Query 020669
Match_columns 323
No_of_seqs 56 out of 58
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 06:27:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020669.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020669hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kdl_A YOPD protein; yersinia, 7.8 1.6E+02 0.0054 19.1 1.3 11 294-304 3-13 (26)
2 3q87_A Putative uncharacterize 7.4 2.1E+02 0.0071 23.8 2.2 35 1-43 1-35 (125)
3 1xg2_B Pectinesterase inhibito 7.3 2.1E+02 0.0071 21.8 2.0 26 286-311 124-149 (153)
4 3v0a_C Llama antibody F12; bot 6.9 1.2E+02 0.004 23.8 0.4 29 32-60 122-152 (152)
5 2cj4_A Invertase inhibitor; pr 6.4 3.2E+02 0.011 20.9 2.7 26 286-311 123-148 (150)
6 2k9p_A Pheromone alpha factor 6.0 4.2E+02 0.014 20.3 3.1 29 281-311 41-69 (80)
7 1x91_A Invertase/pectin methyl 5.8 2.6E+02 0.0091 21.4 1.9 26 286-311 124-149 (153)
8 2eo2_A Adult MALE hypothalamus 4.5 1.7E+02 0.0057 22.7 -0.1 28 17-44 18-49 (71)
9 3te8_A Sensor histidine kinase 3.8 5.3E+02 0.018 20.2 2.3 26 294-319 19-45 (127)
10 3j21_i 50S ribosomal protein L 3.5 2.3E+02 0.008 22.1 0.0 19 252-270 65-83 (83)
No 1
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=7.85 E-value=1.6e+02 Score=19.13 Aligned_cols=11 Identities=27% Similarity=0.594 Sum_probs=8.7
Q ss_pred hhhHHHHHHHH
Q 020669 294 VMRDVVMMMNI 304 (323)
Q Consensus 294 ~~~~~~~~~~~ 304 (323)
.|+||+-+|.-
T Consensus 3 fMkDvlql~qQ 13 (26)
T 1kdl_A 3 FMKDVLRLIEQ 13 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 69999988753
No 2
>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=7.36 E-value=2.1e+02 Score=23.76 Aligned_cols=35 Identities=11% Similarity=-0.027 Sum_probs=21.0
Q ss_pred CcccccccccceeeeeeeecCCcccccccccceeeecccCCCC
Q 020669 1 MRLVTHHRRRQMVTSTTLVPSSRRTRSLQPTLTKLSITSTAPT 43 (323)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 43 (323)
|||+||- |+++. |-.-. .+|+...+++.+....++
T Consensus 1 MkLlThN----~L~c~--vk~~~--~gL~~~~~~~~~~e~efn 35 (125)
T 3q87_A 1 MKPFLLG----LLKCK--RCSFM--TKLILECEKAESNDVDTD 35 (125)
T ss_dssp CCGGGGG----TBCCS--SCSSC--CCEEEEEEEEEECCCC--
T ss_pred Ccccccc----hhhhc--ccccC--CCceEEeeEEEEecccCC
Confidence 8999995 44443 11111 128888888888877766
No 3
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis}
Probab=7.31 E-value=2.1e+02 Score=21.83 Aligned_cols=26 Identities=8% Similarity=0.063 Sum_probs=21.4
Q ss_pred CcCCceehhhhHHHHHHHHHHHHHHH
Q 020669 286 GIRSPVVMVMRDVVMMMNIAAGLMSM 311 (323)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (323)
.+++||.-.+.++..|.+|+..|+.+
T Consensus 124 ~~~~~l~~~~~~~~~l~s~aLai~~~ 149 (153)
T 1xg2_B 124 NIPTQLHQADLKLEDLCDIVLVISNL 149 (153)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888999999999888765
No 4
>3v0a_C Llama antibody F12; botulinum neurotoxin, toxin, neurotoxin associated protein, progenitor toxin complex, VHH bound interlocked complex; HET: MES; 2.70A {Lama glama}
Probab=6.91 E-value=1.2e+02 Score=23.77 Aligned_cols=29 Identities=34% Similarity=0.676 Sum_probs=2.9
Q ss_pred ceeeecccC--CCCCCCCCCCCCCCCCCCCC
Q 020669 32 LTKLSITST--APTPDQSLVPVSYPGRPQPQ 60 (323)
Q Consensus 32 ~~~~~~~~~--~p~~~s~~ePs~Y~~rpkPr 60 (323)
-|+|.+..+ .|.+.-.-.|+||.|.-+||
T Consensus 122 GT~L~V~~~~~~p~p~~~g~~~~~~~~~~~~ 152 (152)
T 3v0a_C 122 GTQVTVSSEPKTPKPQTSGAPVPYPDPLEPR 152 (152)
T ss_dssp CCEEBC-------------------------
T ss_pred CEEEEEeCCCCCCCCccCCCCCCCCCCCCCC
Confidence 345554433 55555566666666654443
No 5
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B*
Probab=6.45 E-value=3.2e+02 Score=20.86 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=20.4
Q ss_pred CcCCceehhhhHHHHHHHHHHHHHHH
Q 020669 286 GIRSPVVMVMRDVVMMMNIAAGLMSM 311 (323)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (323)
+.++||.-...+|..|.+|+..|+.+
T Consensus 123 ~~~~pl~~~~~~~~~l~s~aLaii~~ 148 (150)
T 2cj4_A 123 GSKSPFSALNIAVHELSDVGRAIVRN 148 (150)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHh
Confidence 44789877788888999998887754
No 6
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=5.96 E-value=4.2e+02 Score=20.32 Aligned_cols=29 Identities=10% Similarity=0.440 Sum_probs=21.0
Q ss_pred cccccCcCCceehhhhHHHHHHHHHHHHHHH
Q 020669 281 LMTKKGIRSPVVMVMRDVVMMMNIAAGLMSM 311 (323)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (323)
+.|| .-|+|| .++.-+.+++||.-.++..
T Consensus 41 lltk-krrspi-F~lN~~~L~l~iirs~l~~ 69 (80)
T 2k9p_A 41 ITSR-SRKTPI-FIINQVSLFLIILHSALYF 69 (80)
T ss_dssp HHTC-CSCCCH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHhc-cccChh-hHHHHHHHHHHHHHHHHHH
Confidence 5677 468887 6777888888887766554
No 7
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A
Probab=5.78 E-value=2.6e+02 Score=21.36 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=21.1
Q ss_pred CcCCceehhhhHHHHHHHHHHHHHHH
Q 020669 286 GIRSPVVMVMRDVVMMMNIAAGLMSM 311 (323)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (323)
.+++||.-.+.+|..|..||..|+.+
T Consensus 124 ~~~~~l~~~~~~~~~l~s~aLai~~~ 149 (153)
T 1x91_A 124 SVDSSVVNNSKTIKNLCGIALVISNM 149 (153)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHhHHHHHHHHHHHHHHHH
Confidence 57788888888898899888887764
No 8
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=4.51 E-value=1.7e+02 Score=22.72 Aligned_cols=28 Identities=36% Similarity=0.528 Sum_probs=21.8
Q ss_pred eeecCCcccccccc----cceeeecccCCCCC
Q 020669 17 TLVPSSRRTRSLQP----TLTKLSITSTAPTP 44 (323)
Q Consensus 17 ~~~~~~~~~~~~~~----~~~~~~~~~~~p~~ 44 (323)
-|||...-.|.+.| -|.||-|+.++|.=
T Consensus 18 RLVP~~kG~R~Fs~iql~RL~kLGI~ktdP~~ 49 (71)
T 2eo2_A 18 RLVPLVNGVREFSEIQLSRLKKLGIHKTDPST 49 (71)
T ss_dssp HHSCCSSSSCCCCHHHHHHHHHHTCCCCSTTT
T ss_pred hhCCCCCCeeecCHHHHHHHHHcCCCCCCccc
Confidence 37888877777765 47899999999863
No 9
>3te8_A Sensor histidine kinase RISS; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.70A {Burkholderia pseudomallei} PDB: 3lr4_A
Probab=3.75 E-value=5.3e+02 Score=20.16 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=17.9
Q ss_pred hhhHHHHHHHH-HHHHHHHHHhHhhhh
Q 020669 294 VMRDVVMMMNI-AAGLMSMAMDARRRY 319 (323)
Q Consensus 294 ~~~~~~~~~~~-~~~~~~~~~~~~~~~ 319 (323)
+..+|..++|+ .+.|..+.-+.|+.+
T Consensus 19 ~A~qva~~v~lt~~al~~~~~~~R~~l 45 (127)
T 3te8_A 19 VALQLVAIVKLTRTALLYSDPDLRRAL 45 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTBCGGGHHHH
T ss_pred HHHHHHHHHhhhhhhHhhCCHHHHHHH
Confidence 67888999998 445666666666543
No 10
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=3.53 E-value=2.3e+02 Score=22.14 Aligned_cols=19 Identities=47% Similarity=0.459 Sum_probs=14.2
Q ss_pred CCcccccccccchhhhhcc
Q 020669 252 GGNLNLNTKAGTAVVRSME 270 (323)
Q Consensus 252 g~~~~~~~~~~~~~~~~~~ 270 (323)
||-..+||.++..|.|+.|
T Consensus 65 GGAy~~~T~~~~t~~r~~~ 83 (83)
T 3j21_i 65 GGAYLPVTPAGKAVRRITE 83 (83)
T ss_dssp CCSSSSSCHHHHHHHHSCC
T ss_pred CCccccCccHhhhhhhccC
Confidence 6777788888887777764
Done!