Query 020669
Match_columns 323
No_of_seqs 56 out of 58
Neff 2.4
Searched_HMMs 46136
Date Fri Mar 29 04:13:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020669.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020669hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0921 Dosage compensation co 76.4 18 0.0004 40.9 9.9 10 5-14 1002-1011(1282)
2 COG3059 Predicted membrane pro 35.8 35 0.00076 31.7 2.9 24 293-319 155-178 (182)
3 PF08035 Op_neuropeptide: Opio 32.5 24 0.00053 24.6 1.1 21 279-299 2-24 (31)
4 KOG3875 Peroxisomal biogenesis 26.4 1.9E+02 0.004 29.5 6.3 14 54-69 22-35 (362)
5 PF04224 DUF417: Protein of un 24.5 71 0.0015 29.4 2.9 24 292-318 151-174 (175)
6 KOG1316 Argininosuccinate lyas 19.0 66 0.0014 33.3 1.6 44 267-310 291-351 (464)
7 PRK13896 cobyrinic acid a,c-di 16.6 64 0.0014 32.6 0.9 30 287-316 104-134 (433)
8 PF15228 DAP: Death-associated 11.1 1.5E+02 0.0032 24.5 1.5 25 38-62 53-79 (97)
9 PF01882 DUF58: Protein of unk 9.3 3.1E+02 0.0067 20.4 2.5 62 259-321 25-86 (86)
10 PF10728 DUF2520: Domain of un 8.1 4.8E+02 0.01 22.1 3.5 25 298-322 42-66 (132)
No 1
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=76.37 E-value=18 Score=40.93 Aligned_cols=10 Identities=20% Similarity=0.305 Sum_probs=4.2
Q ss_pred ccccccceee
Q 020669 5 THHRRRQMVT 14 (323)
Q Consensus 5 ~~~~~~~~~~ 14 (323)
-||..|..+|
T Consensus 1002 ~y~ekrkvLt 1011 (1282)
T KOG0921|consen 1002 YYVEKRKVLT 1011 (1282)
T ss_pred eeccceeEEe
Confidence 3444444443
No 2
>COG3059 Predicted membrane protein [Function unknown]
Probab=35.79 E-value=35 Score=31.67 Aligned_cols=24 Identities=42% Similarity=0.660 Sum_probs=19.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhHhhhh
Q 020669 293 MVMRDVVMMMNIAAGLMSMAMDARRRY 319 (323)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (323)
.|..|+.|| |.+||.||-||+|-+
T Consensus 155 lvlKDilml---Agal~v~~~~a~r~l 178 (182)
T COG3059 155 LVLKDILML---AGALMVAADDANRIL 178 (182)
T ss_pred hhHHHHHHH---HHHHHHHHhhHHHhh
Confidence 467788874 789999999999864
No 3
>PF08035 Op_neuropeptide: Opioids neuropeptide; InterPro: IPR013532 Pro-opiomelanocortin is present in high levels in the pituitary and is processed into 3 major peptide families: adrenocorticotrophin (ACTH); alpha-, beta- and gamma-melanocyte- stimulating hormones (MSH); and beta-endorphin []. ACTH regulates the synthesis and release of glucocorticoids and, to some extent, aldosterone in the adrenal cortex. It is synthesised and released in response to corticotrophin-releasing factor at times of stress (i.e. heat, cold, infection, etc.), its release leading to increased metabolism. The action of MSH in man is poorly understood, but it may be involved in temperature regulation []. Full activity of ACTH resides in the first 20 N-terminal amino acids, the first 13 of which are identical to alpha-MSH [, ]. This region corresponds to the conserved YGG motif that is found in a wide variety of opioid neuropeptides such as enkephalin
Probab=32.53 E-value=24 Score=24.59 Aligned_cols=21 Identities=29% Similarity=0.727 Sum_probs=17.6
Q ss_pred cccccc--cCcCCceehhhhHHH
Q 020669 279 GGLMTK--KGIRSPVVMVMRDVV 299 (323)
Q Consensus 279 ~~~~~~--~~~~~~~~~~~~~~~ 299 (323)
||+|+. .-...|.|.++|+|+
T Consensus 2 GGFM~s~~e~s~~PLvtlfkn~i 24 (31)
T PF08035_consen 2 GGFMKSWDERSHKPLVTLFKNVI 24 (31)
T ss_pred CccccccccccCCchHHHHHHHH
Confidence 789988 566789999999975
No 4
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.38 E-value=1.9e+02 Score=29.51 Aligned_cols=14 Identities=43% Similarity=0.904 Sum_probs=7.4
Q ss_pred CCCCCCCCCCCCCCCC
Q 020669 54 PGRPQPQPAYGFQPGM 69 (323)
Q Consensus 54 ~~rpkPrPaYGf~p~~ 69 (323)
+.-|-|+| +|+-.+
T Consensus 22 ~P~plP~p--~f~~s~ 35 (362)
T KOG3875|consen 22 GPSPLPRP--GFQSSV 35 (362)
T ss_pred CCCCCCCc--cccccc
Confidence 33445677 565533
No 5
>PF04224 DUF417: Protein of unknown function, DUF417; InterPro: IPR007339 This family of uncharacterised proteins appears to be restricted to proteobacteria.
Probab=24.46 E-value=71 Score=29.40 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=20.0
Q ss_pred ehhhhHHHHHHHHHHHHHHHHHhHhhh
Q 020669 292 VMVMRDVVMMMNIAAGLMSMAMDARRR 318 (323)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (323)
-.|+.|+||+ |++++.|+-|++|-
T Consensus 151 ~fllKDivlL---a~~l~~~~~~~~r~ 174 (175)
T PF04224_consen 151 RFLLKDIVLL---AASLVLLSDSAKRY 174 (175)
T ss_pred chHHHHHHHH---HHHHHHHHHHHHhh
Confidence 4789999985 88999999888873
No 6
>KOG1316 consensus Argininosuccinate lyase [Amino acid transport and metabolism]
Probab=18.99 E-value=66 Score=33.27 Aligned_cols=44 Identities=43% Similarity=0.610 Sum_probs=32.8
Q ss_pred hhccccccc--cc----ccccccccCcCC-----------ceehhhhHHHHHHHHHHHHHH
Q 020669 267 RSMENLRGS--RV----MGGLMTKKGIRS-----------PVVMVMRDVVMMMNIAAGLMS 310 (323)
Q Consensus 267 ~~~~~~~~~--~~----~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 310 (323)
.|||-|||. || +|=|||-|||-| |+.-+..-|.-+|.|++|+++
T Consensus 291 DslELlRgksgrV~gdl~g~lmt~KG~PstYnkDlQeDKep~Fds~~tv~~~l~v~tgv~s 351 (464)
T KOG1316|consen 291 DSLELLRGKSGRVFGDLTGLLMTLKGLPSTYNKDLQEDKEPLFDSSKTVSDSLQVATGVIS 351 (464)
T ss_pred CHHHHhccccceehhhhHHHHHHhcCCccccccchhhhhhHHHhhHHHHHHHHHHHHHHhh
Confidence 467777764 44 455789999975 677777777788999999876
No 7
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=16.63 E-value=64 Score=32.60 Aligned_cols=30 Identities=30% Similarity=0.410 Sum_probs=24.7
Q ss_pred cCCceehhhhHHHHHHHHHHHHHHH-HHhHh
Q 020669 287 IRSPVVMVMRDVVMMMNIAAGLMSM-AMDAR 316 (323)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 316 (323)
+..|||+|.+.-.|..||||-|..+ ..|.+
T Consensus 104 l~~PviLVv~~~~g~~s~aa~l~g~~~~~~~ 134 (433)
T PRK13896 104 LDLPVVLVVDAKAGMESVAATALGFRAYADR 134 (433)
T ss_pred HCCCEEEEEcCcccHHHHHHHHHHHHHHHHh
Confidence 4579999999999999999999886 55543
No 8
>PF15228 DAP: Death-associated protein
Probab=11.08 E-value=1.5e+02 Score=24.53 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=12.9
Q ss_pred ccCCCCCCCCCCCCCCC--CCCCCCCC
Q 020669 38 TSTAPTPDQSLVPVSYP--GRPQPQPA 62 (323)
Q Consensus 38 ~~~~p~~~s~~ePs~Y~--~rpkPrPa 62 (323)
.+..+.=.+.+-|-+=. .|.||+|+
T Consensus 53 isg~~~k~~~dfP~~AvqvaHqKP~P~ 79 (97)
T PF15228_consen 53 ISGAPAKGNHDFPPEAVQVAHQKPRPA 79 (97)
T ss_pred eccccccccccCcHHHHHHhhcCCCcc
Confidence 34444444445452211 27899987
No 9
>PF01882 DUF58: Protein of unknown function DUF58; InterPro: IPR002881 This domain is found in a family of prokaryotic proteins that have no known function. Proteins belonging to this family include hypothetical proteins from eubacteria and archaebacteria. Some of these proteins also contain the Von Willebrand factor, type A domain (see IPR002035 from INTERPRO).
Probab=9.28 E-value=3.1e+02 Score=20.35 Aligned_cols=62 Identities=18% Similarity=0.134 Sum_probs=33.4
Q ss_pred ccccchhhhhcccccccccccccccccCcCCceehhhhHHHHHHHHHHHHHHHHHhHhhhhcc
Q 020669 259 TKAGTAVVRSMENLRGSRVMGGLMTKKGIRSPVVMVMRDVVMMMNIAAGLMSMAMDARRRYGF 321 (323)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (323)
.|.+..+|+.++.-+...++==|=+.....-. .....++-.++.+||.|...+.+....++|
T Consensus 25 Ar~~~l~vk~~~~~~~~~~~i~ld~~~~~~~~-~~~~~~~e~~l~~a~~l~~~~~~~g~~v~L 86 (86)
T PF01882_consen 25 ARTGELMVKEFEEERSQPVWIVLDLSPSMYFG-SNGRSKFERALSAAASLANQALRQGDPVGL 86 (86)
T ss_pred hCCCCcEEEEeecccCCcEEEEEECCCccccC-cCCCCHHHHHHHHHHHHHHHHHhcCCcccC
Confidence 34566667766665554443221111100000 000256677888899988888877766664
No 10
>PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases. ; PDB: 3D1L_A 2I76_A 3DFU_A.
Probab=8.08 E-value=4.8e+02 Score=22.13 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhccc
Q 020669 298 VVMMMNIAAGLMSMAMDARRRYGFE 322 (323)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (323)
.|+..|....|+.+|.+.-...||+
T Consensus 42 av~asNf~~~L~~~a~~ll~~~gi~ 66 (132)
T PF10728_consen 42 AVFASNFLVALYALAAELLEQAGID 66 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-S
T ss_pred HHHHHhhHHHHHHHHHHHHHHcCCC
Done!