Query 020669
Match_columns 323
No_of_seqs 56 out of 58
Neff 2.4
Searched_HMMs 13730
Date Mon Mar 25 06:27:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020669.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020669hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cj4a1 a.29.6.1 (A:4-150) Inv 17.9 33 0.0024 24.7 2.5 28 285-312 119-146 (147)
2 d2af4c1 c.77.1.5 (C:2-333) Pho 11.1 56 0.0041 27.8 2.4 55 250-306 261-324 (332)
3 d1x91a_ a.29.6.1 (A:) Pectin m 8.6 75 0.0055 22.5 1.9 32 281-312 115-146 (149)
4 d1r5ja_ c.77.1.5 (A:) Phosphot 6.6 92 0.0067 26.2 1.8 53 251-305 261-322 (329)
5 d1xcoa_ c.77.1.5 (A:) Phosphot 4.8 1.2E+02 0.0086 25.5 1.3 37 258-296 269-305 (324)
6 d2oa4a1 a.4.12.3 (A:1-93) Unch 4.1 2.5E+02 0.018 20.6 2.6 42 279-321 18-62 (93)
7 d1iqca2 a.3.1.5 (A:151-308) Di 3.8 3E+02 0.022 20.6 2.9 27 36-62 131-157 (158)
8 d1vmia_ c.77.1.5 (A:) Ethanola 3.5 1.4E+02 0.01 25.0 0.8 53 252-306 265-326 (329)
9 d1ki1b2 b.55.1.1 (B:1439-1580) 3.4 47 0.0034 23.8 -2.2 37 265-301 12-51 (142)
10 d2ajta2 c.85.1.2 (A:1-328) L-a 3.2 2.3E+02 0.017 24.3 1.8 40 272-311 127-173 (328)
No 1
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}
Probab=17.92 E-value=33 Score=24.67 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=23.4
Q ss_pred cCcCCceehhhhHHHHHHHHHHHHHHHH
Q 020669 285 KGIRSPVVMVMRDVVMMMNIAAGLMSMA 312 (323)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (323)
+++.+|+.-..+.|..|.+||..+..+.
T Consensus 119 ~~~~spl~~~~~~~~~l~~ial~i~~~L 146 (147)
T d2cj4a1 119 KGSKSPFSALNIAVHELSDVGRAIVRNL 146 (147)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 4667998888899999999999887764
No 2
>d2af4c1 c.77.1.5 (C:2-333) Phosphotransacetylase Pta {Methanosarcina thermophila [TaxId: 2210]}
Probab=11.12 E-value=56 Score=27.82 Aligned_cols=55 Identities=20% Similarity=0.400 Sum_probs=38.9
Q ss_pred CCCCcccc----cccccchhhhhcccccccccccccccccCcCCceehhhh-----HHHHHHHHHH
Q 020669 250 GMGGNLNL----NTKAGTAVVRSMENLRGSRVMGGLMTKKGIRSPVVMVMR-----DVVMMMNIAA 306 (323)
Q Consensus 250 g~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 306 (323)
-.-|+-|+ |-.||......+..|-+..+.|-++. |.+.||+++-| |+|.|.-|||
T Consensus 261 ~v~G~AnvLIfPnl~agNi~yK~l~~~~~a~~~Gpil~--G~~~Pv~~~sR~~s~~~i~~~~alaa 324 (332)
T d2af4c1 261 PVAGKANVFIFPDLNCGNIAYKIAQRLAKAEAYGPITQ--GLAKPINDLSRGCSDEDIVGAVAITC 324 (332)
T ss_dssp SSTTSCCEEECSSHHHHHHHHHHHHHTSCCEEEEEEEE--SBSSCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCCCCCCEEEeCChHHhHHHHHHHHHhcCCeEEcchhh--cCCCCEEECCCCCCHHHHHHHHHHHH
Confidence 34555554 45677788888888888888886653 88999999876 5555554444
No 3
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=8.57 E-value=75 Score=22.53 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=24.1
Q ss_pred cccccCcCCceehhhhHHHHHHHHHHHHHHHH
Q 020669 281 LMTKKGIRSPVVMVMRDVVMMMNIAAGLMSMA 312 (323)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (323)
+-..+++.+||+-..++|.-|.+|+..|..+.
T Consensus 115 f~~~~~~~s~l~~~~~~~~~l~~ialai~~~L 146 (149)
T d1x91a_ 115 VKRLRSVDSSVVNNSKTIKNLCGIALVISNML 146 (149)
T ss_dssp HTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33445678898888888888999988877653
No 4
>d1r5ja_ c.77.1.5 (A:) Phosphotransacetylase Pta {Streptococcus pyogenes [TaxId: 1314]}
Probab=6.59 E-value=92 Score=26.24 Aligned_cols=53 Identities=21% Similarity=0.374 Sum_probs=37.7
Q ss_pred CCCcccc----cccccchhhhhcccccccccccccccccCcCCceehhhh-----HHHHHHHHH
Q 020669 251 MGGNLNL----NTKAGTAVVRSMENLRGSRVMGGLMTKKGIRSPVVMVMR-----DVVMMMNIA 305 (323)
Q Consensus 251 ~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 305 (323)
.-|+-|+ |-.+|......+..|-+..+.|-++ -|+..||+++-| |+|-|.-||
T Consensus 261 v~G~AnvLIfPnl~agNi~yK~l~~l~~~~~iGpil--~G~~~Pv~~~sr~~s~~di~~~~aia 322 (329)
T d1r5ja_ 261 VAGQANTFVFPDLQSGNIGYKIAQRLGMFDAIGPIL--QGLNKPVNDLSRGSSAEDIYKLAIIT 322 (329)
T ss_dssp STTCCCEEECSSHHHHHHHHHHHHHTTCCEEEEEEE--ESBSSCEEECCTTCCHHHHHHHHHHH
T ss_pred cCCCCCEEEeCChHHHHHHHHHHHHhcCCeEEcchh--hCCCCCEEECCCCCCHHHHHHHHHHH
Confidence 4566663 5567777888888888888888665 489999999876 555444443
No 5
>d1xcoa_ c.77.1.5 (A:) Phosphotransacetylase Pta {Bacillus subtilis [TaxId: 1423]}
Probab=4.80 E-value=1.2e+02 Score=25.47 Aligned_cols=37 Identities=22% Similarity=0.373 Sum_probs=29.5
Q ss_pred cccccchhhhhcccccccccccccccccCcCCceehhhh
Q 020669 258 NTKAGTAVVRSMENLRGSRVMGGLMTKKGIRSPVVMVMR 296 (323)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (323)
|-.+|......+..|-+..+.|-++ -|...||+++-|
T Consensus 269 ~l~agNi~yK~l~~~~~a~~~Gpil--~G~~~Pv~~~sr 305 (324)
T d1xcoa_ 269 SLEAGNIGYKIAQRLGNFEAVGPIL--QGLNMPVNDLSR 305 (324)
T ss_dssp SHHHHHHHHHHHHHTTTCEEEEEEE--ESBSSCEEECCT
T ss_pred ChHHhHHHHHHHHHhcCCeEEcchh--hcCCCCEEECCC
Confidence 4557778888889998888888665 388899999866
No 6
>d2oa4a1 a.4.12.3 (A:1-93) Uncharacterized protein SPO1678 {Silicibacter pomeroyi [TaxId: 89184]}
Probab=4.13 E-value=2.5e+02 Score=20.61 Aligned_cols=42 Identities=24% Similarity=0.599 Sum_probs=30.9
Q ss_pred cccccccCcCCcee---hhhhHHHHHHHHHHHHHHHHHhHhhhhcc
Q 020669 279 GGLMTKKGIRSPVV---MVMRDVVMMMNIAAGLMSMAMDARRRYGF 321 (323)
Q Consensus 279 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (323)
|..||.+.|..|-. .+-|-+...+.|..||+|.+ +|-+||+.
T Consensus 18 gs~~t~~dLp~~~trRWva~RKaaVV~av~~Gl~S~~-EAcrrY~L 62 (93)
T d2oa4a1 18 GSIMTRADLPPANTRRWVASRKIAVVRGVIYGLITLA-EAKQTYGL 62 (93)
T ss_dssp SCEEETTSSCCSCCSCCCHHHHHHHHHHHHHTTCCHH-HHHHTTCS
T ss_pred CCccccccCCCcccccccHHHHHHHHHHHHcCcCCHH-HHHHHhCC
Confidence 55788888887743 34566667778889999876 67788875
No 7
>d1iqca2 a.3.1.5 (A:151-308) Di-heme cytochrome c peroxidase {Nitrosomonas europaea [TaxId: 915]}
Probab=3.78 E-value=3e+02 Score=20.64 Aligned_cols=27 Identities=26% Similarity=0.469 Sum_probs=17.2
Q ss_pred ecccCCCCCCCCCCCCCCCCCCCCCCC
Q 020669 36 SITSTAPTPDQSLVPVSYPGRPQPQPA 62 (323)
Q Consensus 36 ~~~~~~p~~~s~~ePs~Y~~rpkPrPa 62 (323)
+++..+|.+.--..|.....-|+|+|+
T Consensus 131 sLt~~~~~~~~P~~~~s~~~~p~~~p~ 157 (158)
T d1iqca2 131 TLTGDQPDFKLPILPPSNNDTPRSQPY 157 (158)
T ss_dssp TTCCCCCCCBCCCCCCCCTTSCCCCSC
T ss_pred hcCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 344566666544455555778888886
No 8
>d1vmia_ c.77.1.5 (A:) Ethanolamine utilization protein EutD {Escherichia coli [TaxId: 562]}
Probab=3.52 E-value=1.4e+02 Score=24.98 Aligned_cols=53 Identities=26% Similarity=0.493 Sum_probs=36.8
Q ss_pred CCcccc----cccccchhhhhcccccccccccccccccCcCCceehhhh-----HHHHHHHHHH
Q 020669 252 GGNLNL----NTKAGTAVVRSMENLRGSRVMGGLMTKKGIRSPVVMVMR-----DVVMMMNIAA 306 (323)
Q Consensus 252 g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 306 (323)
-|+-|+ |-.+|......+..|-+..+.|-++ -|+..||+++-| |+|.|.-|||
T Consensus 265 ~G~AnvLI~Pnl~agNi~yK~l~~~~~a~~iGpil--~G~~~Pv~~~sr~~s~~~i~n~~aiaa 326 (329)
T d1vmia_ 265 QGKANVMVFPSLEAGNIGYKIAQRLGGYRAVGPLI--QGLAAPMHDLSRGCSVQEIIELALVAA 326 (329)
T ss_dssp TTCCSEEECSSHHHHHHHHHHHHHHHCEEEEEEEE--ESBSSCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCCCCEEEeCChHHHHHHHHHHHHhcCCeEEchhh--hcCCCCEEECCCCCCHHHHHHHHHHhc
Confidence 345554 5557777788888888888888654 488999999865 5555554443
No 9
>d1ki1b2 b.55.1.1 (B:1439-1580) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.44 E-value=47 Score=23.83 Aligned_cols=37 Identities=24% Similarity=0.386 Sum_probs=21.5
Q ss_pred hhhhcccccccccc---cccccccCcCCceehhhhHHHHH
Q 020669 265 VVRSMENLRGSRVM---GGLMTKKGIRSPVVMVMRDVVMM 301 (323)
Q Consensus 265 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 301 (323)
|..|+.|+-++|.+ |-|+-++.-+.-++.++.|++++
T Consensus 12 ~~~s~~~~~~~R~li~eG~L~k~~~~k~r~~FLFnD~Ll~ 51 (142)
T d1ki1b2 12 VFNSVTNCLGPRKFLHSGKLYKAKNNKELYGFLFNDFLLL 51 (142)
T ss_dssp CSSSBCSSSSBCCEEEECCCBCSSSCCCCEEEEESSEEEE
T ss_pred ccCCcccccCCeEEEEeeEEEEecCCCEEEEEEecCEEEE
Confidence 44667777777754 44444444444456667776554
No 10
>d2ajta2 c.85.1.2 (A:1-328) L-arabinose isomerase AraA {Escherichia coli [TaxId: 562]}
Probab=3.17 E-value=2.3e+02 Score=24.33 Aligned_cols=40 Identities=18% Similarity=0.144 Sum_probs=32.4
Q ss_pred ccccccccccccccCcCCceeh-------hhhHHHHHHHHHHHHHHH
Q 020669 272 LRGSRVMGGLMTKKGIRSPVVM-------VMRDVVMMMNIAAGLMSM 311 (323)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 311 (323)
..|.|-+|-++++.||+.-||. |-+++--.+.+|+++-.+
T Consensus 127 aHg~re~g~i~~Rlgi~~kvV~Gh~~D~~V~~~I~~W~RAA~a~~~l 173 (328)
T d2ajta2 127 AHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDT 173 (328)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEESCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHhcCCCceEEeecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999988886 677777888888776544
Done!