BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020671
(323 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GX84|C3H1_ARATH Zinc finger CCCH domain-containing protein 1 OS=Arabidopsis
thaliana GN=At1g01350 PE=2 SV=2
Length = 343
Score = 478 bits (1231), Expect = e-134, Method: Compositional matrix adjust.
Identities = 236/322 (73%), Positives = 278/322 (86%), Gaps = 7/322 (2%)
Query: 6 SGEAQQAEQVCNFFRKPTKNKNIRKRTIREDE-DEDS-IESSVLQNLKKPTKPDSKLYFS 63
+ + Q++QVC FF+KPTK+KNIRKRTI DE D DS ESS+LQNLKK KPDSKLYFS
Sbjct: 20 AAQETQSQQVCTFFKKPTKSKNIRKRTIDADEEDGDSKSESSILQNLKKVAKPDSKLYFS 79
Query: 64 TGPSKRDTSADSNADSEKPIFQFESSKEIQVQHDSKATATLETETDFLRDSRALREKVLK 123
+GPSK T+ ++ E+ +F ++SSKEIQVQ+DS ATATLETETDF +D+RA+RE+VLK
Sbjct: 80 SGPSKSSTT--TSGAPERSVFHYDSSKEIQVQNDSGATATLETETDFNQDARAIRERVLK 137
Query: 124 RSEEALKG--KASGDEKLYKGIHGYVDHKAGFRREHTVSSEKAGGSHGPLRASAHIRVTA 181
+++EALKG K + DEKLYKGIHGY DHKAGFRRE T+SSEKAGGSHGPLRASAHIRV+A
Sbjct: 138 KADEALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPLRASAHIRVSA 197
Query: 182 RFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKARKRNLALGGGD 241
RFDYQPDICKDYKETGYCGYGDSCKF+HDRGDYK GWQ+EKEWEEAEK RKRN A+ G +
Sbjct: 198 RFDYQPDICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRKRNKAM-GVE 256
Query: 242 SDEEGVGQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCNE 301
+++ + D+DE++LPFACFICR+PFVDPVVTKCKHYFCEHCALKHH+KNKKCFVCN+
Sbjct: 257 DEDDEADKDSDEDENALPFACFICREPFVDPVVTKCKHYFCEHCALKHHTKNKKCFVCNQ 316
Query: 302 PTLGIFNTALEIRKRMAEEGKK 323
PT+GIFN A EI+KRMAEE K
Sbjct: 317 PTMGIFNAAHEIKKRMAEERSK 338
>sp|Q9FNG6|C3H51_ARATH Zinc finger CCCH domain-containing protein 51 OS=Arabidopsis
thaliana GN=At5g06420 PE=2 SV=1
Length = 378
Score = 478 bits (1229), Expect = e-134, Method: Compositional matrix adjust.
Identities = 239/329 (72%), Positives = 280/329 (85%), Gaps = 12/329 (3%)
Query: 1 MAESGSGEA--QQAEQVCNFFRKPTKNKNIRKRTIREDE-DEDS-IESSVLQNLKKPTKP 56
MAE G+ + Q+++QVC FF+KPTK+KNIRKRTI DE D DS ESS+LQNLKK KP
Sbjct: 51 MAEFGNDNSNNQESQQVCTFFKKPTKSKNIRKRTIDADEEDGDSKSESSILQNLKKVAKP 110
Query: 57 DSKLYFSTGPSKRDTSADSNADSEKPIFQFESSKEIQVQHDSKATATLETETDFLRDSRA 116
DS LYFS+GPS R + A E+P+F ++SSKEIQVQ+DS ATATLETETDF +D+RA
Sbjct: 111 DSNLYFSSGPSTRTSGA-----PERPVFHYDSSKEIQVQNDSGATATLETETDFNQDARA 165
Query: 117 LREKVLKRSEEALKG--KASGDEKLYKGIHGYVDHKAGFRREHTVSSEKAGGSHGPLRAS 174
+RE+VLK+++ ALKG K + DEKLYKGIHGY DHKAGFRRE T+SSEKAGGSHGPLRAS
Sbjct: 166 IRERVLKKADHALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPLRAS 225
Query: 175 AHIRVTARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKARKRN 234
AHIRV+ARFDYQPDICKDYKETGYCGYGDSCKF+HDRGDYK GWQ+EKEWEEAEK RKRN
Sbjct: 226 AHIRVSARFDYQPDICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRKRN 285
Query: 235 LALGGGDSDEEGVGQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNK 294
A+ G + D++ + D+DE++LPFACFICR+PF+DPVVTKCKHYFCEHCALKHH+KNK
Sbjct: 286 KAM-GVEDDDDEADKDSDEDENALPFACFICREPFLDPVVTKCKHYFCEHCALKHHTKNK 344
Query: 295 KCFVCNEPTLGIFNTALEIRKRMAEEGKK 323
KCFVCN+PT+GIFN A EI+KRMAEE K
Sbjct: 345 KCFVCNQPTMGIFNAAHEIKKRMAEERSK 373
>sp|Q6K4V3|C3H15_ORYSJ Zinc finger CCCH domain-containing protein 15 OS=Oryza sativa
subsp. japonica GN=Os02g0301000 PE=2 SV=1
Length = 326
Score = 375 bits (964), Expect = e-103, Method: Compositional matrix adjust.
Identities = 210/319 (65%), Positives = 248/319 (77%), Gaps = 20/319 (6%)
Query: 15 VCNFFRKPTKNKNIRKRTIREDEDEDSIESSVLQNLKKPTKPDS--KLYFSTGPSKRDTS 72
VC+F RKP KN R +D+D S + + P S KL+FS S
Sbjct: 18 VCSFVRKPPKNIRKRPTAPAGSDDDDEDGSGAIAAARAKKAPSSTSKLFFS--------S 69
Query: 73 ADSNADSEKPIFQFESSKEIQVQHDSKATATLETETDFLRDSRALREKVLKRSEEALK-- 130
AD +++ + FQ+ESS+ IQ DS+ATATLETET+F RD+RA+RE+ LK++EE+LK
Sbjct: 70 ADGSSEPRR--FQYESSRTIQASTDSRATATLETETEFDRDARAIRERQLKQAEESLKKN 127
Query: 131 ------GKASGDEKLYKGIHGYVDHKAGFRREHTVSSEKAGGSHGPLRASAHIRVTARFD 184
SG ++YKGIHGY D+KAGFRREHTVSSEKAGGSHGPLRASAHIR++ARFD
Sbjct: 128 PSAPASSSGSGSGEVYKGIHGYTDYKAGFRREHTVSSEKAGGSHGPLRASAHIRLSARFD 187
Query: 185 YQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKARKRNLALGGGDSDE 244
YQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQ+EKEWEEAEKARKR +A+GG SD
Sbjct: 188 YQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQIEKEWEEAEKARKRRIAMGGDGSDY 247
Query: 245 EGVGQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCNEPTL 304
E + DDDDE++LPFAC+ICR+PFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCN+PTL
Sbjct: 248 EAGEEDDDDDEEALPFACYICREPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCNKPTL 307
Query: 305 GIFNTALEIRKRMAEEGKK 323
GIFN A EIRK+MA++ K+
Sbjct: 308 GIFNAAQEIRKKMAQDKKQ 326
>sp|Q8IZP6|R113B_HUMAN RING finger protein 113B OS=Homo sapiens GN=RNF113B PE=1 SV=3
Length = 322
Score = 206 bits (524), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 122/328 (37%), Positives = 186/328 (56%), Gaps = 30/328 (9%)
Query: 9 AQQAEQVCNF-FRKPTKN--KNIRKRTIREDEDEDSIES-----SVLQNLKKPTKPDSKL 60
A QA+QVC F F+KP + +RKR + E +S S +V Q + +P
Sbjct: 11 ADQADQVCTFLFKKPGRKGAAGLRKRPACDPEHGESSSSGDEGDTVAQPPRVAPRPRGLH 70
Query: 61 YFSTGPSKRDTSADSNADSEKPIFQFESSKEIQVQHDSKATATLETETDFLRDSRALREK 120
+ ++ +S +++ S + D ATA E +T+ + + K
Sbjct: 71 SWQKAAHGDRRGEEAAPESLDVVYRSTRSAKPVGPEDMGATADFEQDTEKEHHTPTIL-K 129
Query: 121 VLKRSEEALKGKASGDEKLYKGIHGYVDHKAGFRREHTVSSEKAGGSH-GPLRASAHIRV 179
+R +EAL+G+ + +Y+GIH Y+ + ++ ++ + +G + GP+RA H+R
Sbjct: 130 CSQRVQEALRGREH--DHIYRGIHSYLRYLKP--KDTSMGNSSSGMARKGPIRAPGHLRA 185
Query: 180 TARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKARKRNLALGG 239
T R+DYQPDICKDYKETG+CG+GDSCKF+HDR DYK GW++E+E EE +
Sbjct: 186 TVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKLGWEIERELEEG------RYCICE 239
Query: 240 GDSDEEGVGQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVC 299
++ E G +E+ +PF CFICR+ F +PVVTKC+HYFCE CAL+H +C++C
Sbjct: 240 DENHEVG------SEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYIC 293
Query: 300 NEPTLGIFNTALEIRKRM----AEEGKK 323
++PT GIFN A E+ ++ A EGKK
Sbjct: 294 DQPTGGIFNPAKELMAKLQKLQAAEGKK 321
>sp|O15541|R113A_HUMAN RING finger protein 113A OS=Homo sapiens GN=RNF113A PE=1 SV=1
Length = 343
Score = 200 bits (508), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 145/222 (65%), Gaps = 18/222 (8%)
Query: 97 DSKATATLETETDFLRDSRALREKVLKRSEEALKGKASGDEKLYKGIHGYVDHKAGFRRE 156
D ATA E +T+ RD++A+ E+ K EE L+GK D+K+Y+GI+ Y K ++
Sbjct: 113 DMGATAVYELDTEKERDAQAIFERSQKIQEE-LRGKE--DDKIYRGINNY--QKYMKPKD 167
Query: 157 HTVSSEKAGGSH-GPLRASAHIRVTARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYK 215
++ + +G GP+RA H+R T R+DYQPDICKDYKETG+CG+GDSCKF+HDR DYK
Sbjct: 168 TSMGNASSGMVRKGPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYK 227
Query: 216 SGWQMEKEWEEAEKARKRNLALGGGDSDEEGVGQSDDDDEDSLPFACFICRKPFVDPVVT 275
GWQ+E+E +E G ++E DD+E +PF CFICR+ F +PVVT
Sbjct: 228 HGWQIERELDEGRY----------GVYEDENYEVGSDDEE--IPFKCFICRQSFQNPVVT 275
Query: 276 KCKHYFCEHCALKHHSKNKKCFVCNEPTLGIFNTALEIRKRM 317
KC+HYFCE CAL+H +C+VC++ T G+FN A E+ ++
Sbjct: 276 KCRHYFCESCALQHFRTTPRCYVCDQQTNGVFNPAKELIAKL 317
>sp|Q67ER4|R113A_BOVIN RING finger protein 113A OS=Bos taurus GN=RNF113A PE=2 SV=1
Length = 343
Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 145/222 (65%), Gaps = 18/222 (8%)
Query: 97 DSKATATLETETDFLRDSRALREKVLKRSEEALKGKASGDEKLYKGIHGYVDHKAGFRRE 156
D ATA E +T+ RD++A+ E+ K EE L+G+ D+K+Y+GI+ Y K ++
Sbjct: 113 DMGATAVYELDTEKERDAQAIFERSQKIQEE-LRGQE--DDKIYRGINNY--QKFMKPKD 167
Query: 157 HTVSSEKAGGSH-GPLRASAHIRVTARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYK 215
++ + +G GP+RA H+R T R+DYQPDICKDYKETG+CG+GDSCKF+HDR DYK
Sbjct: 168 TSMGNASSGMVRKGPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYK 227
Query: 216 SGWQMEKEWEEAEKARKRNLALGGGDSDEEGVGQSDDDDEDSLPFACFICRKPFVDPVVT 275
GWQ+E+E +E G + + VG DE+ +PF CFICR+ F +PVVT
Sbjct: 228 HGWQIERELDEGR--------YGVYEDENYEVG----SDEEEIPFKCFICRQTFQNPVVT 275
Query: 276 KCKHYFCEHCALKHHSKNKKCFVCNEPTLGIFNTALEIRKRM 317
KC+HYFCE CAL+H +C+VC++ T G+FN A E+ ++
Sbjct: 276 KCRHYFCESCALQHFRTTPRCYVCDQQTNGVFNPAKELIAKL 317
>sp|Q4P400|CWC24_USTMA Pre-mRNA-splicing factor CWC24 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=CWC24 PE=3 SV=1
Length = 355
Score = 192 bits (488), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 107/276 (38%), Positives = 143/276 (51%), Gaps = 32/276 (11%)
Query: 50 LKKPTKPDSKLYFSTGPSKRDTSADSNADSEKPIFQFESSKEIQVQHDSKATATLETETD 109
+KK + + L STG R + D EK E V D A L + +
Sbjct: 68 IKKKRRSANPLVQSTGRVYRKLKLSGSLDGEK---------ENSVDADESGDAGLTSSSI 118
Query: 110 FLRDSRALREKVLKRSEEAL--------KGKASGDEKLYKGIHGYVDHKAGFRREHTVSS 161
+ +RE + S+ L G S + LY+G Y A F R
Sbjct: 119 ASSSLQKMREDATRNSDWDLDTAGTLKETGVTSNSDGLYRGAKSY----ASFTRTRDDGC 174
Query: 162 EKAGGSHGPLRASAHIRVTARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQME 221
S GP+R + +R T+ DYQPD+CKDYKETGYCG+GD+CKF+HDR DY +GWQ++
Sbjct: 175 SSKMRSRGPIRQTTTVRTTSLIDYQPDVCKDYKETGYCGFGDTCKFLHDRSDYLAGWQLD 234
Query: 222 KEWEEAEKARKRNLALGGGDSDEEGVGQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYF 281
+ + R+ L SD E D D ED +PFAC ICRK F DPVVT+C HYF
Sbjct: 235 VLPNSSSRTRENML------SDPE-----DSDTEDDIPFACLICRKAFTDPVVTRCAHYF 283
Query: 282 CEHCALKHHSKNKKCFVCNEPTLGIFNTALEIRKRM 317
C CA+K +KN KCF C + T G+FN+A ++ +RM
Sbjct: 284 CSSCAIKRFAKNSKCFACGQQTGGLFNSAKKVLERM 319
>sp|Q55G16|RN113_DICDI RING finger protein 113 homolog OS=Dictyostelium discoideum
GN=rnf113 PE=4 SV=1
Length = 355
Score = 184 bits (466), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 87/184 (47%), Positives = 124/184 (67%), Gaps = 5/184 (2%)
Query: 127 EALKGKASGDEKLYKGIHGYVDHKAGFRREHTVSSEKAGGSH-GPLRASAHIRVTARFDY 185
E G + D+ +Y+G+ Y + F + + + K GG GP++ S +++ R D+
Sbjct: 155 EGSGGSDNNDDGIYRGMKSY----STFVEKKSDLTYKGGGVKAGPMKTSTTFKLSNRIDH 210
Query: 186 QPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKARKRNLALGGGDSDEE 245
QPD+CKDYK+TG C +GD+CKF+HDR DYKSGWQ++KE+EE +K ++ N G +++ +
Sbjct: 211 QPDVCKDYKQTGQCTFGDACKFLHDRSDYKSGWQIDKEYEEEQKQKRLNNINGIKNNNND 270
Query: 246 GVGQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCNEPTLG 305
DD ++ PFACFIC+K +VDPV TKCKH+FCE CAL H+ KNKKC +C EPTLG
Sbjct: 271 NKNNDDDKEQQQFPFACFICKKQYVDPVQTKCKHFFCEDCALTHNRKNKKCALCGEPTLG 330
Query: 306 IFNT 309
F T
Sbjct: 331 TFIT 334
>sp|O17917|RN113_CAEEL RING finger protein 113 homolog OS=Caenorhabditis elegans
GN=rnf-113 PE=2 SV=2
Length = 384
Score = 182 bits (463), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 121/313 (38%), Positives = 167/313 (53%), Gaps = 38/313 (12%)
Query: 17 NFFRKPTKNKN--IRKRTIREDEDEDSIESSVLQNLKKPTKP--------DSKLYFSTGP 66
+ FRKP K +RK+ DED+DS V+Q ++ T P D+ +
Sbjct: 2 DLFRKPKKRNAPVVRKKESSSDEDQDSEVKDVIQKRRR-TNPMVQSTKQLDASTRRADNS 60
Query: 67 SKRDTSADSNADSEKPIFQFESSKEIQVQ--HDSKATATLETETDFLRDSRALREKVLKR 124
S +D N D F +S + D ATATLE +TD+ D++A E+V ++
Sbjct: 61 SDDSDDSDDNQDIAVATHSFAASGDAGPSGPRDQGATATLEVDTDYSHDAQAQFERVQQQ 120
Query: 125 SEEALK--GKASGDEKLYKGIHGYVDHKAGFRREHTVSSEKAGGSH--GPLRASAHIRVT 180
+E ++ GK LYKG Y +A + T A G + GP+RA +R T
Sbjct: 121 LKEGVEKDGKI-----LYKGSALYGAKEA----KDTAKGNAASGYNRVGPVRAPQFLRQT 171
Query: 181 ARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKARKRNLALGGG 240
R+D+ PDICKDYKETG+C +GDSCKF+HDR DYK GW++++E+E + G
Sbjct: 172 VRWDFAPDICKDYKETGFCTFGDSCKFVHDRSDYKHGWEIDEEYEAGK--------YGAE 223
Query: 241 DSDEEGVGQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCN 300
D + + D D+ P CFIC PFVDP+VTKCKHYFC CALK K+ KC +C
Sbjct: 224 DDANYEIHEGD----DTFPEDCFICGNPFVDPIVTKCKHYFCTGCALKSFQKSSKCPICQ 279
Query: 301 EPTLGIFNTALEI 313
+ T I NTA E+
Sbjct: 280 QNTENIMNTAKEL 292
>sp|P0CQ64|CWC24_CRYNJ Pre-mRNA-splicing factor CWC24 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=CWC24 PE=3 SV=1
Length = 329
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 158/307 (51%), Gaps = 30/307 (9%)
Query: 20 RKPTKNKNIRKRTIREDEDEDSIESSVLQNLKKPTKPDSKLYFSTGPSKRDTSADSNADS 79
R+P +++ R+ D ++ S+ N+ +P + G +R T+A++ +
Sbjct: 17 RRPAQSRQRRRSPSPLDPVAEASASASGSNVVRPERKSLANPLVQGTKRRRTNANNEEEE 76
Query: 80 EKP---IFQFESSKEIQVQHDSKATATLETETDFL-RDSRALREKVLKRSEEALKGKASG 135
+ + +F+ + E + AT + D D + R+K ++ E+ G+
Sbjct: 77 DGVGGGLDEFDYAAEGGLTRKGDELATRANDWDLEDVDGQGQRDKKVRLDED---GEIVT 133
Query: 136 DEKLYKGIHGYVDHKAGFRREHTVSSEKAGGSHGPLRASAHIRVTARFDYQPDICKDYKE 195
D+ LY+G Y+ RE K+G P++A++H+R DYQPD+CKDYKE
Sbjct: 134 DDGLYRGASAYL-PTINKTRETLDKKMKSG----PIKATSHVRTITLMDYQPDVCKDYKE 188
Query: 196 TGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKARKRNLALGGGDSDEEGVGQSDDDDE 255
TG+CGYGDSCKF+HDRGDY +GWQ++K EE + + E
Sbjct: 189 TGFCGYGDSCKFLHDRGDYLAGWQLDKLPEEGVREVEEEDE------------------E 230
Query: 256 DSLPFACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCNEPTLGIFNTALEIRK 315
+ +PFAC ICR+PF PVVTKC HYFC CA K K+ KC+ C PT GIFN A ++
Sbjct: 231 EEVPFACLICRQPFTQPVVTKCGHYFCMGCAAKRFQKSPKCYACGAPTQGIFNIADKVIA 290
Query: 316 RMAEEGK 322
++ K
Sbjct: 291 KIEARNK 297
>sp|P0CQ65|CWC24_CRYNB Pre-mRNA-splicing factor CWC24 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=CWC24 PE=3
SV=1
Length = 329
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 158/307 (51%), Gaps = 30/307 (9%)
Query: 20 RKPTKNKNIRKRTIREDEDEDSIESSVLQNLKKPTKPDSKLYFSTGPSKRDTSADSNADS 79
R+P +++ R+ D ++ S+ N+ +P + G +R T+A++ +
Sbjct: 17 RRPAQSRQRRRSPSPLDPVAEASASASGSNVVRPERKSLANPLVQGTKRRRTNANNEEEE 76
Query: 80 EKP---IFQFESSKEIQVQHDSKATATLETETDFL-RDSRALREKVLKRSEEALKGKASG 135
+ + +F+ + E + AT + D D + R+K ++ E+ G+
Sbjct: 77 DGVGGGLDEFDYAAEGGLTRKGDELATRANDWDLEDVDGQGQRDKKVRLDED---GEIVT 133
Query: 136 DEKLYKGIHGYVDHKAGFRREHTVSSEKAGGSHGPLRASAHIRVTARFDYQPDICKDYKE 195
D+ LY+G Y+ RE K+G P++A++H+R DYQPD+CKDYKE
Sbjct: 134 DDGLYRGASAYL-PTINKTRETLDKKMKSG----PIKATSHVRTITLMDYQPDVCKDYKE 188
Query: 196 TGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKARKRNLALGGGDSDEEGVGQSDDDDE 255
TG+CGYGDSCKF+HDRGDY +GWQ++K EE + + E
Sbjct: 189 TGFCGYGDSCKFLHDRGDYLAGWQLDKLPEEGVREVEEEDE------------------E 230
Query: 256 DSLPFACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCNEPTLGIFNTALEIRK 315
+ +PFAC ICR+PF PVVTKC HYFC CA K K+ KC+ C PT GIFN A ++
Sbjct: 231 EEVPFACLICRQPFTQPVVTKCGHYFCMGCAAKRFQKSPKCYACGAPTQGIFNIADKVIA 290
Query: 316 RMAEEGK 322
++ K
Sbjct: 291 KIEARNK 297
>sp|Q5AVC5|CWC24_EMENI Pre-mRNA-splicing factor cwc24 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cwc24
PE=3 SV=1
Length = 332
Score = 160 bits (406), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 85/206 (41%), Positives = 122/206 (59%), Gaps = 22/206 (10%)
Query: 117 LREKVL---KRSEEALKGKASGDEKLYKGIHGYVDHKAGFRREHTVSSEKAGGSHGPLRA 173
L EK L R+ A G A + YKG Y F +++ + K + GP++A
Sbjct: 100 LNEKNLLGTTRARPAATG-ADAPDGTYKGAANYQS----FIQKNPNAPAK---TFGPIKA 151
Query: 174 SAHIRVTARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKARKR 233
++R DY PD+CKDYK TGYCG+GDSCKF H R DYK GW+++++WE + K +
Sbjct: 152 PTNVRTVTFMDYAPDVCKDYKLTGYCGFGDSCKFSHMREDYKQGWELDRDWEVSTKGKN- 210
Query: 234 NLALGGGDSDEEGVGQSDDDDE------DSLPFACFICRKPFVDPVVTKCKHYFCEHCAL 287
LGG + G GQ+ +D++ +++PFAC IC+KP+ +P+VTKC HYFCE CAL
Sbjct: 211 ---LGGKVVSQRG-GQAGEDEDDEEEQLENIPFACIICKKPYQNPIVTKCGHYFCESCAL 266
Query: 288 KHHSKNKKCFVCNEPTLGIFNTALEI 313
+ + KN C C T G+FN A ++
Sbjct: 267 QRYRKNPSCAACGAGTGGVFNVAKKL 292
>sp|Q9P6R8|CWC24_SCHPO Pre-mRNA-splicing factor cwf24 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cwf24 PE=1 SV=1
Length = 533
Score = 154 bits (389), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 132/234 (56%), Gaps = 26/234 (11%)
Query: 85 QFESS--KEIQVQHDSKATATLET--ETDFLRDSRALREKVLKRSEEALKGKASGDEKLY 140
QFE+S K+I V++ S +AT E+ T + RE +L R L +++ +L+
Sbjct: 85 QFENSALKDINVEYQSNLSATGESVNTTTVSAINEDTREVILGRPSPKLANQSTLPTELF 144
Query: 141 KGIHGY---VDHKAGFRREHTVSSEKAGGSHGPLRAS--AHIRVTARFDYQPDICKDYKE 195
+ + Y + + F ++ V GP+ +S + +R+ DYQPD+CKDYK
Sbjct: 145 QSQNDYSRFLPKRKDFEKKSQV---------GPVLSSNASTVRMNTIIDYQPDVCKDYKL 195
Query: 196 TGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKARKRNLALGGGDSDEEGVGQSDDDDE 255
TGYCGYGD+CKF+H R DYK+GWQ+++EW+ ++ K+ L EEG+ + ++ +
Sbjct: 196 TGYCGYGDTCKFLHMREDYKAGWQLDREWDSVQEKYKKGAKL------EEGMVK--NEKK 247
Query: 256 DSLPFACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCNEPTLGIFNT 309
+ +PF C IC+K + P+ T C H+FCE CA+ + K C C T G+F+
Sbjct: 248 EDIPFVCLICKKDYRSPIATTCGHHFCEQCAITRYRKTPTCIQCGADTKGLFSV 301
>sp|Q4WUA0|CWC24_ASPFU Pre-mRNA-splicing factor cwc24 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cwc24
PE=3 SV=1
Length = 339
Score = 154 bits (388), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 99/150 (66%), Gaps = 5/150 (3%)
Query: 169 GPLRASAHIRVTARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAE 228
GP++A ++R D+ PD+CKD+K+TG+CG+GDSCKF+H R DYK GW++++EWE
Sbjct: 155 GPIKAPTNVRTVTVMDFAPDVCKDWKQTGFCGFGDSCKFLHAREDYKQGWELDREWEIGT 214
Query: 229 KARK---RNLALGGGDSD--EEGVGQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYFCE 283
K ++ R ++ GD+ E+ D++ +S+PFAC IC+ + P+VTKC HYFCE
Sbjct: 215 KGKQLSGRVVSKRSGDAKTAEDDEDDDDEELLESIPFACIICKSSYKSPIVTKCGHYFCE 274
Query: 284 HCALKHHSKNKKCFVCNEPTLGIFNTALEI 313
CAL+ + KN C C T G+FN A ++
Sbjct: 275 SCALQRYRKNPSCAACGAGTGGVFNVAKKL 304
>sp|Q7SDY3|CWC24_NEUCR Pre-mRNA-splicing factor cwc-24 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=cwc-24 PE=3 SV=1
Length = 405
Score = 150 bits (378), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 96/161 (59%), Gaps = 12/161 (7%)
Query: 169 GPLRASAHIRVTARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAE 228
GP++A ++IR D PD+CKDYK+TG+CG+GD+CKF+H R DY GWQ++KEWE
Sbjct: 206 GPIKAPSNIRTITITDMAPDVCKDYKQTGFCGFGDNCKFLHAREDYAHGWQLDKEWENVT 265
Query: 229 KARKRNLALGGGDSDEEGVGQS-----------DDDDEDSLPFACFICRKPFVD-PVVTK 276
K +K +D ++ ++ +++PFAC ICR P+ + PVVT+
Sbjct: 266 KGKKNLQGTVVASADRRNKPKNTAEEEEDADAAEEALLENIPFACIICRGPYSNSPVVTR 325
Query: 277 CKHYFCEHCALKHHSKNKKCFVCNEPTLGIFNTALEIRKRM 317
C HYFCE CALK + K+ C C T G+FN A + K +
Sbjct: 326 CGHYFCEACALKRYRKDPSCAACGSGTNGVFNAAKRLAKLL 366
>sp|Q6CB23|CWC24_YARLI Pre-mRNA-splicing factor CWC24 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=CWC24 PE=3 SV=1
Length = 256
Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/136 (49%), Positives = 85/136 (62%), Gaps = 3/136 (2%)
Query: 171 LRASAHIRVTARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKA 230
L+AS++I+ T DYQPD+CKDYK TG+CGYGDSCKF+H R DYK+GWQ+E+EWE +
Sbjct: 118 LKASSNIKSTTSQDYQPDVCKDYKLTGFCGYGDSCKFLHMREDYKAGWQIEREWEIKNRE 177
Query: 231 RKRNLALGGGDSDEEGVGQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYFCEHCALKHH 290
GG D + D +P C IC+ F PVVT+C HYFCE C L H
Sbjct: 178 DDPPRDAGGVSRDADTATSRAD---SGIPDTCPICQGEFKSPVVTQCCHYFCEKCFLAKH 234
Query: 291 SKNKKCFVCNEPTLGI 306
K + CFVC + T G+
Sbjct: 235 KKKQNCFVCGKNTNGV 250
>sp|P53769|CWC24_YEAST Pre-mRNA-splicing factor CWC24 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=CWC24 PE=1 SV=1
Length = 259
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 87/147 (59%), Gaps = 17/147 (11%)
Query: 171 LRASAHIRVTARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKA 230
+ +IR T D+QPD+CKDYK+TGYCGYGDSCKF+H R D+K+GW++ +EW A+K
Sbjct: 125 INQPTNIRTTVLMDFQPDVCKDYKQTGYCGYGDSCKFLHSRDDFKTGWKLNQEW-NADKE 183
Query: 231 RKRNLALGGGDSDEEGVGQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYFCEHCALKHH 290
+ + L D + +PF C +C++ + PVVT C HYFC C K
Sbjct: 184 DSKAVTL----------------DLEKIPFKCTLCKEDYKSPVVTNCGHYFCGSCFAKDM 227
Query: 291 SKNKKCFVCNEPTLGIFNTALEIRKRM 317
K KCF+C++ T G A +++K +
Sbjct: 228 KKGTKCFICHKETHGSAKVASDLQKML 254
>sp|Q752S4|CWC24_ASHGO Pre-mRNA-splicing factor CWC24 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=CWC24
PE=3 SV=1
Length = 250
Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 86/144 (59%), Gaps = 21/144 (14%)
Query: 175 AHIRVTARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKARKRN 234
+++R DYQPD+CKDY++TG+CGYGDSCKF+H R D+++GW++ +EW+
Sbjct: 92 SNVRTRVVMDYQPDVCKDYRQTGFCGYGDSCKFLHSRDDFRAGWRLNEEWK--------- 142
Query: 235 LALGGGDSDEEGVGQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNK 294
VGQ++ D DS+PF C +CR + PV T+C HYFC C + + +
Sbjct: 143 ------------VGQTEARDLDSIPFRCVLCRGHYRAPVRTRCGHYFCGGCFARRVRETR 190
Query: 295 KCFVCNEPTLGIFNTALEIRKRMA 318
+C VC T G+ +A +R+ +A
Sbjct: 191 QCAVCGADTQGVAQSAARLRELLA 214
>sp|Q6FXX1|CWC24_CANGA Pre-mRNA-splicing factor CWC24 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=CWC24 PE=3 SV=1
Length = 226
Score = 127 bits (320), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 86/148 (58%), Gaps = 20/148 (13%)
Query: 166 GSHGPLRASAHIRVTARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWE 225
S ++ +A++R T D+QPD+CKD+K+TGYCGYGDSCKF+H R D+K+GW + +W+
Sbjct: 89 ASSKKIQQAANLRNTILTDFQPDVCKDFKQTGYCGYGDSCKFLHSRDDFKAGWTLATDWK 148
Query: 226 EAEKARKRNLALGGGDSDEEGVGQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYFCEHC 285
E Q ++ ++++PF C +C++ + PV T C HYFC+ C
Sbjct: 149 IDE--------------------QKEETRKEAVPFKCVLCKESYERPVKTNCGHYFCQKC 188
Query: 286 ALKHHSKNKKCFVCNEPTLGIFNTALEI 313
+ +K CF+C E T GI A ++
Sbjct: 189 FVNRIKIDKSCFICGENTEGIAKMATDL 216
>sp|Q6CSS6|CWC24_KLULA Pre-mRNA-splicing factor CWC24 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=CWC24 PE=3 SV=1
Length = 229
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 84/155 (54%), Gaps = 19/155 (12%)
Query: 163 KAGGSHGPLRASAHIRVTARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEK 222
K G P+ S +++ DYQPDICKD+++TGYCGYGDSCKF+H R D GW++
Sbjct: 91 KVSGFVKPV--SKNMKTVTITDYQPDICKDFQKTGYCGYGDSCKFLHSRDDVAGGWKLNT 148
Query: 223 EWEEAEKARKRNLALGGGDSDEEGVGQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYFC 282
+W+ +E + + + +PF CF+C+K + PVVTKC HYFC
Sbjct: 149 DWKV-----------------DETQEKEVLKELEEIPFRCFLCKKEYTSPVVTKCNHYFC 191
Query: 283 EHCALKHHSKNKKCFVCNEPTLGIFNTALEIRKRM 317
C +K + C +C + T G A ++RK +
Sbjct: 192 SSCFMKQMKVSTNCPICGKETEGAAKMATKLRKLL 226
>sp|Q6BYU0|CWC24_DEBHA Pre-mRNA-splicing factor CWC24 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=CWC24 PE=3 SV=2
Length = 232
Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 23/152 (15%)
Query: 160 SSEKAGG--SHGPLRASA-HIRVTARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKS 216
+++K+ G S GP++ I+ T D+QPD+CKD+ +TGYCGYGD+CKF+H R + K
Sbjct: 85 TTDKSAGEKSVGPIKPPPISIKTTTITDFQPDVCKDFLQTGYCGYGDTCKFLHIRDESKQ 144
Query: 217 GWQMEKEWEEAEKARKRNLALGGGDSDEEGVGQSDDDDEDSLPFACFICRKPFVDPVVTK 276
+EKEWE + +K D ++ +P+ C +C K + PV T+
Sbjct: 145 RKPIEKEWETVTEQQK------------------PDKSKEQVPYRCVLCSKDYTSPVKTE 186
Query: 277 CKHYFCEHCALKHHSKNKK--CFVCNEPTLGI 306
C H FC+ C + + KK CF+C + T G+
Sbjct: 187 CNHLFCQKCFMNRYRNLKKPNCFICGKDTGGV 218
>sp|Q5ACW2|CWC24_CANAL Pre-mRNA-splicing factor CWC24 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=CWC24 PE=3 SV=1
Length = 216
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 84/152 (55%), Gaps = 24/152 (15%)
Query: 158 TVSSEKAGGSHGPLRASAHIRVTARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSG 217
VS + G PL +A+I+ T D+QPD+CKD+++ GYCGYGD+CKF+H R + +
Sbjct: 74 VVSQKSKKGELKPL--AANIKTTIITDFQPDVCKDFQQIGYCGYGDTCKFLHVRDESRQK 131
Query: 218 WQMEKEWEEAEKARKRNLALGGGDSDEEGVGQSDDDDEDSLPFACFICRKPFVDPVVTKC 277
++K+WE +G GQ + +++ +PF C +C+ + P+ T+C
Sbjct: 132 IPIKKDWE-----------IG---------GQKEVKEKEDIPFKCVLCKSDYKSPIKTEC 171
Query: 278 KHYFCEHCALKHHSKNKK--CFVCNEPTLGIF 307
H FC+ C L + KK CF+C++ T G
Sbjct: 172 GHIFCKACFLDRYKAKKKGTCFICHKETNGTM 203
>sp|Q6BLM3|RAD18_DEBHA Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=RAD18 PE=3 SV=2
Length = 491
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 233 RNLALGGGDSDEEGVGQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYFCEHCALKHHSK 292
+NL SD E + + DSL C+IC++ PV+T C H FC HC ++
Sbjct: 8 KNLQNVTDPSDWEPTKLPNLKELDSLQ-RCYICKEFLKAPVITSCNHTFCSHCIREYLIV 66
Query: 293 NKKCFVC 299
N C +C
Sbjct: 67 NSHCPLC 73
>sp|Q75EN0|RAD18_ASHGO Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=RAD18 PE=3 SV=1
Length = 443
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 242 SDEEGVGQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVC 299
SD G + D DSL C IC+ PV+T+C H FC C ++ +K +C +C
Sbjct: 13 SDFAGTTIPELADLDSL-LRCHICKDMLQTPVLTQCGHTFCSLCIREYLNKESRCPLC 69
>sp|Q803C1|RNF8_DANRE E3 ubiquitin-protein ligase RNF8 OS=Danio rerio GN=rnf8 PE=2 SV=1
Length = 485
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 244 EEGVGQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVC 299
EE V Q + E L C IC + F++ V C H FC+HC + ++ KC +C
Sbjct: 376 EEVVTQMTEVLESEL--QCSICSELFIEAVTLNCAHSFCQHCISEWRNRKDKCPMC 429
>sp|Q96LD4|TRI47_HUMAN Tripartite motif-containing protein 47 OS=Homo sapiens GN=TRIM47
PE=1 SV=2
Length = 638
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 15/68 (22%)
Query: 259 PFACFICRKPFVDPVVTKCKHYFCEHC--ALKHH---------SKNKKCFVCNEPTLGIF 307
PF+C IC +P +PV C H FC C AL H +C +C EP F
Sbjct: 6 PFSCPICLEPLREPVTLPCGHNFCLACLGALWPHRGASGAGGPGGAARCPLCQEP----F 61
Query: 308 NTALEIRK 315
L++RK
Sbjct: 62 PDGLQLRK 69
>sp|Q8C0E3|TRI47_MOUSE Tripartite motif-containing protein 47 OS=Mus musculus GN=Trim47
PE=2 SV=2
Length = 641
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 15/68 (22%)
Query: 259 PFACFICRKPFVDPVVTKCKHYFCEHC--ALKHH---------SKNKKCFVCNEPTLGIF 307
PF+C IC +P +PV C H FC C AL H +C +C EP F
Sbjct: 6 PFSCPICLEPLREPVTLPCGHNFCLACLGALWPHRSAGGTGGSGGPARCPLCQEP----F 61
Query: 308 NTALEIRK 315
L++RK
Sbjct: 62 PDGLQLRK 69
>sp|Q9FKA7|ORTH1_ARATH E3 ubiquitin-protein ligase ORTHRUS 1 OS=Arabidopsis thaliana
GN=ORTH1 PE=1 SV=1
Length = 617
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 219 QMEKEWEEAEKARKRNLALGGGDSDEEGVGQSDDDDEDSLPFACFICRKPFVDPVVTKCK 278
Q ++ EAEKA+KR + GG D GV D++++ L C IC + P+ T C
Sbjct: 91 QADETLTEAEKAKKRQKLMSGGGDD--GV---DEEEKKKLEIFCSICIQLPERPITTPCG 145
Query: 279 HYFCEHCALKHHSKNKK--CFVC 299
H FC C K K C +C
Sbjct: 146 HNFCLKCFEKWAVGQGKLTCMIC 168
Score = 35.0 bits (79), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 260 FACFICRKPFVDPVVTKCKHYFCEHC 285
F+C ICR+ PV T C H FC+ C
Sbjct: 493 FSCQICREVLSLPVTTPCAHNFCKAC 518
>sp|Q03605|YNN1_CAEEL Uncharacterized RING finger protein T02C1.1 OS=Caenorhabditis
elegans GN=T02C1.1 PE=4 SV=1
Length = 160
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 254 DEDSLPFACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCNEPT 303
DED F C +C FV+P + +C H +C C H + N+KC +C T
Sbjct: 3 DED---FCCAVCLDFFVEPCIIECGHSYCRFCIESHLNINEKCPLCRAHT 49
>sp|Q17RB8|LONF1_HUMAN LON peptidase N-terminal domain and RING finger protein 1 OS=Homo
sapiens GN=LONRF1 PE=2 SV=2
Length = 773
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 235 LALGGGDSDEEGVGQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNK 294
+L GD EE + SD F C +C + F +PV T C H FC++C +
Sbjct: 460 FSLAYGDIPEELIDVSD--------FECSLCMRLFFEPVTTPCGHSFCKNCLERCLDHAP 511
Query: 295 KCFVCNE 301
C +C E
Sbjct: 512 YCPLCKE 518
>sp|Q6CF78|BRE1_YARLI E3 ubiquitin-protein ligase BRE1 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=BRE1 PE=3 SV=1
Length = 700
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 248 GQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYFCEHCAL-KHHSKNKKCFVCNEP 302
G SD+ DE C +C K + D + C H FC CA + ++ +KC CN+P
Sbjct: 634 GSSDEIDELRSIAMCSLCSKNWKDTALKVCGHVFCHQCAQDRLDARLRKCPNCNKP 689
>sp|Q28GL3|RNFT1_XENTR RING finger and transmembrane domain-containing protein 1
OS=Xenopus tropicalis GN=rnft1 PE=2 SV=1
Length = 416
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 262 CFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVC 299
C IC+ F+ P+V C+H FCE C +K K C +C
Sbjct: 356 CAICQAEFIKPIVLVCQHVFCEECISLWFNKEKTCPLC 393
>sp|Q02084|A33_PLEWA Zinc-binding protein A33 OS=Pleurodeles waltl PE=1 SV=2
Length = 625
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 227 AEKARKRNLALGGGDSDEEGVGQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYFCEHC 285
A ++ KR + G GD + V +DD + L C +CR F +PV+ +C H FC+HC
Sbjct: 130 AARSNKRKIEDGDGDQKKRKVDDEEDDFTEDL--TCPLCRSLFKEPVILECGHNFCKHC 186
>sp|Q6Q0C0|TRAF7_HUMAN E3 ubiquitin-protein ligase TRAF7 OS=Homo sapiens GN=TRAF7 PE=1
SV=1
Length = 670
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 254 DEDSLPFACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCN-EPTLGIFNTAL 311
++ S+ C +C F DPV+T C H FC CAL K++KC V N + T+ + N A+
Sbjct: 123 EQPSVKLCCQLCCSVFKDPVITTCGHTFCRRCAL----KSEKCPVDNVKLTVVVNNIAV 177
>sp|Q922B6|TRAF7_MOUSE E3 ubiquitin-protein ligase TRAF7 OS=Mus musculus GN=Traf7 PE=1
SV=1
Length = 594
Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 254 DEDSLPFACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCNEPTLGIFN 308
++ S+ C +C F DPV+T C H FC CAL K++KC V N + N
Sbjct: 47 EQPSVKLCCQLCCSVFKDPVITTCGHTFCRRCAL----KSEKCPVDNAKLTVVVN 97
>sp|Q4TU14|RHF1A_ARATH E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana GN=RHF1A
PE=1 SV=1
Length = 371
Score = 40.4 bits (93), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 234 NLALGGGDSDEEGVGQSDDDDEDSLPFACFICRKPFV--DP-VVTKCKHYFCEHCALKHH 290
N A+G S + + DDD ++ AC IC +PF DP VT CKH + C ++
Sbjct: 19 NPAIGSSSSSSSALVVASDDDNNT-DDACSICLEPFTLQDPSTVTSCKHEYHLQCIIEWS 77
Query: 291 SKNKKCFVC 299
++K+C +C
Sbjct: 78 QRSKECPIC 86
>sp|Q9FF61|SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A member 3-like 1
OS=Arabidopsis thaliana GN=At5g05130 PE=2 SV=1
Length = 881
Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 253 DDEDSLPFACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKK-CFVC 299
D ED F C IC P + ++T+C H FC C L+ ++K C +C
Sbjct: 629 DGED---FDCPICISPPTNIIITRCAHIFCRACILQTLQRSKPLCPLC 673
>sp|Q3UF64|RNFT2_MOUSE RING finger and transmembrane domain-containing protein 2 OS=Mus
musculus GN=Rnft2 PE=2 SV=2
Length = 445
Score = 40.0 bits (92), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 261 ACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVC 299
C IC+ F DP++ C+H FCE C + + C +C
Sbjct: 384 VCAICQAEFRDPMILLCQHVFCEECLCLWLDRERTCPLC 422
>sp|Q2HJ46|RNF8_BOVIN E3 ubiquitin-protein ligase RNF8 OS=Bos taurus GN=RNF8 PE=2 SV=1
Length = 487
Score = 40.0 bits (92), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 244 EEGVGQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVC 299
EE + +D E+ L C IC + FV+ V C H FC +C + + +C +C
Sbjct: 389 EEVLSHMNDVLENEL--QCIICSEYFVEAVTLNCAHSFCSYCINEWMKRKVECPIC 442
>sp|Q8HXH0|LONF3_MACFA LON peptidase N-terminal domain and RING finger protein 3 OS=Macaca
fascicularis GN=LONRF3 PE=2 SV=1
Length = 718
Score = 40.0 bits (92), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 252 DDDEDSLPFA--------CFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVC 299
D SLP A C +C + F +PV T C H FC C + N KC +C
Sbjct: 408 DKPALSLPLASFDASDLECALCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLC 463
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 260 FACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCNEPTLGIFNTALEI 313
F C C DPV C H FC+ C + + +++C +C G+ +AL +
Sbjct: 156 FKCRKCHGFLSDPVSLSCGHTFCKLCLERGRAADRRCALC-----GVKLSALMV 204
>sp|Q8BVP1|TRIML_MOUSE Probable E3 ubiquitin-protein ligase TRIML1 OS=Mus musculus
GN=Triml1 PE=1 SV=1
Length = 470
Score = 40.0 bits (92), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 27/60 (45%)
Query: 242 SDEEGVGQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCNE 301
S+ E + +D + CFIC F PV T+C H FC C LK ++ C E
Sbjct: 2 SNHEKMSTTDLMENLREELTCFICLDYFSSPVTTECGHSFCLMCLLKSWEEHNTPLSCPE 61
>sp|P33288|RAD18_NEUCR Postreplication repair E3 ubiquitin-protein ligase rad-18
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=uvs-2 PE=3 SV=2
Length = 501
Score = 39.7 bits (91), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 260 FACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVC 299
F C +C+ + P++T C H FC C + S + KC +C
Sbjct: 32 FRCHVCKDFYDSPMLTSCNHTFCSLCIRRCLSVDSKCPLC 71
>sp|Q496Y0|LONF3_HUMAN LON peptidase N-terminal domain and RING finger protein 3 OS=Homo
sapiens GN=LONRF3 PE=1 SV=1
Length = 759
Score = 39.7 bits (91), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 252 DDDEDSLPFA--------CFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVC 299
D SLP A C +C + F +PV T C H FC C + N KC +C
Sbjct: 449 DKPALSLPLASFDASDLECALCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLC 504
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 260 FACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCNEPTLGIFNTALEI 313
F C C DPV C H FC+ C + + +++C +C G+ +AL +
Sbjct: 156 FKCRKCHGFLSDPVSLSCGHTFCKLCLERGRAADRRCALC-----GVKLSALMV 204
>sp|Q6NRG0|RNF8B_XENLA E3 ubiquitin-protein ligase RNF8-B OS=Xenopus laevis GN=rnf8-b PE=2
SV=1
Length = 532
Score = 39.7 bits (91), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 244 EEGVGQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCNEPT 303
EE + +D ++ L C IC + F++ V C H FC +C + ++C +C +
Sbjct: 361 EEVLNHMNDVLDNEL--QCIICSEHFIEAVTLNCAHSFCSYCIKSWRKRKEECPICRQEI 418
Query: 304 LG 305
L
Sbjct: 419 LS 420
>sp|Q4QR06|PCGF1_XENLA Polycomb group RING finger protein 1 OS=Xenopus laevis GN=pcgf1
PE=2 SV=2
Length = 259
Score = 39.7 bits (91), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 260 FACFICRKPFVDPV-VTKCKHYFCEHCALKHHSKNKKCFVCN------EPTLGI 306
C++C F+D +T+C H FC+ C +K+ +K C +CN +P L +
Sbjct: 43 IVCYLCAGYFIDATTITECLHTFCKSCIVKYLQTSKYCPLCNIKIHETQPLLNL 96
>sp|O74747|RAD18_SCHPO Postreplication repair E3 ubiquitin-protein ligase rad18
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rhp18 PE=3 SV=1
Length = 387
Score = 39.7 bits (91), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 260 FACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCNEP 302
C IC + F P++T C H FC C + ++ C C P
Sbjct: 27 LRCLICHEYFRAPLITSCSHTFCSFCIRDYLREHPMCPACRAP 69
>sp|Q3UWA4|TRI40_MOUSE Tripartite motif-containing protein 40 OS=Mus musculus GN=Trim40
PE=2 SV=1
Length = 246
Score = 39.7 bits (91), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 247 VGQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNK-----KCFVCNE 301
+G D D++D C IC P + V T C+H FC C +H K C VC +
Sbjct: 1 MGSLDKDNQD----ICPICLDPLKEAVSTDCRHLFCRMCLTQHMDKASVSGILSCPVCRK 56
Query: 302 P 302
P
Sbjct: 57 P 57
>sp|Q4WZJ6|RAD18_ASPFU Postreplication repair E3 ubiquitin-protein ligase rad18
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=rad18 PE=3 SV=1
Length = 418
Score = 39.7 bits (91), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 260 FACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVC 299
C +C+ F +PV+T C H FC C + S KC C
Sbjct: 28 LRCQVCKDFFDNPVITSCSHTFCSLCIRRCLSTEGKCPAC 67
>sp|Q28H21|PCGF1_XENTR Polycomb group RING finger protein 1 OS=Xenopus tropicalis GN=pcgf1
PE=2 SV=1
Length = 259
Score = 39.7 bits (91), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 260 FACFICRKPFVDPV-VTKCKHYFCEHCALKHHSKNKKCFVCN 300
C++C F+D +T+C H FC+ C +K+ +K C +CN
Sbjct: 43 IVCYLCAGYFIDATTITECLHTFCKSCIVKYLQTSKYCPLCN 84
>sp|Q5R4I2|RNF8_PONAB E3 ubiquitin-protein ligase RNF8 OS=Pongo abelii GN=RNF8 PE=2 SV=1
Length = 486
Score = 39.7 bits (91), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 244 EEGVGQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVC 299
EE + +D E+ L C IC + F++ V C H FC +C + + +C +C
Sbjct: 388 EEVLSHMNDVLENEL--QCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPIC 441
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.131 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,633,836
Number of Sequences: 539616
Number of extensions: 5579305
Number of successful extensions: 18709
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 313
Number of HSP's that attempted gapping in prelim test: 18050
Number of HSP's gapped (non-prelim): 910
length of query: 323
length of database: 191,569,459
effective HSP length: 117
effective length of query: 206
effective length of database: 128,434,387
effective search space: 26457483722
effective search space used: 26457483722
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)