Query 020671
Match_columns 323
No_of_seqs 329 out of 1497
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 04:14:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020671.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020671hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1813 Predicted E3 ubiquitin 100.0 2.9E-67 6.2E-72 493.2 6.8 255 47-323 41-305 (313)
2 COG5152 Uncharacterized conser 100.0 2.2E-42 4.8E-47 310.5 5.0 134 171-321 125-258 (259)
3 KOG0823 Predicted E3 ubiquitin 99.0 2.2E-10 4.8E-15 106.0 4.6 48 255-302 43-93 (230)
4 PLN03208 E3 ubiquitin-protein 99.0 3.3E-10 7.1E-15 102.9 5.2 47 257-303 16-78 (193)
5 PF15227 zf-C3HC4_4: zinc fing 99.0 2.2E-10 4.7E-15 80.0 2.9 38 262-299 1-42 (42)
6 KOG0317 Predicted E3 ubiquitin 98.9 4E-10 8.7E-15 107.2 3.3 46 259-304 239-284 (293)
7 PF13923 zf-C3HC4_2: Zinc fing 98.9 4.1E-10 8.9E-15 76.8 2.2 38 262-299 1-39 (39)
8 smart00504 Ubox Modified RING 98.8 3.6E-09 7.8E-14 78.0 4.6 44 260-303 2-45 (63)
9 PF13920 zf-C3HC4_3: Zinc fing 98.8 1.8E-09 3.9E-14 77.3 2.8 47 260-306 3-50 (50)
10 PHA02929 N1R/p28-like protein; 98.7 7.2E-09 1.6E-13 97.2 3.6 49 259-307 174-230 (238)
11 KOG0320 Predicted E3 ubiquitin 98.7 6.6E-09 1.4E-13 93.1 3.1 46 257-302 129-176 (187)
12 PF13639 zf-RING_2: Ring finge 98.7 3E-09 6.6E-14 74.1 0.5 40 261-300 2-44 (44)
13 PF00097 zf-C3HC4: Zinc finger 98.7 1.1E-08 2.4E-13 69.8 2.4 38 262-299 1-41 (41)
14 TIGR00599 rad18 DNA repair pro 98.7 1.3E-08 2.8E-13 101.7 3.8 47 258-304 25-71 (397)
15 PF14634 zf-RING_5: zinc-RING 98.6 4.8E-08 1E-12 68.4 3.4 41 261-301 1-44 (44)
16 cd00162 RING RING-finger (Real 98.5 7.1E-08 1.5E-12 64.9 3.0 42 261-302 1-44 (45)
17 KOG0287 Postreplication repair 98.5 2.7E-08 5.8E-13 96.8 1.1 45 259-303 23-67 (442)
18 KOG2164 Predicted E3 ubiquitin 98.5 4.4E-08 9.6E-13 99.4 2.6 47 259-305 186-237 (513)
19 COG5432 RAD18 RING-finger-cont 98.5 4.5E-08 9.7E-13 93.7 2.2 44 259-302 25-68 (391)
20 smart00184 RING Ring finger. E 98.5 1.1E-07 2.4E-12 61.7 3.0 38 262-299 1-39 (39)
21 COG5574 PEX10 RING-finger-cont 98.5 5.9E-08 1.3E-12 91.6 2.0 46 259-304 215-262 (271)
22 PHA02926 zinc finger-like prot 98.5 8E-08 1.7E-12 89.1 2.8 47 260-306 171-232 (242)
23 PF04564 U-box: U-box domain; 98.4 3.8E-07 8.3E-12 70.4 4.3 46 259-304 4-50 (73)
24 PF13445 zf-RING_UBOX: RING-ty 98.4 1.5E-07 3.2E-12 66.3 1.7 35 262-297 1-43 (43)
25 KOG1039 Predicted E3 ubiquitin 98.4 2.9E-07 6.4E-12 90.4 4.3 118 189-310 95-227 (344)
26 KOG0978 E3 ubiquitin ligase in 98.3 1.9E-07 4.1E-12 98.4 0.6 46 259-304 643-689 (698)
27 KOG2177 Predicted E3 ubiquitin 98.2 5.2E-07 1.1E-11 80.8 1.8 44 258-301 12-55 (386)
28 PF14835 zf-RING_6: zf-RING of 98.1 1.1E-06 2.4E-11 66.9 0.8 43 260-304 8-51 (65)
29 COG5222 Uncharacterized conser 98.1 4.2E-06 9.2E-11 80.7 4.9 88 206-302 230-319 (427)
30 PF12678 zf-rbx1: RING-H2 zinc 98.0 3.7E-06 7.9E-11 65.2 3.3 40 261-300 21-73 (73)
31 PF00642 zf-CCCH: Zinc finger 98.0 1.1E-06 2.4E-11 55.8 0.2 27 185-211 1-27 (27)
32 PHA03096 p28-like protein; Pro 97.9 3E-06 6.6E-11 81.5 1.0 92 198-302 130-232 (284)
33 smart00356 ZnF_C3H1 zinc finge 97.9 4.9E-06 1.1E-10 51.7 1.6 26 185-211 2-27 (27)
34 KOG4159 Predicted E3 ubiquitin 97.8 1.2E-05 2.6E-10 80.6 4.0 50 256-305 81-130 (398)
35 TIGR00570 cdk7 CDK-activating 97.8 2.2E-05 4.8E-10 76.3 4.0 44 260-303 4-53 (309)
36 KOG4265 Predicted E3 ubiquitin 97.8 1.6E-05 3.5E-10 78.1 3.1 55 255-309 286-341 (349)
37 KOG0824 Predicted E3 ubiquitin 97.7 1.6E-05 3.4E-10 76.7 2.0 59 260-318 8-67 (324)
38 PF11789 zf-Nse: Zinc-finger o 97.7 2.8E-05 6.2E-10 57.8 2.8 43 256-298 8-53 (57)
39 KOG4172 Predicted E3 ubiquitin 97.6 8.9E-06 1.9E-10 60.3 -0.8 48 260-307 8-57 (62)
40 KOG4628 Predicted E3 ubiquitin 97.5 5.1E-05 1.1E-09 74.8 2.8 44 260-303 230-277 (348)
41 KOG0311 Predicted E3 ubiquitin 97.5 1.1E-05 2.3E-10 79.3 -2.7 47 256-302 40-88 (381)
42 KOG2660 Locus-specific chromos 97.5 3.7E-05 8.1E-10 74.8 1.0 48 259-306 15-63 (331)
43 PF12861 zf-Apc11: Anaphase-pr 97.5 8.4E-05 1.8E-09 59.7 2.8 43 261-303 23-81 (85)
44 KOG0802 E3 ubiquitin ligase [P 97.4 4.3E-05 9.3E-10 79.2 0.8 43 259-301 291-338 (543)
45 COG5540 RING-finger-containing 97.3 0.00011 2.3E-09 71.3 2.4 46 259-304 323-372 (374)
46 KOG2879 Predicted E3 ubiquitin 97.3 0.00024 5.1E-09 68.0 3.8 51 256-306 236-289 (298)
47 COG5243 HRD1 HRD ubiquitin lig 97.2 0.00023 5E-09 70.6 2.5 43 260-302 288-343 (491)
48 KOG0297 TNF receptor-associate 96.8 0.00051 1.1E-08 68.8 1.9 44 259-302 21-65 (391)
49 KOG0828 Predicted E3 ubiquitin 96.5 0.0012 2.6E-08 67.6 1.7 46 260-305 572-635 (636)
50 KOG1002 Nucleotide excision re 96.4 0.001 2.2E-08 68.6 0.9 48 255-302 532-584 (791)
51 KOG0825 PHD Zn-finger protein 96.4 0.0006 1.3E-08 72.9 -1.3 48 259-306 123-173 (1134)
52 PF04641 Rtf2: Rtf2 RING-finge 96.3 0.0057 1.2E-07 57.9 5.3 49 254-303 108-160 (260)
53 KOG4185 Predicted E3 ubiquitin 96.1 0.0054 1.2E-07 58.4 3.5 46 260-305 4-56 (296)
54 KOG4692 Predicted E3 ubiquitin 96.0 0.0034 7.4E-08 62.2 2.0 46 260-305 423-468 (489)
55 COG5236 Uncharacterized conser 95.8 0.0053 1.2E-07 60.7 2.3 47 261-307 63-111 (493)
56 KOG3039 Uncharacterized conser 95.8 0.0077 1.7E-07 57.2 3.2 45 258-302 220-268 (303)
57 KOG0804 Cytoplasmic Zn-finger 95.6 0.01 2.2E-07 60.3 3.5 100 174-302 113-220 (493)
58 KOG1571 Predicted E3 ubiquitin 95.6 0.0054 1.2E-07 60.7 1.4 51 253-306 299-349 (355)
59 KOG1785 Tyrosine kinase negati 95.4 0.0063 1.4E-07 61.2 1.3 48 261-308 371-420 (563)
60 smart00744 RINGv The RING-vari 95.3 0.015 3.2E-07 41.9 2.7 39 262-300 2-49 (49)
61 KOG4367 Predicted Zn-finger pr 95.3 0.0097 2.1E-07 60.5 2.3 33 259-291 4-36 (699)
62 KOG4739 Uncharacterized protei 95.3 0.0066 1.4E-07 57.1 0.9 42 261-304 5-48 (233)
63 KOG1814 Predicted E3 ubiquitin 95.2 0.014 3.1E-07 58.7 2.9 56 258-313 183-249 (445)
64 KOG1677 CCCH-type Zn-finger pr 95.0 0.011 2.4E-07 57.1 1.7 35 178-212 168-202 (332)
65 COG5194 APC11 Component of SCF 94.9 0.019 4.1E-07 45.8 2.3 28 276-303 53-80 (88)
66 KOG1645 RING-finger-containing 94.8 0.014 3E-07 58.8 1.8 42 260-301 5-53 (463)
67 KOG1001 Helicase-like transcri 94.8 0.015 3.1E-07 62.4 1.9 42 260-302 455-498 (674)
68 PF14447 Prok-RING_4: Prokaryo 94.7 0.013 2.9E-07 43.4 1.0 42 261-304 9-50 (55)
69 KOG0826 Predicted E3 ubiquitin 94.7 0.022 4.8E-07 55.9 2.7 47 257-303 298-345 (357)
70 KOG1734 Predicted RING-contain 94.5 0.012 2.7E-07 56.4 0.7 42 261-302 226-279 (328)
71 KOG0827 Predicted E3 ubiquitin 94.5 0.018 3.8E-07 57.8 1.5 41 260-300 5-52 (465)
72 KOG3970 Predicted E3 ubiquitin 94.2 0.045 9.8E-07 51.5 3.6 57 261-317 52-118 (299)
73 KOG2932 E3 ubiquitin ligase in 94.0 0.024 5.2E-07 55.4 1.4 40 261-302 92-132 (389)
74 KOG4275 Predicted E3 ubiquitin 93.9 0.013 2.8E-07 56.9 -0.7 40 259-302 300-340 (350)
75 KOG1493 Anaphase-promoting com 93.7 0.018 3.9E-07 45.6 -0.1 43 261-303 22-80 (84)
76 KOG3002 Zn finger protein [Gen 92.5 0.12 2.7E-06 50.3 3.7 54 256-312 45-99 (299)
77 PF14608 zf-CCCH_2: Zinc finge 92.4 0.067 1.4E-06 31.4 1.0 18 189-209 1-18 (19)
78 KOG2817 Predicted E3 ubiquitin 92.2 0.078 1.7E-06 53.3 1.9 44 259-302 334-383 (394)
79 PF11793 FANCL_C: FANCL C-term 92.0 0.032 6.9E-07 43.0 -0.8 45 260-304 3-66 (70)
80 KOG3800 Predicted E3 ubiquitin 92.0 0.11 2.3E-06 50.4 2.6 42 261-302 2-49 (300)
81 KOG4445 Uncharacterized conser 91.5 0.034 7.4E-07 54.2 -1.4 45 260-304 116-186 (368)
82 COG5219 Uncharacterized conser 91.4 0.07 1.5E-06 58.8 0.6 44 261-304 1471-1523(1525)
83 PF03854 zf-P11: P-11 zinc fin 91.1 0.097 2.1E-06 38.0 0.9 42 260-303 3-45 (50)
84 KOG3113 Uncharacterized conser 90.4 0.34 7.4E-06 46.4 4.2 49 252-302 104-156 (293)
85 KOG1039 Predicted E3 ubiquitin 90.4 0.1 2.3E-06 51.8 0.8 25 188-213 9-33 (344)
86 KOG1100 Predicted E3 ubiquitin 89.9 0.15 3.2E-06 47.3 1.3 38 261-302 160-198 (207)
87 KOG3039 Uncharacterized conser 89.5 0.19 4.1E-06 48.0 1.7 30 261-290 45-74 (303)
88 KOG0298 DEAD box-containing he 89.3 0.13 2.9E-06 58.1 0.6 45 257-301 1151-1196(1394)
89 KOG2930 SCF ubiquitin ligase, 89.2 0.19 4.2E-06 42.0 1.4 27 276-302 80-106 (114)
90 KOG2185 Predicted RNA-processi 89.0 0.16 3.5E-06 51.4 0.8 23 188-211 141-163 (486)
91 PF14570 zf-RING_4: RING/Ubox 88.7 0.37 7.9E-06 34.9 2.3 41 262-302 1-46 (48)
92 KOG4362 Transcriptional regula 88.6 0.12 2.6E-06 55.3 -0.3 43 259-301 21-66 (684)
93 PF02891 zf-MIZ: MIZ/SP-RING z 88.4 0.31 6.8E-06 35.2 1.9 44 259-302 2-50 (50)
94 PF07800 DUF1644: Protein of u 88.4 0.55 1.2E-05 42.0 3.7 57 260-317 3-103 (162)
95 KOG1940 Zn-finger protein [Gen 88.2 0.42 9.1E-06 46.2 3.1 46 256-301 155-204 (276)
96 KOG2114 Vacuolar assembly/sort 88.0 0.38 8.2E-06 52.6 2.9 46 261-309 842-888 (933)
97 COG5175 MOT2 Transcriptional r 88.0 0.43 9.3E-06 47.5 3.1 52 262-313 17-78 (480)
98 KOG1941 Acetylcholine receptor 87.6 0.15 3.2E-06 51.5 -0.4 46 256-301 362-413 (518)
99 COG5220 TFB3 Cdk activating ki 87.1 0.18 3.9E-06 48.0 -0.1 43 259-301 10-61 (314)
100 PF03194 LUC7: LUC7 N_terminus 85.7 0.26 5.6E-06 46.9 0.1 41 168-210 12-61 (254)
101 PF05290 Baculo_IE-1: Baculovi 85.0 0.61 1.3E-05 40.7 2.1 47 258-304 79-132 (140)
102 KOG3161 Predicted E3 ubiquitin 84.3 0.36 7.8E-06 51.4 0.5 39 260-301 12-54 (861)
103 COG5109 Uncharacterized conser 84.2 0.55 1.2E-05 46.3 1.7 41 260-300 337-383 (396)
104 PF10367 Vps39_2: Vacuolar sor 83.3 0.46 1E-05 37.9 0.6 28 260-287 79-108 (109)
105 PF10235 Cript: Microtubule-as 82.5 0.8 1.7E-05 37.4 1.7 35 261-304 46-80 (90)
106 KOG2068 MOT2 transcription fac 81.6 3.8 8.2E-05 40.6 6.3 48 257-304 247-298 (327)
107 KOG3579 Predicted E3 ubiquitin 81.0 0.67 1.5E-05 45.1 0.9 53 255-307 264-331 (352)
108 KOG1677 CCCH-type Zn-finger pr 80.9 0.65 1.4E-05 44.9 0.8 28 185-212 130-158 (332)
109 PF10497 zf-4CXXC_R1: Zinc-fin 79.5 2.1 4.5E-05 35.6 3.3 42 260-301 8-69 (105)
110 PF08746 zf-RING-like: RING-li 78.2 2.7 5.8E-05 29.4 3.0 38 262-299 1-43 (43)
111 KOG1812 Predicted E3 ubiquitin 76.1 2.3 4.9E-05 42.9 3.0 43 257-299 144-196 (384)
112 PHA02825 LAP/PHD finger-like p 71.1 4.3 9.4E-05 36.4 3.2 44 259-303 8-58 (162)
113 KOG2113 Predicted RNA binding 70.8 3.1 6.7E-05 41.2 2.4 47 258-306 342-389 (394)
114 KOG2034 Vacuolar sorting prote 70.6 1.9 4.2E-05 47.5 1.1 31 261-291 819-851 (911)
115 KOG1815 Predicted E3 ubiquitin 70.3 2.6 5.7E-05 42.9 1.9 35 257-291 68-103 (444)
116 KOG0825 PHD Zn-finger protein 69.9 3.6 7.9E-05 45.1 2.9 42 261-302 98-152 (1134)
117 PF05883 Baculo_RING: Baculovi 69.8 1.9 4.2E-05 37.6 0.7 33 259-291 26-67 (134)
118 PF05605 zf-Di19: Drought indu 69.5 5.1 0.00011 28.9 2.8 37 259-302 2-40 (54)
119 KOG1763 Uncharacterized conser 68.0 1.6 3.5E-05 42.7 -0.2 30 182-212 87-116 (343)
120 KOG2979 Protein involved in DN 66.8 3 6.5E-05 40.0 1.4 65 256-320 173-245 (262)
121 KOG2333 Uncharacterized conser 64.2 2.3 4.9E-05 44.4 0.1 15 194-208 121-135 (614)
122 PF04216 FdhE: Protein involve 63.7 1.9 4.1E-05 41.4 -0.6 49 257-305 170-223 (290)
123 KOG0796 Spliceosome subunit [R 63.4 2.3 5E-05 41.9 -0.0 41 168-210 13-62 (319)
124 TIGR01562 FdhE formate dehydro 62.6 2.4 5.1E-05 41.6 -0.1 44 259-302 184-233 (305)
125 KOG1952 Transcription factor N 62.5 3.8 8.1E-05 45.2 1.3 45 257-301 189-244 (950)
126 PF07975 C1_4: TFIIH C1-like d 61.8 8.7 0.00019 28.2 2.7 25 276-300 26-50 (51)
127 KOG2494 C3H1-type Zn-finger pr 61.5 2.2 4.7E-05 42.2 -0.6 32 175-209 27-59 (331)
128 PRK04023 DNA polymerase II lar 61.0 5.9 0.00013 44.6 2.5 50 257-308 624-678 (1121)
129 KOG1428 Inhibitor of type V ad 58.9 6.3 0.00014 46.2 2.3 45 261-305 3488-3545(3738)
130 KOG1812 Predicted E3 ubiquitin 57.5 5.1 0.00011 40.4 1.2 40 260-299 307-351 (384)
131 PHA02862 5L protein; Provision 56.0 9.2 0.0002 34.0 2.4 42 261-303 4-52 (156)
132 PRK03564 formate dehydrogenase 55.9 4.3 9.3E-05 40.0 0.4 44 259-302 187-235 (309)
133 PRK11595 DNA utilization prote 55.7 12 0.00026 34.6 3.3 39 259-302 5-43 (227)
134 KOG1492 C3H1-type Zn-finger pr 54.8 5.3 0.00012 37.9 0.8 23 190-212 209-231 (377)
135 PF12906 RINGv: RING-variant d 53.6 6.1 0.00013 28.0 0.8 38 262-299 1-47 (47)
136 PF10272 Tmpp129: Putative tra 53.3 8.5 0.00019 38.7 2.0 26 278-303 312-350 (358)
137 KOG1040 Polyadenylation factor 53.2 4.6 0.0001 40.0 0.1 42 167-211 59-100 (325)
138 KOG3476 Microtubule-associated 47.0 2.5 5.4E-05 34.5 -2.3 36 261-305 56-91 (100)
139 PF07191 zinc-ribbons_6: zinc- 46.5 4.4 9.4E-05 31.7 -1.0 39 260-303 2-40 (70)
140 cd00065 FYVE FYVE domain; Zinc 42.7 14 0.00031 26.2 1.3 31 261-291 4-38 (57)
141 PRK06266 transcription initiat 42.4 10 0.00023 34.2 0.6 38 256-308 114-151 (178)
142 KOG2462 C2H2-type Zn-finger pr 40.4 27 0.00058 34.0 3.1 17 257-273 185-201 (279)
143 KOG3777 Uncharacterized conser 38.9 20 0.00042 37.1 2.0 46 162-210 146-191 (443)
144 TIGR00373 conserved hypothetic 38.4 13 0.00029 32.8 0.6 38 256-308 106-143 (158)
145 PF14569 zf-UDP: Zinc-binding 36.7 26 0.00056 28.0 2.0 42 261-302 11-60 (80)
146 COG5063 CTH1 CCCH-type Zn-fing 36.5 18 0.00039 35.8 1.3 28 185-212 272-299 (351)
147 cd00350 rubredoxin_like Rubred 35.7 25 0.00053 23.0 1.5 11 292-302 16-26 (33)
148 smart00064 FYVE Protein presen 35.7 28 0.00061 25.7 2.0 32 260-291 11-46 (68)
149 KOG3899 Uncharacterized conser 35.5 19 0.0004 35.6 1.2 26 277-302 325-363 (381)
150 TIGR00622 ssl1 transcription f 35.5 32 0.00069 29.2 2.4 40 261-300 57-110 (112)
151 PF06906 DUF1272: Protein of u 35.5 32 0.0007 25.8 2.2 40 261-302 7-50 (57)
152 PF10650 zf-C3H1: Putative zin 34.9 22 0.00047 22.1 1.0 21 189-211 2-23 (23)
153 PRK14714 DNA polymerase II lar 34.1 20 0.00044 41.4 1.4 49 259-307 667-723 (1337)
154 KOG2202 U2 snRNP splicing fact 33.1 15 0.00033 35.3 0.2 36 190-225 18-53 (260)
155 KOG3268 Predicted E3 ubiquitin 32.9 27 0.0006 32.2 1.8 44 260-303 166-227 (234)
156 PF13240 zinc_ribbon_2: zinc-r 32.8 11 0.00024 23.0 -0.6 12 291-302 11-22 (23)
157 PF04710 Pellino: Pellino; In 32.4 15 0.00032 37.5 0.0 45 260-304 278-339 (416)
158 COG3813 Uncharacterized protei 31.0 31 0.00067 27.4 1.6 23 278-302 28-50 (84)
159 KOG1814 Predicted E3 ubiquitin 30.9 26 0.00055 36.0 1.4 36 256-291 365-406 (445)
160 PF04710 Pellino: Pellino; In 30.5 17 0.00036 37.1 0.0 48 259-306 328-403 (416)
161 KOG2135 Proteins containing th 29.4 16 0.00036 38.0 -0.3 30 184-213 209-238 (526)
162 KOG1595 CCCH-type Zn-finger pr 28.7 32 0.00069 36.3 1.6 34 178-212 227-260 (528)
163 PF00412 LIM: LIM domain; Int 28.2 52 0.0011 23.0 2.3 31 259-289 26-57 (58)
164 PF03833 PolC_DP2: DNA polymer 28.2 19 0.00042 40.0 0.0 59 257-317 653-716 (900)
165 PF10146 zf-C4H2: Zinc finger- 28.1 36 0.00078 32.1 1.8 25 280-304 195-219 (230)
166 KOG2169 Zn-finger transcriptio 27.2 40 0.00088 36.3 2.2 48 256-304 303-356 (636)
167 KOG2231 Predicted E3 ubiquitin 26.9 42 0.0009 36.5 2.2 43 261-303 2-51 (669)
168 KOG4718 Non-SMC (structural ma 26.7 32 0.00068 32.5 1.1 41 261-301 183-224 (235)
169 smart00647 IBR In Between Ring 26.6 16 0.00035 26.1 -0.7 16 276-291 45-60 (64)
170 COG0068 HypF Hydrogenase matur 26.6 33 0.00071 37.6 1.3 42 261-302 103-182 (750)
171 PF07282 OrfB_Zn_ribbon: Putat 26.1 33 0.00072 25.5 0.9 41 259-315 28-68 (69)
172 KOG2807 RNA polymerase II tran 25.8 45 0.00098 33.4 2.0 40 261-300 332-374 (378)
173 KOG3799 Rab3 effector RIM1 and 25.8 27 0.00058 30.9 0.4 25 260-288 66-90 (169)
174 PF14353 CpXC: CpXC protein 25.8 41 0.0009 28.1 1.6 43 260-302 2-47 (128)
175 PF10571 UPF0547: Uncharacteri 25.5 20 0.00042 22.7 -0.3 8 262-269 3-10 (26)
176 KOG1040 Polyadenylation factor 24.4 36 0.00077 33.9 1.1 24 189-212 107-130 (325)
177 KOG1813 Predicted E3 ubiquitin 23.8 44 0.00095 33.0 1.5 53 263-318 75-127 (313)
178 KOG1492 C3H1-type Zn-finger pr 23.4 33 0.00073 32.7 0.6 31 182-212 281-313 (377)
179 smart00154 ZnF_AN1 AN1-like Zi 23.1 55 0.0012 22.4 1.5 23 262-284 1-25 (39)
180 PF01363 FYVE: FYVE zinc finge 22.4 20 0.00043 26.6 -0.9 30 261-290 11-44 (69)
181 PF09723 Zn-ribbon_8: Zinc rib 22.4 22 0.00047 24.5 -0.6 25 276-301 10-34 (42)
182 KOG2333 Uncharacterized conser 22.3 41 0.00088 35.5 1.0 25 186-210 75-101 (614)
183 KOG1595 CCCH-type Zn-finger pr 22.2 41 0.00089 35.5 1.1 31 180-210 68-101 (528)
184 KOG4451 Uncharacterized conser 22.0 51 0.0011 31.6 1.5 27 279-305 249-275 (286)
185 KOG4185 Predicted E3 ubiquitin 21.8 15 0.00031 35.0 -2.2 43 260-302 208-265 (296)
186 PHA03099 epidermal growth fact 21.7 46 0.001 29.1 1.1 28 187-216 40-69 (139)
187 KOG3842 Adaptor protein Pellin 21.1 66 0.0014 32.2 2.2 45 261-305 343-415 (429)
188 COG3058 FdhE Uncharacterized p 20.7 46 0.001 32.7 1.0 42 261-302 187-234 (308)
189 PF13248 zf-ribbon_3: zinc-rib 20.5 27 0.00058 21.7 -0.5 10 292-301 15-24 (26)
190 COG4647 AcxC Acetone carboxyla 20.4 49 0.0011 29.1 1.0 22 263-284 61-82 (165)
No 1
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-67 Score=493.23 Aligned_cols=255 Identities=45% Similarity=0.793 Sum_probs=215.8
Q ss_pred eeccCCCCCCCCCceeecCCCccC-----CC---CCCCCCCCCceeeeeccccccc--cccCccccccccccchhhhHHH
Q 020671 47 LQNLKKPTKPDSKLYFSTGPSKRD-----TS---ADSNADSEKPIFQFESSKEIQV--QHDSKATATLETETDFLRDSRA 116 (323)
Q Consensus 47 ~~~~~~~~~~~~~~~~~t~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~at~~~e~~t~~~~d~~a 116 (323)
+++..+..+..|||+|++..+-.. .. +..+.+.+.+.|.|.|.+++.+ +.|+|||+++|++|+..+||||
T Consensus 41 s~r~ek~~k~~~p~~q~~k~~~k~~~~~~~~s~~s~~~~~~ed~vv~y~s~~~~~~~g~~dsgat~t~e~~te~~~Daqa 120 (313)
T KOG1813|consen 41 SSRLEKLEKKIKPETQRKKETDKVLTGEEDDSALSICQNPFEDPVVTYCSCDKCALKGHTDSGATATLEEPTEGLRDAQA 120 (313)
T ss_pred hhhhhhhhhhcchHhhhhhhhcccccccccccccccccCcccccceeeccccccccCCccccCceeEeecCcccchhHHH
Confidence 445555556789999997443211 11 1222335678999999888875 4599999999999999999999
Q ss_pred HHHHHHhhhHHHhcCCCCCCCccccccccccccccccccccccccCCCCCCCCCcccCceeecceeeccCCCCccccccc
Q 020671 117 LREKVLKRSEEALKGKASGDEKLYKGIHGYVDHKAGFRREHTVSSEKAGGSHGPLRASAHIRVTARFDYQPDICKDYKET 196 (323)
Q Consensus 117 ~~e~~~~~~~~~~~~~~~~~d~~yrg~~~y~~~~~~~~~~~~~~~~~~~~~~gP~ra~~nir~t~~~DyqPDiCKdYkeT 196 (323)
|+|++++...+.+.|+ .++++|+|+|+|++|.+ ..++..+|...|.+=|||||+|||++++|||||||||||++|
T Consensus 121 ~~er~~k~~~e~~~~k--~~~~lykg~~~ya~~~k---~~~~~~~n~s~g~~rpira~~~~r~~~~~d~qpDicKdykeT 195 (313)
T KOG1813|consen 121 IIERRIKEEREKLRGK--KDTKLYKGINTYADDAK---AQKVVKMNESIGTVRPIRAAMHTRAGERIDYQPDICKDYKET 195 (313)
T ss_pred HhhhhHHHHHHhhcch--hHHHHHHHHHHHHhhhh---hhhhHhhhcccccccccchhhhhcccceeecCchhhhhhHhh
Confidence 9999999555568886 48999999999999987 455555666666444999999999999999999999999999
Q ss_pred cccCCCCccceeecccccccccccchhHHHHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCcEEcc
Q 020671 197 GYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKARKRNLALGGGDSDEEGVGQSDDDDEDSLPFACFICRKPFVDPVVTK 276 (323)
Q Consensus 197 G~CgfGDsCkFlHdR~dyk~GwqlerEwee~qk~kk~rl~~g~~~~eed~~~~e~~ddee~~p~~C~IC~e~~~~PVvt~ 276 (323)
|||||||||+|||+|+|||+||||+.||++.+. .+.....+.+.+||.|.||++.|.+||+|.
T Consensus 196 gycg~gdSckFlh~r~DyK~GWqi~~e~d~~ke-----------------~~~~~~~D~~~~Pf~c~icr~~f~~pVvt~ 258 (313)
T KOG1813|consen 196 GYCGYGDSCKFLHDRSDYKAGWQIEFEWDSAKE-----------------KKRVKIEDIELLPFKCFICRKYFYRPVVTK 258 (313)
T ss_pred Ccccccchhhhhhhhhhccccceeehhhhcccc-----------------ccceecCCcccCCccccccccccccchhhc
Confidence 999999999999999999999999999998752 223344567889999999999999999999
Q ss_pred CCCcccHHHHHHhccCCCCCCCCCCCCCCchhhHHHHHHHHHHhcCC
Q 020671 277 CKHYFCEHCALKHHSKNKKCFVCNEPTLGIFNTALEIRKRMAEEGKK 323 (323)
Q Consensus 277 CGH~FC~~Ci~~~~~~s~~CP~Cr~~t~gvfn~Ak~L~~kLk~~kq~ 323 (323)
|+|+||..|++..++....|++|.++++|+||++++|+.+|+.++++
T Consensus 259 c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~~~~akeL~~~L~~kks~ 305 (313)
T KOG1813|consen 259 CGHYFCEVCALKPYQKGEKCYVCSQQTHGSFNVAKELLVSLKLKKSD 305 (313)
T ss_pred CCceeehhhhccccccCCcceecccccccccchHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999987753
No 2
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=100.00 E-value=2.2e-42 Score=310.49 Aligned_cols=134 Identities=42% Similarity=0.929 Sum_probs=119.9
Q ss_pred cccCceeecceeeccCCCCccccccccccCCCCccceeecccccccccccchhHHHHHHHHHhhhhcCCCCCCCCCCCCC
Q 020671 171 LRASAHIRVTARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKARKRNLALGGGDSDEEGVGQS 250 (323)
Q Consensus 171 ~ra~~nir~t~~~DyqPDiCKdYkeTG~CgfGDsCkFlHdR~dyk~GwqlerEwee~qk~kk~rl~~g~~~~eed~~~~e 250 (323)
|-.|++||.++.|||||||||||++||||||||+|||||+|+||+.||+|++||+..-.. .-.
T Consensus 125 ~~~Pt~~r~~~viD~qpdVCKdyk~TGYCGYGDsCKflH~R~D~KtGWkLn~EWnA~~Ee-----------------~~v 187 (259)
T COG5152 125 INQPTMFRDGEVIDTQPDVCKDYKETGYCGYGDSCKFLHDRSDFKTGWKLNQEWNAEYEE-----------------APV 187 (259)
T ss_pred ccCCceeeccceeecCcccccchhhcccccCCchhhhhhhhhhhhcccccchhhcchhhh-----------------ccc
Confidence 344589999999999999999999999999999999999999999999999999943210 111
Q ss_pred CCCCCCCCCccccccccCCCCcEEccCCCcccHHHHHHhccCCCCCCCCCCCCCCchhhHHHHHHHHHHhc
Q 020671 251 DDDDEDSLPFACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCNEPTLGIFNTALEIRKRMAEEG 321 (323)
Q Consensus 251 ~~ddee~~p~~C~IC~e~~~~PVvt~CGH~FC~~Ci~~~~~~s~~CP~Cr~~t~gvfn~Ak~L~~kLk~~k 321 (323)
...+-+.+||.|.||.+.|..||+|.|||+||..|+.+.+++...|.+|++.+.|.|.++++|...|+.++
T Consensus 188 ~~~~~e~IPF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G~f~V~~d~~kmL~~RK 258 (259)
T COG5152 188 ISGPGEKIPFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATYGRFWVVSDLQKMLNKRK 258 (259)
T ss_pred ccCCCCCCceeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchhhccceeHHhhHHHHHhhcc
Confidence 23345789999999999999999999999999999999999999999999999999999999999988664
No 3
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=2.2e-10 Score=106.03 Aligned_cols=48 Identities=40% Similarity=0.744 Sum_probs=43.4
Q ss_pred CCCCCccccccccCCCCcEEccCCCcccHHHHHHhcc---CCCCCCCCCCC
Q 020671 255 EDSLPFACFICRKPFVDPVVTKCKHYFCEHCALKHHS---KNKKCFVCNEP 302 (323)
Q Consensus 255 ee~~p~~C~IC~e~~~~PVvt~CGH~FC~~Ci~~~~~---~s~~CP~Cr~~ 302 (323)
-+..-|.|.||++..++||+|.|||.|||.||.+|+. ....||+|+..
T Consensus 43 ~~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~ 93 (230)
T KOG0823|consen 43 RDGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAE 93 (230)
T ss_pred CCCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccc
Confidence 3567799999999999999999999999999999997 56788999874
No 4
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.01 E-value=3.3e-10 Score=102.88 Aligned_cols=47 Identities=40% Similarity=0.751 Sum_probs=41.1
Q ss_pred CCCccccccccCCCCcEEccCCCcccHHHHHHhcc----------------CCCCCCCCCCCC
Q 020671 257 SLPFACFICRKPFVDPVVTKCKHYFCEHCALKHHS----------------KNKKCFVCNEPT 303 (323)
Q Consensus 257 ~~p~~C~IC~e~~~~PVvt~CGH~FC~~Ci~~~~~----------------~s~~CP~Cr~~t 303 (323)
...+.|+||++.+.+|++|.|||.||+.||..|+. ....||+|+.++
T Consensus 16 ~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~I 78 (193)
T PLN03208 16 GGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDV 78 (193)
T ss_pred CCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcC
Confidence 34689999999999999999999999999999963 236899999865
No 5
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.00 E-value=2.2e-10 Score=80.03 Aligned_cols=38 Identities=37% Similarity=0.811 Sum_probs=30.3
Q ss_pred ccccccCCCCcEEccCCCcccHHHHHHhccCC----CCCCCC
Q 020671 262 CFICRKPFVDPVVTKCKHYFCEHCALKHHSKN----KKCFVC 299 (323)
Q Consensus 262 C~IC~e~~~~PVvt~CGH~FC~~Ci~~~~~~s----~~CP~C 299 (323)
|+||++.|.+||.++|||+||..||..++... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999999999999999999998732 579987
No 6
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=4e-10 Score=107.17 Aligned_cols=46 Identities=30% Similarity=0.676 Sum_probs=42.8
Q ss_pred CccccccccCCCCcEEccCCCcccHHHHHHhccCCCCCCCCCCCCC
Q 020671 259 PFACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCNEPTL 304 (323)
Q Consensus 259 p~~C~IC~e~~~~PVvt~CGH~FC~~Ci~~~~~~s~~CP~Cr~~t~ 304 (323)
...|.+|++...+|..|+|||.|||.||..|......||+||..+.
T Consensus 239 ~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~ 284 (293)
T KOG0317|consen 239 TRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQ 284 (293)
T ss_pred CCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCC
Confidence 4689999999999999999999999999999998888999998754
No 7
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.93 E-value=4.1e-10 Score=76.78 Aligned_cols=38 Identities=53% Similarity=1.016 Sum_probs=34.1
Q ss_pred ccccccCCCCc-EEccCCCcccHHHHHHhccCCCCCCCC
Q 020671 262 CFICRKPFVDP-VVTKCKHYFCEHCALKHHSKNKKCFVC 299 (323)
Q Consensus 262 C~IC~e~~~~P-Vvt~CGH~FC~~Ci~~~~~~s~~CP~C 299 (323)
|+||++.+.+| ++++|||+||..|+.+|+.....||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999999 689999999999999999888999988
No 8
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.84 E-value=3.6e-09 Score=78.02 Aligned_cols=44 Identities=20% Similarity=0.251 Sum_probs=41.5
Q ss_pred ccccccccCCCCcEEccCCCcccHHHHHHhccCCCCCCCCCCCC
Q 020671 260 FACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCNEPT 303 (323)
Q Consensus 260 ~~C~IC~e~~~~PVvt~CGH~FC~~Ci~~~~~~s~~CP~Cr~~t 303 (323)
+.|+||++.+.+|++++|||+||..||..|+.....||+|+.+.
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~ 45 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPL 45 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCC
Confidence 67999999999999999999999999999998888999999875
No 9
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.84 E-value=1.8e-09 Score=77.29 Aligned_cols=47 Identities=36% Similarity=0.764 Sum_probs=41.6
Q ss_pred ccccccccCCCCcEEccCCCc-ccHHHHHHhccCCCCCCCCCCCCCCc
Q 020671 260 FACFICRKPFVDPVVTKCKHY-FCEHCALKHHSKNKKCFVCNEPTLGI 306 (323)
Q Consensus 260 ~~C~IC~e~~~~PVvt~CGH~-FC~~Ci~~~~~~s~~CP~Cr~~t~gv 306 (323)
+.|.||++.+.++++++|||. ||..|+.+|+.....||+||++...|
T Consensus 3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 3 EECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV 50 (50)
T ss_dssp SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred CCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence 479999999999999999999 99999999999999999999987543
No 10
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.72 E-value=7.2e-09 Score=97.16 Aligned_cols=49 Identities=27% Similarity=0.722 Sum_probs=41.9
Q ss_pred CccccccccCCCCc--------EEccCCCcccHHHHHHhccCCCCCCCCCCCCCCch
Q 020671 259 PFACFICRKPFVDP--------VVTKCKHYFCEHCALKHHSKNKKCFVCNEPTLGIF 307 (323)
Q Consensus 259 p~~C~IC~e~~~~P--------Vvt~CGH~FC~~Ci~~~~~~s~~CP~Cr~~t~gvf 307 (323)
...|+||++.+.++ ++++|+|.||..||.+|+.....||+||.+...|.
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~ 230 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVI 230 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEe
Confidence 35799999987653 56799999999999999998899999999876553
No 11
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=6.6e-09 Score=93.10 Aligned_cols=46 Identities=33% Similarity=0.735 Sum_probs=40.4
Q ss_pred CCCccccccccCCC--CcEEccCCCcccHHHHHHhccCCCCCCCCCCC
Q 020671 257 SLPFACFICRKPFV--DPVVTKCKHYFCEHCALKHHSKNKKCFVCNEP 302 (323)
Q Consensus 257 ~~p~~C~IC~e~~~--~PVvt~CGH~FC~~Ci~~~~~~s~~CP~Cr~~ 302 (323)
+.-+.|+||+..+. -|+.|+|||+||..||...++....||+|++.
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kk 176 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKK 176 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccc
Confidence 33489999999994 45679999999999999999999999999973
No 12
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.71 E-value=3e-09 Score=74.06 Aligned_cols=40 Identities=33% Similarity=0.700 Sum_probs=35.0
Q ss_pred cccccccCCC---CcEEccCCCcccHHHHHHhccCCCCCCCCC
Q 020671 261 ACFICRKPFV---DPVVTKCKHYFCEHCALKHHSKNKKCFVCN 300 (323)
Q Consensus 261 ~C~IC~e~~~---~PVvt~CGH~FC~~Ci~~~~~~s~~CP~Cr 300 (323)
.|+||++.+. .++.++|||.||..|+..|+.....||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 5999999993 557889999999999999999889999996
No 13
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.67 E-value=1.1e-08 Score=69.83 Aligned_cols=38 Identities=45% Similarity=1.011 Sum_probs=35.8
Q ss_pred ccccccCCCCcE-EccCCCcccHHHHHHhcc--CCCCCCCC
Q 020671 262 CFICRKPFVDPV-VTKCKHYFCEHCALKHHS--KNKKCFVC 299 (323)
Q Consensus 262 C~IC~e~~~~PV-vt~CGH~FC~~Ci~~~~~--~s~~CP~C 299 (323)
|+||.+.+..|+ +++|||.||..|+.+|+. ....||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 899999999999999998 77889988
No 14
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.67 E-value=1.3e-08 Score=101.65 Aligned_cols=47 Identities=34% Similarity=0.776 Sum_probs=43.0
Q ss_pred CCccccccccCCCCcEEccCCCcccHHHHHHhccCCCCCCCCCCCCC
Q 020671 258 LPFACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCNEPTL 304 (323)
Q Consensus 258 ~p~~C~IC~e~~~~PVvt~CGH~FC~~Ci~~~~~~s~~CP~Cr~~t~ 304 (323)
..+.|+||++.|.+|++++|||.||..||..|+.....||+|+....
T Consensus 25 ~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~ 71 (397)
T TIGR00599 25 TSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQ 71 (397)
T ss_pred cccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCccc
Confidence 45799999999999999999999999999999987788999999754
No 15
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.57 E-value=4.8e-08 Score=68.38 Aligned_cols=41 Identities=39% Similarity=0.907 Sum_probs=36.3
Q ss_pred cccccccCC---CCcEEccCCCcccHHHHHHhccCCCCCCCCCC
Q 020671 261 ACFICRKPF---VDPVVTKCKHYFCEHCALKHHSKNKKCFVCNE 301 (323)
Q Consensus 261 ~C~IC~e~~---~~PVvt~CGH~FC~~Ci~~~~~~s~~CP~Cr~ 301 (323)
.|+||.+.+ ..|++|+|||+||..|+.........||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 489999999 46789999999999999999877789999974
No 16
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.52 E-value=7.1e-08 Score=64.89 Aligned_cols=42 Identities=38% Similarity=0.891 Sum_probs=36.6
Q ss_pred cccccccCCCCcEEcc-CCCcccHHHHHHhccC-CCCCCCCCCC
Q 020671 261 ACFICRKPFVDPVVTK-CKHYFCEHCALKHHSK-NKKCFVCNEP 302 (323)
Q Consensus 261 ~C~IC~e~~~~PVvt~-CGH~FC~~Ci~~~~~~-s~~CP~Cr~~ 302 (323)
.|+||++.+..++.+. |||.||..|+..|+.. ...||+|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4999999997777665 9999999999999985 7889999864
No 17
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.51 E-value=2.7e-08 Score=96.82 Aligned_cols=45 Identities=33% Similarity=0.671 Sum_probs=42.2
Q ss_pred CccccccccCCCCcEEccCCCcccHHHHHHhccCCCCCCCCCCCC
Q 020671 259 PFACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCNEPT 303 (323)
Q Consensus 259 p~~C~IC~e~~~~PVvt~CGH~FC~~Ci~~~~~~s~~CP~Cr~~t 303 (323)
-+.|.||.++|..|++|+|+|.||.-||+.++...+.||.|..++
T Consensus 23 lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~ 67 (442)
T KOG0287|consen 23 LLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTV 67 (442)
T ss_pred HHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceeccc
Confidence 368999999999999999999999999999999999999998863
No 18
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=4.4e-08 Score=99.38 Aligned_cols=47 Identities=32% Similarity=0.663 Sum_probs=41.4
Q ss_pred CccccccccCCCCcEEccCCCcccHHHHHHhcc-----CCCCCCCCCCCCCC
Q 020671 259 PFACFICRKPFVDPVVTKCKHYFCEHCALKHHS-----KNKKCFVCNEPTLG 305 (323)
Q Consensus 259 p~~C~IC~e~~~~PVvt~CGH~FC~~Ci~~~~~-----~s~~CP~Cr~~t~g 305 (323)
+..||||++...-|+.|.|||.||+.||++++. .-..||+|+..+..
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 568999999999999999999999999999987 34789999886543
No 19
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.50 E-value=4.5e-08 Score=93.69 Aligned_cols=44 Identities=34% Similarity=0.705 Sum_probs=42.0
Q ss_pred CccccccccCCCCcEEccCCCcccHHHHHHhccCCCCCCCCCCC
Q 020671 259 PFACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCNEP 302 (323)
Q Consensus 259 p~~C~IC~e~~~~PVvt~CGH~FC~~Ci~~~~~~s~~CP~Cr~~ 302 (323)
.+.|.||...|..|+.|.|||.||.-||..++...+.||+|+.+
T Consensus 25 ~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~ 68 (391)
T COG5432 25 MLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCRED 68 (391)
T ss_pred HHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCcccccc
Confidence 45899999999999999999999999999999999999999986
No 20
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.48 E-value=1.1e-07 Score=61.73 Aligned_cols=38 Identities=42% Similarity=0.941 Sum_probs=35.0
Q ss_pred ccccccCCCCcEEccCCCcccHHHHHHhcc-CCCCCCCC
Q 020671 262 CFICRKPFVDPVVTKCKHYFCEHCALKHHS-KNKKCFVC 299 (323)
Q Consensus 262 C~IC~e~~~~PVvt~CGH~FC~~Ci~~~~~-~s~~CP~C 299 (323)
|+||++....+++++|||.||..|+..|+. ....||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 789999999999999999999999999987 66789987
No 21
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=5.9e-08 Score=91.63 Aligned_cols=46 Identities=30% Similarity=0.707 Sum_probs=40.2
Q ss_pred CccccccccCCCCcEEccCCCcccHHHHHH-hccCCC-CCCCCCCCCC
Q 020671 259 PFACFICRKPFVDPVVTKCKHYFCEHCALK-HHSKNK-KCFVCNEPTL 304 (323)
Q Consensus 259 p~~C~IC~e~~~~PVvt~CGH~FC~~Ci~~-~~~~s~-~CP~Cr~~t~ 304 (323)
.++|+||++....|+.|+|||.||+.||.. |-.+.. .||+||+...
T Consensus 215 d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 215 DYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence 568999999999999999999999999999 766444 4999998654
No 22
>PHA02926 zinc finger-like protein; Provisional
Probab=98.46 E-value=8e-08 Score=89.06 Aligned_cols=47 Identities=26% Similarity=0.570 Sum_probs=38.4
Q ss_pred ccccccccCCC---------CcEEccCCCcccHHHHHHhccC------CCCCCCCCCCCCCc
Q 020671 260 FACFICRKPFV---------DPVVTKCKHYFCEHCALKHHSK------NKKCFVCNEPTLGI 306 (323)
Q Consensus 260 ~~C~IC~e~~~---------~PVvt~CGH~FC~~Ci~~~~~~------s~~CP~Cr~~t~gv 306 (323)
..|+||++... .+++.+|+|.||..||..|... ...||+||.....|
T Consensus 171 ~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I 232 (242)
T PHA02926 171 KECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNI 232 (242)
T ss_pred CCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeee
Confidence 47999999863 3578899999999999999973 35699999986644
No 23
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.38 E-value=3.8e-07 Score=70.41 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=38.3
Q ss_pred CccccccccCCCCcEEccCCCcccHHHHHHhccC-CCCCCCCCCCCC
Q 020671 259 PFACFICRKPFVDPVVTKCKHYFCEHCALKHHSK-NKKCFVCNEPTL 304 (323)
Q Consensus 259 p~~C~IC~e~~~~PVvt~CGH~FC~~Ci~~~~~~-s~~CP~Cr~~t~ 304 (323)
.|.|+|+.+++.+||+++|||+|+..||..|+.. ...||+|+.+..
T Consensus 4 ~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~ 50 (73)
T PF04564_consen 4 EFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLS 50 (73)
T ss_dssp GGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-S
T ss_pred ccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCC
Confidence 4789999999999999999999999999999997 899999988644
No 24
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.37 E-value=1.5e-07 Score=66.30 Aligned_cols=35 Identities=40% Similarity=0.931 Sum_probs=22.1
Q ss_pred ccccccCCCC----cEEccCCCcccHHHHHHhcc----CCCCCC
Q 020671 262 CFICRKPFVD----PVVTKCKHYFCEHCALKHHS----KNKKCF 297 (323)
Q Consensus 262 C~IC~e~~~~----PVvt~CGH~FC~~Ci~~~~~----~s~~CP 297 (323)
|+||++ +.+ |++++|||+||..|+.++.. ...+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 877 99999999999999999987 245565
No 25
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=2.9e-07 Score=90.44 Aligned_cols=118 Identities=16% Similarity=0.302 Sum_probs=82.7
Q ss_pred CccccccccccCCCCccceeecccccccccccchhHHHHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCCCCccccccccC
Q 020671 189 ICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKARKRNLALGGGDSDEEGVGQSDDDDEDSLPFACFICRKP 268 (323)
Q Consensus 189 iCKdYkeTG~CgfGDsCkFlHdR~dyk~GwqlerEwee~qk~kk~rl~~g~~~~eed~~~~e~~ddee~~p~~C~IC~e~ 268 (323)
+| +|..-|-|.||..|.++|......+|.+..++....+.+.+.+...... -+........-.......|.||++.
T Consensus 95 ~~-~~~~~~~~~~g~~~~~~~~~~~~~c~l~~~~pi~~~~~~~~~~~~~~~~---~~~~~e~~~a~~~s~~k~CGICme~ 170 (344)
T KOG1039|consen 95 EN-PYSNHGQCRFGNGDVTLNGNNPESCGLGTQHPICKRQYKNSMKRGSSCA---LSSAMERSFALQKSSEKECGICMET 170 (344)
T ss_pred cC-ccccccccccCCcccccccccccccccccccchhHHHHhhhhccccccc---chHhhhhccCcCccccccceehhhh
Confidence 45 5666899999999999999888888888888888777765543321110 0000000011112445689999999
Q ss_pred CCCcE--------EccCCCcccHHHHHHhcc--C-----CCCCCCCCCCCCCchhhH
Q 020671 269 FVDPV--------VTKCKHYFCEHCALKHHS--K-----NKKCFVCNEPTLGIFNTA 310 (323)
Q Consensus 269 ~~~PV--------vt~CGH~FC~~Ci~~~~~--~-----s~~CP~Cr~~t~gvfn~A 310 (323)
+..++ +.+|.|.||..||..|.. + ++.||.||.+...|....
T Consensus 171 i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS~ 227 (344)
T KOG1039|consen 171 INEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPSS 227 (344)
T ss_pred ccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccccccc
Confidence 86554 478999999999999984 4 699999999877776554
No 26
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=1.9e-07 Score=98.41 Aligned_cols=46 Identities=35% Similarity=0.811 Sum_probs=42.6
Q ss_pred CccccccccCCCCcEEccCCCcccHHHHHHhcc-CCCCCCCCCCCCC
Q 020671 259 PFACFICRKPFVDPVVTKCKHYFCEHCALKHHS-KNKKCFVCNEPTL 304 (323)
Q Consensus 259 p~~C~IC~e~~~~PVvt~CGH~FC~~Ci~~~~~-~s~~CP~Cr~~t~ 304 (323)
-+.|++|...|++.|++.|||.||..|+...+. ..++||.|+.+++
T Consensus 643 ~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFg 689 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFG 689 (698)
T ss_pred ceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 469999999999999999999999999999997 7899999999865
No 27
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=5.2e-07 Score=80.76 Aligned_cols=44 Identities=32% Similarity=0.753 Sum_probs=39.9
Q ss_pred CCccccccccCCCCcEEccCCCcccHHHHHHhccCCCCCCCCCC
Q 020671 258 LPFACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCNE 301 (323)
Q Consensus 258 ~p~~C~IC~e~~~~PVvt~CGH~FC~~Ci~~~~~~s~~CP~Cr~ 301 (323)
..+.|+||++.|..|++++|||+||..|+..++.....||.|+.
T Consensus 12 ~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 45689999999999999999999999999999876689999994
No 28
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.07 E-value=1.1e-06 Score=66.92 Aligned_cols=43 Identities=33% Similarity=0.843 Sum_probs=24.4
Q ss_pred ccccccccCCCCcE-EccCCCcccHHHHHHhccCCCCCCCCCCCCC
Q 020671 260 FACFICRKPFVDPV-VTKCKHYFCEHCALKHHSKNKKCFVCNEPTL 304 (323)
Q Consensus 260 ~~C~IC~e~~~~PV-vt~CGH~FC~~Ci~~~~~~s~~CP~Cr~~t~ 304 (323)
+.|++|...++.|| +..|.|.||+.|+...+. ..||+|..|..
T Consensus 8 LrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw 51 (65)
T PF14835_consen 8 LRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAW 51 (65)
T ss_dssp TS-SSS-S--SS-B---SSS--B-TTTGGGGTT--TB-SSS--B-S
T ss_pred cCCcHHHHHhcCCceeccCccHHHHHHhHHhcC--CCCCCcCChHH
Confidence 58999999999998 579999999999987654 45999988753
No 29
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.07 E-value=4.2e-06 Score=80.67 Aligned_cols=88 Identities=19% Similarity=0.411 Sum_probs=65.2
Q ss_pred ceeecccccccccccchhHHHHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCcEEc-cCCCcccHH
Q 020671 206 KFMHDRGDYKSGWQMEKEWEEAEKARKRNLALGGGDSDEEGVGQSDDDDEDSLPFACFICRKPFVDPVVT-KCKHYFCEH 284 (323)
Q Consensus 206 kFlHdR~dyk~GwqlerEwee~qk~kk~rl~~g~~~~eed~~~~e~~ddee~~p~~C~IC~e~~~~PVvt-~CGH~FC~~ 284 (323)
..+.+.++|.-...--++||..+.+++.....+. . -+. -.-..+++.|++|..++.+|+.| .|+|.||..
T Consensus 230 imit~EG~yVv~qpdvqsWe~Yq~r~~a~~~~~D------q-v~k--~~~~~i~LkCplc~~Llrnp~kT~cC~~~fc~e 300 (427)
T COG5222 230 IMITPEGGYVVAQPDVQSWEKYQQRTKAVAEIPD------Q-VYK--MQPPNISLKCPLCHCLLRNPMKTPCCGHTFCDE 300 (427)
T ss_pred eEEcCCCCeEEeccchHHHHHHHHHHHhhhhCch------h-hhc--cCCCCccccCcchhhhhhCcccCccccchHHHH
Confidence 3457888888777777999999877655332211 0 110 11246789999999999999999 589999999
Q ss_pred HHHHhcc-CCCCCCCCCCC
Q 020671 285 CALKHHS-KNKKCFVCNEP 302 (323)
Q Consensus 285 Ci~~~~~-~s~~CP~Cr~~ 302 (323)
||...+- ..+.||.|...
T Consensus 301 ci~~al~dsDf~CpnC~rk 319 (427)
T COG5222 301 CIGTALLDSDFKCPNCSRK 319 (427)
T ss_pred HHhhhhhhccccCCCcccc
Confidence 9997765 67999999763
No 30
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.04 E-value=3.7e-06 Score=65.19 Aligned_cols=40 Identities=40% Similarity=0.899 Sum_probs=33.5
Q ss_pred cccccccCCCCc-------------EEccCCCcccHHHHHHhccCCCCCCCCC
Q 020671 261 ACFICRKPFVDP-------------VVTKCKHYFCEHCALKHHSKNKKCFVCN 300 (323)
Q Consensus 261 ~C~IC~e~~~~P-------------Vvt~CGH~FC~~Ci~~~~~~s~~CP~Cr 300 (323)
.|.||++.+.++ +...|||.|...||.+|+.....||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 399999999333 3458999999999999999888999997
No 31
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=98.03 E-value=1.1e-06 Score=55.78 Aligned_cols=27 Identities=37% Similarity=1.074 Sum_probs=21.1
Q ss_pred cCCCCccccccccccCCCCccceeecc
Q 020671 185 YQPDICKDYKETGYCGYGDSCKFMHDR 211 (323)
Q Consensus 185 yqPDiCKdYkeTG~CgfGDsCkFlHdR 211 (323)
|...+|+.|.++|.|.||++|.|+|++
T Consensus 1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 1 YKTKLCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred CccccChhhccCCccCCCCCcCccCCC
Confidence 345789999999999999999999974
No 32
>PHA03096 p28-like protein; Provisional
Probab=97.92 E-value=3e-06 Score=81.49 Aligned_cols=92 Identities=14% Similarity=0.092 Sum_probs=65.4
Q ss_pred ccCCCCccceeecccccccccccchhHHHHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCCCCccccccccCCC-------
Q 020671 198 YCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKARKRNLALGGGDSDEEGVGQSDDDDEDSLPFACFICRKPFV------- 270 (323)
Q Consensus 198 ~CgfGDsCkFlHdR~dyk~GwqlerEwee~qk~kk~rl~~g~~~~eed~~~~e~~ddee~~p~~C~IC~e~~~------- 270 (323)
.|.+|++|.|||+.-+-..|-+..+..+..+..++++....... ..... -.|.||++...
T Consensus 130 ~c~~g~~c~~lHg~lC~~C~k~~Lhp~d~eqr~~h~k~c~~~~~-----------~~~~~--k~c~ic~e~~~~k~~~~~ 196 (284)
T PHA03096 130 NCYKGKYCEYLHGDICDICEKYLLHPTDIKQRYNEQKTCLSYQL-----------RLLLS--KICGICLENIKAKYIIKK 196 (284)
T ss_pred hcccccCcHHHHHHHHHhhcchhcCCcCHHHHHHHHHHHHHHHH-----------HHHHH--hhcccchhhhhhhccccc
Confidence 69999999999999999999888888777777665544321110 00000 47999999873
Q ss_pred -CcEEccCCCcccHHHHHHhcc---CCCCCCCCCCC
Q 020671 271 -DPVVTKCKHYFCEHCALKHHS---KNKKCFVCNEP 302 (323)
Q Consensus 271 -~PVvt~CGH~FC~~Ci~~~~~---~s~~CP~Cr~~ 302 (323)
..++..|.|.||..|+..|.. ....||.|+..
T Consensus 197 ~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~ 232 (284)
T PHA03096 197 YYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRL 232 (284)
T ss_pred cccccccCCcHHHHHHHHHHHHhhhhcccCccccch
Confidence 235779999999999999986 33455555443
No 33
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.92 E-value=4.9e-06 Score=51.71 Aligned_cols=26 Identities=50% Similarity=1.261 Sum_probs=23.3
Q ss_pred cCCCCccccccccccCCCCccceeecc
Q 020671 185 YQPDICKDYKETGYCGYGDSCKFMHDR 211 (323)
Q Consensus 185 yqPDiCKdYkeTG~CgfGDsCkFlHdR 211 (323)
|++-+|++| ++|.|.+|++|.|+|+.
T Consensus 2 ~k~~~C~~~-~~g~C~~g~~C~~~H~~ 27 (27)
T smart00356 2 YKTELCKFF-KRGYCPYGDRCKFAHPL 27 (27)
T ss_pred CCCCcCcCc-cCCCCCCCCCcCCCCcC
Confidence 567799999 88999999999999973
No 34
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=1.2e-05 Score=80.57 Aligned_cols=50 Identities=28% Similarity=0.733 Sum_probs=45.8
Q ss_pred CCCCccccccccCCCCcEEccCCCcccHHHHHHhccCCCCCCCCCCCCCC
Q 020671 256 DSLPFACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCNEPTLG 305 (323)
Q Consensus 256 e~~p~~C~IC~e~~~~PVvt~CGH~FC~~Ci~~~~~~s~~CP~Cr~~t~g 305 (323)
...+|.|.||...+..||+|+|||.||..|+.+.+.....||.|+.+..-
T Consensus 81 ~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred ccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 46689999999999999999999999999999988899999999987653
No 35
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.76 E-value=2.2e-05 Score=76.27 Aligned_cols=44 Identities=27% Similarity=0.683 Sum_probs=34.7
Q ss_pred ccccccccC-CCCcE----EccCCCcccHHHHHHhcc-CCCCCCCCCCCC
Q 020671 260 FACFICRKP-FVDPV----VTKCKHYFCEHCALKHHS-KNKKCFVCNEPT 303 (323)
Q Consensus 260 ~~C~IC~e~-~~~PV----vt~CGH~FC~~Ci~~~~~-~s~~CP~Cr~~t 303 (323)
..||||+.. +.+|. +..|||.||..|+...+. ....||.|+.+.
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~l 53 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPL 53 (309)
T ss_pred CCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCcc
Confidence 379999985 45663 237999999999999765 567899998853
No 36
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=1.6e-05 Score=78.05 Aligned_cols=55 Identities=27% Similarity=0.632 Sum_probs=47.1
Q ss_pred CCCCCccccccccCCCCcEEccCCCc-ccHHHHHHhccCCCCCCCCCCCCCCchhh
Q 020671 255 EDSLPFACFICRKPFVDPVVTKCKHY-FCEHCALKHHSKNKKCFVCNEPTLGIFNT 309 (323)
Q Consensus 255 ee~~p~~C~IC~e~~~~PVvt~CGH~-FC~~Ci~~~~~~s~~CP~Cr~~t~gvfn~ 309 (323)
+.+...+|.||+...++-++++|.|. .|..|+....-+...||+||.++.-.+++
T Consensus 286 ~~~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i 341 (349)
T KOG4265|consen 286 ESESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEI 341 (349)
T ss_pred cccCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhhee
Confidence 44556689999999999999999997 79999998877789999999997766554
No 37
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=1.6e-05 Score=76.66 Aligned_cols=59 Identities=27% Similarity=0.497 Sum_probs=48.4
Q ss_pred ccccccccCCCCcEEccCCCcccHHHHHHhcc-CCCCCCCCCCCCCCchhhHHHHHHHHH
Q 020671 260 FACFICRKPFVDPVVTKCKHYFCEHCALKHHS-KNKKCFVCNEPTLGIFNTALEIRKRMA 318 (323)
Q Consensus 260 ~~C~IC~e~~~~PVvt~CGH~FC~~Ci~~~~~-~s~~CP~Cr~~t~gvfn~Ak~L~~kLk 318 (323)
-.|+||+....-|+.+.|+|.||.-||...+. ....|++||.++...+-....|...|+
T Consensus 8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~~psl~~~LK 67 (324)
T KOG0824|consen 8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDFEPSLKYRLK 67 (324)
T ss_pred CcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcchhcchhhhhhhc
Confidence 36999999999999999999999999999887 445599999998766655555555554
No 38
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.69 E-value=2.8e-05 Score=57.82 Aligned_cols=43 Identities=35% Similarity=0.668 Sum_probs=31.5
Q ss_pred CCCCccccccccCCCCcEEc-cCCCcccHHHHHHhcc--CCCCCCC
Q 020671 256 DSLPFACFICRKPFVDPVVT-KCKHYFCEHCALKHHS--KNKKCFV 298 (323)
Q Consensus 256 e~~p~~C~IC~e~~~~PVvt-~CGH~FC~~Ci~~~~~--~s~~CP~ 298 (323)
....+.|||.+..|.+||.. .|||.|....|++++. ....||+
T Consensus 8 ~~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 8 GTISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp SB--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred cEeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 56778999999999999975 8999999999999994 6788998
No 39
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=8.9e-06 Score=60.29 Aligned_cols=48 Identities=29% Similarity=0.673 Sum_probs=41.7
Q ss_pred ccccccccCCCCcEEccCCCc-ccHHHHHHhcc-CCCCCCCCCCCCCCch
Q 020671 260 FACFICRKPFVDPVVTKCKHY-FCEHCALKHHS-KNKKCFVCNEPTLGIF 307 (323)
Q Consensus 260 ~~C~IC~e~~~~PVvt~CGH~-FC~~Ci~~~~~-~s~~CP~Cr~~t~gvf 307 (323)
.+|.||.+...+.|+.-|||. .|..|.++.++ ....||+||++..+|.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvI 57 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVI 57 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHH
Confidence 469999999999999999997 89999998887 6788999999876653
No 40
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=5.1e-05 Score=74.81 Aligned_cols=44 Identities=23% Similarity=0.554 Sum_probs=38.0
Q ss_pred ccccccccCCCCc---EEccCCCcccHHHHHHhccCCCC-CCCCCCCC
Q 020671 260 FACFICRKPFVDP---VVTKCKHYFCEHCALKHHSKNKK-CFVCNEPT 303 (323)
Q Consensus 260 ~~C~IC~e~~~~P---Vvt~CGH~FC~~Ci~~~~~~s~~-CP~Cr~~t 303 (323)
+.|.||++.|... .+++|.|.|-..||..|+...++ ||+|+...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di 277 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDI 277 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcC
Confidence 7899999999754 46899999999999999987755 99998853
No 41
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=1.1e-05 Score=79.29 Aligned_cols=47 Identities=28% Similarity=0.615 Sum_probs=41.3
Q ss_pred CCCCccccccccCCCCcEEc-cCCCcccHHHHHHhcc-CCCCCCCCCCC
Q 020671 256 DSLPFACFICRKPFVDPVVT-KCKHYFCEHCALKHHS-KNKKCFVCNEP 302 (323)
Q Consensus 256 e~~p~~C~IC~e~~~~PVvt-~CGH~FC~~Ci~~~~~-~s~~CP~Cr~~ 302 (323)
-...+.|+||+.+++..+++ .|.|.||..||...++ ....||.||+.
T Consensus 40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~ 88 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKK 88 (381)
T ss_pred hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhh
Confidence 35578999999999988877 6999999999999887 78999999983
No 42
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.46 E-value=3.7e-05 Score=74.83 Aligned_cols=48 Identities=27% Similarity=0.663 Sum_probs=42.4
Q ss_pred CccccccccCCCCcE-EccCCCcccHHHHHHhccCCCCCCCCCCCCCCc
Q 020671 259 PFACFICRKPFVDPV-VTKCKHYFCEHCALKHHSKNKKCFVCNEPTLGI 306 (323)
Q Consensus 259 p~~C~IC~e~~~~PV-vt~CGH~FC~~Ci~~~~~~s~~CP~Cr~~t~gv 306 (323)
...|.+|..+|.++. ++.|-|.||..||..++.....||.|....++.
T Consensus 15 ~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 15 HITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred ceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 458999999999986 458999999999999999999999999866554
No 43
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.46 E-value=8.4e-05 Score=59.67 Aligned_cols=43 Identities=49% Similarity=0.973 Sum_probs=32.8
Q ss_pred cccccccCCC-----------C-cEEc-cCCCcccHHHHHHhcc---CCCCCCCCCCCC
Q 020671 261 ACFICRKPFV-----------D-PVVT-KCKHYFCEHCALKHHS---KNKKCFVCNEPT 303 (323)
Q Consensus 261 ~C~IC~e~~~-----------~-PVvt-~CGH~FC~~Ci~~~~~---~s~~CP~Cr~~t 303 (323)
.|.||+..|. + |++. .|+|.|-..||.+|+. ....||+||++.
T Consensus 23 ~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w 81 (85)
T PF12861_consen 23 VCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPW 81 (85)
T ss_pred ceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCee
Confidence 4666666652 2 4443 7999999999999998 358999999874
No 44
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=4.3e-05 Score=79.25 Aligned_cols=43 Identities=23% Similarity=0.613 Sum_probs=40.4
Q ss_pred CccccccccCCCC-----cEEccCCCcccHHHHHHhccCCCCCCCCCC
Q 020671 259 PFACFICRKPFVD-----PVVTKCKHYFCEHCALKHHSKNKKCFVCNE 301 (323)
Q Consensus 259 p~~C~IC~e~~~~-----PVvt~CGH~FC~~Ci~~~~~~s~~CP~Cr~ 301 (323)
...|+||++.+.. |..++|+|.||..|+..|+.....||.||.
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~ 338 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRT 338 (543)
T ss_pred CCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchh
Confidence 4579999999988 789999999999999999999999999998
No 45
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.00011 Score=71.28 Aligned_cols=46 Identities=30% Similarity=0.552 Sum_probs=39.6
Q ss_pred CccccccccCCCC---cEEccCCCcccHHHHHHhcc-CCCCCCCCCCCCC
Q 020671 259 PFACFICRKPFVD---PVVTKCKHYFCEHCALKHHS-KNKKCFVCNEPTL 304 (323)
Q Consensus 259 p~~C~IC~e~~~~---PVvt~CGH~FC~~Ci~~~~~-~s~~CP~Cr~~t~ 304 (323)
-..|.||+..|.. -++++|.|.|--.|+..|+- ....||+||.+..
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 3589999999842 36899999999999999997 7889999998764
No 46
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.00024 Score=67.98 Aligned_cols=51 Identities=25% Similarity=0.561 Sum_probs=42.3
Q ss_pred CCCCccccccccCCCCcEEc-cCCCcccHHHHHHhcc--CCCCCCCCCCCCCCc
Q 020671 256 DSLPFACFICRKPFVDPVVT-KCKHYFCEHCALKHHS--KNKKCFVCNEPTLGI 306 (323)
Q Consensus 256 e~~p~~C~IC~e~~~~PVvt-~CGH~FC~~Ci~~~~~--~s~~CP~Cr~~t~gv 306 (323)
-.....|++|.+....|.+. +|+|.||..|+..... .+..||.|+.+...+
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~l 289 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEPL 289 (298)
T ss_pred ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCcch
Confidence 34456899999999999766 5999999999998876 568999999876543
No 47
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.00023 Score=70.62 Aligned_cols=43 Identities=26% Similarity=0.666 Sum_probs=37.7
Q ss_pred ccccccccCCC-------------CcEEccCCCcccHHHHHHhccCCCCCCCCCCC
Q 020671 260 FACFICRKPFV-------------DPVVTKCKHYFCEHCALKHHSKNKKCFVCNEP 302 (323)
Q Consensus 260 ~~C~IC~e~~~-------------~PVvt~CGH~FC~~Ci~~~~~~s~~CP~Cr~~ 302 (323)
..|.||++-.. .|-.++|||.|-..|+..|......||+||.|
T Consensus 288 ~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p 343 (491)
T COG5243 288 RTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRP 343 (491)
T ss_pred CeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCc
Confidence 47999998842 23678999999999999999999999999997
No 48
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.84 E-value=0.00051 Score=68.81 Aligned_cols=44 Identities=41% Similarity=0.868 Sum_probs=40.5
Q ss_pred CccccccccCCCCcEEc-cCCCcccHHHHHHhccCCCCCCCCCCC
Q 020671 259 PFACFICRKPFVDPVVT-KCKHYFCEHCALKHHSKNKKCFVCNEP 302 (323)
Q Consensus 259 p~~C~IC~e~~~~PVvt-~CGH~FC~~Ci~~~~~~s~~CP~Cr~~ 302 (323)
.+.|++|...+.+|+.+ .|||.||..|+..|......||.|+..
T Consensus 21 ~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~ 65 (391)
T KOG0297|consen 21 NLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQE 65 (391)
T ss_pred cccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccc
Confidence 46899999999999995 999999999999999989999999775
No 49
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.0012 Score=67.57 Aligned_cols=46 Identities=30% Similarity=0.644 Sum_probs=37.9
Q ss_pred ccccccccCC-----------------CCcEEccCCCcccHHHHHHhcc-CCCCCCCCCCCCCC
Q 020671 260 FACFICRKPF-----------------VDPVVTKCKHYFCEHCALKHHS-KNKKCFVCNEPTLG 305 (323)
Q Consensus 260 ~~C~IC~e~~-----------------~~PVvt~CGH~FC~~Ci~~~~~-~s~~CP~Cr~~t~g 305 (323)
.-|+||+..+ .+-++|+|.|.|-..|+++|.. ....||+||.+..+
T Consensus 572 ~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 572 NDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 4699999876 2235789999999999999998 45599999998654
No 50
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.43 E-value=0.001 Score=68.63 Aligned_cols=48 Identities=29% Similarity=0.638 Sum_probs=40.6
Q ss_pred CCCCCccccccccCCCCcEEccCCCcccHHHHHHhcc-----CCCCCCCCCCC
Q 020671 255 EDSLPFACFICRKPFVDPVVTKCKHYFCEHCALKHHS-----KNKKCFVCNEP 302 (323)
Q Consensus 255 ee~~p~~C~IC~e~~~~PVvt~CGH~FC~~Ci~~~~~-----~s~~CP~Cr~~ 302 (323)
+......|.+|.++..+++.+.|.|.||..|+.++.. ....||.|..+
T Consensus 532 enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~ 584 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIG 584 (791)
T ss_pred cccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccc
Confidence 3344558999999999999999999999999988765 45899999764
No 51
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.36 E-value=0.0006 Score=72.88 Aligned_cols=48 Identities=25% Similarity=0.409 Sum_probs=39.9
Q ss_pred CccccccccCCCCcEE---ccCCCcccHHHHHHhccCCCCCCCCCCCCCCc
Q 020671 259 PFACFICRKPFVDPVV---TKCKHYFCEHCALKHHSKNKKCFVCNEPTLGI 306 (323)
Q Consensus 259 p~~C~IC~e~~~~PVv---t~CGH~FC~~Ci~~~~~~s~~CP~Cr~~t~gv 306 (323)
...|++|+..+.+..+ ..|+|+||..||..|.+....||+|+..+.-|
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEV 173 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhee
Confidence 3479999998876543 47999999999999999999999999865433
No 52
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.35 E-value=0.0057 Score=57.95 Aligned_cols=49 Identities=31% Similarity=0.544 Sum_probs=38.9
Q ss_pred CCCCCCccccccccCCCC--c--EEccCCCcccHHHHHHhccCCCCCCCCCCCC
Q 020671 254 DEDSLPFACFICRKPFVD--P--VVTKCKHYFCEHCALKHHSKNKKCFVCNEPT 303 (323)
Q Consensus 254 dee~~p~~C~IC~e~~~~--P--Vvt~CGH~FC~~Ci~~~~~~s~~CP~Cr~~t 303 (323)
+....+|.|||....+.. + .+-+|||+|++.++.+.. ....||+|+.++
T Consensus 108 ~~~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f 160 (260)
T PF04641_consen 108 DNSEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPF 160 (260)
T ss_pred ccCCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCcc
Confidence 345678999999998832 2 245999999999999885 467899999973
No 53
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.0054 Score=58.43 Aligned_cols=46 Identities=35% Similarity=0.627 Sum_probs=38.4
Q ss_pred ccccccccCC------CCcEEccCCCcccHHHHHHhcc-CCCCCCCCCCCCCC
Q 020671 260 FACFICRKPF------VDPVVTKCKHYFCEHCALKHHS-KNKKCFVCNEPTLG 305 (323)
Q Consensus 260 ~~C~IC~e~~------~~PVvt~CGH~FC~~Ci~~~~~-~s~~CP~Cr~~t~g 305 (323)
+.|-||.+.| ..|-++.|||.||..|+..... ....||.||.++.-
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~ 56 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEI 56 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccC
Confidence 4799999888 4577888999999999998887 56789999998643
No 54
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.0034 Score=62.18 Aligned_cols=46 Identities=28% Similarity=0.675 Sum_probs=41.7
Q ss_pred ccccccccCCCCcEEccCCCcccHHHHHHhccCCCCCCCCCCCCCC
Q 020671 260 FACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCNEPTLG 305 (323)
Q Consensus 260 ~~C~IC~e~~~~PVvt~CGH~FC~~Ci~~~~~~s~~CP~Cr~~t~g 305 (323)
..|+||.--..+.|.++|+|.-|..||.+++-..+.|..|...+..
T Consensus 423 ~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 423 NLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred ccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 3699999999999999999999999999999999999999876554
No 55
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.80 E-value=0.0053 Score=60.72 Aligned_cols=47 Identities=26% Similarity=0.598 Sum_probs=41.0
Q ss_pred cccccccCCCCcEEccCCCcccHHHHHHhcc--CCCCCCCCCCCCCCch
Q 020671 261 ACFICRKPFVDPVVTKCKHYFCEHCALKHHS--KNKKCFVCNEPTLGIF 307 (323)
Q Consensus 261 ~C~IC~e~~~~PVvt~CGH~FC~~Ci~~~~~--~s~~CP~Cr~~t~gvf 307 (323)
.|.||-+.+.-..+++|+|-.|.-|+.+... ..+.|++|+..+..|+
T Consensus 63 ~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V~ 111 (493)
T COG5236 63 NCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAVV 111 (493)
T ss_pred eeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccceEE
Confidence 6999999998888999999999999987755 7899999999766554
No 56
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.76 E-value=0.0077 Score=57.18 Aligned_cols=45 Identities=20% Similarity=0.354 Sum_probs=40.3
Q ss_pred CCccccccccCCCCc----EEccCCCcccHHHHHHhccCCCCCCCCCCC
Q 020671 258 LPFACFICRKPFVDP----VVTKCKHYFCEHCALKHHSKNKKCFVCNEP 302 (323)
Q Consensus 258 ~p~~C~IC~e~~~~P----Vvt~CGH~FC~~Ci~~~~~~s~~CP~Cr~~ 302 (323)
..|.|+||+..+.|. ++.+|||+||..|+.+.++....||+|..+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~p 268 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKP 268 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCc
Confidence 568999999999775 356899999999999999999999999885
No 57
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.59 E-value=0.01 Score=60.30 Aligned_cols=100 Identities=20% Similarity=0.349 Sum_probs=64.9
Q ss_pred CceeecceeeccCCCCccccccccccCCC----CccceeecccccccccccchhHHHHHHHHHhhhhcCCCCCCCCCCCC
Q 020671 174 SAHIRVTARFDYQPDICKDYKETGYCGYG----DSCKFMHDRGDYKSGWQMEKEWEEAEKARKRNLALGGGDSDEEGVGQ 249 (323)
Q Consensus 174 ~~nir~t~~~DyqPDiCKdYkeTG~CgfG----DsCkFlHdR~dyk~GwqlerEwee~qk~kk~rl~~g~~~~eed~~~~ 249 (323)
|.++=+...|.=|-|.=-+|.+---|.|. |.|..+|...- +.. + .. +...
T Consensus 113 pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e~Chll~V~~v-----e~~----~-----------s~------d~as 166 (493)
T KOG0804|consen 113 PNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPEVCHLLYVDRV-----EVT----E-----------SE------DGAS 166 (493)
T ss_pred CceEEEEEEeccchhHHHHHHHcCCCcCCCCCccceeEEEEEEE-----EEE----e-----------cc------cCCC
Confidence 45555566677777777777765557776 78988886541 111 0 00 0001
Q ss_pred CCCCCCCCCCccccccccCCCCcE----EccCCCcccHHHHHHhccCCCCCCCCCCC
Q 020671 250 SDDDDEDSLPFACFICRKPFVDPV----VTKCKHYFCEHCALKHHSKNKKCFVCNEP 302 (323)
Q Consensus 250 e~~ddee~~p~~C~IC~e~~~~PV----vt~CGH~FC~~Ci~~~~~~s~~CP~Cr~~ 302 (323)
+..-.--++| .|+||++....-+ .+.|.|.|--.|+..|.. ..||+||.-
T Consensus 167 ~~~~~~tELP-TCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~ 220 (493)
T KOG0804|consen 167 EPPTGLTELP-TCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYC 220 (493)
T ss_pred CCCCCcccCC-CcchhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhhh
Confidence 1111233456 7999999885443 458999999999999975 689999863
No 58
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.0054 Score=60.68 Aligned_cols=51 Identities=25% Similarity=0.494 Sum_probs=38.7
Q ss_pred CCCCCCCccccccccCCCCcEEccCCCcccHHHHHHhccCCCCCCCCCCCCCCc
Q 020671 253 DDEDSLPFACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCNEPTLGI 306 (323)
Q Consensus 253 ddee~~p~~C~IC~e~~~~PVvt~CGH~FC~~Ci~~~~~~s~~CP~Cr~~t~gv 306 (323)
..+...|..|.||...+.+-+..+|||.-| |..-.. ....||+||.....+
T Consensus 299 ~~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~-~l~~CPvCR~rI~~~ 349 (355)
T KOG1571|consen 299 FRELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSK-HLPQCPVCRQRIRLV 349 (355)
T ss_pred ccccCCCCceEEecCCccceeeecCCcEEE--chHHHh-hCCCCchhHHHHHHH
Confidence 346678889999999999999999999865 444332 345699999875544
No 59
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=95.41 E-value=0.0063 Score=61.17 Aligned_cols=48 Identities=23% Similarity=0.533 Sum_probs=41.6
Q ss_pred cccccccCCCCcEEccCCCcccHHHHHHhcc--CCCCCCCCCCCCCCchh
Q 020671 261 ACFICRKPFVDPVVTKCKHYFCEHCALKHHS--KNKKCFVCNEPTLGIFN 308 (323)
Q Consensus 261 ~C~IC~e~~~~PVvt~CGH~FC~~Ci~~~~~--~s~~CP~Cr~~t~gvfn 308 (323)
.|.||-+.-++--+-+|||..|..|+..|.. ....||.||....|...
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~ 420 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEP 420 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccccc
Confidence 6999999988887889999999999999985 46899999998776544
No 60
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=95.34 E-value=0.015 Score=41.91 Aligned_cols=39 Identities=33% Similarity=0.820 Sum_probs=32.2
Q ss_pred cccccc--CCCCcEEccCC-----CcccHHHHHHhcc--CCCCCCCCC
Q 020671 262 CFICRK--PFVDPVVTKCK-----HYFCEHCALKHHS--KNKKCFVCN 300 (323)
Q Consensus 262 C~IC~e--~~~~PVvt~CG-----H~FC~~Ci~~~~~--~s~~CP~Cr 300 (323)
|-||+. ...+|.+++|. |+|-..|+.+|+. ....||+|+
T Consensus 2 CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 2 CRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred ccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 889987 44678888985 8899999999996 456999994
No 61
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=95.32 E-value=0.0097 Score=60.46 Aligned_cols=33 Identities=24% Similarity=0.751 Sum_probs=30.3
Q ss_pred CccccccccCCCCcEEccCCCcccHHHHHHhcc
Q 020671 259 PFACFICRKPFVDPVVTKCKHYFCEHCALKHHS 291 (323)
Q Consensus 259 p~~C~IC~e~~~~PVvt~CGH~FC~~Ci~~~~~ 291 (323)
.+.|+||...|.+||+++|+|..|..|++..+.
T Consensus 4 elkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 4 ELKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 358999999999999999999999999997765
No 62
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.29 E-value=0.0066 Score=57.12 Aligned_cols=42 Identities=31% Similarity=0.722 Sum_probs=29.7
Q ss_pred cccccccCC-CCc-EEccCCCcccHHHHHHhccCCCCCCCCCCCCC
Q 020671 261 ACFICRKPF-VDP-VVTKCKHYFCEHCALKHHSKNKKCFVCNEPTL 304 (323)
Q Consensus 261 ~C~IC~e~~-~~P-Vvt~CGH~FC~~Ci~~~~~~s~~CP~Cr~~t~ 304 (323)
-|..|.... ..| -+|.|+|+||..|...... ..||+|++++.
T Consensus 5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~--~~C~lCkk~ir 48 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKASSP--DVCPLCKKSIR 48 (233)
T ss_pred EeccccccCCCCceeeeechhhhhhhhcccCCc--cccccccceee
Confidence 366665543 333 3789999999999876443 39999999643
No 63
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=0.014 Score=58.73 Aligned_cols=56 Identities=21% Similarity=0.387 Sum_probs=42.3
Q ss_pred CCccccccccCCCCc---EEccCCCcccHHHHHHhcc--------CCCCCCCCCCCCCCchhhHHHH
Q 020671 258 LPFACFICRKPFVDP---VVTKCKHYFCEHCALKHHS--------KNKKCFVCNEPTLGIFNTALEI 313 (323)
Q Consensus 258 ~p~~C~IC~e~~~~P---Vvt~CGH~FC~~Ci~~~~~--------~s~~CP~Cr~~t~gvfn~Ak~L 313 (323)
.-|.|.||.+..... +.++|+|+||..|+..++. ...+||.+.-+.....+..++|
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~a~~g~vKel 249 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSVAPPGQVKEL 249 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCcccCCchHHHHH
Confidence 357899999987543 4789999999999999886 4567887776655555555554
No 64
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=95.02 E-value=0.011 Score=57.10 Aligned_cols=35 Identities=31% Similarity=0.895 Sum_probs=29.4
Q ss_pred ecceeeccCCCCccccccccccCCCCccceeeccc
Q 020671 178 RVTARFDYQPDICKDYKETGYCGYGDSCKFMHDRG 212 (323)
Q Consensus 178 r~t~~~DyqPDiCKdYkeTG~CgfGDsCkFlHdR~ 212 (323)
......-|.=.+|..|..||+|.||..|+|+|...
T Consensus 168 ~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~ 202 (332)
T KOG1677|consen 168 QVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEP 202 (332)
T ss_pred hhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCc
Confidence 34445667888999999999999999999999754
No 65
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=94.87 E-value=0.019 Score=45.84 Aligned_cols=28 Identities=21% Similarity=0.513 Sum_probs=25.9
Q ss_pred cCCCcccHHHHHHhccCCCCCCCCCCCC
Q 020671 276 KCKHYFCEHCALKHHSKNKKCFVCNEPT 303 (323)
Q Consensus 276 ~CGH~FC~~Ci~~~~~~s~~CP~Cr~~t 303 (323)
.|.|.|-..||.+|+.....||++++..
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w 80 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKGVCPLDRQTW 80 (88)
T ss_pred ecchHHHHHHHHHHHhhCCCCCCCCcee
Confidence 6999999999999999889999998864
No 66
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=0.014 Score=58.83 Aligned_cols=42 Identities=26% Similarity=0.651 Sum_probs=35.7
Q ss_pred ccccccccCCCCc-----EEccCCCcccHHHHHHhcc--CCCCCCCCCC
Q 020671 260 FACFICRKPFVDP-----VVTKCKHYFCEHCALKHHS--KNKKCFVCNE 301 (323)
Q Consensus 260 ~~C~IC~e~~~~P-----Vvt~CGH~FC~~Ci~~~~~--~s~~CP~Cr~ 301 (323)
..|+||++.+.-| +.+.|||.|-+.||.+|+. ....||.|.-
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ 53 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSG 53 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCC
Confidence 4799999999777 3578999999999999996 3478999954
No 67
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.79 E-value=0.015 Score=62.39 Aligned_cols=42 Identities=31% Similarity=0.713 Sum_probs=37.2
Q ss_pred ccccccccCCCCcEEccCCCcccHHHHHHhcc--CCCCCCCCCCC
Q 020671 260 FACFICRKPFVDPVVTKCKHYFCEHCALKHHS--KNKKCFVCNEP 302 (323)
Q Consensus 260 ~~C~IC~e~~~~PVvt~CGH~FC~~Ci~~~~~--~s~~CP~Cr~~ 302 (323)
+.|+||.+ ...++++.|+|.||..|+...+. ....||.|+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~ 498 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNV 498 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHH
Confidence 78999999 88899999999999999999987 44579999763
No 68
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=94.69 E-value=0.013 Score=43.45 Aligned_cols=42 Identities=24% Similarity=0.585 Sum_probs=34.6
Q ss_pred cccccccCCCCcEEccCCCcccHHHHHHhccCCCCCCCCCCCCC
Q 020671 261 ACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCNEPTL 304 (323)
Q Consensus 261 ~C~IC~e~~~~PVvt~CGH~FC~~Ci~~~~~~s~~CP~Cr~~t~ 304 (323)
.|..|...-...++++|||..|..|+--+. -..||+|+.++.
T Consensus 9 ~~~~~~~~~~~~~~~pCgH~I~~~~f~~~r--YngCPfC~~~~~ 50 (55)
T PF14447_consen 9 PCVFCGFVGTKGTVLPCGHLICDNCFPGER--YNGCPFCGTPFE 50 (55)
T ss_pred eEEEccccccccccccccceeeccccChhh--ccCCCCCCCccc
Confidence 578888887888999999999999986543 368999988753
No 69
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.022 Score=55.93 Aligned_cols=47 Identities=23% Similarity=0.400 Sum_probs=39.3
Q ss_pred CCCccccccccCCCCcEEcc-CCCcccHHHHHHhccCCCCCCCCCCCC
Q 020671 257 SLPFACFICRKPFVDPVVTK-CKHYFCEHCALKHHSKNKKCFVCNEPT 303 (323)
Q Consensus 257 ~~p~~C~IC~e~~~~PVvt~-CGH~FC~~Ci~~~~~~s~~CP~Cr~~t 303 (323)
.....|+||+....||.++. .|-+||..|+..+......||+=+.|.
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 33458999999999997664 599999999999999889999876553
No 70
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.54 E-value=0.012 Score=56.43 Aligned_cols=42 Identities=26% Similarity=0.581 Sum_probs=35.4
Q ss_pred cccccccCCCCc----------EEccCCCcccHHHHHHhcc--CCCCCCCCCCC
Q 020671 261 ACFICRKPFVDP----------VVTKCKHYFCEHCALKHHS--KNKKCFVCNEP 302 (323)
Q Consensus 261 ~C~IC~e~~~~P----------Vvt~CGH~FC~~Ci~~~~~--~s~~CP~Cr~~ 302 (323)
-|.||.+.+... -.+.|+|+|-+.||+.|.- +...||.|...
T Consensus 226 vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKek 279 (328)
T KOG1734|consen 226 VCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEK 279 (328)
T ss_pred hhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHH
Confidence 699999888443 3679999999999999976 77899999763
No 71
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.46 E-value=0.018 Score=57.78 Aligned_cols=41 Identities=24% Similarity=0.610 Sum_probs=30.8
Q ss_pred ccccccccCCCCc---E-EccCCCcccHHHHHHhcc--C-CCCCCCCC
Q 020671 260 FACFICRKPFVDP---V-VTKCKHYFCEHCALKHHS--K-NKKCFVCN 300 (323)
Q Consensus 260 ~~C~IC~e~~~~P---V-vt~CGH~FC~~Ci~~~~~--~-s~~CP~Cr 300 (323)
..|.||.+.+-+- - +-.|||+|-..|+.+|+. . ++.||+|+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence 3699995544221 1 234999999999999998 3 37899998
No 72
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.21 E-value=0.045 Score=51.52 Aligned_cols=57 Identities=19% Similarity=0.491 Sum_probs=44.1
Q ss_pred cccccccCCC--CcEEccCCCcccHHHHHHhcc--------CCCCCCCCCCCCCCchhhHHHHHHHH
Q 020671 261 ACFICRKPFV--DPVVTKCKHYFCEHCALKHHS--------KNKKCFVCNEPTLGIFNTALEIRKRM 317 (323)
Q Consensus 261 ~C~IC~e~~~--~PVvt~CGH~FC~~Ci~~~~~--------~s~~CP~Cr~~t~gvfn~Ak~L~~kL 317 (323)
-|.+|...+. +.+.+.|-|.|-|.|+-+|-. ....||.|..+++.-.|++.-+...|
T Consensus 52 NC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~NlvsPva~aL 118 (299)
T KOG3970|consen 52 NCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINLVSPVAEAL 118 (299)
T ss_pred CCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccccchhHHHH
Confidence 4999999885 457789999999999999865 34789999998776666555444444
No 73
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=94.01 E-value=0.024 Score=55.44 Aligned_cols=40 Identities=33% Similarity=0.741 Sum_probs=31.2
Q ss_pred cccccccCCC-CcEEccCCCcccHHHHHHhccCCCCCCCCCCC
Q 020671 261 ACFICRKPFV-DPVVTKCKHYFCEHCALKHHSKNKKCFVCNEP 302 (323)
Q Consensus 261 ~C~IC~e~~~-~PVvt~CGH~FC~~Ci~~~~~~s~~CP~Cr~~ 302 (323)
-|.-|-..+. -..+++|.|+||+.|++-.- .+.||.|.-.
T Consensus 92 fCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~--dK~Cp~C~d~ 132 (389)
T KOG2932|consen 92 FCDRCDFPIAIYGRMIPCKHVFCLECARSDS--DKICPLCDDR 132 (389)
T ss_pred eecccCCcceeeecccccchhhhhhhhhcCc--cccCcCcccH
Confidence 5888887663 34578999999999998643 6899999653
No 74
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.86 E-value=0.013 Score=56.86 Aligned_cols=40 Identities=28% Similarity=0.644 Sum_probs=34.1
Q ss_pred CccccccccCCCCcEEccCCCc-ccHHHHHHhccCCCCCCCCCCC
Q 020671 259 PFACFICRKPFVDPVVTKCKHY-FCEHCALKHHSKNKKCFVCNEP 302 (323)
Q Consensus 259 p~~C~IC~e~~~~PVvt~CGH~-FC~~Ci~~~~~~s~~CP~Cr~~ 302 (323)
...|.||++.+.+-+.++|||. -|..|-.+ ...||+||+-
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr----m~eCPICRqy 340 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKR----MNECPICRQY 340 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccc----cccCchHHHH
Confidence 4579999999999999999996 69999764 3489999874
No 75
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.67 E-value=0.018 Score=45.61 Aligned_cols=43 Identities=40% Similarity=0.798 Sum_probs=33.0
Q ss_pred cccccccCCC------------CcEEc-cCCCcccHHHHHHhcc---CCCCCCCCCCCC
Q 020671 261 ACFICRKPFV------------DPVVT-KCKHYFCEHCALKHHS---KNKKCFVCNEPT 303 (323)
Q Consensus 261 ~C~IC~e~~~------------~PVvt-~CGH~FC~~Ci~~~~~---~s~~CP~Cr~~t 303 (323)
.|.||+-.|. -|++. .|.|.|-..||++|+. ....||+||+..
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 5777776662 24444 6999999999999987 447899999764
No 76
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=92.53 E-value=0.12 Score=50.35 Aligned_cols=54 Identities=30% Similarity=0.573 Sum_probs=40.8
Q ss_pred CCCCccccccccCCCCcEEc-cCCCcccHHHHHHhccCCCCCCCCCCCCCCchhhHHH
Q 020671 256 DSLPFACFICRKPFVDPVVT-KCKHYFCEHCALKHHSKNKKCFVCNEPTLGIFNTALE 312 (323)
Q Consensus 256 e~~p~~C~IC~e~~~~PVvt-~CGH~FC~~Ci~~~~~~s~~CP~Cr~~t~gvfn~Ak~ 312 (323)
...-+.||||...+..|+.- .=||.-|..|..+ ....||.|+.+...+-+.|.+
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~---~~~~CP~Cr~~~g~~R~~amE 99 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK---VSNKCPTCRLPIGNIRCRAME 99 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhhh---hcccCCccccccccHHHHHHH
Confidence 33446899999999988643 3489999999875 357899999998866544443
No 77
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=92.36 E-value=0.067 Score=31.36 Aligned_cols=18 Identities=44% Similarity=0.881 Sum_probs=14.8
Q ss_pred CccccccccccCCCCccceee
Q 020671 189 ICKDYKETGYCGYGDSCKFMH 209 (323)
Q Consensus 189 iCKdYkeTG~CgfGDsCkFlH 209 (323)
+||.+.. |.+|++|.|+|
T Consensus 1 ~Ck~~~~---C~~~~~C~f~H 18 (19)
T PF14608_consen 1 PCKFGPN---CTNGDNCPFSH 18 (19)
T ss_pred CCcCcCC---CCCCCcCccCC
Confidence 4775544 99999999999
No 78
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.15 E-value=0.078 Score=53.26 Aligned_cols=44 Identities=18% Similarity=0.393 Sum_probs=33.9
Q ss_pred CccccccccCC---CCcEEccCCCcccHHHHHHhcc---CCCCCCCCCCC
Q 020671 259 PFACFICRKPF---VDPVVTKCKHYFCEHCALKHHS---KNKKCFVCNEP 302 (323)
Q Consensus 259 p~~C~IC~e~~---~~PVvt~CGH~FC~~Ci~~~~~---~s~~CP~Cr~~ 302 (323)
-|.|||=++.- ..|+.+.|||+.|..-+.+..+ .+.+||.|...
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 46888855543 4578999999999999988776 34899999443
No 79
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=92.04 E-value=0.032 Score=42.95 Aligned_cols=45 Identities=29% Similarity=0.558 Sum_probs=22.5
Q ss_pred ccccccccCCC-C---cEE----ccCCCcccHHHHHHhcc---CC--------CCCCCCCCCCC
Q 020671 260 FACFICRKPFV-D---PVV----TKCKHYFCEHCALKHHS---KN--------KKCFVCNEPTL 304 (323)
Q Consensus 260 ~~C~IC~e~~~-~---PVv----t~CGH~FC~~Ci~~~~~---~s--------~~CP~Cr~~t~ 304 (323)
..|.||...+. . |++ ..|++.|-..|+.+|+. .. ..||.|+.+..
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 46999998764 2 332 37899999999999987 11 35999988653
No 80
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=92.02 E-value=0.11 Score=50.41 Aligned_cols=42 Identities=29% Similarity=0.661 Sum_probs=34.1
Q ss_pred cccccccCC-CCcE----EccCCCcccHHHHHHhcc-CCCCCCCCCCC
Q 020671 261 ACFICRKPF-VDPV----VTKCKHYFCEHCALKHHS-KNKKCFVCNEP 302 (323)
Q Consensus 261 ~C~IC~e~~-~~PV----vt~CGH~FC~~Ci~~~~~-~s~~CP~Cr~~ 302 (323)
.|++|.... .+|- +-+|+|..|++|.-..+. ....||.|...
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~i 49 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVI 49 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccch
Confidence 599998654 5662 338999999999998887 77899999774
No 81
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=91.52 E-value=0.034 Score=54.22 Aligned_cols=45 Identities=33% Similarity=0.645 Sum_probs=35.1
Q ss_pred ccccccccCCCC-c--EEccCCCcccHHHHHHhcc-----------------------CCCCCCCCCCCCC
Q 020671 260 FACFICRKPFVD-P--VVTKCKHYFCEHCALKHHS-----------------------KNKKCFVCNEPTL 304 (323)
Q Consensus 260 ~~C~IC~e~~~~-P--Vvt~CGH~FC~~Ci~~~~~-----------------------~s~~CP~Cr~~t~ 304 (323)
..|.||+--|.+ | ++|.|.|||-..|+-+++. ....||+|+....
T Consensus 116 gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 116 GQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 479999988853 3 5889999999999988765 2356999998543
No 82
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=91.35 E-value=0.07 Score=58.76 Aligned_cols=44 Identities=25% Similarity=0.585 Sum_probs=35.2
Q ss_pred cccccccCCC-----CcE--EccCCCcccHHHHHHhcc--CCCCCCCCCCCCC
Q 020671 261 ACFICRKPFV-----DPV--VTKCKHYFCEHCALKHHS--KNKKCFVCNEPTL 304 (323)
Q Consensus 261 ~C~IC~e~~~-----~PV--vt~CGH~FC~~Ci~~~~~--~s~~CP~Cr~~t~ 304 (323)
+|+||...+. -|. ...|.|-|.-.|+.+|++ ....||+||....
T Consensus 1471 ECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1471 ECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 7999998763 232 346999999999999998 6789999997653
No 83
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=91.09 E-value=0.097 Score=37.95 Aligned_cols=42 Identities=29% Similarity=0.801 Sum_probs=25.4
Q ss_pred ccccccccCCCCcEEccCC-CcccHHHHHHhccCCCCCCCCCCCC
Q 020671 260 FACFICRKPFVDPVVTKCK-HYFCEHCALKHHSKNKKCFVCNEPT 303 (323)
Q Consensus 260 ~~C~IC~e~~~~PVvt~CG-H~FC~~Ci~~~~~~s~~CP~Cr~~t 303 (323)
+-|.-|--. +.-+..|. ||.|..|+...+..+..||+|..+.
T Consensus 3 ~nCKsCWf~--~k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~L 45 (50)
T PF03854_consen 3 YNCKSCWFA--NKGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPL 45 (50)
T ss_dssp ----SS-S----SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE-
T ss_pred ccChhhhhc--CCCeeeecchhHHHHHHHHHhccccCCCcccCcC
Confidence 345555433 33456674 9999999999999999999998764
No 84
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.41 E-value=0.34 Score=46.37 Aligned_cols=49 Identities=20% Similarity=0.388 Sum_probs=37.4
Q ss_pred CCCCCCCCccccccccC----CCCcEEccCCCcccHHHHHHhccCCCCCCCCCCC
Q 020671 252 DDDEDSLPFACFICRKP----FVDPVVTKCKHYFCEHCALKHHSKNKKCFVCNEP 302 (323)
Q Consensus 252 ~ddee~~p~~C~IC~e~----~~~PVvt~CGH~FC~~Ci~~~~~~s~~CP~Cr~~ 302 (323)
.+|....+|.|+|-.-. ++.-.+-.|||+|-+.-+.+.- ...|++|++.
T Consensus 104 ~~D~~~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~ 156 (293)
T KOG3113|consen 104 HDDTQRARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAA 156 (293)
T ss_pred ccccccceeecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCc
Confidence 44556778999986543 3445677999999999887764 6899999985
No 85
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.39 E-value=0.1 Score=51.78 Aligned_cols=25 Identities=44% Similarity=1.046 Sum_probs=22.7
Q ss_pred CCccccccccccCCCCccceeecccc
Q 020671 188 DICKDYKETGYCGYGDSCKFMHDRGD 213 (323)
Q Consensus 188 DiCKdYkeTG~CgfGDsCkFlHdR~d 213 (323)
-|||+|.. |+|+||+-|.|.|++.+
T Consensus 9 tic~~~~~-g~c~~g~~cr~~h~~~~ 33 (344)
T KOG1039|consen 9 TICKYYQK-GNCKFGDLCRLSHSLPD 33 (344)
T ss_pred hhhhhccc-ccccccceeeeeccCch
Confidence 79998877 99999999999999883
No 86
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.91 E-value=0.15 Score=47.25 Aligned_cols=38 Identities=24% Similarity=0.714 Sum_probs=31.6
Q ss_pred cccccccCCCCcEEccCCCc-ccHHHHHHhccCCCCCCCCCCC
Q 020671 261 ACFICRKPFVDPVVTKCKHY-FCEHCALKHHSKNKKCFVCNEP 302 (323)
Q Consensus 261 ~C~IC~e~~~~PVvt~CGH~-FC~~Ci~~~~~~s~~CP~Cr~~ 302 (323)
.|.+|.+.-..-+++||.|. +|..|-.. ...||+|+.+
T Consensus 160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~ 198 (207)
T KOG1100|consen 160 SCRKCGEREATVLLLPCRHLCLCGICDES----LRICPICRSP 198 (207)
T ss_pred cceecCcCCceEEeecccceEeccccccc----CccCCCCcCh
Confidence 39999998888778899996 89999864 3569999875
No 87
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.52 E-value=0.19 Score=48.03 Aligned_cols=30 Identities=27% Similarity=0.389 Sum_probs=28.3
Q ss_pred cccccccCCCCcEEccCCCcccHHHHHHhc
Q 020671 261 ACFICRKPFVDPVVTKCKHYFCEHCALKHH 290 (323)
Q Consensus 261 ~C~IC~e~~~~PVvt~CGH~FC~~Ci~~~~ 290 (323)
.|.+|++++.+||+++=||.||..||++++
T Consensus 45 cCsLtLqPc~dPvit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 45 CCSLTLQPCRDPVITPDGYLFDREAILEYI 74 (303)
T ss_pred eeeeecccccCCccCCCCeeeeHHHHHHHH
Confidence 689999999999999999999999999865
No 88
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=89.32 E-value=0.13 Score=58.12 Aligned_cols=45 Identities=24% Similarity=0.508 Sum_probs=40.7
Q ss_pred CCCccccccccCCC-CcEEccCCCcccHHHHHHhccCCCCCCCCCC
Q 020671 257 SLPFACFICRKPFV-DPVVTKCKHYFCEHCALKHHSKNKKCFVCNE 301 (323)
Q Consensus 257 ~~p~~C~IC~e~~~-~PVvt~CGH~FC~~Ci~~~~~~s~~CP~Cr~ 301 (323)
..++.|.||++.+. ...++.|||.+|..|...|......||+|..
T Consensus 1151 ~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred hcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhh
Confidence 55779999999998 6678899999999999999999999999975
No 89
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=89.23 E-value=0.19 Score=42.01 Aligned_cols=27 Identities=26% Similarity=0.509 Sum_probs=25.3
Q ss_pred cCCCcccHHHHHHhccCCCCCCCCCCC
Q 020671 276 KCKHYFCEHCALKHHSKNKKCFVCNEP 302 (323)
Q Consensus 276 ~CGH~FC~~Ci~~~~~~s~~CP~Cr~~ 302 (323)
.|.|.|-..||.+|++....||+|.+.
T Consensus 80 ~CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 699999999999999999999999875
No 90
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=88.95 E-value=0.16 Score=51.38 Aligned_cols=23 Identities=39% Similarity=0.999 Sum_probs=20.2
Q ss_pred CCccccccccccCCCCccceeecc
Q 020671 188 DICKDYKETGYCGYGDSCKFMHDR 211 (323)
Q Consensus 188 DiCKdYkeTG~CgfGDsCkFlHdR 211 (323)
-+|+.|-+ |-|+||.+|+|.|+-
T Consensus 141 kpC~ffLe-g~CRF~enCRfSHG~ 163 (486)
T KOG2185|consen 141 KPCKFFLE-GRCRFGENCRFSHGL 163 (486)
T ss_pred ccchHhhc-cccccCcccccccCc
Confidence 35998888 899999999999974
No 91
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=88.67 E-value=0.37 Score=34.94 Aligned_cols=41 Identities=22% Similarity=0.619 Sum_probs=20.9
Q ss_pred ccccccCCCC--cEEc--cCCCcccHHHHHHhcc-CCCCCCCCCCC
Q 020671 262 CFICRKPFVD--PVVT--KCKHYFCEHCALKHHS-KNKKCFVCNEP 302 (323)
Q Consensus 262 C~IC~e~~~~--PVvt--~CGH~FC~~Ci~~~~~-~s~~CP~Cr~~ 302 (323)
|++|.+.+.. --+. +||+-+|..|...... ....||.||.+
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREP 46 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCC
Confidence 6778777621 1223 6788899999998886 68999999976
No 92
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=88.61 E-value=0.12 Score=55.34 Aligned_cols=43 Identities=30% Similarity=0.703 Sum_probs=37.1
Q ss_pred CccccccccCCCCcEEccCCCcccHHHHHHhcc---CCCCCCCCCC
Q 020671 259 PFACFICRKPFVDPVVTKCKHYFCEHCALKHHS---KNKKCFVCNE 301 (323)
Q Consensus 259 p~~C~IC~e~~~~PVvt~CGH~FC~~Ci~~~~~---~s~~CP~Cr~ 301 (323)
.+.|+||...+..|+.+.|.|.||..|+...+. ....||+|+.
T Consensus 21 ~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~ 66 (684)
T KOG4362|consen 21 ILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKS 66 (684)
T ss_pred hccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhh
Confidence 347999999999999999999999999987765 3578999974
No 93
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=88.45 E-value=0.31 Score=35.19 Aligned_cols=44 Identities=30% Similarity=0.597 Sum_probs=22.2
Q ss_pred CccccccccCCCCcEEc-cCCCcccHH--HHHHhcc--CCCCCCCCCCC
Q 020671 259 PFACFICRKPFVDPVVT-KCKHYFCEH--CALKHHS--KNKKCFVCNEP 302 (323)
Q Consensus 259 p~~C~IC~e~~~~PVvt-~CGH~FC~~--Ci~~~~~--~s~~CP~Cr~~ 302 (323)
.+.|+|....+..|+.. .|.|.-|.+ -++.... ....||+|+++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 46899999999999965 799986543 2333322 55789999864
No 94
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=88.37 E-value=0.55 Score=42.01 Aligned_cols=57 Identities=21% Similarity=0.480 Sum_probs=39.1
Q ss_pred ccccccccCCCCcEEccCC-------Cccc------HHHHHHhcc-------------------------------CCCC
Q 020671 260 FACFICRKPFVDPVVTKCK-------HYFC------EHCALKHHS-------------------------------KNKK 295 (323)
Q Consensus 260 ~~C~IC~e~~~~PVvt~CG-------H~FC------~~Ci~~~~~-------------------------------~s~~ 295 (323)
..|+||++.+.|.|++-|. .|.| ..|+.++.+ ....
T Consensus 3 ~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 82 (162)
T PF07800_consen 3 VTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPELA 82 (162)
T ss_pred ccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccccccc
Confidence 4799999999999987653 2334 357666543 1357
Q ss_pred CCCCCCCCCCchhhHHHHHHHH
Q 020671 296 CFVCNEPTLGIFNTALEIRKRM 317 (323)
Q Consensus 296 CP~Cr~~t~gvfn~Ak~L~~kL 317 (323)
||+||-.+.|-+.+.. .+..|
T Consensus 83 CPLCRG~V~GWtvve~-AR~~L 103 (162)
T PF07800_consen 83 CPLCRGEVKGWTVVEP-ARRFL 103 (162)
T ss_pred CccccCceeceEEchH-HHHHh
Confidence 9999999888765543 44444
No 95
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=88.24 E-value=0.42 Score=46.23 Aligned_cols=46 Identities=30% Similarity=0.657 Sum_probs=37.9
Q ss_pred CCCCccccccccCC----CCcEEccCCCcccHHHHHHhccCCCCCCCCCC
Q 020671 256 DSLPFACFICRKPF----VDPVVTKCKHYFCEHCALKHHSKNKKCFVCNE 301 (323)
Q Consensus 256 e~~p~~C~IC~e~~----~~PVvt~CGH~FC~~Ci~~~~~~s~~CP~Cr~ 301 (323)
...++-||||.+.+ ..|.+++|||+.-..|+.........||+|.+
T Consensus 155 ~~~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 155 RSSEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred hcccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 34455699999876 45678899999889999988876799999988
No 96
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.03 E-value=0.38 Score=52.58 Aligned_cols=46 Identities=28% Similarity=0.611 Sum_probs=39.0
Q ss_pred cccccccCCCCcEE-ccCCCcccHHHHHHhccCCCCCCCCCCCCCCchhh
Q 020671 261 ACFICRKPFVDPVV-TKCKHYFCEHCALKHHSKNKKCFVCNEPTLGIFNT 309 (323)
Q Consensus 261 ~C~IC~e~~~~PVv-t~CGH~FC~~Ci~~~~~~s~~CP~Cr~~t~gvfn~ 309 (323)
.|..|...+.-|+| ..|||.|-..|+. .+...||.|.....+++.+
T Consensus 842 kCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~~~~m~l 888 (933)
T KOG2114|consen 842 KCSACEGTLDLPFVHFLCGHSYHQHCLE---DKEDKCPKCLPELRGVMDL 888 (933)
T ss_pred eecccCCccccceeeeecccHHHHHhhc---cCcccCCccchhhhhhHHH
Confidence 89999999999976 4999999999998 5678999998866665544
No 97
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=88.02 E-value=0.43 Score=47.51 Aligned_cols=52 Identities=19% Similarity=0.424 Sum_probs=33.8
Q ss_pred ccccccCCCC--c--EEccCCCcccHHHHHHhcc-CCCCCCCCCCC-----CCCchhhHHHH
Q 020671 262 CFICRKPFVD--P--VVTKCKHYFCEHCALKHHS-KNKKCFVCNEP-----TLGIFNTALEI 313 (323)
Q Consensus 262 C~IC~e~~~~--P--Vvt~CGH~FC~~Ci~~~~~-~s~~CP~Cr~~-----t~gvfn~Ak~L 313 (323)
|++|++.+.. . .--+||-..|.-|+-.... -+.+||.||.. +..+.-.+.++
T Consensus 17 cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv~~~~~s~ee~ 78 (480)
T COG5175 17 CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENVRYVTLSPEEL 78 (480)
T ss_pred CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccceeEEecCHHHH
Confidence 9999998632 1 2246787777777765544 46799999873 33444455554
No 98
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=87.59 E-value=0.15 Score=51.49 Aligned_cols=46 Identities=17% Similarity=0.459 Sum_probs=37.0
Q ss_pred CCCCccccccccCCC-Cc---EEccCCCcccHHHHHHhcc--CCCCCCCCCC
Q 020671 256 DSLPFACFICRKPFV-DP---VVTKCKHYFCEHCALKHHS--KNKKCFVCNE 301 (323)
Q Consensus 256 e~~p~~C~IC~e~~~-~P---Vvt~CGH~FC~~Ci~~~~~--~s~~CP~Cr~ 301 (323)
++..+-|..|.+.+- .| -.++|.|.|-..|+.+++. ....||.||+
T Consensus 362 ~e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 362 EETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HHHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 445678999999872 22 3679999999999998876 5789999993
No 99
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=87.09 E-value=0.18 Score=47.99 Aligned_cols=43 Identities=26% Similarity=0.695 Sum_probs=33.2
Q ss_pred CccccccccC-CCCcE-----EccCCCcccHHHHHHhcc-CCCCCC--CCCC
Q 020671 259 PFACFICRKP-FVDPV-----VTKCKHYFCEHCALKHHS-KNKKCF--VCNE 301 (323)
Q Consensus 259 p~~C~IC~e~-~~~PV-----vt~CGH~FC~~Ci~~~~~-~s~~CP--~Cr~ 301 (323)
.-.||||... +-+|- ...|-|..|++|..+.+. +...|| -|++
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 3479999865 45662 235999999999999987 667898 7765
No 100
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=85.65 E-value=0.26 Score=46.94 Aligned_cols=41 Identities=29% Similarity=0.674 Sum_probs=29.8
Q ss_pred CCCcccCceeecceeeccCCCCccccccccccCCC---------Cccceeec
Q 020671 168 HGPLRASAHIRVTARFDYQPDICKDYKETGYCGYG---------DSCKFMHD 210 (323)
Q Consensus 168 ~gP~ra~~nir~t~~~DyqPDiCKdYkeTG~CgfG---------DsCkFlHd 210 (323)
.|+-|...+-+.++.|+ -|||||.|-- |||.+- ..|..+|+
T Consensus 12 MG~~Rn~~~~~~~~~f~-D~~VCk~~L~-g~CPhdLF~nTK~DLG~C~kiHd 61 (254)
T PF03194_consen 12 MGSNRNGDPSKRKVHFT-DPDVCKYFLV-GFCPHDLFVNTKSDLGPCPKIHD 61 (254)
T ss_pred cCCccCCCccccCCCCC-CcccCHHHHh-CCCcHHHHhhcccccchhhhhcC
Confidence 56666554444445664 4999998876 999985 58999997
No 101
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=85.04 E-value=0.61 Score=40.68 Aligned_cols=47 Identities=19% Similarity=0.433 Sum_probs=38.2
Q ss_pred CCccccccccCCCCcEEc----cCCCcccHHHHHHhcc---CCCCCCCCCCCCC
Q 020671 258 LPFACFICRKPFVDPVVT----KCKHYFCEHCALKHHS---KNKKCFVCNEPTL 304 (323)
Q Consensus 258 ~p~~C~IC~e~~~~PVvt----~CGH~FC~~Ci~~~~~---~s~~CP~Cr~~t~ 304 (323)
.-++|.||.+...+...+ -||-..|..|-...|+ -.+.||+|..++.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFK 132 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFK 132 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccc
Confidence 457999999998777654 4898899999988887 5689999987654
No 102
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.27 E-value=0.36 Score=51.44 Aligned_cols=39 Identities=31% Similarity=0.738 Sum_probs=31.6
Q ss_pred ccccccccCC----CCcEEccCCCcccHHHHHHhccCCCCCCCCCC
Q 020671 260 FACFICRKPF----VDPVVTKCKHYFCEHCALKHHSKNKKCFVCNE 301 (323)
Q Consensus 260 ~~C~IC~e~~----~~PVvt~CGH~FC~~Ci~~~~~~s~~CP~Cr~ 301 (323)
+.|+||...| ..|+.+.|||+.|..|+...+. ..|| |..
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn--~scp-~~~ 54 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN--ASCP-TKR 54 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh--ccCC-CCc
Confidence 3789997776 5689999999999999998876 5677 433
No 103
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=84.19 E-value=0.55 Score=46.32 Aligned_cols=41 Identities=22% Similarity=0.435 Sum_probs=31.5
Q ss_pred ccccccccCC---CCcEEccCCCcccHHHHHHhcc---CCCCCCCCC
Q 020671 260 FACFICRKPF---VDPVVTKCKHYFCEHCALKHHS---KNKKCFVCN 300 (323)
Q Consensus 260 ~~C~IC~e~~---~~PVvt~CGH~FC~~Ci~~~~~---~s~~CP~Cr 300 (323)
|.||+=.+.- ..|+++.|||+.-..-+.+..+ .+++||.|.
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 5788755443 4578999999999988877665 468999993
No 104
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=83.27 E-value=0.46 Score=37.86 Aligned_cols=28 Identities=32% Similarity=0.662 Sum_probs=23.6
Q ss_pred ccccccccCCCCcE--EccCCCcccHHHHH
Q 020671 260 FACFICRKPFVDPV--VTKCKHYFCEHCAL 287 (323)
Q Consensus 260 ~~C~IC~e~~~~PV--vt~CGH~FC~~Ci~ 287 (323)
-.|.+|.+.+.+++ +.+|||.|...|+.
T Consensus 79 ~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 79 TKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 36999999998764 56999999999975
No 105
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=82.51 E-value=0.8 Score=37.35 Aligned_cols=35 Identities=31% Similarity=0.833 Sum_probs=29.2
Q ss_pred cccccccCCCCcEEccCCCcccHHHHHHhccCCCCCCCCCCCCC
Q 020671 261 ACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCNEPTL 304 (323)
Q Consensus 261 ~C~IC~e~~~~PVvt~CGH~FC~~Ci~~~~~~s~~CP~Cr~~t~ 304 (323)
.|.||...+..+ ||.||..|+.+ .-.|.+|++...
T Consensus 46 ~C~~CK~~v~q~-----g~~YCq~CAYk----kGiCamCGKki~ 80 (90)
T PF10235_consen 46 KCKICKTKVHQP-----GAKYCQTCAYK----KGICAMCGKKIL 80 (90)
T ss_pred cccccccccccC-----CCccChhhhcc----cCcccccCCeec
Confidence 799999987766 89999999874 468999998753
No 106
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=81.58 E-value=3.8 Score=40.61 Aligned_cols=48 Identities=25% Similarity=0.575 Sum_probs=38.0
Q ss_pred CCCccccccccCCC--Cc--EEccCCCcccHHHHHHhccCCCCCCCCCCCCC
Q 020671 257 SLPFACFICRKPFV--DP--VVTKCKHYFCEHCALKHHSKNKKCFVCNEPTL 304 (323)
Q Consensus 257 ~~p~~C~IC~e~~~--~P--Vvt~CGH~FC~~Ci~~~~~~s~~CP~Cr~~t~ 304 (323)
.+|-.|+||.++.. +- +-.+|++..|+.|+.........||.|+++..
T Consensus 247 ~v~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 247 SVPPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred ccCCCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccc
Confidence 56679999999762 11 23478888999999999889999999997644
No 107
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.02 E-value=0.67 Score=45.13 Aligned_cols=53 Identities=25% Similarity=0.573 Sum_probs=40.3
Q ss_pred CCCCCccccccccCCCCcEEccC----CCcccHHHHHHhcc-----------CCCCCCCCCCCCCCch
Q 020671 255 EDSLPFACFICRKPFVDPVVTKC----KHYFCEHCALKHHS-----------KNKKCFVCNEPTLGIF 307 (323)
Q Consensus 255 ee~~p~~C~IC~e~~~~PVvt~C----GH~FC~~Ci~~~~~-----------~s~~CP~Cr~~t~gvf 307 (323)
...-++.|.+|.+.+.+--...| .|-||..|-++.++ .--+||+-+....--|
T Consensus 264 A~~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPSGdkCPLvgS~vPWAF 331 (352)
T KOG3579|consen 264 APSAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPSGDKCPLVGSNVPWAF 331 (352)
T ss_pred CCCCceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCCCCcCcccCCcccHHH
Confidence 34668999999999988877777 58899999998876 2357787766544333
No 108
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=80.94 E-value=0.65 Score=44.87 Aligned_cols=28 Identities=32% Similarity=1.102 Sum_probs=24.1
Q ss_pred cCCCCccccccccccCC-CCccceeeccc
Q 020671 185 YQPDICKDYKETGYCGY-GDSCKFMHDRG 212 (323)
Q Consensus 185 yqPDiCKdYkeTG~Cgf-GDsCkFlHdR~ 212 (323)
|.=.+|..|.++|.|.| |++|+|-|...
T Consensus 130 ~kt~lc~~~~~~g~c~y~ge~crfah~~~ 158 (332)
T KOG1677|consen 130 YKTPLCRSFRKSGTCKYRGEQCRFAHGLE 158 (332)
T ss_pred ccCCcceeeecCccccccCchhhhcCCcc
Confidence 44567999999999999 99999988655
No 109
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=79.53 E-value=2.1 Score=35.59 Aligned_cols=42 Identities=29% Similarity=0.626 Sum_probs=28.9
Q ss_pred ccccccccCCCCcEE--------ccC---CCcccHHHHHHhcc---------CCCCCCCCCC
Q 020671 260 FACFICRKPFVDPVV--------TKC---KHYFCEHCALKHHS---------KNKKCFVCNE 301 (323)
Q Consensus 260 ~~C~IC~e~~~~PVv--------t~C---GH~FC~~Ci~~~~~---------~s~~CP~Cr~ 301 (323)
..|..|+..-.+..+ ..| .-.||..|+..++. ....||.|+-
T Consensus 8 ~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 8 KTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 357777775443321 345 55799999998886 4578999976
No 110
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=78.19 E-value=2.7 Score=29.44 Aligned_cols=38 Identities=21% Similarity=0.493 Sum_probs=22.0
Q ss_pred ccccccCCCCcEEc---cCCCcccHHHHHHhccCC--CCCCCC
Q 020671 262 CFICRKPFVDPVVT---KCKHYFCEHCALKHHSKN--KKCFVC 299 (323)
Q Consensus 262 C~IC~e~~~~PVvt---~CGH~FC~~Ci~~~~~~s--~~CP~C 299 (323)
|.+|.+++...+.= .|+-.+-..|+..+++.. ..||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 67888888777653 488778889999998843 379987
No 111
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.07 E-value=2.3 Score=42.87 Aligned_cols=43 Identities=28% Similarity=0.460 Sum_probs=30.7
Q ss_pred CCCccccccccCCCCc----EEccCCCcccHHHHHHhcc------CCCCCCCC
Q 020671 257 SLPFACFICRKPFVDP----VVTKCKHYFCEHCALKHHS------KNKKCFVC 299 (323)
Q Consensus 257 ~~p~~C~IC~e~~~~P----Vvt~CGH~FC~~Ci~~~~~------~s~~CP~C 299 (323)
.....|.||......+ .+..|+|.||..|+.++.. ....||.=
T Consensus 144 ~~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~ 196 (384)
T KOG1812|consen 144 LPKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHD 196 (384)
T ss_pred cccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCC
Confidence 3456899999333222 2678999999999999886 34667543
No 112
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=71.06 E-value=4.3 Score=36.42 Aligned_cols=44 Identities=30% Similarity=0.690 Sum_probs=32.9
Q ss_pred CccccccccCCCCcEEccCCC-----cccHHHHHHhcc--CCCCCCCCCCCC
Q 020671 259 PFACFICRKPFVDPVVTKCKH-----YFCEHCALKHHS--KNKKCFVCNEPT 303 (323)
Q Consensus 259 p~~C~IC~e~~~~PVvt~CGH-----~FC~~Ci~~~~~--~s~~CP~Cr~~t 303 (323)
+..|-||++... +...+|.. +.-..|+.+|.. ....|++|+.+.
T Consensus 8 ~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y 58 (162)
T PHA02825 8 DKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPY 58 (162)
T ss_pred CCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeE
Confidence 347999998854 44456653 347899999987 678999998863
No 113
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=70.78 E-value=3.1 Score=41.22 Aligned_cols=47 Identities=6% Similarity=-0.043 Sum_probs=38.7
Q ss_pred CCccccccccCCCCcEEccCCCc-ccHHHHHHhccCCCCCCCCCCCCCCc
Q 020671 258 LPFACFICRKPFVDPVVTKCKHY-FCEHCALKHHSKNKKCFVCNEPTLGI 306 (323)
Q Consensus 258 ~p~~C~IC~e~~~~PVvt~CGH~-FC~~Ci~~~~~~s~~CP~Cr~~t~gv 306 (323)
..++|..|..-+..-+..+|+|. ||..|+. ..-+..||+|....+..
T Consensus 342 s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~~~~ 389 (394)
T KOG2113|consen 342 SSLKGTSAGFGLLSTIWSGGNMNLSPGSLAS--ASASPTSSTCDHNDHTL 389 (394)
T ss_pred hhcccccccCceeeeEeecCCcccChhhhhh--cccCCccccccccceee
Confidence 35689999999988889999996 9999998 45678999998765443
No 114
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.58 E-value=1.9 Score=47.48 Aligned_cols=31 Identities=32% Similarity=0.840 Sum_probs=25.9
Q ss_pred cccccccCCC-Cc-EEccCCCcccHHHHHHhcc
Q 020671 261 ACFICRKPFV-DP-VVTKCKHYFCEHCALKHHS 291 (323)
Q Consensus 261 ~C~IC~e~~~-~P-Vvt~CGH~FC~~Ci~~~~~ 291 (323)
.|.+|..++. .| ++.+|||.|-+.|+.++..
T Consensus 819 ~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 819 SCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred chHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 6999999874 45 5779999999999998754
No 115
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.29 E-value=2.6 Score=42.94 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=29.6
Q ss_pred CCCccccccccCCCC-cEEccCCCcccHHHHHHhcc
Q 020671 257 SLPFACFICRKPFVD-PVVTKCKHYFCEHCALKHHS 291 (323)
Q Consensus 257 ~~p~~C~IC~e~~~~-PVvt~CGH~FC~~Ci~~~~~ 291 (323)
.....|.||...+.. .+...|||.||..|+..++.
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~ 103 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLG 103 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhh
Confidence 445789999999885 56679999999999999876
No 116
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=69.93 E-value=3.6 Score=45.12 Aligned_cols=42 Identities=19% Similarity=0.390 Sum_probs=29.4
Q ss_pred cccccccCCCCc-------EEccCCCcccHHHHHHhcc------CCCCCCCCCCC
Q 020671 261 ACFICRKPFVDP-------VVTKCKHYFCEHCALKHHS------KNKKCFVCNEP 302 (323)
Q Consensus 261 ~C~IC~e~~~~P-------Vvt~CGH~FC~~Ci~~~~~------~s~~CP~Cr~~ 302 (323)
.|.||..-+.+| ++-.|+|.||..||+.|.. ..-.|++|..-
T Consensus 98 Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~C 152 (1134)
T KOG0825|consen 98 TSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEEC 152 (1134)
T ss_pred ccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHH
Confidence 555655555443 3456999999999999986 44567888653
No 117
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=69.79 E-value=1.9 Score=37.58 Aligned_cols=33 Identities=21% Similarity=0.491 Sum_probs=25.5
Q ss_pred CccccccccCCCC--cE-EccCC------CcccHHHHHHhcc
Q 020671 259 PFACFICRKPFVD--PV-VTKCK------HYFCEHCALKHHS 291 (323)
Q Consensus 259 p~~C~IC~e~~~~--PV-vt~CG------H~FC~~Ci~~~~~ 291 (323)
..+|.||.+.+.+ .| ...|| |.||..|+.+|.+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 4589999999976 54 34554 6799999999943
No 118
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=69.48 E-value=5.1 Score=28.88 Aligned_cols=37 Identities=38% Similarity=0.801 Sum_probs=25.3
Q ss_pred CccccccccCCCCcEEccCCCcccHHHHHHhcc--CCCCCCCCCCC
Q 020671 259 PFACFICRKPFVDPVVTKCKHYFCEHCALKHHS--KNKKCFVCNEP 302 (323)
Q Consensus 259 p~~C~IC~e~~~~PVvt~CGH~FC~~Ci~~~~~--~s~~CP~Cr~~ 302 (323)
.|.||.|.+.+.. ..++..|...+.. ....||+|...
T Consensus 2 ~f~CP~C~~~~~~-------~~L~~H~~~~H~~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 2 SFTCPYCGKGFSE-------SSLVEHCEDEHRSESKNVVCPICSSR 40 (54)
T ss_pred CcCCCCCCCccCH-------HHHHHHHHhHCcCCCCCccCCCchhh
Confidence 4789999994332 2355666666664 46789999763
No 119
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=67.99 E-value=1.6 Score=42.73 Aligned_cols=30 Identities=40% Similarity=0.812 Sum_probs=24.0
Q ss_pred eeccCCCCccccccccccCCCCccceeeccc
Q 020671 182 RFDYQPDICKDYKETGYCGYGDSCKFMHDRG 212 (323)
Q Consensus 182 ~~DyqPDiCKdYkeTG~CgfGDsCkFlHdR~ 212 (323)
-+|=..=+|-.|++ |.|.=|+-|+|+||..
T Consensus 87 gvDPKSvvCafFk~-g~C~KG~kCKFsHdl~ 116 (343)
T KOG1763|consen 87 GVDPKSVVCAFFKQ-GTCTKGDKCKFSHDLA 116 (343)
T ss_pred CCCchHHHHHHHhc-cCCCCCCcccccchHH
Confidence 34555568988887 9999999999999843
No 120
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=66.85 E-value=3 Score=40.04 Aligned_cols=65 Identities=20% Similarity=0.423 Sum_probs=46.4
Q ss_pred CCCCccccccccCCCCcEEc-cCCCcccHHHHHHhccC--CCCCCCCCCC--CC---CchhhHHHHHHHHHHh
Q 020671 256 DSLPFACFICRKPFVDPVVT-KCKHYFCEHCALKHHSK--NKKCFVCNEP--TL---GIFNTALEIRKRMAEE 320 (323)
Q Consensus 256 e~~p~~C~IC~e~~~~PVvt-~CGH~FC~~Ci~~~~~~--s~~CP~Cr~~--t~---gvfn~Ak~L~~kLk~~ 320 (323)
+...+.|||=..++.+|++. .|||+|=..-+...... ...||+=+.+ +. ++...-.+|..++++.
T Consensus 173 e~fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~~~~~~~~~~l~~d~el~~kIr~~ 245 (262)
T KOG2979|consen 173 EVFSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCENPYYIQPGHLDEDKELQQKIRQS 245 (262)
T ss_pred hhhcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCCccccccccccCchHHHHHHHHHh
Confidence 34577999999999999865 89999999999988874 7789886665 22 2222333466666543
No 121
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=64.16 E-value=2.3 Score=44.43 Aligned_cols=15 Identities=40% Similarity=1.236 Sum_probs=7.4
Q ss_pred ccccccCCCCcccee
Q 020671 194 KETGYCGYGDSCKFM 208 (323)
Q Consensus 194 keTG~CgfGDsCkFl 208 (323)
-.-|+|.||-+|+|+
T Consensus 121 ~s~G~Cp~G~~CRFl 135 (614)
T KOG2333|consen 121 ESLGFCPYGFKCRFL 135 (614)
T ss_pred eccccCCccceeehh
Confidence 333455555555554
No 122
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=63.74 E-value=1.9 Score=41.40 Aligned_cols=49 Identities=20% Similarity=0.311 Sum_probs=24.1
Q ss_pred CCCccccccccCCCCcEEccC---C--CcccHHHHHHhccCCCCCCCCCCCCCC
Q 020671 257 SLPFACFICRKPFVDPVVTKC---K--HYFCEHCALKHHSKNKKCFVCNEPTLG 305 (323)
Q Consensus 257 ~~p~~C~IC~e~~~~PVvt~C---G--H~FC~~Ci~~~~~~s~~CP~Cr~~t~g 305 (323)
+..-.||||.....-.++..= | |.+|.-|-..|.-....||.|+.....
T Consensus 170 w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~~~~ 223 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNTDHE 223 (290)
T ss_dssp TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---SS-
T ss_pred ccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCCCCc
Confidence 344689999998654444432 3 568999999999888899999886443
No 123
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=63.42 E-value=2.3 Score=41.91 Aligned_cols=41 Identities=34% Similarity=0.758 Sum_probs=29.6
Q ss_pred CCCcccCceeecceeeccCCCCccccccccccCCC---------Cccceeec
Q 020671 168 HGPLRASAHIRVTARFDYQPDICKDYKETGYCGYG---------DSCKFMHD 210 (323)
Q Consensus 168 ~gP~ra~~nir~t~~~DyqPDiCKdYkeTG~CgfG---------DsCkFlHd 210 (323)
.||-|.+--=+..+.||= ||||++|-- |||.+- ..|.-+|+
T Consensus 13 MGs~r~~~~~~~~v~~~D-~~VC~~fLv-g~CPHDlF~nTk~dlg~C~kvHd 62 (319)
T KOG0796|consen 13 MGSNRDGDETRQRVKFDD-PDVCKSFLV-GFCPHDLFQNTKMDLGPCPKVHD 62 (319)
T ss_pred hCCCcCCCcccCCCCCCc-hhHHHHHHh-CCCcHHHhhhhhcccCcccchhh
Confidence 455555433344466877 999998877 999874 68988997
No 124
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=62.58 E-value=2.4 Score=41.65 Aligned_cols=44 Identities=30% Similarity=0.533 Sum_probs=33.6
Q ss_pred CccccccccCCCCcEEcc----CC--CcccHHHHHHhccCCCCCCCCCCC
Q 020671 259 PFACFICRKPFVDPVVTK----CK--HYFCEHCALKHHSKNKKCFVCNEP 302 (323)
Q Consensus 259 p~~C~IC~e~~~~PVvt~----CG--H~FC~~Ci~~~~~~s~~CP~Cr~~ 302 (323)
.-.||||.....-.++.. =| +.+|.-|-.+|.-....||.|+..
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 347999999865443322 34 458999999999888999999875
No 125
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=62.53 E-value=3.8 Score=45.21 Aligned_cols=45 Identities=27% Similarity=0.673 Sum_probs=35.8
Q ss_pred CCCccccccccCCC--CcE--EccCCCcccHHHHHHhcc-------CCCCCCCCCC
Q 020671 257 SLPFACFICRKPFV--DPV--VTKCKHYFCEHCALKHHS-------KNKKCFVCNE 301 (323)
Q Consensus 257 ~~p~~C~IC~e~~~--~PV--vt~CGH~FC~~Ci~~~~~-------~s~~CP~Cr~ 301 (323)
...+.|.||.+.+. .|| -..|-|+|-+.||..|-+ ...+||.|..
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 34578999999884 454 246899999999999976 4689999974
No 126
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=61.77 E-value=8.7 Score=28.16 Aligned_cols=25 Identities=36% Similarity=0.828 Sum_probs=15.9
Q ss_pred cCCCcccHHHHHHhccCCCCCCCCC
Q 020671 276 KCKHYFCEHCALKHHSKNKKCFVCN 300 (323)
Q Consensus 276 ~CGH~FC~~Ci~~~~~~s~~CP~Cr 300 (323)
.|++.||..|=.=....--.||-|.
T Consensus 26 ~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp TTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CCCCccccCcChhhhccccCCcCCC
Confidence 6889999999765555678899884
No 127
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=61.51 E-value=2.2 Score=42.21 Aligned_cols=32 Identities=28% Similarity=0.827 Sum_probs=25.7
Q ss_pred ceeecceeeccCCCCccccccccccCCCCc-cceee
Q 020671 175 AHIRVTARFDYQPDICKDYKETGYCGYGDS-CKFMH 209 (323)
Q Consensus 175 ~nir~t~~~DyqPDiCKdYkeTG~CgfGDs-CkFlH 209 (323)
.|||.+ +|- +-+||.||-. |.|..||. |||-|
T Consensus 27 ~~~kd~-~wl-~~eVCReF~r-n~C~R~d~~CkfaH 59 (331)
T KOG2494|consen 27 ENVKDT-KWL-TLEVCREFLR-NTCSRGDRECKFAH 59 (331)
T ss_pred cccccc-chh-HHHHHHHHHh-ccccCCCccccccC
Confidence 578865 664 3789999976 78999998 99988
No 128
>PRK04023 DNA polymerase II large subunit; Validated
Probab=61.01 E-value=5.9 Score=44.65 Aligned_cols=50 Identities=18% Similarity=0.349 Sum_probs=34.0
Q ss_pred CCCccccccccCCCCcEEccCC-----CcccHHHHHHhccCCCCCCCCCCCCCCchh
Q 020671 257 SLPFACFICRKPFVDPVVTKCK-----HYFCEHCALKHHSKNKKCFVCNEPTLGIFN 308 (323)
Q Consensus 257 ~~p~~C~IC~e~~~~PVvt~CG-----H~FC~~Ci~~~~~~s~~CP~Cr~~t~gvfn 308 (323)
.-...|+-|........-..|| .+||..|-. ......||.|+......-.
T Consensus 624 Vg~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~--~~~~y~CPKCG~El~~~s~ 678 (1121)
T PRK04023 624 IGRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCGI--EVEEDECEKCGREPTPYSK 678 (1121)
T ss_pred ccCccCCCCCCcCCcccCCCCCCCCCcceeCccccC--cCCCCcCCCCCCCCCccce
Confidence 3455899999886444455788 469999933 2345679999996554433
No 129
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=58.90 E-value=6.3 Score=46.23 Aligned_cols=45 Identities=20% Similarity=0.479 Sum_probs=34.0
Q ss_pred cccccccCC---CCcEEccCCCcccHHHHHHhcc----------CCCCCCCCCCCCCC
Q 020671 261 ACFICRKPF---VDPVVTKCKHYFCEHCALKHHS----------KNKKCFVCNEPTLG 305 (323)
Q Consensus 261 ~C~IC~e~~---~~PVvt~CGH~FC~~Ci~~~~~----------~s~~CP~Cr~~t~g 305 (323)
.|.||..-- ...|.+.|+|.|-..|.++.+. .-..||+|..+.+.
T Consensus 3488 mCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3488 MCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred eEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 699998543 2337889999999999887654 23689999887653
No 130
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.51 E-value=5.1 Score=40.38 Aligned_cols=40 Identities=25% Similarity=0.700 Sum_probs=30.0
Q ss_pred ccccccccCCC-----CcEEccCCCcccHHHHHHhccCCCCCCCC
Q 020671 260 FACFICRKPFV-----DPVVTKCKHYFCEHCALKHHSKNKKCFVC 299 (323)
Q Consensus 260 ~~C~IC~e~~~-----~PVvt~CGH~FC~~Ci~~~~~~s~~CP~C 299 (323)
..|++|.-.+. +-++=.|||-||+.|...|......|..|
T Consensus 307 r~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred CcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCc
Confidence 37999987762 33444599999999999998877767555
No 131
>PHA02862 5L protein; Provisional
Probab=55.96 E-value=9.2 Score=34.00 Aligned_cols=42 Identities=21% Similarity=0.476 Sum_probs=31.2
Q ss_pred cccccccCCCCcEEccCCC-----cccHHHHHHhcc--CCCCCCCCCCCC
Q 020671 261 ACFICRKPFVDPVVTKCKH-----YFCEHCALKHHS--KNKKCFVCNEPT 303 (323)
Q Consensus 261 ~C~IC~e~~~~PVvt~CGH-----~FC~~Ci~~~~~--~s~~CP~Cr~~t 303 (323)
.|-||++.-... +.+|.. +.-..|+.+|+. +...|++|+.+.
T Consensus 4 iCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY 52 (156)
T PHA02862 4 ICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKY 52 (156)
T ss_pred EEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeE
Confidence 588888875433 456543 457899999987 678999998863
No 132
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=55.89 E-value=4.3 Score=39.95 Aligned_cols=44 Identities=25% Similarity=0.465 Sum_probs=33.9
Q ss_pred CccccccccCCCCcEEc---cCC--CcccHHHHHHhccCCCCCCCCCCC
Q 020671 259 PFACFICRKPFVDPVVT---KCK--HYFCEHCALKHHSKNKKCFVCNEP 302 (323)
Q Consensus 259 p~~C~IC~e~~~~PVvt---~CG--H~FC~~Ci~~~~~~s~~CP~Cr~~ 302 (323)
...||||.....-.++. .=| +.+|.-|-..|.-....||.|+..
T Consensus 187 ~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 235 (309)
T PRK03564 187 RQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQS 235 (309)
T ss_pred CCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 45799999986544432 234 457999999999888999999874
No 133
>PRK11595 DNA utilization protein GntX; Provisional
Probab=55.75 E-value=12 Score=34.61 Aligned_cols=39 Identities=26% Similarity=0.646 Sum_probs=22.9
Q ss_pred CccccccccCCCCcEEccCCCcccHHHHHHhccCCCCCCCCCCC
Q 020671 259 PFACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCNEP 302 (323)
Q Consensus 259 p~~C~IC~e~~~~PVvt~CGH~FC~~Ci~~~~~~s~~CP~Cr~~ 302 (323)
|-.|.+|...+..+ ....|..|...+..-...|+.|+.+
T Consensus 5 P~~C~~C~~~~~~~-----~~~lC~~C~~~l~~~~~~C~~Cg~~ 43 (227)
T PRK11595 5 PGLCWLCRMPLALS-----HWGICSVCSRALRTLKTCCPQCGLP 43 (227)
T ss_pred CCcCccCCCccCCC-----CCcccHHHHhhCCcccCcCccCCCc
Confidence 55788888765321 1246777766553323457777654
No 134
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=54.76 E-value=5.3 Score=37.94 Aligned_cols=23 Identities=39% Similarity=1.148 Sum_probs=21.0
Q ss_pred ccccccccccCCCCccceeeccc
Q 020671 190 CKDYKETGYCGYGDSCKFMHDRG 212 (323)
Q Consensus 190 CKdYkeTG~CgfGDsCkFlHdR~ 212 (323)
|..|-..|.||-|..|+|+|...
T Consensus 209 cryynangicgkgaacrfvhept 231 (377)
T KOG1492|consen 209 CRYYNANGICGKGAACRFVHEPT 231 (377)
T ss_pred EEEecCCCcccCCceeeeecccc
Confidence 88999999999999999999753
No 135
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=53.65 E-value=6.1 Score=28.02 Aligned_cols=38 Identities=29% Similarity=0.780 Sum_probs=22.9
Q ss_pred ccccccCCC--CcEEccCCC-----cccHHHHHHhcc--CCCCCCCC
Q 020671 262 CFICRKPFV--DPVVTKCKH-----YFCEHCALKHHS--KNKKCFVC 299 (323)
Q Consensus 262 C~IC~e~~~--~PVvt~CGH-----~FC~~Ci~~~~~--~s~~CP~C 299 (323)
|-||++... .|++.+|.- +.-..|+.+|+. ....|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 556666542 257777652 457789999987 66789887
No 136
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=53.31 E-value=8.5 Score=38.66 Aligned_cols=26 Identities=19% Similarity=0.474 Sum_probs=20.5
Q ss_pred CCcccHHHHHHhcc-------------CCCCCCCCCCCC
Q 020671 278 KHYFCEHCALKHHS-------------KNKKCFVCNEPT 303 (323)
Q Consensus 278 GH~FC~~Ci~~~~~-------------~s~~CP~Cr~~t 303 (323)
....|..|+-+|+. +.-.||.||+.+
T Consensus 312 RPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 312 RPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred cchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 34469999999986 457899999864
No 137
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=53.20 E-value=4.6 Score=40.02 Aligned_cols=42 Identities=31% Similarity=0.718 Sum_probs=27.8
Q ss_pred CCCCcccCceeecceeeccCCCCccccccccccCCCCccceeecc
Q 020671 167 SHGPLRASAHIRVTARFDYQPDICKDYKETGYCGYGDSCKFMHDR 211 (323)
Q Consensus 167 ~~gP~ra~~nir~t~~~DyqPDiCKdYkeTG~CgfGDsCkFlHdR 211 (323)
..||+-.-.+++.. .-++ =.|||+|-. |.|.-||.|-|||.-
T Consensus 59 ~~~~~~~~~~~~~~-~~~~-~~vcK~~l~-glC~kgD~C~Flhe~ 100 (325)
T KOG1040|consen 59 ERGPICPKSHNDVS-DSRG-KVVCKHWLR-GLCKKGDQCEFLHEY 100 (325)
T ss_pred cCCCCCccccCCcc-ccCC-ceeehhhhh-hhhhccCcCcchhhh
Confidence 45555443444322 2333 578988877 999999999999963
No 138
>KOG3476 consensus Microtubule-associated protein CRIPT [Cytoskeleton]
Probab=46.98 E-value=2.5 Score=34.46 Aligned_cols=36 Identities=31% Similarity=0.816 Sum_probs=29.3
Q ss_pred cccccccCCCCcEEccCCCcccHHHHHHhccCCCCCCCCCCCCCC
Q 020671 261 ACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCNEPTLG 305 (323)
Q Consensus 261 ~C~IC~e~~~~PVvt~CGH~FC~~Ci~~~~~~s~~CP~Cr~~t~g 305 (323)
.|-||...+..| |..||..|+.. ...|.+|++.+..
T Consensus 56 kC~iCk~~vHQ~-----GshYC~tCAY~----KgiCAMCGKki~n 91 (100)
T KOG3476|consen 56 KCRICKQLVHQP-----GSHYCQTCAYK----KGICAMCGKKILN 91 (100)
T ss_pred hhHHHHHHhcCC-----cchhHhHhhhh----hhHHHHhhhHhhc
Confidence 699999998888 87799999874 4679999886543
No 139
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=46.48 E-value=4.4 Score=31.66 Aligned_cols=39 Identities=28% Similarity=0.623 Sum_probs=22.5
Q ss_pred ccccccccCCCCcEEccCCCcccHHHHHHhccCCCCCCCCCCCC
Q 020671 260 FACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCNEPT 303 (323)
Q Consensus 260 ~~C~IC~e~~~~PVvt~CGH~FC~~Ci~~~~~~s~~CP~Cr~~t 303 (323)
+.||.|...+ ...=+|++|..|-.. +.....||.|+.+.
T Consensus 2 ~~CP~C~~~L----~~~~~~~~C~~C~~~-~~~~a~CPdC~~~L 40 (70)
T PF07191_consen 2 NTCPKCQQEL----EWQGGHYHCEACQKD-YKKEAFCPDCGQPL 40 (70)
T ss_dssp -B-SSS-SBE----EEETTEEEETTT--E-EEEEEE-TTT-SB-
T ss_pred CcCCCCCCcc----EEeCCEEECcccccc-ceecccCCCcccHH
Confidence 4699999863 222289999999875 44568899998863
No 140
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=42.65 E-value=14 Score=26.22 Aligned_cols=31 Identities=29% Similarity=0.765 Sum_probs=22.7
Q ss_pred cccccccCCCC----cEEccCCCcccHHHHHHhcc
Q 020671 261 ACFICRKPFVD----PVVTKCKHYFCEHCALKHHS 291 (323)
Q Consensus 261 ~C~IC~e~~~~----PVvt~CGH~FC~~Ci~~~~~ 291 (323)
.|.+|...|.. ..-..||++||..|......
T Consensus 4 ~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 4 SCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred cCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 58899877632 22357999999999876543
No 141
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=42.37 E-value=10 Score=34.19 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=23.6
Q ss_pred CCCCccccccccCCCCcEEccCCCcccHHHHHHhccCCCCCCCCCCCCCCchh
Q 020671 256 DSLPFACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCNEPTLGIFN 308 (323)
Q Consensus 256 e~~p~~C~IC~e~~~~PVvt~CGH~FC~~Ci~~~~~~s~~CP~Cr~~t~gvfn 308 (323)
+..-|.|+.|...|.. . ..+...+.||.|+.+....-|
T Consensus 114 ~~~~Y~Cp~C~~rytf------------~---eA~~~~F~Cp~Cg~~L~~~dn 151 (178)
T PRK06266 114 NNMFFFCPNCHIRFTF------------D---EAMEYGFRCPQCGEMLEEYDN 151 (178)
T ss_pred CCCEEECCCCCcEEeH------------H---HHhhcCCcCCCCCCCCeeccc
Confidence 3456788877755431 1 122347999999997665544
No 142
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=40.43 E-value=27 Score=34.04 Aligned_cols=17 Identities=47% Similarity=0.927 Sum_probs=12.0
Q ss_pred CCCccccccccCCCCcE
Q 020671 257 SLPFACFICRKPFVDPV 273 (323)
Q Consensus 257 ~~p~~C~IC~e~~~~PV 273 (323)
.++..|.||.+.|..|=
T Consensus 185 ~l~c~C~iCGKaFSRPW 201 (279)
T KOG2462|consen 185 TLPCECGICGKAFSRPW 201 (279)
T ss_pred CCCcccccccccccchH
Confidence 36777888887777663
No 143
>KOG3777 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.95 E-value=20 Score=37.14 Aligned_cols=46 Identities=26% Similarity=0.555 Sum_probs=33.4
Q ss_pred CCCCCCCCCcccCceeecceeeccCCCCccccccccccCCCCccceeec
Q 020671 162 EKAGGSHGPLRASAHIRVTARFDYQPDICKDYKETGYCGYGDSCKFMHD 210 (323)
Q Consensus 162 ~~~~~~~gP~ra~~nir~t~~~DyqPDiCKdYkeTG~CgfGDsCkFlHd 210 (323)
..+.|+.||-=.--=...++.|-+.++.| +|.. .|.||.-|+|+|-
T Consensus 146 Ddplgr~GPsl~~fL~k~p~~~aq~~q~C-pygk--kctyg~kck~~h~ 191 (443)
T KOG3777|consen 146 DDPLGREGPSLDNFLSKKPLLWAQNKQPC-PYGK--KCTYGGKCKFYHP 191 (443)
T ss_pred CCcccccCcchhhhhhhccchhhhcccCC-Cccc--ccCCCCceeeccc
Confidence 35567889864311124455788889999 7766 6999999999995
No 144
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=38.36 E-value=13 Score=32.79 Aligned_cols=38 Identities=21% Similarity=0.142 Sum_probs=23.0
Q ss_pred CCCCccccccccCCCCcEEccCCCcccHHHHHHhccCCCCCCCCCCCCCCchh
Q 020671 256 DSLPFACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCNEPTLGIFN 308 (323)
Q Consensus 256 e~~p~~C~IC~e~~~~PVvt~CGH~FC~~Ci~~~~~~s~~CP~Cr~~t~gvfn 308 (323)
+..-+.|+.|...|.. .=+ +...+.||.|+.+....-|
T Consensus 106 ~~~~Y~Cp~c~~r~tf------------~eA---~~~~F~Cp~Cg~~L~~~dn 143 (158)
T TIGR00373 106 NNMFFICPNMCVRFTF------------NEA---MELNFTCPRCGAMLDYLDN 143 (158)
T ss_pred CCCeEECCCCCcEeeH------------HHH---HHcCCcCCCCCCEeeeccC
Confidence 3455678877654431 111 2247999999997655544
No 145
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=36.75 E-value=26 Score=28.05 Aligned_cols=42 Identities=21% Similarity=0.520 Sum_probs=19.2
Q ss_pred cccccccCCC-----CcE--EccCCCcccHHHHHHhcc-CCCCCCCCCCC
Q 020671 261 ACFICRKPFV-----DPV--VTKCKHYFCEHCALKHHS-KNKKCFVCNEP 302 (323)
Q Consensus 261 ~C~IC~e~~~-----~PV--vt~CGH~FC~~Ci~~~~~-~s~~CP~Cr~~ 302 (323)
.|.||.+.+- ++. ...|+-..|..|..--++ .+..||.|+.+
T Consensus 11 iCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ 60 (80)
T PF14569_consen 11 ICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTR 60 (80)
T ss_dssp B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B
T ss_pred ccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCC
Confidence 6999998761 222 236777889999875544 78999999865
No 146
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=36.48 E-value=18 Score=35.79 Aligned_cols=28 Identities=32% Similarity=0.965 Sum_probs=23.5
Q ss_pred cCCCCccccccccccCCCCccceeeccc
Q 020671 185 YQPDICKDYKETGYCGYGDSCKFMHDRG 212 (323)
Q Consensus 185 yqPDiCKdYkeTG~CgfGDsCkFlHdR~ 212 (323)
|.-.-|+.+-..|||+||-.|-|-|+..
T Consensus 272 frTePcinwe~sGyc~yg~Rc~F~hgd~ 299 (351)
T COG5063 272 FRTEPCINWEKSGYCPYGLRCCFKHGDD 299 (351)
T ss_pred cccCCccchhhcccCccccccccccCCh
Confidence 4345688898899999999999999765
No 147
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=35.70 E-value=25 Score=23.01 Aligned_cols=11 Identities=36% Similarity=0.730 Sum_probs=7.8
Q ss_pred CCCCCCCCCCC
Q 020671 292 KNKKCFVCNEP 302 (323)
Q Consensus 292 ~s~~CP~Cr~~ 302 (323)
....||+|+.+
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 35688888765
No 148
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.50 E-value=19 Score=35.61 Aligned_cols=26 Identities=19% Similarity=0.713 Sum_probs=21.4
Q ss_pred CCCcccHHHHHHhcc-------------CCCCCCCCCCC
Q 020671 277 CKHYFCEHCALKHHS-------------KNKKCFVCNEP 302 (323)
Q Consensus 277 CGH~FC~~Ci~~~~~-------------~s~~CP~Cr~~ 302 (323)
|....|..|+-+|+. ++..||.||+.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~ 363 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKN 363 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhc
Confidence 556689999998875 67899999985
No 150
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.49 E-value=32 Score=29.22 Aligned_cols=40 Identities=35% Similarity=0.794 Sum_probs=31.3
Q ss_pred cccccccCCCCcE--------------EccCCCcccHHHHHHhccCCCCCCCCC
Q 020671 261 ACFICRKPFVDPV--------------VTKCKHYFCEHCALKHHSKNKKCFVCN 300 (323)
Q Consensus 261 ~C~IC~e~~~~PV--------------vt~CGH~FC~~Ci~~~~~~s~~CP~Cr 300 (323)
.|.-|+..|..+. -..|.+.||.+|=.=+...-..||-|.
T Consensus 57 ~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 57 FCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred cccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 4999999886541 357999999999776666777899985
No 151
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=35.45 E-value=32 Score=25.85 Aligned_cols=40 Identities=25% Similarity=0.531 Sum_probs=27.8
Q ss_pred cccccccCCCCc--EEccCCC--cccHHHHHHhccCCCCCCCCCCC
Q 020671 261 ACFICRKPFVDP--VVTKCKH--YFCEHCALKHHSKNKKCFVCNEP 302 (323)
Q Consensus 261 ~C~IC~e~~~~P--Vvt~CGH--~FC~~Ci~~~~~~s~~CP~Cr~~ 302 (323)
.|-.|...+..- -..-|.+ .||..|+...+. ..||.|+-.
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~--~~CPNCgGe 50 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETMLN--GVCPNCGGE 50 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHhc--CcCcCCCCc
Confidence 466777766322 3445654 799999998874 689999754
No 152
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=34.87 E-value=22 Score=22.07 Aligned_cols=21 Identities=43% Similarity=1.023 Sum_probs=14.3
Q ss_pred Ccccccccc-ccCCCCccceeecc
Q 020671 189 ICKDYKETG-YCGYGDSCKFMHDR 211 (323)
Q Consensus 189 iCKdYkeTG-~CgfGDsCkFlHdR 211 (323)
+| .|-.+| .|- -++|.|.|-|
T Consensus 2 lC-~yEl~Gg~Cn-d~~C~~QHfr 23 (23)
T PF10650_consen 2 LC-PYELTGGVCN-DPDCEFQHFR 23 (23)
T ss_pred CC-ccccCCCeeC-CCCCCccccC
Confidence 46 465566 775 3589999965
No 153
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=34.13 E-value=20 Score=41.43 Aligned_cols=49 Identities=14% Similarity=0.310 Sum_probs=32.8
Q ss_pred CccccccccCCCCcEEccCCCc-----ccHHHHHHhcc---CCCCCCCCCCCCCCch
Q 020671 259 PFACFICRKPFVDPVVTKCKHY-----FCEHCALKHHS---KNKKCFVCNEPTLGIF 307 (323)
Q Consensus 259 p~~C~IC~e~~~~PVvt~CGH~-----FC~~Ci~~~~~---~s~~CP~Cr~~t~gvf 307 (323)
.+.|+-|........-..||+. +|..|-...-. ....||.|+.+.....
T Consensus 667 ~rkCPkCG~~t~~~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~~ 723 (1337)
T PRK14714 667 RRRCPSCGTETYENRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPYQ 723 (1337)
T ss_pred EEECCCCCCccccccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccccc
Confidence 4799999986554445568843 59988665332 1348999998755443
No 154
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=33.10 E-value=15 Score=35.30 Aligned_cols=36 Identities=22% Similarity=0.609 Sum_probs=0.0
Q ss_pred ccccccccccCCCCccceeecccccccccccchhHH
Q 020671 190 CKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWE 225 (323)
Q Consensus 190 CKdYkeTG~CgfGDsCkFlHdR~dyk~GwqlerEwe 225 (323)
|+.|.++|-|.+||-|.=+|-.....+-.-|...|.
T Consensus 18 c~fy~k~gacR~gdrcsR~h~kpt~s~t~ll~nmyq 53 (260)
T KOG2202|consen 18 CSFYFKIGACRHGDRCSRLHEKPTFSQTVLLKNMYQ 53 (260)
T ss_pred cchHHhhcccccccHHHHhhcccccchHHHHHHHHh
No 155
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.93 E-value=27 Score=32.20 Aligned_cols=44 Identities=25% Similarity=0.448 Sum_probs=32.9
Q ss_pred ccccccccCCCCcE-------EccCCCcccHHHHHHhccC-----------CCCCCCCCCCC
Q 020671 260 FACFICRKPFVDPV-------VTKCKHYFCEHCALKHHSK-----------NKKCFVCNEPT 303 (323)
Q Consensus 260 ~~C~IC~e~~~~PV-------vt~CGH~FC~~Ci~~~~~~-----------s~~CP~Cr~~t 303 (323)
..|.||.-.-.+.. ...||..|-.-|+..|++. -..||.|..|.
T Consensus 166 ~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pi 227 (234)
T KOG3268|consen 166 GACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPI 227 (234)
T ss_pred hcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcc
Confidence 47999986543322 3579999999999999871 15799998775
No 156
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=32.79 E-value=11 Score=23.05 Aligned_cols=12 Identities=33% Similarity=0.708 Sum_probs=6.0
Q ss_pred cCCCCCCCCCCC
Q 020671 291 SKNKKCFVCNEP 302 (323)
Q Consensus 291 ~~s~~CP~Cr~~ 302 (323)
.....||.|+.+
T Consensus 11 ~~~~fC~~CG~~ 22 (23)
T PF13240_consen 11 DDAKFCPNCGTP 22 (23)
T ss_pred CcCcchhhhCCc
Confidence 344555555543
No 157
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=32.39 E-value=15 Score=37.48 Aligned_cols=45 Identities=20% Similarity=0.349 Sum_probs=0.0
Q ss_pred ccccccccCCCCc--------------EEccCCCcccHHHHHHhcc---CCCCCCCCCCCCC
Q 020671 260 FACFICRKPFVDP--------------VVTKCKHYFCEHCALKHHS---KNKKCFVCNEPTL 304 (323)
Q Consensus 260 ~~C~IC~e~~~~P--------------Vvt~CGH~FC~~Ci~~~~~---~s~~CP~Cr~~t~ 304 (323)
..||+=+..+..| |-+.|||++-..=+-.... ..+.||+|+....
T Consensus 278 pQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h~Wg~~~~~~~~~r~CPlCr~~g~ 339 (416)
T PF04710_consen 278 PQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYHNWGQDSDRDPRSRTCPLCRQVGP 339 (416)
T ss_dssp --------------------------------------------------------------
T ss_pred CCCCcCCCccccccccccccccccCceeeccccceeeecccccccccccccccCCCccccCC
Confidence 4788877666444 4578999887653221111 3689999988543
No 158
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.00 E-value=31 Score=27.36 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=18.8
Q ss_pred CCcccHHHHHHhccCCCCCCCCCCC
Q 020671 278 KHYFCEHCALKHHSKNKKCFVCNEP 302 (323)
Q Consensus 278 GH~FC~~Ci~~~~~~s~~CP~Cr~~ 302 (323)
-|.||-.|+...+. -.||.|+-.
T Consensus 28 EcTFCadCae~~l~--g~CPnCGGe 50 (84)
T COG3813 28 ECTFCADCAENRLH--GLCPNCGGE 50 (84)
T ss_pred eeehhHhHHHHhhc--CcCCCCCch
Confidence 37899999998775 589999764
No 159
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.95 E-value=26 Score=36.04 Aligned_cols=36 Identities=31% Similarity=0.490 Sum_probs=27.7
Q ss_pred CCCCccccccccCCCCc------EEccCCCcccHHHHHHhcc
Q 020671 256 DSLPFACFICRKPFVDP------VVTKCKHYFCEHCALKHHS 291 (323)
Q Consensus 256 e~~p~~C~IC~e~~~~P------Vvt~CGH~FC~~Ci~~~~~ 291 (323)
+...-.||-|.-.+... .-+.|+|+||+-|......
T Consensus 365 ~~N~krCP~C~v~IEr~eGCnKM~C~~c~~~fc~~c~~~l~~ 406 (445)
T KOG1814|consen 365 ESNSKRCPKCKVVIERSEGCNKMHCTKCGTYFCWICAELLYP 406 (445)
T ss_pred HhcCCCCCcccceeecCCCccceeeccccccceeehhhhcCC
Confidence 34456899999887443 3589999999999987763
No 160
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=30.54 E-value=17 Score=37.14 Aligned_cols=48 Identities=25% Similarity=0.468 Sum_probs=0.0
Q ss_pred CccccccccCC--------CC---------c--EEccCCCcccHHHHHHhcc---------CCCCCCCCCCCCCCc
Q 020671 259 PFACFICRKPF--------VD---------P--VVTKCKHYFCEHCALKHHS---------KNKKCFVCNEPTLGI 306 (323)
Q Consensus 259 p~~C~IC~e~~--------~~---------P--Vvt~CGH~FC~~Ci~~~~~---------~s~~CP~Cr~~t~gv 306 (323)
.-.|++|+..- .+ | ...+|||..-+..+.-|-+ ....||.|..+..+-
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~ 403 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGE 403 (416)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccCC
Confidence 55899999542 11 1 2458999888888887765 237899998876544
No 161
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=29.39 E-value=16 Score=37.98 Aligned_cols=30 Identities=20% Similarity=0.201 Sum_probs=27.0
Q ss_pred ccCCCCccccccccccCCCCccceeecccc
Q 020671 184 DYQPDICKDYKETGYCGYGDSCKFMHDRGD 213 (323)
Q Consensus 184 DyqPDiCKdYkeTG~CgfGDsCkFlHdR~d 213 (323)
-|-+-+||+|-++|+|-.|+.|++.|.+.-
T Consensus 209 ~~s~~r~k~fee~g~~~r~el~p~~hg~~~ 238 (526)
T KOG2135|consen 209 RNSENRRKFFEEFGVLERGELCPTHHGCVP 238 (526)
T ss_pred cccHHhhhhhHhhceeeeccccccccccce
Confidence 357889999999999999999999998764
No 162
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=28.67 E-value=32 Score=36.28 Aligned_cols=34 Identities=29% Similarity=0.794 Sum_probs=29.2
Q ss_pred ecceeeccCCCCccccccccccCCCCccceeeccc
Q 020671 178 RVTARFDYQPDICKDYKETGYCGYGDSCKFMHDRG 212 (323)
Q Consensus 178 r~t~~~DyqPDiCKdYkeTG~CgfGDsCkFlHdR~ 212 (323)
|.--++-|-=-.|-+|+. |-|.-||+|-|-|.+=
T Consensus 227 RDPRkyhYs~tpCPefrk-G~C~rGD~CEyaHgvf 260 (528)
T KOG1595|consen 227 RDPRKYHYSSTPCPEFRK-GSCERGDSCEYAHGVF 260 (528)
T ss_pred CCcccccccCccCccccc-CCCCCCCcccccccee
Confidence 455578887788999988 9999999999999875
No 163
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=28.20 E-value=52 Score=23.02 Aligned_cols=31 Identities=32% Similarity=0.638 Sum_probs=23.2
Q ss_pred CccccccccCCCCc-EEccCCCcccHHHHHHh
Q 020671 259 PFACFICRKPFVDP-VVTKCKHYFCEHCALKH 289 (323)
Q Consensus 259 p~~C~IC~e~~~~P-Vvt~CGH~FC~~Ci~~~ 289 (323)
=|.|..|...+... ....=+..||..|..+.
T Consensus 26 Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~ 57 (58)
T PF00412_consen 26 CFKCSKCGKPLNDGDFYEKDGKPYCKDCYQKR 57 (58)
T ss_dssp TSBETTTTCBTTTSSEEEETTEEEEHHHHHHH
T ss_pred ccccCCCCCccCCCeeEeECCEEECHHHHhhh
Confidence 46888899888655 45555788999998764
No 164
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=28.17 E-value=19 Score=39.96 Aligned_cols=59 Identities=19% Similarity=0.469 Sum_probs=0.0
Q ss_pred CCCccccccccCCCCcEEccCC-C----cccHHHHHHhccCCCCCCCCCCCCCCchhhHHHHHHHH
Q 020671 257 SLPFACFICRKPFVDPVVTKCK-H----YFCEHCALKHHSKNKKCFVCNEPTLGIFNTALEIRKRM 317 (323)
Q Consensus 257 ~~p~~C~IC~e~~~~PVvt~CG-H----~FC~~Ci~~~~~~s~~CP~Cr~~t~gvfn~Ak~L~~kL 317 (323)
---..|+-|...-.......|| | ++|..|-...- ...||.|+..+...-...-+|...+
T Consensus 653 i~~r~Cp~Cg~~t~~~~Cp~CG~~T~~~~~Cp~C~~~~~--~~~C~~C~~~~~~~~~~~i~l~~~~ 716 (900)
T PF03833_consen 653 IGRRRCPKCGKETFYNRCPECGSHTEPVYVCPDCGIEVE--EDECPKCGRETTSYSKQKIDLKEEY 716 (900)
T ss_dssp ------------------------------------------------------------------
T ss_pred eecccCcccCCcchhhcCcccCCccccceeccccccccC--ccccccccccCcccceeecCHHHHH
Confidence 3356899998876555555687 3 58999987654 3499999987655544444444443
No 165
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=28.06 E-value=36 Score=32.14 Aligned_cols=25 Identities=20% Similarity=0.550 Sum_probs=21.4
Q ss_pred cccHHHHHHhccCCCCCCCCCCCCC
Q 020671 280 YFCEHCALKHHSKNKKCFVCNEPTL 304 (323)
Q Consensus 280 ~FC~~Ci~~~~~~s~~CP~Cr~~t~ 304 (323)
--|..|-+...+..+.||+|.+.+.
T Consensus 195 K~C~sC~qqIHRNAPiCPlCK~KsR 219 (230)
T PF10146_consen 195 KTCQSCHQQIHRNAPICPLCKAKSR 219 (230)
T ss_pred chhHhHHHHHhcCCCCCcccccccc
Confidence 3699999999999999999987554
No 166
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=27.22 E-value=40 Score=36.26 Aligned_cols=48 Identities=19% Similarity=0.379 Sum_probs=32.8
Q ss_pred CCCCccccccccCCCCcEE-ccCCCcccHHHHHHhcc-----CCCCCCCCCCCCC
Q 020671 256 DSLPFACFICRKPFVDPVV-TKCKHYFCEHCALKHHS-----KNKKCFVCNEPTL 304 (323)
Q Consensus 256 e~~p~~C~IC~e~~~~PVv-t~CGH~FC~~Ci~~~~~-----~s~~CP~Cr~~t~ 304 (323)
-.+.+.|+|+...+.-|.. ..|.|+=|.+-.. ++. .+..||+|.+...
T Consensus 303 ~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~-~lq~n~~~pTW~CPVC~~~~~ 356 (636)
T KOG2169|consen 303 LRVSLNCPLSKMRMSLPARGHTCKHLQCFDALS-YLQMNEQKPTWRCPVCQKAAP 356 (636)
T ss_pred ceeEecCCcccceeecCCcccccccceecchhh-hHHhccCCCeeeCccCCcccc
Confidence 4567899999988776664 4688876665332 111 6799999977543
No 167
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.87 E-value=42 Score=36.52 Aligned_cols=43 Identities=23% Similarity=0.516 Sum_probs=34.9
Q ss_pred cccccccCCCCcEEccCCC-cccHHHHHHhcc--C----CCCCCCCCCCC
Q 020671 261 ACFICRKPFVDPVVTKCKH-YFCEHCALKHHS--K----NKKCFVCNEPT 303 (323)
Q Consensus 261 ~C~IC~e~~~~PVvt~CGH-~FC~~Ci~~~~~--~----s~~CP~Cr~~t 303 (323)
.|.||-..+.-+..-.||| ..|..|..+..- . ..-||+|+..+
T Consensus 2 ~c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~ 51 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREV 51 (669)
T ss_pred CcceeecCccccccccccccccchhhhhhhhhhcccccccccCcccccce
Confidence 5999999988888889999 799999988754 3 45569998843
No 168
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=26.70 E-value=32 Score=32.51 Aligned_cols=41 Identities=15% Similarity=0.478 Sum_probs=33.0
Q ss_pred cccccccCCCCcEE-ccCCCcccHHHHHHhccCCCCCCCCCC
Q 020671 261 ACFICRKPFVDPVV-TKCKHYFCEHCALKHHSKNKKCFVCNE 301 (323)
Q Consensus 261 ~C~IC~e~~~~PVv-t~CGH~FC~~Ci~~~~~~s~~CP~Cr~ 301 (323)
.|.+|.......+. -.|+--+-..|+..++.....||.|+-
T Consensus 183 ~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~~~cphc~d 224 (235)
T KOG4718|consen 183 NCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRRDICPHCGD 224 (235)
T ss_pred HHhHhHHHhheeeccCcccchhhhHHHHHHhcccCcCCchhc
Confidence 69999998776553 367766778999999998899999953
No 169
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=26.60 E-value=16 Score=26.12 Aligned_cols=16 Identities=44% Similarity=0.968 Sum_probs=13.4
Q ss_pred cCCCcccHHHHHHhcc
Q 020671 276 KCKHYFCEHCALKHHS 291 (323)
Q Consensus 276 ~CGH~FC~~Ci~~~~~ 291 (323)
.|+|.||..|...|..
T Consensus 45 ~C~~~fC~~C~~~~H~ 60 (64)
T smart00647 45 KCGFSFCFRCKVPWHS 60 (64)
T ss_pred CCCCeECCCCCCcCCC
Confidence 6899999999887754
No 170
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=26.59 E-value=33 Score=37.55 Aligned_cols=42 Identities=26% Similarity=0.619 Sum_probs=30.7
Q ss_pred cccccccCCCCc----------EEccCCCcc--------------------cHHHHHHhcc--------CCCCCCCCCCC
Q 020671 261 ACFICRKPFVDP----------VVTKCKHYF--------------------CEHCALKHHS--------KNKKCFVCNEP 302 (323)
Q Consensus 261 ~C~IC~e~~~~P----------Vvt~CGH~F--------------------C~~Ci~~~~~--------~s~~CP~Cr~~ 302 (323)
.|.-|+.-+.+| .-|.||..| |..|..++.. +...||.|+=.
T Consensus 103 ~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~CGP~ 182 (750)
T COG0068 103 TCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPKCGPH 182 (750)
T ss_pred hhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCcccCCC
Confidence 688888777666 246677544 9999988754 56889999764
No 171
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=26.08 E-value=33 Score=25.46 Aligned_cols=41 Identities=17% Similarity=0.198 Sum_probs=27.7
Q ss_pred CccccccccCCCCcEEccCCCcccHHHHHHhccCCCCCCCCCCCCCCchhhHHHHHH
Q 020671 259 PFACFICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCNEPTLGIFNTALEIRK 315 (323)
Q Consensus 259 p~~C~IC~e~~~~PVvt~CGH~FC~~Ci~~~~~~s~~CP~Cr~~t~gvfn~Ak~L~~ 315 (323)
.-.|+.|...... ........||.|+...+--.|.|.+|..
T Consensus 28 Sq~C~~CG~~~~~----------------~~~~r~~~C~~Cg~~~~rD~naA~NI~~ 68 (69)
T PF07282_consen 28 SQTCPRCGHRNKK----------------RRSGRVFTCPNCGFEMDRDVNAARNILR 68 (69)
T ss_pred ccCccCccccccc----------------ccccceEEcCCCCCEECcHHHHHHHHhc
Confidence 3468888876654 1112456799998887777788887754
No 172
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=25.83 E-value=45 Score=33.40 Aligned_cols=40 Identities=28% Similarity=0.728 Sum_probs=28.4
Q ss_pred cccccccCCCC-cE--EccCCCcccHHHHHHhccCCCCCCCCC
Q 020671 261 ACFICRKPFVD-PV--VTKCKHYFCEHCALKHHSKNKKCFVCN 300 (323)
Q Consensus 261 ~C~IC~e~~~~-PV--vt~CGH~FC~~Ci~~~~~~s~~CP~Cr 300 (323)
.|..|...... +. --.|.++||.+|=.=....--.||-|.
T Consensus 332 ~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 332 FCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred ceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcC
Confidence 39999555433 32 237999999999765555567899996
No 173
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.79 E-value=27 Score=30.88 Aligned_cols=25 Identities=32% Similarity=0.737 Sum_probs=15.9
Q ss_pred ccccccccCCCCcEEccCCCcccHHHHHH
Q 020671 260 FACFICRKPFVDPVVTKCKHYFCEHCALK 288 (323)
Q Consensus 260 ~~C~IC~e~~~~PVvt~CGH~FC~~Ci~~ 288 (323)
-.|.||...- ..-.||| -|..|-++
T Consensus 66 atC~IC~KTK---FADG~GH-~C~YCq~r 90 (169)
T KOG3799|consen 66 ATCGICHKTK---FADGCGH-NCSYCQTR 90 (169)
T ss_pred cchhhhhhcc---cccccCc-ccchhhhh
Confidence 3799999863 2346888 35555444
No 174
>PF14353 CpXC: CpXC protein
Probab=25.79 E-value=41 Score=28.07 Aligned_cols=43 Identities=19% Similarity=0.140 Sum_probs=23.8
Q ss_pred ccccccccCCCCcEEccCCCcccHHHHHHhcc---CCCCCCCCCCC
Q 020671 260 FACFICRKPFVDPVVTKCKHYFCEHCALKHHS---KNKKCFVCNEP 302 (323)
Q Consensus 260 ~~C~IC~e~~~~PVvt~CGH~FC~~Ci~~~~~---~s~~CP~Cr~~ 302 (323)
..||.|...+...+-+.-.-..=..-....+. ....||.|+..
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~ 47 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHK 47 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCc
Confidence 46898988886555433322111222222222 45789999885
No 175
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=25.53 E-value=20 Score=22.66 Aligned_cols=8 Identities=25% Similarity=0.613 Sum_probs=4.1
Q ss_pred ccccccCC
Q 020671 262 CFICRKPF 269 (323)
Q Consensus 262 C~IC~e~~ 269 (323)
||-|...+
T Consensus 3 CP~C~~~V 10 (26)
T PF10571_consen 3 CPECGAEV 10 (26)
T ss_pred CCCCcCCc
Confidence 55555544
No 176
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=24.43 E-value=36 Score=33.87 Aligned_cols=24 Identities=29% Similarity=0.711 Sum_probs=20.9
Q ss_pred CccccccccccCCCCccceeeccc
Q 020671 189 ICKDYKETGYCGYGDSCKFMHDRG 212 (323)
Q Consensus 189 iCKdYkeTG~CgfGDsCkFlHdR~ 212 (323)
.|+.|...|+|.-|..|-|+|..-
T Consensus 107 ec~ff~~~g~c~~~~~c~y~h~dp 130 (325)
T KOG1040|consen 107 ECKFFSLFGECTNGKDCPYLHGDP 130 (325)
T ss_pred cccccccccccccccCCcccCCCh
Confidence 377888899999999999999883
No 177
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.77 E-value=44 Score=32.98 Aligned_cols=53 Identities=42% Similarity=0.799 Sum_probs=45.6
Q ss_pred cccccCCCCcEEccCCCcccHHHHHHhccCCCCCCCCCCCCCCchhhHHHHHHHHH
Q 020671 263 FICRKPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCNEPTLGIFNTALEIRKRMA 318 (323)
Q Consensus 263 ~IC~e~~~~PVvt~CGH~FC~~Ci~~~~~~s~~CP~Cr~~t~gvfn~Ak~L~~kLk 318 (323)
.+|...+.+|+++-|. |..|.......+-.|.+|..+|-+.+..+..+..+++
T Consensus 75 s~~~~~~ed~vv~y~s---~~~~~~~g~~dsgat~t~e~~te~~~Daqa~~er~~k 127 (313)
T KOG1813|consen 75 SICQNPFEDPVVTYCS---CDKCALKGHTDSGATATLEEPTEGLRDAQAIIERRIK 127 (313)
T ss_pred ccccCcccccceeecc---ccccccCCccccCceeEeecCcccchhHHHHhhhhHH
Confidence 7899999999999888 8899999888899999999999999888666555554
No 178
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=23.39 E-value=33 Score=32.69 Aligned_cols=31 Identities=32% Similarity=0.750 Sum_probs=24.7
Q ss_pred eecc--CCCCccccccccccCCCCccceeeccc
Q 020671 182 RFDY--QPDICKDYKETGYCGYGDSCKFMHDRG 212 (323)
Q Consensus 182 ~~Dy--qPDiCKdYkeTG~CgfGDsCkFlHdR~ 212 (323)
.+.| .--||-.|..-|||-+|-+|+-.|...
T Consensus 281 hihysenapicfefakygfcelgtscknqhilq 313 (377)
T KOG1492|consen 281 HIHYSENAPICFEFAKYGFCELGTSCKNQHILQ 313 (377)
T ss_pred EEeecCCCceeeeehhcceeccccccccceeee
Confidence 4444 345898899999999999999999753
No 179
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=23.11 E-value=55 Score=22.37 Aligned_cols=23 Identities=30% Similarity=0.764 Sum_probs=13.1
Q ss_pred ccccccCCCC-cEEcc-CCCcccHH
Q 020671 262 CFICRKPFVD-PVVTK-CKHYFCEH 284 (323)
Q Consensus 262 C~IC~e~~~~-PVvt~-CGH~FC~~ 284 (323)
|.+|.....- |..=. |+.+||..
T Consensus 1 C~~C~~~~~l~~f~C~~C~~~FC~~ 25 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCGNLFCGE 25 (39)
T ss_pred CcccCCcccccCeECCccCCccccc
Confidence 4556655443 55444 77777763
No 180
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=22.45 E-value=20 Score=26.63 Aligned_cols=30 Identities=27% Similarity=0.651 Sum_probs=15.5
Q ss_pred cccccccCCCCc----EEccCCCcccHHHHHHhc
Q 020671 261 ACFICRKPFVDP----VVTKCKHYFCEHCALKHH 290 (323)
Q Consensus 261 ~C~IC~e~~~~P----Vvt~CGH~FC~~Ci~~~~ 290 (323)
.|.+|...|.-- .--.||+.||..|.....
T Consensus 11 ~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 11 NCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp B-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred cCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 699999998321 124699999999986544
No 181
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=22.38 E-value=22 Score=24.53 Aligned_cols=25 Identities=20% Similarity=0.438 Sum_probs=14.1
Q ss_pred cCCCcccHHHHHHhccCCCCCCCCCC
Q 020671 276 KCKHYFCEHCALKHHSKNKKCFVCNE 301 (323)
Q Consensus 276 ~CGH~FC~~Ci~~~~~~s~~CP~Cr~ 301 (323)
.|||.|-...-..- .....||.|+.
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 56666544321111 24678999987
No 182
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=22.35 E-value=41 Score=35.55 Aligned_cols=25 Identities=36% Similarity=1.002 Sum_probs=18.9
Q ss_pred CCCCccccccc--cccCCCCccceeec
Q 020671 186 QPDICKDYKET--GYCGYGDSCKFMHD 210 (323)
Q Consensus 186 qPDiCKdYkeT--G~CgfGDsCkFlHd 210 (323)
|--+|-.-..+ --|.|||+|+|.||
T Consensus 75 ~n~LCPsli~g~~~~C~f~d~Crf~HD 101 (614)
T KOG2333|consen 75 QNRLCPSLIQGDISKCSFGDNCRFVHD 101 (614)
T ss_pred hhccChHhhcCCCccCccccccccccc
Confidence 34466655555 47999999999997
No 183
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=22.22 E-value=41 Score=35.49 Aligned_cols=31 Identities=42% Similarity=0.992 Sum_probs=25.1
Q ss_pred ceeeccCCCC-cccc-ccccccCCCCc-cceeec
Q 020671 180 TARFDYQPDI-CKDY-KETGYCGYGDS-CKFMHD 210 (323)
Q Consensus 180 t~~~DyqPDi-CKdY-keTG~CgfGDs-CkFlHd 210 (323)
-..|+|-||| |--| -.||.|+=|+. |.|+|-
T Consensus 68 ~Gs~~~~~~i~~~~~~e~~~~C~~~~~~C~~~g~ 101 (528)
T KOG1595|consen 68 DGSFNYSPDIYCTKYDEVTGICPDGDEHCAVLGR 101 (528)
T ss_pred cCccccccceeecchhhccccCCCCcccchhccc
Confidence 3468999998 6555 46799999999 999994
No 184
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=21.98 E-value=51 Score=31.57 Aligned_cols=27 Identities=19% Similarity=0.471 Sum_probs=22.4
Q ss_pred CcccHHHHHHhccCCCCCCCCCCCCCC
Q 020671 279 HYFCEHCALKHHSKNKKCFVCNEPTLG 305 (323)
Q Consensus 279 H~FC~~Ci~~~~~~s~~CP~Cr~~t~g 305 (323)
.-.|+.|-.+..+..+.||+|...+..
T Consensus 249 MK~ClsChqqIHRNAPiCPlCKaKsRS 275 (286)
T KOG4451|consen 249 MKVCLSCHQQIHRNAPICPLCKAKSRS 275 (286)
T ss_pred chHHHHHHHHHhcCCCCCcchhhcccc
Confidence 346999999999999999999876543
No 185
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.85 E-value=15 Score=35.01 Aligned_cols=43 Identities=26% Similarity=0.522 Sum_probs=33.6
Q ss_pred ccccccccCCC------CcEEcc--------CCCcccHHHHHHhcc-CCCCCCCCCCC
Q 020671 260 FACFICRKPFV------DPVVTK--------CKHYFCEHCALKHHS-KNKKCFVCNEP 302 (323)
Q Consensus 260 ~~C~IC~e~~~------~PVvt~--------CGH~FC~~Ci~~~~~-~s~~CP~Cr~~ 302 (323)
-.|.||...+. .|.+.. |||..|..|+..... ....||.|+..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 46899988774 355566 999999999998865 34799999864
No 186
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=21.74 E-value=46 Score=29.10 Aligned_cols=28 Identities=32% Similarity=0.664 Sum_probs=20.6
Q ss_pred CCC--ccccccccccCCCCccceeeccccccc
Q 020671 187 PDI--CKDYKETGYCGYGDSCKFMHDRGDYKS 216 (323)
Q Consensus 187 PDi--CKdYkeTG~CgfGDsCkFlHdR~dyk~ 216 (323)
||| |++-.. |||-.| .|.|+++-..+-+
T Consensus 40 ~~i~~Cp~ey~-~YClHG-~C~yI~dl~~~~C 69 (139)
T PHA03099 40 PAIRLCGPEGD-GYCLHG-DCIHARDIDGMYC 69 (139)
T ss_pred cccccCChhhC-CEeECC-EEEeeccCCCcee
Confidence 665 654433 899999 8999998776553
No 187
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=21.10 E-value=66 Score=32.24 Aligned_cols=45 Identities=20% Similarity=0.358 Sum_probs=0.0
Q ss_pred cccccccCC-------------------CCcEEccCCCcccHHHHHHhcc---------CCCCCCCCCCCCCC
Q 020671 261 ACFICRKPF-------------------VDPVVTKCKHYFCEHCALKHHS---------KNKKCFVCNEPTLG 305 (323)
Q Consensus 261 ~C~IC~e~~-------------------~~PVvt~CGH~FC~~Ci~~~~~---------~s~~CP~Cr~~t~g 305 (323)
+||+|+..- -.-...+|||..-+.=..=|.+ ....||.|..+..+
T Consensus 343 ~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 343 ECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
No 188
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=20.70 E-value=46 Score=32.67 Aligned_cols=42 Identities=24% Similarity=0.485 Sum_probs=31.3
Q ss_pred cccccccCCCCcEEc----cCCCc--ccHHHHHHhccCCCCCCCCCCC
Q 020671 261 ACFICRKPFVDPVVT----KCKHY--FCEHCALKHHSKNKKCFVCNEP 302 (323)
Q Consensus 261 ~C~IC~e~~~~PVvt----~CGH~--FC~~Ci~~~~~~s~~CP~Cr~~ 302 (323)
-||+|...+...++. .=|-. -|.-|...|.-...+|-.|...
T Consensus 187 ~CPvCGS~PvaSmV~~g~~~~GlRYL~CslC~teW~~VR~KC~nC~~t 234 (308)
T COG3058 187 YCPVCGSMPVASMVQIGETEQGLRYLHCSLCETEWHYVRVKCSNCEQS 234 (308)
T ss_pred cCCCcCCCCcceeeeecCccccchhhhhhhHHHHHHHHHHHhcccccc
Confidence 699999987655442 33433 4999999998877788888764
No 189
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=20.53 E-value=27 Score=21.67 Aligned_cols=10 Identities=30% Similarity=0.584 Sum_probs=4.8
Q ss_pred CCCCCCCCCC
Q 020671 292 KNKKCFVCNE 301 (323)
Q Consensus 292 ~s~~CP~Cr~ 301 (323)
....||.|+.
T Consensus 15 ~~~fC~~CG~ 24 (26)
T PF13248_consen 15 DAKFCPNCGA 24 (26)
T ss_pred ccccChhhCC
Confidence 3445555544
No 190
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.37 E-value=49 Score=29.11 Aligned_cols=22 Identities=27% Similarity=0.603 Sum_probs=16.7
Q ss_pred cccccCCCCcEEccCCCcccHH
Q 020671 263 FICRKPFVDPVVTKCKHYFCEH 284 (323)
Q Consensus 263 ~IC~e~~~~PVvt~CGH~FC~~ 284 (323)
.||...-..-+.-.|||.||..
T Consensus 61 fi~qs~~~rv~rcecghsf~d~ 82 (165)
T COG4647 61 FICQSAQKRVIRCECGHSFGDY 82 (165)
T ss_pred EEEecccccEEEEeccccccCh
Confidence 5788776665566899999974
Done!