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=97.98 E-value=2.1e-05 Score=67.49 Aligned_cols=97 Identities=10% Similarity=0.035 Sum_probs=60.6
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----CCCCeEEEEeccCCccHHhHHHHHHH-
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATY- 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l-----~~k~~iiVlNK~DLl~~~~~~~~~~~- 171 (323)
+-++||+ .++.......+..+|++++|+|+.+..+..+ ..+..++ .++|+++|+||+|+.......+..+.
T Consensus 47 i~D~~G~-~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~ 125 (167)
T cd04161 47 IFDLGGG-ANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYL 125 (167)
T ss_pred EEECCCc-HHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhc
Confidence 5567888 4455555678899999999999886542211 1222222 26799999999998654422232222
Q ss_pred ----HH-hhC--ceEEEecCcCC------CcchhhhHHH
Q 020668 172 ----FA-KQG--TKVIFSNGQLG------MGTMKLSRLA 197 (323)
Q Consensus 172 ----~~-~~g--~~vi~iSa~~g------~gi~~L~~~l 197 (323)
+. +.+ ..++.+||++| .|+.+-.+.|
T Consensus 126 ~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl 164 (167)
T cd04161 126 SLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWL 164 (167)
T ss_pred CcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHH
Confidence 11 112 35677999998 6766554443
No 374
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=97.97 E-value=1.1e-05 Score=68.82 Aligned_cols=98 Identities=12% Similarity=-0.035 Sum_probs=59.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHH----hCCCCeEEEEeccCCccHHhH--------
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW----LGNRKRILVLNREDMISMADR-------- 165 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~----l~~k~~iiVlNK~DLl~~~~~-------- 165 (323)
+-++||+ ..+...-......+|++++|+|..++.+..+. .+... ..+.|+++|.||+|+.+....
T Consensus 52 i~Dt~G~-~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~ 130 (174)
T cd04135 52 LYDTAGQ-EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMK 130 (174)
T ss_pred EEeCCCc-ccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhcc
Confidence 3356776 33333223446789999999998765432211 11222 236899999999998653211
Q ss_pred ------HHHHHHHHhhC-ceEEEecCcCCCcchhhhHHHH
Q 020668 166 ------NAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAK 198 (323)
Q Consensus 166 ------~~~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~l~ 198 (323)
..-....++.+ ..++.+||++|.|++++.+.+.
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~ 170 (174)
T cd04135 131 EKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAI 170 (174)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHH
Confidence 11112223345 3688999999999998876543
No 375
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.97 E-value=1.3e-05 Score=64.34 Aligned_cols=56 Identities=25% Similarity=0.307 Sum_probs=36.1
Q ss_pred EeeeecCCCCChhhHHHhhhcCccc---cccCCCCceeeEEEEEeC---CcEEEEecCCccC
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMC---PAAPRPGVTRVLKWVRFG---KDLEFLDSPGIIP 274 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~---~v~~~pgtT~~~~~~~~~---~~~~liDTPGi~~ 274 (323)
||+++|.+||||||||++|.+.... ......+.|......... ..+.+.|++|-..
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~ 62 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEE 62 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHC
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccce
Confidence 5899999999999999999987654 122233444433333221 2377899999853
No 376
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.97 E-value=3.4e-05 Score=70.46 Aligned_cols=98 Identities=12% Similarity=0.027 Sum_probs=64.4
Q ss_pred cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH------HHHHHhCCCCeEEEEeccCCccH------------H
Q 020668 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNREDMISM------------A 163 (323)
Q Consensus 102 ~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~------~i~~~l~~k~~iiVlNK~DLl~~------------~ 163 (323)
+++|. .++..........+|++|+|+|..+..+..+. ++.....+.|+++|.||+||... .
T Consensus 67 DTaG~-e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~ 145 (232)
T cd04174 67 DTSGS-PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQA 145 (232)
T ss_pred eCCCc-hhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCC
Confidence 45664 55555455678999999999999876544321 12222236789999999998531 0
Q ss_pred --hHHHHHHHHHhhCc-eEEEecCcCCC-cchhhhHHHHHh
Q 020668 164 --DRNAWATYFAKQGT-KVIFSNGQLGM-GTMKLSRLAKAL 200 (323)
Q Consensus 164 --~~~~~~~~~~~~g~-~vi~iSa~~g~-gi~~L~~~l~~l 200 (323)
..++..++.++.+. .++.+||++|. |++++.+.+...
T Consensus 146 ~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~ 186 (232)
T cd04174 146 PISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLL 186 (232)
T ss_pred cCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHH
Confidence 11233344455666 58899999997 799887765543
No 377
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=97.97 E-value=4.4e-05 Score=65.32 Aligned_cols=101 Identities=16% Similarity=0.069 Sum_probs=59.5
Q ss_pred cccccchHHHHHH-HHHHHHhhcCeEEEEEeCCCCCCCCcH-HHH----HHh--CCCCeEEEEeccCCccHHhH-HHHH-
Q 020668 100 VQWYPGHIAKTEK-ELKDQLKLMDVVIEVRDARIPLSTTHP-LMD----QWL--GNRKRILVLNREDMISMADR-NAWA- 169 (323)
Q Consensus 100 i~~~PGh~~k~~~-~l~~~i~~aDlIl~VvDar~~~~~~~~-~i~----~~l--~~k~~iiVlNK~DLl~~~~~-~~~~- 169 (323)
+-+.||+ ..+.+ .....++++|++++|+|+.++.+..+. .+. ... .+.|+++|.||+|+....+. .+..
T Consensus 55 i~Dt~G~-~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~ 133 (170)
T cd04115 55 LWDTAGQ-ERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQ 133 (170)
T ss_pred EEeCCCh-HHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHH
Confidence 4456777 33433 344567899999999999765433221 111 111 25799999999998654321 1122
Q ss_pred HHHHhhCceEEEecCcCCCcchhhhHHHHHhh
Q 020668 170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
++.......++.+||+++.+...+.+.+..+.
T Consensus 134 ~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~ 165 (170)
T cd04115 134 RFADAHSMPLFETSAKDPSENDHVEAIFMTLA 165 (170)
T ss_pred HHHHHcCCcEEEEeccCCcCCCCHHHHHHHHH
Confidence 22233446789999999544444444444444
No 378
>PRK13351 elongation factor G; Reviewed
Probab=97.97 E-value=6.9e-05 Score=78.68 Aligned_cols=89 Identities=15% Similarity=0.106 Sum_probs=66.0
Q ss_pred CcchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--C
Q 020668 72 GSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N 147 (323)
Q Consensus 72 ~~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~ 147 (323)
+.|-...|++.+.++...+..+...... +-++||| .++...+...+..+|.+++|+|+..+.......+...+. +
T Consensus 47 ~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~-~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~ 125 (687)
T PRK13351 47 VTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGH-IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYG 125 (687)
T ss_pred cCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCc-HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcC
Confidence 4555567888888888776655444333 6688999 557778888999999999999998876554444444433 7
Q ss_pred CCeEEEEeccCCcc
Q 020668 148 RKRILVLNREDMIS 161 (323)
Q Consensus 148 k~~iiVlNK~DLl~ 161 (323)
+|+++++||+|+..
T Consensus 126 ~p~iiviNK~D~~~ 139 (687)
T PRK13351 126 IPRLIFINKMDRVG 139 (687)
T ss_pred CCEEEEEECCCCCC
Confidence 89999999999875
No 379
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=97.97 E-value=1.5e-05 Score=69.01 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=37.3
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe-CCcEEEEecCCcc
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (323)
.++|+++|.+|||||||++++..... ....|.+..+...+.. ...+.++||||..
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~ 68 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGES--VTTIPTIGFNVETVTYKNISFTVWDVGGQD 68 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC--CCcCCccccceEEEEECCEEEEEEECCCCh
Confidence 46899999999999999999964332 2233433333333333 3357899999974
No 380
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.96 E-value=5.1e-06 Score=86.31 Aligned_cols=27 Identities=37% Similarity=0.378 Sum_probs=23.3
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCcc
Q 020668 216 RAVRAGIVGYPNVGKSSLINRLLKRRM 242 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~ 242 (323)
..++|+++|.+|+|||||+|+|+....
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~ 49 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSK 49 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhC
Confidence 357899999999999999999996543
No 381
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=97.96 E-value=1.4e-05 Score=68.20 Aligned_cols=53 Identities=25% Similarity=0.276 Sum_probs=33.8
Q ss_pred eeeecCCCCChhhHHHhhhcCccccccCCCCceeeE-EEEEeCC---cEEEEecCCcc
Q 020668 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 220 v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~~---~~~liDTPGi~ 273 (323)
|+++|.+|||||||+|++.+... .....|.+.... ..+.++. .+.++||||..
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 57 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF-PEDYVPTVFENYSADVEVDGKPVELGLWDTAGQE 57 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC-CCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCc
Confidence 57999999999999999997543 222223222111 1223332 37799999964
No 382
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.95 E-value=1.3e-05 Score=71.80 Aligned_cols=55 Identities=29% Similarity=0.453 Sum_probs=36.8
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEE--EEEe--CC--cEEEEecCCcc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF--GK--DLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~--~~--~~~liDTPGi~ 273 (323)
+||+++|.+|||||||+|++.+...... ..|.++.+.. .+.. +. .+.++||||-.
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~-~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~ 63 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEV-SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE 63 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-CCceeceEEEEEEEEECCCCEEEEEEEeCCcch
Confidence 5799999999999999999997653222 2233333321 2222 22 47799999963
No 383
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=97.95 E-value=1.1e-05 Score=68.44 Aligned_cols=54 Identities=28% Similarity=0.421 Sum_probs=35.7
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceee--EEEEEeCC---cEEEEecCCccC
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGIIP 274 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~---~~~liDTPGi~~ 274 (323)
+|+++|.+|||||||+++++.... ....+.++.. ...+.++. .+.++||||...
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 59 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF--IGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQ 59 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc--ccccCCChHHhceEEEEECCEEEEEEEEECCCCcc
Confidence 489999999999999999986432 2333344322 12223332 367999999863
No 384
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=97.95 E-value=5e-05 Score=65.37 Aligned_cols=101 Identities=12% Similarity=-0.045 Sum_probs=64.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHh--CCCCeEEEEeccCCccHHh--HHHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWL--GNRKRILVLNREDMISMAD--RNAWAT 170 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l--~~k~~iiVlNK~DLl~~~~--~~~~~~ 170 (323)
+-+.||+ .++...-......+|.+++++|..+..+... ..+.+.. .+.|+++|.||+|+..... ......
T Consensus 53 l~D~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~ 131 (180)
T cd04137 53 IVDTAGQ-DEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKE 131 (180)
T ss_pred EEECCCh-HhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHH
Confidence 3457887 3444444466788999999999875432111 1122222 2569999999999874322 112222
Q ss_pred HHHhhCceEEEecCcCCCcchhhhHHHHHhh
Q 020668 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
.....+..++.+|++++.|+.++.+.+.+..
T Consensus 132 ~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (180)
T cd04137 132 LAESWGAAFLESSARENENVEEAFELLIEEI 162 (180)
T ss_pred HHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3334456789999999999999877765543
No 385
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.95 E-value=6.4e-05 Score=73.91 Aligned_cols=116 Identities=18% Similarity=0.153 Sum_probs=84.7
Q ss_pred cchhhHhhhcccccCcc--eeeeeccccccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHH-HhC-CC
Q 020668 73 SIEAYEEECDWADLDAD--LYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQ-WLG-NR 148 (323)
Q Consensus 73 ~~~~~~e~e~~~~~~~~--~~~~~~~l~~i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~-~l~-~k 148 (323)
+|...-|+|.++++-+. -+.|....--|-++||| +.+--+.++.++.+|-+++||||..++..--.++.. .+. +-
T Consensus 43 MDSnDlEkERGITILaKnTav~~~~~~INIvDTPGH-ADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL 121 (603)
T COG1217 43 MDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGH-ADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGL 121 (603)
T ss_pred cCccchhhhcCcEEEeccceeecCCeEEEEecCCCc-CCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCC
Confidence 45555699999987554 34444434448899999 788899999999999999999999888766555433 333 77
Q ss_pred CeEEEEeccCCccH---HhHHHHHHHHHhhC-------ceEEEecCcCCCc
Q 020668 149 KRILVLNREDMISM---ADRNAWATYFAKQG-------TKVIFSNGQLGMG 189 (323)
Q Consensus 149 ~~iiVlNK~DLl~~---~~~~~~~~~~~~~g-------~~vi~iSa~~g~g 189 (323)
+.|+|+||+|.... .-+.+..+.|.+++ +++++-|++.|..
T Consensus 122 ~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a 172 (603)
T COG1217 122 KPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTA 172 (603)
T ss_pred CcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCcee
Confidence 89999999998643 23445555565554 6789999987753
No 386
>PLN03108 Rab family protein; Provisional
Probab=97.95 E-value=2.1e-05 Score=70.34 Aligned_cols=57 Identities=25% Similarity=0.358 Sum_probs=37.6
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccc-cCCCCceeeEEEEEeCC---cEEEEecCCcc
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v-~~~pgtT~~~~~~~~~~---~~~liDTPGi~ 273 (323)
.++|+++|.+|||||||+|+|.+...... .+..|.+.....+.++. .+.++||||..
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~ 66 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcH
Confidence 46899999999999999999997543222 12223333233344432 46799999964
No 387
>PRK00049 elongation factor Tu; Reviewed
Probab=97.94 E-value=1.3e-05 Score=78.72 Aligned_cols=57 Identities=25% Similarity=0.367 Sum_probs=42.5
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCc------cccc---------cCCCCceeeEEEEEe---CCcEEEEecCCc
Q 020668 216 RAVRAGIVGYPNVGKSSLINRLLKRR------MCPA---------APRPGVTRVLKWVRF---GKDLEFLDSPGI 272 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~------~~~v---------~~~pgtT~~~~~~~~---~~~~~liDTPGi 272 (323)
..++|+++|.+|+|||||+++|++.. .... ....|+|++.....+ +..+.++||||.
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~ 85 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGH 85 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCH
Confidence 46889999999999999999998621 1011 125789999765554 456889999996
No 388
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=97.93 E-value=3.8e-05 Score=65.29 Aligned_cols=95 Identities=13% Similarity=0.071 Sum_probs=62.2
Q ss_pred cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHH-------hC-CCCeEEEEeccCCccHHhH--HHHHHH
Q 020668 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW-------LG-NRKRILVLNREDMISMADR--NAWATY 171 (323)
Q Consensus 102 ~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~-------l~-~k~~iiVlNK~DLl~~~~~--~~~~~~ 171 (323)
+++|. .++..........+|++++|+|..+..+..+ +..| .. +.|+++|.||+|+...... .+-...
T Consensus 55 D~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~--~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~ 131 (161)
T cd04117 55 DTAGQ-ERYQTITKQYYRRAQGIFLVYDISSERSYQH--IMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKL 131 (161)
T ss_pred eCCCc-HhHHhhHHHHhcCCcEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHH
Confidence 45665 4455556667899999999999876533221 2221 11 4689999999999654321 122222
Q ss_pred HHhhCceEEEecCcCCCcchhhhHHHHH
Q 020668 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
.+..+..++.+||++|.|++++.+.|.+
T Consensus 132 ~~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 159 (161)
T cd04117 132 AKEYGMDFFETSACTNSNIKESFTRLTE 159 (161)
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHHHh
Confidence 3334567899999999999988776543
No 389
>PTZ00369 Ras-like protein; Provisional
Probab=97.93 E-value=2.1e-05 Score=68.81 Aligned_cols=56 Identities=23% Similarity=0.262 Sum_probs=35.0
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCcccc-ccCCCCceeeEEEEEeCC---cEEEEecCCcc
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~-v~~~pgtT~~~~~~~~~~---~~~liDTPGi~ 273 (323)
.++|+++|.+|||||||++++.+..... ..+..|.+. ...+.++. .+.++||||.-
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~ 64 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQE 64 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCc
Confidence 4689999999999999999999754211 111112111 11122322 36689999964
No 390
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=97.93 E-value=2.2e-05 Score=66.81 Aligned_cols=54 Identities=19% Similarity=0.303 Sum_probs=35.7
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCcc
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (323)
+|+++|.+|||||||+++++.... .....|....+. ..+..+. .+.++||||-.
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 60 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEF-HSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 689999999999999999986543 222233333332 2233332 46789999963
No 391
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=97.92 E-value=3.5e-05 Score=67.68 Aligned_cols=98 Identities=14% Similarity=-0.004 Sum_probs=62.7
Q ss_pred ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH--HH----HHhCCCCeEEEEeccCCccHHh-H--------
Q 020668 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MD----QWLGNRKRILVLNREDMISMAD-R-------- 165 (323)
Q Consensus 101 ~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~--i~----~~l~~k~~iiVlNK~DLl~~~~-~-------- 165 (323)
-+++|+ .++..........+|++|+|+|..++.+..+.. +. ....+.|+++|.||+||.+... .
T Consensus 56 ~Dt~G~-e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~ 134 (191)
T cd01875 56 WDTAGQ-EEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQ 134 (191)
T ss_pred EECCCc-hhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccC
Confidence 345777 455544445678999999999987665432221 11 1123679999999999964321 0
Q ss_pred -----HHHHHHHHhhC-ceEEEecCcCCCcchhhhHHHHH
Q 020668 166 -----NAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 166 -----~~~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
.+-.++.++.+ ..++.+||++|.|++++.+.+.+
T Consensus 135 ~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~ 174 (191)
T cd01875 135 APITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVR 174 (191)
T ss_pred CCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHH
Confidence 11112223345 47899999999999988776654
No 392
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=97.92 E-value=1.9e-05 Score=68.88 Aligned_cols=97 Identities=12% Similarity=-0.061 Sum_probs=62.8
Q ss_pred cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----CCCCeEEEEeccCCccHH------------
Q 020668 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMA------------ 163 (323)
Q Consensus 102 ~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~l----~~k~~iiVlNK~DLl~~~------------ 163 (323)
+++|+ .++.......++.+|.+|+|+|..+..+..+. .....+ .+.|+++|.||+||.+..
T Consensus 55 Dt~G~-~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v 133 (176)
T cd04133 55 DTAGQ-EDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPI 133 (176)
T ss_pred ECCCC-ccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCC
Confidence 45665 44544445568999999999998766554332 111112 257899999999996431
Q ss_pred hHHHHHHHHHhhCc-eEEEecCcCCCcchhhhHHHHH
Q 020668 164 DRNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 164 ~~~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
..++..++.++.+. .++.+||++|.|++++.+.+.+
T Consensus 134 ~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~ 170 (176)
T cd04133 134 TTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIK 170 (176)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHH
Confidence 11122223334455 5889999999999988776554
No 393
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=97.92 E-value=5e-05 Score=75.72 Aligned_cols=95 Identities=20% Similarity=0.142 Sum_probs=61.4
Q ss_pred cccccchHH--H-----HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-CCCCeEEEEeccCCccHHhHHHHHHH
Q 020668 100 VQWYPGHIA--K-----TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-GNRKRILVLNREDMISMADRNAWATY 171 (323)
Q Consensus 100 i~~~PGh~~--k-----~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l-~~k~~iiVlNK~DLl~~~~~~~~~~~ 171 (323)
+-++||... . ..+.....++.+|++++|+|+..+.+..+..+.... .++|+++|+||+|+.+. +... +
T Consensus 255 l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~~l~~~~~~~~piIlV~NK~Dl~~~-~~~~---~ 330 (442)
T TIGR00450 255 LLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDFLIIDLNKSKKPFILVLNKIDLKIN-SLEF---F 330 (442)
T ss_pred EeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHHHHHHHhhCCCCEEEEEECccCCCc-chhh---h
Confidence 556777621 1 123345678999999999999877665444222222 27899999999999754 2221 2
Q ss_pred HHhhCceEEEecCcCCCcchhhhHHHHH
Q 020668 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
....+..++.+|+++ .|++++.+.+.+
T Consensus 331 ~~~~~~~~~~vSak~-~gI~~~~~~L~~ 357 (442)
T TIGR00450 331 VSSKVLNSSNLSAKQ-LKIKALVDLLTQ 357 (442)
T ss_pred hhhcCCceEEEEEec-CCHHHHHHHHHH
Confidence 233456678899997 577776655544
No 394
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=97.92 E-value=1.5e-05 Score=82.24 Aligned_cols=80 Identities=21% Similarity=0.144 Sum_probs=56.1
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHH-HHHh-CCCCeEEEEeccCCccHHhHHHHHHHH-HhhCceEEEecCcCCCcchhhhH
Q 020668 119 KLMDVVIEVRDARIPLSTTHPLM-DQWL-GNRKRILVLNREDMISMADRNAWATYF-AKQGTKVIFSNGQLGMGTMKLSR 195 (323)
Q Consensus 119 ~~aDlIl~VvDar~~~~~~~~~i-~~~l-~~k~~iiVlNK~DLl~~~~~~~~~~~~-~~~g~~vi~iSa~~g~gi~~L~~ 195 (323)
+.+|+++.|+|+.... ++..+ .+.. .++|+++|+||+|+.+........+.+ +.+|.+++++||++|.|++++.+
T Consensus 71 ~~aDvvI~VvDat~le--r~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~ 148 (591)
T TIGR00437 71 EKPDLVVNVVDASNLE--RNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKD 148 (591)
T ss_pred cCCCEEEEEecCCcch--hhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHH
Confidence 4789999999997632 22222 2222 278999999999997554322222233 34578899999999999999988
Q ss_pred HHHHh
Q 020668 196 LAKAL 200 (323)
Q Consensus 196 ~l~~l 200 (323)
.+.+.
T Consensus 149 ~i~~~ 153 (591)
T TIGR00437 149 AIRKA 153 (591)
T ss_pred HHHHH
Confidence 87654
No 395
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=97.91 E-value=1.9e-05 Score=68.06 Aligned_cols=54 Identities=24% Similarity=0.294 Sum_probs=35.9
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEE--EEEeC---CcEEEEecCCcc
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG---KDLEFLDSPGII 273 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~---~~~~liDTPGi~ 273 (323)
+|++||.+|||||||+|++.+..- .-...|.+..+.. .+..+ ..+.++||||..
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF-DKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQE 60 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChH
Confidence 589999999999999999997532 2222333333332 22222 257899999964
No 396
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=5e-05 Score=72.14 Aligned_cols=99 Identities=19% Similarity=0.225 Sum_probs=70.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHhCCCCeEEEEeccCCccHHhHHHHHHH------
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLGNRKRILVLNREDMISMADRNAWATY------ 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l~~k~~iiVlNK~DLl~~~~~~~~~~~------ 171 (323)
..++||| +...|.+.-.+.-.|+.++|+|+..+...- +-.+...+.-++.++|+||+|+++..++...++.
T Consensus 74 lvDCPGH-asLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~ 152 (522)
T KOG0461|consen 74 LVDCPGH-ASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVR 152 (522)
T ss_pred EEeCCCc-HHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHHH
Confidence 6789999 667888888888899999999997765332 2233333446889999999999987654333222
Q ss_pred --HHhhC----ceEEEecCcCC----CcchhhhHHHHH
Q 020668 172 --FAKQG----TKVIFSNGQLG----MGTMKLSRLAKA 199 (323)
Q Consensus 172 --~~~~g----~~vi~iSa~~g----~gi~~L~~~l~~ 199 (323)
+++.+ .+++.+|++.| +++.+|++.+.+
T Consensus 153 KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s 190 (522)
T KOG0461|consen 153 KTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALES 190 (522)
T ss_pred HHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHH
Confidence 22222 46899999999 777777777654
No 397
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=97.91 E-value=2.6e-05 Score=66.69 Aligned_cols=54 Identities=24% Similarity=0.274 Sum_probs=34.0
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceee-EEEEEeC-C--cEEEEecCCcc
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-LKWVRFG-K--DLEFLDSPGII 273 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~-~~~~~~~-~--~~~liDTPGi~ 273 (323)
+|+++|.+|||||||++++.+.... ....|.+... ...+.++ . .+.++||||.-
T Consensus 3 ki~iiG~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (175)
T cd01870 3 KLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVFENYVADIEVDGKQVELALWDTAGQE 60 (175)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccccceEEEEEECCEEEEEEEEeCCCch
Confidence 6899999999999999999975421 1112211111 1122332 2 46799999963
No 398
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.91 E-value=1e-05 Score=75.01 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=19.8
Q ss_pred EeeeecCCCCChhhHHHhhhcC
Q 020668 219 RAGIVGYPNVGKSSLINRLLKR 240 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~ 240 (323)
+|+++|.+|+|||||+|+|+..
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~ 22 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYA 22 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999999999999854
No 399
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.90 E-value=1.8e-05 Score=69.86 Aligned_cols=53 Identities=28% Similarity=0.395 Sum_probs=35.3
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCcc
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (323)
||+++|.+|||||||+|+++..... .....|+.+. ..+.++. .+.++||||..
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~ 58 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSY 58 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchhhheeEEEEECCEEEEEEEEECCCch
Confidence 4899999999999999999975432 2223333221 2233332 57799999974
No 400
>PRK09866 hypothetical protein; Provisional
Probab=97.90 E-value=2.2e-05 Score=80.43 Aligned_cols=56 Identities=23% Similarity=0.297 Sum_probs=44.1
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe----CCcEEEEecCCccC
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGIIP 274 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~----~~~~~liDTPGi~~ 274 (323)
+.++++|.+|+|||||+|+|++...+.+++.+.||.-. ++.. .......||.|++.
T Consensus 70 ~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~lpT-~i~~~pg~re~~L~~dtvgfI~ 129 (741)
T PRK09866 70 MVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPT-LIRHTPGQKEPVLHFSHVAPID 129 (741)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCccccCCCcccccccE-EEEecCCcCceeeecCCccchH
Confidence 56999999999999999999999988888888777733 3332 22355678888875
No 401
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.90 E-value=7.9e-05 Score=69.13 Aligned_cols=116 Identities=15% Similarity=0.036 Sum_probs=70.9
Q ss_pred hhHhhhcccccCcceeeeecc--ccccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCeE
Q 020668 76 AYEEECDWADLDADLYYWTKS--LRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRI 151 (323)
Q Consensus 76 ~~~e~e~~~~~~~~~~~~~~~--l~~i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~i 151 (323)
...|++.+.++......+... .-.+.++||| ..+...+...+..+|.+++|+|+..+.......+.+.+. ++|.+
T Consensus 42 ~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~-~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~i 120 (268)
T cd04170 42 DPEEIKRKMSISTSVAPLEWKGHKINLIDTPGY-ADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRI 120 (268)
T ss_pred CHHHHhhcccccceeEEEEECCEEEEEEECcCH-HHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE
Confidence 344556566665544444322 2236789999 456677888899999999999998775544334433332 78999
Q ss_pred EEEeccCCccHHhHHHHHHHHHh-hCceEEEe--cCcCCCcchhh
Q 020668 152 LVLNREDMISMADRNAWATYFAK-QGTKVIFS--NGQLGMGTMKL 193 (323)
Q Consensus 152 iVlNK~DLl~~~~~~~~~~~~~~-~g~~vi~i--Sa~~g~gi~~L 193 (323)
+++||+|+.... ..+..+.+++ ++..++++ ....+.++..+
T Consensus 121 ivvNK~D~~~~~-~~~~~~~l~~~~~~~~~~~~ip~~~~~~~~~~ 164 (268)
T cd04170 121 IFINKMDRERAD-FDKTLAALQEAFGRPVVPLQLPIGEGDDFKGV 164 (268)
T ss_pred EEEECCccCCCC-HHHHHHHHHHHhCCCeEEEEecccCCCceeEE
Confidence 999999987543 2223333433 34444433 34455554433
No 402
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=97.89 E-value=1.5e-05 Score=81.95 Aligned_cols=54 Identities=28% Similarity=0.416 Sum_probs=40.3
Q ss_pred EeeeecCCCCChhhHHHhhhcCc--cccccCCCCceeeEEEEEe---CCcEEEEecCCc
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRR--MCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGI 272 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~--~~~v~~~pgtT~~~~~~~~---~~~~~liDTPGi 272 (323)
.|+++|.+|+|||||+|+|.+.. .......+|+|.+.....+ +..+.++||||.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGh 60 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGH 60 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCH
Confidence 58999999999999999999753 1222335788988654332 346789999994
No 403
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.89 E-value=4.1e-05 Score=66.73 Aligned_cols=97 Identities=12% Similarity=0.005 Sum_probs=61.5
Q ss_pred cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HH----HHHhCCCCeEEEEeccCCccH-------------
Q 020668 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LM----DQWLGNRKRILVLNREDMISM------------- 162 (323)
Q Consensus 102 ~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~--~i----~~~l~~k~~iiVlNK~DLl~~------------- 162 (323)
+++|+ .++..........+|++|+|+|..++.+..+. .+ .+...+.|+++|.||+||.+.
T Consensus 55 Dt~G~-~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~ 133 (178)
T cd04131 55 DTSGS-PYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQA 133 (178)
T ss_pred ECCCc-hhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCC
Confidence 45665 44444444567899999999999766543321 11 111236789999999998531
Q ss_pred -HhHHHHHHHHHhhCc-eEEEecCcCCCc-chhhhHHHHH
Q 020668 163 -ADRNAWATYFAKQGT-KVIFSNGQLGMG-TMKLSRLAKA 199 (323)
Q Consensus 163 -~~~~~~~~~~~~~g~-~vi~iSa~~g~g-i~~L~~~l~~ 199 (323)
-..++..++.++.+. .++.+||++|.| ++++...+.+
T Consensus 134 ~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 134 PVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred CCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHH
Confidence 011222233445564 689999999995 9888766544
No 404
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=97.89 E-value=4.3e-05 Score=65.20 Aligned_cols=98 Identities=11% Similarity=-0.043 Sum_probs=62.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHh--CCCCeEEEEeccCCccHHh--HHHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWL--GNRKRILVLNREDMISMAD--RNAWAT 170 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l--~~k~~iiVlNK~DLl~~~~--~~~~~~ 170 (323)
+-+.||+ .++.......+..+|.+++|+|..++.+... ..+.+.. .+.|++++.||+|+.+... ..+...
T Consensus 53 i~Dt~G~-~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~ 131 (168)
T cd04177 53 ILDTAGT-EQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVS 131 (168)
T ss_pred EEeCCCc-ccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHH
Confidence 3467887 4455555667889999999999876532211 1121211 2579999999999865432 112222
Q ss_pred HHHhhC-ceEEEecCcCCCcchhhhHHHH
Q 020668 171 YFAKQG-TKVIFSNGQLGMGTMKLSRLAK 198 (323)
Q Consensus 171 ~~~~~g-~~vi~iSa~~g~gi~~L~~~l~ 198 (323)
..++.+ ..++.+||++|.|++++.+.+.
T Consensus 132 ~~~~~~~~~~~~~SA~~~~~i~~~f~~i~ 160 (168)
T cd04177 132 LSQQWGNVPFYETSARKRTNVDEVFIDLV 160 (168)
T ss_pred HHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence 223344 5789999999999988766543
No 405
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=97.88 E-value=2e-05 Score=71.12 Aligned_cols=55 Identities=25% Similarity=0.227 Sum_probs=34.6
Q ss_pred EeeeecCCCCChhhHHHhhhcCccc-cccCCCCc-eeeEEEEEe---CCcEEEEecCCcc
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGV-TRVLKWVRF---GKDLEFLDSPGII 273 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~-~v~~~pgt-T~~~~~~~~---~~~~~liDTPGi~ 273 (323)
+|+++|.+|||||||+|++...... .....++. ......+.+ ...+.++||||..
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~ 61 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE 61 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc
Confidence 6999999999999999999754332 11111111 111222332 2357899999985
No 406
>PRK12736 elongation factor Tu; Reviewed
Probab=97.87 E-value=1.9e-05 Score=77.54 Aligned_cols=57 Identities=23% Similarity=0.357 Sum_probs=42.4
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCc------cccc---------cCCCCceeeEEEEEe---CCcEEEEecCCc
Q 020668 216 RAVRAGIVGYPNVGKSSLINRLLKRR------MCPA---------APRPGVTRVLKWVRF---GKDLEFLDSPGI 272 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~------~~~v---------~~~pgtT~~~~~~~~---~~~~~liDTPGi 272 (323)
..++|+++|.+++|||||+++|++.. .... ....|+|.+.....+ +..+.++||||.
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh 85 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGH 85 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCH
Confidence 46889999999999999999998621 1111 115689999765554 456889999995
No 407
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.86 E-value=2.3e-05 Score=76.88 Aligned_cols=58 Identities=21% Similarity=0.343 Sum_probs=42.4
Q ss_pred cceEeeeecCCCCChhhHHHhhhcC------cccc---------ccCCCCceeeEEEEEe---CCcEEEEecCCcc
Q 020668 216 RAVRAGIVGYPNVGKSSLINRLLKR------RMCP---------AAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~------~~~~---------v~~~pgtT~~~~~~~~---~~~~~liDTPGi~ 273 (323)
..++|+++|..|+|||||+++|++. .... -....|+|.+...+.+ +..+.|+||||..
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH
Confidence 3578999999999999999999832 1111 1123689999765555 3458899999963
No 408
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.86 E-value=2.6e-05 Score=68.31 Aligned_cols=98 Identities=12% Similarity=0.045 Sum_probs=60.4
Q ss_pred cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH---HHHHH---hCCCCeEEEEeccCCccHHhHH---------
Q 020668 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP---LMDQW---LGNRKRILVLNREDMISMADRN--------- 166 (323)
Q Consensus 102 ~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~---~i~~~---l~~k~~iiVlNK~DLl~~~~~~--------- 166 (323)
+++|+ .++..........+|++++|+|..++.+..+. .+..+ ..+.|+++|.||+||....+..
T Consensus 54 Dt~G~-~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~ 132 (189)
T cd04134 54 DTAGQ-EEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKH 132 (189)
T ss_pred ECCCC-hhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCC
Confidence 45665 33322222346889999999998765433221 11111 2267999999999997543211
Q ss_pred -----HHHHHHHhhC-ceEEEecCcCCCcchhhhHHHHHh
Q 020668 167 -----AWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 167 -----~~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
+-.+...+.+ ..++.+||++|.|++++.+.+.+.
T Consensus 133 ~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~ 172 (189)
T cd04134 133 TISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARV 172 (189)
T ss_pred CCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHH
Confidence 1112222334 568999999999999987766544
No 409
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.86 E-value=1.5e-05 Score=72.85 Aligned_cols=56 Identities=21% Similarity=0.328 Sum_probs=36.2
Q ss_pred EeeeecCCCCChhhHHHhhhcCcccc-----cc------C------CCCceeeEEEE---EeCCcEEEEecCCccC
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCP-----AA------P------RPGVTRVLKWV---RFGKDLEFLDSPGIIP 274 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~-----v~------~------~pgtT~~~~~~---~~~~~~~liDTPGi~~ 274 (323)
+|+++|.+|+|||||+|+|+...... +. + .-|+|.+.... +.+.++.++||||...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~ 76 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMD 76 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccc
Confidence 48999999999999999998642211 11 0 12334332222 2245789999999863
No 410
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=97.86 E-value=3.7e-05 Score=69.30 Aligned_cols=58 Identities=21% Similarity=0.172 Sum_probs=38.5
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCcc-ccccCCCCceeeEEEEEeC---CcEEEEecCCcc
Q 020668 216 RAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFG---KDLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~-~~v~~~pgtT~~~~~~~~~---~~~~liDTPGi~ 273 (323)
..++|++||.+|||||||+++++.... ....+..|++.....+..+ -.+.++||||.-
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~ 73 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCch
Confidence 457899999999999999999875432 1233344444433222222 257899999974
No 411
>PLN00223 ADP-ribosylation factor; Provisional
Probab=97.86 E-value=2.8e-05 Score=67.85 Aligned_cols=54 Identities=19% Similarity=0.312 Sum_probs=36.6
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe-CCcEEEEecCCc
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGI 272 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~liDTPGi 272 (323)
.++|+++|.+|||||||++++....... ..|.+..+...+.. +-.+.++||||-
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~~--~~pt~g~~~~~~~~~~~~~~i~D~~Gq 71 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIGFNVETVEYKNISFTVWDVGGQ 71 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCcc--ccCCcceeEEEEEECCEEEEEEECCCC
Confidence 3689999999999999999998543322 22332233323333 345889999995
No 412
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=97.86 E-value=6.3e-05 Score=69.24 Aligned_cols=101 Identities=12% Similarity=-0.063 Sum_probs=62.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHH----------hCCCCeEEEEeccCCccHH-
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQW----------LGNRKRILVLNREDMISMA- 163 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~----------l~~k~~iiVlNK~DLl~~~- 163 (323)
+-+++|+ ..+.......+..+|++|+|+|..+..+..+. ++.+. ..+.|+++|.||+|+....
T Consensus 52 I~Dt~G~-~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~ 130 (247)
T cd04143 52 ILDTSGN-HPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPRE 130 (247)
T ss_pred EEECCCC-hhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccc
Confidence 3456676 33333223356889999999998765332111 11111 1257999999999997522
Q ss_pred -hHHHHHHHHHh-hCceEEEecCcCCCcchhhhHHHHHhh
Q 020668 164 -DRNAWATYFAK-QGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 164 -~~~~~~~~~~~-~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
..++..+.+.. .+..++.+||++|.|++++.+.+..+.
T Consensus 131 v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 131 VQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred cCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 12222233322 245789999999999999988877654
No 413
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=97.86 E-value=2.6e-05 Score=69.53 Aligned_cols=54 Identities=19% Similarity=0.334 Sum_probs=36.6
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe-----CCcEEEEecCCccC
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-----GKDLEFLDSPGIIP 274 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-----~~~~~liDTPGi~~ 274 (323)
+|+++|.+|+|||||++.|.......+ .+.++.....+.. +..+.|+||||...
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t--~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~ 60 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRST--VTSIEPNVATFILNSEGKGKKFRLVDVPGHPK 60 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCc--cCcEeecceEEEeecCCCCceEEEEECCCCHH
Confidence 489999999999999999997643221 2223333222222 45688999999753
No 414
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.85 E-value=1.6e-05 Score=83.42 Aligned_cols=59 Identities=25% Similarity=0.484 Sum_probs=43.4
Q ss_pred CccceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEE--e-----CCcEEEEecCCcc
Q 020668 214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-----GKDLEFLDSPGII 273 (323)
Q Consensus 214 ~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~--~-----~~~~~liDTPGi~ 273 (323)
..++..|+++|.+|+|||||+|+|.+... ..+..+|+|.++..+. . +..+.|+||||.-
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~-~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe 306 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQI-AQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE 306 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccC-ccccCCccccccceEEEEEEecCCceEEEEEECCcHH
Confidence 34567899999999999999999987543 3455577887643222 1 2568999999963
No 415
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=97.84 E-value=5.8e-05 Score=68.11 Aligned_cols=98 Identities=15% Similarity=-0.035 Sum_probs=61.3
Q ss_pred cccccchHHHHHHHHH-HHHh-hcCeEEEEEeCCCCCCCCc-HHHHHHh------CCCCeEEEEeccCCccHHhH--HHH
Q 020668 100 VQWYPGHIAKTEKELK-DQLK-LMDVVIEVRDARIPLSTTH-PLMDQWL------GNRKRILVLNREDMISMADR--NAW 168 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~-~~i~-~aDlIl~VvDar~~~~~~~-~~i~~~l------~~k~~iiVlNK~DLl~~~~~--~~~ 168 (323)
+-++||+. ..+. ..+. .+|++++|+|+.++.+... ..+...+ .+.|+++|.||+|+.+..+. ++.
T Consensus 54 i~Dt~G~~----~~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~ 129 (221)
T cd04148 54 VIDHWEQE----MWTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEG 129 (221)
T ss_pred EEeCCCcc----hHHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHH
Confidence 34567764 1122 2344 8999999999987643221 1122211 25799999999999754321 111
Q ss_pred HHHHHhhCceEEEecCcCCCcchhhhHHHHHhh
Q 020668 169 ATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 169 ~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
.+.....+..++.+||++|.|++++.+.+....
T Consensus 130 ~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~ 162 (221)
T cd04148 130 RACAVVFDCKFIETSAGLQHNVDELLEGIVRQI 162 (221)
T ss_pred HHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 222333466789999999999999887765443
No 416
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=97.83 E-value=2.6e-05 Score=70.63 Aligned_cols=54 Identities=24% Similarity=0.393 Sum_probs=35.4
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe-CCcEEEEecCCcc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (323)
++|+++|.+|||||||+|+++...... ..|.+..+...... ..++.|+||||-.
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~--~~~Tig~~~~~~~~~~~~l~iwDt~G~e 55 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD--TVSTVGGAFYLKQWGPYNISIWDTAGRE 55 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC--CCCccceEEEEEEeeEEEEEEEeCCCcc
Confidence 368999999999999999999765322 22222122221122 2357899999974
No 417
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=97.83 E-value=3.3e-05 Score=68.69 Aligned_cols=55 Identities=22% Similarity=0.294 Sum_probs=36.5
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceee-EEEEEeCC----cEEEEecCCcc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-LKWVRFGK----DLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~-~~~~~~~~----~~~liDTPGi~ 273 (323)
++|+++|.+|||||||+|+|.+....... .|.++.. ........ ++.++||+|..
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~ 65 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGY-PPTIGNLDPAKTIEPYRRNIKLQLWDTAGQE 65 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccC-CCceeeeeEEEEEEeCCCEEEEEeecCCCHH
Confidence 68999999999999999999976543222 2222222 22222222 37789999985
No 418
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=97.83 E-value=1.9e-05 Score=81.21 Aligned_cols=36 Identities=19% Similarity=0.403 Sum_probs=26.9
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCC-ceee
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-VTRV 254 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pg-tT~~ 254 (323)
+.-|+++|.+|+|||||+|+|.+... +...|| +|++
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v--~~~e~ggiTq~ 40 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAV--AKREAGGITQH 40 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccc--ccccCCceecc
Confidence 34599999999999999999998643 233344 6654
No 419
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=97.83 E-value=4.4e-05 Score=65.89 Aligned_cols=56 Identities=21% Similarity=0.338 Sum_probs=35.0
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEE-EEEeCC---cEEEEecCCcc
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK-WVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~-~~~~~~---~~~liDTPGi~ 273 (323)
.++|+++|.+|||||||++++...... ....|.+..... .+.++. .+.|+||||-.
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 61 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFP-DYHDPTIEDAYKQQARIDNEPALLDILDTAGQA 61 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC-CCcCCcccceEEEEEEECCEEEEEEEEeCCCch
Confidence 357999999999999999999865431 111121111111 223322 47789999964
No 420
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=97.83 E-value=1.9e-05 Score=82.88 Aligned_cols=57 Identities=21% Similarity=0.275 Sum_probs=40.6
Q ss_pred eEeeeecCCCCChhhHHHhhhcCcccc-----ccC------------CCCceeeEEE---EEeCCcEEEEecCCccC
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCP-----AAP------------RPGVTRVLKW---VRFGKDLEFLDSPGIIP 274 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~-----v~~------------~pgtT~~~~~---~~~~~~~~liDTPGi~~ 274 (323)
.+|+++|.+|+|||||+|+|+...... +.+ ..|+|.+... .+.+..+.++||||...
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD 87 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence 479999999999999999997432211 111 3578877433 23356799999999964
No 421
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=97.83 E-value=1.9e-05 Score=63.77 Aligned_cols=50 Identities=32% Similarity=0.402 Sum_probs=32.2
Q ss_pred eecCCCCChhhHHHhhhcCccccccCCCCce-eeEEEE--Ee---CCcEEEEecCCcc
Q 020668 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVT-RVLKWV--RF---GKDLEFLDSPGII 273 (323)
Q Consensus 222 ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT-~~~~~~--~~---~~~~~liDTPGi~ 273 (323)
++|.+|+|||||+|+|.+..... . ...+| .+.... .. ...+.++||||..
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~-~-~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~ 56 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVP-E-EYETTIIDFYSKTIEVDGKKVKLQIWDTAGQE 56 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCC-c-ccccchhheeeEEEEECCEEEEEEEEecCChH
Confidence 58999999999999999765421 1 11222 222111 11 3468899999975
No 422
>PRK00007 elongation factor G; Reviewed
Probab=97.79 E-value=2.6e-05 Score=81.91 Aligned_cols=57 Identities=19% Similarity=0.275 Sum_probs=40.9
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCcc-----cccc------------CCCCceeeEE---EEEeCCcEEEEecCCcc
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRRM-----CPAA------------PRPGVTRVLK---WVRFGKDLEFLDSPGII 273 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~-----~~v~------------~~pgtT~~~~---~~~~~~~~~liDTPGi~ 273 (323)
-.+|+++|.+|+|||||+|+|+.... -.+. ...|+|++.. +.+.+..+.|+||||..
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 34799999999999999999973211 0122 2568888753 23336689999999985
No 423
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=97.79 E-value=0.00015 Score=73.80 Aligned_cols=88 Identities=13% Similarity=0.022 Sum_probs=63.2
Q ss_pred chhhHhhhcccccCcceeeeecccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCC
Q 020668 74 IEAYEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRK 149 (323)
Q Consensus 74 ~~~~~e~e~~~~~~~~~~~~~~~l~--~i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~ 149 (323)
|-...|++.++++......|...-. .+-++||| ..+...+...+..+|.+|+|+|+..+.......+.+.. .+.|
T Consensus 55 D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~-~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iP 133 (526)
T PRK00741 55 DWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGH-EDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTP 133 (526)
T ss_pred CCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCc-hhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCC
Confidence 3345577777777776555554433 36688999 56777788889999999999999877644333444443 3789
Q ss_pred eEEEEeccCCccH
Q 020668 150 RILVLNREDMISM 162 (323)
Q Consensus 150 ~iiVlNK~DLl~~ 162 (323)
+++++||+|+...
T Consensus 134 iiv~iNK~D~~~a 146 (526)
T PRK00741 134 IFTFINKLDRDGR 146 (526)
T ss_pred EEEEEECCccccc
Confidence 9999999998653
No 424
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.79 E-value=3.9e-05 Score=71.49 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=20.1
Q ss_pred EeeeecCCCCChhhHHHhhhcC
Q 020668 219 RAGIVGYPNVGKSSLINRLLKR 240 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~ 240 (323)
+|+++|.+|+|||||+|+|+..
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~ 25 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLF 25 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 5899999999999999999853
No 425
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.78 E-value=0.00014 Score=68.42 Aligned_cols=99 Identities=16% Similarity=0.167 Sum_probs=64.3
Q ss_pred ccccccchH-----HHH-HHHHHHHHhhcCeEEEEEeCCCCCCC-----CcH---HHHHH---hCCCCeEEEEeccCCcc
Q 020668 99 PVQWYPGHI-----AKT-EKELKDQLKLMDVVIEVRDARIPLST-----THP---LMDQW---LGNRKRILVLNREDMIS 161 (323)
Q Consensus 99 ~i~~~PGh~-----~k~-~~~l~~~i~~aDlIl~VvDar~~~~~-----~~~---~i~~~---l~~k~~iiVlNK~DLl~ 161 (323)
.+++.||-. -+. --++.+.|++++.+++|+|...+... ... ++..+ +.++|.++|.||+|+.+
T Consensus 247 tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~e 326 (366)
T KOG1489|consen 247 TVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPE 326 (366)
T ss_pred EeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchh
Confidence 367778643 332 24667889999999999999766321 111 11111 23789999999999863
Q ss_pred HHhHHHHHHHH-HhhC-ceEEEecCcCCCcchhhhHHHHH
Q 020668 162 MADRNAWATYF-AKQG-TKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 162 ~~~~~~~~~~~-~~~g-~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
.++ ..++.+ +++. ..++++||+.++|+.+|++.+.+
T Consensus 327 ae~--~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 327 AEK--NLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred HHH--HHHHHHHHHcCCCcEEEeeeccccchHHHHHHHhh
Confidence 322 222222 2322 45899999999999998877654
No 426
>PRK07560 elongation factor EF-2; Reviewed
Probab=97.78 E-value=0.00012 Score=77.38 Aligned_cols=90 Identities=17% Similarity=0.086 Sum_probs=67.9
Q ss_pred CCCcchhhHhhhcccccCccee--eeec--cc--cccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHH
Q 020668 70 SNGSIEAYEEECDWADLDADLY--YWTK--SL--RPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQ 143 (323)
Q Consensus 70 ~~~~~~~~~e~e~~~~~~~~~~--~~~~--~l--~~i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~ 143 (323)
..+.|-...|++.+++++.... .|.. .- -.+-++|||. ++..++...+..+|.+|+|+|+..+.......+..
T Consensus 55 ~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~-df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~ 133 (731)
T PRK07560 55 QLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV-DFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLR 133 (731)
T ss_pred ceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc-ChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHH
Confidence 4467778889999999988754 3321 11 2267899994 47788899999999999999999887665555555
Q ss_pred Hh--CCCCeEEEEeccCCc
Q 020668 144 WL--GNRKRILVLNREDMI 160 (323)
Q Consensus 144 ~l--~~k~~iiVlNK~DLl 160 (323)
.. .+.|.++++||+|+.
T Consensus 134 ~~~~~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 134 QALRERVKPVLFINKVDRL 152 (731)
T ss_pred HHHHcCCCeEEEEECchhh
Confidence 42 267889999999986
No 427
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=97.78 E-value=3.9e-05 Score=65.84 Aligned_cols=54 Identities=22% Similarity=0.154 Sum_probs=36.3
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEE--EEEeCC---cEEEEecCCcc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~~~liDTPGi~ 273 (323)
++++++|.+|+|||||++++..... ....+.|+.+.. .+.++. .+.++||||..
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 59 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGY--PTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQD 59 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEECCCCh
Confidence 3689999999999999999986432 233344444421 222332 46789999974
No 428
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=97.78 E-value=8.4e-05 Score=65.10 Aligned_cols=96 Identities=15% Similarity=0.062 Sum_probs=61.3
Q ss_pred ccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHH----HHhCCCCeEEEEeccCCccH--------------
Q 020668 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMD----QWLGNRKRILVLNREDMISM-------------- 162 (323)
Q Consensus 103 ~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~----~~l~~k~~iiVlNK~DLl~~-------------- 162 (323)
++|. .++..........+|++|+|+|..++.+..+. .+. +...+.|+++|.||+||.+.
T Consensus 60 taG~-e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~ 138 (182)
T cd04172 60 TSGS-PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTP 138 (182)
T ss_pred CCCc-hhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCC
Confidence 4554 44544444567899999999998766443221 111 11235799999999998531
Q ss_pred HhHHHHHHHHHhhCc-eEEEecCcCCCc-chhhhHHHHH
Q 020668 163 ADRNAWATYFAKQGT-KVIFSNGQLGMG-TMKLSRLAKA 199 (323)
Q Consensus 163 ~~~~~~~~~~~~~g~-~vi~iSa~~g~g-i~~L~~~l~~ 199 (323)
-..++..++.++.+. .++.+||++|.| ++++.+.+..
T Consensus 139 v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~ 177 (182)
T cd04172 139 VSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL 177 (182)
T ss_pred CCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHH
Confidence 011223333445663 789999999998 9988766543
No 429
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.76 E-value=2.6e-05 Score=65.83 Aligned_cols=45 Identities=24% Similarity=0.417 Sum_probs=32.5
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEeCCcEEEEecCCcc
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII 273 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~~~liDTPGi~ 273 (323)
||++||.+++|||||+++|.+... ...-|..+.+ ..+ +|||||=.
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~-----~~~KTq~i~~---~~~--~IDTPGEy 47 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI-----RYKKTQAIEY---YDN--TIDTPGEY 47 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC-----CcCccceeEe---ccc--EEECChhh
Confidence 589999999999999999998643 1233444333 333 49999964
No 430
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.76 E-value=6.1e-05 Score=65.92 Aligned_cols=54 Identities=20% Similarity=0.264 Sum_probs=34.4
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceee-EEEEEeC---CcEEEEecCCcc
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-LKWVRFG---KDLEFLDSPGII 273 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~-~~~~~~~---~~~~liDTPGi~ 273 (323)
+|+++|.+|||||||++++.+..... ...|..... ...+..+ ..+.|+||||--
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~ 59 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQ-VYEPTVFENYVHDIFVDGLHIELSLWDTAGQE 59 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-ccCCcceeeeEEEEEECCEEEEEEEEECCCCh
Confidence 68999999999999999998754321 112222111 1122222 247799999964
No 431
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=97.75 E-value=4.5e-05 Score=65.26 Aligned_cols=53 Identities=21% Similarity=0.198 Sum_probs=34.1
Q ss_pred eeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe-CCcEEEEecCCcc
Q 020668 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (323)
Q Consensus 220 v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (323)
|+++|.+|||||||++++.+... .....|.+..+...+.. +..+.++||||-.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~-~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~ 55 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERS-LESVVPTTGFNSVAIPTQDAIMELLEIGGSQ 55 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC-cccccccCCcceEEEeeCCeEEEEEECCCCc
Confidence 78999999999999999997532 22222221122222222 3457899999974
No 432
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.75 E-value=0.00012 Score=68.76 Aligned_cols=91 Identities=23% Similarity=0.301 Sum_probs=66.2
Q ss_pred HHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC---CCCeEEEEeccCCccHHh-----------------HHHHHHH
Q 020668 112 KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG---NRKRILVLNREDMISMAD-----------------RNAWATY 171 (323)
Q Consensus 112 ~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~---~k~~iiVlNK~DLl~~~~-----------------~~~~~~~ 171 (323)
++-+..+.+||+|+.|+|+.++-...++.+...+. +.|-++|+||+|.++... ..+|.+.
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~ 226 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEK 226 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHH
Confidence 45557789999999999998766667776666554 789999999999876531 1123333
Q ss_pred HHhh----------C----ceEEEecCcCCCcchhhhHHHHHhhh
Q 020668 172 FAKQ----------G----TKVIFSNGQLGMGTMKLSRLAKALAS 202 (323)
Q Consensus 172 ~~~~----------g----~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (323)
|... | ..+|++||++|+|+++|++.|...++
T Consensus 227 f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 227 FTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred hccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 3211 1 25899999999999999998766554
No 433
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=97.75 E-value=7.3e-05 Score=64.76 Aligned_cols=55 Identities=25% Similarity=0.378 Sum_probs=35.6
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEE-EEEeCC---cEEEEecCCcc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK-WVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~-~~~~~~---~~~liDTPGi~ 273 (323)
+||+++|.+|||||||++++....- .....|.+..+.. .+..+. .+.|+||+|--
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f-~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE 60 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeeEEEEEECCEEEEEEEEECCCcc
Confidence 5799999999999999999996542 2222232222221 223332 46799999974
No 434
>PLN03126 Elongation factor Tu; Provisional
Probab=97.74 E-value=4.3e-05 Score=76.85 Aligned_cols=57 Identities=25% Similarity=0.380 Sum_probs=41.7
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccc---------------cccCCCCceeeEEEEEe---CCcEEEEecCCc
Q 020668 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC---------------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGI 272 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~---------------~v~~~pgtT~~~~~~~~---~~~~~liDTPGi 272 (323)
..++|+++|.+|+|||||+|+|+..... .-....|+|.+.....+ +..+.|+||||.
T Consensus 80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh 154 (478)
T PLN03126 80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH 154 (478)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCH
Confidence 4688999999999999999999852211 11223588888654433 557899999995
No 435
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=97.73 E-value=8.2e-05 Score=65.93 Aligned_cols=82 Identities=15% Similarity=-0.039 Sum_probs=55.4
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcH--HHHHH----hCCCCeEEEEeccCCccH-------------------H--hHHHHH
Q 020668 117 QLKLMDVVIEVRDARIPLSTTHP--LMDQW----LGNRKRILVLNREDMISM-------------------A--DRNAWA 169 (323)
Q Consensus 117 ~i~~aDlIl~VvDar~~~~~~~~--~i~~~----l~~k~~iiVlNK~DLl~~-------------------~--~~~~~~ 169 (323)
....+|++|+|+|..++.+..+. .+... ..+.|+++|.||+||.+. . ..++..
T Consensus 84 ~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~ 163 (195)
T cd01873 84 AYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGR 163 (195)
T ss_pred cCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCHHHHH
Confidence 46899999999998766543322 11111 235789999999998631 0 112223
Q ss_pred HHHHhhCceEEEecCcCCCcchhhhHHHH
Q 020668 170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (323)
Q Consensus 170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (323)
+..++.+..++.+||++|.|++++.+.+.
T Consensus 164 ~~a~~~~~~~~E~SAkt~~~V~e~F~~~~ 192 (195)
T cd01873 164 AVAKELGIPYYETSVVTQFGVKDVFDNAI 192 (195)
T ss_pred HHHHHhCCEEEEcCCCCCCCHHHHHHHHH
Confidence 33445677899999999999998876654
No 436
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.73 E-value=5.3e-05 Score=68.72 Aligned_cols=57 Identities=28% Similarity=0.438 Sum_probs=39.5
Q ss_pred ccceEeeeecCCCCChhhHHHhhhcCc-cccccCCCCceeeEEEEEeCCcEEEEecCCcc
Q 020668 215 PRAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII 273 (323)
Q Consensus 215 ~~~~~v~ivG~pNvGKSSLiN~L~~~~-~~~v~~~pgtT~~~~~~~~~~~~~liDTPGi~ 273 (323)
..+..|+++|.+|+|||||+|+|.+.. ...++...|+. .+ ....+..+.++||||..
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i-~i-~~~~~~~i~~vDtPg~~ 94 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPI-TV-VTGKKRRLTFIECPNDI 94 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccE-EE-EecCCceEEEEeCCchH
Confidence 446779999999999999999998752 22334445542 11 11236678999999953
No 437
>PRK04004 translation initiation factor IF-2; Validated
Probab=97.73 E-value=4.7e-05 Score=78.42 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=22.8
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCc
Q 020668 216 RAVRAGIVGYPNVGKSSLINRLLKRR 241 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~ 241 (323)
++..|+++|.+|+|||||+|+|.+..
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~ 30 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTA 30 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcc
Confidence 45569999999999999999998764
No 438
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.73 E-value=0.00015 Score=65.81 Aligned_cols=84 Identities=20% Similarity=0.211 Sum_probs=57.5
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCe-EEEEeccCCccHHh-HHHHHHH----
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKR-ILVLNREDMISMAD-RNAWATY---- 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~-iiVlNK~DLl~~~~-~~~~~~~---- 171 (323)
+-++||+. ..+...++.+|++++|+|+..+....+..+..++. ++|. ++|+||+|+++... ..+..+.
T Consensus 87 ~vDtPg~~----~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~ 162 (225)
T cd01882 87 FIECPNDI----NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHR 162 (225)
T ss_pred EEeCCchH----HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHH
Confidence 44778874 55566789999999999999877766666666654 5675 45999999984332 2222222
Q ss_pred HH-hh--CceEEEecCcCC
Q 020668 172 FA-KQ--GTKVIFSNGQLG 187 (323)
Q Consensus 172 ~~-~~--g~~vi~iSa~~g 187 (323)
+. +. +.+++++||++.
T Consensus 163 ~~~~~~~~~ki~~iSa~~~ 181 (225)
T cd01882 163 FWTEVYQGAKLFYLSGIVH 181 (225)
T ss_pred HHHhhCCCCcEEEEeeccC
Confidence 22 11 257999999876
No 439
>PTZ00416 elongation factor 2; Provisional
Probab=97.73 E-value=0.00013 Score=78.09 Aligned_cols=89 Identities=16% Similarity=0.152 Sum_probs=70.1
Q ss_pred CCcchhhHhhhcccccCcc--eeeeecc----------ccccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc
Q 020668 71 NGSIEAYEEECDWADLDAD--LYYWTKS----------LRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH 138 (323)
Q Consensus 71 ~~~~~~~~e~e~~~~~~~~--~~~~~~~----------l~~i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~ 138 (323)
.|.|-...|++.+++++.. .+.|... +--+.++||| .++..++...+..+|.+|+|+|+..+.....
T Consensus 55 ~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liDtPG~-~~f~~~~~~al~~~D~ailVvda~~g~~~~t 133 (836)
T PTZ00416 55 RFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDSPGH-VDFSSEVTAALRVTDGALVVVDCVEGVCVQT 133 (836)
T ss_pred eecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEcCCCH-HhHHHHHHHHHhcCCeEEEEEECCCCcCccH
Confidence 3567788899999998865 5566532 1126789999 5577888999999999999999999887766
Q ss_pred HHHHHHhC--CCCeEEEEeccCCc
Q 020668 139 PLMDQWLG--NRKRILVLNREDMI 160 (323)
Q Consensus 139 ~~i~~~l~--~k~~iiVlNK~DLl 160 (323)
..+.+.+. ++|+++++||+|+.
T Consensus 134 ~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 134 ETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred HHHHHHHHHcCCCEEEEEEChhhh
Confidence 66665544 67999999999997
No 440
>PRK12739 elongation factor G; Reviewed
Probab=97.72 E-value=3.2e-05 Score=81.27 Aligned_cols=57 Identities=21% Similarity=0.321 Sum_probs=40.8
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCcc-----cccc------------CCCCceeeEEEE---EeCCcEEEEecCCcc
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRRM-----CPAA------------PRPGVTRVLKWV---RFGKDLEFLDSPGII 273 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~-----~~v~------------~~pgtT~~~~~~---~~~~~~~liDTPGi~ 273 (323)
..+|+++|.+|+|||||+|+|+.... ..+. ...|+|.+.... +.+..+.++||||+.
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence 45799999999999999999974311 1122 246888875332 335678999999985
No 441
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.72 E-value=3.9e-05 Score=65.39 Aligned_cols=31 Identities=42% Similarity=0.608 Sum_probs=25.9
Q ss_pred eeeecCCCCChhhHHHhhhcCccccccCCCC
Q 020668 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPG 250 (323)
Q Consensus 220 v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pg 250 (323)
|+|+|..++|||||||+|+|....+++..|.
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~ 31 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPC 31 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSST
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCccccccc
Confidence 6899999999999999999987777666553
No 442
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=0.00036 Score=61.51 Aligned_cols=122 Identities=16% Similarity=0.088 Sum_probs=85.3
Q ss_pred cccccCcceeeeeccccc----cc-cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHhC-----CCC
Q 020668 82 DWADLDADLYYWTKSLRP----VQ-WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRK 149 (323)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~----i~-~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l~-----~k~ 149 (323)
...++..|++..+-.+.. +| |.-..+++++..+-..+++++++|.|.|..+-.+..+ ..|..... +.-
T Consensus 51 YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~vi 130 (221)
T KOG0094|consen 51 YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVI 130 (221)
T ss_pred ccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceE
Confidence 345777777776655443 22 5555568999999999999999999999876555433 22333332 134
Q ss_pred eEEEEeccCCccHHhHHH--HHHHHHhhCceEEEecCcCCCcchhhhHHHHHhhhh
Q 020668 150 RILVLNREDMISMADRNA--WATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASD 203 (323)
Q Consensus 150 ~iiVlNK~DLl~~~~~~~--~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~~~ 203 (323)
+++|.||.||+++.+... -....++++..++.+||+.|.|+.+|.+.+......
T Consensus 131 I~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~ 186 (221)
T KOG0094|consen 131 IFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAALPG 186 (221)
T ss_pred EEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhccC
Confidence 678999999999865322 223344566788999999999999988877766554
No 443
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=2.7e-05 Score=75.21 Aligned_cols=125 Identities=16% Similarity=0.186 Sum_probs=94.4
Q ss_pred CCCCcchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCC----------CCC
Q 020668 69 NSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIP----------LST 136 (323)
Q Consensus 69 ~~~~~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~----------~~~ 136 (323)
++-|.|-...||+.+.+.++..-||.+..+. +-+.||| ..+..+|...+.+||+-++|+.+|.+ .+.
T Consensus 128 lsW~ldtn~EeR~kgKtvEvGrA~FEte~~~ftiLDApGH-k~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTR 206 (501)
T KOG0459|consen 128 LSWALDTNGEERDKGKTVEVGRAYFETENKRFTILDAPGH-KSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTR 206 (501)
T ss_pred EEEEEcCchhhhhccceeeeeeEEEEecceeEEeeccCcc-cccchhhccccchhhhhhhhhhhhhchhhcccccccchh
Confidence 4556677778888888999999999998776 8899999 77889999999999999999999754 244
Q ss_pred CcHHHHHHhCCCCeEEEEeccCCccHH-------hH-HHHHHHHHhhC------ceEEEecCcCCCcchhhh
Q 020668 137 THPLMDQWLGNRKRILVLNREDMISMA-------DR-NAWATYFAKQG------TKVIFSNGQLGMGTMKLS 194 (323)
Q Consensus 137 ~~~~i~~~l~~k~~iiVlNK~DLl~~~-------~~-~~~~~~~~~~g------~~vi~iSa~~g~gi~~L~ 194 (323)
.+..+...++.++.|+++||+|--.-+ +. .+...+++.+| ..++++|..+|.++.+..
T Consensus 207 Eha~Lakt~gv~~lVv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 207 EHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred HHHHHHHhhccceEEEEEEeccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence 566677777789999999999964221 11 12223344444 357899999999887654
No 444
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=97.68 E-value=2.3e-05 Score=68.60 Aligned_cols=57 Identities=23% Similarity=0.388 Sum_probs=39.5
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCcccc-----------------ccCCCCceeeEEE---E--EeCCcEEEEecCCcc
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRRMCP-----------------AAPRPGVTRVLKW---V--RFGKDLEFLDSPGII 273 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~-----------------v~~~pgtT~~~~~---~--~~~~~~~liDTPGi~ 273 (323)
.++|+++|..++|||||+++|+...... .....|.|.+... . .....+.++||||..
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4579999999999999999998643211 0112466666433 2 334579999999974
No 445
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.67 E-value=0.00012 Score=62.99 Aligned_cols=56 Identities=16% Similarity=0.106 Sum_probs=36.8
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceee---EEEEEeCC---cEEEEecCCcc
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV---LKWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~---~~~~~~~~---~~~liDTPGi~ 273 (323)
.++|+++|.+|||||||+|++++... .+.....|+.. ...+..+. .+.+.||+|-.
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~f-~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~ 65 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSF-SLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDE 65 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCCC-CcccCCCccCcceEEEEEEECCeEEEEEEEecCCcc
Confidence 46899999999999999999997543 22333333322 12233322 36678999854
No 446
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.67 E-value=0.00023 Score=67.76 Aligned_cols=104 Identities=21% Similarity=0.289 Sum_probs=70.3
Q ss_pred cccccchHHHH------HHHHHHHHhhcCeEEEEEeCCCCCCCCcH---------HHHHH---hCCCCeEEEEeccCC-c
Q 020668 100 VQWYPGHIAKT------EKELKDQLKLMDVVIEVRDARIPLSTTHP---------LMDQW---LGNRKRILVLNREDM-I 160 (323)
Q Consensus 100 i~~~PGh~~k~------~~~l~~~i~~aDlIl~VvDar~~~~~~~~---------~i~~~---l~~k~~iiVlNK~DL-l 160 (323)
+++.||-++-. --++.+.|+++.++++|+|..... .+++ ++..| |.+||.++|+||+|+ .
T Consensus 211 ~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~-~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~ 289 (369)
T COG0536 211 VADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPID-GRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPL 289 (369)
T ss_pred EecCcccccccccCCCccHHHHHHHHhhheeEEEEecCccc-CCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCc
Confidence 77888765322 235667789999999999986322 1221 12222 348999999999995 4
Q ss_pred cHHhHHHHHHHHHhh-CceEE-EecCcCCCcchhhhHHHHHhhhhh
Q 020668 161 SMADRNAWATYFAKQ-GTKVI-FSNGQLGMGTMKLSRLAKALASDV 204 (323)
Q Consensus 161 ~~~~~~~~~~~~~~~-g~~vi-~iSa~~g~gi~~L~~~l~~l~~~~ 204 (323)
+.++.+...+++.+. +.... ++|+.+++|++.|.+.+.++....
T Consensus 290 ~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 290 DEEELEELKKALAEALGWEVFYLISALTREGLDELLRALAELLEET 335 (369)
T ss_pred CHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHHh
Confidence 556666666666653 33322 399999999999988777765543
No 447
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.67 E-value=5.2e-05 Score=76.28 Aligned_cols=25 Identities=40% Similarity=0.466 Sum_probs=22.4
Q ss_pred cceEeeeecCCCCChhhHHHhhhcC
Q 020668 216 RAVRAGIVGYPNVGKSSLINRLLKR 240 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~ 240 (323)
..++|+++|.+|+|||||+++|+..
T Consensus 26 ~~~~i~iiGhvdaGKSTL~~~LL~~ 50 (474)
T PRK05124 26 SLLRFLTCGSVDDGKSTLIGRLLHD 50 (474)
T ss_pred CceEEEEECCCCCChHHHHHHHHHh
Confidence 4689999999999999999999854
No 448
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=97.66 E-value=7.1e-05 Score=77.54 Aligned_cols=54 Identities=26% Similarity=0.452 Sum_probs=40.6
Q ss_pred EeeeecCCCCChhhHHHhhhcCc--cccccCCCCceeeEEEEEe----CCcEEEEecCCc
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRR--MCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGI 272 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~--~~~v~~~pgtT~~~~~~~~----~~~~~liDTPGi 272 (323)
-|+++|.+|+|||||+|+|.+.. ........|+|.+....++ +..+.++||||.
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh 61 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH 61 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCH
Confidence 37999999999999999999743 2233344699988754443 345789999995
No 449
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=97.66 E-value=7.7e-05 Score=68.67 Aligned_cols=53 Identities=25% Similarity=0.407 Sum_probs=35.5
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCcc
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (323)
+|+++|.+|||||||+|++++... .. ....|+.+. ..+.++. .+.|+||+|..
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f-~~-~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~ 59 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRF-EE-QYTPTIEDFHRKLYSIRGEVYQLDILDTSGNH 59 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC-CC-CCCCChhHhEEEEEEECCEEEEEEEEECCCCh
Confidence 689999999999999999986432 21 223333332 2334432 46699999974
No 450
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=97.65 E-value=0.00024 Score=72.34 Aligned_cols=88 Identities=15% Similarity=0.029 Sum_probs=63.9
Q ss_pred cchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCC
Q 020668 73 SIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNR 148 (323)
Q Consensus 73 ~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k 148 (323)
.|-...|++.++++......|...-.. +-++||| ..+...+...+..+|.+|+|+|+..+.......+.+.+ .++
T Consensus 55 ~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~-~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~ 133 (527)
T TIGR00503 55 SDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGH-EDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDT 133 (527)
T ss_pred CCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCCh-hhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 344466788888877766665544333 6689999 66778888899999999999999876544333444433 378
Q ss_pred CeEEEEeccCCcc
Q 020668 149 KRILVLNREDMIS 161 (323)
Q Consensus 149 ~~iiVlNK~DLl~ 161 (323)
|+++++||+|+..
T Consensus 134 PiivviNKiD~~~ 146 (527)
T TIGR00503 134 PIFTFMNKLDRDI 146 (527)
T ss_pred CEEEEEECccccC
Confidence 9999999999853
No 451
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=5.8e-05 Score=72.63 Aligned_cols=59 Identities=25% Similarity=0.327 Sum_probs=38.8
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCcccc------ccCCCCceeeEEEE--Ee-C----CcEEEEecCCccC
Q 020668 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP------AAPRPGVTRVLKWV--RF-G----KDLEFLDSPGIIP 274 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~------v~~~pgtT~~~~~~--~~-~----~~~~liDTPGi~~ 274 (323)
..++++++|.+|.|||||||+|+...... .+..+.-|..+... .+ . -++.++|||||-.
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD 91 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGD 91 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcc
Confidence 46789999999999999999999763221 12223234443222 22 1 2477899999964
No 452
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=97.62 E-value=3.4e-05 Score=79.06 Aligned_cols=82 Identities=23% Similarity=0.123 Sum_probs=58.3
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHH-HHHh-CCCCeEEEEeccCCccHHhHHHHHHHH-HhhCceEEEecCcCCCcchhhhH
Q 020668 119 KLMDVVIEVRDARIPLSTTHPLM-DQWL-GNRKRILVLNREDMISMADRNAWATYF-AKQGTKVIFSNGQLGMGTMKLSR 195 (323)
Q Consensus 119 ~~aDlIl~VvDar~~~~~~~~~i-~~~l-~~k~~iiVlNK~DLl~~~~~~~~~~~~-~~~g~~vi~iSa~~g~gi~~L~~ 195 (323)
.+.|+|+.|+||.+-. ++..+ .+++ .++|.++++|++|...+...+--.+.+ +.+|.++++++|++|+|+++|++
T Consensus 80 ~~~D~ivnVvDAtnLe--RnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~ 157 (653)
T COG0370 80 GKPDLIVNVVDATNLE--RNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEELKR 157 (653)
T ss_pred CCCCEEEEEcccchHH--HHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHHHHH
Confidence 5679999999997532 22222 2222 289999999999988764322222333 34789999999999999999988
Q ss_pred HHHHhhh
Q 020668 196 LAKALAS 202 (323)
Q Consensus 196 ~l~~l~~ 202 (323)
.+.+...
T Consensus 158 ~i~~~~~ 164 (653)
T COG0370 158 AIIELAE 164 (653)
T ss_pred HHHHhcc
Confidence 8766543
No 453
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=97.61 E-value=5.8e-05 Score=68.00 Aligned_cols=55 Identities=25% Similarity=0.301 Sum_probs=39.2
Q ss_pred EeeeecCCCCChhhHHHhhhcCccc-----------------c-------c------cCCCCceeeEEEEEe---CCcEE
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMC-----------------P-------A------APRPGVTRVLKWVRF---GKDLE 265 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~-----------------~-------v------~~~pgtT~~~~~~~~---~~~~~ 265 (323)
+|+++|.+++|||||+.+|+..... . + ....|+|++.....+ +..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 4899999999999999999632100 0 1 124589998654443 56789
Q ss_pred EEecCCcc
Q 020668 266 FLDSPGII 273 (323)
Q Consensus 266 liDTPGi~ 273 (323)
++||||..
T Consensus 81 liDtpG~~ 88 (219)
T cd01883 81 ILDAPGHR 88 (219)
T ss_pred EEECCChH
Confidence 99999964
No 454
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.60 E-value=7.8e-05 Score=71.42 Aligned_cols=60 Identities=23% Similarity=0.335 Sum_probs=38.9
Q ss_pred ccceEeeeecCCCCChhhHHHhhhcCccccc----cCCCC---ceeeEEEE--Ee-C----CcEEEEecCCccC
Q 020668 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPA----APRPG---VTRVLKWV--RF-G----KDLEFLDSPGIIP 274 (323)
Q Consensus 215 ~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v----~~~pg---tT~~~~~~--~~-~----~~~~liDTPGi~~ 274 (323)
+.+++|++||.+|.||||++|+|++...... ...+. .|..+... .+ + -++.++|||||-.
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD 94 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGD 94 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccc
Confidence 3478899999999999999999998743221 11222 22222221 12 1 2477999999974
No 455
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=97.60 E-value=9e-05 Score=64.13 Aligned_cols=54 Identities=22% Similarity=0.265 Sum_probs=33.9
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeC---CcEEEEecCCcc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG---KDLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~---~~~~liDTPGi~ 273 (323)
++|+++|.+|||||||+.+++.... .....| |+.+. ..+.++ -.+.++||||--
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f-~~~~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIP-TVFDNYSANVMVDGKPVNLGLWDTAGQE 60 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCcCCC-cceeeeEEEEEECCEEEEEEEEECCCch
Confidence 5799999999999999999886432 111122 11111 112222 247799999963
No 456
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=97.58 E-value=0.00032 Score=75.28 Aligned_cols=89 Identities=16% Similarity=0.132 Sum_probs=68.7
Q ss_pred CCcchhhHhhhcccccCcc--eeeeec----------------cccccccccchHHHHHHHHHHHHhhcCeEEEEEeCCC
Q 020668 71 NGSIEAYEEECDWADLDAD--LYYWTK----------------SLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARI 132 (323)
Q Consensus 71 ~~~~~~~~e~e~~~~~~~~--~~~~~~----------------~l~~i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~ 132 (323)
.|.|-...|++.+++++.. .+.|.. .+-.+-++||| ..+..++...+..+|.+|+|+|+..
T Consensus 55 ~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inliDtPGh-~dF~~e~~~al~~~D~ailVvda~~ 133 (843)
T PLN00116 55 RMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEYLINLIDSPGH-VDFSSEVTAALRITDGALVVVDCIE 133 (843)
T ss_pred eeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCceEEEEECCCCH-HHHHHHHHHHHhhcCEEEEEEECCC
Confidence 4678888899999988854 455531 01126789999 6788889999999999999999998
Q ss_pred CCCCCcHHHHHHhC--CCCeEEEEeccCCc
Q 020668 133 PLSTTHPLMDQWLG--NRKRILVLNREDMI 160 (323)
Q Consensus 133 ~~~~~~~~i~~~l~--~k~~iiVlNK~DLl 160 (323)
+.......+.+.+. ++|+++++||+|+.
T Consensus 134 Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 134 GVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred CCcccHHHHHHHHHHCCCCEEEEEECCccc
Confidence 87665555544433 78999999999998
No 457
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.58 E-value=9.7e-05 Score=73.21 Aligned_cols=57 Identities=23% Similarity=0.363 Sum_probs=41.3
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCcccc------------------------------ccCCCCceeeEEEEEe---CC
Q 020668 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP------------------------------AAPRPGVTRVLKWVRF---GK 262 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~------------------------------v~~~pgtT~~~~~~~~---~~ 262 (323)
..++|+++|.+|+|||||+++|+...... .....|+|.+.....+ +.
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~ 85 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKY 85 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCe
Confidence 35789999999999999999998421110 0123589988765544 34
Q ss_pred cEEEEecCCc
Q 020668 263 DLEFLDSPGI 272 (323)
Q Consensus 263 ~~~liDTPGi 272 (323)
.+.|+||||.
T Consensus 86 ~i~iiDtpGh 95 (426)
T TIGR00483 86 EVTIVDCPGH 95 (426)
T ss_pred EEEEEECCCH
Confidence 6889999994
No 458
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=97.58 E-value=3.7e-05 Score=66.75 Aligned_cols=83 Identities=16% Similarity=0.182 Sum_probs=54.4
Q ss_pred HHHhhcCeEEEEEeCCCCCC--CCcHHHHHHhC-----CCCeEEEEeccCCccHHhHHHHHHHHH--h----hCceEEEe
Q 020668 116 DQLKLMDVVIEVRDARIPLS--TTHPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYFA--K----QGTKVIFS 182 (323)
Q Consensus 116 ~~i~~aDlIl~VvDar~~~~--~~~~~i~~~l~-----~k~~iiVlNK~DLl~~~~~~~~~~~~~--~----~g~~vi~i 182 (323)
.....+|.||+|+|+.+... .....+.+++. ++|+++++||.|+.+.....+..+.+. + ....++.+
T Consensus 77 ~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~ 156 (175)
T PF00025_consen 77 SYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSC 156 (175)
T ss_dssp GGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEE
T ss_pred eeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEee
Confidence 45678999999999976431 11223334333 689999999999875433333333321 1 22568899
Q ss_pred cCcCCCcchhhhHHHH
Q 020668 183 NGQLGMGTMKLSRLAK 198 (323)
Q Consensus 183 Sa~~g~gi~~L~~~l~ 198 (323)
|+.+|+|+.+..+.|.
T Consensus 157 sa~~g~Gv~e~l~WL~ 172 (175)
T PF00025_consen 157 SAKTGEGVDEGLEWLI 172 (175)
T ss_dssp BTTTTBTHHHHHHHHH
T ss_pred eccCCcCHHHHHHHHH
Confidence 9999999887666543
No 459
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=0.00033 Score=62.29 Aligned_cols=93 Identities=13% Similarity=0.100 Sum_probs=68.1
Q ss_pred cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--------CCCeEEEEeccCCccHHhH--HHHHHH
Q 020668 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--------NRKRILVLNREDMISMADR--NAWATY 171 (323)
Q Consensus 102 ~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--------~k~~iiVlNK~DLl~~~~~--~~~~~~ 171 (323)
|.-+-+.++..-+......|+-|++|.|..+..+..+ +..|+. ..+.++|.||+|+..+.++ +.-.++
T Consensus 66 WDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfen--i~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~l 143 (207)
T KOG0078|consen 66 WDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFEN--IRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEAL 143 (207)
T ss_pred EEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHH--HHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHH
Confidence 5555568888888899999999999999876555443 333543 4689999999999874332 222234
Q ss_pred HHhhCceEEEecCcCCCcchhhhHH
Q 020668 172 FAKQGTKVIFSNGQLGMGTMKLSRL 196 (323)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~ 196 (323)
..+.|..++.+||+.|.||++....
T Consensus 144 A~e~G~~F~EtSAk~~~NI~eaF~~ 168 (207)
T KOG0078|consen 144 AREYGIKFFETSAKTNFNIEEAFLS 168 (207)
T ss_pred HHHhCCeEEEccccCCCCHHHHHHH
Confidence 4567899999999999999875433
No 460
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=97.58 E-value=0.00017 Score=62.99 Aligned_cols=55 Identities=16% Similarity=0.276 Sum_probs=35.5
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCcc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (323)
+||+++|.+|||||||++++..... .-...|.+..+. ..+..+. .+.++||+|--
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f-~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~ 60 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEF-DEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR 60 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEEECCEEEEEEEEeCCCch
Confidence 3689999999999999999986532 212223222222 2333332 47799999963
No 461
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=97.57 E-value=0.00026 Score=64.59 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=36.8
Q ss_pred CCeEEEEeccCCccHHhHHHHHHHHHhhCceEEEecCcCCCcchhhhHHHHHh
Q 020668 148 RKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 148 k~~iiVlNK~DLl~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
+|.++|+||+|+++.++...+ .+ ...++++||++|.|+++|++.+.+.
T Consensus 177 ~p~iiV~NK~Dl~~~~~~~~~----~~-~~~~~~~SA~~g~gi~~l~~~i~~~ 224 (233)
T cd01896 177 IPCLYVYNKIDLISIEELDLL----AR-QPNSVVISAEKGLNLDELKERIWDK 224 (233)
T ss_pred eeEEEEEECccCCCHHHHHHH----hc-CCCEEEEcCCCCCCHHHHHHHHHHH
Confidence 488999999999887665532 22 2458899999999999988876543
No 462
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.56 E-value=5.3e-05 Score=67.78 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.4
Q ss_pred EeeeecCCCCChhhHHHhhhcCc
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRR 241 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~ 241 (323)
+|+++|.+|+|||||+++|+...
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~ 24 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQT 24 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhc
Confidence 48999999999999999998643
No 463
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=97.55 E-value=0.00013 Score=66.26 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.6
Q ss_pred EeeeecCCCCChhhHHHhhhcCc
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRR 241 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~ 241 (323)
+|+++|..+.|||||+++|+...
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~ 24 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASA 24 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998643
No 464
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=97.54 E-value=0.00034 Score=63.40 Aligned_cols=97 Identities=13% Similarity=0.030 Sum_probs=60.1
Q ss_pred cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHH----HHhCCCCeEEEEeccCCccHHh-----------
Q 020668 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMD----QWLGNRKRILVLNREDMISMAD----------- 164 (323)
Q Consensus 102 ~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~----~~l~~k~~iiVlNK~DLl~~~~----------- 164 (323)
+++|. .++.+........+|++|+|+|..++.+..+. .+. ....+.|+++|.||+||.+...
T Consensus 55 Dt~G~-e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~ 133 (222)
T cd04173 55 DTSGS-SYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLI 133 (222)
T ss_pred eCCCc-HHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCC
Confidence 45666 44544444567899999999998876433221 111 1123679999999999964210
Q ss_pred ---HHHHHHHHHhhC-ceEEEecCcCCCc-chhhhHHHHH
Q 020668 165 ---RNAWATYFAKQG-TKVIFSNGQLGMG-TMKLSRLAKA 199 (323)
Q Consensus 165 ---~~~~~~~~~~~g-~~vi~iSa~~g~g-i~~L~~~l~~ 199 (323)
.++-....++.| ..++.+||+++.+ ++++.+....
T Consensus 134 pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~ 173 (222)
T cd04173 134 PVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATV 173 (222)
T ss_pred ccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHH
Confidence 011112223345 4789999999884 9888766544
No 465
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.53 E-value=0.00021 Score=63.76 Aligned_cols=57 Identities=21% Similarity=0.183 Sum_probs=34.2
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCc-cccccCCCCceeeEEEEEeC---CcEEEEecCCcc
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFG---KDLEFLDSPGII 273 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~-~~~v~~~pgtT~~~~~~~~~---~~~~liDTPGi~ 273 (323)
.++|+++|.+|||||||+|+++... .....+..|.......+..+ -.+.++||||-.
T Consensus 9 ~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~ 69 (215)
T PTZ00132 9 EFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQE 69 (215)
T ss_pred CceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCch
Confidence 5789999999999999998655322 11122222322222222222 247789999963
No 466
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.52 E-value=0.00024 Score=61.82 Aligned_cols=54 Identities=22% Similarity=0.339 Sum_probs=34.6
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE-EEEEeCC---cEEEEecCCc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGI 272 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~~---~~~liDTPGi 272 (323)
+||+++|.+|||||||++++.+..- .....|.+..+. ..+.++. .+.++||+|-
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~ 59 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCY-PETYVPTVFENYTASFEIDEQRIELSLWDTSGS 59 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC-CCCcCCceEEEEEEEEEECCEEEEEEEEECCCc
Confidence 4799999999999999999986532 222223221121 1223332 4779999996
No 467
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.50 E-value=0.00037 Score=62.20 Aligned_cols=97 Identities=12% Similarity=-0.054 Sum_probs=60.9
Q ss_pred ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHhCCCCeEEEEeccCCccHHhHHHHHHHHHhh
Q 020668 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ 175 (323)
Q Consensus 101 ~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l~~k~~iiVlNK~DLl~~~~~~~~~~~~~~~ 175 (323)
.+++|+ .++..........+|.+++++|.....+..+ ..+.....+.|++++.||+|+.+.....+...+....
T Consensus 63 ~Dt~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~ 141 (215)
T PTZ00132 63 WDTAGQ-EKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKK 141 (215)
T ss_pred EECCCc-hhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHc
Confidence 345666 3343333455678999999999875443211 1111122467889999999986543222223334445
Q ss_pred CceEEEecCcCCCcchhhhHHHH
Q 020668 176 GTKVIFSNGQLGMGTMKLSRLAK 198 (323)
Q Consensus 176 g~~vi~iSa~~g~gi~~L~~~l~ 198 (323)
+..++.+|+++|.|++++...+.
T Consensus 142 ~~~~~e~Sa~~~~~v~~~f~~ia 164 (215)
T PTZ00132 142 NLQYYDISAKSNYNFEKPFLWLA 164 (215)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHH
Confidence 67789999999999987665543
No 468
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.50 E-value=8e-05 Score=73.44 Aligned_cols=55 Identities=29% Similarity=0.373 Sum_probs=38.1
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccc--------------c------------------CCCCceeeEEEEEe---CC
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPA--------------A------------------PRPGVTRVLKWVRF---GK 262 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v--------------~------------------~~pgtT~~~~~~~~---~~ 262 (323)
++|+++|.+|+|||||+++|+....... + ..-|+|++.....+ +.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 3689999999999999999974321110 0 01366777654443 45
Q ss_pred cEEEEecCCc
Q 020668 263 DLEFLDSPGI 272 (323)
Q Consensus 263 ~~~liDTPGi 272 (323)
.+.|+||||.
T Consensus 81 ~~~liDtPGh 90 (406)
T TIGR02034 81 KFIVADTPGH 90 (406)
T ss_pred EEEEEeCCCH
Confidence 6889999995
No 469
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=97.50 E-value=0.00023 Score=59.83 Aligned_cols=54 Identities=37% Similarity=0.545 Sum_probs=34.7
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCC--CceeeEEEEEeCC---cEEEEecCCcc
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRP--GVTRVLKWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~p--gtT~~~~~~~~~~---~~~liDTPGi~ 273 (323)
||+++|.++||||||++++.+..- .-...| |.......+.... .+.++||+|--
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 59 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF-PENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQE 59 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST-TSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSG
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc-ccccccccccccccccccccccccccccccccccc
Confidence 589999999999999999997542 222222 2222222233322 47899999964
No 470
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=97.46 E-value=0.00024 Score=61.97 Aligned_cols=83 Identities=17% Similarity=0.039 Sum_probs=52.6
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcH--HHHH----HhCCCCeEEEEeccCCccHHh------------HHHHHHHHHhhC-c
Q 020668 117 QLKLMDVVIEVRDARIPLSTTHP--LMDQ----WLGNRKRILVLNREDMISMAD------------RNAWATYFAKQG-T 177 (323)
Q Consensus 117 ~i~~aDlIl~VvDar~~~~~~~~--~i~~----~l~~k~~iiVlNK~DLl~~~~------------~~~~~~~~~~~g-~ 177 (323)
.+..+|++++++|.....+..+. .+.. ...+.|+++|.||+|+.+... ........++.+ .
T Consensus 69 ~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (187)
T cd04129 69 SYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAK 148 (187)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCc
Confidence 45789999999998654322111 1111 123679999999999854210 111112223345 3
Q ss_pred eEEEecCcCCCcchhhhHHHHH
Q 020668 178 KVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 178 ~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
.++.+||++|.|++++.+.+.+
T Consensus 149 ~~~e~Sa~~~~~v~~~f~~l~~ 170 (187)
T cd04129 149 KYMECSALTGEGVDDVFEAATR 170 (187)
T ss_pred EEEEccCCCCCCHHHHHHHHHH
Confidence 6899999999999998777654
No 471
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=97.46 E-value=0.00031 Score=59.08 Aligned_cols=97 Identities=12% Similarity=0.055 Sum_probs=63.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhC-CCCeEEEEeccCCccHHh--HHHHHHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG-NRKRILVLNREDMISMAD--RNAWATY 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l~-~k~~iiVlNK~DLl~~~~--~~~~~~~ 171 (323)
+-+++|+ .++.......+.++|.+|+++|..+..+..+. .+..... +.|+++|.||.|+.+..+ .++..++
T Consensus 52 i~D~~g~-~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~ 130 (162)
T PF00071_consen 52 IWDTSGQ-ERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEF 130 (162)
T ss_dssp EEEETTS-GGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHH
T ss_pred ccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccchhhHHHHH
Confidence 3346776 34444445668999999999998765332221 1122222 478999999999886332 2233344
Q ss_pred HHhhCceEEEecCcCCCcchhhhHHH
Q 020668 172 FAKQGTKVIFSNGQLGMGTMKLSRLA 197 (323)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~l 197 (323)
.++.+..++.+|++++.|+.++...+
T Consensus 131 ~~~~~~~~~e~Sa~~~~~v~~~f~~~ 156 (162)
T PF00071_consen 131 AKELGVPYFEVSAKNGENVKEIFQEL 156 (162)
T ss_dssp HHHTTSEEEEEBTTTTTTHHHHHHHH
T ss_pred HHHhCCEEEEEECCCCCCHHHHHHHH
Confidence 55566889999999999998865543
No 472
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=97.46 E-value=0.00033 Score=62.39 Aligned_cols=62 Identities=19% Similarity=0.262 Sum_probs=44.0
Q ss_pred cccccchHHHHHHHHHHHHhhc-CeEEEEEeCCCCCCCCc---HHHHHHh-------CCCCeEEEEeccCCccH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLM-DVVIEVRDARIPLSTTH---PLMDQWL-------GNRKRILVLNREDMISM 162 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~a-DlIl~VvDar~~~~~~~---~~i~~~l-------~~k~~iiVlNK~DLl~~ 162 (323)
+-++||| .++...+...+..+ +.+|+|+|+........ ..+..++ .+.|+++|.||+|+...
T Consensus 52 l~D~pG~-~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 52 LVDVPGH-PKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred EEECCCC-HHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 5678999 46777777888888 99999999987532111 1122211 26799999999998754
No 473
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.00077 Score=59.43 Aligned_cols=130 Identities=13% Similarity=0.095 Sum_probs=85.8
Q ss_pred CCCCCCCcchhhHhhhcccccCcceeeeeccccc----cc-cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH
Q 020668 66 NSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP----VQ-WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL 140 (323)
Q Consensus 66 ~~~~~~~~~~~~~e~e~~~~~~~~~~~~~~~l~~----i~-~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~ 140 (323)
+--+-.|+++.-.| .+..|+.+|+..-+-.+.. +| |.-..+++++..+...-+.|+-||+|.|...-.+..+
T Consensus 23 tCL~~Rf~~~~f~e-~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~-- 99 (205)
T KOG0084|consen 23 TCLLLRFKDDTFTE-SYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNN-- 99 (205)
T ss_pred hhhhhhhccCCcch-hhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhh--
Confidence 33345566665554 4556778877666555332 33 5555558888888899999999999999876443322
Q ss_pred HHHHhC--------CCCeEEEEeccCCccHHhHH--HHHHHHHhhCce-EEEecCcCCCcchhhhHHHH
Q 020668 141 MDQWLG--------NRKRILVLNREDMISMADRN--AWATYFAKQGTK-VIFSNGQLGMGTMKLSRLAK 198 (323)
Q Consensus 141 i~~~l~--------~k~~iiVlNK~DLl~~~~~~--~~~~~~~~~g~~-vi~iSa~~g~gi~~L~~~l~ 198 (323)
+..|+. +.+.++|.||+|+.+..... +-.++..+++.. ++.+||+.+.++++....+.
T Consensus 100 v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la 168 (205)
T KOG0084|consen 100 VKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTLA 168 (205)
T ss_pred HHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHHH
Confidence 333332 46999999999998764321 222333455666 88999999999887655443
No 474
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=97.44 E-value=0.00035 Score=61.65 Aligned_cols=56 Identities=16% Similarity=0.188 Sum_probs=36.7
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCcc
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (323)
.+||+++|..|||||||++++..... .....|..+.+. ..+.++. .+.++||||-.
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~ 66 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGST-ESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQG 66 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 57899999999999999999986432 111112233332 2233332 46789999974
No 475
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=97.44 E-value=0.0013 Score=55.49 Aligned_cols=119 Identities=10% Similarity=0.013 Sum_probs=76.4
Q ss_pred cccccCcceeeeeccccc-cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC--CCCcHHHHHHhC-----CCCeEEE
Q 020668 82 DWADLDADLYYWTKSLRP-VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL--STTHPLMDQWLG-----NRKRILV 153 (323)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~-i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~--~~~~~~i~~~l~-----~k~~iiV 153 (323)
-..+..++.+..+..-.. .-|.-|.+.++...-...-+.+++|++++|+.++. +....++..+|. +.|++++
T Consensus 49 miptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVL 128 (186)
T KOG0075|consen 49 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVL 128 (186)
T ss_pred hcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEe
Confidence 344566666666555443 33443333555554456678999999999998754 333445656553 6899999
Q ss_pred EeccCCccHHhHHHHHHHHH-----hhCceEEEecCcCCCcchhhhHHHHHh
Q 020668 154 LNREDMISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 154 lNK~DLl~~~~~~~~~~~~~-----~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
.||.|+-..-...+..+.+- .....++.+|++...+++.+.+.+.+.
T Consensus 129 GnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~h 180 (186)
T KOG0075|consen 129 GNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEH 180 (186)
T ss_pred cccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHH
Confidence 99999876543333333321 011457889999999999888776554
No 476
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=97.43 E-value=0.00029 Score=62.94 Aligned_cols=55 Identities=33% Similarity=0.397 Sum_probs=35.5
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCC--CceeeEEEEEeC------C--cEEEEecCCcc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP--GVTRVLKWVRFG------K--DLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~p--gtT~~~~~~~~~------~--~~~liDTPGi~ 273 (323)
++|+++|-++||||||++++.+... .....| |++.....+..+ . .+.|+||+|--
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f-~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e 65 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQV-LGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSE 65 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-CCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCch
Confidence 3689999999999999999997542 212222 222222233332 2 37799999963
No 477
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=97.43 E-value=0.00031 Score=62.73 Aligned_cols=54 Identities=30% Similarity=0.378 Sum_probs=35.3
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeC---CcEEEEecCCcc
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG---KDLEFLDSPGII 273 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~---~~~~liDTPGi~ 273 (323)
.|+++|.+|||||||++++....- .....|.++.+. ..+.++ -.+.++||+|--
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f-~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe 60 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTF-CEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQE 60 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC-CCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCch
Confidence 589999999999999999986432 222223333332 233443 246799999963
No 478
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=97.40 E-value=0.00038 Score=60.74 Aligned_cols=54 Identities=26% Similarity=0.311 Sum_probs=33.2
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE-EEEEeC---CcEEEEecCCcc
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFG---KDLEFLDSPGII 273 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~---~~~~liDTPGi~ 273 (323)
+++++|.+|+|||||+|+|..... .-...|.+.... ..+.+. ..+.++||||..
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~ 60 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEF-PEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQE 60 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CcccCCcccceEEEEEEECCEEEEEEEEECCCCh
Confidence 689999999999999999984332 111122211111 122222 236789999964
No 479
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.00019 Score=63.00 Aligned_cols=117 Identities=15% Similarity=0.113 Sum_probs=77.5
Q ss_pred cccCcceeeeeccccc-----cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--------CCCe
Q 020668 84 ADLDADLYYWTKSLRP-----VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--------NRKR 150 (323)
Q Consensus 84 ~~~~~~~~~~~~~l~~-----i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--------~k~~ 150 (323)
.++.+.|+.-+-..-. ..|.-+-++++........+.|+.+|+|.|..+..+.. ....|+. +.-+
T Consensus 36 ~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~--~aK~WvkeL~~~~~~~~vi 113 (200)
T KOG0092|consen 36 PTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFE--KAKNWVKELQRQASPNIVI 113 (200)
T ss_pred cccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHH--HHHHHHHHHHhhCCCCeEE
Confidence 3455555443332211 35665555777777777889999999999987654322 2223322 2234
Q ss_pred EEEEeccCCccHH--hHHHHHHHHHhhCceEEEecCcCCCcchhhhHHHHHhhh
Q 020668 151 ILVLNREDMISMA--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (323)
Q Consensus 151 iiVlNK~DLl~~~--~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (323)
.+|.||+||.... +.++-..+..+.|..++.+||++|.|+++|...|.+...
T Consensus 114 alvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~lp 167 (200)
T KOG0092|consen 114 ALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIAEKLP 167 (200)
T ss_pred EEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHHHhcc
Confidence 5699999999843 344555667778888999999999999998777665443
No 480
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=97.39 E-value=0.00069 Score=70.89 Aligned_cols=93 Identities=17% Similarity=0.171 Sum_probs=74.0
Q ss_pred CCCcchhhHhhhcccccCcc--eeeeec-cccccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC
Q 020668 70 SNGSIEAYEEECDWADLDAD--LYYWTK-SLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG 146 (323)
Q Consensus 70 ~~~~~~~~~e~e~~~~~~~~--~~~~~~-~l~~i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~ 146 (323)
+-+.|-.-.|++.++++..+ .+.|.. -+--+.++||| ..+..++...++-+|.++.|+|+..+...--..+.+...
T Consensus 47 ~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH-VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~ 125 (697)
T COG0480 47 AATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH-VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQAD 125 (697)
T ss_pred CccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc-cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHh
Confidence 55677777799999988776 455553 34448899999 678999999999999999999999888776666555544
Q ss_pred --CCCeEEEEeccCCccHH
Q 020668 147 --NRKRILVLNREDMISMA 163 (323)
Q Consensus 147 --~k~~iiVlNK~DLl~~~ 163 (323)
+.|+++++||+|.+..+
T Consensus 126 ~~~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 126 KYGVPRILFVNKMDRLGAD 144 (697)
T ss_pred hcCCCeEEEEECccccccC
Confidence 67999999999987543
No 481
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.38 E-value=0.00032 Score=65.83 Aligned_cols=100 Identities=15% Similarity=0.180 Sum_probs=74.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCC----CCCCCCcHHHHHHhCCCCeEEEEeccCCccHHhHHHH----HHH
Q 020668 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDAR----IPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAW----ATY 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar----~~~~~~~~~i~~~l~~k~~iiVlNK~DLl~~~~~~~~----~~~ 171 (323)
.-++||| .-....|...+.-.|.+++++.+. .|.++++..-.+.+.-|+++++-||+||+..++..+. .++
T Consensus 129 fVDCPGH-DiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~LkhiiilQNKiDli~e~~A~eq~e~I~kF 207 (466)
T KOG0466|consen 129 FVDCPGH-DILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLIKESQALEQHEQIQKF 207 (466)
T ss_pred eccCCch-HHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEEEechhhhhhHHHHHHHHHHHHHH
Confidence 5589999 556677777888899999999875 3456666666667778999999999999987653332 223
Q ss_pred HHh---hCceEEEecCcCCCcchhhhHHHHHh
Q 020668 172 FAK---QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 172 ~~~---~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
++. .|.+++++||.-+-|++-+.+++.+.
T Consensus 208 i~~t~ae~aPiiPisAQlkyNId~v~eyivkk 239 (466)
T KOG0466|consen 208 IQGTVAEGAPIIPISAQLKYNIDVVCEYIVKK 239 (466)
T ss_pred HhccccCCCceeeehhhhccChHHHHHHHHhc
Confidence 322 23579999999999999988887654
No 482
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.37 E-value=0.00054 Score=62.88 Aligned_cols=96 Identities=21% Similarity=0.281 Sum_probs=0.0
Q ss_pred CcchhhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhhc----------------------------
Q 020668 188 MGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLK---------------------------- 239 (323)
Q Consensus 188 ~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~---------------------------- 239 (323)
+.+..|.+.+.++........... ..++++||.+|+||||++|+|.+
T Consensus 2 ~~~~~l~~~i~~l~~~~G~~~~i~-----~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~ 76 (240)
T smart00053 2 EKLIPLVNKLQDAFSALGQEKDLD-----LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYA 76 (240)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCCC-----CCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcce
Q ss_pred ----------------------CccccccCCCCceeeEEEEEe----CCcEEEEecCCccCCCCCCHHHHHHHHh
Q 020668 240 ----------------------RRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGIIPMRISDQAAAIKLAI 288 (323)
Q Consensus 240 ----------------------~~~~~v~~~pgtT~~~~~~~~----~~~~~liDTPGi~~~~~~d~~~~~~La~ 288 (323)
......+...+.+.+...+++ ..++.|+||||+......+........+
T Consensus 77 ~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i 151 (240)
T smart00053 77 EFLHCKGKKFTDFDEVRNEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQI 151 (240)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHH
No 483
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=97.36 E-value=0.00041 Score=62.87 Aligned_cols=54 Identities=24% Similarity=0.383 Sum_probs=34.8
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE-EEEEeCC---cEEEEecCCc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGI 272 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~~---~~~liDTPGi 272 (323)
++|++||.+|||||||++++.+..- .....|.+.-+. ..+.++. .+.|+||+|-
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f-~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~ 59 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAY-PGSYVPTVFENYTASFEIDKRRIELNMWDTSGS 59 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCccCCccccceEEEEEECCEEEEEEEEeCCCc
Confidence 4799999999999999999986532 222223222121 1223322 4678999996
No 484
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=97.34 E-value=0.00024 Score=73.36 Aligned_cols=56 Identities=29% Similarity=0.385 Sum_probs=38.4
Q ss_pred EeeeecCCCCChhhHHHhhhcCcccc--------cc------CCCCceeeEEEEEe-----C---CcEEEEecCCccC
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMCP--------AA------PRPGVTRVLKWVRF-----G---KDLEFLDSPGIIP 274 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~--------v~------~~pgtT~~~~~~~~-----~---~~~~liDTPGi~~ 274 (323)
+++++|.+|+|||||+++|+...... +. ...|+|.....+.+ + ..+.|+||||...
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 68999999999999999998642211 11 12377776543322 2 2478999999964
No 485
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=97.29 E-value=0.00025 Score=61.54 Aligned_cols=55 Identities=25% Similarity=0.494 Sum_probs=38.3
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe-CCcEEEEecCCc
Q 020668 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGI 272 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~liDTPGi 272 (323)
...+|+++|..|+||||+++.|.......+.+.-|. +...+.. +..+.++|.+|=
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~--~~~~i~~~~~~~~~~d~gG~ 68 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGF--NIEEIKYKGYSLTIWDLGGQ 68 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSE--EEEEEEETTEEEEEEEESSS
T ss_pred cEEEEEEECCCccchHHHHHHhhhccccccCccccc--ccceeeeCcEEEEEEecccc
Confidence 357899999999999999999997654443332232 2333333 346889999985
No 486
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=97.27 E-value=0.00069 Score=59.46 Aligned_cols=55 Identities=22% Similarity=0.304 Sum_probs=34.2
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEE-EEEeCC---cEEEEecCCc
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK-WVRFGK---DLEFLDSPGI 272 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~-~~~~~~---~~~liDTPGi 272 (323)
.++|+++|.+|||||||++++....- .-...|....... .+.++. .+.++||||-
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 61 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAF-PKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQ 61 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCC-CcCCCCceEeeeEEEEEECCEEEEEEEEECCCc
Confidence 36899999999999999999986432 1111221111111 122332 3779999995
No 487
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=97.26 E-value=0.00077 Score=57.40 Aligned_cols=81 Identities=16% Similarity=0.028 Sum_probs=51.4
Q ss_pred HhhcCeEEEEEeCCCCCCCCc-HH-HHHHh-----CCCCeEEEEeccCCcc--HHhH-HHHHHHHH-hh-CceEEEecCc
Q 020668 118 LKLMDVVIEVRDARIPLSTTH-PL-MDQWL-----GNRKRILVLNREDMIS--MADR-NAWATYFA-KQ-GTKVIFSNGQ 185 (323)
Q Consensus 118 i~~aDlIl~VvDar~~~~~~~-~~-i~~~l-----~~k~~iiVlNK~DLl~--~~~~-~~~~~~~~-~~-g~~vi~iSa~ 185 (323)
.+.+|.+++|+|..+..+..+ .. +.... .+.|+++|.||+|+.. ..+. .+..+.+. +. +..++.+||+
T Consensus 63 ~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk 142 (158)
T cd04103 63 ASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCAT 142 (158)
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecC
Confidence 467999999999877654333 11 11111 2468999999999842 1111 11122232 33 3678999999
Q ss_pred CCCcchhhhHHHH
Q 020668 186 LGMGTMKLSRLAK 198 (323)
Q Consensus 186 ~g~gi~~L~~~l~ 198 (323)
+|.|++++.+.+.
T Consensus 143 ~~~~i~~~f~~~~ 155 (158)
T cd04103 143 YGLNVERVFQEAA 155 (158)
T ss_pred CCCCHHHHHHHHH
Confidence 9999998876653
No 488
>PRK10218 GTP-binding protein; Provisional
Probab=97.26 E-value=0.00042 Score=71.63 Aligned_cols=57 Identities=21% Similarity=0.349 Sum_probs=39.6
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccc---------------cCCCCceeeEEEEEe---CCcEEEEecCCccC
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPA---------------APRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v---------------~~~pgtT~~~~~~~~---~~~~~liDTPGi~~ 274 (323)
.+|+++|..++|||||+++|+....... ....|+|.......+ +..+.++||||...
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~d 80 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHAD 80 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcch
Confidence 4699999999999999999996322110 123467766543332 45688999999753
No 489
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=97.25 E-value=0.00019 Score=62.99 Aligned_cols=62 Identities=19% Similarity=0.266 Sum_probs=39.7
Q ss_pred ccccccchHHHHHHHHHHH---HhhcCeEEEEEeCCCCCCCCcHHHHHHhC-----------CCCeEEEEeccCCccH
Q 020668 99 PVQWYPGHIAKTEKELKDQ---LKLMDVVIEVRDARIPLSTTHPLMDQWLG-----------NRKRILVLNREDMISM 162 (323)
Q Consensus 99 ~i~~~PGh~~k~~~~l~~~---i~~aDlIl~VvDar~~~~~~~~~i~~~l~-----------~k~~iiVlNK~DLl~~ 162 (323)
.+.++||| .+.+.++.+. +..+..||+|+|+.... ..-.+.+++|. ..|++|+.||.|+...
T Consensus 52 ~lvD~PGH-~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~-~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 52 RLVDIPGH-PRLRSKLLDELKYLSNAKGIIFVVDSSTDQ-KELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp CEEEETT--HCCCHHHHHHHHHHGGEEEEEEEEETTTHH-HHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred EEEECCCc-HHHHHHHHHhhhchhhCCEEEEEEeCccch-hhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 38899999 5566666655 88999999999986321 11123333331 4589999999999764
No 490
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=97.22 E-value=0.00049 Score=72.74 Aligned_cols=90 Identities=17% Similarity=0.060 Sum_probs=65.7
Q ss_pred CCcchhhHhhhcccccCcceeee----ecc--ccccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHH
Q 020668 71 NGSIEAYEEECDWADLDADLYYW----TKS--LRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW 144 (323)
Q Consensus 71 ~~~~~~~~e~e~~~~~~~~~~~~----~~~--l~~i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~ 144 (323)
.+.|-...|++...+++.....+ ... .-.+-++|||. ++...+...+..+|.+|+|+|+..+.......+...
T Consensus 55 ~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~-~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~ 133 (720)
T TIGR00490 55 LYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV-DFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ 133 (720)
T ss_pred eecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc-ccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH
Confidence 34566677888888888765432 211 22367899995 466788889999999999999998876665555554
Q ss_pred h--CCCCeEEEEeccCCcc
Q 020668 145 L--GNRKRILVLNREDMIS 161 (323)
Q Consensus 145 l--~~k~~iiVlNK~DLl~ 161 (323)
+ .+.|+++++||+|+..
T Consensus 134 ~~~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 134 ALKENVKPVLFINKVDRLI 152 (720)
T ss_pred HHHcCCCEEEEEEChhccc
Confidence 3 2678899999999863
No 491
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=97.22 E-value=0.00089 Score=58.62 Aligned_cols=55 Identities=22% Similarity=0.346 Sum_probs=35.1
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE-EEEEeCC---cEEEEecCCc
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGI 272 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~~---~~~liDTPGi 272 (323)
.++|+++|-++||||||++++....- .....|.+.-+. ..+.++. .+.|+||+|-
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f-~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~ 63 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCF-PENYVPTVFENYTASFEIDTQRIELSLWDTSGS 63 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCC-CCccCCceeeeeEEEEEECCEEEEEEEEECCCc
Confidence 46899999999999999999986532 111122111111 1223332 3779999996
No 492
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=97.22 E-value=0.00079 Score=57.33 Aligned_cols=53 Identities=28% Similarity=0.263 Sum_probs=33.2
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceee--EEEEEeCC---cEEEEecCCcc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~---~~~liDTPGi~ 273 (323)
++|+++|.+|||||||+++++...-... .+ +|.. ...+.++. .+.+.||+|--
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~--~~-~~~~~~~~~i~~~~~~~~l~i~D~~g~~ 58 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQL--ES-PEGGRFKKEVLVDGQSHLLLIRDEGGAP 58 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCC--CC-CCccceEEEEEECCEEEEEEEEECCCCC
Confidence 3689999999999999999875432111 11 1111 12233332 37789999984
No 493
>PLN00023 GTP-binding protein; Provisional
Probab=97.20 E-value=0.00077 Score=64.43 Aligned_cols=57 Identities=32% Similarity=0.417 Sum_probs=37.4
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCcccc-ccCCCCceeeEEEEEeCC----------------cEEEEecCCcc
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK----------------DLEFLDSPGII 273 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~-v~~~pgtT~~~~~~~~~~----------------~~~liDTPGi~ 273 (323)
.+||+++|..|||||||++++.+..... ..+.-|.+.....+.++. .+.|+||+|--
T Consensus 21 ~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE 94 (334)
T PLN00023 21 QVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE 94 (334)
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence 5789999999999999999999754211 122223333333333321 27899999953
No 494
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=97.20 E-value=0.00037 Score=68.71 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=21.6
Q ss_pred ceEeeeecCCCCChhhHHHhhhcC
Q 020668 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~ 240 (323)
.++|+++|.+|+|||||+++|.+.
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt~~ 27 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALTGV 27 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHhCe
Confidence 578999999999999999999753
No 495
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.20 E-value=0.00044 Score=63.62 Aligned_cols=57 Identities=35% Similarity=0.517 Sum_probs=44.0
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE-E-EE-EeCCcEEEEecCCccCC
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-K-WV-RFGKDLEFLDSPGIIPM 275 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~-~-~~-~~~~~~~liDTPGi~~~ 275 (323)
-+|+|+|+|.|||||+++.|.+.. ..+...-|||.-. + .+ +.+.++.|.|-|||+..
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~-s~vasyefttl~~vpG~~~y~gaKiqlldlpgiieg 119 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTF-SEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEG 119 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCC-CccccccceeEEEecceEeccccceeeecCcchhcc
Confidence 379999999999999999999754 3666666776542 1 22 34778999999999853
No 496
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=97.19 E-value=0.00077 Score=58.74 Aligned_cols=55 Identities=22% Similarity=0.284 Sum_probs=34.7
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE-EEEEeC---CcEEEEecCCcc
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFG---KDLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~---~~~~liDTPGi~ 273 (323)
+|++++|.++||||||++++.... +.-...|.+-... ..+..+ -++.++||+|--
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~-f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~ 60 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQE 60 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC-CCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCc
Confidence 479999999999999999999643 2222222111111 122232 246799999964
No 497
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=97.19 E-value=0.00044 Score=61.43 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.4
Q ss_pred eEeeeecCCCCChhhHHHhhhcC
Q 020668 218 VRAGIVGYPNVGKSSLINRLLKR 240 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~ 240 (323)
++|+++|..++|||||+.+|.+.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~ 23 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGV 23 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999754
No 498
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.18 E-value=0.0017 Score=57.46 Aligned_cols=83 Identities=13% Similarity=0.092 Sum_probs=53.3
Q ss_pred HhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCeEEEEeccCCccHHh---------HHHHHH----H----HHhhC--
Q 020668 118 LKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD---------RNAWAT----Y----FAKQG-- 176 (323)
Q Consensus 118 i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~iiVlNK~DLl~~~~---------~~~~~~----~----~~~~g-- 176 (323)
+..+|++++|.|. .++..+..+.+.+. ++++++|+||+|+....+ .++.++ . +...+
T Consensus 78 ~~~~d~~l~v~~~--~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~ 155 (197)
T cd04104 78 FSEYDFFIIISST--RFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVS 155 (197)
T ss_pred ccCcCEEEEEeCC--CCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCCC
Confidence 5678999998654 35666666666655 689999999999964321 112222 1 22212
Q ss_pred -ceEEEecCc--CCCcchhhhHHHHHhhh
Q 020668 177 -TKVIFSNGQ--LGMGTMKLSRLAKALAS 202 (323)
Q Consensus 177 -~~vi~iSa~--~g~gi~~L~~~l~~l~~ 202 (323)
..++.+|+. .+.++..|.+.+....+
T Consensus 156 ~p~v~~vS~~~~~~~~~~~l~~~~~~~l~ 184 (197)
T cd04104 156 EPPVFLVSNFDPSDYDFPKLRETLLKDLP 184 (197)
T ss_pred CCCEEEEeCCChhhcChHHHHHHHHHHhh
Confidence 357888988 56788888776655443
No 499
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=97.17 E-value=0.00055 Score=70.68 Aligned_cols=55 Identities=27% Similarity=0.422 Sum_probs=37.9
Q ss_pred EeeeecCCCCChhhHHHhhhcCccc-----ccc----------CCCCceeeEEE---EEeCCcEEEEecCCcc
Q 020668 219 RAGIVGYPNVGKSSLINRLLKRRMC-----PAA----------PRPGVTRVLKW---VRFGKDLEFLDSPGII 273 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~-----~v~----------~~pgtT~~~~~---~~~~~~~~liDTPGi~ 273 (323)
+|+++|..++|||||+++|+..... .+. ..-|+|..... .+.+..+.|+||||..
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~ 75 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHA 75 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHH
Confidence 5899999999999999999853211 011 12367766432 2335678999999974
No 500
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.16 E-value=0.00058 Score=68.24 Aligned_cols=57 Identities=21% Similarity=0.316 Sum_probs=40.3
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccc------------------------------cccCCCCceeeEEEEEe---CC
Q 020668 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC------------------------------PAAPRPGVTRVLKWVRF---GK 262 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~------------------------------~v~~~pgtT~~~~~~~~---~~ 262 (323)
..++|+++|..++|||||+.+|+..... ......|+|.+.....+ +.
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~ 85 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence 3578999999999999999998741100 00113478888655544 34
Q ss_pred cEEEEecCCc
Q 020668 263 DLEFLDSPGI 272 (323)
Q Consensus 263 ~~~liDTPGi 272 (323)
.+.|+||||-
T Consensus 86 ~i~lIDtPGh 95 (446)
T PTZ00141 86 YFTIIDAPGH 95 (446)
T ss_pred EEEEEECCCh
Confidence 6889999994
Done!