BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020672
(323 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225429934|ref|XP_002283851.1| PREDICTED: UPF0082 protein At2g25830 [Vitis vinifera]
gi|296081846|emb|CBI20851.3| unnamed protein product [Vitis vinifera]
Length = 319
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 249/322 (77%), Positives = 285/322 (88%), Gaps = 4/322 (1%)
Query: 1 MGSHSSTRAVGAILHRISNGVSSKWSPNSFALSKHGLLSRNLFSSASSISSWIPLYEVKH 60
MGS+SS RA GA+LHR SNGV K S NS AL + G L +N SS SS SSW+ LYEVK
Sbjct: 1 MGSYSSIRAFGALLHRFSNGVPFKHS-NSVAL-RTGFLPKNP-SSFSSKSSWLSLYEVK- 56
Query: 61 CNFQVRTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNT 120
+ +VRTI+TF+PVCMGRRSSKIAGRKGAQDAKKAKLYS++GKEV+SAVK+ GPNP SNT
Sbjct: 57 LSVRVRTIQTFSPVCMGRRSSKIAGRKGAQDAKKAKLYSKIGKEVVSAVKRDGPNPKSNT 116
Query: 121 VLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITR 180
+LAAVLEKAKELDVPK+IVERNIKRASEKGQEA+IEK YEVYG+GGVS+++EVLTDKI R
Sbjct: 117 ILAAVLEKAKELDVPKEIVERNIKRASEKGQEAYIEKFYEVYGFGGVSMIIEVLTDKINR 176
Query: 181 SVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPP 240
SVAAVREV+KDCGGKMADPGSVMFKFRRARVVN+K ++ADKDQLL IALD GAEDVIEPP
Sbjct: 177 SVAAVREVMKDCGGKMADPGSVMFKFRRARVVNVKASEADKDQLLTIALDTGAEDVIEPP 236
Query: 241 VNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAME 300
V EDD +EDR+E YYK+V++++NY+ I KLRE GI FETDNG E+LPITTIEVDDEAM+
Sbjct: 237 VYEDDAEEDRSESYYKIVTSAENYSAILEKLREEGINFETDNGFEMLPITTIEVDDEAMD 296
Query: 301 LNKELIAKLLELDDVDAVYTDQ 322
LNKEL++KLLELDDVDAVY DQ
Sbjct: 297 LNKELMSKLLELDDVDAVYMDQ 318
>gi|255550912|ref|XP_002516504.1| conserved hypothetical protein [Ricinus communis]
gi|223544324|gb|EEF45845.1| conserved hypothetical protein [Ricinus communis]
Length = 311
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 234/310 (75%), Positives = 262/310 (84%), Gaps = 11/310 (3%)
Query: 16 RISNGVSSKWSPNSFALSKHGLLSRNL---FSSASSISSWIPLYEVKHCNFQVRTIRTFA 72
RIS V + S +K G LS NL F +++ +S HC +R I T+
Sbjct: 9 RISYVVLMQEDHISSKRTKKGSLSLNLHKAFLRSANFNS--------HCQVNLRQIWTYP 60
Query: 73 PVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKEL 132
PVCMGRRS KIAGRKGAQDAKKAKLYSR+GKEV+SAVKKGGP+P SNTVLAA+LEKAKEL
Sbjct: 61 PVCMGRRSCKIAGRKGAQDAKKAKLYSRIGKEVVSAVKKGGPSPISNTVLAALLEKAKEL 120
Query: 133 DVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDC 192
DVPKDI+ERNIKRAS+KGQEA+IEK+YEVYG+GGVSIVVEVLTDKI RSVAAVREVVKD
Sbjct: 121 DVPKDILERNIKRASDKGQEAYIEKIYEVYGFGGVSIVVEVLTDKINRSVAAVREVVKDY 180
Query: 193 GGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAE 252
GGKMADPGSVMFKF+R RVVNIK T+ADKDQLL IALDAGAEDVIEPP+ EDD DED++E
Sbjct: 181 GGKMADPGSVMFKFKRVRVVNIKVTEADKDQLLAIALDAGAEDVIEPPIYEDDADEDKSE 240
Query: 253 RYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLEL 312
YYKVVS+S+NY +I +KLRE GI FETDNGSELLPITTIEVDDEAM+LNKELI+KLLEL
Sbjct: 241 SYYKVVSSSENYMEILSKLREEGIDFETDNGSELLPITTIEVDDEAMDLNKELISKLLEL 300
Query: 313 DDVDAVYTDQ 322
DDVDAVYTDQ
Sbjct: 301 DDVDAVYTDQ 310
>gi|18400953|ref|NP_565610.1| YebC-related protein [Arabidopsis thaliana]
gi|22096384|sp|O82314.2|U082_ARATH RecName: Full=Probable transcriptional regulatory protein At2g25830
gi|20197365|gb|AAC42247.2| expressed protein [Arabidopsis thaliana]
gi|330252663|gb|AEC07757.1| YebC-related protein [Arabidopsis thaliana]
Length = 331
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 236/336 (70%), Positives = 266/336 (79%), Gaps = 20/336 (5%)
Query: 1 MGSHSSTRAVGAILHRISNGVSSKWSPNSFALSKHGLLSRNLFSSASSISSWIPLYEVKH 60
M SH S R IL R SNGVSS+ NS + H LLS + ++ SS+SS P H
Sbjct: 1 MASHCSMRV---ILLRFSNGVSSRSILNS---TNHRLLSLTMTNTLSSLSSISPHTTTSH 54
Query: 61 ------------C--NFQVRTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVI 106
C Q+R I P+CMGRRSSKIAGRKGAQD+KKAKLY R+GKEV+
Sbjct: 55 FTAASQQSDDQNCFRKLQLRKISISTPLCMGRRSSKIAGRKGAQDSKKAKLYCRIGKEVV 114
Query: 107 SAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGG 166
SAVKKGGPNP SNT LA +L+KAKELDVPKDIVERNIKRASEKGQEAFIEK+YEVYGYGG
Sbjct: 115 SAVKKGGPNPVSNTTLATILDKAKELDVPKDIVERNIKRASEKGQEAFIEKIYEVYGYGG 174
Query: 167 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 226
VS+VVEVLTDKI RSVAA+R VVKD GGKMAD GSVMFKF+R RVVNIK T+ADKDQLL
Sbjct: 175 VSMVVEVLTDKINRSVAAIRSVVKDYGGKMADSGSVMFKFKRVRVVNIKVTEADKDQLLI 234
Query: 227 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 286
IALDAGAEDVIEPP EDDTDEDR ERYYK+V++++NY+ I +KLR+ G+ FE DNGSEL
Sbjct: 235 IALDAGAEDVIEPPTYEDDTDEDREERYYKIVTSNENYSTILSKLRDEGVNFEPDNGSEL 294
Query: 287 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 322
LP+TT+EVDDEAMELNKEL+ KLLELDDVDAVY DQ
Sbjct: 295 LPLTTVEVDDEAMELNKELMQKLLELDDVDAVYIDQ 330
>gi|297825653|ref|XP_002880709.1| hypothetical protein ARALYDRAFT_320374 [Arabidopsis lyrata subsp.
lyrata]
gi|297326548|gb|EFH56968.1| hypothetical protein ARALYDRAFT_320374 [Arabidopsis lyrata subsp.
lyrata]
Length = 327
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 242/335 (72%), Positives = 271/335 (80%), Gaps = 22/335 (6%)
Query: 1 MGSHSSTRAVGAILHRISNGVSSKWSPNSFALSKHGLLSRNLFSSASSISSWIPLYEVKH 60
M SH S RA ILHR SNGVSS+ NS +KH LL+ + +S SS+SS P + H
Sbjct: 1 MASHCSMRA---ILHRFSNGVSSRSILNS---TKHRLLT--MTNSLSSLSSISP-HTTSH 51
Query: 61 -----------C--NFQVRTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVIS 107
C QVR I P+CMGRRSSKIAGRKGAQD+KKAKLY R+GKEV+S
Sbjct: 52 FTASQQSDDENCFRKLQVRKISISTPLCMGRRSSKIAGRKGAQDSKKAKLYCRIGKEVVS 111
Query: 108 AVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGV 167
AVKKGGPNP SNT LA +L+KAKELDVPKDIVERNIKRASEKGQEAFIEK+YEVYGYGGV
Sbjct: 112 AVKKGGPNPVSNTTLATILDKAKELDVPKDIVERNIKRASEKGQEAFIEKIYEVYGYGGV 171
Query: 168 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 227
S+VVEVLTDKI RSVAA+R VVKD GGKMAD GSVMFKFRR RVVNIK T+ADKDQLL+I
Sbjct: 172 SMVVEVLTDKINRSVAAIRSVVKDYGGKMADSGSVMFKFRRVRVVNIKVTEADKDQLLNI 231
Query: 228 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 287
ALDAGAEDVIEPP EDDTDEDR ERYYK+V++S+NY+ I +KLR+ G+ FE DNGSELL
Sbjct: 232 ALDAGAEDVIEPPTYEDDTDEDREERYYKIVTSSENYSTILSKLRDEGVNFEPDNGSELL 291
Query: 288 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 322
P+TT+EVDDEAMELNKEL+ KLLELDDVDAVY DQ
Sbjct: 292 PLTTVEVDDEAMELNKELMQKLLELDDVDAVYIDQ 326
>gi|15810383|gb|AAL07079.1| unknown protein [Arabidopsis thaliana]
gi|21281203|gb|AAM45134.1| unknown protein [Arabidopsis thaliana]
Length = 330
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 235/336 (69%), Positives = 265/336 (78%), Gaps = 21/336 (6%)
Query: 1 MGSHSSTRAVGAILHRISNGVSSKWSPNSFALSKHGLLSRNLFSSASSISSWIPLYEVKH 60
M SH S R IL R SNGVSS+ NS + H LLS + ++ SS+SS P H
Sbjct: 1 MASHCSMRV---ILLRFSNGVSSRSILNS---TNHRLLSLTMTNTLSSLSSISPHTTTSH 54
Query: 61 ------------C--NFQVRTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVI 106
C Q+R I P+CMGR SSKIAGRKGAQD+KKAKLY R+GKEV+
Sbjct: 55 FTAASQQSDDQNCFRKLQLRKISISTPLCMGR-SSKIAGRKGAQDSKKAKLYCRIGKEVV 113
Query: 107 SAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGG 166
SAVKKGGPNP SNT LA +L+KAKELDVPKDIVERNIKRASEKGQEAFIEK+YEVYGYGG
Sbjct: 114 SAVKKGGPNPVSNTTLATILDKAKELDVPKDIVERNIKRASEKGQEAFIEKIYEVYGYGG 173
Query: 167 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 226
VS+VVEVLTDKI RSVAA+R VVKD GGKMAD GSVMFKF+R RVVNIK T+ADKDQLL
Sbjct: 174 VSMVVEVLTDKINRSVAAIRSVVKDYGGKMADSGSVMFKFKRVRVVNIKVTEADKDQLLI 233
Query: 227 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 286
IALDAGAEDVIEPP EDDTDEDR ERYYK+V++++NY+ I +KLR+ G+ FE DNGSEL
Sbjct: 234 IALDAGAEDVIEPPTYEDDTDEDREERYYKIVTSNENYSTILSKLRDEGVNFEPDNGSEL 293
Query: 287 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 322
LP+TT+EVDDEAMELNKEL+ KLLELDDVDAVY DQ
Sbjct: 294 LPLTTVEVDDEAMELNKELMQKLLELDDVDAVYIDQ 329
>gi|224089014|ref|XP_002308602.1| predicted protein [Populus trichocarpa]
gi|222854578|gb|EEE92125.1| predicted protein [Populus trichocarpa]
Length = 292
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 216/273 (79%), Positives = 238/273 (87%), Gaps = 6/273 (2%)
Query: 56 YEVKH---CNFQVRTIR---TFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAV 109
YE KH +QV+ +R TF PVCMGRRS KIAGRKGAQDAKKAKLY R+GKEV+SAV
Sbjct: 19 YEEKHRDSSGYQVKNVRKIWTFPPVCMGRRSCKIAGRKGAQDAKKAKLYCRIGKEVVSAV 78
Query: 110 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSI 169
KKGGPNP SNT LAA+++K KELDVPK+I+ERNIKRASEKGQEAFIEK+YEVYG GGVSI
Sbjct: 79 KKGGPNPESNTALAALIDKFKELDVPKEILERNIKRASEKGQEAFIEKIYEVYGLGGVSI 138
Query: 170 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIAL 229
VVEV TDKI RSVA +REVVKD GGKMADPGSV+FKFRRARVVNIK TDAD+DQLL IAL
Sbjct: 139 VVEVSTDKIKRSVAVIREVVKDYGGKMADPGSVLFKFRRARVVNIKVTDADRDQLLGIAL 198
Query: 230 DAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPI 289
DAGAEDVIEPP EDD+DEDR+E YYKVVS ++NY I +KLR GI FETDNGSELLPI
Sbjct: 199 DAGAEDVIEPPTYEDDSDEDRSESYYKVVSPAENYAAILSKLRNEGISFETDNGSELLPI 258
Query: 290 TTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 322
T IEVDDEA+ELNK L++KLLELDDVDAVYTDQ
Sbjct: 259 TPIEVDDEAVELNKVLMSKLLELDDVDAVYTDQ 291
>gi|356515613|ref|XP_003526493.1| PREDICTED: UPF0082 protein At2g25830-like isoform 2 [Glycine max]
Length = 306
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 215/292 (73%), Positives = 245/292 (83%), Gaps = 8/292 (2%)
Query: 39 SRNLFSSASSISSWIPLYEVKHCNFQVRTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLY 98
SR SS++ + ++ N QVR I + PVCMGRRSSKIAGRKGAQDAKKAKLY
Sbjct: 14 SRVSLSSSTFVRGKSLWFDANRDNSQVRRIWSSTPVCMGRRSSKIAGRKGAQDAKKAKLY 73
Query: 99 SRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV 158
SR+GKEV+SAVK+GGPN TSN+VLAAVLEKAKELDVPKDIVERN+KRASEKGQEA+IEKV
Sbjct: 74 SRIGKEVVSAVKRGGPNVTSNSVLAAVLEKAKELDVPKDIVERNMKRASEKGQEAYIEKV 133
Query: 159 YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTD 218
YEVYGYGGVS+VVEV TDKI RSVA +REV+KD GGKMAD GSV FKF+R RVVNIK T+
Sbjct: 134 YEVYGYGGVSMVVEVSTDKIHRSVAKIREVIKDYGGKMADSGSVTFKFKRVRVVNIKATN 193
Query: 219 ADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAE--------RYYKVVSTSDNYTDITTK 270
ADKDQLL IALDAGAEDVI+PP EDDT+EDR++ RYYK+V +S+NY+ I +K
Sbjct: 194 ADKDQLLAIALDAGAEDVIDPPTYEDDTEEDRSDKFILFHFVRYYKIVGSSENYSSILSK 253
Query: 271 LREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 322
LRE GI FE DNGSELLP T +EVDDEAM+LNKEL++KLLELDDVDAVYTDQ
Sbjct: 254 LREEGIDFEPDNGSELLPNTPVEVDDEAMDLNKELMSKLLELDDVDAVYTDQ 305
>gi|356515611|ref|XP_003526492.1| PREDICTED: UPF0082 protein At2g25830-like isoform 1 [Glycine max]
Length = 295
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 214/284 (75%), Positives = 242/284 (85%), Gaps = 3/284 (1%)
Query: 39 SRNLFSSASSISSWIPLYEVKHCNFQVRTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLY 98
SR SS++ + ++ N QVR I + PVCMGRRSSKIAGRKGAQDAKKAKLY
Sbjct: 14 SRVSLSSSTFVRGKSLWFDANRDNSQVRRIWSSTPVCMGRRSSKIAGRKGAQDAKKAKLY 73
Query: 99 SRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV 158
SR+GKEV+SAVK+GGPN TSN+VLAAVLEKAKELDVPKDIVERN+KRASEKGQEA+IEKV
Sbjct: 74 SRIGKEVVSAVKRGGPNVTSNSVLAAVLEKAKELDVPKDIVERNMKRASEKGQEAYIEKV 133
Query: 159 YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTD 218
YEVYGYGGVS+VVEV TDKI RSVA +REV+KD GGKMAD GSV FKF+R RVVNIK T+
Sbjct: 134 YEVYGYGGVSMVVEVSTDKIHRSVAKIREVIKDYGGKMADSGSVTFKFKRVRVVNIKATN 193
Query: 219 ADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPF 278
ADKDQLL IALDAGAEDVI+PP EDDT+ED RYYK+V +S+NY+ I +KLRE GI F
Sbjct: 194 ADKDQLLAIALDAGAEDVIDPPTYEDDTEED---RYYKIVGSSENYSSILSKLREEGIDF 250
Query: 279 ETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 322
E DNGSELLP T +EVDDEAM+LNKEL++KLLELDDVDAVYTDQ
Sbjct: 251 EPDNGSELLPNTPVEVDDEAMDLNKELMSKLLELDDVDAVYTDQ 294
>gi|449461317|ref|XP_004148388.1| PREDICTED: probable transcriptional regulatory protein
At2g25830-like [Cucumis sativus]
Length = 320
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 215/321 (66%), Positives = 254/321 (79%), Gaps = 8/321 (2%)
Query: 6 STRAVGAILHRIS-NGVSSKWSPNSFALSKHGLLSRNLFSSASSISS---WIPLYEVKHC 61
S +A G IL R N + K SP F H + S A+ SS W E+K
Sbjct: 3 SLQAFGVILKRFPLNSIIHK-SPRFF--HPHSSGLCSSSSLAAVTSSSPLWAFDSELKSR 59
Query: 62 NFQVRTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTV 121
QVR I +PVCMGRRS KIAGRKGAQDAKKAKLY+R+GKEV+SA K+GG NPTSN +
Sbjct: 60 GNQVRRI-WMSPVCMGRRSCKIAGRKGAQDAKKAKLYARIGKEVVSACKRGGTNPTSNPL 118
Query: 122 LAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRS 181
L +LEK KELD+PK+I +RNIKRASEKGQEA+IEK YEVYGYGG S+VVEV TDK+ RS
Sbjct: 119 LTTLLEKIKELDIPKEIFDRNIKRASEKGQEAYIEKTYEVYGYGGASMVVEVSTDKVNRS 178
Query: 182 VAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPV 241
VAAVREV+KD GGKMAD GSVMFKFRRARVVN+K ++ DKDQLL+I+LDAGAEDVIEPP
Sbjct: 179 VAAVREVLKDYGGKMADSGSVMFKFRRARVVNVKASNVDKDQLLNISLDAGAEDVIEPPE 238
Query: 242 NEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMEL 301
EDDT+ED++ERYYK+V++++NY+ I +KLRE I FETD GSELLP+++IEVDDEAM+L
Sbjct: 239 YEDDTEEDKSERYYKIVTSTENYSGILSKLREENIKFETDGGSELLPMSSIEVDDEAMDL 298
Query: 302 NKELIAKLLELDDVDAVYTDQ 322
NKEL+ KLLELDDVDAVYTDQ
Sbjct: 299 NKELMDKLLELDDVDAVYTDQ 319
>gi|357466655|ref|XP_003603612.1| hypothetical protein MTR_3g109620 [Medicago truncatula]
gi|355492660|gb|AES73863.1| hypothetical protein MTR_3g109620 [Medicago truncatula]
Length = 346
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 218/341 (63%), Positives = 250/341 (73%), Gaps = 49/341 (14%)
Query: 31 ALSKHGLLSRNLFSSASSISSWIPLYEVKHC-----------NF-------------QVR 66
ALS H +R +FS+ S SS+ L+ H NF + R
Sbjct: 5 ALSLHAFSTRGVFSTRLSSSSFFLLHRNIHIISPSLLDANVINFTNYHNDNNRRVRVRRR 64
Query: 67 TIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVL 126
TI T P+CMGRRS KIAGRK A +AKK KLYSR+GKEV+SAVKKGGPN TSN+ LAAVL
Sbjct: 65 TIWTSTPLCMGRRSCKIAGRKEANNAKKMKLYSRIGKEVVSAVKKGGPNVTSNSALAAVL 124
Query: 127 EKAKELDVPKDIVERNIKRASEKGQEAFIEKVYE-------------------------V 161
EK KELDVPKDIVERNIK+A+EKGQE +IEK+YE V
Sbjct: 125 EKVKELDVPKDIVERNIKKATEKGQEDYIEKIYEGNQLCLVNVLGYKIGYGTGPATPEWV 184
Query: 162 YGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADK 221
YGYGGVS+VVEV TDKITRSVA +REV+KD GGKMAD GSV+FKFRRARVV+IK T+ADK
Sbjct: 185 YGYGGVSMVVEVSTDKITRSVAKIREVIKDYGGKMADSGSVLFKFRRARVVSIKVTNADK 244
Query: 222 DQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETD 281
D LL IALDAGAEDVI+PP EDDT+EDR+ERYYK+V +S+NY+ I +KLRE GI FE D
Sbjct: 245 DHLLGIALDAGAEDVIDPPTYEDDTEEDRSERYYKIVGSSENYSSILSKLREEGIEFEPD 304
Query: 282 NGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 322
NGSELLP TTIEVDDEAM+LNKEL++KLLELDDVDAVYTDQ
Sbjct: 305 NGSELLPNTTIEVDDEAMDLNKELMSKLLELDDVDAVYTDQ 345
>gi|388519457|gb|AFK47790.1| unknown [Lotus japonicus]
Length = 312
Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust.
Identities = 214/309 (69%), Positives = 248/309 (80%), Gaps = 7/309 (2%)
Query: 14 LHRISNGVSSKWSPNSFALSKHGLLSRNLFSSASSISSWIPLYEVKHCNFQVRTIRTFAP 73
L+ +SN VSS + H L L A++ +++ + QVR I T +
Sbjct: 10 LNTLSNLVSSTRLTLHLPRNNHVLNKSLLLWDATANATFT-------GSSQVRKISTTSF 62
Query: 74 VCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELD 133
VCMGRRSSKIA RKG QD K+AKLYSR+GK+V+SAVKKGGPN +N+ LAAVLEKAKELD
Sbjct: 63 VCMGRRSSKIARRKGTQDVKRAKLYSRIGKKVVSAVKKGGPNVATNSDLAAVLEKAKELD 122
Query: 134 VPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCG 193
VPKDI+ERNIKRASEKGQEA+IEK YEVYGYGGVSIVVEV TDKI RSVA +REVV+D G
Sbjct: 123 VPKDIIERNIKRASEKGQEAYIEKTYEVYGYGGVSIVVEVSTDKINRSVAKIREVVRDYG 182
Query: 194 GKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAER 253
GKMADPGSVMFKFRRARVVNIK T+ADKDQLL IALDAGAEDVI+PP E+DT+ED +ER
Sbjct: 183 GKMADPGSVMFKFRRARVVNIKVTNADKDQLLAIALDAGAEDVIDPPTYEEDTEEDESER 242
Query: 254 YYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELD 313
YYK+V +S+NY+ I +KLRE GI F D+GSELLP TIEVDDEAM+LNKEL++ LLELD
Sbjct: 243 YYKIVGSSENYSSILSKLREEGIDFVPDSGSELLPNATIEVDDEAMDLNKELMSNLLELD 302
Query: 314 DVDAVYTDQ 322
DVDAVYTDQ
Sbjct: 303 DVDAVYTDQ 311
>gi|356510029|ref|XP_003523743.1| PREDICTED: UPF0082 protein At2g25830-like [Glycine max]
Length = 288
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 197/291 (67%), Positives = 233/291 (80%), Gaps = 8/291 (2%)
Query: 32 LSKHGLLSRNLFSSASSISSWIPLYEVKHCNFQVRTIRTFAPVCMGRRSSKIAGRKGAQD 91
L L +R S ++ + ++ N QVR I PVCMGRRS KIAGRKGAQD
Sbjct: 5 LQLQALTARLSLSPSNFVRRKSLWFDANRDNSQVRRIWPSTPVCMGRRSIKIAGRKGAQD 64
Query: 92 AKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQ 151
AKK KLYSR+GKEV+SAVK+GGPN TS++VLAAVL KAKELD+PKDIV+RNIKRA+EKGQ
Sbjct: 65 AKKTKLYSRIGKEVVSAVKRGGPNVTSDSVLAAVLGKAKELDLPKDIVDRNIKRANEKGQ 124
Query: 152 EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARV 211
EA+IEK Y+VYGYGGVS+VVEV TDK+ RSV +REV++D GGKMAD GSV FKF+R R+
Sbjct: 125 EAYIEKAYKVYGYGGVSMVVEVSTDKVHRSVTKIREVIRDYGGKMADSGSVTFKFKRVRL 184
Query: 212 VNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKL 271
VNIK T+ADKDQLL IALDAGAEDVIEPP EDDT+EDR+ERYYK+V +S+N++ I +KL
Sbjct: 185 VNIKATNADKDQLLAIALDAGAEDVIEPPTYEDDTEEDRSERYYKIVGSSENFSFIPSKL 244
Query: 272 REAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 322
R DN SELLP T + VDDEAM+LNKEL++KLLELDDVDAVYTDQ
Sbjct: 245 R--------DNSSELLPNTLVVVDDEAMDLNKELMSKLLELDDVDAVYTDQ 287
>gi|357132928|ref|XP_003568080.1| PREDICTED: UPF0082 protein At2g25830-like isoform 1 [Brachypodium
distachyon]
Length = 307
Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust.
Identities = 180/257 (70%), Positives = 219/257 (85%)
Query: 66 RTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAV 125
R I TF P+CMGRRS KIAGRK AQ+ KK K S++GKE+++A+ KGGPNP+SNT LAA+
Sbjct: 50 RRIWTFQPLCMGRRSCKIAGRKDAQNLKKMKRNSKIGKEIVAAINKGGPNPSSNTALAAI 109
Query: 126 LEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAV 185
LEK +ELDVPK++VERN+KRASEKGQ+ + EKVYEVYG+GGV +VVEVLTDKITRS+A +
Sbjct: 110 LEKVRELDVPKEVVERNMKRASEKGQDTYTEKVYEVYGFGGVGMVVEVLTDKITRSIADI 169
Query: 186 REVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDD 245
R VVKDC K+ADPGSV F+FR+ RVVNIK TDADKD+LL +ALDAGA+DVIEP + DD
Sbjct: 170 RNVVKDCAAKLADPGSVTFRFRQVRVVNIKVTDADKDELLSVALDAGADDVIEPNFDYDD 229
Query: 246 TDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKEL 305
E+ ER+YK+V+TS+NY + +KL+E GI FETDNG ELLP+ IEVDDEAMELNK+L
Sbjct: 230 DSEEVTERFYKIVTTSENYPVVLSKLQEEGIKFETDNGYELLPLNPIEVDDEAMELNKDL 289
Query: 306 IAKLLELDDVDAVYTDQ 322
++KLLELDDVDAVYTDQ
Sbjct: 290 VSKLLELDDVDAVYTDQ 306
>gi|357132930|ref|XP_003568081.1| PREDICTED: UPF0082 protein At2g25830-like isoform 2 [Brachypodium
distachyon]
Length = 305
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/257 (70%), Positives = 219/257 (85%)
Query: 66 RTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAV 125
R I TF P+CMGRRS KIAGRK AQ+ KK K S++GKE+++A+ KGGPNP+SNT LAA+
Sbjct: 48 RRIWTFQPLCMGRRSCKIAGRKDAQNLKKMKRNSKIGKEIVAAINKGGPNPSSNTALAAI 107
Query: 126 LEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAV 185
LEK +ELDVPK++VERN+KRASEKGQ+ + EKVYEVYG+GGV +VVEVLTDKITRS+A +
Sbjct: 108 LEKVRELDVPKEVVERNMKRASEKGQDTYTEKVYEVYGFGGVGMVVEVLTDKITRSIADI 167
Query: 186 REVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDD 245
R VVKDC K+ADPGSV F+FR+ RVVNIK TDADKD+LL +ALDAGA+DVIEP + DD
Sbjct: 168 RNVVKDCAAKLADPGSVTFRFRQVRVVNIKVTDADKDELLSVALDAGADDVIEPNFDYDD 227
Query: 246 TDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKEL 305
E+ ER+YK+V+TS+NY + +KL+E GI FETDNG ELLP+ IEVDDEAMELNK+L
Sbjct: 228 DSEEVTERFYKIVTTSENYPVVLSKLQEEGIKFETDNGYELLPLNPIEVDDEAMELNKDL 287
Query: 306 IAKLLELDDVDAVYTDQ 322
++KLLELDDVDAVYTDQ
Sbjct: 288 VSKLLELDDVDAVYTDQ 304
>gi|218197116|gb|EEC79543.1| hypothetical protein OsI_20657 [Oryza sativa Indica Group]
Length = 317
Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust.
Identities = 184/266 (69%), Positives = 224/266 (84%), Gaps = 9/266 (3%)
Query: 66 RTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAV 125
R I TF P+CMGRRS KIAGRK AQ+ KK K S++GKE+++A+KKGGP+P+SNT LAA+
Sbjct: 51 RRISTFQPLCMGRRSCKIAGRKDAQNLKKMKRNSKIGKEIVAAIKKGGPSPSSNTTLAAI 110
Query: 126 LEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAV 185
LEKA+ELD+PK+I+ERNIKRASEKGQ+ + EKVYEVYG+GGV +VVEVLTDKITRS+A +
Sbjct: 111 LEKARELDIPKEILERNIKRASEKGQDTYTEKVYEVYGFGGVGMVVEVLTDKITRSIADI 170
Query: 186 REVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPV---- 241
R VVKDCG K+ADPGSV F+FR+ARVVNIK TDADKDQLL +ALDAGA+DVIEP
Sbjct: 171 RNVVKDCGAKLADPGSVTFRFRQARVVNIKVTDADKDQLLTVALDAGADDVIEPNFDDDD 230
Query: 242 -----NEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDD 296
+DD+ ED +ER+YK+V+TS+NY + +KL+E G+ FETDNG ELLP+ IEVDD
Sbjct: 231 DDDDDYDDDSSEDVSERFYKIVTTSENYPVVLSKLQEEGLKFETDNGYELLPLNPIEVDD 290
Query: 297 EAMELNKELIAKLLELDDVDAVYTDQ 322
EAMELNK L++KLLELDDVDAVYTDQ
Sbjct: 291 EAMELNKVLVSKLLELDDVDAVYTDQ 316
>gi|115464935|ref|NP_001056067.1| Os05g0519800 [Oryza sativa Japonica Group]
gi|50080324|gb|AAT69658.1| unknown protein [Oryza sativa Japonica Group]
gi|52353700|gb|AAU44266.1| unknown protein [Oryza sativa Japonica Group]
gi|113579618|dbj|BAF17981.1| Os05g0519800 [Oryza sativa Japonica Group]
gi|215697437|dbj|BAG91431.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222632259|gb|EEE64391.1| hypothetical protein OsJ_19233 [Oryza sativa Japonica Group]
Length = 317
Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust.
Identities = 184/266 (69%), Positives = 224/266 (84%), Gaps = 9/266 (3%)
Query: 66 RTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAV 125
R I TF P+CMGRRS KIAGRK AQ+ KK K S++GKE+++A+KKGGP+P+SNT LAA+
Sbjct: 51 RRISTFQPLCMGRRSCKIAGRKDAQNLKKMKRNSKIGKEIVAAIKKGGPSPSSNTTLAAI 110
Query: 126 LEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAV 185
LEKA+ELD+PK+I+ERNIKRASEKGQ+ + EKVYEVYG+GGV +VVEVLTDKITRS+A +
Sbjct: 111 LEKARELDIPKEILERNIKRASEKGQDTYTEKVYEVYGFGGVGMVVEVLTDKITRSIADI 170
Query: 186 REVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPV---- 241
R VVKDCG K+ADPGSV F+FR+ARVVNIK TDADKDQLL +ALDAGA+DVIEP
Sbjct: 171 RNVVKDCGAKLADPGSVTFRFRQARVVNIKVTDADKDQLLTVALDAGADDVIEPNFDDDD 230
Query: 242 -----NEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDD 296
+DD+ ED +ER+YK+V+TS+NY + +KL+E G+ FETDNG ELLP+ IEVDD
Sbjct: 231 DDDDDYDDDSSEDVSERFYKIVTTSENYPVVLSKLQEEGLKFETDNGYELLPLNPIEVDD 290
Query: 297 EAMELNKELIAKLLELDDVDAVYTDQ 322
EAMELNK L++KLLELDDVDAVYTDQ
Sbjct: 291 EAMELNKVLVSKLLELDDVDAVYTDQ 316
>gi|242088521|ref|XP_002440093.1| hypothetical protein SORBIDRAFT_09g025910 [Sorghum bicolor]
gi|241945378|gb|EES18523.1| hypothetical protein SORBIDRAFT_09g025910 [Sorghum bicolor]
Length = 303
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 199/322 (61%), Positives = 244/322 (75%), Gaps = 26/322 (8%)
Query: 5 SSTRAVGAILHRISNGVSSKWSPNSFALSKH----GLLSRNLFSSASSISSWIPLYEVKH 60
S+ RA+GA+LHR S SS + +L + GL R+
Sbjct: 3 STARALGALLHRASFLSSSASALRGASLLRGDRPIGLFRRHAAR---------------- 46
Query: 61 CNFQVRTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNT 120
R I +F P+CMGRRS KIAGRK AQ+ KK K S++GKE+++A+KKGGPNP+SNT
Sbjct: 47 -----RRISSFQPLCMGRRSCKIAGRKDAQNLKKMKRNSKIGKEIVAAIKKGGPNPSSNT 101
Query: 121 VLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITR 180
LAA+LEKA+ELDVP +I+ERNIKRASEKGQ+ + EKVYEVYG+GGV +VVEVLTDKITR
Sbjct: 102 TLAAILEKARELDVPNEILERNIKRASEKGQDTYTEKVYEVYGFGGVGMVVEVLTDKITR 161
Query: 181 SVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPP 240
SVA +R VVKDCG K+ADPGSV F+FR+ARVVNIK TDADKDQLL IALDAGA+DV+EP
Sbjct: 162 SVADIRNVVKDCGAKLADPGSVTFRFRQARVVNIKVTDADKDQLLTIALDAGADDVLEPN 221
Query: 241 VNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAME 300
++ D E+ AER+YK+V+TS+NY + +KL+E G+ FETDNG ELLP+ IEVDDEAME
Sbjct: 222 FDD-DDSEEEAERFYKIVTTSENYPVVLSKLQEEGLKFETDNGYELLPLNPIEVDDEAME 280
Query: 301 LNKELIAKLLELDDVDAVYTDQ 322
LNKEL++KLLELDDVDAVY DQ
Sbjct: 281 LNKELVSKLLELDDVDAVYADQ 302
>gi|326518252|dbj|BAK07378.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 308
Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust.
Identities = 182/258 (70%), Positives = 222/258 (86%), Gaps = 1/258 (0%)
Query: 66 RTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAV 125
R I TF P+CMGRRS KIAGRKGAQ+ KK K S++GKE+++A+KKGGP+P+SNT LAA+
Sbjct: 50 RRIWTFQPLCMGRRSCKIAGRKGAQNLKKMKRNSKIGKEIVAAIKKGGPSPSSNTALAAL 109
Query: 126 LEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAV 185
LEK +ELDVPK++VERNIKRASEKGQ+ + EK YEVYG+GGV +VVEVLTDKITRS+A +
Sbjct: 110 LEKVRELDVPKEVVERNIKRASEKGQDTYTEKNYEVYGFGGVGMVVEVLTDKITRSIADI 169
Query: 186 REVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDD 245
R VVKDCG K+ADPGSV F+FR+ARVVNIK TDADKDQLL +ALDAGA+DVIEP +++D
Sbjct: 170 RNVVKDCGAKLADPGSVTFRFRQARVVNIKVTDADKDQLLSVALDAGADDVIEPNFDDED 229
Query: 246 TDEDRA-ERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKE 304
E+ ER+YK+V+TS+NY + +KL+E G+ FETDNG ELLP+ IEVDDEAMELNK+
Sbjct: 230 DSEEEVLERFYKIVTTSENYPVVLSKLQEEGLKFETDNGYELLPLNPIEVDDEAMELNKD 289
Query: 305 LIAKLLELDDVDAVYTDQ 322
L+ KLLELDDVDAVYTDQ
Sbjct: 290 LVCKLLELDDVDAVYTDQ 307
>gi|223942609|gb|ACN25388.1| unknown [Zea mays]
gi|413946194|gb|AFW78843.1| hypothetical protein ZEAMMB73_559026 [Zea mays]
Length = 306
Score = 367 bits (941), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 180/257 (70%), Positives = 223/257 (86%), Gaps = 1/257 (0%)
Query: 66 RTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAV 125
R I +F P+CMGRRS KIAGRK AQ+ KK K S++GKE+++A+KKGGPNP+SNT L+A+
Sbjct: 50 RRISSFQPLCMGRRSCKIAGRKDAQNLKKMKRNSKIGKEIVAAIKKGGPNPSSNTTLSAI 109
Query: 126 LEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAV 185
LEKA+ELDVP++I+ERNIKRASEKGQ+ + EKVYEVYG+GGV +VVEVLTDKITRSVA +
Sbjct: 110 LEKARELDVPREILERNIKRASEKGQDTYTEKVYEVYGFGGVGMVVEVLTDKITRSVADI 169
Query: 186 REVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDD 245
R VVKDCG K+ADPGSV F+FR+ARVVNIK TDADKDQLL +ALDAGA+DV+EP ++ D
Sbjct: 170 RNVVKDCGAKLADPGSVTFRFRQARVVNIKVTDADKDQLLTVALDAGADDVLEPNFDD-D 228
Query: 246 TDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKEL 305
E+ AER+YK+V+TS+NY + +KL+E G+ FETDNG EL+P+ IEVDDEA+ELNKEL
Sbjct: 229 DSEEEAERFYKIVTTSENYPVLLSKLQEEGLKFETDNGYELVPLNPIEVDDEAVELNKEL 288
Query: 306 IAKLLELDDVDAVYTDQ 322
++ LLELDDVDAVYTDQ
Sbjct: 289 VSNLLELDDVDAVYTDQ 305
>gi|449507300|ref|XP_004162992.1| PREDICTED: probable transcriptional regulatory protein
At2g25830-like, partial [Cucumis sativus]
Length = 362
Score = 357 bits (917), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 189/293 (64%), Positives = 226/293 (77%), Gaps = 8/293 (2%)
Query: 6 STRAVGAILHRIS-NGVSSKWSPNSFALSKHGLLSRNLFSSASSISS---WIPLYEVKHC 61
S +A G IL R N + K SP F H + S A+ SS W E+K
Sbjct: 3 SLQAFGVILKRFPLNSIIHK-SPRFF--HPHSSGLCSSSSLAAVTSSSPLWAFDSELKSR 59
Query: 62 NFQVRTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTV 121
QVR I +PVCMGRRS KIAGRKGAQDAKKAKLY+R+GKEV+SA K+GG NPTSN +
Sbjct: 60 GNQVRRI-WMSPVCMGRRSCKIAGRKGAQDAKKAKLYARIGKEVVSACKRGGTNPTSNPL 118
Query: 122 LAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRS 181
L +LEK KELD+PK+I +RNIKRASEKGQEA+IEK YEVYGYGG S+VVEV TDK+ RS
Sbjct: 119 LTTLLEKIKELDIPKEIFDRNIKRASEKGQEAYIEKTYEVYGYGGASMVVEVSTDKVNRS 178
Query: 182 VAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPV 241
VAAVREV+KD GGKMAD GSVMFKFRRARVVN+K ++ DKDQLL+I+LDAGAEDVIEPP
Sbjct: 179 VAAVREVLKDYGGKMADSGSVMFKFRRARVVNVKASNVDKDQLLNISLDAGAEDVIEPPE 238
Query: 242 NEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEV 294
EDDT+ED++ERYYK+V++++NY+ I +KLRE I FETD GSELLP+++IE
Sbjct: 239 YEDDTEEDKSERYYKIVTSTENYSGILSKLREENIKFETDGGSELLPMSSIEF 291
>gi|302804755|ref|XP_002984129.1| hypothetical protein SELMODRAFT_156357 [Selaginella moellendorffii]
gi|300147978|gb|EFJ14639.1| hypothetical protein SELMODRAFT_156357 [Selaginella moellendorffii]
Length = 255
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 132/250 (52%), Positives = 183/250 (73%), Gaps = 3/250 (1%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGRRSSKIA RKGAQ A+K K R+GK++ AV+ GGPNP SN VLA++L++A+E + P
Sbjct: 1 MGRRSSKIAARKGAQAARKMKRNQRIGKQIAKAVRDGGPNPASNLVLASLLQQARECNYP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K+ +++++++A++K Q+ + E +YE YG+GGV +V+E LTD R+ A++R+VVK G K
Sbjct: 61 KEHIDKHLRKATDKDQQDYTECIYEAYGFGGVGLVMEALTDNPNRAFASIRDVVKKSGAK 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEP-PVNEDDTDEDRA-ER 253
MAD GSVMF F+RA V+ ++ D D LL A+DAGAED+I P P +E+DTDE A ER
Sbjct: 121 MADSGSVMFGFKRAGVIAVRPGKVDADHLLLAAMDAGAEDLIGPEPCHEEDTDESAAEER 180
Query: 254 YYKVVSTSDNYTDITTKLREAGIPFETD-NGSELLPITTIEVDDEAMELNKELIAKLLEL 312
+YKVV + + + TKL EAGI + + +G E LP+ +EVDDEAMELN+ L LLEL
Sbjct: 181 HYKVVMPVEEFGAVKTKLSEAGISMDLESSGLEFLPVAPVEVDDEAMELNRALTDMLLEL 240
Query: 313 DDVDAVYTDQ 322
+DVDAVY+ Q
Sbjct: 241 EDVDAVYSTQ 250
>gi|302780884|ref|XP_002972216.1| hypothetical protein SELMODRAFT_172623 [Selaginella moellendorffii]
gi|300159683|gb|EFJ26302.1| hypothetical protein SELMODRAFT_172623 [Selaginella moellendorffii]
Length = 255
Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 131/250 (52%), Positives = 182/250 (72%), Gaps = 3/250 (1%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGRRSSKIA RKGAQ A+K K R+GK++ AV+ GGPNP SN VLA++L++A+E + P
Sbjct: 1 MGRRSSKIAARKGAQAARKMKRNQRIGKQIAKAVRDGGPNPASNLVLASLLQQARECNYP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K+ +++++++A++K Q+ + E +YE YG+GGV +V+E LTD R+ A++R+VVK G K
Sbjct: 61 KEHIDKHLRKATDKDQQDYTECIYEAYGFGGVGLVMEALTDNPNRAFASIRDVVKKSGAK 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEP-PVNEDDTDEDRA-ER 253
MAD GSVMF F+RA V+ ++ D D LL A+DAGAED+I P P +E+DTD A ER
Sbjct: 121 MADSGSVMFGFKRAGVIAVRPDKVDADHLLLAAMDAGAEDLIAPEPCHEEDTDGAAAEER 180
Query: 254 YYKVVSTSDNYTDITTKLREAGIPFETD-NGSELLPITTIEVDDEAMELNKELIAKLLEL 312
+YKVV + + + TKL EAGI + + +G E LP+ +EVDDEAMELN+ L LLEL
Sbjct: 181 HYKVVMPVEEFGAVKTKLSEAGISMDLESSGLEFLPVAPVEVDDEAMELNRALTDMLLEL 240
Query: 313 DDVDAVYTDQ 322
+DVDAVY+ Q
Sbjct: 241 EDVDAVYSTQ 250
>gi|302783743|ref|XP_002973644.1| hypothetical protein SELMODRAFT_99602 [Selaginella moellendorffii]
gi|300158682|gb|EFJ25304.1| hypothetical protein SELMODRAFT_99602 [Selaginella moellendorffii]
Length = 290
Score = 254 bits (649), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 130/258 (50%), Positives = 183/258 (70%), Gaps = 6/258 (2%)
Query: 70 TFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKA 129
T AP+ MGRR+ KIA RK AQ K+ K+ +R+GKE+ A ++GG N +SN LAA+++KA
Sbjct: 32 TSAPLEMGRRACKIADRKAAQGLKRNKVNARLGKEIAQAAREGGTNLSSNLTLAALVQKA 91
Query: 130 KELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVV 189
KEL V KD++ERNIK+A +K Q+ F E YE YG+GGV IVVEVLTD R+ + VR+V+
Sbjct: 92 KELHVSKDLIERNIKKAKDKDQQDFTEITYEAYGFGGVGIVVEVLTDNTNRASSFVRDVI 151
Query: 190 KDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDED 249
K KMA GSV+F F+RA VV +K + D + LL +A++ GAEDV+EP + +D++ E+
Sbjct: 152 KKSHAKMAASGSVLFNFKRAGVVAVK-GNVDSESLLAVAMETGAEDVVEPELEDDESPEE 210
Query: 250 RAE----RYYKVVSTSDNYTDITTKLREAGIPFETDN-GSELLPITTIEVDDEAMELNKE 304
+ RY+KV++ D++ + L++AG + DN G EL+P +EVDDEAME+N+
Sbjct: 211 KKNLVDVRYFKVITAMDDFGRVKAGLKDAGFSIDMDNSGLELVPTDLVEVDDEAMEMNRA 270
Query: 305 LIAKLLELDDVDAVYTDQ 322
LI KLLEL+DVDAVY+ Q
Sbjct: 271 LIDKLLELEDVDAVYSTQ 288
>gi|302802993|ref|XP_002983250.1| hypothetical protein SELMODRAFT_422633 [Selaginella moellendorffii]
gi|300148935|gb|EFJ15592.1| hypothetical protein SELMODRAFT_422633 [Selaginella moellendorffii]
Length = 268
Score = 253 bits (646), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 132/248 (53%), Positives = 176/248 (70%), Gaps = 4/248 (1%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
M RR+ KIA RK AQ ++ K+ +R+ KEV AV++GG N SN LAAVL++A+EL+V
Sbjct: 22 MSRRALKIATRKAAQSLRRDKINNRISKEVAKAVREGGANTASNLQLAAVLQRARELNVS 81
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K+I+ERN+K+A + ++F E +YEV+G+GGV IVVEVLTD RS +REVVK C K
Sbjct: 82 KEIIERNMKKAKDTENQSFSEILYEVFGFGGVGIVVEVLTDNPNRSACQIREVVKKCRAK 141
Query: 196 MADPGSVMFKFRRARVVNIK-FTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERY 254
MA GSV+F F+RA V+ +K D D+L A DAGAEDVIEPP +E+ + ED R
Sbjct: 142 MAGSGSVLFDFKRAGVLCVKAAADVSADELFVAATDAGAEDVIEPPEDEEASLED---RV 198
Query: 255 YKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDD 314
+KV++ +++Y + +KL EAG P D+G EL+ +EVDDEAMELNK L+ KLLELDD
Sbjct: 199 FKVITKAEDYIPVKSKLVEAGFPISVDSGLELVSNAQVEVDDEAMELNKGLMEKLLELDD 258
Query: 315 VDAVYTDQ 322
VDAVY+ Q
Sbjct: 259 VDAVYSSQ 266
>gi|302755764|ref|XP_002961306.1| hypothetical protein SELMODRAFT_437703 [Selaginella moellendorffii]
gi|300172245|gb|EFJ38845.1| hypothetical protein SELMODRAFT_437703 [Selaginella moellendorffii]
Length = 268
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 133/248 (53%), Positives = 176/248 (70%), Gaps = 4/248 (1%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
M RR+ KIA RK AQ ++ K+ +R+ KEV AV++GG N SN LAAVL++A+EL+V
Sbjct: 22 MSRRALKIATRKAAQSLRRDKINNRISKEVAKAVREGGANTASNLQLAAVLQRARELNVS 81
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K+I+ERN+K+A + ++F E +YEV+GYGGV IVVEVLTD RS +REVVK C K
Sbjct: 82 KEIIERNMKKAKDTENQSFSEILYEVFGYGGVGIVVEVLTDNPNRSSCQIREVVKKCRAK 141
Query: 196 MADPGSVMFKFRRARVVNIK-FTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERY 254
MA GSV+F F+RA V+ +K D D+L A DAGAEDVIEPP +E+ + EDR
Sbjct: 142 MAGSGSVLFDFKRAGVLYVKAAADVSADELFVAATDAGAEDVIEPPEDEEASLEDRV--- 198
Query: 255 YKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDD 314
+KV++ +++Y + +KL EAG P D+G EL+ +EVDDEAMELNK L+ KLLELDD
Sbjct: 199 FKVITKAEDYIPVKSKLVEAGFPVGVDSGLELVSNAQVEVDDEAMELNKGLMEKLLELDD 258
Query: 315 VDAVYTDQ 322
VDAVY+ Q
Sbjct: 259 VDAVYSSQ 266
>gi|168016853|ref|XP_001760963.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687972|gb|EDQ74352.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 459
Score = 246 bits (628), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 159/380 (41%), Positives = 226/380 (59%), Gaps = 68/380 (17%)
Query: 5 SSTRAVG--AILHRISNGVSSKWSPNSFALSKHGLLSRNLFSSASSI----------SSW 52
++TR G AILHR + G++ + + + G + ++ SAS + S W
Sbjct: 85 TATRGYGSSAILHRRA-GIARRITCD--GTLPQGNVGKDFSQSASDMQFLGSQREASSMW 141
Query: 53 IPLYEVKHCNFQVRTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVI------ 106
+ + K N R I P MGRRSSKIA +KGAQD KKAKLY +MGK+++
Sbjct: 142 LNVS--KRGNLSSRHIWILPPAQMGRRSSKIATKKGAQDKKKAKLYGKMGKQIVKVYVFH 199
Query: 107 -------------------------------------------SAVKKGGPNPTSNTVLA 123
++VK GGPNP +N LA
Sbjct: 200 LLLFRATVGVNLASLELVYIMPLHVQDSTNCFLSDQGGSVHAFTSVKAGGPNPAANAALA 259
Query: 124 AVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVA 183
++++AK+ DVPKDI++RNIK+A++K Q+ F+E YEVYGYGGV +V+EVLTD R+ +
Sbjct: 260 QLIQQAKDTDVPKDIIDRNIKKATDKDQQDFVELTYEVYGYGGVGLVLEVLTDNHNRAAS 319
Query: 184 AVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNE 243
+R+VVK G KMAD GSV+F F+ A V+ +K + D LL A+DAGAEDV+EP ++
Sbjct: 320 TIRDVVKKNGAKMADSGSVLFNFKSAGVIYVKADKVEADDLLLAAMDAGAEDVVEPS-SD 378
Query: 244 DDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETD-NGSELLPITTIEVDDEAMELN 302
D+ DE+ E+Y+KV++ D + + L+EAG+PF+ D +G EL+P+ IE DDEAM+LN
Sbjct: 379 DEDDEEDDEKYFKVLTPVDQFATVRAGLQEAGVPFDADSSGLELIPVAEIEADDEAMDLN 438
Query: 303 KELIAKLLELDDVDAVYTDQ 322
K LI KLL+LDDVDAVY++Q
Sbjct: 439 KILIEKLLDLDDVDAVYSNQ 458
>gi|302787867|ref|XP_002975703.1| hypothetical protein SELMODRAFT_103622 [Selaginella moellendorffii]
gi|300156704|gb|EFJ23332.1| hypothetical protein SELMODRAFT_103622 [Selaginella moellendorffii]
Length = 253
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 127/252 (50%), Positives = 177/252 (70%), Gaps = 6/252 (2%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGRR+ KIA RK AQ K+ K+ +R+GKE+ A K+GG N +SN LAA++++AKEL V
Sbjct: 1 MGRRACKIADRKAAQGLKRNKVNARLGKEIAQAAKEGGTNLSSNLSLAALVQQAKELHVS 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
KD++ERNIK+A +K Q+ F E YE YG+GGV IVVEVLTD R+ + VR+V+K K
Sbjct: 61 KDLIERNIKKAKDKDQQDFTEITYEAYGFGGVGIVVEVLTDNTNRASSFVRDVIKKSHAK 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAE--- 252
MA GSV+F F+RA VV +K + D + LL A+D GAEDV+EP + + ++ E++
Sbjct: 121 MAASGSVLFNFKRAGVVAVK-GNVDSESLLAAAMDTGAEDVVEPELEDGESPEEKKNLVD 179
Query: 253 -RYYKVVSTSDNYTDITTKLREAGIPFETDN-GSELLPITTIEVDDEAMELNKELIAKLL 310
RY+KV++ D++ + L++AG + DN G EL+P +EVDDEAME+N+ LI KLL
Sbjct: 180 VRYFKVITAMDDFGRVKAGLKDAGFSIDMDNSGLELVPTELVEVDDEAMEMNRALIDKLL 239
Query: 311 ELDDVDAVYTDQ 322
EL+DVDAVY+ Q
Sbjct: 240 ELEDVDAVYSTQ 251
>gi|302787517|ref|XP_002975528.1| hypothetical protein SELMODRAFT_103583 [Selaginella moellendorffii]
gi|300156529|gb|EFJ23157.1| hypothetical protein SELMODRAFT_103583 [Selaginella moellendorffii]
Length = 292
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 127/260 (48%), Positives = 179/260 (68%), Gaps = 8/260 (3%)
Query: 70 TFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKA 129
T AP+ MGRR+ KIA RK AQ K+ K+ +R+GKE+ A ++GG N +SN LAA+++KA
Sbjct: 32 TSAPLEMGRRACKIADRKAAQGLKRNKVNARLGKEIAQAAREGGTNLSSNLTLAALVQKA 91
Query: 130 KELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVV 189
KEL V KD++ERNIK+A +K Q+ F E YE YG+GGV IVVEVLTD R+ + VR+V+
Sbjct: 92 KELHVSKDLIERNIKKAKDKDQQDFTEITYEAYGFGGVGIVVEVLTDNTNRASSFVRDVI 151
Query: 190 KDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDED 249
K KMA GSV+F F+RA VV +K + D + LL A+D GAED++EP + +D++ E+
Sbjct: 152 KKSHAKMAASGSVLFNFKRAGVVAVK-GNVDSESLLAAAMDTGAEDIVEPELEDDESPEE 210
Query: 250 R------AERYYKVVSTSDNYTDITTKLREAGIPFETDN-GSELLPITTIEVDDEAMELN 302
+ + K + +D++ + L++AG + DN G EL+P +EVDDEAME+N
Sbjct: 211 KKILCFFFFFFNKELGDNDDFGRVKAGLKDAGFSIDMDNSGLELVPTELVEVDDEAMEMN 270
Query: 303 KELIAKLLELDDVDAVYTDQ 322
+ LI KLLEL+DVDAVY+ Q
Sbjct: 271 RALIDKLLELEDVDAVYSTQ 290
>gi|384246344|gb|EIE19834.1| DUF28-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 245
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 108/247 (43%), Positives = 165/247 (66%), Gaps = 9/247 (3%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGRRS+KIAGRKGAQDAKKAK++ + K+++ A K GG +P N LA +++ K ++VP
Sbjct: 1 MGRRSAKIAGRKGAQDAKKAKVWGTLAKKIVQAAKAGGADPAGNAKLAEIIKACKAVEVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
KDI++RN+K+A+EK Q F E YE YG GG + E LTD + RS VR + GGK
Sbjct: 61 KDIIDRNLKKATEKNQSDFQEVTYEAYGAGGTGFIAECLTDNVNRSATDVRTAIVKAGGK 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
MAD GSV+F F+R VV + T + ++++++ A++AGA+DV+ P E+ T E Y
Sbjct: 121 MADSGSVLFNFQRCGVVLV--TGSSEEEVMNAAMEAGADDVV-PAEGEEGTVEG-----Y 172
Query: 256 KVVSTSDNYTDITTKLREAGIPFETD-NGSELLPITTIEVDDEAMELNKELIAKLLELDD 314
KV+++ + + + + E G+ + D +G P+T++EVDD A E+N+ ++ +LL +DD
Sbjct: 173 KVLTSQEEFASVRDFILELGLKVDHDSSGLMFAPLTSLEVDDAAFEINEAILDRLLAVDD 232
Query: 315 VDAVYTD 321
VDAV+T+
Sbjct: 233 VDAVHTN 239
>gi|226494558|ref|NP_001141671.1| hypothetical protein [Zea mays]
gi|194705494|gb|ACF86831.1| unknown [Zea mays]
gi|413946191|gb|AFW78840.1| hypothetical protein ZEAMMB73_559026 [Zea mays]
Length = 154
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 109/154 (70%), Positives = 133/154 (86%), Gaps = 1/154 (0%)
Query: 169 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 228
+VVEVLTDKITRSVA +R VVKDCG K+ADPGSV F+FR+ARVVNIK TDADKDQLL +A
Sbjct: 1 MVVEVLTDKITRSVADIRNVVKDCGAKLADPGSVTFRFRQARVVNIKVTDADKDQLLTVA 60
Query: 229 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 288
LDAGA+DV+EP ++ D E+ AER+YK+V+TS+NY + +KL+E G+ FETDNG EL+P
Sbjct: 61 LDAGADDVLEPNFDD-DDSEEEAERFYKIVTTSENYPVLLSKLQEEGLKFETDNGYELVP 119
Query: 289 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 322
+ IEVDDEA+ELNKEL++ LLELDDVDAVYTDQ
Sbjct: 120 LNPIEVDDEAVELNKELVSNLLELDDVDAVYTDQ 153
>gi|307106920|gb|EFN55164.1| hypothetical protein CHLNCDRAFT_52504 [Chlorella variabilis]
Length = 244
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 107/246 (43%), Positives = 157/246 (63%), Gaps = 9/246 (3%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGRRS+KIA RKG DA+K+KLY ++GK++ AV++GGP+ N L L AK VP
Sbjct: 1 MGRRSAKIATRKGKADAQKSKLYGKIGKQIAQAVRQGGPDALGNLRLRDALAAAKMAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
DI++RNIKRASE + + E YE YG GG V+E LTD I RS + V+ + GGK
Sbjct: 61 VDIIDRNIKRASESKAD-YTEMTYEAYGIGGTGFVIECLTDNINRSASDVKAAITKAGGK 119
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ADPGSV+F F+R +V + ++ + D + + A++AGA D+ + TDED A +
Sbjct: 120 VADPGSVLFNFQRQGLVMVDGSEGE-DAVFEAAMEAGAADI------QQHTDEDGAVVGF 172
Query: 256 KVVSTSDNYTDITTKLREAGIPFETD-NGSELLPITTIEVDDEAMELNKELIAKLLELDD 314
KV++ ++Y +++ L E G+ + + +G +P+ EVDDE E N+ L+ +LL +DD
Sbjct: 173 KVLTAVEDYGAVSSSLAEQGLKLQPEASGLVYVPLVQQEVDDEQFEGNEALLERLLAVDD 232
Query: 315 VDAVYT 320
VDAVYT
Sbjct: 233 VDAVYT 238
>gi|255070455|ref|XP_002507309.1| predicted protein [Micromonas sp. RCC299]
gi|226522584|gb|ACO68567.1| predicted protein [Micromonas sp. RCC299]
Length = 278
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 107/250 (42%), Positives = 164/250 (65%), Gaps = 11/250 (4%)
Query: 73 PVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGG-PNPTSNTVLAAVLEKAKE 131
P+ MGR+++KIA +K A+DAK+ K+Y + GK +++AVK+GG +P N LA V+ +AKE
Sbjct: 37 PLSMGRKAAKIAKKKNAEDAKRTKIYGKFGKLIVAAVKEGGGADPVMNQQLAKVMSQAKE 96
Query: 132 LDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKD 191
++VPK++++RNIKRAS+ Q F+E YE YG+GGV IV+EVLTD + R+ A R VV
Sbjct: 97 MNVPKELIDRNIKRASDGKQADFVELTYEAYGHGGVGIVIEVLTDNVNRAAAETRTVVNK 156
Query: 192 CGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRA 251
GGKMA+PGSV+F F R V+ + +++++L++A++AGAED+ + +
Sbjct: 157 GGGKMAEPGSVLFNFERKGVITLHCGGDEEEKVLEVAMEAGAEDIFAAQSSHEG------ 210
Query: 252 ERYYKVVSTSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLL 310
+ VV+ N+ L +AG D S +++P+ ++V+ N++LI KLL
Sbjct: 211 ---FVVVTAVSNFNACRRALVDAGFTIFPDETSLKMVPLVEVDVEAGTANTNQDLIDKLL 267
Query: 311 ELDDVDAVYT 320
ELDDVDAVYT
Sbjct: 268 ELDDVDAVYT 277
>gi|159483581|ref|XP_001699839.1| hypothetical protein CHLREDRAFT_155606 [Chlamydomonas reinhardtii]
gi|158281781|gb|EDP07535.1| predicted protein [Chlamydomonas reinhardtii]
Length = 296
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/249 (43%), Positives = 151/249 (60%), Gaps = 7/249 (2%)
Query: 74 VCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELD 133
V GRR++KIA RKG DAKK+K+Y R+GK++I K GG +P +N L +L +AK+L
Sbjct: 48 VVSGRRAAKIALRKGKSDAKKSKIYGRIGKKIIQLAKAGGADPATNAALDTLLRQAKDLG 107
Query: 134 VPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCG 193
VPKDIVERN+KRA++ Q + E YE YG GG +VV LTD + R+ + V+ V G
Sbjct: 108 VPKDIVERNLKRATDAKQGDYQEITYEAYGPGGTGLVVFCLTDNVNRTASEVKPTVTKAG 167
Query: 194 GKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAER 253
K+A+PGSV+F F+R ++ + T +D + + A++AGAEDV P ED
Sbjct: 168 AKVAEPGSVLFNFQRCGMIVVDGT--TEDAVFEAAMEAGAEDVEPVPPEEDGAPSTS--- 222
Query: 254 YYKVVSTSDNYTDITTKLREAGIPF-ETDNGSELLPITTIEVDDEAMELNKELIAKLLEL 312
YKV + ++ T +R G E D+ +EVDDEA N+ L+ KLLEL
Sbjct: 223 -YKVFVPVEAFSSTKTAMRGLGFSVNEEDSDLVFRAAAPVEVDDEAFARNEALVEKLLEL 281
Query: 313 DDVDAVYTD 321
DDVDAV+T+
Sbjct: 282 DDVDAVFTN 290
>gi|412986054|emb|CCO17254.1| conserved hypothetical protein [Bathycoccus prasinos]
Length = 298
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 99/248 (39%), Positives = 152/248 (61%), Gaps = 12/248 (4%)
Query: 74 VCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELD 133
V MGR+++K+A K DA + KLY + GKE+ A K+GG T N L +L+ AK +
Sbjct: 56 VYMGRKAAKVAQTKNKNDAIRTKLYGKFGKEIARAAKEGGTG-TDNVRLQGILKDAKRMS 114
Query: 134 VPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCG 193
VP D++ERN+K+A E F+E YE YG+GGV IV+EVL+D + R + VK G
Sbjct: 115 VPADLIERNLKKAGEAKGGDFMELTYECYGHGGVGIVMEVLSDNVNRCAGDIPAAVKKGG 174
Query: 194 GKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAER 253
GKMA+ GSV+F F R +V +K D+D + + A++AGA+DV E +++ +E
Sbjct: 175 GKMAESGSVLFNFERKGLVYLK--SGDEDAIFEAAIEAGADDVKE--------NDEFSED 224
Query: 254 YYKVVSTSDNYTDITTKLREAGIPFETDN-GSELLPITTIEVDDEAMELNKELIAKLLEL 312
Y V++ ++ + L + G + +N G +LLP+ +EV +E E N+ L+ K+LE+
Sbjct: 225 GYVVIAEYQSFASVRDSLIDGGFDVDAENSGLKLLPLANVEVSEEDAEANEVLLDKILEI 284
Query: 313 DDVDAVYT 320
+DVDAV+T
Sbjct: 285 EDVDAVFT 292
>gi|299117471|emb|CBN73974.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 306
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 107/245 (43%), Positives = 152/245 (62%), Gaps = 11/245 (4%)
Query: 74 VCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELD 133
V MGRR++KIA KG +DAK+ K ++R+GK++I AVK GGPN +N LA +++AK
Sbjct: 68 VMMGRRAAKIAKVKGREDAKRGKAFARIGKKIIMAVKAGGPNEDTNKQLADTIKEAKHNS 127
Query: 134 VPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCG 193
VPKD + R IKRA + Q F E +YE YG+GG +VV LTD + R++A V+ V K G
Sbjct: 128 VPKDNIARAIKRAVDGSQGDFKEVIYEAYGHGGTGMVVTALTDNVNRAIADVKAVWKKQG 187
Query: 194 GKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAER 253
K A GSV+F+F + V ++ + D++Q+++ A++AG +DV V E D E
Sbjct: 188 LKQAAQGSVLFQFEKRGRVEVQ-GEVDEEQVIEAAIEAGVDDV---EVVEGDH-----EG 238
Query: 254 YYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELD 313
+++T + +T L EAGI ET G L+P +VDDEAMELN + LLEL+
Sbjct: 239 TSWILTTPKDLMTLTGALSEAGITGET--GLALIPSGLADVDDEAMELNLAAVEALLELE 296
Query: 314 DVDAV 318
DVD V
Sbjct: 297 DVDTV 301
>gi|303286057|ref|XP_003062318.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455835|gb|EEH53137.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 276
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 108/306 (35%), Positives = 172/306 (56%), Gaps = 38/306 (12%)
Query: 17 ISNGVSSKWSPNSFALSKHGLLSRNLFSSASSISSWIPLYEVKHCNFQVRTIRTFAPVCM 76
+++ V+S S S+AL++ + ++S SS PL T +PVCM
Sbjct: 6 VASSVASLASRASYALARVASRRASRAVASSPPSSRRPL--------------TLSPVCM 51
Query: 77 GRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGG-PNPTSNTVLAAVLEKAKELDVP 135
GR+++K+A +K +AK+ KLY + GK +++AVK+GG +P SNT LA VL A L VP
Sbjct: 52 GRKAAKVAAKKQKGEAKRTKLYGKYGKLIVAAVKEGGGADPVSNTQLARVLADAARLSVP 111
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
+++V+RNIKRA++ Q ++E YE YG GGV IV+EVL+D + R+ A + + GGK
Sbjct: 112 RELVDRNIKRATDGSQADYMELTYEAYGEGGVGIVIEVLSDNVNRAAADTKATINKNGGK 171
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+A+PGS F ++ + ++A + G +DV+ ED +
Sbjct: 172 VAEPGSGAFYTL-------------EENVFEVACENGGDDVVPREDGEDG---------F 209
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDD 314
+ + + L +AG D + +++P+ ++EV DEA E+N+ L+ KLLEL+D
Sbjct: 210 TIYTEVQGFMQCQRALGDAGFEINPDETALKMIPLASVEVSDEAAEVNEALVEKLLELED 269
Query: 315 VDAVYT 320
VDAVYT
Sbjct: 270 VDAVYT 275
>gi|145346479|ref|XP_001417714.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577942|gb|ABO96007.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 254
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 141/244 (57%), Gaps = 13/244 (5%)
Query: 64 QVRTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGG-PNPTSNTVL 122
+ RT R C GR+++KIA +KG DA + KLY R GK + VK+GG +P +N L
Sbjct: 8 RARTYRASDVTC-GRKAAKIAQKKGKTDAARTKLYGRYGKLIAQTVKQGGSADPVANAAL 66
Query: 123 AAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSV 182
+L++A+ +VP+D++ERNIK+A+E + E YEVYG GGV IV EVLTD + R+
Sbjct: 67 GKLLKQAQAANVPRDLIERNIKKAAEGKSGDYFELTYEVYGAGGVGIVCEVLTDNVNRAA 126
Query: 183 AAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVN 242
+ R GGKMA+ GSVMF F R V + D++ + + A++AGAED++
Sbjct: 127 SETRTAATKAGGKMAESGSVMFNFNRRGVCVLD--GGDEEAVFEAAMEAGAEDIV----- 179
Query: 243 EDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELN 302
D AE + VV D+++ + L EAG D G + +PI IE DE ++N
Sbjct: 180 ---PRRDGAEG-WDVVCELDDFSAVQDALSEAGFTINEDTGLKCIPINEIETSDEDADVN 235
Query: 303 KELI 306
++I
Sbjct: 236 DKII 239
>gi|302837973|ref|XP_002950545.1| hypothetical protein VOLCADRAFT_120889 [Volvox carteri f.
nagariensis]
gi|300264094|gb|EFJ48291.1| hypothetical protein VOLCADRAFT_120889 [Volvox carteri f.
nagariensis]
Length = 637
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 138/236 (58%), Gaps = 7/236 (2%)
Query: 87 KGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRA 146
KG DAKKAK+Y R+GK++I K GG +P N L +L +AK+L VPKDIVERN+KRA
Sbjct: 402 KGKSDAKKAKIYGRVGKKIIQLAKAGGADPVMNAALDTLLRQAKDLGVPKDIVERNLKRA 461
Query: 147 SEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKF 206
++ Q + E YE YG GG +++ +TD + R+ + V+ V G K+A+PGSVMF F
Sbjct: 462 TDSKQGDYQEVTYEAYGPGGTGLIIFCVTDNLNRTASEVKPTVIKSGAKVAEPGSVMFNF 521
Query: 207 RRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTD 266
R ++ + T +D + + A++AGA+DV P ED + YKV + +
Sbjct: 522 SRCGMIVVDGT--TEDAVFEAAMEAGADDVEPVPPEED----GQPSTSYKVFVPVEAFAA 575
Query: 267 ITTKLREAGIPF-ETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
LR+ G E D+ +EVDDEA + L+ KLLELDDVD+V+T+
Sbjct: 576 AKATLRQLGFSVNEEDSDLVYKAAAPVEVDDEAFSRCEALMEKLLELDDVDSVFTN 631
>gi|338733770|ref|YP_004672243.1| hypothetical protein SNE_A18750 [Simkania negevensis Z]
gi|336483153|emb|CCB89752.1| UPF0082 protein pc1328 [Simkania negevensis Z]
Length = 237
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 95/239 (39%), Positives = 140/239 (58%), Gaps = 13/239 (5%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +KG DAKK K++SR+ KE+IS+VK+GGP+P SNT L L+KA+ +VP + +E
Sbjct: 8 ANIKHKKGRADAKKGKVFSRIAKEIISSVKQGGPDPKSNTKLRIALQKARIANVPAENIE 67
Query: 141 RNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
RNIK+AS Q F E YE+YG+GGV I+V+ +TD R+ + +R GG +A PG
Sbjct: 68 RNIKKASSNDQSDFSELTYELYGHGGVGIIVDAMTDNKNRTASDMRIATNKKGGTIASPG 127
Query: 201 SVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
SV + F R V+ I D++ L +AGAED D + Y V+++
Sbjct: 128 SVSYNFDRKGVIQIGKDQGDEETLFLQVTEAGAEDF------------DMDDELYLVITS 175
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ ++ KL E GI ++ E++P TT+E +E + N ELI L +LDDVD V+
Sbjct: 176 VEQLYEVKEKLEEQGITC-SEASLEMIPKTTVECSEEDQKANLELIEFLEDLDDVDVVF 233
>gi|282891212|ref|ZP_06299715.1| hypothetical protein pah_c048o043 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338174129|ref|YP_004650939.1| hypothetical protein PUV_01350 [Parachlamydia acanthamoebae UV-7]
gi|281498905|gb|EFB41221.1| hypothetical protein pah_c048o043 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336478487|emb|CCB85085.1| UPF0082 protein pc1328 [Parachlamydia acanthamoebae UV-7]
Length = 245
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/242 (38%), Positives = 142/242 (58%), Gaps = 15/242 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RKG DAKK K++SR+ KE+ISAVK GGP+ +N L VL+KA+E +VP DI
Sbjct: 6 KWANIKHRKGRADAKKGKVFSRIAKEIISAVKLGGPDAKANPRLRIVLQKAREANVPNDI 65
Query: 139 VERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMAD 198
++RNIK+AS Q +IE YE+YG+GGV I+++V+TD R + +R GG +A
Sbjct: 66 IDRNIKKASSADQADYIEMTYELYGHGGVGIIIDVMTDNKNRISSDMRIATNKRGGSIAT 125
Query: 199 PGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
PG+V F F R V+ I +++L + A++AGAED + A+ ++ +
Sbjct: 126 PGAVAFNFDRKGVIQISKKHGVEEELFNAAIEAGAEDF------------EVADEFFMIT 173
Query: 259 STSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ + + + G F+ D + E++P + +E D+E + N LI L L+DVDA
Sbjct: 174 TDPVDLFHVKDAVNHLG--FQADEATLEMIPKSYVECDEETAKANLALIDWLEALEDVDA 231
Query: 318 VY 319
VY
Sbjct: 232 VY 233
>gi|297620626|ref|YP_003708763.1| hypothetical protein wcw_0385 [Waddlia chondrophila WSU 86-1044]
gi|297375927|gb|ADI37757.1| conserved hypothetical protein [Waddlia chondrophila WSU 86-1044]
gi|337292376|emb|CCB90405.1| UPF0082 protein pc1328 [Waddlia chondrophila 2032/99]
Length = 243
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 92/246 (37%), Positives = 143/246 (58%), Gaps = 15/246 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +K DAKK K++SR+ KE+ISAVK GGP+P +N L VL+KAK +VP DI
Sbjct: 6 KWANIKHKKARVDAKKGKIFSRVAKEIISAVKVGGPDPKANPRLRLVLQKAKSQNVPNDI 65
Query: 139 VERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMAD 198
++RNIK+A++ Q F E YE+YG+GGV I+ +V+TD R + +R GG +A
Sbjct: 66 IDRNIKKATDADQADFDELTYELYGHGGVGIICDVMTDNKNRLASEMRIATNKKGGSIAT 125
Query: 199 PGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
PGSV F F R V+ + A +++L + +++AGAE+ ++ E + +
Sbjct: 126 PGSVSFNFDRKGVIQMALDHAVEEELFNASIEAGAEEF------------EKEEGMFVIT 173
Query: 259 STSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ ++ + + G F+ D S E++P ++E D E + N ELI L E+DDVD
Sbjct: 174 TDPTMLYEVKEAIEKLG--FKCDEASLEMIPKVSVECDVETAKSNLELIEWLEEIDDVDV 231
Query: 318 VYTDQI 323
VY + I
Sbjct: 232 VYHNMI 237
>gi|406982835|gb|EKE04104.1| hypothetical protein ACD_20C00106G0001 [uncultured bacterium]
Length = 234
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 139/239 (58%), Gaps = 17/239 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK D K KL+SR+ KE+ISAVK+ G +P SN L V++KAK+ ++P D+++
Sbjct: 8 ANIKHRKERSDKIKGKLFSRLAKEIISAVKQDGADPKSNAKLKIVIQKAKDANLPNDVID 67
Query: 141 RNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
RNIK+AS+K + + E YE+YGYGGV ++V+++TD R + +R CGG +A P
Sbjct: 68 RNIKKASQKDAQDYFEMTYELYGYGGVGMIVDIMTDNKNRIASDIRIATNKCGGTIAAPN 127
Query: 201 SVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
SV F F + V+ + +D+L A + GAED + E +YK+++
Sbjct: 128 SVAFNFMKKGVIKVDKKLISEDELFMKATEKGAEDFL------------VEEEFYKIITE 175
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+N + + G+ + ++ E++P T +E DE ++ N +LI L LDDVDAVY
Sbjct: 176 PENL-----HIVKDGLNVQCESTFEMMPKTLMEPGDENIDANIKLIEFLENLDDVDAVY 229
>gi|406987661|gb|EKE07938.1| hypothetical protein ACD_17C00442G0001 [uncultured bacterium]
Length = 238
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 91/241 (37%), Positives = 143/241 (59%), Gaps = 14/241 (5%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RK D KK K++SR+ KE+ISAVK+GG + +N L ++KAK+ ++P D
Sbjct: 6 KWANIKHRKERSDKKKGKIFSRIMKEIISAVKQGGSDLKANAKLKVAIQKAKDANIPNDN 65
Query: 139 VERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMAD 198
VERNIK+A+ + ++ YE+YG+GGV ++V+++TD R + +R CGG +A
Sbjct: 66 VERNIKKAASQDSTDYVSMTYELYGFGGVGLIVDIMTDNKNRISSDIRIATNKCGGTIAT 125
Query: 199 PGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
PGSV + F R V+ +K T +D+L +A +AGAED E+D ++++
Sbjct: 126 PGSVSYNFDRKGVIRVKRT-LPEDELFLLATEAGAEDF----SGEEDV--------FQII 172
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+T +++ I L +AG+ E + ++P +EVDDE + N LI L LDDVDAV
Sbjct: 173 TTIESFHYIKEILEKAGVIIEEAELA-MVPKIWVEVDDETADSNITLIEWLESLDDVDAV 231
Query: 319 Y 319
Y
Sbjct: 232 Y 232
>gi|255348830|ref|ZP_05380837.1| hypothetical protein Ctra70_02435 [Chlamydia trachomatis 70]
gi|255503370|ref|ZP_05381760.1| hypothetical protein Ctra7_02445 [Chlamydia trachomatis 70s]
gi|385241835|ref|YP_005809675.1| hypothetical protein E11023_02400 [Chlamydia trachomatis E/11023]
gi|385245442|ref|YP_005814265.1| hypothetical protein E150_02415 [Chlamydia trachomatis E/150]
gi|386262814|ref|YP_005816093.1| hypothetical protein SW2_4661 [Chlamydia trachomatis Sweden2]
gi|389859029|ref|YP_006361270.1| hypothetical protein ESW3_4661 [Chlamydia trachomatis E/SW3]
gi|289525502|emb|CBJ14979.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2]
gi|296435058|gb|ADH17236.1| hypothetical protein E150_02415 [Chlamydia trachomatis E/150]
gi|296438778|gb|ADH20931.1| hypothetical protein E11023_02400 [Chlamydia trachomatis E/11023]
gi|380250978|emb|CCE12739.1| conserved hypothetical protein [Chlamydia trachomatis E/SW3]
gi|440529838|emb|CCP55322.1| hypothetical protein SOTONE4_00482 [Chlamydia trachomatis
E/SotonE4]
gi|440530737|emb|CCP56221.1| hypothetical protein SOTONE8_00488 [Chlamydia trachomatis
E/SotonE8]
gi|440535205|emb|CCP60715.1| hypothetical protein BOUR_00487 [Chlamydia trachomatis E/Bour]
Length = 238
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 132/234 (56%), Gaps = 12/234 (5%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
RK D KK K++SR KE+ISAVK GGP+P SN L +++KAK+ ++P + +ERN+K+
Sbjct: 13 RKERADHKKGKIFSRTIKELISAVKMGGPDPKSNARLRMIIQKAKDQNIPNENIERNLKK 72
Query: 146 ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 205
AS Q+ + E YE+YG+GGV I+VE +TD R+ + +R V GG + +PGSV++
Sbjct: 73 ASSADQKNYEEITYELYGFGGVGIIVEAMTDNKNRTASDMRVAVNKRGGALVEPGSVLYN 132
Query: 206 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 265
F R + D+ LL +D G ED+ D+D+ E ++ V+ +
Sbjct: 133 FSRKGACCVPKHSIDEASLLTHVIDCGGEDL--------DSDD---EEFFLVLCEPTDLA 181
Query: 266 DITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ L G+ ++ +P+ ++ D+E + N LIA L +DDVD VY
Sbjct: 182 SVKEALLAKGVTC-SEERLIYVPLRLVDCDEETGKSNLALIAWLENIDDVDDVY 234
>gi|15835357|ref|NP_297116.1| hypothetical protein TC0742 [Chlamydia muridarum Nigg]
gi|270285529|ref|ZP_06194923.1| hypothetical protein CmurN_03748 [Chlamydia muridarum Nigg]
gi|270289540|ref|ZP_06195842.1| hypothetical protein CmurW_03848 [Chlamydia muridarum Weiss]
gi|301336926|ref|ZP_07225128.1| hypothetical protein CmurM_03805 [Chlamydia muridarum MopnTet14]
gi|14195461|sp|Q9PJT5.1|Y742_CHLMU RecName: Full=Probable transcriptional regulatory protein TC_0742
gi|7190771|gb|AAF39551.1| conserved hypothetical protein [Chlamydia muridarum Nigg]
Length = 238
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 132/234 (56%), Gaps = 12/234 (5%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
RK D KK K++SR KE+ISAVK GGP+P SN L +++KAK+ ++P + +ERN+K+
Sbjct: 13 RKERADHKKGKIFSRTIKELISAVKMGGPDPKSNARLRMIIQKAKDQNIPNENIERNLKK 72
Query: 146 ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 205
AS Q+ + E YE+YG+GGV I+VE +TD R+ + +R V GG + +PGSV++
Sbjct: 73 ASSADQKNYEEVTYELYGFGGVGIIVEAMTDNKNRTASDMRVAVNKRGGALVEPGSVLYN 132
Query: 206 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 265
F R + + D+ LL +D G ED+ D DE+ ++ V+ +
Sbjct: 133 FSRKGACYVPKSSIDEASLLTHVIDCGGEDL-------DSEDEE----FFLVLCEPTDLA 181
Query: 266 DITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ L G+ ++ +P+ ++ D+EA + N LI L +DDVD VY
Sbjct: 182 SVKEALLAKGVTC-SEEKMIYVPLRLVDCDEEAGKSNLALIEWLENIDDVDDVY 234
>gi|384449165|ref|YP_005661767.1| hypothetical protein CPK_ORF01090 [Chlamydophila pneumoniae LPCoLN]
gi|269303451|gb|ACZ33551.1| conserved hypothetical protein TIGR01033 [Chlamydophila pneumoniae
LPCoLN]
Length = 238
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/236 (36%), Positives = 134/236 (56%), Gaps = 12/236 (5%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
RK D KK K++SR+ KE+ISAVK GG +P SN L V++KAKE ++P + +ERN+K+
Sbjct: 13 RKERADHKKGKIFSRIIKELISAVKLGGADPKSNARLRMVIQKAKENNIPNENIERNLKK 72
Query: 146 ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 205
A+ Q+ F E YE+YG+GGV I+VE +TD R+ + +R + GG + +PGSV++
Sbjct: 73 ATSAEQKNFEEVTYELYGHGGVGIIVEAMTDNKNRTASDMRIAINKRGGSLVEPGSVLYN 132
Query: 206 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 265
F R + + D++ L A++AGAED+ DT++ E + V+
Sbjct: 133 FARKGACTVAKSSIDEEVLFSYAIEAGAEDL--------DTED---EENFLVICAPSELA 181
Query: 266 DITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ KL G D LP+ ++ D++ E N LI L +++DVD VY +
Sbjct: 182 SVKEKLISQGATCSEDRLI-YLPLRLVDCDEKDGEANLALIDWLEQIEDVDDVYHN 236
>gi|218961235|ref|YP_001741010.1| hypothetical protein CLOAM0931 [Candidatus Cloacamonas
acidaminovorans]
gi|167729892|emb|CAO80804.1| conserved hypothetical protein [Candidatus Cloacamonas
acidaminovorans str. Evry]
Length = 250
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/246 (38%), Positives = 138/246 (56%), Gaps = 18/246 (7%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ S I +KGA DAK+ K+++R+ KE+I A K GG +P N L + AKE ++PK+
Sbjct: 6 KWSSIKHKKGAADAKRGKVFTRLVKEIILAAKTGGGDPDMNPRLRTAINTAKENNMPKEN 65
Query: 139 VERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ER IKR + E A+ E +YE YG+ GV IVVEV+TD RSV+ +R GG +A
Sbjct: 66 IERAIKRGTGEIEGAAYEEVIYEGYGHNGVGIVVEVMTDNKKRSVSELRHTFSKYGGNLA 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
+ GSV + F + N+ D+D+ + AL+AGA+DV +NED+ D V
Sbjct: 126 ETGSVAWNFEQKGFFNVPSAGLDEDEFMLKALEAGADDV---ELNEDNFD---------V 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDV 315
++ ++ + L + G P + +EL +P TI VDD+ E LI L ELDDV
Sbjct: 174 YTSPTDFHIVIGNLEKEGYPI---HNAELTRVPKNTIAVDDDTAEKLMRLIESLEELDDV 230
Query: 316 DAVYTD 321
VY +
Sbjct: 231 QKVYAN 236
>gi|291280038|ref|YP_003496873.1| hypothetical protein DEFDS_1661 [Deferribacter desulfuricans SSM1]
gi|290754740|dbj|BAI81117.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
Length = 249
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 93/246 (37%), Positives = 142/246 (57%), Gaps = 18/246 (7%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RK AQDAKK K+++++ +E++ A K GG +P N L LEKA++ ++PK+
Sbjct: 6 KWANIKHRKAAQDAKKGKIFTKIARELMVAAKIGGSDPEMNPRLRVALEKARQANMPKEN 65
Query: 139 VERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
VER IK+ + +G E+ E V YE YG GGV+I+V+ LTD R+VA VR + GG +
Sbjct: 66 VERAIKKGTGEGNESNFEDVIYEGYGPGGVAILVQALTDNKNRTVAEVRSTLTKRGGSLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
+ G V + F + V+ IK D+D L+DI L+AGAED+ V +D+ Y+V
Sbjct: 126 EAGCVAWLFEKKGVIGIKRETIDEDTLMDIVLEAGAEDL---KVEDDN---------YEV 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDV 315
++ Y ++ L + GI E +EL P T++V+ E + LI L +LDDV
Sbjct: 174 ITEPSEYYNVKKALEDKGIKIEY---AELTMKPKNTVKVEGENAKKLLGLIEALEDLDDV 230
Query: 316 DAVYTD 321
VY +
Sbjct: 231 QEVYAN 236
>gi|15618484|ref|NP_224769.1| hypothetical protein CPn0573 [Chlamydophila pneumoniae CWL029]
gi|15836104|ref|NP_300628.1| hypothetical protein CPj0573 [Chlamydophila pneumoniae J138]
gi|16752465|ref|NP_444727.1| hypothetical protein CP0176 [Chlamydophila pneumoniae AR39]
gi|33241926|ref|NP_876867.1| hypothetical protein CpB0595 [Chlamydophila pneumoniae TW-183]
gi|6226436|sp|Q9Z7Y0.1|Y573_CHLPN RecName: Full=Probable transcriptional regulatory protein
CPn_0573/CP_0176/CPj0573/CpB0595
gi|4376867|gb|AAD18713.1| YebC family hypothetical protein [Chlamydophila pneumoniae CWL029]
gi|7189106|gb|AAF38050.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39]
gi|8978944|dbj|BAA98779.1| YebC family hypothetical protein [Chlamydophila pneumoniae J138]
gi|33236436|gb|AAP98524.1| hypothetical protein CpB0595 [Chlamydophila pneumoniae TW-183]
Length = 238
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 85/236 (36%), Positives = 134/236 (56%), Gaps = 12/236 (5%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
RK D KK K++SR+ KE+ISAVK GG +P SN L V++KAKE ++P + +ERN+K+
Sbjct: 13 RKERADHKKGKIFSRIIKELISAVKLGGADPKSNARLRMVIQKAKENNIPNENIERNLKK 72
Query: 146 ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 205
A+ Q+ F E YE+YG+GGV I+VE +TD R+ + +R + GG + +PGSV++
Sbjct: 73 ATSAEQKNFEEVTYELYGHGGVGIIVEAMTDNKNRTASDMRIAINKRGGSLVEPGSVLYN 132
Query: 206 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 265
F R + + D++ + A++AGAED+ DT++ E + V+
Sbjct: 133 FARKGACTVAKSSIDEEVIFSYAIEAGAEDL--------DTED---EENFLVICAPSELA 181
Query: 266 DITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ KL G D LP+ ++ D++ E N LI L +++DVD VY +
Sbjct: 182 SVKEKLISQGATCSEDRLI-YLPLRLVDCDEKDGEANLALIDWLEQIEDVDDVYHN 236
>gi|76789193|ref|YP_328279.1| hypothetical protein CTA_0499 [Chlamydia trachomatis A/HAR-13]
gi|166154671|ref|YP_001654789.1| hypothetical protein CTL0717 [Chlamydia trachomatis 434/Bu]
gi|166155546|ref|YP_001653801.1| hypothetical protein CTLon_0713 [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|237802885|ref|YP_002888079.1| hypothetical protein JALI_4591 [Chlamydia trachomatis B/Jali20/OT]
gi|237804807|ref|YP_002888961.1| hypothetical protein CTB_4591 [Chlamydia trachomatis B/TZ1A828/OT]
gi|301335941|ref|ZP_07224185.1| hypothetical protein CtraL_03910 [Chlamydia trachomatis L2tet1]
gi|339626135|ref|YP_004717614.1| hypothetical protein CTL2C_491 [Chlamydia trachomatis L2c]
gi|376282466|ref|YP_005156292.1| hypothetical protein CTR_4591 [Chlamydia trachomatis A2497]
gi|385270156|ref|YP_005813316.1| putative cytosolic protein [Chlamydia trachomatis A2497]
gi|119372144|sp|Q3KLP1.1|Y499_CHLTA RecName: Full=Probable transcriptional regulatory protein CTA_0499
gi|226708035|sp|B0BC95.1|Y713_CHLTB RecName: Full=Probable transcriptional regulatory protein
CTLon_0713
gi|226708038|sp|B0B830.1|Y717_CHLT2 RecName: Full=Probable transcriptional regulatory protein CTL0717
gi|76167723|gb|AAX50731.1| hypthetical protein YebC family [Chlamydia trachomatis A/HAR-13]
gi|165930659|emb|CAP04156.1| conserved hypothetical protein [Chlamydia trachomatis 434/Bu]
gi|165931534|emb|CAP07110.1| conserved hypothetical protein [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|231273107|emb|CAX10020.1| conserved hypothetical protein [Chlamydia trachomatis B/TZ1A828/OT]
gi|231274119|emb|CAX10913.1| conserved hypothetical protein [Chlamydia trachomatis B/Jali20/OT]
gi|339460907|gb|AEJ77410.1| conserved hypothetical protein [Chlamydia trachomatis L2c]
gi|347975296|gb|AEP35317.1| putative cytosolic protein [Chlamydia trachomatis A2497]
gi|371908496|emb|CAX09126.1| conserved hypothetical protein [Chlamydia trachomatis A2497]
gi|438690390|emb|CCP49647.1| hypothetical protein A7249_00489 [Chlamydia trachomatis A/7249]
gi|438691475|emb|CCP48749.1| hypothetical protein A5291_00490 [Chlamydia trachomatis A/5291]
gi|438692848|emb|CCP47850.1| hypothetical protein A363_00491 [Chlamydia trachomatis A/363]
gi|440526266|emb|CCP51750.1| hypothetical protein L2B8200_00476 [Chlamydia trachomatis
L2b/8200/07]
gi|440536091|emb|CCP61604.1| hypothetical protein L2B795_00477 [Chlamydia trachomatis L2b/795]
gi|440536984|emb|CCP62498.1| hypothetical protein L1440_00480 [Chlamydia trachomatis L1/440/LN]
gi|440537873|emb|CCP63387.1| hypothetical protein L11322_00477 [Chlamydia trachomatis
L1/1322/p2]
gi|440538763|emb|CCP64277.1| hypothetical protein L1115_00477 [Chlamydia trachomatis L1/115]
gi|440539652|emb|CCP65166.1| hypothetical protein L1224_00477 [Chlamydia trachomatis L1/224]
gi|440540544|emb|CCP66058.1| hypothetical protein L225667R_00479 [Chlamydia trachomatis
L2/25667R]
gi|440541432|emb|CCP66946.1| hypothetical protein L3404_00477 [Chlamydia trachomatis L3/404/LN]
gi|440542319|emb|CCP67833.1| hypothetical protein L2BUCH2_00476 [Chlamydia trachomatis
L2b/UCH-2]
gi|440543210|emb|CCP68724.1| hypothetical protein L2BCAN2_00477 [Chlamydia trachomatis
L2b/Canada2]
gi|440544101|emb|CCP69615.1| hypothetical protein L2BLST_00476 [Chlamydia trachomatis L2b/LST]
gi|440544991|emb|CCP70505.1| hypothetical protein L2BAMS1_00476 [Chlamydia trachomatis L2b/Ams1]
gi|440545881|emb|CCP71395.1| hypothetical protein L2BCV204_00476 [Chlamydia trachomatis
L2b/CV204]
gi|440914143|emb|CCP90560.1| hypothetical protein L2BAMS2_00476 [Chlamydia trachomatis L2b/Ams2]
gi|440915033|emb|CCP91450.1| hypothetical protein L2BAMS3_00476 [Chlamydia trachomatis L2b/Ams3]
gi|440915924|emb|CCP92341.1| hypothetical protein L2BCAN1_00477 [Chlamydia trachomatis
L2b/Canada1]
gi|440916819|emb|CCP93236.1| hypothetical protein L2BAMS4_00477 [Chlamydia trachomatis L2b/Ams4]
gi|440917709|emb|CCP94126.1| hypothetical protein L2BAMS5_00477 [Chlamydia trachomatis L2b/Ams5]
Length = 238
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 131/234 (55%), Gaps = 12/234 (5%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
RK D KK K++SR KE+ISAVK GGP+P SN L +++KAK+ ++P + +ERN+K+
Sbjct: 13 RKERADHKKGKIFSRTIKELISAVKMGGPDPKSNARLRMIIQKAKDQNIPNENIERNLKK 72
Query: 146 ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 205
AS Q+ + E YE+YG+GGV I+VE +TD R+ + +R V GG + +PGSV++
Sbjct: 73 ASSADQKNYEEVTYELYGFGGVGIIVEAMTDNKNRTASDMRVAVNKRGGALVEPGSVLYN 132
Query: 206 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 265
F R + D+ LL +D G ED+ D+D+ E ++ V+ +
Sbjct: 133 FSRKGACYVPKHSIDEASLLTHVIDCGGEDL--------DSDD---EEFFLVLCEPTDLA 181
Query: 266 DITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ L G+ ++ +P+ ++ D+E + N LI L +DDVD VY
Sbjct: 182 SVKEALLAKGVTC-SEERLIYVPLRLVDCDEETGKSNLALIEWLENIDDVDDVY 234
>gi|89898645|ref|YP_515755.1| hypothetical protein CF0838 [Chlamydophila felis Fe/C-56]
gi|119392007|sp|Q253C8.1|Y838_CHLFF RecName: Full=Probable transcriptional regulatory protein CF0838
gi|89332017|dbj|BAE81610.1| conserved hypothetical protein [Chlamydophila felis Fe/C-56]
Length = 238
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 134/234 (57%), Gaps = 12/234 (5%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
RK D K+ K++SR KE+ISAVK GGP+P +N L +++KAK+ ++P + +ERN+K+
Sbjct: 13 RKERADHKRGKIFSRTIKELISAVKMGGPDPKTNARLRVIIQKAKDQNIPSENIERNLKK 72
Query: 146 ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 205
AS Q+ F + YE+YGYGGV I+VE +TD R+ + +R V GG + +PGSV++
Sbjct: 73 ASSADQKNFEDVTYELYGYGGVGIIVEAMTDNKNRTASDMRIAVNKRGGSLVEPGSVLYN 132
Query: 206 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 265
F R + D+ LL ++ GAED+ D D+ E ++ V+ + +
Sbjct: 133 FSRKGACYVPKNSIDEAALLSHVIEVGAEDL--------DNDD---EEHFVVLCDPVDLS 181
Query: 266 DITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ +L G+ T+ +P+ ++ D++ E N LI L ++DDVD VY
Sbjct: 182 SVKEQLVALGVTC-TEEKLIYVPLRVVDCDEKDGEANLALIEWLEKIDDVDEVY 234
>gi|339450847|ref|ZP_08654217.1| hypothetical protein LlacK3_06612 [Leuconostoc lactis KCTC 3528]
Length = 240
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 134/241 (55%), Gaps = 16/241 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ + A K GG +P N L V+EKAK ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKLAHDFYVAAKAGGADPNMNASLRLVVEKAKAANMPKDNIQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ +AS G + F E YE YG GV+I+VE TD I R+V+++R K GG + GSV
Sbjct: 70 LDKASGAGGQKFEEVTYEGYGTAGVAILVEASTDNINRTVSSIRNSFKHFGGALGTSGSV 129
Query: 203 MFKFRRARVVNIK---FTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
F+F R + I F D D+D +L+ AL+AGAEDV + +++ +
Sbjct: 130 AFQFDRKGYLAINRADFPDLDEDTVLEAALEAGAEDV------------QTQDEVFEIYT 177
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
T+ ++ + + + AG FE + ++ E+ DE E +L+ +L E +DV AVY
Sbjct: 178 TAADFQAVESAMTAAGYVFEEAEVT-MIAQNPAEISDEDREKLDKLVDELEENEDVLAVY 236
Query: 320 T 320
T
Sbjct: 237 T 237
>gi|255507048|ref|ZP_05382687.1| hypothetical protein CtraD_02420 [Chlamydia trachomatis D(s)2923]
gi|389858153|ref|YP_006360395.1| hypothetical protein FSW4_4661 [Chlamydia trachomatis F/SW4]
gi|389859905|ref|YP_006362145.1| hypothetical protein FSW5_4661 [Chlamydia trachomatis F/SW5]
gi|380249225|emb|CCE14517.1| conserved hypothetical protein [Chlamydia trachomatis F/SW5]
gi|380250100|emb|CCE13628.1| conserved hypothetical protein [Chlamydia trachomatis F/SW4]
gi|440527164|emb|CCP52648.1| hypothetical protein SOTOND1_00484 [Chlamydia trachomatis
D/SotonD1]
gi|440531628|emb|CCP57138.1| hypothetical protein SOTONF3_00482 [Chlamydia trachomatis
F/SotonF3]
Length = 238
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 132/236 (55%), Gaps = 12/236 (5%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
RK D KK K++SR KE+ISAVK GGP+P SN L +++KAK+ ++P + +ERN+K+
Sbjct: 13 RKERADHKKGKIFSRTIKELISAVKMGGPDPKSNARLRMIIQKAKDQNIPNENIERNLKK 72
Query: 146 ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 205
AS Q+ + E YE+YG+GGV I+VE +TD R+ + +R V GG + +PGSV++
Sbjct: 73 ASSADQKNYEEITYELYGFGGVGIIVEAMTDNKNRTASDMRVAVNKRGGALVEPGSVLYN 132
Query: 206 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 265
F R + D+ LL +D G ED+ D+D+ E ++ V+ +
Sbjct: 133 FSRKGACCVPKHSIDEASLLTHVIDCGGEDL--------DSDD---EEFFLVLCEPTDLA 181
Query: 266 DITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ L G+ ++ +P+ ++ D+E + N LI L ++DVD VY +
Sbjct: 182 SVKEALLAKGVTC-SEERLIYVPLRLVDCDEETGKSNLALIEWLENINDVDDVYHN 236
>gi|15605184|ref|NP_219970.1| hypothetical protein CT457 [Chlamydia trachomatis D/UW-3/CX]
gi|255311269|ref|ZP_05353839.1| hypothetical protein Ctra62_02385 [Chlamydia trachomatis 6276]
gi|255317571|ref|ZP_05358817.1| hypothetical protein Ctra6_02380 [Chlamydia trachomatis 6276s]
gi|385239980|ref|YP_005807822.1| hypothetical protein G9768_02385 [Chlamydia trachomatis G/9768]
gi|385240904|ref|YP_005808745.1| hypothetical protein G11222_02390 [Chlamydia trachomatis G/11222]
gi|385242758|ref|YP_005810597.1| hypothetical protein CTG9301_02395 [Chlamydia trachomatis G/9301]
gi|385243665|ref|YP_005811511.1| cytosolic protein [Chlamydia trachomatis D-EC]
gi|385244545|ref|YP_005812389.1| cytosolic protein [Chlamydia trachomatis D-LC]
gi|385246367|ref|YP_005815189.1| hypothetical protein G11074_02390 [Chlamydia trachomatis G/11074]
gi|6226437|sp|O84463.1|Y457_CHLTR RecName: Full=Probable transcriptional regulatory protein CT_457
gi|3328890|gb|AAC68057.1| YebC family [Chlamydia trachomatis D/UW-3/CX]
gi|296435985|gb|ADH18159.1| hypothetical protein G9768_02385 [Chlamydia trachomatis G/9768]
gi|296436912|gb|ADH19082.1| hypothetical protein G11222_02390 [Chlamydia trachomatis G/11222]
gi|296437846|gb|ADH20007.1| hypothetical protein G11074_02390 [Chlamydia trachomatis G/11074]
gi|297140346|gb|ADH97104.1| hypothetical protein CTG9301_02395 [Chlamydia trachomatis G/9301]
gi|297748588|gb|ADI51134.1| Hypothetical cytosolic protein [Chlamydia trachomatis D-EC]
gi|297749468|gb|ADI52146.1| Hypothetical cytosolic protein [Chlamydia trachomatis D-LC]
gi|440525379|emb|CCP50630.1| hypothetical protein SOTONK1_00481 [Chlamydia trachomatis
K/SotonK1]
gi|440528056|emb|CCP53540.1| hypothetical protein SOTOND5_00482 [Chlamydia trachomatis
D/SotonD5]
gi|440528946|emb|CCP54430.1| hypothetical protein SOTOND6_00481 [Chlamydia trachomatis
D/SotonD6]
gi|440532521|emb|CCP58031.1| hypothetical protein SOTONG1_00483 [Chlamydia trachomatis
G/SotonG1]
gi|440533414|emb|CCP58924.1| hypothetical protein SOTONIA1_00484 [Chlamydia trachomatis
Ia/SotonIa1]
gi|440534308|emb|CCP59818.1| hypothetical protein SOTONIA3_00484 [Chlamydia trachomatis
Ia/SotonIa3]
Length = 238
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 132/236 (55%), Gaps = 12/236 (5%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
RK D KK K++SR KE+ISAVK GGP+P SN L +++KAK+ ++P + +ERN+K+
Sbjct: 13 RKERADHKKGKIFSRTIKELISAVKMGGPDPKSNARLRMIIQKAKDQNIPNENIERNLKK 72
Query: 146 ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 205
AS Q+ + E YE+YG+GGV I+VE +TD R+ + +R V GG + +PGSV++
Sbjct: 73 ASSADQKNYEEVTYELYGFGGVGIIVEAMTDNKNRTASDMRVAVNKRGGALVEPGSVLYN 132
Query: 206 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 265
F R + D+ LL +D G ED+ D+D+ E ++ V+ +
Sbjct: 133 FSRKGACYVPKHSIDEASLLTHMIDCGGEDL--------DSDD---EEFFLVLCEPTDLA 181
Query: 266 DITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ L G+ ++ +P+ ++ D+E + N LI L ++DVD VY +
Sbjct: 182 SVKEALLAKGVTC-SEERLIYVPLRLVDCDEETGKSNLALIEWLENINDVDDVYHN 236
>gi|330444187|ref|YP_004377173.1| hypothetical protein G5S_0485 [Chlamydophila pecorum E58]
gi|328807297|gb|AEB41470.1| conserved hypothetical protein TIGR01033 [Chlamydophila pecorum
E58]
Length = 238
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 133/236 (56%), Gaps = 12/236 (5%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
RK D KK K++SR+ KE+ISAVK GG + +N L +++KAK+ ++P + +ERN+K+
Sbjct: 13 RKERADHKKGKIFSRIIKELISAVKLGGADAKTNARLRMIIQKAKDHNIPNENIERNLKK 72
Query: 146 ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 205
AS Q + E YE+YGYGGV I+VE +TD R+ + +R V GG + +PGSV++
Sbjct: 73 ASSAEQNTYEEVTYELYGYGGVGIIVEAMTDNKNRTASDMRIAVNKRGGSLVEPGSVLYN 132
Query: 206 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 265
F R + +++LL A+DAGAED+ D+ DE+ ++ V+ S
Sbjct: 133 FARKGACYVPKASIKEEELLAKAIDAGAEDL-------DNEDEE----HFLVICDSTELA 181
Query: 266 DITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ L G+ D LP+ ++ ++E + N LI L ++ DVD VY +
Sbjct: 182 AVKENLLSQGVHCVEDKLI-YLPLRLVDCNEEYGKANLALIEWLEQVSDVDEVYHN 236
>gi|407718546|ref|YP_006795951.1| hypothetical protein C270_05205 [Leuconostoc carnosum JB16]
gi|407242302|gb|AFT81952.1| hypothetical protein C270_05205 [Leuconostoc carnosum JB16]
Length = 241
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 134/241 (55%), Gaps = 16/241 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ ++ A K GG +P N L V++KAK ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKLAHDLYVAAKAGGADPDLNASLRLVVDKAKAANMPKDNIQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ +AS G + F E YE YG GV+++VE TD I R+V+++R K GG + GSV
Sbjct: 70 LDKASGAGGQKFEEVTYEGYGTAGVAVLVETSTDNINRTVSSIRNSFKHYGGALGTSGSV 129
Query: 203 MFKFRRARVVNI---KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
F+F R + I F D D+D +L+ AL+AGAEDV + +++ +
Sbjct: 130 AFQFDRKGYLAIDREAFPDLDEDTVLEAALEAGAEDV------------QTQDEVFEIYT 177
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
S ++ + L EAG FE D ++ + + DE E +L+ +L E +DV AVY
Sbjct: 178 ESGDFQTVEASLTEAGYIFE-DAEVTMIAQNPMVISDEDREKLDKLVDELEENEDVLAVY 236
Query: 320 T 320
T
Sbjct: 237 T 237
>gi|384135947|ref|YP_005518661.1| hypothetical protein TC41_2236 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
gi|339290032|gb|AEJ44142.1| protein of unknown function DUF28 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
Length = 249
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/240 (34%), Positives = 139/240 (57%), Gaps = 14/240 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA + +L++++ K++ A ++GG NP +N L +E+A+ ++P + ++R
Sbjct: 12 IQRRKGKQDAIRGQLFTKLSKDIYQAAREGGGNPETNFRLRVAIERARANNLPMENIQRT 71
Query: 143 IKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
I +A+ + + A + E +YE YG GV++++E+LTD R+ A VR + + GG +A+ G+
Sbjct: 72 IAKATGQIEGATYEELLYEGYGPHGVALLLEILTDNRNRTAAEVRHLFRKHGGNLAESGA 131
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
V + F+R + + D D L+ +AL+AGAEDVIE R Y V +T
Sbjct: 132 VAWMFQRFGEIVVPKYKVDGDDLMMVALEAGAEDVIE------------RSRTYVVKTTP 179
Query: 262 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
DN+ + L E GIP+E + T +++ +EA+E +L+ L LDDV VYT+
Sbjct: 180 DNFRAVRMSLEEKGIPYE-EASLTYEASTKMDLPEEALEQVYDLVEALESLDDVQTVYTN 238
>gi|296110560|ref|YP_003620941.1| hypothetical protein LKI_02145 [Leuconostoc kimchii IMSNU 11154]
gi|339490347|ref|YP_004704852.1| hypothetical protein LGMK_00835 [Leuconostoc sp. C2]
gi|295832091|gb|ADG39972.1| hypothetical protein LKI_02145 [Leuconostoc kimchii IMSNU 11154]
gi|338852019|gb|AEJ30229.1| hypothetical protein LGMK_00835 [Leuconostoc sp. C2]
Length = 240
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 134/241 (55%), Gaps = 16/241 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ ++ A K GG P N L V+EKAK ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKLAHDLYVAAKAGGAEPDLNASLRLVIEKAKSANMPKDNIQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ +AS G + F E YE YG GV+I+VE TD I R+V+++R K GG + GSV
Sbjct: 70 LDKASGAGGKKFEEVTYEGYGTAGVAILVETSTDNINRTVSSIRNSFKHFGGALGTSGSV 129
Query: 203 MFKFRRARVVNIK---FTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
F+F R + I F D D+D +L+ AL+AGA+DV +DD +++ +
Sbjct: 130 AFQFDRKGYLAIDREAFPDLDEDTILEAALEAGADDV----QTQDDV--------FEIFT 177
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
++ + L EAG F D+ ++ + + D+ E +L+ +L E +DV AVY
Sbjct: 178 QPSDFQQVEGALTEAGYAF-ADSEVTMISQNPMTISDDDREKLDKLVDELEENEDVLAVY 236
Query: 320 T 320
T
Sbjct: 237 T 237
>gi|199597322|ref|ZP_03210753.1| hypothetical protein LRH_05549 [Lactobacillus rhamnosus HN001]
gi|258507981|ref|YP_003170732.1| hypothetical protein LGG_00986 [Lactobacillus rhamnosus GG]
gi|258539235|ref|YP_003173734.1| hypothetical protein LC705_01044 [Lactobacillus rhamnosus Lc 705]
gi|385827663|ref|YP_005865435.1| hypothetical protein [Lactobacillus rhamnosus GG]
gi|385834892|ref|YP_005872666.1| hypothetical protein LRHK_1024 [Lactobacillus rhamnosus ATCC 8530]
gi|418070273|ref|ZP_12707548.1| hypothetical protein R0011_00685 [Lactobacillus rhamnosus R0011]
gi|421769430|ref|ZP_16206137.1| hypothetical protein LRHMDP2_1475 [Lactobacillus rhamnosus LRHMDP2]
gi|421772287|ref|ZP_16208943.1| hypothetical protein LRHMDP3_1373 [Lactobacillus rhamnosus LRHMDP3]
gi|199591838|gb|EDY99913.1| hypothetical protein LRH_05549 [Lactobacillus rhamnosus HN001]
gi|257147908|emb|CAR86881.1| Integrase [Lactobacillus rhamnosus GG]
gi|257150911|emb|CAR89883.1| Integrase [Lactobacillus rhamnosus Lc 705]
gi|259649308|dbj|BAI41470.1| conserved hypothetical protein [Lactobacillus rhamnosus GG]
gi|355394383|gb|AER63813.1| conserved hypothetical protein [Lactobacillus rhamnosus ATCC 8530]
gi|357539693|gb|EHJ23710.1| hypothetical protein R0011_00685 [Lactobacillus rhamnosus R0011]
gi|411183855|gb|EKS50990.1| hypothetical protein LRHMDP3_1373 [Lactobacillus rhamnosus LRHMDP3]
gi|411184561|gb|EKS51693.1| hypothetical protein LRHMDP2_1475 [Lactobacillus rhamnosus LRHMDP2]
Length = 243
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 85/240 (35%), Positives = 136/240 (56%), Gaps = 15/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K+GGP+P+ N L V++KAK ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKLSRELYMAAKQGGPDPSGNPSLRLVMDKAKAANMPKDNIKRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ +AS++ + E YE YG GGV+I+VE LTD R+ ++VR + GG MA G+V
Sbjct: 70 LDKASDRDAANYDEVTYEGYGPGGVAILVEALTDNRNRTSSSVRVAITRHGGNMAAAGAV 129
Query: 203 MFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R V++ + D D+DQ+L+ AL+AGAED+ DD Y++ +
Sbjct: 130 SYMFDRKGYLVISREAYDVDEDQMLEDALEAGAEDM----QTSDDA--------YEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ + L E G F N ++P + + +E + +I +L + DDV VYT
Sbjct: 178 PKEFAQVRDALEEKGYKF-VQNELTMVPQNLTPIPKDKVEQFQAMIDQLEDDDDVQEVYT 236
>gi|238854833|ref|ZP_04645163.1| conserved hypothetical protein [Lactobacillus jensenii 269-3]
gi|260664120|ref|ZP_05864973.1| conserved hypothetical protein [Lactobacillus jensenii SJ-7A-US]
gi|313472336|ref|ZP_07812828.1| glucose-1-phosphate adenylyltransferase [Lactobacillus jensenii
1153]
gi|238832623|gb|EEQ24930.1| conserved hypothetical protein [Lactobacillus jensenii 269-3]
gi|239529808|gb|EEQ68809.1| glucose-1-phosphate adenylyltransferase [Lactobacillus jensenii
1153]
gi|260562006|gb|EEX27975.1| conserved hypothetical protein [Lactobacillus jensenii SJ-7A-US]
Length = 242
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 130/240 (54%), Gaps = 15/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K GGP+P+ N L V++KA+ ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKLSREIYMAAKSGGPDPSGNPALRLVMDKARAANMPKDNIQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A E + E YE Y GGV+++VE LTD R+ +VR GG M GSV
Sbjct: 70 IKKAEGGSDEHYDEITYEGYAPGGVAVLVEALTDNKNRTATSVRTAFTRNGGSMGSTGSV 129
Query: 203 MFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R V++ TDAD+DQ+L +DAGA+D+ DD Y++ +
Sbjct: 130 AYMFDRKGYIVIDRSTTDADEDQMLMDVMDAGADDL----QTSDDA--------YEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ +T + L +AG D ++P T V + E + LI L + DDV VYT
Sbjct: 178 AKEFTGVRDALEKAGYKL-ADAELTMIPQNTTPVPADKKEQFEHLIDALEDDDDVSNVYT 236
>gi|229551834|ref|ZP_04440559.1| protein of hypothetical function DUF28 [Lactobacillus rhamnosus
LMS2-1]
gi|423078975|ref|ZP_17067650.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
rhamnosus ATCC 21052]
gi|229314778|gb|EEN80751.1| protein of hypothetical function DUF28 [Lactobacillus rhamnosus
LMS2-1]
gi|357548432|gb|EHJ30296.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
rhamnosus ATCC 21052]
Length = 249
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 85/240 (35%), Positives = 136/240 (56%), Gaps = 15/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K+GGP+P+ N L V++KAK ++PKD ++R
Sbjct: 16 IQGRKNAQDAKRGKIFQKLSRELYMAAKQGGPDPSGNPSLRLVMDKAKAANMPKDNIKRA 75
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ +AS++ + E YE YG GGV+I+VE LTD R+ ++VR + GG MA G+V
Sbjct: 76 LDKASDRDAANYDEVTYEGYGPGGVAILVEALTDNRNRTSSSVRVAITRHGGNMAAAGAV 135
Query: 203 MFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R V++ + D D+DQ+L+ AL+AGAED+ DD Y++ +
Sbjct: 136 SYMFDRKGYLVISREAYDVDEDQMLEDALEAGAEDM----QTSDDA--------YEIYTD 183
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ + L E G F N ++P + + +E + +I +L + DDV VYT
Sbjct: 184 PKEFAQVRDALEEKGYKF-VQNELTMVPQNLTPIPKDKVEQFQAMIDQLEDDDDVQEVYT 242
>gi|399517453|ref|ZP_10759003.1| hypothetical protein Q5C_10070 [Leuconostoc pseudomesenteroides
4882]
gi|398647577|emb|CCJ67030.1| hypothetical protein Q5C_10070 [Leuconostoc pseudomesenteroides
4882]
Length = 240
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 131/241 (54%), Gaps = 16/241 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ ++ A K GG +P N L V+EKAK ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKLAHDLYVAAKAGGADPEMNASLRLVVEKAKAANMPKDNIQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ +AS G F E YE YG GV+++VE TD I R+V+ VR K GG + GSV
Sbjct: 70 LDKASGAGGAKFEEVTYEGYGTAGVAVLVEASTDNINRTVSTVRNSFKHAGGALGTSGSV 129
Query: 203 MFKFRRARVVNI---KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
F+F R + I + D D+D +L+ AL+AGAEDV A+ +++ +
Sbjct: 130 AFQFDRKGYLAIDREAYPDLDEDTVLEAALEAGAEDV------------QTADEVFEIYT 177
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
++ + L EAG FE D ++ + + DE E L+ +L E +DV AVY
Sbjct: 178 DPADFQAVEGALTEAGFVFE-DAEITMIAQNPMTITDEDREKLDHLVDELEENEDVLAVY 236
Query: 320 T 320
T
Sbjct: 237 T 237
>gi|366086385|ref|ZP_09452870.1| hypothetical protein LzeaK3_04013 [Lactobacillus zeae KCTC 3804]
Length = 243
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 83/240 (34%), Positives = 136/240 (56%), Gaps = 15/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K+GGP+P+ N L V++KAK ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKLSRELYMAAKQGGPDPSGNPSLRLVMDKAKAANMPKDNIKRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ +AS++ + E YE YG GGV+I+VE LTD R+ ++VR + GG MA G+V
Sbjct: 70 LDKASDRDAANYDEVTYEGYGPGGVAILVEALTDNRNRTSSSVRVAITRHGGNMAAAGAV 129
Query: 203 MFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R V++ + D D+DQ+L+ AL+AGAED+ ++ Y++ +
Sbjct: 130 SYMFDRKGYLVISREDFDVDEDQMLEDALEAGAEDM------------QTSDEAYEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ + L E G F N ++P + + +E + +I +L + DDV VYT
Sbjct: 178 PKEFAQVRDALEEKGYKF-VQNELTMVPQNLTPIPKDKVEQFQAMIDQLEDDDDVQEVYT 236
>gi|325295278|ref|YP_004281792.1| yeeN [Desulfurobacterium thermolithotrophum DSM 11699]
gi|325065726|gb|ADY73733.1| UPF0082 protein yeeN [Desulfurobacterium thermolithotrophum DSM
11699]
Length = 247
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 138/242 (57%), Gaps = 14/242 (5%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAK+ K+Y+++ +E+ A ++GG +P +N L A +E+A++ ++PK+ +E
Sbjct: 8 ANIRHRKAAQDAKRGKIYTKLAREITVAAREGGGDPETNPRLRAAIERARKFNMPKENIE 67
Query: 141 RNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IKR + E EA+ E YE YG GGV+I+V+ LTD R+ A VR GG +
Sbjct: 68 RAIKRGTGEIAGEAYEEVTYEGYGPGGVAIIVKCLTDNRNRTAAEVRHAFSKHGGNLGTS 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
G V + F R ++ I + D+D ++ ++AGA+DV+ + E Y+ V +
Sbjct: 128 GCVSWMFERKGIITIPAENYDEDTVMMAVIEAGADDVV------------KEESYFVVYT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ + D+ + +AG+ E ++ +L+P T V+ E +L+ L +LDDV VY
Sbjct: 176 QAQDLEDVRKAILDAGLEIE-ESKLDLIPQNTTRVEGETALKVLKLLEALEDLDDVQEVY 234
Query: 320 TD 321
++
Sbjct: 235 SN 236
>gi|218288868|ref|ZP_03493119.1| protein of unknown function DUF28 [Alicyclobacillus acidocaldarius
LAA1]
gi|218240957|gb|EED08134.1| protein of unknown function DUF28 [Alicyclobacillus acidocaldarius
LAA1]
Length = 247
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 83/240 (34%), Positives = 138/240 (57%), Gaps = 14/240 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA + +L++++ K++ A ++GG NP +N L +E+A+ ++P + ++R
Sbjct: 10 IQRRKGKQDAIRGQLFTKLSKDIYQAAREGGGNPETNFRLRVAIERARANNLPMENIQRT 69
Query: 143 IKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
I +A+ + + A + E +YE YG GV++++E+LTD R+ A VR + + GG +A+ G+
Sbjct: 70 IAKATGQLEGATYEELLYEGYGPHGVALLLEILTDNRNRTAAEVRHLFRKHGGNLAESGA 129
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
V + F R + + D D L+ +AL+AGAEDVIE R Y V +T
Sbjct: 130 VAWMFNRFGEIVVPKDKVDADDLMMVALEAGAEDVIE------------RSRTYVVKTTP 177
Query: 262 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
DN+ + L E GIP+E + T +++ +EA+E +L+ L LDDV VYT+
Sbjct: 178 DNFRAVRLSLEERGIPYE-EASLTYEASTKMDLPEEALEQVYDLVEALESLDDVQTVYTN 236
>gi|258512081|ref|YP_003185515.1| hypothetical protein Aaci_2117 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257478807|gb|ACV59126.1| protein of unknown function DUF28 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 247
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 139/240 (57%), Gaps = 14/240 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA + +L++++ K++ A ++GG NP +N L +E+A+ ++P + ++R
Sbjct: 10 IQRRKGKQDAIRGQLFTKLSKDIYQAAREGGGNPETNFRLRVAIERARANNLPMENIQRT 69
Query: 143 IKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
I +A+ + + A + E +YE YG GV++++E+LTD R+ A VR + + GG +A+ G+
Sbjct: 70 IAKATGQLEGATYEELLYEGYGPHGVALLLEILTDNRNRTAAEVRHLFRKHGGNLAESGA 129
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
V + F+R + + D D L+ +AL+AGAEDVIE R Y V +T
Sbjct: 130 VAWMFQRFGEIVVPKDKVDADDLMMVALEAGAEDVIE------------RSRTYVVKTTP 177
Query: 262 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
DN+ + L E GIP+E + T +++ +EA+E +L+ L LDDV V+T+
Sbjct: 178 DNFRAVRMSLEEKGIPYE-EASLTYEASTKMDLPEEALEQVYDLVEALESLDDVQTVFTN 236
>gi|406593101|ref|YP_006740280.1| hypothetical protein B712_0192 [Chlamydia psittaci NJ1]
gi|405788973|gb|AFS27715.1| hypothetical protein B712_0192 [Chlamydia psittaci NJ1]
Length = 238
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 132/234 (56%), Gaps = 12/234 (5%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
RK D K+ K++SR KE+++AVK GGP+P +N L V++KAK+ ++P + +ERN+K+
Sbjct: 13 RKERADHKRGKIFSRTIKELMAAVKMGGPDPKTNARLRVVIQKAKDQNIPSENIERNLKK 72
Query: 146 ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 205
A+ Q+ F YE+YG+GGV I+VE +TD R+ + +R V GG + +PGSV++
Sbjct: 73 ATSADQKNFENVTYELYGHGGVGIIVEAMTDNKNRTASDMRIAVNKRGGSLVEPGSVLYN 132
Query: 206 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 265
F R + + D+ LL +D GAED+ D D+D ++ V+
Sbjct: 133 FVRKGACYVPKSSIDEAALLSYVIDVGAEDL--------DNDDD---EHFLVLCDPVELA 181
Query: 266 DITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ KL G+ ++ +P+ ++ D++ E N LI L ++DDVD VY
Sbjct: 182 SVKEKLISLGVTC-SEEKLIYVPLRLVDCDEQDGEANLALIEWLEKIDDVDEVY 234
>gi|29839936|ref|NP_829042.1| hypothetical protein CCA00169 [Chlamydophila caviae GPIC]
gi|33516988|sp|Q824H7.1|Y169_CHLCV RecName: Full=Probable transcriptional regulatory protein CCA_00169
gi|29834283|gb|AAP04920.1| conserved hypothetical protein TIGR01033 [Chlamydophila caviae
GPIC]
Length = 238
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 133/234 (56%), Gaps = 12/234 (5%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
RK D K+ K++SR KE+++AVK GGP+P +N L V++KAK+ ++P + +ERN+K+
Sbjct: 13 RKERADHKRGKIFSRTIKELMAAVKMGGPDPKTNARLRVVIQKAKDQNIPNENIERNLKK 72
Query: 146 ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 205
A+ Q+ F + YE+YG+GGV I+VE +TD R+ + +R V GG + +PGSV++
Sbjct: 73 ATSADQKNFEDVTYELYGFGGVGIIVEAMTDNKNRTASDMRIAVNKRGGSLVEPGSVLYN 132
Query: 206 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 265
F R I + D+ LL +D GAED+ D+ DE+ + V+
Sbjct: 133 FARKGACYISKSSIDEATLLSHVIDVGAEDL-------DNDDEEN----FIVLCDPVELA 181
Query: 266 DITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ KL G+ ++ +P+ ++ D++ E N LI L ++DDVD VY
Sbjct: 182 SVKEKLVALGVTC-SEEKLIYVPLRLVDCDEKDGEANLALIEWLEQIDDVDEVY 234
>gi|326693749|ref|ZP_08230754.1| hypothetical protein LargK3_08591 [Leuconostoc argentinum KCTC
3773]
Length = 240
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 134/241 (55%), Gaps = 16/241 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ ++ A K GG +P N L V+EKAK ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKLAHDLYVAAKAGGADPNMNPSLRLVVEKAKAANMPKDNIQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ +AS G + F E YE YG GV+I+VE TD I R+V+++R K GG + GSV
Sbjct: 70 LDKASGAGGQKFEEVTYEGYGTAGVAILVEASTDNINRTVSSIRNSFKHFGGALGTSGSV 129
Query: 203 MFKFRRARVVNIK---FTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
F+F R + I F D D+D +L+ AL+AGAEDV + +++ +
Sbjct: 130 AFQFDREGYLAINRADFPDLDEDTVLEAALEAGAEDV------------QTQDEVFEIYT 177
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
T+ ++ + + + A FE + ++ E+ DE E +L+ +L E +DV AVY
Sbjct: 178 TAADFQAVESAMTAARYVFEEAEVT-MIAQNPAEISDEDREKLDKLVDELEENEDVLAVY 236
Query: 320 T 320
T
Sbjct: 237 T 237
>gi|313115677|ref|ZP_07801132.1| conserved hypothetical protein TIGR01033 [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310622004|gb|EFQ05504.1| conserved hypothetical protein TIGR01033 [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 267
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/256 (33%), Positives = 140/256 (54%), Gaps = 14/256 (5%)
Query: 65 VRTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAA 124
+R R P+ + + I +K D KAK+++++G+E+ AV+ GGPNP SN+ LA
Sbjct: 14 LRIYRRLFPMSGHSKWNNIKRKKEKTDGAKAKVFTKIGREISVAVRTGGPNPASNSKLAD 73
Query: 125 VLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAA 184
++ KAK + VP D ++R IK+A + + YE YG GGV+++VE LTD R+ A
Sbjct: 74 LIAKAKRMSVPNDNIQRIIKKAEGGDKTEYEAITYEGYGPGGVAVMVETLTDNRNRTAAD 133
Query: 185 VREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNED 244
+R GG + G V F F + V++I D D D+ + ALDAGAED
Sbjct: 134 LRHYFDKNGGNLGAMGCVGFLFSQKGVIDISLEDKDADEAMMDALDAGAEDF-------- 185
Query: 245 DTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDD-EAMELNK 303
D ED AE + + +NY+ + + E G +D+ + ++P+TT + D + ++L
Sbjct: 186 DASEDAAE----ITTDPENYSAVVKAMEEKGYEILSDDLA-MVPMTTTRLTDPDQLKLMG 240
Query: 304 ELIAKLLELDDVDAVY 319
+L+ L + DDV V+
Sbjct: 241 KLLDALEDNDDVQNVW 256
>gi|329942487|ref|ZP_08291297.1| hypothetical protein G5Q_0182 [Chlamydophila psittaci Cal10]
gi|332287124|ref|YP_004422025.1| hypothetical protein CPSIT_0191 [Chlamydophila psittaci 6BC]
gi|384450270|ref|YP_005662870.1| hypothetical protein G5O_0194 [Chlamydophila psittaci 6BC]
gi|384451275|ref|YP_005663873.1| hypothetical protein CPS0A_0196 [Chlamydophila psittaci 01DC11]
gi|384452251|ref|YP_005664848.1| hypothetical protein CPS0D_0191 [Chlamydophila psittaci 08DC60]
gi|384453225|ref|YP_005665821.1| hypothetical protein CPS0C_0193 [Chlamydophila psittaci C19/98]
gi|384454203|ref|YP_005666798.1| hypothetical protein CPS0B_0193 [Chlamydophila psittaci 02DC15]
gi|392376377|ref|YP_004064155.1| conserved hypothetical protein [Chlamydophila psittaci RD1]
gi|406591989|ref|YP_006739169.1| hypothetical protein B711_0197 [Chlamydia psittaci CP3]
gi|406594190|ref|YP_006741321.1| hypothetical protein B599_0192 [Chlamydia psittaci MN]
gi|407453660|ref|YP_006732768.1| hypothetical protein B595_0196 [Chlamydia psittaci 84/55]
gi|407454991|ref|YP_006733882.1| hypothetical protein B598_0191 [Chlamydia psittaci GR9]
gi|407456360|ref|YP_006734933.1| hypothetical protein B600_0203 [Chlamydia psittaci VS225]
gi|407457724|ref|YP_006736029.1| hypothetical protein B601_0189 [Chlamydia psittaci WS/RT/E30]
gi|407460341|ref|YP_006738116.1| hypothetical protein B603_0192 [Chlamydia psittaci WC]
gi|410858154|ref|YP_006974094.1| conserved hypothetical protein [Chlamydia psittaci 01DC12]
gi|449070818|ref|YP_007437898.1| hypothetical protein AO9_00905 [Chlamydophila psittaci Mat116]
gi|313847720|emb|CBY16710.1| conserved hypothetical protein [Chlamydophila psittaci RD1]
gi|325507125|gb|ADZ18763.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]
gi|328815397|gb|EGF85385.1| hypothetical protein G5Q_0182 [Chlamydophila psittaci Cal10]
gi|328914364|gb|AEB55197.1| conserved hypothetical protein TIGR01033 [Chlamydophila psittaci
6BC]
gi|334692006|gb|AEG85225.1| conserved hypothetical protein [Chlamydophila psittaci C19/98]
gi|334692985|gb|AEG86203.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]
gi|334693960|gb|AEG87177.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]
gi|334694940|gb|AEG88156.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]
gi|405780419|gb|AFS19169.1| hypothetical protein B595_0196 [Chlamydia psittaci 84/55]
gi|405781534|gb|AFS20283.1| hypothetical protein B598_0191 [Chlamydia psittaci GR9]
gi|405782622|gb|AFS21370.1| hypothetical protein B599_0192 [Chlamydia psittaci MN]
gi|405783621|gb|AFS22368.1| hypothetical protein B600_0203 [Chlamydia psittaci VS225]
gi|405784767|gb|AFS23513.1| hypothetical protein B601_0189 [Chlamydia psittaci WS/RT/E30]
gi|405787196|gb|AFS25940.1| hypothetical protein B603_0192 [Chlamydia psittaci WC]
gi|405787861|gb|AFS26604.1| hypothetical protein B711_0197 [Chlamydia psittaci CP3]
gi|410811049|emb|CCO01692.1| conserved hypothetical protein [Chlamydia psittaci 01DC12]
gi|449039326|gb|AGE74750.1| hypothetical protein AO9_00905 [Chlamydophila psittaci Mat116]
Length = 238
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 132/234 (56%), Gaps = 12/234 (5%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
RK D K+ K++SR KE+++AVK GGP+P +N L V++KAK+ ++P + +ERN+K+
Sbjct: 13 RKERADHKRGKIFSRTIKELMAAVKMGGPDPKTNARLRVVIQKAKDQNIPSENIERNLKK 72
Query: 146 ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 205
A+ Q+ F YE+YG+GGV I+VE +TD R+ + +R V GG + +PGSV++
Sbjct: 73 ATSADQKNFENVTYELYGHGGVGIIVEAMTDNKNRTASDMRIAVNKRGGSLVEPGSVLYN 132
Query: 206 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 265
F R + + D+ LL +D GAED+ D D+D ++ V+
Sbjct: 133 FVRKGACYVPKSSIDEAALLSYVIDVGAEDL--------DNDDD---EHFLVLCDPVELA 181
Query: 266 DITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ KL G+ ++ +P+ ++ D++ E N LI L ++DDVD VY
Sbjct: 182 SVKEKLIALGVTC-SEEKLIYVPLRLVDCDEQDGEANLALIEWLEKIDDVDEVY 234
>gi|339497661|ref|ZP_08658637.1| hypothetical protein LpseK3_16109 [Leuconostoc pseudomesenteroides
KCTC 3652]
Length = 240
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 131/241 (54%), Gaps = 16/241 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ ++ A K GG +P N L V+EKAK ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKLAHDLYVAAKAGGADPEMNASLRLVVEKAKAANMPKDNIQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ +AS G F E YE YG GV+++VE TD I R+V+ VR K GG + GSV
Sbjct: 70 LDKASGAGGAKFEEVTYEGYGTAGVAVLVEASTDNINRTVSTVRNSFKHAGGALGTSGSV 129
Query: 203 MFKFRRARVVNI---KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
F+F R + I + + D+D +L+ AL+AGAEDV A+ +++ +
Sbjct: 130 AFQFDRKGYLAIDREAYPNLDEDTVLEAALEAGAEDV------------QTADEVFEIYT 177
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
++ + L EAG FE D ++ + + DE E L+ +L E +DV AVY
Sbjct: 178 DPADFQTVEGALTEAGFVFE-DAEITMIAQNPMTITDEDREKLDHLVDELEENEDVLAVY 236
Query: 320 T 320
T
Sbjct: 237 T 237
>gi|256851420|ref|ZP_05556809.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN]
gi|260660841|ref|ZP_05861756.1| UPF0082 protein [Lactobacillus jensenii 115-3-CHN]
gi|297206234|ref|ZP_06923629.1| glucose-1-phosphate adenylyl transferase [Lactobacillus jensenii
JV-V16]
gi|256616482|gb|EEU21670.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN]
gi|260548563|gb|EEX24538.1| UPF0082 protein [Lactobacillus jensenii 115-3-CHN]
gi|297149360|gb|EFH29658.1| glucose-1-phosphate adenylyl transferase [Lactobacillus jensenii
JV-V16]
Length = 242
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/240 (35%), Positives = 130/240 (54%), Gaps = 15/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K GGP+P+ N L V++KA+ ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKLSREIYMAAKSGGPDPSGNPALRLVMDKARAANMPKDNIQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A +E + E YE Y GGV+++VE LTD R+ +VR GG + GSV
Sbjct: 70 IKKAEGGSEEHYDEITYEGYAPGGVAVLVEALTDNKNRTATSVRTAFTRNGGSLGATGSV 129
Query: 203 MFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R V++ TDAD+DQ+L +DAGA+D+ DD Y++ +
Sbjct: 130 AYMFDRKGYIVIDRSTTDADEDQMLMDVMDAGADDL----QTSDDA--------YEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ +T + L +AG D ++P T V + E LI L + DDV VYT
Sbjct: 178 AKEFTGVRDALEKAGYKL-ADAELTMIPQNTTPVPADKKEQFAHLIDALEDDDDVSNVYT 236
>gi|330717916|ref|ZP_08312516.1| hypothetical protein LfalK3_00115 [Leuconostoc fallax KCTC 3537]
Length = 241
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/243 (36%), Positives = 137/243 (56%), Gaps = 19/243 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ ++ A K GG +P N L V++KAK ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKLAHDLYVAAKAGGADPEMNASLRLVVDKAKAANMPKDNIQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ +AS G F E YE YG GV+++VE TD I R+V+ VR K GG + GSV
Sbjct: 70 LDKASGAGGAKFEEVTYEGYGPAGVAVLVEASTDNINRTVSTVRNSFKHYGGSLGTSGSV 129
Query: 203 MFKFRRARVVNI---KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
F+F R + I F + D+D +L+ AL+AGAEDV ++ +++ +
Sbjct: 130 AFQFDRKGYLAIDRTAFPELDEDTILEAALEAGAEDV------------QTSDEAFEIYT 177
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDVDA 317
++ I + L EAG FE + + P+T + DD+ +L+K L+ +L + +DV A
Sbjct: 178 EPGDFQSIESALTEAGYSFEESEVTMIAQNPMTDLS-DDDQEKLDK-LVDELEDNEDVLA 235
Query: 318 VYT 320
VYT
Sbjct: 236 VYT 238
>gi|62184810|ref|YP_219595.1| hypothetical protein CAB166 [Chlamydophila abortus S26/3]
gi|424824859|ref|ZP_18249846.1| hypothetical protein CAB1_0177 [Chlamydophila abortus LLG]
gi|81313011|sp|Q5L6U7.1|Y166_CHLAB RecName: Full=Probable transcriptional regulatory protein CAB166
gi|62147877|emb|CAH63624.1| conserved hypothetical protein [Chlamydophila abortus S26/3]
gi|333409958|gb|EGK68945.1| hypothetical protein CAB1_0177 [Chlamydophila abortus LLG]
Length = 238
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/236 (33%), Positives = 133/236 (56%), Gaps = 12/236 (5%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
RK D K+ K++SR KE+++AVK GGP+P +N L +++KAK+ ++P + +ERN+K+
Sbjct: 13 RKERADHKRGKIFSRTIKELMAAVKMGGPDPKTNARLRMIIQKAKDQNIPNENIERNLKK 72
Query: 146 ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 205
A+ Q+ F YE+YG+GGV I+VE +TD R+ + +R V GG + +PGSV++
Sbjct: 73 ATSADQKNFENVTYELYGHGGVGIIVEAMTDNKNRTASDMRIAVNKRGGSLVEPGSVLYN 132
Query: 206 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 265
F R + + D+ LL +D GAED+ D D+D ++ V+
Sbjct: 133 FVRKGACYVPKSSIDEAVLLPHVIDVGAEDL--------DNDDD---EHFLVLCDPVELA 181
Query: 266 DITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ KL G+ ++ +P+ ++ D++ E N LI L ++DDVD VY +
Sbjct: 182 SVKEKLTALGVAC-SEEKLIYVPLRLVDCDEQDGEANLALIEWLEKIDDVDEVYHN 236
>gi|304440194|ref|ZP_07400084.1| glucose-1-phosphate adenylyltransferase [Peptoniphilus duerdenii
ATCC BAA-1640]
gi|304371243|gb|EFM24859.1| glucose-1-phosphate adenylyltransferase [Peptoniphilus duerdenii
ATCC BAA-1640]
Length = 246
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 141/246 (57%), Gaps = 16/246 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +KG +DA++ K+++++G+ ++ A K+GGP+P N L ++KAK ++P D
Sbjct: 6 KWNNIKNKKGKEDARRGKIFTKLGRYIMVAAKEGGPDPEYNASLKVAIDKAKAENMPNDN 65
Query: 139 VERNIKRA-SEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ER IK+ E GQ+ F E YE YG G++++V+ LTD R+ VR GG +
Sbjct: 66 IERAIKKGCGELGQDNFEEITYEGYGPSGIAVMVKCLTDNRNRTAPEVRHAFDKNGGNLG 125
Query: 198 DPGSVMFKF-RRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
PG V F F ++ ++ +K + D+++ + +ALD GAEDVI D D A ++
Sbjct: 126 QPGCVSFMFEKKGQLGVLKHENVDEEEFMLLALDLGAEDVI---------DRDEA---FE 173
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEA-MELNKELIAKLLELDDV 315
++++ ++Y ++ L E G F + LP E+ DE ++L ++LI L + DDV
Sbjct: 174 IITSPESYEEVRDGLEENGYEF-VQSDITFLPSNYTELTDENDIKLMEKLIDTLEDNDDV 232
Query: 316 DAVYTD 321
VYT+
Sbjct: 233 QDVYTN 238
>gi|191637963|ref|YP_001987129.1| hypothetical protein LCABL_11860 [Lactobacillus casei BL23]
gi|227535500|ref|ZP_03965549.1| protein of hypothetical function DUF28 [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|239631878|ref|ZP_04674909.1| hypothetical protein LBPG_00793 [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|301066047|ref|YP_003788070.1| hypothetical protein LCAZH_0977 [Lactobacillus casei str. Zhang]
gi|385819712|ref|YP_005856099.1| hypothetical protein LC2W_1181 [Lactobacillus casei LC2W]
gi|385822866|ref|YP_005859208.1| hypothetical protein LCBD_1169 [Lactobacillus casei BD-II]
gi|409996825|ref|YP_006751226.1| transcriptional regulatory protein [Lactobacillus casei W56]
gi|417980228|ref|ZP_12620909.1| hypothetical protein LCA12A_2314 [Lactobacillus casei 12A]
gi|417983099|ref|ZP_12623741.1| hypothetical protein LCA211_0428 [Lactobacillus casei 21/1]
gi|417986308|ref|ZP_12626880.1| hypothetical protein LCA32G_0649 [Lactobacillus casei 32G]
gi|417989243|ref|ZP_12629754.1| hypothetical protein LCAA2362_2696 [Lactobacillus casei A2-362]
gi|417992570|ref|ZP_12632925.1| hypothetical protein LCACRF28_0433 [Lactobacillus casei CRF28]
gi|417995801|ref|ZP_12636088.1| hypothetical protein LCAM36_2592 [Lactobacillus casei M36]
gi|417998737|ref|ZP_12638952.1| hypothetical protein LCAT71499_0577 [Lactobacillus casei T71499]
gi|418001643|ref|ZP_12641780.1| hypothetical protein LCAUCD174_1058 [Lactobacillus casei UCD174]
gi|418004731|ref|ZP_12644743.1| hypothetical protein LCAUW1_1014 [Lactobacillus casei UW1]
gi|418007629|ref|ZP_12647508.1| hypothetical protein LCAUW4_0946 [Lactobacillus casei UW4]
gi|418010435|ref|ZP_12650212.1| hypothetical protein LCALC10_0959 [Lactobacillus casei Lc-10]
gi|418013394|ref|ZP_12653038.1| hypothetical protein LCALPC37_1006 [Lactobacillus casei Lpc-37]
gi|226696264|sp|B3WD20.1|Y1186_LACCB RecName: Full=Probable transcriptional regulatory protein
LCABL_11860
gi|190712265|emb|CAQ66271.1| UPF0082 protein LSEI_1022 [Lactobacillus casei BL23]
gi|227186822|gb|EEI66889.1| protein of hypothetical function DUF28 [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|239526343|gb|EEQ65344.1| hypothetical protein LBPG_00793 [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|300438454|gb|ADK18220.1| conserved hypothetical protein [Lactobacillus casei str. Zhang]
gi|327382039|gb|AEA53515.1| hypothetical protein LC2W_1181 [Lactobacillus casei LC2W]
gi|327385193|gb|AEA56667.1| hypothetical protein LCBD_1169 [Lactobacillus casei BD-II]
gi|406357837|emb|CCK22107.1| Probable transcriptional regulatory protein LCABL_11860
[Lactobacillus casei W56]
gi|410525455|gb|EKQ00357.1| hypothetical protein LCA12A_2314 [Lactobacillus casei 12A]
gi|410526501|gb|EKQ01388.1| hypothetical protein LCA32G_0649 [Lactobacillus casei 32G]
gi|410528880|gb|EKQ03718.1| hypothetical protein LCA211_0428 [Lactobacillus casei 21/1]
gi|410533149|gb|EKQ07836.1| hypothetical protein LCACRF28_0433 [Lactobacillus casei CRF28]
gi|410536505|gb|EKQ11098.1| hypothetical protein LCAM36_2592 [Lactobacillus casei M36]
gi|410538967|gb|EKQ13508.1| hypothetical protein LCAA2362_2696 [Lactobacillus casei A2-362]
gi|410540341|gb|EKQ14856.1| hypothetical protein LCAT71499_0577 [Lactobacillus casei T71499]
gi|410546089|gb|EKQ20360.1| hypothetical protein LCAUCD174_1058 [Lactobacillus casei UCD174]
gi|410548544|gb|EKQ22741.1| hypothetical protein LCAUW4_0946 [Lactobacillus casei UW4]
gi|410548829|gb|EKQ23014.1| hypothetical protein LCAUW1_1014 [Lactobacillus casei UW1]
gi|410553924|gb|EKQ27912.1| hypothetical protein LCALC10_0959 [Lactobacillus casei Lc-10]
gi|410555920|gb|EKQ29851.1| hypothetical protein LCALPC37_1006 [Lactobacillus casei Lpc-37]
Length = 243
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 135/240 (56%), Gaps = 15/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQD+K+ K++ ++ +E+ A K+GGP+P+ N L V++KAK ++PKD ++R
Sbjct: 10 IQGRKNAQDSKRGKIFQKLSRELYMAAKQGGPDPSGNPSLRLVMDKAKAANMPKDNIKRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ +AS++ + E YE YG GGV+I+VE LTD R+ + VR + GG MA G+V
Sbjct: 70 LDKASDRDAANYDEVTYEGYGPGGVAILVEALTDNRNRTSSTVRVAITRHGGNMAAAGAV 129
Query: 203 MFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R V++ D D+DQ+L+ AL+AGAED+ ++ +++ +
Sbjct: 130 SYMFDRKGYLVISRDDLDVDEDQMLEDALEAGAEDM------------QTSDEAFEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ + L E G F N ++P + ++ +E + +I +L + DDV VYT
Sbjct: 178 PKEFAQVRDALEEKGYKF-VQNELTMVPQNLTPIPEDKVEQFQAMIDQLEDDDDVQEVYT 236
>gi|384083301|ref|ZP_09994476.1| hypothetical protein gproHI_08296 [gamma proteobacterium HIMB30]
Length = 247
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 90/243 (37%), Positives = 140/243 (57%), Gaps = 17/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +K AQDAK+ K+++++ +E+ A K GG P N L A ++KA ++ KD ++
Sbjct: 8 ANIKHKKAAQDAKRGKIFTKLIREITVAAKMGGGEPADNPRLRAAVDKALSANMTKDTIQ 67
Query: 141 RNIKRASEKGQEAFIEK-VYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I R + G +E+ VYE YG GGV+++VEV+TD R+VA VR CGG +
Sbjct: 68 RAIDRGAGGGDNDNVEELVYEGYGPGGVAVLVEVMTDNKNRTVAEVRHAFSKCGGNLGTD 127
Query: 200 GSVMFKF-RRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
GSV + F +R +++ +AD+D +++ ALDAGAEDVI +DD V
Sbjct: 128 GSVAYLFTKRGQIL---IDNADEDLVMEAALDAGAEDVI----GQDDG-------LIDVA 173
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+T ++ D+ L +GI + + L+P TT E+D+E+ +LI L +LDDV V
Sbjct: 174 TTQNDVVDVKDALLASGIEIVSAEVA-LVPSTTAELDEESAPKVMKLIDMLEDLDDVQNV 232
Query: 319 YTD 321
YT+
Sbjct: 233 YTN 235
>gi|116494525|ref|YP_806259.1| hypothetical protein LSEI_1022 [Lactobacillus casei ATCC 334]
gi|122264049|sp|Q03AF5.1|Y1022_LACC3 RecName: Full=Probable transcriptional regulatory protein LSEI_1022
gi|116104675|gb|ABJ69817.1| hypothetical protein LSEI_1022 [Lactobacillus casei ATCC 334]
Length = 243
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 135/240 (56%), Gaps = 15/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQD+K+ K++ ++ +E+ A K+GGP+P+ N L V++KAK ++PKD ++R
Sbjct: 10 IQGRKNAQDSKRGKIFQKLSRELYMAAKQGGPDPSGNPSLRLVMDKAKAANMPKDNIKRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ +AS++ + E YE YG GGV+I+VE LTD R+ + VR + GG MA G+V
Sbjct: 70 LDKASDRDAANYDEVTYEGYGPGGVAILVEALTDNRNRTSSTVRVAITRHGGNMAAAGAV 129
Query: 203 MFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R V++ D D+DQ+L+ AL+AGAED+ ++ +++ +
Sbjct: 130 SYMFDRKGYLVISRDDLDVDEDQMLEDALEAGAEDM------------QTSDEAFEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ + L E G F N ++P + ++ +E + +I +L + DDV VYT
Sbjct: 178 PKEFAQVRDALEEKGYKF-VQNELTMVPQNLTPIPEDKVEKFQAMIDQLEDDDDVQEVYT 236
>gi|268317946|ref|YP_003291665.1| hypothetical protein Rmar_2399 [Rhodothermus marinus DSM 4252]
gi|345304226|ref|YP_004826128.1| hypothetical protein Rhom172_2398 [Rhodothermus marinus
SG0.5JP17-172]
gi|262335480|gb|ACY49277.1| protein of unknown function DUF28 [Rhodothermus marinus DSM 4252]
gi|345113459|gb|AEN74291.1| protein of unknown function DUF28 [Rhodothermus marinus
SG0.5JP17-172]
Length = 248
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 137/242 (56%), Gaps = 16/242 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
SK+ +K DA+K+K+++R+ +++I A ++GG +P +N LA +E+A+ ++PK+ +E
Sbjct: 8 SKVKRQKAVVDARKSKIWARLSRDIIVAAREGGGDPEANPRLAQAIERARAENMPKENIE 67
Query: 141 RNIKRASEKGQ-EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IKR + + Q E ++E YE Y GGV++ +E LTD R+V+ +R + GG + P
Sbjct: 68 RAIKRGTGEIQGEDYVEVTYEGYAPGGVAVFIEALTDNTNRTVSEIRHLFTKAGGSLGQP 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F R V+ I D+ +L ++ +AGAED+ +DDT + V +
Sbjct: 128 GSVAYLFERKGVIEIPVEGHDELELFELVAEAGAEDL----TKDDDT--------FVVTT 175
Query: 260 TSDNYTDITTKLREAGI-PFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+ ++D+ LR AGI P E G + +P TT+ + E + L+ L DV V
Sbjct: 176 PVETFSDVLEALRSAGIEPVEA--GLQRVPTTTVTLPPEEAKKVVALLEALEAHQDVQNV 233
Query: 319 YT 320
YT
Sbjct: 234 YT 235
>gi|336323918|ref|YP_004603885.1| hypothetical protein Flexsi_1670 [Flexistipes sinusarabici DSM
4947]
gi|336107499|gb|AEI15317.1| UPF0082 protein yeeN [Flexistipes sinusarabici DSM 4947]
Length = 247
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 88/244 (36%), Positives = 137/244 (56%), Gaps = 14/244 (5%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RK AQDAKK K+++++ KE+ A K GG +P N L L+KAK +++PKD
Sbjct: 6 KWANIKHRKAAQDAKKGKVFTKVAKEITVAAKLGGGDPEMNPRLRMALDKAKAVNLPKDN 65
Query: 139 VERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
V+R IK+ + +G EA E V YE YG GV+I+V+ LTD R+V+ VR + G M
Sbjct: 66 VDRAIKKGTGEGNEANFEDVMYEGYGPEGVAILVQALTDNKNRTVSEVRSTMAKKNGNMG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
+ G V + F + V++I + +DQ++ +A+DAGAEDV +T +D Y++
Sbjct: 126 EAGCVSWIFEKKGVISIPLNNVGEDQIMSLAIDAGAEDV--------ETGDDS----YEI 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ +Y ++ + I +E + + P TTIEV + LI L +LDDV
Sbjct: 174 ICDPADYEEVKKTIESESISYEYAEVT-MRPKTTIEVKGNNAKKVINLIEALEDLDDVQE 232
Query: 318 VYTD 321
VY +
Sbjct: 233 VYAN 236
>gi|422295822|gb|EKU23121.1| hypothetical protein NGA_0690700 [Nannochloropsis gaditana CCMP526]
Length = 317
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 155/296 (52%), Gaps = 29/296 (9%)
Query: 27 PNSFALSKHGLLSRNLFSSASSISSWIPLYEVK-HCNFQVRTIRTFAPVCMGRRSSKIAG 85
P A S G+L+ + S + +PL + + CN R R F MGRR++K A
Sbjct: 34 PPEAATSAPGILADTM-----SGNVCLPLRQPQPRCN---RLNRLF----MGRRAAKNAA 81
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
RKG DA K K+Y+ GK+++ AVK GGP+P N LA ++ +AK VP D V+R I+R
Sbjct: 82 RKGKSDALKTKVYATYGKKLVMAVKAGGPDPEVNRALAVMIREAKAQGVPSDNVQRAIQR 141
Query: 146 ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 205
S + + E VYE YGYGG +++ LTD R+ + V+K K+A GSV F
Sbjct: 142 GSNANEADYKEAVYEAYGYGGAGLIINCLTDNTNRAKTEISNVIKKTDVKLATSGSVAFN 201
Query: 206 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 265
F R +++ ++D +L+ AL+A EDV + VNE++ V S +
Sbjct: 202 FDRKGRIDLAGI-VEEDAVLEAALEADVEDV-DTRVNEEE----------GVTSVLVDPA 249
Query: 266 DITTKLREAGIPFETDNGSELL---PITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+++ LRE + + + L+ P ++ DE E N +I L ELDDVD+V
Sbjct: 250 SVSS-LREVFLGKGREIKASLMVNVPKLLMDCSDEDFEGNMSVIEALEELDDVDSV 304
>gi|408374573|ref|ZP_11172258.1| hypothetical protein A11A3_10771 [Alcanivorax hongdengensis A-11-3]
gi|407765531|gb|EKF73983.1| hypothetical protein A11A3_10771 [Alcanivorax hongdengensis A-11-3]
Length = 244
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 138/243 (56%), Gaps = 15/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAK+ K+++++ +E+ A K GGP P N L A ++KA ++ KD ++
Sbjct: 8 ANIKHRKAAQDAKRGKIFTKLIRELTVAAKMGGPEPADNPRLRAAMDKALGQNMTKDTID 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IKR + +E++ YE YG GGV+++VE +TD + R+VA VR G +
Sbjct: 68 RAIKRGAGGDDGGNMEEITYEGYGKGGVAVLVETMTDNVNRTVAEVRHAFSKFAGNLGTS 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV F F + + + D+++L+++AL+AGAEDV E+ + + V++
Sbjct: 128 GSVAFLFTKRGEIFFE-PGVDEEKLMEVALEAGAEDV-----------EEMNDGSFLVIT 175
Query: 260 TSD-NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
T D + ++ LREAG+ F D + P T E+D + E +++I L +LDDV V
Sbjct: 176 TPDKQFGEVVDALREAGLEF-ADAEVTMHPSTEAEMDADTAETVQKMIDMLEDLDDVQNV 234
Query: 319 YTD 321
YT+
Sbjct: 235 YTN 237
>gi|300173549|ref|YP_003772715.1| hypothetical protein LEGAS_1248 [Leuconostoc gasicomitatum LMG
18811]
gi|333446582|ref|ZP_08481524.1| hypothetical protein LinhK3_05654 [Leuconostoc inhae KCTC 3774]
gi|299887928|emb|CBL91896.1| UPF0082 protein [Leuconostoc gasicomitatum LMG 18811]
Length = 240
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 135/241 (56%), Gaps = 16/241 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ ++ A K GG + N L V+EKAK ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKLAHDLYVAAKAGGADTYMNASLRLVVEKAKSANMPKDNIQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ +AS G + F E YE YG GV+++VE TD I R+V+++R K GG + GSV
Sbjct: 70 LDKASGAGGQKFEEVTYEGYGTAGVAVLVETSTDNINRTVSSIRNSFKHFGGALGTSGSV 129
Query: 203 MFKFRRARVVNIK---FTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
F+F R + I F++ D+D +L+ AL+AGAEDV + +++ +
Sbjct: 130 AFQFDRKGYLAIDREIFSELDEDTVLEAALEAGAEDV------------QTQDAVFEIYT 177
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+++ I L EAG F+ + + I DD+ +L ++LI +L E +DV AVY
Sbjct: 178 APNDFQTIEGTLSEAGYVFDEAEVTMIAQNPMIISDDDREKL-EQLIDELEENEDVLAVY 236
Query: 320 T 320
T
Sbjct: 237 T 237
>gi|397906046|ref|ZP_10506871.1| FIG000859: hypothetical protein [Caloramator australicus RC3]
gi|397160806|emb|CCJ34206.1| FIG000859: hypothetical protein [Caloramator australicus RC3]
Length = 246
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 145/245 (59%), Gaps = 15/245 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RKG QDA + KL++++GKE+ AVK+GGPNP +N+ L V+ KAK ++P +
Sbjct: 6 KWANIKHRKGKQDALRGKLFTKIGKEIQVAVKEGGPNPEANSRLRDVIAKAKANNMPMEN 65
Query: 139 VERNIKRASEKGQE-AFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
++R IKRA+ + ++ + E +YE YG GV+++V+ LTD R+ VR + + GG +
Sbjct: 66 IQRAIKRATGELKDVTYEEIIYEGYGPNGVAVIVQALTDNRNRTAGDVRHIFEKFGGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
G V F F + ++ ++ + D+D L+ +ALDAGAED ++ED Y+
Sbjct: 126 ATGCVSFLFEKKGLIIVEKEEGIDEDSLMMMALDAGAEDF--------SSEEDA----YE 173
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
+ ++ ++++ + L GI + S ++P T + +D EA E ++L+ +L E DDV
Sbjct: 174 ITTSPEDFSKVREALENNGIKLASAEVS-MIPSTYVALDGEAAEKFEKLLDRLEENDDVQ 232
Query: 317 AVYTD 321
V+ +
Sbjct: 233 NVWHN 237
>gi|395239403|ref|ZP_10417283.1| UPF0082 protein HMPREF0493_1079 [Lactobacillus gigeriorum CRBIP
24.85]
gi|394476498|emb|CCI87260.1| UPF0082 protein HMPREF0493_1079 [Lactobacillus gigeriorum CRBIP
24.85]
Length = 242
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 88/242 (36%), Positives = 130/242 (53%), Gaps = 19/242 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K GGP+P+ N L V++KA+ ++PKD +ER
Sbjct: 10 IQGRKNAQDAKRGKIFQKLSREIYMAAKSGGPDPSGNPALRLVIDKARSNNMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A +E + E YE Y GGV+++VE LTD R+ +AVR GG + GSV
Sbjct: 70 IKKAEGNSEEHYDEITYEGYAPGGVAVLVEALTDNKNRTASAVRVAFTRNGGSLGATGSV 129
Query: 203 MFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R V++ TDAD+DQ+L +DAG +D+ DD +++ +
Sbjct: 130 AYMFDRKGYIVIDRSTTDADEDQVLLDVMDAGGDDL----QTSDDA--------FEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+ + L ++G SEL LP T V E E + LI L + DDV V
Sbjct: 178 PKQFAQVRDALEKSGYKLAV---SELTMLPQNTTPVPAEKKEQFEHLIDALEDDDDVQNV 234
Query: 319 YT 320
YT
Sbjct: 235 YT 236
>gi|227499848|ref|ZP_03929941.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
gi|227217957|gb|EEI83230.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
Length = 243
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 132/245 (53%), Gaps = 14/245 (5%)
Query: 78 RRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKD 137
+ SKI +KG++DAKK K++++ + + A K+GG NP N L +EKAK ++P D
Sbjct: 5 NKWSKIKNKKGSEDAKKGKIFTKHARNITVAAKEGGTNPDYNPSLKTAIEKAKADNMPND 64
Query: 138 IVERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKM 196
+ER IK+A+ + + F+ +YE YG GGV+++V+ LTD R+ VR GG +
Sbjct: 65 NIERAIKKAAGDDASDNFVRVIYEGYGPGGVAVIVDCLTDNKNRTAPDVRHAFDKNGGNL 124
Query: 197 ADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
GSVMF F R + ++ D D + AL+AG EDV E Y++
Sbjct: 125 GTDGSVMFMFERKGDIIVEKNGKDFDDFMMDALEAGCEDVKEMG------------EYFE 172
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
++ ++ D KL+EAG E+ + S L ++ ++LNK LI L + DDV
Sbjct: 173 AITDVASFNDANDKLKEAGYKIESADISYLANNMISVSEEHVVKLNK-LIDTLEDNDDVQ 231
Query: 317 AVYTD 321
VYT+
Sbjct: 232 EVYTN 236
>gi|319790085|ref|YP_004151718.1| hypothetical protein Theam_1111 [Thermovibrio ammonificans HB-1]
gi|317114587|gb|ADU97077.1| protein of unknown function DUF28 [Thermovibrio ammonificans HB-1]
Length = 247
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 136/242 (56%), Gaps = 14/242 (5%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAK+ K+Y+++ +E+ A ++GG +P +N L A +E+A++ ++PK+ +E
Sbjct: 8 ANIRHRKAAQDAKRGKIYTKLAREITVAAREGGGDPETNPRLRAAIERARKFNMPKENIE 67
Query: 141 RNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IKR + E EA+ E YE YG GGV+I+V+ LTD R+ + VR GG +
Sbjct: 68 RAIKRGTGEIAGEAYEEVTYEGYGPGGVAIIVKCLTDNRNRTASEVRHAFSKHGGNLGTS 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
G V + F R V+ + D++ ++ A+DAGA+DV V EDD + + +
Sbjct: 128 GCVSWMFERKGVITVPADKFDEETVMLAAIDAGADDV----VREDDK--------FVIYT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ L +AGI E + +L+P TT V+ E + +L+ L +LDDV VY
Sbjct: 176 QPTELEAVRKGLLDAGIEVE-EAKLDLIPTTTTRVEGETAQKVLKLLMALEDLDDVQEVY 234
Query: 320 TD 321
++
Sbjct: 235 SN 236
>gi|407458971|ref|YP_006737074.1| hypothetical protein B602_0191 [Chlamydia psittaci M56]
gi|405786192|gb|AFS24937.1| hypothetical protein B602_0191 [Chlamydia psittaci M56]
Length = 238
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 80/236 (33%), Positives = 132/236 (55%), Gaps = 12/236 (5%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
RK D K+ K++SR KE+++AVK GGP+P +N L V++KAK+ ++P + +ERN+K+
Sbjct: 13 RKERADHKRGKIFSRTIKELMAAVKIGGPDPKTNARLRMVIQKAKDQNIPNENIERNLKK 72
Query: 146 ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 205
A+ Q+ F +YE+YG+GGV I+VE +TD R+ + +R V GG + +PGSV++
Sbjct: 73 ATSTDQKNFENVIYELYGHGGVGIIVEAMTDNKNRTASDMRIAVNKRGGSLVEPGSVLYN 132
Query: 206 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 265
F + + D+ LL +D GAED+ D D+D ++ V+
Sbjct: 133 FVHKGACYVPKSSIDEAVLLPYVIDVGAEDL--------DNDDD---EHFLVLCDPVELA 181
Query: 266 DITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ KL G+ + +P+ ++ D++ E N LI L ++DDVD VY +
Sbjct: 182 SVKEKLIALGVSC-AEEKLIYVPLRLVDCDEQDGEANLALIEWLEKIDDVDEVYHN 236
>gi|325266856|ref|ZP_08133527.1| YebC like protein [Kingella denitrificans ATCC 33394]
gi|324981597|gb|EGC17238.1| YebC like protein [Kingella denitrificans ATCC 33394]
Length = 242
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 89/247 (36%), Positives = 139/247 (56%), Gaps = 17/247 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +K QDAK+ K+++++ KE+ A K+GG +P +N L +EKA + ++PKD
Sbjct: 6 KWANIQHKKARQDAKRGKIFTKLIKEITIAAKQGGGDPNANPRLRLAMEKAWDANMPKDN 65
Query: 139 VERNIKRASE--KGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKM 196
V+R I + + +G E +IE YE YG GG +++V+ +TD TR+VA VR GG +
Sbjct: 66 VQRAIDKGTGNLEGVE-YIELRYEGYGIGGAAVMVDCMTDNKTRTVADVRHAFTKNGGNL 124
Query: 197 ADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
G V F F + +T+AD+D L++ AL+AGAEDVI DE E +
Sbjct: 125 GTDGCVAFNFVHQGY--LLYTNADEDALMEAALEAGAEDVI--------ADE---EGVIE 171
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
V++ ++ ++ T L +AG E D + P TT E+ E ++LI L +LDDV
Sbjct: 172 VITAPTDWANVKTALEQAGFKAE-DGDVTMRPQTTTELSGAEAEKMQKLIDALEDLDDVQ 230
Query: 317 AVYTDQI 323
VYT +
Sbjct: 231 NVYTSAV 237
>gi|429204669|ref|ZP_19195952.1| hypothetical protein D271_03170 [Lactobacillus saerimneri 30a]
gi|428146892|gb|EKW99125.1| hypothetical protein D271_03170 [Lactobacillus saerimneri 30a]
Length = 242
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/240 (35%), Positives = 134/240 (55%), Gaps = 16/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K GGP+P SN L +++KA+ ++PKD ++R
Sbjct: 10 IQGRKSAQDAKRGKIFQKISREIYVAAKSGGPDPDSNPQLRLMIDKARSANMPKDNIKRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ +AS G E + E YE YG GV+I+V LTD R+ +AVR GG + + GSV
Sbjct: 70 LDKASGAGGEDYEEITYEGYGPAGVAILVHALTDNRNRTASAVRGDFNRNGGSLGETGSV 129
Query: 203 MFKFRRARVVNI--KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
F F R + I + D D+DQ+ + ++AGAED+ A+ +++ +
Sbjct: 130 SFMFNRKGYIAIAREGLDVDEDQMFEDVIEAGAEDL------------QSADEVFEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+TD+ +L E T + ++P TT+ V ++ +E LI KL + DDV V+T
Sbjct: 178 PKAFTDVKAEL-EKKYDLATAELT-MIPTTTVPVPEDKVEQLNRLIEKLEDEDDVSEVFT 235
>gi|339448762|ref|ZP_08652318.1| hypothetical protein LfruK3_03188 [Lactobacillus fructivorans KCTC
3543]
Length = 244
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/239 (36%), Positives = 131/239 (54%), Gaps = 16/239 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ + + A K GG +P N L +EKA+E ++PKD V+R
Sbjct: 10 IQGRKNAQDAKRGKIFQKISRNLYQAAKAGGSDPEGNPQLRLEMEKAREANMPKDNVQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
I +AS G F E YE YG GG +++V LTD R+ AA+R GG + GSV
Sbjct: 70 IDKASGVGGAKFEEVTYEGYGPGGTAVMVSALTDNKNRTAAAIRSAFTHHGGSLGTDGSV 129
Query: 203 MFKFRRARVVNIKF--TDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R + I TD D+D +L ALDAGA+D+ TD++ Y++++
Sbjct: 130 SYMFDRKGFITISKSDTDDDEDSMLMAALDAGADDMKS-------TDDE-----YQILTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ + L++AG ++ D +L+P T EV + +E LI +L + DDV VY
Sbjct: 178 PASMASVRDALQKAG--YKLDAEVKLVPQNTTEVPSDKVEQYSGLIDELEDNDDVQDVY 234
>gi|227486688|ref|ZP_03917004.1| protein of hypothetical function DUF28 [Anaerococcus lactolyticus
ATCC 51172]
gi|227235276|gb|EEI85291.1| protein of hypothetical function DUF28 [Anaerococcus lactolyticus
ATCC 51172]
Length = 243
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/243 (35%), Positives = 130/243 (53%), Gaps = 14/243 (5%)
Query: 78 RRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKD 137
+ SKI +KG++DAKK K++++ + + A ++GG +P N L +E AK ++P D
Sbjct: 5 NKWSKIKNKKGSEDAKKGKIFTKHARNITVAAREGGLDPEYNASLKTAIEMAKADNMPND 64
Query: 138 IVERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKM 196
++R IK+AS E G + F +YE YG GGV+ +V+ LTD R+ VR + GG +
Sbjct: 65 NIDRAIKKASGEAGGDNFERIIYEGYGPGGVAFIVDCLTDNKNRTAPDVRHIFDKFGGNL 124
Query: 197 ADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
GSVMF F + + + D D+ + AL+AGA DV +D E Y++
Sbjct: 125 GTDGSVMFLFEKKGEIVVNGEGKDFDEFMMDALEAGASDV-----------DDIEEGYFQ 173
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
V++ +++ D KLRE G E N S L IEVD E +LI L + DD+
Sbjct: 174 VLTEVNDFNDTVEKLREMGYKIEKANVSYLA--NDIEVDPSHHEKLFKLIDALEDNDDIQ 231
Query: 317 AVY 319
VY
Sbjct: 232 EVY 234
>gi|333398661|ref|ZP_08480474.1| hypothetical protein LgelK3_08890 [Leuconostoc gelidum KCTC 3527]
gi|406600217|ref|YP_006745563.1| hypothetical protein C269_06200 [Leuconostoc gelidum JB7]
gi|406371752|gb|AFS40677.1| hypothetical protein C269_06200 [Leuconostoc gelidum JB7]
Length = 240
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 134/241 (55%), Gaps = 16/241 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ ++ A K GG + N L V+EKAK ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKLAHDLYVAAKAGGADTDMNASLRLVVEKAKSANMPKDNIQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ +AS G + F E YE YG GV+++VE TD I R+V+++R K GG + GSV
Sbjct: 70 LDKASGAGGQKFEEVTYEGYGTAGVAVLVETSTDNINRTVSSIRNSFKHFGGALGTSGSV 129
Query: 203 MFKFRRARVVNIK---FTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
F+F R + I F + D+D +L+ AL+AGAEDV + +++ +
Sbjct: 130 AFQFDRKGYLAIDREMFPELDEDTVLESALEAGAEDV------------QTQDAVFEIYT 177
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+++ I L EAG F+ + ++ + + DE E ++LI +L E +DV AVY
Sbjct: 178 APNDFQTIEGTLGEAGYVFDEAEVT-MIAQNPMIISDEDREKLEQLIDELEENEDVLAVY 236
Query: 320 T 320
T
Sbjct: 237 T 237
>gi|348026291|ref|YP_004766096.1| hypothetical protein MELS_1047 [Megasphaera elsdenii DSM 20460]
gi|341822345|emb|CCC73269.1| UPF0082 protein HMPREF0889_0963 [Megasphaera elsdenii DSM 20460]
Length = 244
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 136/245 (55%), Gaps = 24/245 (9%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +KG DA + K+ +++G+E+ AV+ GGP+P N L L+KAKE ++PKD
Sbjct: 8 ANIKRKKGKNDAIRGKITTKIGREITIAVRMGGPDPVGNMRLKLALQKAKENNIPKD--- 64
Query: 141 RNIKRASEKGQEA-----FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
NIKRA +KG A + E VYE YG GV++ V VLTD R+ AAVR GG
Sbjct: 65 -NIKRAIQKGAGATEGQNYEEIVYEGYGPAGVAVTVNVLTDNRNRAAAAVRHEFSKSGGN 123
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ G V + F + + AD+DQ++++ALDAGA+DV +DED Y
Sbjct: 124 LGATGCVSWMFHNTGIFVVNRDQADEDQIMEVALDAGADDV-------KVSDED-----Y 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDD 314
++++T + + + L + I ET++ S ++P TI++ E E + + L ELDD
Sbjct: 172 EIITTPEAFDAVEKALADNNI--ETEHASITMVPENTIKLTGEDAEKMERFVDALDELDD 229
Query: 315 VDAVY 319
V VY
Sbjct: 230 VQDVY 234
>gi|335041174|ref|ZP_08534290.1| UPF0082 protein yeeN [Caldalkalibacillus thermarum TA2.A1]
gi|334178972|gb|EGL81621.1| UPF0082 protein yeeN [Caldalkalibacillus thermarum TA2.A1]
Length = 241
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 90/242 (37%), Positives = 136/242 (56%), Gaps = 16/242 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RK QDAK+AK+++++ KE+ +AVK GG +P N L L KAK+ ++P D ++R
Sbjct: 10 IQHRKERQDAKRAKIFTKISKEIYAAVKNGGSDPDQNPRLRMALHKAKQANMPNDNIQRT 69
Query: 143 IKRASEKGQE-AFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+A+ + + E VYE YG GV+I+V+VLTD RS A VR + GG + + G
Sbjct: 70 IKKATGDVEGLTYEEIVYEGYGPHGVAIMVDVLTDNRNRSAAEVRHLFNKHGGNLGESGC 129
Query: 202 VMFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
V + F R VV+ + +D L+ +A++AGAED+ EDD Y+VV+
Sbjct: 130 VAYLFERKGLIVVDKEAAPLGEDDLMLMAIEAGAEDL----RVEDDA--------YEVVT 177
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+Y + L IP + +LP TT++++DE E +LI L + DDV VY
Sbjct: 178 APGDYETVKQALETKQIPL-AETQITMLPTTTVQLNDEQKEQVMKLIDALEDSDDVQNVY 236
Query: 320 TD 321
T+
Sbjct: 237 TN 238
>gi|259501480|ref|ZP_05744382.1| glucose-1-phosphate adenylyltransferase [Lactobacillus iners DSM
13335]
gi|302191551|ref|ZP_07267805.1| hypothetical protein LineA_06049 [Lactobacillus iners AB-1]
gi|309803904|ref|ZP_07697988.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners LactinV 11V1-d]
gi|309806210|ref|ZP_07700226.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners LactinV 03V1-b]
gi|309808350|ref|ZP_07702253.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners LactinV 01V1-a]
gi|309809489|ref|ZP_07703347.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners SPIN 2503V10-D]
gi|312871681|ref|ZP_07731770.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners LEAF 3008A-a]
gi|312872829|ref|ZP_07732892.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners LEAF 2062A-h1]
gi|312873671|ref|ZP_07733717.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners LEAF 2052A-d]
gi|312875256|ref|ZP_07735265.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners LEAF 2053A-b]
gi|315653329|ref|ZP_07906251.1| glucose-1-phosphate adenylyltransferase [Lactobacillus iners ATCC
55195]
gi|325911877|ref|ZP_08174281.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners UPII 143-D]
gi|325913061|ref|ZP_08175432.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners UPII 60-B]
gi|329920006|ref|ZP_08276884.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners SPIN 1401G]
gi|349612389|ref|ZP_08891610.1| hypothetical protein HMPREF1027_01037 [Lactobacillus sp. 7_1_47FAA]
gi|259167111|gb|EEW51606.1| glucose-1-phosphate adenylyltransferase [Lactobacillus iners DSM
13335]
gi|308163999|gb|EFO66262.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners LactinV 11V1-d]
gi|308167429|gb|EFO69592.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners LactinV 03V1-b]
gi|308168413|gb|EFO70528.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners LactinV 01V1-a]
gi|308170161|gb|EFO72196.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners SPIN 2503V10-D]
gi|311089219|gb|EFQ47654.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners LEAF 2053A-b]
gi|311090771|gb|EFQ49169.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners LEAF 2052A-d]
gi|311091638|gb|EFQ50019.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners LEAF 2062A-h1]
gi|311092781|gb|EFQ51136.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners LEAF 3008A-a]
gi|315489254|gb|EFU78894.1| glucose-1-phosphate adenylyltransferase [Lactobacillus iners ATCC
55195]
gi|325476383|gb|EGC79545.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners UPII 143-D]
gi|325477617|gb|EGC80758.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners UPII 60-B]
gi|328936777|gb|EGG33217.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners SPIN 1401G]
gi|348608985|gb|EGY58952.1| hypothetical protein HMPREF1027_01037 [Lactobacillus sp. 7_1_47FAA]
Length = 243
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/240 (35%), Positives = 128/240 (53%), Gaps = 15/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAKK K++ ++ +E+ A K GGP+P+ N L V++KA+ ++PK +ER
Sbjct: 10 IQGRKNAQDAKKGKIFQKLSRELFMAAKSGGPDPSGNPSLRLVMDKARAANMPKSNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A E + E YE Y GGV+++VE LTD R+ +AVR GG M GSV
Sbjct: 70 IKKAEGNSDEHYDEITYEGYAPGGVAVLVEALTDNKNRTASAVRVAFTRNGGTMGATGSV 129
Query: 203 MFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R V++ TDAD+DQ+L +DAG +D+ ++ +++ +
Sbjct: 130 AYMFDRKGYIVIDRSTTDADEDQVLMDVMDAGGDDL------------QASDDAFEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+T + L +AG D ++P T V E E + LI L + DDV VYT
Sbjct: 178 PKAFTGVRDALEKAGYKL-ADAELTMVPQNTTAVPAEKKEQFERLIDALEDDDDVSNVYT 236
>gi|410583596|ref|ZP_11320701.1| DNA-binding regulatory protein, YebC/PmpR family [Thermaerobacter
subterraneus DSM 13965]
gi|410504458|gb|EKP93968.1| DNA-binding regulatory protein, YebC/PmpR family [Thermaerobacter
subterraneus DSM 13965]
Length = 248
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 135/238 (56%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
RK QDAKK K++S++ +E+I+AV++GG +P +N L LE+A++ +P + +ER IKR
Sbjct: 13 RKARQDAKKGKIFSKLAREIITAVRQGGGDPEANPRLRLALERARQFSMPAENIERAIKR 72
Query: 146 A-SEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMF 204
E E + E VYE YG GGV++++E+LTD RS +R + GG + + G V +
Sbjct: 73 GLGESEAENYEELVYEGYGPGGVALMLEILTDNRNRSAGEIRHIFAKHGGNLGESGCVAW 132
Query: 205 KFRRARVVNIKFTDAD-KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
F R V+ + A +D LL +A++AGAED+ ED + + + + D+
Sbjct: 133 MFDRKGVITVSAQGAPAEDDLLLLAVEAGAEDL----KAEDGS--------FVIYTDPDD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ L +AG+P E D G ++P T ++V+ + E L+ L + DDV +Y +
Sbjct: 181 LHRVREALEKAGVPVE-DAGLRMVPKTEVKVEGKEAEQLLRLLDALEDHDDVQEIYGN 237
>gi|289450184|ref|YP_003475615.1| YebC/PmpR family DNA-binding regulatory protein [Clostridiales
genomosp. BVAB3 str. UPII9-5]
gi|289184731|gb|ADC91156.1| DNA-binding regulatory protein, YebC/PmpR family [Clostridiales
genomosp. BVAB3 str. UPII9-5]
Length = 241
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/246 (37%), Positives = 140/246 (56%), Gaps = 20/246 (8%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +KGA DA+K L++++G+E+ AVK GGP+P SN+ L ++ KAK ++P D
Sbjct: 6 KWNNIKRKKGAADAQKGALFTKIGREIQVAVKSGGPDPNSNSKLKDIIAKAKMNNMPNDN 65
Query: 139 VERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
++R+I +A+ G + E++ YE YG GV+++VE LTD R+ A VR + GG M
Sbjct: 66 IQRSINKAAGIGSDTNYEEISYEGYGPAGVAVIVEALTDNRNRTAADVRHLFDKFGGNMG 125
Query: 198 DPGSVMFKF-RRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
G V F F ++ ++ + D++ +L+ AL+AGA D V EDD Y
Sbjct: 126 TTGCVSFMFNKKGEIIISREEYPDEEAVLEKALEAGAADF----VPEDDV--------YV 173
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPI--TTIEVDD-EAMELNKELIAKLLELD 313
V + ++Y + L+ AGI FE N L P+ T + VDD E E ++LI L E D
Sbjct: 174 VYTAPEDYDAVMADLQAAGIEFEDAN---LGPVADTKVTVDDPEVAEQLEKLIEGLEEHD 230
Query: 314 DVDAVY 319
DV AVY
Sbjct: 231 DVMAVY 236
>gi|149375109|ref|ZP_01892881.1| hypothetical protein MDG893_05809 [Marinobacter algicola DG893]
gi|149360473|gb|EDM48925.1| hypothetical protein MDG893_05809 [Marinobacter algicola DG893]
Length = 249
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 141/242 (58%), Gaps = 18/242 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAK+ K+++++ +E+ A ++GG NP N L V++KA ++ KD +E
Sbjct: 8 ANIKHRKAAQDAKRGKIFTKIIRELTVAARQGGGNPDDNPRLRGVIDKALTANMKKDTIE 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R ++R + G ++ E++ YE YG GGV+I VEV+TD R+VA +R + GG +
Sbjct: 68 RAVERGAGDGDDSNYEELTYEGYGPGGVAIFVEVMTDNRNRTVADIRHALNKMGGNLGTD 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F + +++ + D+D+L++ AL AGAED+ ++ +++V+
Sbjct: 128 GSVAYLFSKQGIISYS-PEMDEDRLMEAALVAGAEDLAT-----------LSDGSFEIVT 175
Query: 260 TSDNYTDITTKLREAG-IPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
D + D+ L E+G IP DN ++P TT+E+ +E E +LI L +LDDV
Sbjct: 176 VPDQFLDVKQSLVESGLIP---DNAEVTMVPSTTVELGEEGAEPILKLIDMLEDLDDVQN 232
Query: 318 VY 319
VY
Sbjct: 233 VY 234
>gi|386400260|ref|ZP_10085038.1| DNA-binding regulatory protein, YebC/PmpR family [Bradyrhizobium
sp. WSM1253]
gi|385740886|gb|EIG61082.1| DNA-binding regulatory protein, YebC/PmpR family [Bradyrhizobium
sp. WSM1253]
Length = 248
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 130/241 (53%), Gaps = 17/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA+K+KL+ ++ +E+ A K G P+P N L A + A++ ++PKD +ER
Sbjct: 10 IMHRKGRQDAQKSKLFGKLAREITVAAKLGTPDPNMNPRLRAAITAARQENMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+K+A E + E YE YG GGV+++VE LTD R+ + +R GG + + GSV
Sbjct: 70 VKKALGNDGENYDEIRYEGYGPGGVAVIVEALTDNRNRAASDIRSFFTKSGGNLGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R +V + A D +LD A++AGA+DVI +E +++ ++++
Sbjct: 130 SFMFDRTGIVEYDRSVASDDAVLDAAIEAGADDVIS------------SEGGHEIYASTE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
Y D+ L F + L+ P T+ VDDE E +LI L E DDV VY
Sbjct: 178 GYRDVAKALE---AKFGEPRKAALIWKPQNTVAVDDETGEKLLKLIDLLNEHDDVQHVYA 234
Query: 321 D 321
+
Sbjct: 235 N 235
>gi|422730128|ref|ZP_16786522.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0012]
gi|315149401|gb|EFT93417.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0012]
Length = 242
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 132/243 (54%), Gaps = 16/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
S I GRK AQDAK+ K++ ++ +E+ A K GGP+PT N L ++KAK ++P D +
Sbjct: 8 SNIQGRKNAQDAKRGKIFQKVSREIYMAAKAGGPDPTMNPALRLAVDKAKSANMPNDNIA 67
Query: 141 RNIKRASEKGQ-EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+AS G+ E + E YE YG GGV+++V LTD R+ VR GG + +
Sbjct: 68 RAIKKASSAGEGEHYDEVTYEGYGPGGVAVLVHALTDNRNRTATNVRVAFTRNGGSLGET 127
Query: 200 GSVMFKFRRARVVNIKFTDA--DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV + F R + IK D ++D +L++ L+AG ED+ P +++
Sbjct: 128 GSVNYMFDRKGYIVIKREDHAIEEDDMLEVVLEAGGEDLETSP------------EVFEI 175
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ +++T + L +AG + ++P T + ++DE + L+ KL + DDV
Sbjct: 176 YTAPEDFTAVRDALEQAGYSLAQAELT-MVPQTLLTLNDEQKAQLERLVDKLEDDDDVSE 234
Query: 318 VYT 320
V+T
Sbjct: 235 VFT 237
>gi|39996176|ref|NP_952127.1| hypothetical protein GSU1074 [Geobacter sulfurreducens PCA]
gi|409911617|ref|YP_006890082.1| hypothetical protein KN400_1052 [Geobacter sulfurreducens KN400]
gi|49036508|sp|P62036.1|Y1074_GEOSL RecName: Full=Probable transcriptional regulatory protein GSU1074
gi|39982941|gb|AAR34400.1| protein of unknown function DUF28 [Geobacter sulfurreducens PCA]
gi|298505190|gb|ADI83913.1| protein of unknown function DUF28 [Geobacter sulfurreducens KN400]
Length = 247
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 140/244 (57%), Gaps = 15/244 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ S I +KGA DAK+ K+++++ KE+ A K GG +P N L A ++KAK ++PKD
Sbjct: 6 KWSTIRHKKGAADAKRGKVFTKLIKEITVAAKIGGGDPNGNPRLRAAVDKAKAENMPKDN 65
Query: 139 VERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ER IK+ + E ++ E +YE YG GGV+++VE +TD R+V VR C G M
Sbjct: 66 IERAIKKGTGELEGVSYEEIIYEGYGPGGVAVLVECMTDNRNRTVGEVRSTFTKCNGNMG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
+ G V + F + ++ + D D ++L + AL+AGA+DV DE E Y+V
Sbjct: 126 EAGCVSWMFDKKGLIVLS-KDVDFEKLFETALEAGADDV---------ADE---EEQYEV 172
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
++ + D+ L +AG PFE+ + ++P T +++D + E +L+ +L + DDV
Sbjct: 173 LTDPAAFIDVREALEKAGFPFESAEIT-MIPQTMVKLDGKNAENMLKLMDRLEDNDDVQN 231
Query: 318 VYTD 321
VY +
Sbjct: 232 VYAN 235
>gi|119476896|ref|ZP_01617177.1| hypothetical protein GP2143_10097 [marine gamma proteobacterium
HTCC2143]
gi|119449703|gb|EAW30940.1| hypothetical protein GP2143_10097 [marine gamma proteobacterium
HTCC2143]
Length = 248
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 137/244 (56%), Gaps = 19/244 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAK+ K+++++ +E++ A K GGP+P N L AV++KA ++ +D ++
Sbjct: 8 ANIKHRKAAQDAKRGKVFTKIIREIVVAAKAGGPSPEDNPTLRAVIDKALGSNMRRDTID 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
+ I R + G E E YE YG GG++++VE LTD R+VA +R GG +
Sbjct: 68 KAIARGAGTGDEDNYEAASYEGYGVGGIAVLVECLTDNRNRTVAEIRHAFSKRGGNLGTD 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F R I F D+DQ++DIAL+AGAEDV+ +N+D + V +
Sbjct: 128 GSVAYLF--TRTGQISFEKGDEDQVMDIALEAGAEDVV---MNDDGS--------IDVST 174
Query: 260 TSDNYTDITTKLREAGIPFETDNGSE--LLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+++ + + G+ T + +E +LP +E+D + E LI L +LDDV
Sbjct: 175 AFEDFLSVKEAMVAGGL---TPDHAEVTMLPSVLVELDKDGAEKAMGLIDMLEDLDDVQN 231
Query: 318 VYTD 321
VYT+
Sbjct: 232 VYTN 235
>gi|395242628|ref|ZP_10419624.1| UPF0082 protein HMPREF0492_1075 [Lactobacillus pasteurii CRBIP
24.76]
gi|394479876|emb|CCI85864.1| UPF0082 protein HMPREF0492_1075 [Lactobacillus pasteurii CRBIP
24.76]
Length = 242
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 128/240 (53%), Gaps = 15/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K GGP+P+ N L V++KA+ ++PKD +ER
Sbjct: 10 IQGRKNAQDAKRGKIFQKLSREIYMAAKSGGPDPSGNPALRLVIDKARSNNMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A +E + E YE Y GGV++ VE LTD R+ +AVR GG M GSV
Sbjct: 70 IKKAEGNSEEHYDEITYEGYAPGGVAVFVEALTDNKNRTASAVRVAFTRNGGTMGATGSV 129
Query: 203 MFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R V++ TDAD+DQ+L +DAG +D+ ++ Y++ +
Sbjct: 130 AYMFDRKGYIVIDRSTTDADEDQVLLDVMDAGGDDL------------QTSDEAYEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ + L + G + ++P T V ++ E + L+ L + DDV VYT
Sbjct: 178 PKQFAQVRDALIKTGYKLAAAELT-MIPQNTTPVPEDKKEQFQHLVDALEDDDDVQNVYT 236
>gi|160943942|ref|ZP_02091172.1| hypothetical protein FAEPRAM212_01443 [Faecalibacterium prausnitzii
M21/2]
gi|158444618|gb|EDP21622.1| DNA-binding regulatory protein, YebC/PmpR family [Faecalibacterium
prausnitzii M21/2]
gi|295104775|emb|CBL02319.1| conserved hypothetical protein TIGR01033 [Faecalibacterium
prausnitzii SL3/3]
Length = 245
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/240 (35%), Positives = 133/240 (55%), Gaps = 14/240 (5%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +K D +AK+++++G+E+ AV+ GGPNP SN+ LA ++ KAK + VP D ++
Sbjct: 8 NNIKRKKEKTDGARAKVFTKIGREISVAVRDGGPNPASNSKLADLIAKAKRMSVPNDNIQ 67
Query: 141 RNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
R IK+A + F YE YG GGV+++VE LTD R+ A +R GG + G
Sbjct: 68 RIIKKAEGGDKTEFEAITYEGYGPGGVAVMVETLTDNRNRTAADLRHYFDKNGGNLGAMG 127
Query: 201 SVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
V F F + V++I D D D+ + ALDAGAED D ED AE V +
Sbjct: 128 CVAFLFNQKGVIDISLEDKDADEAMMDALDAGAEDF--------DASEDAAE----VTTD 175
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDD-EAMELNKELIAKLLELDDVDAVY 319
+NY+ + L E G +D+ + ++P+TT + D + ++ +L+ L + DDV V+
Sbjct: 176 PENYSAVVKALEEKGYEILSDDLA-MVPMTTTRLTDPDQLKQMGKLLDSLEDNDDVQNVW 234
>gi|406026871|ref|YP_006725703.1| hypothetical protein LBUCD034_1080 [Lactobacillus buchneri CD034]
gi|405125360|gb|AFS00121.1| hypothetical protein LBUCD034_1080 [Lactobacillus buchneri CD034]
Length = 243
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 131/239 (54%), Gaps = 15/239 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +++ A KKG P+P +N L V+EKA+ ++PKD V+R
Sbjct: 10 IQGRKNAQDAKRGKIFQKISRDLYQAAKKGDPDPENNPQLRLVMEKARAANMPKDNVQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
I +AS G F E YE YG GG +I+V LTD R+ AA+R GG + GSV
Sbjct: 70 IDKASGIGGAKFEEITYEGYGPGGTAIMVSALTDNKNRTAAAIRSAFTHHGGTLGTSGSV 129
Query: 203 MFKF-RRARVVNIK-FTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R+ +V ++ D D+D +L ALDAGA+D+ T +D +++ +
Sbjct: 130 SYMFDRKGYIVILRDGLDTDEDTMLMDALDAGADDM--------KTSDDE----FEIFTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ D+ L+E G +T L P T EV ++ + LI +L E DDV VY
Sbjct: 178 PKSMDDVRDALQEKGYDLDTAE-VRLFPENTTEVPEDKISQYTGLIDELAENDDVQDVY 235
>gi|241895679|ref|ZP_04782975.1| protein of hypothetical function DUF28 [Weissella paramesenteroides
ATCC 33313]
gi|241871046|gb|EER74797.1| protein of hypothetical function DUF28 [Weissella paramesenteroides
ATCC 33313]
Length = 240
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 137/241 (56%), Gaps = 16/241 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +++ +A K GG +P SN+ L V++KAK ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKLARDLYTAAKAGGVDPDSNSSLRLVIDKAKAANMPKDNIQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ +AS + E YE YG G++++VE LTD R+ ++VR K GG++ GSV
Sbjct: 70 LDKASGANGANYQELTYEGYGPAGIAVLVEALTDNTNRTASSVRSSFKHFGGELGTSGSV 129
Query: 203 MFKFRRARVVNIKF---TDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
F+F R + I+ T+ D+DQL + LDAGAED+ T +D+ +++ +
Sbjct: 130 SFQFDRKGYLEIERDEDTEIDEDQLFEDMLDAGAEDM--------KTFDDQ----FEIYT 177
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
++ ++ L G F D + ++ + V ++ E L+A+L E DDV AV+
Sbjct: 178 DPKSFPEVRDALAAKGYQFSIDEVT-MVAQNPMAVPEDKQESLDNLVAELEENDDVQAVF 236
Query: 320 T 320
T
Sbjct: 237 T 237
>gi|256825360|ref|YP_003149320.1| hypothetical protein Ksed_15350 [Kytococcus sedentarius DSM 20547]
gi|256688753|gb|ACV06555.1| conserved hypothetical protein TIGR01033 [Kytococcus sedentarius
DSM 20547]
Length = 251
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 130/236 (55%), Gaps = 15/236 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++++ K + A + GG +PT N L ++KAK+ VP D +ER +KR
Sbjct: 13 KKAAIDAKRGKLFAKLVKNIEVAARTGGADPTGNPTLFDAIQKAKKNSVPNDNIERAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S E G + YE Y GGV +++E L+D R+V VR + GG+MAD GSV
Sbjct: 73 GSGAEAGGAEYQALTYEGYAPGGVGLIIECLSDNKNRAVMEVRTALTRNGGQMADSGSVT 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
F F R V+ + + +D+L++I L+AGAE++ D E + SD
Sbjct: 133 FNFHRKGVIAVSGGEKSEDELMEIVLEAGAEEMT-----------DLGEGFEITTEPSD- 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
D+ T L++A + +++ + ++LPIT IE+D + LI L + DDV VY
Sbjct: 181 MVDVRTALQQADVDYDSAD-VKMLPITPIELDADGARKLFRLIDALEDCDDVQEVY 235
>gi|300813070|ref|ZP_07093448.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
delbrueckii subsp. bulgaricus PB2003/044-T3-4]
gi|300495911|gb|EFK31055.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
delbrueckii subsp. bulgaricus PB2003/044-T3-4]
Length = 243
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 133/242 (54%), Gaps = 19/242 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K GGP+P+ N L V++KA+ ++PKD V+R
Sbjct: 10 IQGRKNAQDAKRGKVFQKLSREIYMAAKSGGPDPSGNPSLRLVMDKARAANMPKDNVQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A E + E YE Y GGV+I+VE LTD R+ ++VR GG + GSV
Sbjct: 70 IKKAEGNSDEHYDEVTYEGYAPGGVAILVEALTDNKNRTASSVRVAFTRNGGSLGATGSV 129
Query: 203 MFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R V++ TDAD+DQ+L ++AG +D+ DD Y++ +
Sbjct: 130 AYMFDRKGYIVIDRSTTDADEDQMLMDVMEAGGDDL----QTSDDA--------YEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+ ++T + L +AG SEL +P T V + E ++L+ L + DDV V
Sbjct: 178 AKSFTAVRDALEKAGYQLAV---SELTMVPQNTTPVPADKKEQFEKLVDALEDDDDVSNV 234
Query: 319 YT 320
YT
Sbjct: 235 YT 236
>gi|227431945|ref|ZP_03913965.1| protein of hypothetical function DUF28 [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
gi|381336930|ref|YP_005174705.1| hypothetical protein MI1_06475 [Leuconostoc mesenteroides subsp.
mesenteroides J18]
gi|227352230|gb|EEJ42436.1| protein of hypothetical function DUF28 [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
gi|356644896|gb|AET30739.1| hypothetical protein MI1_06475 [Leuconostoc mesenteroides subsp.
mesenteroides J18]
Length = 240
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 135/241 (56%), Gaps = 16/241 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ ++ A K GG +P N L V+EKAK ++PK+ ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKIAHDLYVAAKAGGADPDMNASLRLVVEKAKAANMPKENIQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ +AS F E YE YG GV+++VE TD I R+V++VR K GG + GSV
Sbjct: 70 LDKASGANGAKFEEVTYEGYGTAGVAVLVEASTDNINRTVSSVRNSFKHAGGALGTSGSV 129
Query: 203 MFKFRRARVVNI---KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
F+F R + I F D D+D +L+ AL+AGAEDV T +D +++ +
Sbjct: 130 AFQFDRRGYLAIDRSAFPDLDEDTVLEAALEAGAEDV--------QTSDD----VFEIYT 177
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
++ + + L EAG FE D ++ +++ +E E +L+ +L + +DV AVY
Sbjct: 178 EPADFQAVESALTEAGYVFE-DAEVTMIAQNPMDISEEDREKLDKLVDELEDNEDVLAVY 236
Query: 320 T 320
T
Sbjct: 237 T 237
>gi|374572896|ref|ZP_09645992.1| DNA-binding regulatory protein, YebC/PmpR family [Bradyrhizobium
sp. WSM471]
gi|374421217|gb|EHR00750.1| DNA-binding regulatory protein, YebC/PmpR family [Bradyrhizobium
sp. WSM471]
Length = 248
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 129/241 (53%), Gaps = 17/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA+K+KL+ ++ +E+ A K G P+P N L A + A++ ++PKD +ER
Sbjct: 10 IMHRKGRQDAQKSKLFGKLAREITVAAKLGTPDPNMNPRLRAAITAARQENMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+K+A E + E YE YG GGV+++VE LTD R+ + +R GG + + GSV
Sbjct: 70 VKKALGNDGENYDEIRYEGYGPGGVAVIVEALTDNRNRAASDIRSFFTKSGGNLGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R +V + A D +LD A++AGA+DVI +E +++ ++++
Sbjct: 130 SFMFDRTGIVEYDRSVASDDAVLDAAIEAGADDVIS------------SEGGHEIYASTE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
Y D+ L F + L+ P T+ VDDE E L+ L E DDV VY
Sbjct: 178 GYRDVAKALE---AKFGEPRKAALIWKPQNTVAVDDETAEKLLRLMDLLNEHDDVQHVYA 234
Query: 321 D 321
+
Sbjct: 235 N 235
>gi|422845360|ref|ZP_16892070.1| glucose-1-phosphate adenylyltransferase [Lactobacillus delbrueckii
subsp. lactis DSM 20072]
gi|325684532|gb|EGD26696.1| glucose-1-phosphate adenylyltransferase [Lactobacillus delbrueckii
subsp. lactis DSM 20072]
Length = 243
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 86/242 (35%), Positives = 133/242 (54%), Gaps = 19/242 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K GGP+P+ N L V++KA+ ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKVFQKLSREIYMAAKSGGPDPSGNPSLRLVMDKARAANMPKDNIQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A E + E YE Y GGV+I+VE LTD R+ ++VR GG + GSV
Sbjct: 70 IKKAEGNSDEHYDEVTYEGYAPGGVAILVEALTDNKNRTASSVRVAFTRNGGSLGATGSV 129
Query: 203 MFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R V++ TDAD+DQ+L ++AG +D+ DD Y++ +
Sbjct: 130 AYMFDRKGYIVIDRSTTDADEDQMLMDVMEAGGDDL----QTSDDA--------YEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+ ++T + L +AG SEL +P T V + E ++L+ L + DDV V
Sbjct: 178 AKSFTAVRDALEKAGYQLAV---SELTMVPQNTTPVPADKKEQFEKLVEALEDDDDVSNV 234
Query: 319 YT 320
YT
Sbjct: 235 YT 236
>gi|420151971|ref|ZP_14659047.1| DNA-binding regulatory protein, YebC/PmpR family [Actinomyces
massiliensis F0489]
gi|394765670|gb|EJF47036.1| DNA-binding regulatory protein, YebC/PmpR family [Actinomyces
massiliensis F0489]
Length = 252
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 128/238 (53%), Gaps = 16/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++R+ K + A + GG +P N L ++KAK+ VP D + R +KR
Sbjct: 13 KKAAIDAKRGKLFARLIKNIEVAARTGGADPAGNPTLFDAIQKAKKNSVPADNITRAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S E G + +YE YG GV+ +VE LTD R+ + VR GG +ADPGSV
Sbjct: 73 GSGEEAGGADWQTIMYEGYGPAGVAFLVECLTDNRNRAASDVRVAFTRTGGSLADPGSVA 132
Query: 204 FKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
+ F R VV I D D+D +L LDAGAE+V+E P ++V+S S
Sbjct: 133 YNFSRKGVVEIAKADGIDEDTILMAVLDAGAEEVLEGP------------ESFEVISDSS 180
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ + + EAG+ +++ S+ L T +EVD + LI L +LDDV V+T
Sbjct: 181 DLIAVRNAVTEAGMEYDSAE-SQFLAGTKVEVDLDGARKVMRLIDALEDLDDVQNVFT 237
>gi|295100668|emb|CBK98213.1| conserved hypothetical protein TIGR01033 [Faecalibacterium
prausnitzii L2-6]
Length = 245
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 84/240 (35%), Positives = 134/240 (55%), Gaps = 14/240 (5%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +K D KAK+++++G+E+ AV+ GGPNP SN+ LA ++ KAK + VP D ++
Sbjct: 8 NNIKRKKEKTDGAKAKVFTKIGREISVAVRTGGPNPASNSKLADLIAKAKRMSVPNDNIQ 67
Query: 141 RNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
R IK+A + + YE YG GGV+++VE LTD R+ A +R GG + G
Sbjct: 68 RIIKKAEGGDKTEYEAITYEGYGPGGVAVMVETLTDNRNRTAADLRHYFDKNGGNLGAMG 127
Query: 201 SVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
V F F + V++I D D D+ + ALDAGAED D ED AE + +
Sbjct: 128 CVGFLFSQKGVIDISLEDKDADEAMMDALDAGAEDF--------DAGEDAAE----ITTD 175
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDD-EAMELNKELIAKLLELDDVDAVY 319
+NY+ + + E G +D+ + ++P+TT + D + ++L +L+ L + DDV V+
Sbjct: 176 PENYSAVVKAMEEKGYEILSDDLA-MVPMTTTRLTDPDQLKLMGKLLDALEDNDDVQNVW 234
>gi|433462670|ref|ZP_20420246.1| hypothetical protein D479_13777 [Halobacillus sp. BAB-2008]
gi|432188539|gb|ELK45723.1| hypothetical protein D479_13777 [Halobacillus sp. BAB-2008]
Length = 250
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 86/242 (35%), Positives = 142/242 (58%), Gaps = 16/242 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
S I RKGAQDAK+ KL+ ++ +E+ A K+GG +P +N L ++KA+ ++PKD V+
Sbjct: 8 SNIKHRKGAQDAKRGKLFMKLAREIFMAAKQGGGDPETNPPLRLAMDKARANNMPKDNVD 67
Query: 141 RNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+A+ + + E YE YG GGV+++V+VLTD R+ A VR G + +
Sbjct: 68 RAIKKATGDLDGVHYEEYTYEGYGPGGVAVMVKVLTDNKNRTAADVRHAFNKNDGNLGEN 127
Query: 200 GSVMFKFRRA--RVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G V F F+R+ V++ TDAD++ ++ A++AGAE++ +T EDR E Y
Sbjct: 128 GCVSFMFQRSGYLVIDRSLTDADEEDMMLEAIEAGAEEM--------ETYEDRFEIY--- 176
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ ++++ + L+++G F T N ++P T ++D+ +E +LI L + DDV
Sbjct: 177 -TAPESFSTVKDALKDSGYQFLT-NEVTMIPETYTDLDESGVEKMLKLIDMLEDNDDVQE 234
Query: 318 VY 319
VY
Sbjct: 235 VY 236
>gi|313673194|ref|YP_004051305.1| hypothetical protein Calni_1234 [Calditerrivibrio nitroreducens DSM
19672]
gi|312939950|gb|ADR19142.1| protein of unknown function DUF28 [Calditerrivibrio nitroreducens
DSM 19672]
Length = 242
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 135/245 (55%), Gaps = 15/245 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKG-GPNPTSNTVLAAVLEKAKELDVPKD 137
+ + I RK AQDAKK K+++++ KE+ A K G +P N L L+KAK ++PKD
Sbjct: 6 KWANIKHRKAAQDAKKGKIFTKIAKELTVAAKLGQSGDPEFNPRLRLALDKAKAANMPKD 65
Query: 138 IVERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKM 196
VER IK+ +G + E V YE YG GGV+I+++ LTD R+VA VR + GG M
Sbjct: 66 NVERAIKKGLGEGDGSNYEDVIYEGYGPGGVAILIQALTDNKNRTVAEVRSTLTKRGGSM 125
Query: 197 ADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
+ G V + F + V+NI D+D L+ IA+D+GAEDV+ N+D Y+
Sbjct: 126 GEAGCVSWMFDKKGVINIPKDAVDEDTLMMIAIDSGAEDVV---TNDDG---------YE 173
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
V++ NY + + + I E + + P TIE+ E E L+ L +LDDV
Sbjct: 174 VITDPANYETVKKAIESSNIKIEYAEIT-MRPKNTIELSGEEAEKTMALLEALEDLDDVQ 232
Query: 317 AVYTD 321
VY++
Sbjct: 233 EVYSN 237
>gi|313123374|ref|YP_004033633.1| glucose-1-phosphate adenylyltransferase [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
gi|312279937|gb|ADQ60656.1| Glucose-1-phosphate adenylyltransferase [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
Length = 243
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 86/242 (35%), Positives = 133/242 (54%), Gaps = 19/242 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K GGP+P+ N L V++KA+ ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKVFQKLSREIYMAAKSGGPDPSGNPSLRLVMDKARAANMPKDNIQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A E + E YE Y GGV+I+VE LTD R+ ++VR GG + GSV
Sbjct: 70 IKKAEGNSDEHYDEVTYEGYAPGGVAILVEALTDNKNRTASSVRVAFTRNGGSLGATGSV 129
Query: 203 MFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R V++ TDAD+DQ+L ++AG +D+ DD Y++ +
Sbjct: 130 AYMFDRKGYIVIDRSTTDADEDQMLMDVMEAGGDDL----QTSDDA--------YEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+ ++T + L +AG SEL +P T V + E ++L+ L + DDV V
Sbjct: 178 AKSFTAVRDALEKAGYQLAV---SELTMVPQNTTPVPADKKEQFEKLVDALEDDDDVSNV 234
Query: 319 YT 320
YT
Sbjct: 235 YT 236
>gi|366090041|ref|ZP_09456407.1| hypothetical protein LaciK1_07704 [Lactobacillus acidipiscis KCTC
13900]
Length = 239
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 86/240 (35%), Positives = 129/240 (53%), Gaps = 16/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K GGP+P SN L +++KA+ ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKISRELYMAAKSGGPDPDSNPQLRLMMDKARSANMPKDNIKRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
I +AS + E YE YG GV+ +V LTD R+ +AVR GG + + GSV
Sbjct: 70 IDKASGANGADYEEITYEGYGPAGVAFLVHTLTDNRNRTASAVRADFSHNGGSLGESGSV 129
Query: 203 MFKFRRARVVNI--KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
F F R + I + DAD+DQ+ + +DAGA+D+ TD+D E Y +
Sbjct: 130 SFMFDRKGYIAIVREGLDADEDQMFEDVIDAGADDL--------QTDDDVFEIYTDPKAF 181
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ + K A ++P TT+EV D+ +E + LI L + DDV VYT
Sbjct: 182 PEVRDALQKKYELASAEL------TMVPKTTVEVPDDKLEKVQRLIDHLEDEDDVSEVYT 235
>gi|331701307|ref|YP_004398266.1| hypothetical protein Lbuc_0944 [Lactobacillus buchneri NRRL
B-30929]
gi|329128650|gb|AEB73203.1| UPF0082 protein yeeN [Lactobacillus buchneri NRRL B-30929]
Length = 243
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 131/239 (54%), Gaps = 15/239 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +++ A KKG P+P +N L V+EKA+ ++PKD V+R
Sbjct: 10 IQGRKNAQDAKRGKIFQKISRDLYQAAKKGDPDPENNPQLRLVMEKARAANMPKDNVQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
I +AS G F E YE YG GG +I+V LTD R+ AA+R GG + GSV
Sbjct: 70 IDKASGIGGAKFEEITYEGYGPGGTAIMVSALTDNKNRTAAAIRSAFTHHGGTLGTSGSV 129
Query: 203 MFKF-RRARVVNIK-FTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R+ +V ++ D D+D +L ALDAGA+D+ T +D +++ +
Sbjct: 130 SYMFDRKGYIVILRDGLDTDEDTMLMDALDAGADDM--------KTSDDE----FEIFTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ D+ L+E G +T L P T EV ++ + LI +L E DDV VY
Sbjct: 178 PKSMDDVRDALQEKGYDLDTAE-VRLFPENTTEVPEDKISQYTGLIDELEENDDVQDVY 235
>gi|187932598|ref|YP_001885207.1| hypothetical protein CLL_A1008 [Clostridium botulinum B str. Eklund
17B]
gi|188589174|ref|YP_001920338.1| hypothetical protein CLH_0943 [Clostridium botulinum E3 str. Alaska
E43]
gi|251779166|ref|ZP_04822086.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
E Beluga']
gi|226696039|sp|B2V2S0.1|Y943_CLOBA RecName: Full=Probable transcriptional regulatory protein CLH_0943
gi|226734047|sp|B2TML4.1|Y1008_CLOBB RecName: Full=Probable transcriptional regulatory protein CLL_A1008
gi|187720751|gb|ACD21972.1| conserved hypothetical protein [Clostridium botulinum B str. Eklund
17B]
gi|188499455|gb|ACD52591.1| conserved hypothetical protein [Clostridium botulinum E3 str.
Alaska E43]
gi|243083481|gb|EES49371.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
E Beluga']
Length = 246
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 84/239 (35%), Positives = 134/239 (56%), Gaps = 15/239 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I +KG DAK+ K+++++GKE++ AVK GGP+P +N L ++ KAK ++P D + R+
Sbjct: 10 IQAKKGKTDAKRGKIFTKIGKELMVAVKNGGPSPETNNRLRDIIAKAKAANMPNDTITRS 69
Query: 143 IKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+AS E G + +YE YG GV+++VE LTD RS VR GG M G
Sbjct: 70 IKKASGELGSVNYENIIYEGYGPSGVAVIVETLTDNKNRSAGNVRSAFTKGGGNMGTQGC 129
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
V F F+ + I+ D D+D+++ +ALDAGAED + DED + V +T
Sbjct: 130 VGFMFQEKGEMVIEKADKDEDEMMMLALDAGAEDF--------NADEDEV---FVVTTTP 178
Query: 262 DNYTDITTKLREAGIPF-ETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+++ + L GI F E D +++P T +D+ + ++++ L + +DV VY
Sbjct: 179 EDFGTVREALEAEGIEFLEAD--VKMIPDTYTAIDEADAKKFQKMLDLLEDDEDVQEVY 235
>gi|376295813|ref|YP_005167043.1| hypothetical protein DND132_1026 [Desulfovibrio desulfuricans
ND132]
gi|323458374|gb|EGB14239.1| protein of unknown function DUF28 [Desulfovibrio desulfuricans
ND132]
Length = 248
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 133/237 (56%), Gaps = 17/237 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKG QDAKKAK +++ K++I A K GG NP N+ L ++KAK +++PKD +E
Sbjct: 8 ANIQHRKGRQDAKKAKFFTKAAKDIILAAKAGGGNPDDNSTLRLAIQKAKAVNLPKDRIE 67
Query: 141 RNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
IK+ + E E +YE YG GGV+++VEV TD R+VA +R GG MAD
Sbjct: 68 NAIKKGTGELAGGDLAEIMYEGYGPGGVAMLVEVATDNKNRTVAEIRHAFSKHGGNMADS 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F R V+ +DQL+++ L+AGAED+I+ +DD+ + V +
Sbjct: 128 GSVSYMFSRKGVIVFTKDKYTEDQLMEVGLEAGAEDIID----DDDS--------FTVHT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
++ + +AG+ FE+ ++ +P + VD + + K+++ LDD D
Sbjct: 176 APTDFMAVQQAFTDAGMEFESAEFNQ-VPENLVPVD---VSVGKKVMNLFDALDDND 228
>gi|397631373|gb|EJK70127.1| hypothetical protein THAOC_08541 [Thalassiosira oceanica]
Length = 308
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 96/254 (37%), Positives = 143/254 (56%), Gaps = 22/254 (8%)
Query: 72 APVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGG-PNPTSNTVLAAVLEKAK 130
+P+ MGR ++ A KG DAKKAK+ + GK++I AVK+GG P+P +N LA +++ AK
Sbjct: 64 SPLLMGRAAAVRAATKGKTDAKKAKVNAYYGKKIIMAVKQGGSPDPVANRQLAELIKAAK 123
Query: 131 ELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVK 190
VP D + R IKRA+EK F E +E YG+GG S+++ VL+D RS A V+ V
Sbjct: 124 NNSVPVDNINRAIKRATEKDAGDFSESKFEAYGFGGASLIINVLSDNPNRSTADVKSAVN 183
Query: 191 DCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDR 250
GK+A+ GSV+F + V I + D+++LL A+DAG +D + D DE+
Sbjct: 184 KNNGKLAESGSVLFMYDLKGKVEIP-CEVDEEELLMAAIDAGVDD-----MELVDGDEE- 236
Query: 251 AERYYKVVSTSDNYTDI--TTKLREAGIPFETDNGSEL----LPITTIEVDDEAMELNKE 304
TS YTD T+ L +A + GS++ + +E +E E N +
Sbjct: 237 --------GTSIVYTDPKETSLLFDAVKSMGLEEGSKMSLSHVSKAPVECSEEDFEKNMK 288
Query: 305 LIAKLLELDDVDAV 318
+I L +LDDVD+V
Sbjct: 289 IIDALEDLDDVDSV 302
>gi|408411472|ref|ZP_11182630.1| UPF0082 protein HMPREF0526_11261 [Lactobacillus sp. 66c]
gi|409350671|ref|ZP_11233719.1| UPF0082 protein HMPREF0526_11261 [Lactobacillus equicursoris CIP
110162]
gi|407874387|emb|CCK84436.1| UPF0082 protein HMPREF0526_11261 [Lactobacillus sp. 66c]
gi|407877291|emb|CCK85777.1| UPF0082 protein HMPREF0526_11261 [Lactobacillus equicursoris CIP
110162]
Length = 244
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 133/242 (54%), Gaps = 19/242 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K GGP+P+ N L V++KA+ ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKVFQKLSREIYMAAKSGGPDPSGNPSLRLVMDKARAANMPKDNIQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A E + E YE Y GGV+++VE LTD R+ ++VR GG + GSV
Sbjct: 70 IKKAEGNSDEHYDEVTYEGYAPGGVAVLVEALTDNKNRTASSVRVAFTRNGGSLGATGSV 129
Query: 203 MFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R V++ TDAD+DQ+L ++AG +D+ DD Y++ +
Sbjct: 130 SYMFDRKGYIVIDRSTTDADEDQMLMDVMEAGGDDL----QTSDDA--------YEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+ ++T + L +AG SEL +P T V + E ++L+ L + DDV V
Sbjct: 178 AKSFTSVRDALEKAGYKLAV---SELTMVPQNTTPVPADKKEQFEKLVDALEDDDDVSNV 234
Query: 319 YT 320
YT
Sbjct: 235 YT 236
>gi|29375262|ref|NP_814415.1| hypothetical protein EF0663 [Enterococcus faecalis V583]
gi|227554777|ref|ZP_03984824.1| protein of hypothetical function DUF28 [Enterococcus faecalis HH22]
gi|256964553|ref|ZP_05568724.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
gi|257077537|ref|ZP_05571898.1| conserved hypothetical protein [Enterococcus faecalis JH1]
gi|294780447|ref|ZP_06745812.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis PC1.1]
gi|422713602|ref|ZP_16770351.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0309A]
gi|422716344|ref|ZP_16773051.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0309B]
gi|422736378|ref|ZP_16792642.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX1341]
gi|33516992|sp|Q838A9.1|Y663_ENTFA RecName: Full=Probable transcriptional regulatory protein EF_0663
gi|29342721|gb|AAO80486.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
V583]
gi|227176076|gb|EEI57048.1| protein of hypothetical function DUF28 [Enterococcus faecalis HH22]
gi|256955049|gb|EEU71681.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
gi|256985567|gb|EEU72869.1| conserved hypothetical protein [Enterococcus faecalis JH1]
gi|294452446|gb|EFG20883.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis PC1.1]
gi|315166881|gb|EFU10898.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX1341]
gi|315575399|gb|EFU87590.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0309B]
gi|315581457|gb|EFU93648.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0309A]
Length = 242
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 131/243 (53%), Gaps = 16/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
S I GRK AQDAK+ K++ ++ +E+ A K GGP+P N L ++KAK ++P D +
Sbjct: 8 SNIQGRKNAQDAKRGKIFQKVSREIYMAAKAGGPDPAMNPALRLAVDKAKSANMPNDNIA 67
Query: 141 RNIKRASEKGQ-EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+AS G+ E + E YE YG GGV+++V LTD R+ VR GG + +
Sbjct: 68 RAIKKASSAGEGEHYDEVTYEGYGPGGVAVLVHALTDNRNRTATNVRVAFTRNGGSLGET 127
Query: 200 GSVMFKFRRARVVNIKFTDA--DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV + F R + IK D ++D +L++ L+AG ED+ P +++
Sbjct: 128 GSVNYMFDRKGYIVIKREDHAIEEDDMLEVVLEAGGEDIETSP------------EVFEI 175
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ +++T + L +AG + ++P T + ++DE + L+ KL + DDV
Sbjct: 176 YTAPEDFTAVRDALEQAGYSLAQAELT-MVPQTLLTLNDEQKAQLERLVDKLEDDDDVSE 234
Query: 318 VYT 320
V+T
Sbjct: 235 VFT 237
>gi|341821081|emb|CCC57416.1| UPF0082 protein HMPREF0877_0949 [Weissella thailandensis fsh4-2]
Length = 240
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 138/241 (57%), Gaps = 16/241 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +++ +A K GG +P +N+ L V++KAK ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKLARDLYTAAKAGGADPETNSGLRLVVDKAKAANMPKDNIQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ +AS + E YE YG G++I+VE LTD R+ ++VR K GG++ GSV
Sbjct: 70 LDKASGANGANYQELTYEGYGPAGIAILVEALTDNTNRTASSVRSSFKHFGGELGTSGSV 129
Query: 203 MFKFRRARVVNIKF---TDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
F+F R + I+ T+ D+DQLL+ LDAGA+D+ T +D+ +++ +
Sbjct: 130 SFQFDRKGYIEIERDEDTEIDEDQLLEDMLDAGADDM--------KTFDDQ----FEIYT 177
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ ++ L E G F D + ++ + V ++ E L+A+L + +DV AV+
Sbjct: 178 DPKAFPEVRAALAEKGYEFSMDEVT-MIAQNPMAVPEDKQESLANLVAELEDNEDVQAVF 236
Query: 320 T 320
T
Sbjct: 237 T 237
>gi|325274572|ref|ZP_08140630.1| hypothetical protein G1E_15175 [Pseudomonas sp. TJI-51]
gi|324100299|gb|EGB98087.1| hypothetical protein G1E_15175 [Pseudomonas sp. TJI-51]
Length = 248
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 137/242 (56%), Gaps = 14/242 (5%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK QDAK+ K++++ +E+ A K+GGP+P SN L L+KA ++ +DI++
Sbjct: 8 ANIKHRKERQDAKRGKVFTKWIRELTVAAKQGGPDPASNPRLRLALDKALGANMSRDIID 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R + R + + +E++ YE YG GGV+I+VE +TD R+ AAVR CGG +
Sbjct: 68 RAVARGAGTNESDNVEELSYEGYGPGGVAIMVEAMTDNRNRTAAAVRHAFTKCGGNLGTD 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F R ++ D+D L++ A++A A+DV+ NED + ++V +
Sbjct: 128 GSVAYLFERKGQLSFA-PGVDEDALMEAAMEADADDVV---ANEDGS--------FEVFT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ +++ + T L EAG D + P T+ E+D E E +LI L +LDDV VY
Sbjct: 176 SFNSFYAVRTALEEAGFK-AADAEIVMQPTTSAELDHEGAEKVLKLIDMLEDLDDVQNVY 234
Query: 320 TD 321
++
Sbjct: 235 SN 236
>gi|170016918|ref|YP_001727837.1| hypothetical protein LCK_00560 [Leuconostoc citreum KM20]
gi|414597070|ref|ZP_11446641.1| UPF0082 protein HMPREF0542_10160 [Leuconostoc citreum LBAE E16]
gi|421876542|ref|ZP_16308098.1| UPF0082 protein HMPREF0542_10160 [Leuconostoc citreum LBAE C10]
gi|421878230|ref|ZP_16309712.1| UPF0082 protein HMPREF0542_10160 [Leuconostoc citreum LBAE C11]
gi|169803775|gb|ACA82393.1| DUF28 domain-containing protein [Leuconostoc citreum KM20]
gi|372557619|emb|CCF24218.1| UPF0082 protein HMPREF0542_10160 [Leuconostoc citreum LBAE C10]
gi|390447844|emb|CCF25832.1| UPF0082 protein HMPREF0542_10160 [Leuconostoc citreum LBAE C11]
gi|390482184|emb|CCF28702.1| UPF0082 protein HMPREF0542_10160 [Leuconostoc citreum LBAE E16]
Length = 240
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 132/241 (54%), Gaps = 16/241 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ ++ A K GG +P N L V+EKAK ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKLAHDLYVAAKAGGADPEMNASLRLVVEKAKSANMPKDNIQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ +AS G + F E YE YG GV+I+VE TD I R+V+++R K GG + GSV
Sbjct: 70 LDKASGAGGQKFEEVTYEGYGTAGVAILVETSTDNINRTVSSIRNSFKHFGGALGTTGSV 129
Query: 203 MFKFRRARVVNIK---FTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
F+F R + I F D D+D +L+ AL+AGAEDV + +++ +
Sbjct: 130 AFQFDRKGYLAINRTDFPDLDEDTVLEAALEAGAEDV------------QTQDEVFEIYT 177
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
T ++ + L G FE + ++ E+ D+ + +L+ +L E +DV AVY
Sbjct: 178 TPADFQTVEAALTADGYVFEEAEVT-MIAQNPAEISDDDRDKLDKLVDELEENEDVLAVY 236
Query: 320 T 320
T
Sbjct: 237 T 237
>gi|307272475|ref|ZP_07553728.1| hypothetical protein TIGR01033 [Enterococcus faecalis TX0855]
gi|306510760|gb|EFM79777.1| hypothetical protein TIGR01033 [Enterococcus faecalis TX0855]
Length = 250
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 131/243 (53%), Gaps = 16/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
S I GRK AQDAK+ K++ ++ +E+ A K GGP+P N L ++KAK ++P D +
Sbjct: 16 SNIQGRKNAQDAKRGKIFRKVSREIYMAAKAGGPDPAMNPALRLAVDKAKSANMPNDNIA 75
Query: 141 RNIKRASEKGQ-EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+AS G+ E + E YE YG GGV+++V LTD R+ VR GG + +
Sbjct: 76 RAIKKASSAGEGEHYDEVTYEGYGPGGVAVLVHALTDNRNRTATNVRVAFTRNGGSLGET 135
Query: 200 GSVMFKFRRARVVNIKFTDA--DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV + F R + IK D ++D +L++ L+AG ED+ P +++
Sbjct: 136 GSVNYMFDRKGYIVIKREDHAIEEDDMLEVVLEAGGEDIETSP------------EVFEI 183
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ +++T + L +AG + ++P T + ++DE + L+ KL + DDV
Sbjct: 184 YTAPEDFTAVRDALEQAGYSLAQAELT-MVPQTLLTLNDEQKAQLERLVDKLEDDDDVSE 242
Query: 318 VYT 320
V+T
Sbjct: 243 VFT 245
>gi|332981535|ref|YP_004462976.1| hypothetical protein Mahau_0956 [Mahella australiensis 50-1 BON]
gi|332699213|gb|AEE96154.1| protein of unknown function DUF28 [Mahella australiensis 50-1 BON]
Length = 250
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 136/242 (56%), Gaps = 16/242 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +K A DA++ K+++++G+E+ AV+ GG NP +N+ L + KAK ++P D +E
Sbjct: 8 ANIKRKKEATDAQRGKIFTKIGRELAIAVRHGGDNPEANSTLRDAIAKAKANNMPNDTIE 67
Query: 141 RNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+A+ + E VYE YG GGV+I+VE +D R+ + +R + GG + +
Sbjct: 68 RIIKKAAGALDSVNYEELVYEGYGPGGVAIIVEATSDNRNRTSSDIRHLFDKSGGSLGET 127
Query: 200 GSVMFKFRR--ARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G VM+ F R VV+ D D+D +L IAL+AGAED+I +DD Y++
Sbjct: 128 GCVMWMFDRKGVLVVDRDAVDIDEDDMLMIALEAGAEDLI----TQDDA--------YEI 175
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ +++ + L + GIPF + EL+P T+ D EA LI KL + DDV
Sbjct: 176 RTAPEDFASVRDTLEKQGIPFISAQ-LELIPKVTVSPDVEAARKVLNLIDKLDDHDDVQN 234
Query: 318 VY 319
VY
Sbjct: 235 VY 236
>gi|383765166|ref|YP_005444147.1| hypothetical protein PSMK_00910 [Phycisphaera mikurensis NBRC
102666]
gi|381385434|dbj|BAM02250.1| hypothetical protein PSMK_00910 [Phycisphaera mikurensis NBRC
102666]
Length = 238
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 137/245 (55%), Gaps = 14/245 (5%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RK QDAK++K++S+ + +I A K GG +P N L +++AK ++PKD
Sbjct: 6 KWANIKHRKARQDAKRSKIWSKCSRAIIVAAKHGGGDPDQNLTLRYAVDEAKAANMPKDT 65
Query: 139 VERNIKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ + I++ A + + E VYE YG GV++ VE LTD R+V +R++ + CGG +A
Sbjct: 66 IAKAIEKGAGGSDGDDYEEVVYEGYGPAGVAVYVETLTDNRNRTVPELRKMFEKCGGNLA 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV F F R + + AD+++++D+ L+AGAEDV ED A+ +++
Sbjct: 126 SAGSVAFTFERKGELFVDGAKADEEKIMDVVLEAGAEDV------ED------ADGAWRI 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ +++ + L AG+ + G +LP+ +E+D E E + + +L + DDV
Sbjct: 174 TTAVEDFHRVRAALEAAGLTPDQ-AGLPMLPLNVVELDGEQAEKTERFLDELDDHDDVQK 232
Query: 318 VYTDQ 322
VY +
Sbjct: 233 VYANN 237
>gi|227517625|ref|ZP_03947674.1| protein of hypothetical function DUF28 [Enterococcus faecalis
TX0104]
gi|229546489|ref|ZP_04435214.1| protein of hypothetical function DUF28 [Enterococcus faecalis
TX1322]
gi|229548603|ref|ZP_04437328.1| protein of hypothetical function DUF28 [Enterococcus faecalis ATCC
29200]
gi|256617545|ref|ZP_05474391.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
gi|256761434|ref|ZP_05502014.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|256854478|ref|ZP_05559842.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256959795|ref|ZP_05563966.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
gi|257080904|ref|ZP_05575265.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
gi|257083593|ref|ZP_05577954.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
gi|257086018|ref|ZP_05580379.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|257089091|ref|ZP_05583452.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|257415233|ref|ZP_05592227.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
gi|257418279|ref|ZP_05595273.1| conserved hypothetical protein [Enterococcus faecalis T11]
gi|257420921|ref|ZP_05597911.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|293384983|ref|ZP_06630817.1| glucose-1-phosphate adenylyl transferase [Enterococcus faecalis
R712]
gi|293389253|ref|ZP_06633715.1| glucose-1-phosphate adenylyl transferase [Enterococcus faecalis
S613]
gi|307277053|ref|ZP_07558158.1| hypothetical protein TIGR01033 [Enterococcus faecalis TX2134]
gi|307289644|ref|ZP_07569588.1| hypothetical protein TIGR01033 [Enterococcus faecalis TX0109]
gi|312900251|ref|ZP_07759563.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0470]
gi|312904320|ref|ZP_07763482.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0635]
gi|312905972|ref|ZP_07764985.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
DAPTO 512]
gi|312909318|ref|ZP_07768174.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
DAPTO 516]
gi|312953038|ref|ZP_07771891.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0102]
gi|384512358|ref|YP_005707451.1| glucose-1-phosphate adenylyltransferase [Enterococcus faecalis
OG1RF]
gi|384517711|ref|YP_005705016.1| hypothetical protein EF62_1032 [Enterococcus faecalis 62]
gi|421513636|ref|ZP_15960394.1| hypothetical protein YebC [Enterococcus faecalis ATCC 29212]
gi|422684700|ref|ZP_16742930.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX4000]
gi|422688229|ref|ZP_16746388.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0630]
gi|422691325|ref|ZP_16749362.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0031]
gi|422695662|ref|ZP_16753641.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX4244]
gi|422697480|ref|ZP_16755419.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX1346]
gi|422702276|ref|ZP_16760112.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX1302]
gi|422705807|ref|ZP_16763600.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0043]
gi|422721390|ref|ZP_16777982.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0017]
gi|422724355|ref|ZP_16780834.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX2137]
gi|422725309|ref|ZP_16781773.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0312]
gi|422731299|ref|ZP_16787670.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0645]
gi|424671353|ref|ZP_18108356.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis 599]
gi|424677084|ref|ZP_18113944.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV103]
gi|424681173|ref|ZP_18117964.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV116]
gi|424682674|ref|ZP_18119439.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV129]
gi|424687939|ref|ZP_18124556.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV25]
gi|424689910|ref|ZP_18126447.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV31]
gi|424694874|ref|ZP_18131262.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV37]
gi|424697187|ref|ZP_18133522.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV41]
gi|424702202|ref|ZP_18138364.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV62]
gi|424702579|ref|ZP_18138727.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV63]
gi|424706587|ref|ZP_18142589.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV65]
gi|424716765|ref|ZP_18146067.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV68]
gi|424720938|ref|ZP_18150037.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV72]
gi|424725635|ref|ZP_18154325.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV73]
gi|424726827|ref|ZP_18155477.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV81]
gi|424742385|ref|ZP_18170708.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV85]
gi|424752401|ref|ZP_18180400.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV93]
gi|424760312|ref|ZP_18187940.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis R508]
gi|430359757|ref|ZP_19425984.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis OG1X]
gi|430369672|ref|ZP_19428687.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis M7]
gi|227074931|gb|EEI12894.1| protein of hypothetical function DUF28 [Enterococcus faecalis
TX0104]
gi|229306234|gb|EEN72230.1| protein of hypothetical function DUF28 [Enterococcus faecalis ATCC
29200]
gi|229308389|gb|EEN74376.1| protein of hypothetical function DUF28 [Enterococcus faecalis
TX1322]
gi|256597072|gb|EEU16248.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
gi|256682685|gb|EEU22380.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|256710038|gb|EEU25082.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256950291|gb|EEU66923.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
gi|256988934|gb|EEU76236.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
gi|256991623|gb|EEU78925.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
gi|256994048|gb|EEU81350.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|256997903|gb|EEU84423.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|257157061|gb|EEU87021.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
gi|257160107|gb|EEU90067.1| conserved hypothetical protein [Enterococcus faecalis T11]
gi|257162745|gb|EEU92705.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|291077661|gb|EFE15025.1| glucose-1-phosphate adenylyl transferase [Enterococcus faecalis
R712]
gi|291081417|gb|EFE18380.1| glucose-1-phosphate adenylyl transferase [Enterococcus faecalis
S613]
gi|306499458|gb|EFM68831.1| hypothetical protein TIGR01033 [Enterococcus faecalis TX0109]
gi|306506224|gb|EFM75389.1| hypothetical protein TIGR01033 [Enterococcus faecalis TX2134]
gi|310627967|gb|EFQ11250.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
DAPTO 512]
gi|310629067|gb|EFQ12350.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0102]
gi|310632416|gb|EFQ15699.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0635]
gi|311290342|gb|EFQ68898.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
DAPTO 516]
gi|311292612|gb|EFQ71168.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0470]
gi|315025655|gb|EFT37587.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX2137]
gi|315030527|gb|EFT42459.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX4000]
gi|315031354|gb|EFT43286.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0017]
gi|315146891|gb|EFT90907.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX4244]
gi|315153893|gb|EFT97909.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0031]
gi|315156691|gb|EFU00708.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0043]
gi|315159721|gb|EFU03738.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0312]
gi|315162694|gb|EFU06711.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0645]
gi|315166177|gb|EFU10194.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX1302]
gi|315173939|gb|EFU17956.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX1346]
gi|315578761|gb|EFU90952.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0630]
gi|323479844|gb|ADX79283.1| conserved hypothetical protein [Enterococcus faecalis 62]
gi|327534247|gb|AEA93081.1| glucose-1-phosphate adenylyl transferase [Enterococcus faecalis
OG1RF]
gi|401673235|gb|EJS79635.1| hypothetical protein YebC [Enterococcus faecalis ATCC 29212]
gi|402351767|gb|EJU86639.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV116]
gi|402355582|gb|EJU90353.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV103]
gi|402358831|gb|EJU93490.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis 599]
gi|402362137|gb|EJU96674.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV25]
gi|402365413|gb|EJU99833.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV31]
gi|402366631|gb|EJV00996.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV129]
gi|402369631|gb|EJV03904.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV37]
gi|402369877|gb|EJV04132.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV62]
gi|402376547|gb|EJV10484.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV41]
gi|402386799|gb|EJV20294.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV68]
gi|402386961|gb|EJV20455.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV63]
gi|402387407|gb|EJV20884.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV65]
gi|402391004|gb|EJV24323.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV73]
gi|402392590|gb|EJV25839.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV72]
gi|402398338|gb|EJV31288.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV81]
gi|402400503|gb|EJV33326.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV85]
gi|402403837|gb|EJV36490.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis R508]
gi|402404591|gb|EJV37208.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV93]
gi|429513221|gb|ELA02809.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis OG1X]
gi|429515769|gb|ELA05276.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis M7]
Length = 242
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 131/243 (53%), Gaps = 16/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
S I GRK AQDAK+ K++ ++ +E+ A K GGP+P N L ++KAK ++P D +
Sbjct: 8 SNIQGRKNAQDAKRGKIFQKVSREIYMAAKAGGPDPAMNPALRLAVDKAKSANMPNDNIA 67
Query: 141 RNIKRASEKGQ-EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+AS G+ E + E YE YG GGV+++V LTD R+ VR GG + +
Sbjct: 68 RAIKKASSAGEGEHYDEVTYEGYGPGGVAVLVHALTDNRNRTATNVRVAFTRNGGSLGET 127
Query: 200 GSVMFKFRRARVVNIKFTDA--DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV + F R + IK D ++D +L++ L+AG ED+ P +++
Sbjct: 128 GSVNYMFDRKGYIVIKREDHAIEEDDMLEVVLEAGGEDLETSP------------EVFEI 175
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ +++T + L +AG + ++P T + ++DE + L+ KL + DDV
Sbjct: 176 YTAPEDFTAVRDALEQAGYSLAQAELT-MVPQTLLTLNDEQKAQLERLVDKLEDDDDVSE 234
Query: 318 VYT 320
V+T
Sbjct: 235 VFT 237
>gi|383769379|ref|YP_005448442.1| hypothetical protein S23_11120 [Bradyrhizobium sp. S23321]
gi|381357500|dbj|BAL74330.1| hypothetical protein S23_11120 [Bradyrhizobium sp. S23321]
Length = 248
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 83/241 (34%), Positives = 129/241 (53%), Gaps = 17/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA+K+KL+ ++ +E+ A K G P+P N L A + A++ ++PKD +ER
Sbjct: 10 IMHRKGRQDAQKSKLFGKLAREITVAAKLGTPDPNMNPRLRAAITAARQENMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A E + E YE YG GGV+++VE LTD R+ + +R GG + + GSV
Sbjct: 70 IKKALGNEGENYDEIRYEGYGPGGVAVIVEALTDNRNRAASDIRSFFTKSGGNLGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R ++ + A D +LD A++AGA+DV+ E +++ ++++
Sbjct: 130 SFMFDRTGIIEYDRSVASDDAVLDAAIEAGADDVVS------------GEGGHEIYASTE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
Y D+ L F + L+ P T+ VDDE E +L+ L E DDV VY
Sbjct: 178 GYRDVAKALE---AKFGEPRKAALIWKPQNTVAVDDETGEKLLKLMDLLNEHDDVQQVYA 234
Query: 321 D 321
+
Sbjct: 235 N 235
>gi|300862052|ref|ZP_07108132.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis TUSoD Ef11]
gi|422739636|ref|ZP_16794810.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX2141]
gi|428766190|ref|YP_007152301.1| DUF28 family protein [Enterococcus faecalis str. Symbioflor 1]
gi|300848577|gb|EFK76334.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis TUSoD Ef11]
gi|315144554|gb|EFT88570.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX2141]
gi|427184363|emb|CCO71587.1| DUF28 family protein [Enterococcus faecalis str. Symbioflor 1]
Length = 242
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 131/243 (53%), Gaps = 16/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
S I GRK AQDAK+ K++ ++ +E+ A K GGP+P N L ++KAK ++P D +
Sbjct: 8 SNIQGRKNAQDAKRGKIFQKVSREIYMAAKAGGPDPAMNPALRLAVDKAKSANMPNDNIA 67
Query: 141 RNIKRASEKGQ-EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+AS G+ E + E YE YG GGV+++V LTD R+ VR GG + +
Sbjct: 68 RAIKKASSAGEGEHYDEVTYEGYGPGGVAVLVHALTDNRNRTATNVRVAFTRNGGSLGET 127
Query: 200 GSVMFKFRRARVVNIKFTDA--DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV + F R + IK D ++D +L++ L+AG ED+ P +++
Sbjct: 128 GSVNYMFDRKGYIVIKREDHAIEEDDMLEVVLEAGGEDLETSP------------EVFEI 175
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ +++T + L +AG + ++P T + ++DE + L+ KL + DDV
Sbjct: 176 YTAPEDFTAVRDALEQAGYSLAQAELT-MVPQTLLTLNDEQKAQLESLVDKLEDDDDVSE 234
Query: 318 VYT 320
V+T
Sbjct: 235 VFT 237
>gi|90426278|ref|YP_534648.1| hypothetical protein RPC_4807 [Rhodopseudomonas palustris BisB18]
gi|119372137|sp|Q20X07.1|Y4807_RHOPB RecName: Full=Probable transcriptional regulatory protein RPC_4807
gi|90108292|gb|ABD90329.1| protein of unknown function DUF28 [Rhodopseudomonas palustris
BisB18]
Length = 248
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 132/246 (53%), Gaps = 27/246 (10%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA+K+KL+S++ +E+ A K G P+P N L + + A++ ++PKD +ER
Sbjct: 10 IMHRKGRQDAQKSKLFSKLAREITVAAKLGTPDPAMNARLRSAIIAARQENMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A E + E YE YG GGV+++VE LTD R+ + +R GG + + GSV
Sbjct: 70 IKKAIGSDGENYDEIRYEGYGPGGVAVIVEALTDNRNRAASDIRSYFTKSGGNLGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R ++ A D +LD A++AGA+DV+ ++ ++V ++ D
Sbjct: 130 AFMFDRTGIIEFDAKVASADDMLDAAIEAGADDVLS------------SDSGHEVYASQD 177
Query: 263 NYTDITTKL-------REAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
++ ++ L R+A + ++ P T+ VDDE E +LI L E DDV
Sbjct: 178 SFREVAKALEQKFGEARKAALTWK--------PQNTVPVDDETGEKLLKLIDLLQEHDDV 229
Query: 316 DAVYTD 321
VY +
Sbjct: 230 QNVYAN 235
>gi|307289932|ref|ZP_07569861.1| hypothetical protein TIGR01033 [Enterococcus faecalis TX0411]
gi|306498998|gb|EFM68487.1| hypothetical protein TIGR01033 [Enterococcus faecalis TX0411]
Length = 242
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 131/243 (53%), Gaps = 16/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
S I GRK AQDAK+ K++ ++ +E+ A K GGP+P N L ++KAK ++P D +
Sbjct: 8 SNIQGRKNAQDAKRGKIFQKVSREIYMAAKAGGPDPAMNPALRLAVDKAKSANMPNDNIA 67
Query: 141 RNIKRASEKGQ-EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+AS G+ E + E YE YG GGV+++V LTD R+ VR GG + +
Sbjct: 68 RAIKKASSAGEGEHYDEVTYEGYGPGGVAVLVHALTDNRNRTATNVRVAFTRNGGSLGET 127
Query: 200 GSVMFKFRRARVVNIKFTDA--DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV + F R + IK D ++D +L++ L+AG ED+ P +++
Sbjct: 128 GSVNYMFDRKGYIVIKREDHEIEEDDMLEVVLEAGGEDLETSP------------EVFEI 175
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ +++T + L +AG + ++P T + ++DE + L+ KL + DDV
Sbjct: 176 YTAPEDFTAVRDALEQAGYSLAQAELT-MVPQTLLTLNDEQKAQLERLVDKLEDDDDVSE 234
Query: 318 VYT 320
V+T
Sbjct: 235 VFT 237
>gi|255973735|ref|ZP_05424321.1| conserved hypothetical protein [Enterococcus faecalis T2]
gi|256957473|ref|ZP_05561644.1| conserved hypothetical protein [Enterococcus faecalis DS5]
gi|307278247|ref|ZP_07559326.1| hypothetical protein TIGR01033 [Enterococcus faecalis TX0860]
gi|397699055|ref|YP_006536843.1| hypothetical protein EFD32_0476 [Enterococcus faecalis D32]
gi|422700819|ref|ZP_16758662.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX1342]
gi|422711574|ref|ZP_16768503.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0027]
gi|422867918|ref|ZP_16914480.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis TX1467]
gi|255966607|gb|EET97229.1| conserved hypothetical protein [Enterococcus faecalis T2]
gi|256947969|gb|EEU64601.1| conserved hypothetical protein [Enterococcus faecalis DS5]
gi|306504998|gb|EFM74189.1| hypothetical protein TIGR01033 [Enterococcus faecalis TX0860]
gi|315034409|gb|EFT46341.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0027]
gi|315170771|gb|EFU14788.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX1342]
gi|329576934|gb|EGG58417.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis TX1467]
gi|397335694|gb|AFO43366.1| hypothetical protein EFD32_0476 [Enterococcus faecalis D32]
Length = 242
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 131/243 (53%), Gaps = 16/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
S I GRK AQDAK+ K++ ++ +E+ A K GGP+P N L ++KAK ++P D +
Sbjct: 8 SNIQGRKNAQDAKRGKIFQKVSREIYMAAKAGGPDPAMNPALRLAVDKAKSANMPNDNIA 67
Query: 141 RNIKRASEKGQ-EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+AS G+ E + E YE YG GGV+++V LTD R+ VR GG + +
Sbjct: 68 RAIKKASSAGEGEHYDEVTYEGYGPGGVAVLVHALTDNRNRTATNVRVAFTRNGGSLGET 127
Query: 200 GSVMFKFRRARVVNIKFTDA--DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV + F R + IK D ++D +L++ L+AG ED+ P +++
Sbjct: 128 GSVNYMFDRKGYIVIKREDHAIEEDDMLEVVLEAGGEDLETSP------------EVFEI 175
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ +++T + L +AG + ++P T + ++DE + L+ KL + DDV
Sbjct: 176 YTVPEDFTAVRDALEQAGYSLAQAELT-MVPQTLLTLNDEQKAQLERLVDKLEDDDDVSE 234
Query: 318 VYT 320
V+T
Sbjct: 235 VFT 237
>gi|313891358|ref|ZP_07824974.1| DNA-binding regulatory protein, YebC/PmpR family [Dialister
microaerophilus UPII 345-E]
gi|329121411|ref|ZP_08250036.1| glucose-1-phosphate adenylyltransferase [Dialister micraerophilus
DSM 19965]
gi|313120133|gb|EFR43309.1| DNA-binding regulatory protein, YebC/PmpR family [Dialister
microaerophilus UPII 345-E]
gi|327469701|gb|EGF15168.1| glucose-1-phosphate adenylyltransferase [Dialister micraerophilus
DSM 19965]
Length = 240
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 131/244 (53%), Gaps = 22/244 (9%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +KG DA +A++ +++ KE+ A + GG +P N L L KAK+ +VPK+
Sbjct: 8 ANIKHKKGKTDALRARITTKISKEITLAARMGGGDPVGNMRLKLALTKAKQNNVPKE--- 64
Query: 141 RNIKRASEKG-----QEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
NI+RA KG E F E YE YG GGV+I+VE TD R+ A VR GG
Sbjct: 65 -NIQRAIAKGIGATSGEGFEEMSYEGYGPGGVAIIVECSTDNKNRTAADVRYAFTHHGGS 123
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ PG V + F++ ++ + AD+D L+ +ALD+GAEDV E Y
Sbjct: 124 IGTPGCVGWMFKKKGIIIVDKEVADEDTLMLLALDSGAEDV------------QAHEEVY 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
++++ D + ++ L + GI E+ S ++P T+ +D E E +++I L E+DDV
Sbjct: 172 EIITEPDAFIAVSEALEKEGIEVESSEVS-MIPDNTVSLDGEKAESMQKMIEALEEIDDV 230
Query: 316 DAVY 319
VY
Sbjct: 231 QEVY 234
>gi|75676913|ref|YP_319334.1| hypothetical protein Nwi_2729 [Nitrobacter winogradskyi Nb-255]
gi|119391327|sp|Q3SP09.1|Y2729_NITWN RecName: Full=Probable transcriptional regulatory protein Nwi_2729
gi|74421783|gb|ABA05982.1| Protein of unknown function DUF28 [Nitrobacter winogradskyi Nb-255]
Length = 248
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/241 (36%), Positives = 129/241 (53%), Gaps = 17/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA+K+KL+S++ +E+ A K G P+P N L A + A+ ++PKD +ER
Sbjct: 10 IMHRKGRQDAQKSKLFSKLAREITVAAKLGTPDPAMNPRLRAAVIAARAENMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+AS E++ E YE YG GGV++++EVLTD R+ + +R GG + + GSV
Sbjct: 70 IKKASGNDAESYDELRYEGYGPGGVAVIMEVLTDNRNRAASDIRSYFTKSGGNLGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R V+ A D +L+ A++AGA+DV+ +DE E Y ++ D
Sbjct: 130 SFMFDRLGVIEYDADKASVDDMLEAAIEAGADDVV--------SDEGGHEIY----ASQD 177
Query: 263 NYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ D+ L F L+ P TI VDD E +LI L E DDV VY
Sbjct: 178 TFRDVAKALEST---FGEARKVALIWKPQNTIAVDDNTGEKLLKLIDLLNEHDDVQNVYA 234
Query: 321 D 321
+
Sbjct: 235 N 235
>gi|302389941|ref|YP_003825762.1| hypothetical protein Toce_1384 [Thermosediminibacter oceani DSM
16646]
gi|302200569|gb|ADL08139.1| protein of unknown function DUF28 [Thermosediminibacter oceani DSM
16646]
Length = 242
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 144/243 (59%), Gaps = 15/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +K DA+K KLY+++ K +I AV++GGP+P +N+ L ++EKA+E ++P + +
Sbjct: 8 ANIKHKKAKMDAQKGKLYTKLSKMIIVAVREGGPDPNANSKLRDIIEKAREANMPNENIM 67
Query: 141 RNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IKR S E G E +YE YG GG ++++EV+TD R+ +R + GG + +
Sbjct: 68 RAIKRGSGELGGANMEEVLYEGYGPGGAAVLLEVMTDNRNRTAGELRHIFDKYGGNLGEA 127
Query: 200 GSVMFKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
G V + F + ++ I+ +D D D ++ +A++AGA+DV E +DD+ E +
Sbjct: 128 GCVAWMFEKKGLIIIEKSDGIDVDGVMMLAIEAGADDVEE----QDDSIE--------IT 175
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
++++ + D+ L+E G+ + + LP TT+ + ++ E+ ++L+ L + DDV V
Sbjct: 176 TSTERFEDVRKFLQEKGVKLSSAEIT-YLPKTTLSLSEKDSEMMEKLLEALEDHDDVQNV 234
Query: 319 YTD 321
YT+
Sbjct: 235 YTN 237
>gi|317051311|ref|YP_004112427.1| hypothetical protein Selin_1136 [Desulfurispirillum indicum S5]
gi|316946395|gb|ADU65871.1| protein of unknown function DUF28 [Desulfurispirillum indicum S5]
Length = 249
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 133/243 (54%), Gaps = 16/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKGAQDAK+ K+++++ KE+ A + G +P N L L+KAK +++P D V+
Sbjct: 8 ANIRHRKGAQDAKRGKIFTKVAKEIAIAARNGA-DPDMNPALRLALQKAKGVNMPNDNVQ 66
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IKR E + YE Y GG++++VE LTD R+VA VR + GG + +
Sbjct: 67 RAIKRGIGGMDGDNYESITYEGYAPGGIAVMVESLTDNKNRTVAEVRHIFSKRGGSLGES 126
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
G V + F R V+ + A +D ++ +ALDAGAEDV + +++++
Sbjct: 127 GCVGYLFSRKGVITVNAESASEDDVMLVALDAGAEDV------------KSGDGMFEIIA 174
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELN-KELIAKLLELDDVDAV 318
++++ + + EAGIP ET ++P TTI V+DE + L+ L + DDV V
Sbjct: 175 AAEDFMAVRDAMEEAGIPIETAE-MNMVPATTITVEDEKIATQVLSLMEALEDCDDVQNV 233
Query: 319 YTD 321
Y +
Sbjct: 234 YMN 236
>gi|189424310|ref|YP_001951487.1| hypothetical protein Glov_1245 [Geobacter lovleyi SZ]
gi|226696294|sp|B3E787.1|Y1245_GEOLS RecName: Full=Probable transcriptional regulatory protein Glov_1245
gi|189420569|gb|ACD94967.1| protein of unknown function DUF28 [Geobacter lovleyi SZ]
Length = 247
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 140/245 (57%), Gaps = 17/245 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ S I +KGA DAK+ K+++++ KE+ A K GG +P +N L ++KAK ++PKD
Sbjct: 6 KWSTIKHKKGAADAKRGKIFTKIIKEISVAAKLGGGDPAANPRLRTAIDKAKGENMPKDN 65
Query: 139 VERNIKRASEKGQEAFI--EKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKM 196
+ER IK+ + G E + E VYE YG GGV+++VEV+TD R+V+ VR + C G M
Sbjct: 66 IERAIKKGT-GGMEGVVYEEIVYEGYGPGGVAVLVEVMTDNRNRTVSEVRSIFTKCNGNM 124
Query: 197 ADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
+ G V + F + V++ T D DQL + AL+AGAEDV+E ED+ E
Sbjct: 125 GEAGCVAWMFDKKGVISYD-TSLDFDQLFEAALEAGAEDVVE----EDEQIE-------- 171
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
V + ++ ++ L G F++ + ++P T + ++ + E +++ +L + DDV
Sbjct: 172 VYTEPSSFIEVRDALEAKGFKFQSAEIT-MIPQTQVALEGKQAESMLKMMDRLEDCDDVQ 230
Query: 317 AVYTD 321
VY +
Sbjct: 231 NVYAN 235
>gi|92118985|ref|YP_578714.1| hypothetical protein Nham_3525 [Nitrobacter hamburgensis X14]
gi|119391973|sp|Q1QHP3.1|Y3525_NITHX RecName: Full=Probable transcriptional regulatory protein Nham_3525
gi|91801879|gb|ABE64254.1| protein of unknown function DUF28 [Nitrobacter hamburgensis X14]
Length = 248
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 128/241 (53%), Gaps = 17/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA+K+KL+S++ +E+ A K G P+P N L A + A+ ++PKD +ER
Sbjct: 10 IMHRKGRQDAQKSKLFSKLAREITVAAKLGTPDPAMNARLRAAMIAARAENMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+AS E++ E YE YG GGV+I++EVLTD R+ + +R GG + + GSV
Sbjct: 70 IKKASGHDAESYDELRYEGYGPGGVAIIMEVLTDNRNRAASDIRSYFTKSGGNLGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R VV A D +L+ A++AGA+DV+ E +++ ++ +
Sbjct: 130 SFMFDRLGVVEYDADKASADDMLEAAVEAGADDVVS------------GEGGHEIYASQE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ D+ L F L+ P T+ VDD E +LI L E DDV VY
Sbjct: 178 TFRDVARALEG---KFGEARKVALIWKPQNTVAVDDNTGEKLLKLIDLLNEHDDVQNVYA 234
Query: 321 D 321
+
Sbjct: 235 N 235
>gi|332290902|ref|YP_004429511.1| hypothetical protein Krodi_0256 [Krokinobacter sp. 4H-3-7-5]
gi|332168988|gb|AEE18243.1| protein of unknown function DUF28 [Krokinobacter sp. 4H-3-7-5]
Length = 242
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/246 (36%), Positives = 138/246 (56%), Gaps = 15/246 (6%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR RK + + +K ++R+GK+++ AVK+GGP+P SN+ L AV++ AK +++P
Sbjct: 1 MGRAFEFRKARKMKRWSAMSKAFTRIGKDIVMAVKEGGPDPDSNSRLRAVIQNAKAVNMP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
KD VER IKRAS+K Q + E ++E Y G++I+VE TD TR+VA VR C G
Sbjct: 61 KDNVERAIKRASDKSQGDYKEVIFEGYAQHGIAILVETATDNNTRTVANVRAAFNKCDGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV+F F + D +++ +D GAE+V E DED Y
Sbjct: 121 LGTSGSVVFMFDHTCTFRVNAEGQDVEEIELEFIDFGAEEVFE--------DEDGIHIY- 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVD-DEAMELNKELIAKLLELDD 314
+ ++Y I + L E GI ++G + +P T ++ +E ++NK LI KL E DD
Sbjct: 172 ---APFESYGAIQSALEEKGIEI-LESGFDRIPQVTKQLTPEEEADVNK-LIDKLDEDDD 226
Query: 315 VDAVYT 320
V V++
Sbjct: 227 VQNVFS 232
>gi|390630020|ref|ZP_10258010.1| UPF0082 protein HMPREF0877_0949 [Weissella confusa LBAE C39-2]
gi|390484811|emb|CCF30358.1| UPF0082 protein HMPREF0877_0949 [Weissella confusa LBAE C39-2]
Length = 240
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 135/241 (56%), Gaps = 16/241 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +++ +A K GG +P SN L V++KAK ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKLARDLYTAAKAGGVDPDSNASLRLVIDKAKAANMPKDNIQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ +AS G + E YE YG GV+++V+ LTD I R+ A+VR K GG++ GSV
Sbjct: 70 LDKASGAGGANYQELTYEGYGPAGVAVLVQALTDNINRTAASVRSTFKHFGGELGTTGSV 129
Query: 203 MFKFRRARVVNIKFT---DADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
F+F R + I+ T D D+DQL + L+AGAED+ T +D+ +++ +
Sbjct: 130 SFQFDRKGYIEIERTEDNDIDEDQLFEDMLEAGAEDM--------KTYDDQ----FEIYT 177
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
++ ++ L G D + ++ + V ++ L+ +L E DDV AV+
Sbjct: 178 DPKSFPEVRDALEAKGYTLVNDEVT-MVAQNPMAVPEDKQASLASLVDELEENDDVQAVF 236
Query: 320 T 320
T
Sbjct: 237 T 237
>gi|291286411|ref|YP_003503227.1| hypothetical protein Dacet_0473 [Denitrovibrio acetiphilus DSM
12809]
gi|290883571|gb|ADD67271.1| protein of unknown function DUF28 [Denitrovibrio acetiphilus DSM
12809]
Length = 249
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 134/244 (54%), Gaps = 14/244 (5%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RK AQDAKK K ++++ KE+ A K GG +P N L L+KAK ++PKD
Sbjct: 6 KWANIKHRKAAQDAKKGKAFTKVAKELTVAAKIGGADPEMNPRLRVALDKAKSANLPKDN 65
Query: 139 VERNIKRASEKGQEAFIEK-VYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
VER IK+ + +G +A E VYE YG GGV+I+V+ LT+ R+VA VR + GG M
Sbjct: 66 VERAIKKGTGEGNDAVYEDMVYEGYGPGGVAILVKALTENKNRTVAEVRSTMSKKGGSMG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
+PG V + F ++ I D++ L+++AL+AGA+DV V+E D ++V
Sbjct: 126 EPGCVAWIFENKGLIEINKDSVDEETLMELALEAGADDV----VDEGDV--------FQV 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
V+ Y + + E G+ S + P TI + ++ + L +LDDV
Sbjct: 174 VTEPSEYFTVKNAIEEKGLAMSFSEVS-MKPKNTIPLSGSDLKKLFTITEALEDLDDVQE 232
Query: 318 VYTD 321
V+++
Sbjct: 233 VFSN 236
>gi|308803867|ref|XP_003079246.1| YebC-related (ISS) [Ostreococcus tauri]
gi|116057701|emb|CAL53904.1| YebC-related (ISS), partial [Ostreococcus tauri]
Length = 374
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 144/269 (53%), Gaps = 27/269 (10%)
Query: 67 TIRTFAP--VCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGG-PNPTSNTVLA 123
+I FA V GR+++KIA +KG DA + KLY R GK ++ VK+GG +P +N L
Sbjct: 20 SISGFASSKVLCGRKAAKIAAKKGKTDAARTKLYGRYGKLIVQTVKQGGSADPVANVALG 79
Query: 124 AVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVA 183
+L+ A+ +VP+D+++RNIK+A E + E YEVYG GGV IV EVLTD + R+
Sbjct: 80 RLLKAAQNANVPRDLIDRNIKKAQEGKTGDYFELTYEVYGAGGVGIVCEVLTDSVNRAAG 139
Query: 184 AVREVVKDCGGKMADPGSVMFKFRRARV---------VNIKFTDADKDQLLDIALDAGAE 234
R GG + RAR + + ++ + +IA+++GAE
Sbjct: 140 EKRR-----GGDESRRXXXXXXXTRARRRKPAEDGPNRGASWFNFNRRGVFEIAMESGAE 194
Query: 235 DVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPF-ETDNGSELLPITTIE 293
D+ ED D VV D++ + R+AG+ + + G + +P+ IE
Sbjct: 195 DIAPRSDGEDGWD---------VVCQLDDFAAVQDACRDAGLKVNDEETGLKCIPVAEIE 245
Query: 294 VDDEAMELNKELIAKLLELDDVDAVYTDQ 322
V DE +N++++ LL LDDVDAVYT +
Sbjct: 246 VSDEDAAINEKIVDALLALDDVDAVYTQE 274
>gi|385331784|ref|YP_005885735.1| protein YebC [Marinobacter adhaerens HP15]
gi|311694934|gb|ADP97807.1| protein YebC [Marinobacter adhaerens HP15]
Length = 247
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 139/243 (57%), Gaps = 16/243 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RK AQDAK+ K+++++ +E+ A ++GG NP N L AV++KA ++ KD
Sbjct: 6 KWANIKHRKAAQDAKRGKIFTKIIRELTVAARQGGGNPDDNPRLRAVIDKALTANMKKDT 65
Query: 139 VERNIKRASEKG-QEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ER ++R + G + + E+ YE YG GGV+I VEV+TD RSVA +R GG +
Sbjct: 66 IERAVERGTGGGDDDNYEEQTYEGYGPGGVAIFVEVMTDNKNRSVAEIRHAFNKMGGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV + F + +++ + ++D+L++ L AGAED+ +DD +++
Sbjct: 126 TDGSVAYLFSKQGIISYG-PEWEEDRLVEAVLSAGAEDL----AAQDDGS-------WEI 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
V+T + + D+ L AG+ DN ++P T +E+D + E +LI L +LDDV
Sbjct: 174 VTTPEQFLDVKESLVNAGLV--PDNAEVTMVPSTRVELDRDGAETILKLIDMLEDLDDVQ 231
Query: 317 AVY 319
VY
Sbjct: 232 NVY 234
>gi|441500313|ref|ZP_20982477.1| hypothetical protein C900_05160 [Fulvivirga imtechensis AK7]
gi|441435926|gb|ELR69306.1| hypothetical protein C900_05160 [Fulvivirga imtechensis AK7]
Length = 247
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 133/242 (54%), Gaps = 18/242 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKGAQDAK+ ++++++ KE+ A ++GGP+P N L ++ AK +VPKD +E
Sbjct: 8 ANIKRRKGAQDAKRGQIFTKLIKEITVAAREGGPDPEGNPRLRLAIQNAKGQNVPKDNIE 67
Query: 141 RNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
R I + S +IE YE YG GV++ VE TD + R+VA+VR + GG + G
Sbjct: 68 RAINKGSGSDAVDYIETTYEGYGPHGVAVFVECATDNLNRTVASVRSLFSKYGGSLGVNG 127
Query: 201 SVMFKF-RRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
SV + F R+ + ++ + D+D L +D GAE+V + E Y +V
Sbjct: 128 SVDYMFERKGTFLIVQNEETDQDDLTLELIDGGAEEV------------EFNEGYVEVTC 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+++ ++ KL E + ET +EL +P TT+ +DDE + +LI L + DDV
Sbjct: 176 AMEDFGNMQHKLDELSLEAET---AELQRIPTTTVALDDEQFDKVMKLIEALEDDDDVQK 232
Query: 318 VY 319
VY
Sbjct: 233 VY 234
>gi|88800177|ref|ZP_01115745.1| hypothetical protein MED297_13807 [Reinekea blandensis MED297]
gi|88777023|gb|EAR08230.1| hypothetical protein MED297_13807 [Reinekea sp. MED297]
Length = 240
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 140/242 (57%), Gaps = 16/242 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAK+ K+++++ +E++ A K GGPNP N L +V++KA ++ +D ++
Sbjct: 8 ANIKHRKAAQDAKRGKIFTKIIRELVVAAKTGGPNPEDNPTLRSVIDKALGANMKRDTID 67
Query: 141 RNIKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
+ I R A + + YE Y GGV++ V+ L+D R+V+ +R GG +
Sbjct: 68 KAIARGAGNADGDNYEAMTYEGYSAGGVAVYVKCLSDNRNRTVSEIRHCFTKTGGNLGTD 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F A + ++ A+++ L+++AL+AGAEDVI N+D + +++ +
Sbjct: 128 GSVAYLFSTAGQLFVE--KAEENALMEVALEAGAEDVI---ANDDGS--------FEIRT 174
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
D++T + L EAG +E + ++P T +V +A+E + LI L +LDDV AVY
Sbjct: 175 QPDDFTSVRNALVEAG--YEPEGEVTMIPSTETDVSGDAVETVQRLIDMLEDLDDVQAVY 232
Query: 320 TD 321
T+
Sbjct: 233 TN 234
>gi|91978632|ref|YP_571291.1| hypothetical protein RPD_4171 [Rhodopseudomonas palustris BisB5]
gi|123762431|sp|Q130U9.1|Y4171_RHOPS RecName: Full=Probable transcriptional regulatory protein RPD_4171
gi|91685088|gb|ABE41390.1| protein of unknown function DUF28 [Rhodopseudomonas palustris
BisB5]
Length = 248
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/241 (34%), Positives = 128/241 (53%), Gaps = 17/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA+++K +S++ +E+ A K G P+P N L A + A++ ++PKD +ER
Sbjct: 10 IMHRKGKQDAQRSKAFSKLAREITVAAKLGTPDPAMNPRLRAAVIAARQENMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A E + E YE YG GGV+++VE LTD R+ + +R GG + + GSV
Sbjct: 70 IKKAIGGDSENYDEIRYEGYGPGGVAVIVEALTDNRNRAASDIRSYFTKSGGNLGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R V+ A D +LD A++AGA+DV+ +E ++V ++ +
Sbjct: 130 SFMFDRTGVIEYDAGKASADDMLDAAIEAGADDVLS------------SEGGHEVFASQE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ D+ L F + L+ P T+ VDDE E +L+ L E DDV VY
Sbjct: 178 TFRDVAKALE---AKFGEPRKAALIWKPQNTVAVDDETGEKLFKLMEHLNEHDDVQNVYA 234
Query: 321 D 321
+
Sbjct: 235 N 235
>gi|114321639|ref|YP_743322.1| hypothetical protein Mlg_2492 [Alkalilimnicola ehrlichii MLHE-1]
gi|114228033|gb|ABI57832.1| protein of unknown function DUF28 [Alkalilimnicola ehrlichii
MLHE-1]
Length = 250
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/243 (35%), Positives = 137/243 (56%), Gaps = 16/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
S I RK AQDAK+ K++++ KE+ A + GGP+P SN L +++A ++PKD VE
Sbjct: 12 SNIQHRKKAQDAKRGKIFTKHIKEITVAARMGGPDPDSNPRLRLAIDRAFAQNMPKDNVE 71
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IKR + + E++ YE YG G +++V+ +TD R+V+ VR CGG +
Sbjct: 72 RAIKRGAGLDESVEYEELRYEGYGPSGAALMVDCMTDNRNRTVSDVRHAFTKCGGNLGTD 131
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F+ R V + D+D+L++ AL+AGAED++ N+DD+ +V++
Sbjct: 132 GSVSYLFQH-RGVLLYPPGTDEDRLMEAALEAGAEDIVH---NDDDS--------LEVLT 179
Query: 260 TSDNYTDITTKLREAGI-PFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
T ++Y + L AG+ P E+D + P + V+ E LI L +LDDV V
Sbjct: 180 TPEDYRPVRDALVAAGLEPAESD--VTMRPDIMVTVEGEDARRTARLIDMLEDLDDVQRV 237
Query: 319 YTD 321
YT+
Sbjct: 238 YTN 240
>gi|296112955|ref|YP_003626893.1| hypothetical protein MCR_0733 [Moraxella catarrhalis RH4]
gi|416155528|ref|ZP_11603940.1| hypothetical protein E9Y_00651 [Moraxella catarrhalis 101P30B1]
gi|416217329|ref|ZP_11624278.1| hypothetical protein E9G_05039 [Moraxella catarrhalis 7169]
gi|416222470|ref|ZP_11626121.1| hypothetical protein E9K_05054 [Moraxella catarrhalis 103P14B1]
gi|416230075|ref|ZP_11628223.1| hypothetical protein E9M_05798 [Moraxella catarrhalis 46P47B1]
gi|416232611|ref|ZP_11629006.1| hypothetical protein E9O_00390 [Moraxella catarrhalis 12P80B1]
gi|416238615|ref|ZP_11631495.1| hypothetical protein E9Q_04394 [Moraxella catarrhalis BC1]
gi|416241232|ref|ZP_11632613.1| hypothetical protein E9S_00330 [Moraxella catarrhalis BC7]
gi|416247675|ref|ZP_11635858.1| hypothetical protein E9U_07636 [Moraxella catarrhalis BC8]
gi|416250700|ref|ZP_11637380.1| hypothetical protein E9W_05929 [Moraxella catarrhalis CO72]
gi|416254542|ref|ZP_11638808.1| hypothetical protein EA1_03605 [Moraxella catarrhalis O35E]
gi|421779771|ref|ZP_16216263.1| hypothetical protein MCRH_0799 [Moraxella catarrhalis RH4]
gi|295920649|gb|ADG61000.1| conserved hypothetical protein [Moraxella catarrhalis BBH18]
gi|326561180|gb|EGE11545.1| hypothetical protein E9G_05039 [Moraxella catarrhalis 7169]
gi|326561619|gb|EGE11957.1| hypothetical protein E9M_05798 [Moraxella catarrhalis 46P47B1]
gi|326563982|gb|EGE14231.1| hypothetical protein E9K_05054 [Moraxella catarrhalis 103P14B1]
gi|326567632|gb|EGE17740.1| hypothetical protein E9O_00390 [Moraxella catarrhalis 12P80B1]
gi|326567932|gb|EGE18029.1| hypothetical protein E9Q_04394 [Moraxella catarrhalis BC1]
gi|326569487|gb|EGE19547.1| hypothetical protein E9U_07636 [Moraxella catarrhalis BC8]
gi|326572749|gb|EGE22735.1| hypothetical protein E9S_00330 [Moraxella catarrhalis BC7]
gi|326574031|gb|EGE23980.1| hypothetical protein E9W_05929 [Moraxella catarrhalis CO72]
gi|326577002|gb|EGE26897.1| hypothetical protein E9Y_00651 [Moraxella catarrhalis 101P30B1]
gi|326577472|gb|EGE27356.1| hypothetical protein EA1_03605 [Moraxella catarrhalis O35E]
gi|407813481|gb|EKF84263.1| hypothetical protein MCRH_0799 [Moraxella catarrhalis RH4]
Length = 249
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/248 (35%), Positives = 142/248 (57%), Gaps = 26/248 (10%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK QDA K K+++++ +E++SA K G P+P +N L AVLEKA ++ KD+++
Sbjct: 8 ANIKHRKAKQDAAKGKIFTKIIREIVSAAKSGDPDPANNPRLRAVLEKANAANMTKDVIK 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I+R + G +E++ YE YG GGV+++VE +TD + R+V VR GG +
Sbjct: 68 RAIERGAGGGDNDNMEEITYEGYGIGGVAVIVETMTDNVNRTVGEVRHAFSKNGGNLGTS 127
Query: 200 GSVMFKF-RRARVVNIKFTDAD-KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV + F +R ++ F D +D +++IAL+AGAED+ E+ E +
Sbjct: 128 GSVAYLFSKRGEII---FHDLSLEDSIMEIALEAGAEDI-----------ENDGESLLVI 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSE--LLPITTIEVD--DEAMELNKELIAKLLELD 313
S +D + + L AG+ T N E + P TT ++D D+A ++ K +I L +LD
Sbjct: 174 TSPAD-FGTVVDALIAAGL---TPNSMEVTMSPSTTADIDNIDDAQKVLK-MIDMLEDLD 228
Query: 314 DVDAVYTD 321
DV VYT+
Sbjct: 229 DVQEVYTN 236
>gi|257439631|ref|ZP_05615386.1| glucose-1-phosphate adenylyltransferase [Faecalibacterium
prausnitzii A2-165]
gi|257197935|gb|EEU96219.1| DNA-binding regulatory protein, YebC/PmpR family [Faecalibacterium
prausnitzii A2-165]
Length = 245
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 131/240 (54%), Gaps = 14/240 (5%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +K D +AK+++++G+E+ AV+ GGPNP SN+ LA ++ KAK + VP D ++
Sbjct: 8 NNIKRKKEKTDGARAKVFTKIGREISVAVRDGGPNPASNSKLADLIAKAKRMSVPNDNIQ 67
Query: 141 RNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
R IK+A + F YE YG GGV+++VE LTD R+ A +R GG + G
Sbjct: 68 RIIKKAEGGDKTEFEAITYEGYGPGGVAVMVETLTDNRNRTAADLRHYFDKNGGNLGAMG 127
Query: 201 SVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
V F F + V++I D D D+ + ALDAGAED D E ++ +
Sbjct: 128 CVAFLFSQKGVIDISLEDKDADEAMMDALDAGAEDF------------DAGEEAAEITTD 175
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDD-EAMELNKELIAKLLELDDVDAVY 319
+NY+ + + E G +D+ + ++P+TT + D + ++ +L+ L + DDV V+
Sbjct: 176 PENYSAVVKAMEEKGYEILSDDLA-MVPMTTTRLTDPDQLKAMGKLLDALEDNDDVQNVW 234
>gi|104783075|ref|YP_609573.1| hypothetical protein PSEEN4095 [Pseudomonas entomophila L48]
gi|95112062|emb|CAK16789.1| conserved hypothetical protein [Pseudomonas entomophila L48]
Length = 250
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 136/243 (55%), Gaps = 14/243 (5%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK QDAK+ K++++ +E+ A K+GGP+P SN L L+KA ++ +DI++
Sbjct: 8 ANIKHRKERQDAKRGKVFTKWIRELTVAAKQGGPDPASNPRLRLALDKALGANMSRDIID 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R + R + + +E++ YE YG GGV+I+VE +TD R+ AAVR CGG +
Sbjct: 68 RAVARGAGTNESDNVEELSYEGYGPGGVAIMVEAMTDNRNRTAAAVRHAFTKCGGNLGTD 127
Query: 200 GSVMFKF-RRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
GSV + F R+ ++ ++D L++ AL+AGA+DV+ NED + + V
Sbjct: 128 GSVAYLFERKGQISFAAELKVEEDALMEAALEAGADDVVN---NEDGS--------FDVF 176
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
++ ++ + L E G +D + P T+ E+D E E +LI L +LDDV V
Sbjct: 177 TSFSSFYAVRNALEEGGFK-ASDAEIVMQPTTSAELDQEGAEKVLKLIDMLEDLDDVQNV 235
Query: 319 YTD 321
Y++
Sbjct: 236 YSN 238
>gi|116618556|ref|YP_818927.1| hypothetical protein LEUM_1461 [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|339480802|ref|ZP_08656461.1| hypothetical protein LpseK3_03541 [Leuconostoc pseudomesenteroides
KCTC 3652]
gi|116097403|gb|ABJ62554.1| hypothetical protein LEUM_1461 [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
Length = 240
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/243 (35%), Positives = 135/243 (55%), Gaps = 20/243 (8%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ ++ A K GG +P N L V+EKAK ++PK+ ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKIAHDLYVAAKAGGADPDMNASLRLVVEKAKAANMPKENIQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ +AS F E YE YG GV+++VE TD I R+V++VR K GG + GSV
Sbjct: 70 LDKASGANGAKFEEVTYEGYGTAGVAVLVEASTDNINRTVSSVRNSFKHAGGALGTSGSV 129
Query: 203 MFKFRRARVVNI---KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
F F R + I F D D+D +L+ AL+AGAED+ T +D +++ +
Sbjct: 130 AFHFDRRGYLAIDRSAFPDLDEDTVLEAALEAGAEDM--------QTSDD----VFEIYT 177
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDVDA 317
++ + + L EAG FE + + P+ +E D E ++ +L+ +L + +DV A
Sbjct: 178 EPADFQAVESALTEAGYVFEDAEVTMIAQNPMDILEEDREKLD---KLVDELEDNEDVLA 234
Query: 318 VYT 320
VYT
Sbjct: 235 VYT 237
>gi|395244749|ref|ZP_10421703.1| UPF0082 protein LBGG_00571 [Lactobacillus hominis CRBIP 24.179]
gi|394482955|emb|CCI82711.1| UPF0082 protein LBGG_00571 [Lactobacillus hominis CRBIP 24.179]
Length = 243
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 128/240 (53%), Gaps = 15/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K GGP+P+ N L V++KA+ ++PK +ER
Sbjct: 10 IQGRKNAQDAKRGKVFQKLSREIYMAAKSGGPDPSGNPSLRLVMDKARAANMPKTNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A +E + E YE Y GGV+++VE LTD R+ + VR GG + GSV
Sbjct: 70 IKKAEGNSEEHYDEITYEGYAPGGVAVLVEALTDNKNRTASDVRVAFTRNGGSLGATGSV 129
Query: 203 MFKFRRARVVNI--KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R + I TDAD+DQ+L +DAG +D+ + ++ +++ +
Sbjct: 130 AYMFDRRGYIAIDRSTTDADEDQVLLDVMDAGGDDL------------ETSDEAFEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+T + L +AG D ++P T V + E + LI L + DDV VYT
Sbjct: 178 PKQFTAVRDALEKAGYKI-ADAELTMIPQNTTPVPADKKEQFEHLIDALEDNDDVSNVYT 236
>gi|371778148|ref|ZP_09484470.1| hypothetical protein AnHS1_12089 [Anaerophaga sp. HS1]
Length = 250
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 133/241 (55%), Gaps = 16/241 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKGAQDAK+AK+++R+ KE+ AVK+GGP+P SN L ++ A+ +++PKD +
Sbjct: 8 ANIKHRKGAQDAKRAKMFTRITKEIQVAVKEGGPDPESNPRLRLAIQNARSVNMPKDNIN 67
Query: 141 RNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
R I +ASE G +++ E +E YG GG+++ +E +TD R+V AVR + GG M G
Sbjct: 68 RAISKASEAGGDSYQEITFEGYGPGGIAVFLECMTDNNNRTVGAVRSIFNKRGGSMGTNG 127
Query: 201 SVMFKFRRARVVNIKFTDADKDQLLDIAL-DAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
S+ F F R V I T+ + L++ L DAGA+++ E V +
Sbjct: 128 SLSFLFERKGVFQIVKTNEMDLETLELELIDAGAQEIE------------MEEELIIVTT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
++ + KL E G+ E N S + +P T EVD E + +I + E DDV V
Sbjct: 176 EMADFGAVQKKLDELGVKVE--NASLQRIPNTYKEVDVETAKKFLRMIDEFEENDDVQNV 233
Query: 319 Y 319
Y
Sbjct: 234 Y 234
>gi|366053733|ref|ZP_09451455.1| hypothetical protein LsueK3_09471 [Lactobacillus suebicus KCTC
3549]
Length = 245
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 132/241 (54%), Gaps = 19/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +++ A K G P+P +N L V+EKA+ ++PKD V+R
Sbjct: 10 IQGRKNAQDAKRGKIFQKISRDLYQAAKAGDPDPANNPQLRLVMEKARSANMPKDNVQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
I +A+ G F E YE YG GG++++V LTD R+ AAVR GG + GSV
Sbjct: 70 IDKATGAGGAKFDEITYEGYGPGGIAVMVSALTDNKNRTAAAVRSAFTHSGGSLGATGSV 129
Query: 203 MFKF-RRARVVNIKFT-DADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F RR +V ++ D D+D +L ALDAGAED+ ED A +++ +
Sbjct: 130 SYMFNRRGYIVVLREDLDTDEDTMLMDALDAGAEDM---------NTEDGA---FEIFTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+ + L++ G +T +EL +P T +V ++ + LI +L DDV V
Sbjct: 178 PSDLASVRDALQDKGYELDT---AELTMIPENTTKVPEDKASQYQHLIDELESNDDVSDV 234
Query: 319 Y 319
Y
Sbjct: 235 Y 235
>gi|384215890|ref|YP_005607056.1| hypothetical protein BJ6T_21890 [Bradyrhizobium japonicum USDA 6]
gi|354954789|dbj|BAL07468.1| hypothetical protein BJ6T_21890 [Bradyrhizobium japonicum USDA 6]
Length = 248
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 129/241 (53%), Gaps = 17/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA+K+KL+ ++ +E+ A K G P+P N L A + A++ ++PKD +ER
Sbjct: 10 IMHRKGRQDAQKSKLFGKLAREITVAAKLGTPDPNMNPRLRAAIIAARQENMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+K+A E + E YE YG GGV+++VE LTD R+ + +R GG + + GSV
Sbjct: 70 VKKALGNEGENYDEIRYEGYGPGGVAVIVEALTDNRNRAASDIRSFFTKSGGNLGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R ++ + A D +LD A++AGA+DV+ E +++ ++++
Sbjct: 130 SFMFDRTGIIEYDRSVASDDAVLDAAIEAGADDVVS------------GEGGHEIYASTE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
Y D+ L F + L+ P T+ VDDE E +L+ L E DDV VY
Sbjct: 178 GYRDVAKALE---AKFGEPRKAALIWKPQNTVAVDDETGEKLLKLMDLLNEHDDVQQVYA 234
Query: 321 D 321
+
Sbjct: 235 N 235
>gi|295114114|emb|CBL32751.1| conserved hypothetical protein TIGR01033 [Enterococcus sp. 7L76]
Length = 242
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 131/243 (53%), Gaps = 16/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
S I GRK AQDAK+ K++ ++ +E+ A K GGP+P N L ++KAK ++P D +
Sbjct: 8 SNIQGRKNAQDAKRGKIFQKVSREIYMAAKAGGPDPAMNPALRLAVDKAKSANMPNDNIA 67
Query: 141 RNIKRASEKGQ-EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+AS G+ E + E YE YG GGV+++V LTD R+ VR GG + +
Sbjct: 68 RAIKKASSAGEGEHYDEVTYEGYGPGGVAVLVHALTDNRNRTATNVRVAFTRNGGSLGET 127
Query: 200 GSVMFKFRRARVVNIKFTDA--DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV + F R + IK D ++D +L++ L+AG ED+ P +++
Sbjct: 128 GSVNYMFDRKGYIVIKREDHAIEEDDMLEVVLEAGGEDLETSP------------EVFEI 175
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ +++T + L +AG + ++P T + +++E + L+ KL + DDV
Sbjct: 176 YTAPEDFTAVRDALEQAGYSLAQAELT-MVPQTLLTLNEEQKAQLERLVDKLEDDDDVSE 234
Query: 318 VYT 320
V+T
Sbjct: 235 VFT 237
>gi|350572171|ref|ZP_08940477.1| YebC like protein [Neisseria wadsworthii 9715]
gi|349790565|gb|EGZ44472.1| YebC like protein [Neisseria wadsworthii 9715]
Length = 242
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/246 (35%), Positives = 137/246 (55%), Gaps = 15/246 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +K QDAK+ K+++R+ KE+ A + GG +P SN L ++KA + ++PKD
Sbjct: 6 KWANIQHKKARQDAKRGKIFTRLIKEITVAARLGGGDPASNPRLRLAMDKAWDANMPKDN 65
Query: 139 VERNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
V+R I + + + A ++E YE YG GG +++V+ LTD TR+VA VR GG +
Sbjct: 66 VQRAIDKGTGNVEGADYVELRYEGYGIGGAALMVDCLTDNKTRTVADVRHAFNKNGGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G V F+F + FT+AD+D L++ AL+AGAEDVI DD E +V
Sbjct: 126 TDGCVAFQFEHQGY--LVFTNADEDALMEAALEAGAEDVI-----VDD------EGVIEV 172
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
++ ++ + T L EAG E + + T+ ++A ++ K LI L +LDDV
Sbjct: 173 ITAPADWAQVKTTLEEAGFKSEDGDVTMRAQNDTVLTGEDAEKMQK-LIDALEDLDDVQN 231
Query: 318 VYTDQI 323
VYT +
Sbjct: 232 VYTSAV 237
>gi|317154309|ref|YP_004122357.1| hypothetical protein Daes_2613 [Desulfovibrio aespoeensis Aspo-2]
gi|316944560|gb|ADU63611.1| protein of unknown function DUF28 [Desulfovibrio aespoeensis
Aspo-2]
Length = 247
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 134/245 (54%), Gaps = 24/245 (9%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKG QDAKKAK +++ K++I A K GG NP N+ L ++KAK++++PKD +E
Sbjct: 8 ANIQHRKGRQDAKKAKFFTKAAKDIILAAKAGGGNPEDNSGLRLAIQKAKQVNLPKDRIE 67
Query: 141 RNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
IK+ + E FIE +YE YG GGV+++V+ TD R+VA +R GG MA+
Sbjct: 68 NAIKKGTGELAGGDFIEVMYEGYGPGGVALLVDAATDNRNRTVAEIRHTFSKHGGSMAEA 127
Query: 200 GSVMFKFRRARVVNI---KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
G+V + F + V+ KFT+ DQL+++ L+AGAED++ DD D
Sbjct: 128 GAVSYMFSKKGVIIFDKEKFTE---DQLMEVGLEAGAEDIM------DDGDS------LI 172
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDD 314
V + ++ + +AG+ FE+ +E+ +P I VD L L + DD
Sbjct: 173 VHTAPGDFMAVQQAFTDAGMAFES---AEVGRVPENLIPVDVSTGRKTMNLFDALEDNDD 229
Query: 315 VDAVY 319
V VY
Sbjct: 230 VQKVY 234
>gi|258646856|ref|ZP_05734325.1| glucose-1-phosphate adenylyltransferase [Dialister invisus DSM
15470]
gi|260404295|gb|EEW97842.1| glucose-1-phosphate adenylyltransferase [Dialister invisus DSM
15470]
Length = 244
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 133/241 (55%), Gaps = 22/241 (9%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+KG DA +AK+ +++ KE+ A + GG +P N L L KAK+ +VPKD NI+R
Sbjct: 13 KKGKTDAIRAKITTKISKEITIAARMGGGDPVGNMRLKLALTKAKQNNVPKD----NIQR 68
Query: 146 ASEKGQEA-----FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
A KG A F E YE YG GG +++VE TD R+ A VR GG + PG
Sbjct: 69 AIAKGVGAASGAGFDEITYEGYGPGGAAVIVECNTDNRNRAAADVRHAFTHHGGSIGTPG 128
Query: 201 SVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
V + F++ ++ + AD+D L+ IALDAGAEDV TD D +++ +
Sbjct: 129 CVAWMFKKKGIIVVSKEAADEDTLMMIALDAGAEDV--------STDGDS----FEITTA 176
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+++ ++ L + GI E + ++P T+ ++ +A ++ +L ++L ELDDV VYT
Sbjct: 177 PEDFLTVSEALEKEGIAVEASEVT-MVPDNTVSLEGDAADVMNKLTSELEELDDVQDVYT 235
Query: 321 D 321
+
Sbjct: 236 N 236
>gi|238916834|ref|YP_002930351.1| hypothetical protein EUBELI_00902 [Eubacterium eligens ATCC 27750]
gi|259710169|sp|C4Z5P5.1|Y902_EUBE2 RecName: Full=Probable transcriptional regulatory protein
EUBELI_00902
gi|238872194|gb|ACR71904.1| glucose-1-phosphate adenylyltransferase [Eubacterium eligens ATCC
27750]
Length = 247
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 137/243 (56%), Gaps = 18/243 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ IA +K A DA K K+++R+GKE++ AVK+GGP+ +N+ L V+ K K ++P D ++
Sbjct: 8 ANIAHKKAANDAAKGKIFTRLGKELMIAVKEGGPDVNNNSKLRQVVAKCKAANMPNDTID 67
Query: 141 RNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
R IK+A+ + YE YG G +I+VE LTD R+ + +R GG + PG
Sbjct: 68 RAIKKAASNDMSNYESVTYEGYGPNGTAIIVEALTDNRNRAASNIRSAFTKGGGNVGTPG 127
Query: 201 SVMFKF--RRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
V F F + +V+ + D D+L+ +ALDAGA+D E E Y+++
Sbjct: 128 CVSFMFDNKGQMIVDKEEYTGDADELMMLALDAGADDFNEE------------EDCYEIL 175
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELLPITTIEV--DDEAMELNKELIAKLLELDDVD 316
++ + + + L +AG+ F + + ++P TT+++ +D+ ++N+ ++ L E DDV
Sbjct: 176 TSPEEFDAVNQALADAGVTFASAEVT-MIPQTTVDLTSEDDIKKMNR-ILGLLDEDDDVQ 233
Query: 317 AVY 319
VY
Sbjct: 234 NVY 236
>gi|257066699|ref|YP_003152955.1| hypothetical protein Apre_1210 [Anaerococcus prevotii DSM 20548]
gi|256798579|gb|ACV29234.1| protein of unknown function DUF28 [Anaerococcus prevotii DSM 20548]
Length = 243
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 133/245 (54%), Gaps = 14/245 (5%)
Query: 78 RRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKD 137
+ SKI +KG++DAKK K++++ + + A K+GG NP N L +EKAK ++P D
Sbjct: 5 NKWSKIKNKKGSEDAKKGKIFTKHARNITVAAKEGGTNPDYNPALKTAIEKAKADNMPND 64
Query: 138 IVERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKM 196
++R IK+A+ + + F +YE YG GGV+++V+ LTD R+ VR GG +
Sbjct: 65 NIDRAIKKAAGDDASDNFERVIYEGYGPGGVAVIVDCLTDNKNRTAPDVRHAFDKNGGNL 124
Query: 197 ADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
GSVMF F R + + D D+ + AL+AG EDV E Y++
Sbjct: 125 GTDGSVMFMFERKGDIIVGKEGKDFDEFMMDALEAGCEDVKEMG------------EYFE 172
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
++ +++ D KL+E G E+ + S L I+V+++ ++ +LI L + DDV
Sbjct: 173 AITDVNSFNDANDKLKELGYKIESADIS-YLANNMIKVEEDHVDKLNKLIDTLEDNDDVQ 231
Query: 317 AVYTD 321
VY++
Sbjct: 232 EVYSN 236
>gi|430004597|emb|CCF20396.1| conserved hypothetical protein; YebC-like [Rhizobium sp.]
Length = 248
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 129/239 (53%), Gaps = 13/239 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++S++ +E+ A K G P+P +N+ L ++ AK +PKD ++R
Sbjct: 10 IMHRKGRQDAIRSKMFSKLAREITVAAKSGLPDPAANSALRLAIQNAKAQSMPKDNIDRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+AS E + YE YG GGV+++VE LTD R+ ++VR GG + + GSV
Sbjct: 70 IKKASGADAENYDAVRYEGYGPGGVAVIVEALTDNRNRTASSVRSTFSKAGGALGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F + K + D D++++ A++AGA+DV+ TDED V++ +
Sbjct: 130 SFSFDHVGEITYKLSAGDADKMMEAAIEAGADDVV--------TDEDT-----HVITCAF 176
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
TK EA + + P T+ VD+E + +LI L + DDV VY++
Sbjct: 177 ESLGEVTKALEASLGEAETVKTVWKPQNTVPVDEEKAQSLMKLIDTLEDDDDVQNVYSN 235
>gi|53804482|ref|YP_113684.1| hypothetical protein MCA1220 [Methylococcus capsulatus str. Bath]
gi|67462035|sp|Q609L3.1|Y1220_METCA RecName: Full=Probable transcriptional regulatory protein MCA1220
gi|53758243|gb|AAU92534.1| conserved hypothetical protein TIGR01033 [Methylococcus capsulatus
str. Bath]
Length = 248
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 138/242 (57%), Gaps = 14/242 (5%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKGAQDAK+ KL++++ +E+ A + GGP+P +N L ++KA ++ KD +E
Sbjct: 8 ANIQHRKGAQDAKRGKLFTKLIREITVASRTGGPDPGNNPRLRTAIDKALVANMSKDTIE 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+ S E+V YE YG GG++++V+ LTD R+VA VR GG +
Sbjct: 68 RAIKKGSGAADGDNYEEVRYEGYGPGGIAVLVDCLTDNRNRTVAEVRHAFSKAGGNLGTD 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F + VV+ D +D++++ ALDAGA+DV+ VNED + V++
Sbjct: 128 GSVAYLFSKTGVVSFS-ADLGEDRVMEPALDAGADDVV---VNEDGS--------VDVLT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
D + + L AG+ E+ + + T++++D E E L+ +L +LDDV VY
Sbjct: 176 APDQFEAVRDALEAAGLTPESAEVT-MRASTSVKLDKEDAEKMIRLLERLEDLDDVQNVY 234
Query: 320 TD 321
++
Sbjct: 235 SN 236
>gi|85817741|gb|EAQ38915.1| conserved hypothetical protein [Dokdonia donghaensis MED134]
Length = 241
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 88/246 (35%), Positives = 137/246 (55%), Gaps = 15/246 (6%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR RK + + +K ++R+GK+++ AVK+GGP+P SN+ L AV++ AK +++P
Sbjct: 1 MGRAFEFRKARKMKRWSAMSKAFTRIGKDIVMAVKEGGPDPDSNSRLRAVIQNAKAVNMP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
KD VER IKRAS+K Q + E ++E Y G++I+VE TD TR+VA VR C G
Sbjct: 61 KDNVERAIKRASDKSQGDYKEVIFEGYAQHGIAILVETATDNNTRTVANVRAAFNKCDGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV+F F + D D++ +D GAE+V + DED Y
Sbjct: 121 LGTSGSVVFMFDHTCTFRVNAEGQDVDEIELEFIDFGAEEVFQ--------DEDGIHIY- 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLP-ITTIEVDDEAMELNKELIAKLLELDD 314
+ +++ I + L E GI ++G + +P +T ++ ++NK LI KL E DD
Sbjct: 172 ---APFESFGAIQSALEEKGIEI-LESGFDRIPQVTKTLTPEQEADVNK-LIDKLEEDDD 226
Query: 315 VDAVYT 320
V V++
Sbjct: 227 VQNVFS 232
>gi|124008996|ref|ZP_01693681.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
gi|123985422|gb|EAY25330.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
Length = 248
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 137/242 (56%), Gaps = 18/242 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKGAQDAK+ K+++++ KE+ A K G P+P +N L ++ AK +++PKD +E
Sbjct: 8 ANIKHRKGAQDAKRGKIFTKLIKEITVAAKIGSPDPETNPRLRLAIQNAKGVNMPKDNIE 67
Query: 141 RNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
R IK+A+ + E YE Y G+++ VE TD + R+VA+VR + GG +A G
Sbjct: 68 RAIKKATGADGTDYTETTYEGYAPNGIAVFVECTTDNLNRTVASVRSIFNKYGGNLATNG 127
Query: 201 SVMFKFRRARVVNI---KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
SV F F R V I + DAD+ + L++A D GAE+V + ++ Y V
Sbjct: 128 SVEFLFDRKGVFQIIRPEGIDADEFE-LELA-DGGAEEV------------EFSDDYIVV 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+++ ++ KL E I E + G E +P T++ + DE ++ + ++I KL + DDV
Sbjct: 174 TCAMEDFGNVQKKLDEMTIEAE-NAGLERIPTTSVNLSDEDLQQSMKVIDKLEDDDDVQK 232
Query: 318 VY 319
VY
Sbjct: 233 VY 234
>gi|402848490|ref|ZP_10896747.1| hypothetical protein YebC [Rhodovulum sp. PH10]
gi|402501237|gb|EJW12892.1| hypothetical protein YebC [Rhodovulum sp. PH10]
Length = 248
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 89/241 (36%), Positives = 132/241 (54%), Gaps = 17/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA+K+KL+ ++ +E+ A K G P+P N L A + A+ ++PKD +ER
Sbjct: 10 IMHRKGRQDAQKSKLFGKLAREITVAAKLGTPDPAMNPRLRAAIIAARAENMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A+ E + E YE YG GV+++VEVLTD R+ + VR GG +A+ G+V
Sbjct: 70 IKKAAGADTENYEEIRYEGYGPAGVAVIVEVLTDNRNRTASDVRSYFTKSGGNLAETGAV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R V+ A D +L+ A++AGA+DV +DE+ +++ ++ +
Sbjct: 130 SFMFDRLGVIEYPPEIASADAMLEAAIEAGADDVA--------SDEES----HEIFASQE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
Y D+ L E F + L+ P TI VDDEA E +LI L E DDV VY
Sbjct: 178 TYRDVAKVLEE---KFGEPRKAALVWKPQNTITVDDEAAEKLFKLIETLEEHDDVQNVYA 234
Query: 321 D 321
+
Sbjct: 235 N 235
>gi|300361336|ref|ZP_07057513.1| glucose-1-phosphate adenylyltransferase [Lactobacillus gasseri
JV-V03]
gi|300353955|gb|EFJ69826.1| glucose-1-phosphate adenylyltransferase [Lactobacillus gasseri
JV-V03]
Length = 243
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 130/242 (53%), Gaps = 19/242 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K GGP+P+ N L V++KA+ ++PK +ER
Sbjct: 10 IQGRKNAQDAKRGKVFQKLSREIYMAAKSGGPDPSGNPTLRMVMDKARAANMPKTNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A E + E YE Y GGV+++VE LTD R+ + VR GG + GSV
Sbjct: 70 IKKAEGNSDEHYDEITYEGYAPGGVAVLVEALTDNKNRTASDVRVAFTRNGGSLGATGSV 129
Query: 203 MFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R V++ TDAD+DQ+L +DAG +D+ +T++D +++ +
Sbjct: 130 AYMFDRKGYIVIDRSTTDADEDQVLLDVMDAGGDDL--------ETNDDA----FEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+T + L +AG +EL +P T V + E LI L + DDV V
Sbjct: 178 PKQFTAVRDALEKAGYKLAN---AELTMIPQNTTPVPADKKEQFSHLIDALEDNDDVSNV 234
Query: 319 YT 320
YT
Sbjct: 235 YT 236
>gi|358447635|ref|ZP_09158152.1| hypothetical protein KYE_00115 [Marinobacter manganoxydans MnI7-9]
gi|357228138|gb|EHJ06586.1| hypothetical protein KYE_00115 [Marinobacter manganoxydans MnI7-9]
Length = 247
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 138/243 (56%), Gaps = 16/243 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RK AQDAK+ K+++++ +E+ A ++GG NP N L AV++KA ++ KD
Sbjct: 6 KWANIKHRKAAQDAKRGKIFTKIIRELTVAARQGGGNPDDNPRLRAVIDKALTANMKKDT 65
Query: 139 VERNIKRASEKG-QEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ER ++R + G + + E YE YG GGV+I VEV+TD RSVA +R GG +
Sbjct: 66 IERAVERGAGGGDDDNYEELTYEGYGPGGVAIFVEVMTDNKNRSVAEIRHAFNKMGGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV + F + +++ + ++D+L++ L AGAED+ ED + +++
Sbjct: 126 TDGSVAYLFSKQGIISYG-PEWEEDRLVEAVLSAGAEDL---AAQEDGS--------WEI 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
V+T + + D+ L AG+ DN ++P T +E+D + E +LI L +LDDV
Sbjct: 174 VTTPEQFLDVKESLVNAGLV--PDNAEVTMVPSTRVELDRDGAETILKLIDMLEDLDDVQ 231
Query: 317 AVY 319
VY
Sbjct: 232 NVY 234
>gi|404495603|ref|YP_006719709.1| hypothetical protein Gmet_0743 [Geobacter metallireducens GS-15]
gi|418067852|ref|ZP_12705183.1| protein of unknown function DUF28 [Geobacter metallireducens RCH3]
gi|119369548|sp|Q39XN9.1|Y743_GEOMG RecName: Full=Probable transcriptional regulatory protein Gmet_0743
gi|78193218|gb|ABB30985.1| protein of unknown function DUF28 [Geobacter metallireducens GS-15]
gi|373558099|gb|EHP84461.1| protein of unknown function DUF28 [Geobacter metallireducens RCH3]
Length = 247
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 141/244 (57%), Gaps = 15/244 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ S I +KGA DAK+ K+++++ KE+ A K GG +P N L + ++KAK ++PKD
Sbjct: 6 KWSTIKHKKGAADAKRGKVFTKIIKEITVAAKLGGGDPNGNPRLRSAVDKAKAENMPKDN 65
Query: 139 VERNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ER IK+ + + + + E VYE YG GGV+++VE +TD R+V VR C G M
Sbjct: 66 IERAIKKGTGELEGVNYEEIVYEGYGPGGVAVLVECMTDNRNRTVGDVRSTFTKCNGNMG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
+ G V + F + ++ + DAD ++L ++AL+AGAEDV DE E Y+V
Sbjct: 126 ETGCVSWMFDKKGLIVVS-KDADFEKLFEVALEAGAEDV---------ADE---EEQYEV 172
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
++ ++ ++ L +AG E+ + ++P T +++D + E +L+ +L + DDV
Sbjct: 173 LTDPSSFMEVREALEKAGFAHESAEIT-MIPQTMVKLDGKNAENMLKLMDRLEDNDDVQN 231
Query: 318 VYTD 321
VY +
Sbjct: 232 VYAN 235
>gi|239618298|ref|YP_002941620.1| hypothetical protein Kole_1935 [Kosmotoga olearia TBF 19.5.1]
gi|259646525|sp|C5CGU7.1|Y1935_KOSOT RecName: Full=Probable transcriptional regulatory protein Kole_1935
gi|239507129|gb|ACR80616.1| protein of unknown function DUF28 [Kosmotoga olearia TBF 19.5.1]
Length = 252
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 140/245 (57%), Gaps = 20/245 (8%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAKK+K+++++ +E++ A ++GG +P +N L A +E+AK ++PKD +E
Sbjct: 8 ANIKHRKMAQDAKKSKIFTKIIRELMVAAREGGTDPNTNNALRAAIERAKAANMPKDTME 67
Query: 141 RNIKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
+ IK+ A E ++F+E +YEVY GGV++++ LTD R+ +R ++ GG MA+
Sbjct: 68 KAIKKGAGELEGQSFVEALYEVYAPGGVAMLIRALTDNKNRTAQEIRHLLSKHGGNMAES 127
Query: 200 GSVMFKFRRARVVNI---KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
GSV + F R V+ + + +D D+ QLL A+DAGAED+ +D+ D R
Sbjct: 128 GSVAWMFERKGVITVPRSEISDMDEFQLL--AIDAGAEDI------QDEEDPVR------ 173
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
+++ + +++ L E G + +P T+ V E +L+ L + DDV
Sbjct: 174 IITAPEEASNVKNALEENG--YTASYELTYIPKNTVSVSGNDAEKLLKLLNVLEDNDDVQ 231
Query: 317 AVYTD 321
VY +
Sbjct: 232 EVYAN 236
>gi|94264072|ref|ZP_01287871.1| Protein of unknown function DUF28 [delta proteobacterium MLMS-1]
gi|93455488|gb|EAT05678.1| Protein of unknown function DUF28 [delta proteobacterium MLMS-1]
Length = 249
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 84/246 (34%), Positives = 141/246 (57%), Gaps = 21/246 (8%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKGA DAK+ K++SR+ KE++ A + GG + T N L + L AK ++PK+ VE
Sbjct: 8 ANIKRRKGAVDAKRGKIFSRLNKEIMVAARLGGGDSTGNPRLRSALAAAKAENMPKENVE 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+ + + + A E++ YE YG GGV+++VE +TD R+VA VR GG + +
Sbjct: 68 RAIKKGTGELEGAAYEEITYEGYGPGGVAVLVEAMTDNRVRTVAEVRHAFSKAGGNLGET 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
SV + F + V I+ +D LL++AL+AGAED+I E+ ++++
Sbjct: 128 NSVSWMFDKKGQVFIERQGLAEDDLLEMALEAGAEDMISD------------EQSFQILC 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLEL----DDV 315
+ ++ LRE G+P ++ ++P +EV DE + ++L+ K+LE+ DDV
Sbjct: 176 DPGEFDQVSQALRERGLPV-SEAAVTMIPKNLVEVSDE--KTARQLL-KMLEMLEDNDDV 231
Query: 316 DAVYTD 321
V+++
Sbjct: 232 QQVHSN 237
>gi|332638204|ref|ZP_08417067.1| hypothetical protein WcibK1_05875 [Weissella cibaria KACC 11862]
Length = 240
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 135/241 (56%), Gaps = 16/241 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +++ +A K GG +P SN L V++KAK ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKLARDLYTAAKAGGVDPDSNAGLRLVIDKAKAANMPKDNIQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ +AS G + E YE YG GV+++V+ LTD I R+ A+VR K GG++ GSV
Sbjct: 70 LDKASGAGGANYQELTYEGYGPAGVAVLVQALTDNINRTAASVRSTFKHFGGELGTTGSV 129
Query: 203 MFKFRRARVVNIKF---TDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
F+F R + I+ D D+DQL + L+AGAED+ T +D+ +++ +
Sbjct: 130 SFQFDRKGYIEIERNEDNDIDEDQLFEDMLEAGAEDM--------KTYDDQ----FEIYT 177
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ ++ ++ L G D + ++ + V ++ L+ +L E DDV AV+
Sbjct: 178 DAKSFPEVRDALEAKGYTLVNDEVT-MVAQNPMAVPEDKQASLASLVDELEENDDVQAVF 236
Query: 320 T 320
T
Sbjct: 237 T 237
>gi|110833611|ref|YP_692470.1| hypothetical protein ABO_0750 [Alcanivorax borkumensis SK2]
gi|118574398|sp|Q0VRK0.1|Y750_ALCBS RecName: Full=Probable transcriptional regulatory protein ABO_0750
gi|110646722|emb|CAL16198.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
Length = 247
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 139/243 (57%), Gaps = 15/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAK+ K+++++ +E+ A K GG P N L A ++KA ++ +D ++
Sbjct: 8 ANIKHRKAAQDAKRGKIFTKLIRELTVAAKMGGGEPNDNPRLRAAIDKALGQNMTRDTID 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R +KR + + ++++ YE YG GGV+++VE +TD + R+VA VR GG +
Sbjct: 68 RAVKRGAGGDDDGSMDEITYEGYGKGGVAVLVETMTDNVNRTVAEVRHAFSKFGGNLGTS 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV F F + + + D+++L+++AL+AGAEDV E+ + + V++
Sbjct: 128 GSVAFLFTKRGEIFFE-PGVDEEKLMEVALEAGAEDV-----------EEMGDDGFLVIT 175
Query: 260 TSD-NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
T D ++ ++ LR AG+ F + + P T E+D + E +++I L +LDDV V
Sbjct: 176 TPDKSFGEVVDSLRAAGLEF-AEAEVTMHPSTEAEMDTDTAETVQKMIDMLEDLDDVQNV 234
Query: 319 YTD 321
YT+
Sbjct: 235 YTN 237
>gi|85714398|ref|ZP_01045386.1| hypothetical protein NB311A_15642 [Nitrobacter sp. Nb-311A]
gi|85698845|gb|EAQ36714.1| hypothetical protein NB311A_15642 [Nitrobacter sp. Nb-311A]
Length = 248
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 83/241 (34%), Positives = 129/241 (53%), Gaps = 17/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA+K+KL+S++ +E+ A K G P+P N L A + A+ ++PKD +ER
Sbjct: 10 IMHRKGRQDAQKSKLFSKLAREITVAAKLGTPDPAMNPRLRAAVIAARAENMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+AS E + E YE YG GGV++++EVLTD R+ + +R GG + + GSV
Sbjct: 70 IKKASGNDAENYDELRYEGYGPGGVAVIMEVLTDNRNRAASDIRSYFTKSGGNLGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R V+ D +L+ A++AGA+DV+ E +++ ++ +
Sbjct: 130 SFMFDRLGVIEYDPDKGSADDMLEAAIEAGADDVVS------------GEGGHEIYASQE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
++ D+ L + F L+ P T+ VDD E +LI +L E DDV VY
Sbjct: 178 SFRDVAKALED---KFGEARKVALIWKPQNTLAVDDNTGEKLLKLIDQLNEHDDVQNVYA 234
Query: 321 D 321
+
Sbjct: 235 N 235
>gi|28211819|ref|NP_782763.1| hypothetical protein CTC02215 [Clostridium tetani E88]
gi|33517010|sp|Q891Z5.1|Y2215_CLOTE RecName: Full=Probable transcriptional regulatory protein CTC_02215
gi|28204261|gb|AAO36700.1| glucose-1-phosphate adenylyltransferase [Clostridium tetani E88]
Length = 246
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 136/239 (56%), Gaps = 15/239 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I +KG DAK+ K+++++G+E+I A K+GG NP +N+ L V+ KA+ ++P+D + R
Sbjct: 10 IQAKKGKMDAKRGKIFTKIGRELIIASKEGGSNPDTNSKLRDVIAKARANNMPQDTISRA 69
Query: 143 IKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+ A E + E YE YG GV+ VV LTD R+ VR GG + + G
Sbjct: 70 IKKGAGELEGVNYEEMTYEGYGPNGVAFVVSTLTDNKNRTAGNVRAAFSKHGGNLGETGC 129
Query: 202 VMFKFR-RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
V + F+ + +++ + D D+D+++ +ALDAGAED + +E +++++T
Sbjct: 130 VGWMFQSKGQMIIERNEDMDEDEIMMVALDAGAEDF------------ESSEEVFEIITT 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+++ ++ KL G F + + ++P TTIE+ E ++LI KL + DDV VY
Sbjct: 178 PESFGEVREKLEAEGFEFISAEVT-MIPDTTIEISMERAAGLQKLIDKLEDDDDVQNVY 235
>gi|339624570|ref|ZP_08660359.1| hypothetical protein FfruK3_03905 [Fructobacillus fructosus KCTC
3544]
Length = 240
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 129/241 (53%), Gaps = 16/241 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ ++ A K GG +P N L V++KAK ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKLAHDLYVAAKAGGADPEMNASLRLVVDKAKAANMPKDNIQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ +AS G F E YE YG GV+++VE TD I R+V++VR K GG + GSV
Sbjct: 70 LDKASGAGGAKFEEVTYEGYGTAGVAVLVEASTDNINRTVSSVRNSFKHFGGSLGTSGSV 129
Query: 203 MFKFRRARVVNIKFT---DADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
F+F R I D D+D +L+ AL+AGAEDV ++ +++ +
Sbjct: 130 AFQFDRKGYFAIDREANPDLDEDTILEAALEAGAEDV------------QTSDEAFEIYT 177
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
++ + L EAG + ++ + + DE E +L+ +L + +DV AVY
Sbjct: 178 APSDFQAVEAALTEAGYDL-AEAEVTMIAQNPMSISDEDREKLDKLVDELEDNEDVLAVY 236
Query: 320 T 320
T
Sbjct: 237 T 237
>gi|198282208|ref|YP_002218529.1| hypothetical protein Lferr_0060 [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218666356|ref|YP_002424573.1| hypothetical protein AFE_0059 [Acidithiobacillus ferrooxidans ATCC
23270]
gi|416000561|ref|ZP_11560699.1| hypothetical protein GGI1_20463 [Acidithiobacillus sp. GGI-221]
gi|226734030|sp|B7J3G0.1|Y059_ACIF2 RecName: Full=Probable transcriptional regulatory protein AFE_0059
gi|226734031|sp|B5EJL6.1|Y060_ACIF5 RecName: Full=Probable transcriptional regulatory protein
Lferr_0060
gi|198246729|gb|ACH82322.1| protein of unknown function DUF28 [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218518569|gb|ACK79155.1| conserved hypothetical protein [Acidithiobacillus ferrooxidans ATCC
23270]
gi|339835973|gb|EGQ63600.1| hypothetical protein GGI1_20463 [Acidithiobacillus sp. GGI-221]
Length = 250
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 92/243 (37%), Positives = 140/243 (57%), Gaps = 17/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
S I +K +DAK+ K+++R+ +E+ A + GG +P SN+ L L+KA ++ KD +E
Sbjct: 8 STIKFKKALKDAKRGKIFTRLIREITVAARAGGGDPASNSRLRLALDKAYGANMTKDTIE 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IKR + + + E+V YE YG GGV+I++E +TD R+VA VR + GG M
Sbjct: 68 RAIKRGTGELEGVDYEEVTYEGYGPGGVAILIETMTDNKVRTVAEVRHIFSKRGGNMGTA 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV ++F++ ++ + DAD+D++L+ AL+AGAEDV VNE ER +
Sbjct: 128 GSVAYQFKKLGLI-VFPADADEDRILEAALEAGAEDV----VNE-------GERIAVYTA 175
Query: 260 TSDNYTDITTKLREAGI-PFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
SD ++ + L AG+ P E++ ++P TIEV E E LI L E DDV V
Sbjct: 176 PSDLHS-VVLALEAAGLKPEESE--MTMIPENTIEVSGEEAEKLLRLIDFLEENDDVQNV 232
Query: 319 YTD 321
Y +
Sbjct: 233 YAN 235
>gi|95931131|ref|ZP_01313856.1| protein of unknown function DUF28 [Desulfuromonas acetoxidans DSM
684]
gi|95132821|gb|EAT14495.1| protein of unknown function DUF28 [Desulfuromonas acetoxidans DSM
684]
Length = 248
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 139/242 (57%), Gaps = 15/242 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKGAQDAK+ K+++++ KE+ A K GG + +N L ++KAK ++PKD +E
Sbjct: 8 ANIKHRKGAQDAKRGKIFTKLIKEITVAAKIGGGDLEANPRLRTAVDKAKGGNMPKDTIE 67
Query: 141 RNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+ + + ++ E E YG GGV+++VE++TD TR+VA VR G +
Sbjct: 68 RAIKKGTGDLDGVSYEEGTMEGYGPGGVAVMVEIMTDNRTRTVADVRHCFTKHNGSLGVD 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV F F R ++ I +AD D + +IAL+ GAEDV +D E Y+V++
Sbjct: 128 GSVAFLFDRKGLIAIS-NEADFDTIFEIALENGAEDV-----------KDEGES-YEVIT 174
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ +T + L E GI FE+ + ++P T+E++ + E +L+ L + DDV VY
Sbjct: 175 EPNEFTAVRDALAEQGIEFESAEVT-MIPQNTVELEGKKAEQMLKLMDMLEDNDDVQNVY 233
Query: 320 TD 321
T+
Sbjct: 234 TN 235
>gi|331084959|ref|ZP_08334046.1| hypothetical protein HMPREF0987_00349 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330408659|gb|EGG88124.1| hypothetical protein HMPREF0987_00349 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 243
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 141/244 (57%), Gaps = 18/244 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGG-PNPTSNTVLAAVLEKAKELDVPKDIV 139
+ I +K DA K K+++++G+E+ AVK+GG P+P +N+ L V+ KAK ++P D +
Sbjct: 8 ANIKHKKEKNDAAKGKIFTKIGRELAVAVKEGGGPDPANNSRLRDVIAKAKANNMPNDNI 67
Query: 140 ERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMAD 198
+R+IK+A+ +G E + YE YG G +I+V+ LTD R+ + VR G +
Sbjct: 68 DRSIKKAAGEGSADNYEHITYEGYGPNGTAIIVKALTDNKNRTASNVRNAFTKGSGNVGT 127
Query: 199 PGSVMFKF-RRARVVNIKF-TDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
PG V F F + +++ K D D D+L+ +ALDAGAED +E E+D+ Y+
Sbjct: 128 PGCVSFMFDEKGQIIIAKEDCDMDSDELMMLALDAGAEDFVE----EEDS--------YE 175
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLEL-DDV 315
V++ ++++++ KL EAGIP + ++P T +E+ DE N + LLE DDV
Sbjct: 176 VLTVPEDFSEVRLKLEEAGIPMANAEVT-MIPQTWVELTDEQDLKNIQKTLDLLEEDDDV 234
Query: 316 DAVY 319
VY
Sbjct: 235 QEVY 238
>gi|332670541|ref|YP_004453549.1| hypothetical protein Celf_2032 [Cellulomonas fimi ATCC 484]
gi|332339579|gb|AEE46162.1| protein of unknown function DUF28 [Cellulomonas fimi ATCC 484]
Length = 251
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 131/240 (54%), Gaps = 19/240 (7%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K DAK+ KL++++ K + A + GG +P N L ++KAK+ VP D ++R +KR
Sbjct: 13 KKAVVDAKRGKLFAKLVKNIEVAARTGGGDPAGNPTLFDAIQKAKKSSVPNDNIDRALKR 72
Query: 146 ASEKGQEA----FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
S GQEA + +YE YG GGV+++VE LTD R+ + VR GG+MADPGS
Sbjct: 73 GS--GQEAGGADYQTIMYEGYGPGGVAVLVECLTDNRNRAASDVRVAFTRNGGQMADPGS 130
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
V + F R VV + D+D +++ LDAG E+V D E ++V+S +
Sbjct: 131 VSYIFSRKGVVIVPKEGTDEDAVMEAVLDAGGEEV-----------NDLGES-FEVLSEA 178
Query: 262 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ + T L+EAGI +++ + P T IEVD E LI L + DDV VY +
Sbjct: 179 TDLVPVRTSLQEAGIEYDSAD-VVFWPSTQIEVDAEGARKILRLIDALEDSDDVQNVYAN 237
>gi|27376645|ref|NP_768174.1| hypothetical protein blr1534 [Bradyrhizobium japonicum USDA 110]
gi|33517014|sp|Q89U83.1|Y1534_BRAJA RecName: Full=Probable transcriptional regulatory protein blr1534
gi|27349786|dbj|BAC46799.1| blr1534 [Bradyrhizobium japonicum USDA 110]
Length = 248
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 83/241 (34%), Positives = 128/241 (53%), Gaps = 17/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA+K+KL+ ++ +E+ A K G P+P N L A + A+ ++PKD +ER
Sbjct: 10 IMHRKGRQDAQKSKLFGKLAREITVAAKLGTPDPAMNPRLRAAVIAARAENMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A E + E YE YG GGV+++VE LTD R+ + +R GG + + GSV
Sbjct: 70 IKKALGSDGENYDEIRYEGYGPGGVAVIVEALTDNRNRAASDIRSFFTKSGGNLGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R ++ + A D +LD A++AGA+DV+ E +++ ++++
Sbjct: 130 SFMFDRTGIIEYDRSVASDDAVLDAAIEAGADDVVS------------GEGGHEIYASTE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
Y D+ L F + L+ P T+ VDDE E +L+ L E DDV VY
Sbjct: 178 GYRDVAKALE---AKFGEPRKAALIWKPQNTVAVDDETGEKLLKLMDLLNEHDDVQNVYA 234
Query: 321 D 321
+
Sbjct: 235 N 235
>gi|335041526|ref|ZP_08534553.1| hypothetical protein MAMP_00031 [Methylophaga aminisulfidivorans
MP]
gi|333788140|gb|EGL54022.1| hypothetical protein MAMP_00031 [Methylophaga aminisulfidivorans
MP]
Length = 249
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 140/244 (57%), Gaps = 18/244 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKGAQDAK+ KL++++ +E+ A K GG +P SN L A ++KA ++ KD++E
Sbjct: 8 ANIQHRKGAQDAKRGKLFTKLIREITVAAKMGGSDPASNPRLRAAIDKALGANMTKDVIE 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R KR + + + E++ YE YG G +I+V+ +TD R+VAAVR V GG M
Sbjct: 68 RATKRGAGELEGVNYEEIRYEGYGPNGTAIMVDCMTDNRNRTVAAVRNVFTKRGGNMGTD 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
G V F F + ++++ + D+D ++++AL+AGAED++ A+ V +
Sbjct: 128 GCVAFLFNKKGIISLA-SGTDEDAVMEVALEAGAEDIVT-----------NADGSIDVFT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTI--EVDDEAMELNKELIAKLLELDDVDA 317
+ ++Y+ + L AG+ E+ + + P TT+ +VDD +N +I +LDDV
Sbjct: 176 SPEDYSTVKDALDAAGLEAESAQVT-MHPDTTVSLDVDDAQKAIN--MIEAFEDLDDVQE 232
Query: 318 VYTD 321
VY++
Sbjct: 233 VYSN 236
>gi|344198382|ref|YP_004782708.1| hypothetical protein Acife_0144 [Acidithiobacillus ferrivorans SS3]
gi|343773826|gb|AEM46382.1| UPF0082 protein yeeN [Acidithiobacillus ferrivorans SS3]
Length = 250
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 92/243 (37%), Positives = 140/243 (57%), Gaps = 17/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
S I +K +DAK+ K+++R+ +E+ A + GG +P SN+ L L+KA ++ KD +E
Sbjct: 8 STIKFKKALKDAKRGKIFTRLIREITVAARAGGGDPASNSRLRLALDKAYGANMTKDTIE 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R +KR + + + E+V YE YG GGV+I++E +TD R+VA VR + GG M
Sbjct: 68 RAVKRGTGELEGVDYEEVTYEGYGPGGVAILIETMTDNKVRTVAEVRHIFSKRGGNMGTA 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV ++F++ ++ I DAD+D++L+ AL+AGAEDV VNE ER +
Sbjct: 128 GSVAYQFKKLGLI-IFPADADEDRILEAALEAGAEDV----VNE-------GERIAVYTA 175
Query: 260 TSDNYTDITTKLREAGI-PFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
SD ++ + L AG+ P E++ ++P TIEV E E LI L E DDV V
Sbjct: 176 PSDLHS-VVLALEAAGLKPEESE--MTMIPENTIEVSGEEAEKLLRLIDFLEENDDVQNV 232
Query: 319 YTD 321
Y +
Sbjct: 233 YAN 235
>gi|262197094|ref|YP_003268303.1| hypothetical protein [Haliangium ochraceum DSM 14365]
gi|262080441|gb|ACY16410.1| protein of unknown function DUF28 [Haliangium ochraceum DSM 14365]
Length = 249
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 138/247 (55%), Gaps = 20/247 (8%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ S I +K A DAK++K+++++ KEV A + GG +P N L ++KA+ +VPKD
Sbjct: 6 KWSTIKRKKAAVDAKRSKIWTKILKEVQVAARMGGADPDGNARLRMAVDKARGANVPKDT 65
Query: 139 VERNIKRASEKGQ-EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
++R I + S G + + E VYE YG GV++V+E +TD R+V+ +R ++ GG M
Sbjct: 66 LQRAIDKGSGAGAGDDWEEVVYEGYGPAGVAVVLECMTDNRNRTVSEIRHSLEKFGGNMG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV + F + ++++ +D+L+++AL+AGAEDV DD E + V
Sbjct: 126 TTGSVSWMFNKRGIIHVLKDATSEDKLMEVALEAGAEDV------RDD------EEVWTV 173
Query: 258 VSTSDNYTDITTKLREAGIPFET---DNGSELLPITTIEVDDEAMELNKELIAKLLELDD 314
+ N+ + LREAGI E DN +P IEV ++ E +++ L +LDD
Sbjct: 174 DTEPSNFIGVQDALREAGIEVENAEIDN----IPDNRIEVPEDKAESLVKMLGTLEDLDD 229
Query: 315 VDAVYTD 321
V VY +
Sbjct: 230 VQNVYAN 236
>gi|104773767|ref|YP_618747.1| hypothetical protein Ldb0677 [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|116513771|ref|YP_812677.1| hypothetical protein LBUL_0609 [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|385815391|ref|YP_005851782.1| hypothetical protein [Lactobacillus delbrueckii subsp. bulgaricus
2038]
gi|418035513|ref|ZP_12673970.1| hypothetical protein LDBUL1519_00670 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
gi|118574391|sp|Q1GAZ3.1|Y677_LACDA RecName: Full=Probable transcriptional regulatory protein Ldb0677
gi|122275459|sp|Q04BD3.1|Y609_LACDB RecName: Full=Probable transcriptional regulatory protein LBUL_0609
gi|103422848|emb|CAI97506.1| Conserved hypothetical protein [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|116093086|gb|ABJ58239.1| hypothetical protein LBUL_0609 [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|325125428|gb|ADY84758.1| Hypothetical conserved protein [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
gi|354690502|gb|EHE90450.1| hypothetical protein LDBUL1519_00670 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
Length = 243
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 131/242 (54%), Gaps = 19/242 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K GGP+P N L ++KA+ ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKVFQKLSREIYMAAKSGGPDPLGNPRLRLAVDKARAANMPKDNIQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A E + E YE Y GGV+I+VE LTD R+ ++VR GG + GSV
Sbjct: 70 IKKAEGNSDEHYDEVTYEGYAPGGVAILVEALTDNKNRTASSVRVAFTRNGGSLGATGSV 129
Query: 203 MFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R V++ TDAD+DQ+L ++AG +D+ DD Y++ +
Sbjct: 130 AYMFDRKGYIVIDRSTTDADEDQMLMDVMEAGGDDL----QTSDDA--------YEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+ ++T + L +AG SEL +P T V + E ++L+ L + DDV V
Sbjct: 178 AKSFTAVRDALEKAGYQLAV---SELTMVPQNTTPVPADKKEQFEKLVDALEDDDDVSNV 234
Query: 319 YT 320
YT
Sbjct: 235 YT 236
>gi|58337048|ref|YP_193633.1| hypothetical protein LBA0733 [Lactobacillus acidophilus NCFM]
gi|227903611|ref|ZP_04021416.1| protein of hypothetical function DUF28 [Lactobacillus acidophilus
ATCC 4796]
gi|67461868|sp|Q5FL22.1|Y733_LACAC RecName: Full=Probable transcriptional regulatory protein LBA0733
gi|58254365|gb|AAV42602.1| hypothetical protein LBA0733 [Lactobacillus acidophilus NCFM]
gi|227868498|gb|EEJ75919.1| protein of hypothetical function DUF28 [Lactobacillus acidophilus
ATCC 4796]
Length = 242
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 83/240 (34%), Positives = 126/240 (52%), Gaps = 15/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K GGP+P N L V++KA+ ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKVFQKLSREIYMAAKSGGPDPDGNPALRMVIDKARSNNMPKDNIQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A E + E YE Y GGV++ VE LTD R+ + VR GG + GSV
Sbjct: 70 IKKAEGGSDEHYDEITYEGYAPGGVAVFVEALTDNKNRTASDVRVAFTRNGGSLGATGSV 129
Query: 203 MFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R V++ TDAD+DQ+L +DAG +D+ DD Y++ +
Sbjct: 130 AYMFDRKGYIVIDRSTTDADEDQVLLDVMDAGGDDL----QTSDDA--------YEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ ++ L +AG D ++P T V + E + L+ L + DDV VYT
Sbjct: 178 PKQFAEVRDALIKAGYKL-ADAELTMIPQNTTPVPADKKEQFEHLVEALEDSDDVQNVYT 236
>gi|418029141|ref|ZP_12667689.1| hypothetical protein LDBUL1632_00483 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
gi|354690859|gb|EHE90801.1| hypothetical protein LDBUL1632_00483 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
Length = 243
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 131/242 (54%), Gaps = 19/242 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K GGP+P N L ++KA+ ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKVFQKLSREIYMAAKSGGPDPLGNPRLRLAVDKARAANMPKDNIQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A E + E YE Y GGV+I+VE LTD R+ ++VR GG + GSV
Sbjct: 70 IKKAEGNSDEHYDEVTYEGYAPGGVAILVEALTDNKNRTASSVRVAFTRNGGSLGATGSV 129
Query: 203 MFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R V++ TDAD+DQ+L ++AG +D+ DD Y++ +
Sbjct: 130 AYMFDRKGYIVIDRSTTDADEDQMLMDVMEAGGDDL----QTSDDA--------YEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+ ++T + L +AG SEL +P T V + E ++L+ L + DDV V
Sbjct: 178 AKSFTAVRDALEKAGYKLAV---SELTMVPQNTTPVPADKKEQFEKLVDALEDDDDVSNV 234
Query: 319 YT 320
YT
Sbjct: 235 YT 236
>gi|116629905|ref|YP_815077.1| hypothetical protein LGAS_1276 [Lactobacillus gasseri ATCC 33323]
gi|238853649|ref|ZP_04644017.1| conserved hypothetical protein [Lactobacillus gasseri 202-4]
gi|282851506|ref|ZP_06260871.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
gasseri 224-1]
gi|311110459|ref|ZP_07711856.1| conserved hypothetical protein [Lactobacillus gasseri MV-22]
gi|420148474|ref|ZP_14655742.1| Putative transcriptional regulatory protein [Lactobacillus gasseri
CECT 5714]
gi|122273157|sp|Q042I3.1|Y1276_LACGA RecName: Full=Probable transcriptional regulatory protein LGAS_1276
gi|116095487|gb|ABJ60639.1| hypothetical protein LGAS_1276 [Lactobacillus gasseri ATCC 33323]
gi|238833687|gb|EEQ25956.1| conserved hypothetical protein [Lactobacillus gasseri 202-4]
gi|282557474|gb|EFB63071.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
gasseri 224-1]
gi|311065613|gb|EFQ45953.1| conserved hypothetical protein [Lactobacillus gasseri MV-22]
gi|398400026|gb|EJN53622.1| Putative transcriptional regulatory protein [Lactobacillus gasseri
CECT 5714]
Length = 243
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 129/242 (53%), Gaps = 19/242 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K GGP+P+ N L V++KA+ ++PK +ER
Sbjct: 10 IQGRKNAQDAKRGKVFQKLSREIYMAAKSGGPDPSGNPTLRMVMDKARAANMPKTNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A E + E YE Y GGV+++VE LTD R+ + VR GG + GSV
Sbjct: 70 IKKAEGNSDEHYDEITYEGYAPGGVAVLVEALTDNKNRTASDVRVAFTRNGGSLGATGSV 129
Query: 203 MFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R V++ TDAD+DQ+L +DAG +D+ +T +D +++ +
Sbjct: 130 AYMFDRKGYIVIDRSTTDADEDQVLLDVMDAGGDDL--------ETSDDA----FEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+T + L +AG +EL +P T V + E LI L + DDV V
Sbjct: 178 PKQFTAVRDALEKAGYKLAN---AELTMIPQNTTPVPADKKEQFTHLIDALEDNDDVSNV 234
Query: 319 YT 320
YT
Sbjct: 235 YT 236
>gi|42518829|ref|NP_964759.1| hypothetical protein LJ0904 [Lactobacillus johnsonii NCC 533]
gi|227889668|ref|ZP_04007473.1| protein of hypothetical function DUF28 [Lactobacillus johnsonii
ATCC 33200]
gi|268319775|ref|YP_003293431.1| hypothetical protein FI9785_1304 [Lactobacillus johnsonii FI9785]
gi|385826178|ref|YP_005862520.1| hypothetical protein [Lactobacillus johnsonii DPC 6026]
gi|417837868|ref|ZP_12484106.1| hypothetical protein PF01_00971 [Lactobacillus johnsonii pf01]
gi|49036509|sp|P62037.1|Y904_LACJO RecName: Full=Probable transcriptional regulatory protein LJ_0904
gi|41583115|gb|AAS08725.1| hypothetical protein LJ_0904 [Lactobacillus johnsonii NCC 533]
gi|227849811|gb|EEJ59897.1| protein of hypothetical function DUF28 [Lactobacillus johnsonii
ATCC 33200]
gi|262398150|emb|CAX67164.1| hypothetical protein predicted by Glimmer/Critica [Lactobacillus
johnsonii FI9785]
gi|329667622|gb|AEB93570.1| hypothetical protein LJP_1248c [Lactobacillus johnsonii DPC 6026]
gi|338761411|gb|EGP12680.1| hypothetical protein PF01_00971 [Lactobacillus johnsonii pf01]
Length = 243
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 129/242 (53%), Gaps = 19/242 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K GGP+P+ N L V++KA+ ++PK +ER
Sbjct: 10 IQGRKNAQDAKRGKVFQKLSREIYMAAKSGGPDPSGNPTLRMVMDKARAANMPKTNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A E + E YE Y GGV+++VE LTD R+ + VR GG + GSV
Sbjct: 70 IKKAEGNSDEHYDEITYEGYAPGGVAVLVEALTDNKNRTASDVRVAFTRNGGSLGATGSV 129
Query: 203 MFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R V++ TDAD+DQ+L +DAG +D+ +T +D +++ +
Sbjct: 130 AYMFDRKGYLVIDRSTTDADEDQVLLDVMDAGGDDL--------ETSDDA----FEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+T + L +AG +EL +P T V + E LI L + DDV V
Sbjct: 178 PKQFTAVRDALEKAGYKLAN---AELTMIPQNTTPVPADKKEQFAHLIDALEDNDDVSNV 234
Query: 319 YT 320
YT
Sbjct: 235 YT 236
>gi|255971123|ref|ZP_05421709.1| conserved hypothetical protein [Enterococcus faecalis T1]
gi|255962141|gb|EET94617.1| conserved hypothetical protein [Enterococcus faecalis T1]
Length = 242
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 130/243 (53%), Gaps = 16/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
S I GRK AQDAK+ K++ ++ +E+ A K GGP+P N L ++KAK ++P D +
Sbjct: 8 SNIQGRKNAQDAKRGKIFQKVSREIYMAAKAGGPDPAMNPALRLAVDKAKSANMPNDNIA 67
Query: 141 RNIKRASEKGQ-EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+AS G+ E + E YE YG GGV+++V LTD R+ VR GG + +
Sbjct: 68 RAIKKASSAGEGEHYDEVTYEGYGPGGVAVLVHALTDNRNRTATNVRVAFTRNGGSLGET 127
Query: 200 GSVMFKFRRARVVNIKFTDA--DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV + F R + IK D ++D +L++ L+AG ED+ P +++
Sbjct: 128 GSVNYMFDRKGYIVIKREDHAIEEDDMLEVVLEAGGEDLETSP------------EVFEI 175
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ +++T + L +A + ++P T + ++DE + L+ KL + DDV
Sbjct: 176 YTAPEDFTAVRDALEQADYSLAQAELT-MVPQTLLTLNDEQKAQLERLVDKLEDDDDVSE 234
Query: 318 VYT 320
V+T
Sbjct: 235 VFT 237
>gi|261367274|ref|ZP_05980157.1| glucose-1-phosphate adenylyltransferase [Subdoligranulum variabile
DSM 15176]
gi|282570876|gb|EFB76411.1| DNA-binding regulatory protein, YebC/PmpR family [Subdoligranulum
variabile DSM 15176]
Length = 245
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 125/225 (55%), Gaps = 15/225 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +K D +AK+++++G+E+ AVK+GG NP SN+ LAA++ KAK VP D ++
Sbjct: 8 NNIKRKKEKTDGARAKVFTKIGREIAVAVKEGGSNPASNSKLAALITKAKANSVPNDNIQ 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IKRA E G +A E + YE YG GGV+++VE LTD R+ A +R GG +
Sbjct: 68 RIIKRA-EGGDKADYEAMTYEGYGPGGVAVMVETLTDNRNRTAANMRHYFDKFGGNLGQM 126
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
G V F F + V+ + D D D+L+ ALDAGAED D E +V +
Sbjct: 127 GCVSFMFTQKGVIVVDLEDKDPDELMMDALDAGAEDF------------DAGEEAAQVTT 174
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVD-DEAMELNK 303
T +N+T + L+ G F + + +++ TT D D+ ++ K
Sbjct: 175 TPENFTAVCDALQNKGYTFISADVAQVPATTTTLTDPDQLTQMGK 219
>gi|385808901|ref|YP_005845297.1| hypothetical protein IALB_0317 [Ignavibacterium album JCM 16511]
gi|383800949|gb|AFH48029.1| Hypothetical protein IALB_0317 [Ignavibacterium album JCM 16511]
Length = 245
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 132/241 (54%), Gaps = 16/241 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I +K A DAKK K+++++ KE+ A ++GG +P N L ++ AK ++P + +ER
Sbjct: 10 IKRKKAALDAKKGKIFTKLIKEITIAARQGGGDPAGNPRLRLAIDNAKSENMPAENIERA 69
Query: 143 IKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+A+ E + E YE YG GV+++VEV TD R+VA VR + GG + + GS
Sbjct: 70 IKKATGELEGVTYHELTYEGYGPAGVAMLVEVATDNKNRTVAEVRHIFSKHGGSLGETGS 129
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
V + F R V+ I D +D +L I LDAGA+D+ E +Y++ +T
Sbjct: 130 VAWMFERKGVITIPKQDKSEDDILAIVLDAGADDL------------QTEEEFYEITTTV 177
Query: 262 DNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+N+ + L+E + + DN S + + TIEV E E +LI L + DDV VY+
Sbjct: 178 ENFESVRKALQENNL--KVDNASLQWIAKNTIEVKGEDAEKVMKLIEALEDCDDVQNVYS 235
Query: 321 D 321
+
Sbjct: 236 N 236
>gi|218780798|ref|YP_002432116.1| hypothetical protein Dalk_2958 [Desulfatibacillum alkenivorans
AK-01]
gi|226701573|sp|B8FL13.1|Y2958_DESAA RecName: Full=Probable transcriptional regulatory protein Dalk_2958
gi|218762182|gb|ACL04648.1| protein of unknown function DUF28 [Desulfatibacillum alkenivorans
AK-01]
Length = 247
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 131/243 (53%), Gaps = 14/243 (5%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ S I +KGA DAK+ K++S++ KE+ A + GG +P +N L + AK ++PKD
Sbjct: 6 KWSTIKHKKGAADAKRGKVFSKLIKEITIAARMGGGDPDANPRLRTAINAAKAENMPKDN 65
Query: 139 VERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
ER IK+ + + + E+ YE YG GG +++VE LTD R+ A +R + CGG +
Sbjct: 66 WERAIKKGTGELEGVNYEEFQYEGYGPGGGAVLVESLTDNKNRAAAEIRHIFSKCGGSLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
+ G V + F + + + + D+D L++IAL+AGAEDV E A ++V
Sbjct: 126 EAGCVAWMFDKKGYIVVNQSVTDEDTLMEIALEAGAEDVRE------------AGDVFEV 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
++ D+Y + + AGI E D LP T+EV + E L+ L + DDV
Sbjct: 174 ITQPDDYDAVKEAIDAAGIETE-DASVTKLPQNTVEVTGKEAEQMVRLLQTLDDCDDVQN 232
Query: 318 VYT 320
VYT
Sbjct: 233 VYT 235
>gi|336320690|ref|YP_004600658.1| hypothetical protein Celgi_1579 [[Cellvibrio] gilvus ATCC 13127]
gi|336104271|gb|AEI12090.1| protein of unknown function DUF28 [[Cellvibrio] gilvus ATCC 13127]
Length = 251
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 133/240 (55%), Gaps = 19/240 (7%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++++ K + A + GG +P N L ++KAK+ VP D ++R +KR
Sbjct: 13 KKAAIDAKRGKLFAKLVKNIEVAARTGGGDPAGNPTLFDAIQKAKKSSVPNDNIDRALKR 72
Query: 146 ASEKGQEA----FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
S GQEA + +YE YG GGV+++VE LTD R+ + VR GG+MADPGS
Sbjct: 73 GS--GQEAGGADYQTIMYEGYGPGGVAVLVECLTDNRNRAASDVRVAFTRNGGQMADPGS 130
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
V + F R VV + D+D +++ L+AG E+V D E+ ++V+S +
Sbjct: 131 VSYLFSRKGVVIVPKEGTDEDAVMEAVLEAGGEEVT-----------DLGEQ-FEVLSEA 178
Query: 262 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ + T L+EAGI +++ + P T IEVD + LI L + DDV VY +
Sbjct: 179 TDLVPVRTALQEAGIEYDSAD-VVFWPATQIEVDADGARKILRLIDALEDSDDVQNVYAN 237
>gi|256846085|ref|ZP_05551543.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
gi|256719644|gb|EEU33199.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
Length = 249
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 136/247 (55%), Gaps = 19/247 (7%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RKGAQD K+AKL+++ G+E+ A K+GG +P N L +EKAK ++PKDI
Sbjct: 6 KWNNIQHRKGAQDKKRAKLFTKFGRELTIAAKEGGSDPNFNPRLRLAIEKAKAGNMPKDI 65
Query: 139 VERNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ER IK+ S + + F E YE YG G + +VE +TD R+ + +R G +
Sbjct: 66 LERAIKKGSGELEGVDFTEMRYEGYGPAGTAFIVEAVTDNKNRTASEMRMTFTRKDGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G+V + F++ ++ +K D D+ + AL+AGAEDV EDD Y++V
Sbjct: 126 ADGAVSWMFKKKGIITVKAEGIDTDEFMMAALEAGAEDVT-----EDDG-------YFEV 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIA---KLLELDD 314
+ + + L+ AG +E S ++P T+E+ D +E K+++A L +LDD
Sbjct: 174 TTEYTEFQTVLENLKNAGYQYEEAEIS-MIPENTVEISD--LETAKKVMALYDALEDLDD 230
Query: 315 VDAVYTD 321
VY++
Sbjct: 231 SQNVYSN 237
>gi|148269594|ref|YP_001244054.1| hypothetical protein Tpet_0454 [Thermotoga petrophila RKU-1]
gi|281411688|ref|YP_003345767.1| hypothetical protein Tnap_0248 [Thermotoga naphthophila RKU-10]
gi|166227268|sp|A5IJV5.1|Y454_THEP1 RecName: Full=Probable transcriptional regulatory protein Tpet_0454
gi|147735138|gb|ABQ46478.1| protein of unknown function DUF28 [Thermotoga petrophila RKU-1]
gi|281372791|gb|ADA66353.1| protein of unknown function DUF28 [Thermotoga naphthophila RKU-10]
Length = 253
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 141/245 (57%), Gaps = 20/245 (8%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAKK+K+++++ +E+I A ++GG N +N L A +EKA+ ++PK+ +E
Sbjct: 8 ANIKHRKMAQDAKKSKIFTKLIREIIVAAREGGGNIETNPRLRAAVEKARAENMPKENIE 67
Query: 141 RNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IKR + + + + E +YE Y GGV++ + LTD R+ +R + GG +A+
Sbjct: 68 RAIKRGTGELEGVDYQEVIYEGYAPGGVAVYIRALTDNKNRTAQELRHLFNKYGGSLAES 127
Query: 200 GSVMFKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDV--IEPPVNEDDTDEDRAERYYK 256
GSV + F R V+ I D ++L+ IA+DAGAED+ E P+ +
Sbjct: 128 GSVSWIFERKGVIEIPRDKVKDLEELMMIAIDAGAEDIKDTEDPI--------------Q 173
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
+++T +N +++ +KL EAG +E + +P T++V + E E + L ++DDV
Sbjct: 174 IITTPENLSEVKSKLEEAG--YEVEAKVTFIPKNTMKVTGKDAEKVLEFLNALEDMDDVQ 231
Query: 317 AVYTD 321
VY++
Sbjct: 232 EVYSN 236
>gi|254303430|ref|ZP_04970788.1| hypothetical protein FNP_1082 [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148323622|gb|EDK88872.1| hypothetical protein FNP_1082 [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 249
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 135/247 (54%), Gaps = 19/247 (7%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RKGAQD K+AKL+++ G+E+ A K+GG +P N L +EKAK ++PKDI
Sbjct: 6 KWNNIQHRKGAQDKKRAKLFTKFGRELTIAAKEGGSDPNFNPRLRLAIEKAKAGNMPKDI 65
Query: 139 VERNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ER IK+ S + + F E YE YG G + +VE +TD R+ + +R G +
Sbjct: 66 LERAIKKGSGELEGVDFTEMRYEGYGPAGTAFIVEAVTDNKNRTASEMRMTFSRKDGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G+V + F++ ++ +K D D+ + AL+AGAEDV E E Y++V
Sbjct: 126 ADGAVSWMFKKKGIITVKAEGIDTDEFMMAALEAGAEDVTEE------------EGYFEV 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIA---KLLELDD 314
+ + + L+ AG +E S ++P T+++ D +E K+++A L +LDD
Sbjct: 174 TTEYTEFQTVLENLKNAGYQYEEAEIS-MIPENTVQITD--LETAKKVMALYDALEDLDD 230
Query: 315 VDAVYTD 321
VY++
Sbjct: 231 SQNVYSN 237
>gi|422338848|ref|ZP_16419808.1| hypothetical protein HMPREF9369_00895 [Fusobacterium nucleatum
subsp. polymorphum F0401]
gi|355371975|gb|EHG19318.1| hypothetical protein HMPREF9369_00895 [Fusobacterium nucleatum
subsp. polymorphum F0401]
Length = 249
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 136/247 (55%), Gaps = 19/247 (7%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RKGAQD K+AKL+++ G+E+ A K+GG +P N L +EKAK ++PKDI
Sbjct: 6 KWNNIQHRKGAQDKKRAKLFTKFGRELTIAAKEGGSDPNFNPRLRLAIEKAKAGNMPKDI 65
Query: 139 VERNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ER IK+ S + + F E YE YG G + +VE +TD R+ + +R G +
Sbjct: 66 LERAIKKGSGELEGVDFTEMRYEGYGPAGTAFIVEAVTDNKNRTASEMRMTFTRKDGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G+V + F++ V+ +K D D+ + AL+AGAEDV EDD Y++V
Sbjct: 126 ADGAVSWMFKKKGVITVKAEGIDADEFMMAALEAGAEDVT-----EDDG-------YFEV 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIA---KLLELDD 314
+ + + L+ AG +E S ++P T+E+ D +E K+++A L +LDD
Sbjct: 174 TTEYTEFQTVLENLKNAGYQYEEAEIS-MIPENTVEITD--LETAKKVMALYDALEDLDD 230
Query: 315 VDAVYTD 321
VY++
Sbjct: 231 SQNVYSN 237
>gi|302385988|ref|YP_003821810.1| hypothetical protein Closa_1590 [Clostridium saccharolyticum WM1]
gi|302196616|gb|ADL04187.1| protein of unknown function DUF28 [Clostridium saccharolyticum WM1]
Length = 242
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 139/246 (56%), Gaps = 23/246 (9%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +K DA K K+++ +G+E+ AVK+GGP+P +N+ L ++ KAK ++P D +E
Sbjct: 8 ANIKHKKERNDAAKGKIFTVIGRELAVAVKEGGPDPANNSRLRDIIAKAKANNMPNDTIE 67
Query: 141 RNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+A+ + G + YE YG GV+I+V+ LTD R+ A VR GG + P
Sbjct: 68 RGIKKAAGDAGSVNYETITYEGYGPNGVAIIVDTLTDNKNRTAANVRNAFTKGGGNVGTP 127
Query: 200 GSVMFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G V F F + +++ + + D D+L+ ++LDAGAED E E+D+ ++V
Sbjct: 128 GCVSFMFDKKGQIIIDKEECEMDPDELMMVSLDAGAEDFAE----EEDS--------FEV 175
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLEL----D 313
++ + ++ + L AG+P + G ++P T +E+ DE L K + +LLEL D
Sbjct: 176 ITGPEEFSSVREALEAAGVPM-VEAGVTMIPQTWVELTDED-SLKK--MNRLLELLDAED 231
Query: 314 DVDAVY 319
DV A Y
Sbjct: 232 DVQATY 237
>gi|402820439|ref|ZP_10870006.1| hypothetical protein IMCC14465_12400 [alpha proteobacterium
IMCC14465]
gi|402511182|gb|EJW21444.1| hypothetical protein IMCC14465_12400 [alpha proteobacterium
IMCC14465]
Length = 252
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 130/246 (52%), Gaps = 23/246 (9%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKGAQD K+AK++SR+ KE+ A K G P+P SN L + A+ ++PKD +ER
Sbjct: 10 IQHRKGAQDKKRAKVFSRLSKEITIAAKMGMPDPDSNPRLRTAINAARAQNMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK++++ G E + E YE +G GG+ ++VE LTD R+ VR V GG + + GSV
Sbjct: 70 IKKSADAGGENYEEVRYEGFGPGGIGVIVETLTDNRNRTAGDVRTVFTKSGGNLGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R V AD D + + A++AGAEDV + DDT ++++ +
Sbjct: 130 SFMFDRRGAVEYPGDVADADAVFEAAIEAGAEDV----ESSDDT--------HEILCAME 177
Query: 263 NYTDITTKLREA-----GIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDV 315
++ L A G P ++++ P I VD+E E ++ L +LDDV
Sbjct: 178 ELHNVAAALEGALDGLLGPP----PSAQIVWKPQNEISVDEETAEKVLRMMEALDDLDDV 233
Query: 316 DAVYTD 321
VY +
Sbjct: 234 QNVYAN 239
>gi|417003448|ref|ZP_11942511.1| DNA-binding regulatory protein, YebC/PmpR family [Anaerococcus
prevotii ACS-065-V-Col13]
gi|325478640|gb|EGC81752.1| DNA-binding regulatory protein, YebC/PmpR family [Anaerococcus
prevotii ACS-065-V-Col13]
Length = 240
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/248 (35%), Positives = 135/248 (54%), Gaps = 19/248 (7%)
Query: 78 RRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKD 137
+ SKI +KG++DAKK K++++ + + A K+GG NP N L +EKAK ++P D
Sbjct: 5 NKWSKIKNKKGSEDAKKGKIFTKHARNITVAAKEGGVNPDYNPALKTAIEKAKADNMPND 64
Query: 138 IVERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKM 196
++R IK+A+ + + F +YE YG GGV+I+V+ LTD R+ VR GG +
Sbjct: 65 NIDRAIKKAAGDDASDNFERIIYEGYGPGGVAIIVDCLTDNKNRTAPDVRHAFDKNGGNL 124
Query: 197 ADPGSVMFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERY 254
GSVMF F R +VN ++ D D+ + AL+AG EDV +D E Y
Sbjct: 125 GTDGSVMFMFDRKGDIIVNSEYKDF--DEFMMDALEAGCEDV-----------KDMGE-Y 170
Query: 255 YKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELN-KELIAKLLELD 313
++ ++ + D L+EAG E+ + S L I+VDDE + +LI L + D
Sbjct: 171 FEAITDVQAFNDANDNLKEAGYKVESADIS-YLAQNLIKVDDEDQKSKLTKLIDTLEDND 229
Query: 314 DVDAVYTD 321
DV VY++
Sbjct: 230 DVQEVYSN 237
>gi|296129639|ref|YP_003636889.1| hypothetical protein Cfla_1793 [Cellulomonas flavigena DSM 20109]
gi|296021454|gb|ADG74690.1| protein of unknown function DUF28 [Cellulomonas flavigena DSM
20109]
Length = 251
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 132/240 (55%), Gaps = 19/240 (7%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K DAK+ KL++++ K + A + GG +P N L ++KAK+ VP D ++R +KR
Sbjct: 13 KKAVIDAKRGKLFAKLIKNIEVAARTGGGDPAGNPTLFDAIQKAKKSSVPNDNIDRAVKR 72
Query: 146 ASEKGQEA----FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
S GQEA + +YE YG GGV+++VE LTD R+ + VR GG+MADPGS
Sbjct: 73 GS--GQEAGGADYQTIMYEGYGPGGVAVLVECLTDNRNRAASDVRVAFTRNGGQMADPGS 130
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
V + F R VV + D+D +++ L+AG E+V D E+ ++V+S +
Sbjct: 131 VSYIFSRKGVVIVPKEGTDEDAVMEAVLEAGGEEVT-----------DLGEQ-FEVLSEA 178
Query: 262 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ + T L+EAGI +++ + P T IEVD E LI L + DDV VY +
Sbjct: 179 TDLVPVRTALQEAGIEYDSAD-VVFWPATQIEVDAEGARKILRLIDALEDSDDVQNVYAN 237
>gi|237743343|ref|ZP_04573824.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
gi|336419935|ref|ZP_08600185.1| hypothetical protein HMPREF0401_02205 [Fusobacterium sp. 11_3_2]
gi|422936127|ref|ZP_16966705.1| glucose-1-phosphate adenylyltransferase [Fusobacterium nucleatum
subsp. animalis ATCC 51191]
gi|229433122|gb|EEO43334.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
gi|336162443|gb|EGN65409.1| hypothetical protein HMPREF0401_02205 [Fusobacterium sp. 11_3_2]
gi|339890870|gb|EGQ79934.1| glucose-1-phosphate adenylyltransferase [Fusobacterium nucleatum
subsp. animalis ATCC 51191]
Length = 249
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 136/247 (55%), Gaps = 19/247 (7%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RKGAQD K+AKL+++ G+E+ A K+GG +P N L +EKAK ++PKDI
Sbjct: 6 KWNNIQHRKGAQDKKRAKLFTKFGRELTIAAKEGGGDPNFNPRLRLAIEKAKAGNMPKDI 65
Query: 139 VERNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ER IK+ S + + F E YE YG G + +VE +TD R+ + +R G +
Sbjct: 66 LERAIKKGSGELEGVDFTEMRYEGYGPAGTAFIVEAVTDNKNRTASEIRMTFTRKDGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G+V + F++ ++ +K D D+ + AL+AGAED V EDD Y++V
Sbjct: 126 ADGAVSWMFKKKGIITVKAEGIDADEFMMAALEAGAED-----VEEDDG-------YFEV 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIA---KLLELDD 314
+ + + L+ AG +E S ++P T+E+ D +E K+++A L +LDD
Sbjct: 174 TTEYTEFQTVLENLKNAGYQYEEAEIS-MIPENTVEITD--LETAKKVMALYDALEDLDD 230
Query: 315 VDAVYTD 321
VY++
Sbjct: 231 SQNVYSN 237
>gi|336401543|ref|ZP_08582305.1| hypothetical protein HMPREF0404_01596 [Fusobacterium sp. 21_1A]
gi|423137525|ref|ZP_17125168.1| UPF0082 protein [Fusobacterium nucleatum subsp. animalis F0419]
gi|336160644|gb|EGN63676.1| hypothetical protein HMPREF0404_01596 [Fusobacterium sp. 21_1A]
gi|371959907|gb|EHO77578.1| UPF0082 protein [Fusobacterium nucleatum subsp. animalis F0419]
Length = 249
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 136/247 (55%), Gaps = 19/247 (7%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RKGAQD K+AKL+++ G+E+ A K+GG +P N L +EKAK ++PKDI
Sbjct: 6 KWNNIQHRKGAQDKKRAKLFTKFGRELTIAAKEGGGDPNFNPRLRLAIEKAKAGNMPKDI 65
Query: 139 VERNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ER IK+ S + + F E YE YG G + +VE +TD R+ + +R G +
Sbjct: 66 LERAIKKGSGELEGVDFTEMRYEGYGPAGTAFIVEAVTDNKNRTASEIRMTFTRKDGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G+V + F++ ++ +K D D+ + AL+AGAED V EDD Y++V
Sbjct: 126 ADGAVSWMFKKKGIITVKSEGIDADEFMMAALEAGAED-----VEEDDG-------YFEV 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIA---KLLELDD 314
+ + + L+ AG +E S ++P T+E+ D +E K+++A L +LDD
Sbjct: 174 TTEYTEFQTVLENLKNAGYQYEEAEIS-MIPENTVEITD--LETAKKVMALYDALEDLDD 230
Query: 315 VDAVYTD 321
VY++
Sbjct: 231 SQNVYSN 237
>gi|19704982|ref|NP_602477.1| hypothetical protein FN1661 [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|296329236|ref|ZP_06871737.1| glucose-1-phosphate adenylyltransferase [Fusobacterium nucleatum
subsp. nucleatum ATCC 23726]
gi|33517054|sp|Q8RIE0.1|Y1661_FUSNN RecName: Full=Probable transcriptional regulatory protein FN1661
gi|19712888|gb|AAL93776.1| Hypothetical cytosolic protein [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|296153592|gb|EFG94409.1| glucose-1-phosphate adenylyltransferase [Fusobacterium nucleatum
subsp. nucleatum ATCC 23726]
Length = 249
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 136/247 (55%), Gaps = 19/247 (7%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RKGAQD K+AKL+++ G+E+ A K+GG +P N L +EKAK ++PKDI
Sbjct: 6 KWNNIQHRKGAQDKKRAKLFTKFGRELTIAAKEGGGDPNFNPRLRLAIEKAKAGNMPKDI 65
Query: 139 VERNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ER IK+ S + + F E YE YG G + +VE +TD R+ + +R G +
Sbjct: 66 LERAIKKGSGELEGVDFTEMRYEGYGPAGTAFIVEAVTDNKNRTASEMRMTFTRKDGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G+V + F++ V+ +K D D+ + AL+AGAEDV EDD Y++V
Sbjct: 126 ADGAVSWMFKKKGVITVKAEGIDADEFMMAALEAGAEDVT-----EDDG-------YFEV 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIA---KLLELDD 314
+ + + L+ AG +E S ++P T+E+ D +E K+++A L +LDD
Sbjct: 174 TTEYTEFQTVLENLKNAGYQYEEAEIS-MIPENTVEITD--LETAKKVMALYDALEDLDD 230
Query: 315 VDAVYTD 321
VY++
Sbjct: 231 SQNVYSN 237
>gi|407804370|ref|ZP_11151194.1| hypothetical protein S7S_03430 [Alcanivorax sp. W11-5]
gi|407021663|gb|EKE33427.1| hypothetical protein S7S_03430 [Alcanivorax sp. W11-5]
Length = 246
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/245 (35%), Positives = 140/245 (57%), Gaps = 19/245 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDA++ K+++++ +E+ A + GGP P N L AV++KA ++ +D ++
Sbjct: 8 ANIKHRKAAQDARRGKIFTKLIREITVAARLGGPEPNDNPRLRAVVDKALTANMTRDTID 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IKR A ++++ YE YG GGV+++VE +TD + R+V+ VR GG +
Sbjct: 68 RAIKRGIGSDDGASMDEISYEGYGPGGVAVLVETMTDNVNRTVSDVRHAFTKHGGNLGTS 127
Query: 200 GSVMFKF-RRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
GSV + F +R ++ T D+D L++ AL+AGAEDV V++D + V+
Sbjct: 128 GSVAYLFTKRGEILFEPGT--DEDALMEAALEAGAEDV---QVDDDGS--------MTVI 174
Query: 259 STSDN-YTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
+T+D + D+ L+ AG FE N + P T EVD + E ++I L +LDDV
Sbjct: 175 TTADRAFGDVVDALKAAG--FEPANAEVTMHPATDAEVDGDTAEKVMKMIDHLEDLDDVQ 232
Query: 317 AVYTD 321
VYT+
Sbjct: 233 NVYTN 237
>gi|424779954|ref|ZP_18206840.1| hypothetical protein C683_0189 [Catellicoccus marimammalium
M35/04/3]
gi|422843493|gb|EKU27930.1| hypothetical protein C683_0189 [Catellicoccus marimammalium
M35/04/3]
Length = 241
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 140/244 (57%), Gaps = 17/244 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I GRK AQDAK+ K++ ++ +E+ A K GGP+PT+N+ L V++KA+ ++PKD ++
Sbjct: 8 NNIKGRKSAQDAKRGKIFQKLSREIYVAAKAGGPDPTANSSLRLVMDKARAENMPKDNIQ 67
Query: 141 RNIKRASEKGQ-EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+A+E G + ++E +E YG GV+I+V LTD R+ VR GG + +
Sbjct: 68 RAIKKATESGAGDHYMELTFEGYGPKGVAILVHTLTDNKNRTQTNVRVAFTRNGGSVGES 127
Query: 200 GSVMFKFRRARVVNIKFTD--ADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV ++F R + I+ D+D++L+ LDAGAED++ ++ +++
Sbjct: 128 GSVAYQFDRKGYIAIEREGLALDEDEMLEKVLDAGAEDLV------------TSDEVFEI 175
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ +++T + L + + ++P TT+ ++ +E + L+ KL + +DV
Sbjct: 176 YTAPEDFTSVRDALEKEFTLARAE--LTMIPQTTVPLEGADLEQLERLVDKLEDDEDVSE 233
Query: 318 VYTD 321
V+T+
Sbjct: 234 VFTN 237
>gi|116490816|ref|YP_810360.1| hypothetical protein OEOE_0768 [Oenococcus oeni PSU-1]
gi|290890261|ref|ZP_06553340.1| hypothetical protein AWRIB429_0730 [Oenococcus oeni AWRIB429]
gi|419759030|ref|ZP_14285342.1| hypothetical protein AWRIB304_1599 [Oenococcus oeni AWRIB304]
gi|419856746|ref|ZP_14379466.1| hypothetical protein AWRIB202_540 [Oenococcus oeni AWRIB202]
gi|419858734|ref|ZP_14381394.1| hypothetical protein AWRIB129_769 [Oenococcus oeni DSM 20252 =
AWRIB129]
gi|421185222|ref|ZP_15642633.1| hypothetical protein AWRIB318_1595 [Oenococcus oeni AWRIB318]
gi|421187758|ref|ZP_15645102.1| hypothetical protein AWRIB419_521 [Oenococcus oeni AWRIB419]
gi|421189492|ref|ZP_15646806.1| hypothetical protein AWRIB422_538 [Oenococcus oeni AWRIB422]
gi|421191052|ref|ZP_15648336.1| hypothetical protein AWRIB548_373 [Oenococcus oeni AWRIB548]
gi|421194078|ref|ZP_15651313.1| hypothetical protein AWRIB553_1735 [Oenococcus oeni AWRIB553]
gi|421195534|ref|ZP_15652742.1| hypothetical protein AWRIB568_1501 [Oenococcus oeni AWRIB568]
gi|421197645|ref|ZP_15654820.1| hypothetical protein AWRIB576_1832 [Oenococcus oeni AWRIB576]
gi|122277002|sp|Q04FS7.1|Y768_OENOB RecName: Full=Probable transcriptional regulatory protein OEOE_0768
gi|116091541|gb|ABJ56695.1| hypothetical protein OEOE_0768 [Oenococcus oeni PSU-1]
gi|290480047|gb|EFD88692.1| hypothetical protein AWRIB429_0730 [Oenococcus oeni AWRIB429]
gi|399904485|gb|EJN91941.1| hypothetical protein AWRIB304_1599 [Oenococcus oeni AWRIB304]
gi|399964403|gb|EJN99044.1| hypothetical protein AWRIB318_1595 [Oenococcus oeni AWRIB318]
gi|399967004|gb|EJO01503.1| hypothetical protein AWRIB419_521 [Oenococcus oeni AWRIB419]
gi|399969696|gb|EJO04018.1| hypothetical protein AWRIB553_1735 [Oenococcus oeni AWRIB553]
gi|399972582|gb|EJO06781.1| hypothetical protein AWRIB422_538 [Oenococcus oeni AWRIB422]
gi|399973748|gb|EJO07913.1| hypothetical protein AWRIB548_373 [Oenococcus oeni AWRIB548]
gi|399975254|gb|EJO09322.1| hypothetical protein AWRIB576_1832 [Oenococcus oeni AWRIB576]
gi|399975959|gb|EJO09994.1| hypothetical protein AWRIB568_1501 [Oenococcus oeni AWRIB568]
gi|410497891|gb|EKP89359.1| hypothetical protein AWRIB129_769 [Oenococcus oeni DSM 20252 =
AWRIB129]
gi|410499197|gb|EKP90633.1| hypothetical protein AWRIB202_540 [Oenococcus oeni AWRIB202]
Length = 240
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/241 (34%), Positives = 134/241 (55%), Gaps = 16/241 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ ++ A K GG +P++N L V++KAK ++PKD V+R
Sbjct: 10 IQGRKNAQDAKRGKIFQKISHDLYVAAKAGGADPSANASLRLVMDKAKAANMPKDNVQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ +A+ G F E YE Y GG++++VE TD I R+V+ VR GG + GSV
Sbjct: 70 LDKATGAGDVKFEEATYEGYAPGGIAVLVETSTDNINRTVSNVRNSFNHHGGSLGTSGSV 129
Query: 203 MFKF-RRARVVNIKFTDAD--KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
F+F RR V + + D +DQ+++ A++AGAEDV DD +++ S
Sbjct: 130 SFQFDRRGHFVIDRQSHPDITEDQVMEDAIEAGAEDV----QTSDDA--------FEIFS 177
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
++ + L + G ++ ++P +EV + E ++LI +L + DDV AVY
Sbjct: 178 QPADFAAVEGALTDKGYDL-AESEITMIPQNPVEVPEADQEKFEKLIDELEDNDDVLAVY 236
Query: 320 T 320
T
Sbjct: 237 T 237
>gi|312113458|ref|YP_004011054.1| hypothetical protein Rvan_0679 [Rhodomicrobium vannielii ATCC
17100]
gi|311218587|gb|ADP69955.1| protein of unknown function DUF28 [Rhodomicrobium vannielii ATCC
17100]
Length = 248
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 129/236 (54%), Gaps = 13/236 (5%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
RKGAQD+K++K++S+ +E+ +A K G P+P N L + A+ ++PKD +ER IK+
Sbjct: 13 RKGAQDSKRSKMFSKFAREITAAAKIGLPDPAMNPRLRTAILAARAQNMPKDNIERAIKK 72
Query: 146 ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 205
+ E G +IE YE + GGV I+VE LTD R+ VR + GG + + G+V F
Sbjct: 73 SQEAGGADYIEVRYEGFAPGGVGIIVEALTDNRNRTAGEVRSLFTKYGGNLGETGAVSFS 132
Query: 206 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 265
F R + + +++L+ A++AGA+D E AE ++ + +T D ++
Sbjct: 133 FDRVGEIEYPLSAGSAEEMLEAAIEAGADDC-----------ESDAEAHW-LTTTIDAFS 180
Query: 266 DITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
++ +L + P ++ P T+EVD+E E +LI L + DDV VY +
Sbjct: 181 EVQAELEKKFGPAKS-AAIGWRPQNTVEVDEEKGEKLLKLIDSLEDSDDVQKVYAN 235
>gi|160902273|ref|YP_001567854.1| hypothetical protein Pmob_0807 [Petrotoga mobilis SJ95]
gi|189040610|sp|A9BHC2.1|Y807_PETMO RecName: Full=Probable transcriptional regulatory protein Pmob_0807
gi|160359917|gb|ABX31531.1| protein of unknown function DUF28 [Petrotoga mobilis SJ95]
Length = 251
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 143/243 (58%), Gaps = 16/243 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RKGAQDAK++++++++ +E+ A ++GG +P SN L +E AK ++PKD
Sbjct: 6 KWANIKHRKGAQDAKRSQMFTKLIRELTIAAREGGGDPESNPRLRTAVENAKAANMPKDK 65
Query: 139 VERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+E IK+ + + + + ++ YE YG GGV++++ V+TD R+ VR V+ GG +A
Sbjct: 66 IESAIKKGTGELEGEELTEIMYEAYGPGGVALLISVVTDNKNRTAQEVRHVLSKWGGALA 125
Query: 198 DPGSVMFKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
+ GSV + F R ++ I + D D+L+ +A++AGAED+ +++TD +
Sbjct: 126 ESGSVSWNFERKGLITIPKEEVEDIDELMLLAVEAGAEDL------DENTDP------LE 173
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
+++ +N T + L+EAG + LP TT+++ DE E +L+ L ++DDV
Sbjct: 174 IITAPENLTQVRNALKEAG--YTVSEKLTFLPKTTVKLSDEDAEKLLKLLNALDDMDDVQ 231
Query: 317 AVY 319
V+
Sbjct: 232 EVF 234
>gi|260587636|ref|ZP_05853549.1| glucose-1-phosphate adenylyltransferase [Blautia hansenii DSM
20583]
gi|331084074|ref|ZP_08333181.1| hypothetical protein HMPREF0992_02105 [Lachnospiraceae bacterium
6_1_63FAA]
gi|260541901|gb|EEX22470.1| glucose-1-phosphate adenylyltransferase [Blautia hansenii DSM
20583]
gi|330402436|gb|EGG82006.1| hypothetical protein HMPREF0992_02105 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 242
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 132/239 (55%), Gaps = 16/239 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +K DAKK K+++ +G+E++ AVK+GGP+P +N+ L V+ KAK ++P D
Sbjct: 6 KFANIKHKKEKNDAKKGKIFTVIGREIVVAVKEGGPDPANNSKLRDVIAKAKANNMPNDT 65
Query: 139 VERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ER IK+A+ + + F YE YG GV+I+VE LTD R+ VR G +
Sbjct: 66 IERGIKKAAGDSNADNFEVLTYEGYGPSGVAIIVETLTDNKNRTAGNVRSAFTKGNGNIG 125
Query: 198 DPGSVMFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
PGSV F F + +++ + + D D L+ IALDAGAED E EDD+ +
Sbjct: 126 TPGSVSFMFDKKGQIIIDKEECEMDADDLMMIALDAGAEDFAE----EDDS--------F 173
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDD 314
+V++ D+++ + L + GIP + ++P + + DE N + LLE DD
Sbjct: 174 EVLTAPDDFSAVREALEKEGIPM-VEAQVAMIPQNYVTLSDEQDIKNLQKTLDLLENDD 231
>gi|419759890|ref|ZP_14286175.1| hypothetical protein H17ap60334_03130 [Thermosipho africanus
H17ap60334]
gi|407514929|gb|EKF49715.1| hypothetical protein H17ap60334_03130 [Thermosipho africanus
H17ap60334]
Length = 252
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 141/245 (57%), Gaps = 17/245 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RK AQDAKK+K+++++ +E+I A K+GG +P +N L AVLE+A+ ++PKD
Sbjct: 6 KWANIKHRKAAQDAKKSKIFTKLIREIIVAAKEGGGDPETNPRLRAVLERARAANMPKDT 65
Query: 139 VERNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+E++IK+ + + + + E +YE Y GV++ + +TD R+ +R ++ GG +A
Sbjct: 66 IEKSIKKGTGELEGVDYQEIIYEAYAPAGVALYIYAMTDNKNRTAQELRHLLSKHGGSLA 125
Query: 198 DPGSVMFKFRRARVVNI-KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
+ GSV + F R ++ I K AD ++ +A+DAGAED+I EDD +
Sbjct: 126 ESGSVAWLFERKGIIEIPKEKIADFEEFAMVAIDAGAEDII-----EDDP--------IQ 172
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
V++ D T++ KL E G FE + +P T++V E +L++ L + DDV
Sbjct: 173 VITAPDMLTEVKDKLAENG--FEGEAKVTFIPKNTVKVTGADAEKVLKLVSVLEDNDDVQ 230
Query: 317 AVYTD 321
VY +
Sbjct: 231 EVYAN 235
>gi|346224890|ref|ZP_08846032.1| hypothetical protein AtheD1_06986 [Anaerophaga thermohalophila DSM
12881]
Length = 250
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/241 (34%), Positives = 135/241 (56%), Gaps = 16/241 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKGAQDAK+AK+++R+ KE+ AVK+GGP+P +N L ++ A+ +++PKD +
Sbjct: 8 ANIKHRKGAQDAKRAKMFTRITKEIQIAVKEGGPDPETNPRLRLAVQNARSVNMPKDNIN 67
Query: 141 RNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
R I +ASE G E+ E +E YG GGV++ +E +TD R+V AVR + GG + G
Sbjct: 68 RAIAKASEVGSESLQEITFEGYGPGGVAVFLECMTDNNNRTVGAVRSIFNKRGGSLGTNG 127
Query: 201 SVMFKFRRARVVN-IKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
S+ F F R V +K D D ++L +DAGA+++ + E V +
Sbjct: 128 SLSFLFDRKGVFQVVKKDDMDLEELELELIDAGAQEI------------EMDEELIVVTT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+++ + KL E G+ E +N S + +P + E+D E + +I + + +DV V
Sbjct: 176 EMEDFGAVQKKLDELGV--EVENASLQRIPNSYKELDLETAKKFLRMIDEFEDNEDVQNV 233
Query: 319 Y 319
Y
Sbjct: 234 Y 234
>gi|225181977|ref|ZP_03735410.1| protein of unknown function DUF28 [Dethiobacter alkaliphilus AHT 1]
gi|225167339|gb|EEG76157.1| protein of unknown function DUF28 [Dethiobacter alkaliphilus AHT 1]
Length = 251
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 133/243 (54%), Gaps = 15/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK DA+K K+++++ KE+++AV++GG +P +N L L+KA+ +++P D ++
Sbjct: 8 ANIKHRKARVDAQKGKVFTKISKEIMAAVRQGGGDPNNNFRLRLALQKARSVNMPNDNIQ 67
Query: 141 RNIKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I++ A E F E +YE YG G ++++E+LTD R+ +R + GG + +
Sbjct: 68 RAIQKGAGELEGTNFEEIIYEGYGPAGTAVMLEILTDNRNRTAGEIRHIFSKSGGSLGET 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
G V + F R + + D+D+L+ +ALDAGAED + E +++ +
Sbjct: 128 GCVAWMFNRRGYLEVSKEGHDEDELMLLALDAGAEDF------------EAGENAFEIYT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDD-EAMELNKELIAKLLELDDVDAV 318
D++ + K+ GI F + ++P TT+EV D E + LI L + DDV
Sbjct: 176 RPDDFEAVKEKMEAEGISF-GEAAITMIPETTVEVPDVEGAKKALALIEALEDHDDVQNA 234
Query: 319 YTD 321
YT+
Sbjct: 235 YTN 237
>gi|222099181|ref|YP_002533749.1| hypothetical protein CTN_0207 [Thermotoga neapolitana DSM 4359]
gi|221571571|gb|ACM22383.1| Hypothetical Protein CTN_0207 [Thermotoga neapolitana DSM 4359]
Length = 254
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 141/245 (57%), Gaps = 20/245 (8%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAKK+K+++++ +E+I A ++GG NP +N L A +E+A+ ++PK+ +E
Sbjct: 9 ANIKHRKMAQDAKKSKIFTKLIREIIVAAREGGGNPETNPRLRAAIERARAENMPKENIE 68
Query: 141 RNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
+ IKR + + + + E VYE Y GGV++ + LTD R+ +R + GG +A+
Sbjct: 69 KAIKRGTGELEGVDYQEVVYEGYAPGGVAVYIRALTDNKNRTAQELRHLFSKHGGSLAES 128
Query: 200 GSVMFKFRRARVVNI-KFTDADKDQLLDIALDAGAEDV--IEPPVNEDDTDEDRAERYYK 256
GSV + F R V+ I K D ++L+ +A+DAGAED+ E P+ +
Sbjct: 129 GSVSWIFERKGVIEIAKDKVKDLEELMMLAIDAGAEDIKDTEDPI--------------Q 174
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
+++ ++ +++ +L EAG +E D +P T+ V + E EL+ L ++DDV
Sbjct: 175 IITAPEDLSEVKRQLEEAG--YEVDAKVTFIPKNTVRVTGKDAEKVLELLNALEDMDDVQ 232
Query: 317 AVYTD 321
VY++
Sbjct: 233 EVYSN 237
>gi|300856550|ref|YP_003781534.1| hypothetical protein CLJU_c33870 [Clostridium ljungdahlii DSM
13528]
gi|300436665|gb|ADK16432.1| conserved hypothetical protein [Clostridium ljungdahlii DSM 13528]
Length = 246
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/239 (35%), Positives = 135/239 (56%), Gaps = 15/239 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I +KG DAK+ K+++++GKE+ A K+GG NP SN+ L V+ KAK ++P+D V+R
Sbjct: 10 IQAKKGKADAKRGKIFTKIGKELAIAAKEGGSNPDSNSKLRDVIAKAKANNMPQDTVQRA 69
Query: 143 IKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+ S + E++ YE YG GV+++V+ LTD RS + VR GG + G
Sbjct: 70 IKKGSGELTGVNYEEISYEGYGPSGVAMIVKALTDNKNRSASNVRAAFSRHGGNLGANGC 129
Query: 202 VMFKFR-RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
V + F+ + ++V + D D+D+++ LDAGAED I E ++V++T
Sbjct: 130 VGWMFQAKGQIVIERKEDMDEDEIMMQVLDAGAEDFIAE------------EEVFEVITT 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+++ + KL E G F + + + ++P T+ VD E + LI KL + DDV VY
Sbjct: 178 VEDFGTVREKLEEQGFEFLSADIT-MIPDNTVAVDMETAGKVQRLIDKLEDDDDVQDVY 235
>gi|408356396|ref|YP_006844927.1| hypothetical protein AXY_10330 [Amphibacillus xylanus NBRC 15112]
gi|407727167|dbj|BAM47165.1| hypothetical protein AXY_10330 [Amphibacillus xylanus NBRC 15112]
Length = 240
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 135/240 (56%), Gaps = 16/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RK AQDAK+ K++ + K++ A K+GG +P +N L ++KAK ++P + +ERN
Sbjct: 10 IQRRKNAQDAKRGKIFMKAAKDIYIAAKEGGADPETNPALRLAIDKAKAQNMPNENIERN 69
Query: 143 IKRASEK-GQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+A+ ++ E +YE YG GG +++VE+LTD RS A VR GG + + G
Sbjct: 70 IKKATGTLDGVSYEEVIYEGYGPGGSAVMVELLTDNKNRSAAEVRHAFSKSGGNLGENGC 129
Query: 202 VMFKFRRA--RVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
V F F R V+ TDAD+D ++ A++AGAE++ + TDE Y++ +
Sbjct: 130 VSFLFNRKGYLVIERSKTDADEDTVMLAAIEAGAEEM-------ETTDE-----VYEIYT 177
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+N+ ++ L G F+T + L+P T ++ ++ + LI +L +LDDV V+
Sbjct: 178 EPENFKEVRDALANEGFEFDTAELT-LIPTTYTQLSEDDQAKMERLIERLEDLDDVQDVH 236
>gi|217077314|ref|YP_002335032.1| hypothetical protein THA_1246 [Thermosipho africanus TCF52B]
gi|226696296|sp|B7IHX7.1|Y1246_THEAB RecName: Full=Probable transcriptional regulatory protein THA_1246
gi|217037169|gb|ACJ75691.1| conserved hypothetical protein [Thermosipho africanus TCF52B]
Length = 252
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 141/245 (57%), Gaps = 17/245 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RK AQDAKK+K+++++ +E+I A K+GG +P +N L AVLE+A+ ++PKD
Sbjct: 6 KWANIKHRKAAQDAKKSKIFTKLIREIIVAAKEGGGDPETNPRLRAVLERARAANMPKDT 65
Query: 139 VERNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+E++IK+ + + + + E +YE Y GV++ + +TD R+ +R ++ GG +A
Sbjct: 66 IEKSIKKGTGELEGVDYQEIIYEAYAPAGVALYIYAMTDNKNRTAQELRHLLSKHGGSLA 125
Query: 198 DPGSVMFKFRRARVVNI-KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
+ GSV + F R ++ I K AD ++ +A+DAGAED+I EDD +
Sbjct: 126 ESGSVAWLFERKGIIEIPKEKIADFEEFAMVAIDAGAEDII-----EDDP--------IQ 172
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
V++ D T++ KL E G FE + +P T++V E +L++ L + DDV
Sbjct: 173 VITAPDMLTEVKDKLAENG--FEGEAKVTFIPKNTVKVTGADAEKVLKLVSVLEDNDDVQ 230
Query: 317 AVYTD 321
VY +
Sbjct: 231 EVYAN 235
>gi|149914396|ref|ZP_01902927.1| hypothetical protein RAZWK3B_20386 [Roseobacter sp. AzwK-3b]
gi|149811915|gb|EDM71748.1| hypothetical protein RAZWK3B_20386 [Roseobacter sp. AzwK-3b]
Length = 249
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 127/241 (52%), Gaps = 13/241 (5%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKG QDA ++KL+S++ KE+ A K G P+P N L +++AK + VPKD++E
Sbjct: 8 ANIQHRKGRQDAARSKLFSKLSKEITVAAKMGDPDPEKNPRLRMAVKEAKAVSVPKDVIE 67
Query: 141 RNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
R IK++ + + E YE YG GGV+++VE +TD R+ + VR GG + + G
Sbjct: 68 RAIKKSQAGEGDDYEEIRYEGYGPGGVAVIVEAMTDNRNRTASNVRSTFTKHGGNLGETG 127
Query: 201 SVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
SV F F R ++ D D ++ A++AGAEDV + +E + V
Sbjct: 128 SVAFMFERKGEISYPAEAGDADTVMMAAIEAGAEDV------------ESSEEGHTVWCA 175
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ D++T L EA + P TT E+D E M+ +L+ L + DDV V T
Sbjct: 176 DTDLNDVSTAL-EAELGESASTRLAWRPATTTELDLEGMQKLMKLVDALEDDDDVQRVTT 234
Query: 321 D 321
+
Sbjct: 235 N 235
>gi|320352801|ref|YP_004194140.1| hypothetical protein Despr_0673 [Desulfobulbus propionicus DSM
2032]
gi|320121303|gb|ADW16849.1| protein of unknown function DUF28 [Desulfobulbus propionicus DSM
2032]
Length = 249
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 140/243 (57%), Gaps = 15/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
S I +KGA DAK+ K+++++ KE+ A K GG +P N L + + AK ++PK+ ++
Sbjct: 8 STIKRKKGANDAKRGKIFTKLIKEITIAAKMGGGDPEGNPRLRSAITVAKSENMPKENID 67
Query: 141 RNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+ + + G + E +YE YG GGV+++VE +TD R+VA +R GG + +
Sbjct: 68 RAIKKGTGDLGGAVYEEILYEGYGPGGVAVLVETMTDNKNRTVADIRHFFAKSGGNLGES 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
G V + F + +++ +++QL+D+AL+AGAEDV+E E+D+ +++++
Sbjct: 128 GCVAWMFDKKGTISVDKAGVNEEQLMDVALEAGAEDVVE----EEDS--------FQIIT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDE-AMELNKELIAKLLELDDVDAV 318
+++ D+ +L + I F S ++P TIEV +E A L+ L + DDV V
Sbjct: 176 APESFNDVVDQLEKGKIKFAEATLS-MVPKNTIEVTEEKAARSLLRLLDNLEDHDDVQKV 234
Query: 319 YTD 321
+ +
Sbjct: 235 HAN 237
>gi|386775359|ref|ZP_10097737.1| hypothetical protein BparL_16320 [Brachybacterium paraconglomeratum
LC44]
Length = 252
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 130/238 (54%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K DAK+ KL++++ K + A + GGP+P+ N L ++KAK+ VP D ++R +KR
Sbjct: 13 KKAVIDAKRGKLFAKLVKNIEVAARMGGPDPSGNPTLYDAIQKAKKTSVPNDNIDRAVKR 72
Query: 146 ASEKGQEA--FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
+ +YE Y GGV+++VE LTD R+V+ VR GG MAD GSV
Sbjct: 73 GGGLDGGGVDYETLMYEGYAPGGVAVLVECLTDNKNRAVSEVRLAFNRNGGNMADSGSVS 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R VV + + +D LL++ LDAGAE++ D E ++++S + +
Sbjct: 133 YLFERRGVVTVAKGENTEDDLLEVVLDAGAEEI-----------NDEGET-FEILSEATD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ T L+EAGI +E+ ++ +P VD E + LI L + DDV AVY++
Sbjct: 181 VVAVRTALQEAGIDYESAE-AQFVPTMRTPVDLEGAQKALRLIDALEDSDDVQAVYSN 237
>gi|237742690|ref|ZP_04573171.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
gi|294784785|ref|ZP_06750073.1| conserved hypothetical protein [Fusobacterium sp. 3_1_27]
gi|229430338|gb|EEO40550.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
gi|294486499|gb|EFG33861.1| conserved hypothetical protein [Fusobacterium sp. 3_1_27]
Length = 249
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 136/247 (55%), Gaps = 19/247 (7%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RKGAQD K+AKL+++ G+E+ A K+GG +P N L +EKAK ++PKDI
Sbjct: 6 KWNNIQHRKGAQDKKRAKLFTKFGRELTIAAKEGGSDPNFNPRLRLAIEKAKAGNMPKDI 65
Query: 139 VERNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ER IK+ S + + F E YE YG G + +VE +TD R+ + +R G +
Sbjct: 66 LERAIKKGSGELEGVDFTEMKYEGYGPAGTAFIVEAVTDNKNRTASEMRMTFTRKDGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G+V + F++ ++ +K D D+ + AL+AGAED + EDD Y++V
Sbjct: 126 ADGAVSWMFKKKGIITVKAEGIDADEFMMAALEAGAED-----ITEDDG-------YFEV 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIA---KLLELDD 314
+ + + L+ AG +E S ++P T+E+ D +E K+++A L +LDD
Sbjct: 174 TTEYTEFQTVLENLKNAGYQYEEAEIS-MIPENTVEITD--LETAKKVMALYDALEDLDD 230
Query: 315 VDAVYTD 321
VY++
Sbjct: 231 SQNVYSN 237
>gi|260495037|ref|ZP_05815166.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
gi|260197480|gb|EEW94998.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
Length = 249
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 136/247 (55%), Gaps = 19/247 (7%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RKGAQD K+AKL+++ G+E+ A K+GG +P N L +EKAK ++PKDI
Sbjct: 6 KWNNIQHRKGAQDKKRAKLFTKFGRELTIAAKEGGGDPNFNPRLRLAIEKAKAGNMPKDI 65
Query: 139 VERNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ER IK+ S + + F E YE YG G + +VE +TD R+ + +R G +
Sbjct: 66 LERAIKKGSGELEGVDFTEMRYEGYGPAGTAFIVEAVTDNKNRTASEIRMTFTRKDGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G+V + F++ ++ +K D D+ + AL+AGAED V EDD Y+++
Sbjct: 126 ADGAVSWMFKKKGIITVKSEGIDADEFMMAALEAGAED-----VEEDDG-------YFEI 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIA---KLLELDD 314
+ + + L+ AG +E S ++P T+E+ D +E K+++A L +LDD
Sbjct: 174 TTEYTEFQTVLENLKNAGYQYEEAEIS-MIPENTVEITD--LETAKKVMALYDALEDLDD 230
Query: 315 VDAVYTD 321
VY++
Sbjct: 231 SQNVYSN 237
>gi|34763880|ref|ZP_00144784.1| Hypothetical Cytosolic Protein [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
gi|421144841|ref|ZP_15604745.1| hypothetical protein A447_03163 [Fusobacterium nucleatum subsp.
fusiforme ATCC 51190]
gi|27886343|gb|EAA23614.1| Hypothetical Cytosolic Protein [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
gi|395488733|gb|EJG09584.1| hypothetical protein A447_03163 [Fusobacterium nucleatum subsp.
fusiforme ATCC 51190]
Length = 249
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 136/247 (55%), Gaps = 19/247 (7%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RKGAQD K+AKL+++ G+E+ A K+GG +P N L +EKAK ++PKDI
Sbjct: 6 KWNNIQHRKGAQDKKRAKLFTKFGRELTIAAKEGGSDPNFNPRLRLAIEKAKAGNMPKDI 65
Query: 139 VERNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ER IK+ S + + F E YE YG G + +VE +TD R+ + +R G +
Sbjct: 66 LERAIKKGSGELEGVDFTEMRYEGYGPAGTAFIVEAVTDNKNRTASEMRMTFTRKDGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G+V + F++ ++ +K D D+ + AL+AGAED + EDD Y++V
Sbjct: 126 ADGAVSWMFKKKGIITVKAEGIDADEFMMAALEAGAED-----ITEDDG-------YFEV 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIA---KLLELDD 314
+ + + L+ AG +E S ++P T+E+ D +E K+++A L +LDD
Sbjct: 174 TTEYTEFQTVLENLKNAGYQYEEAEIS-MIPENTVEITD--LETAKKVMALYDALEDLDD 230
Query: 315 VDAVYTD 321
VY++
Sbjct: 231 SQNVYSN 237
>gi|334881995|emb|CCB82940.1| UPF0082 protein lp_2253 [Lactobacillus pentosus MP-10]
gi|339639197|emb|CCC18428.1| UPF0082 protein lp_2253 [Lactobacillus pentosus IG1]
Length = 242
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 129/240 (53%), Gaps = 17/240 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ AVK GGP+P SN L V++KAK ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKVFQKISRELYMAVKAGGPDPDSNAQLRLVMDKAKAANMPKDNIKRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ + S G E + E YE YG GG++++V LTD R+ AAVR GG +A G+V
Sbjct: 70 VDKGSGSGAENYEEVTYEGYGPGGIAVLVHALTDNKNRTAAAVRSAFTHHGGALAATGAV 129
Query: 203 MFKFRRARVVNIKFTDADKDQ---LLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
+ F R + I D D D+ L+D+ LDAG +D+ ++ +++ +
Sbjct: 130 SYMFDRKGYIVISREDLDTDEDTMLMDV-LDAGGDDL------------QSSDEAFEIYT 176
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ L +G ET + ++P +V + +E + +I +L + DDV VY
Sbjct: 177 DPKQLAAVRDALEASGYKLETAELT-MIPENLTDVPADKVEKLQHMIDELEDNDDVSEVY 235
>gi|329945623|ref|ZP_08293356.1| DNA-binding regulatory protein, YebC/PmpR family [Actinomyces sp.
oral taxon 170 str. F0386]
gi|328528626|gb|EGF55591.1| DNA-binding regulatory protein, YebC/PmpR family [Actinomyces sp.
oral taxon 170 str. F0386]
Length = 254
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/238 (37%), Positives = 128/238 (53%), Gaps = 16/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++R+ K + A + GG +PT N L ++KAK+ VP D + R +KR
Sbjct: 13 KKAAIDAKRGKLFARLIKNIEVAARTGGGDPTGNPTLFDAIQKAKKNSVPADNITRAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S E G + +YE YG GGV+ +VE LTD R+ + VR GG +ADPGSV
Sbjct: 73 GSGEEAGGADWQTIMYEGYGPGGVAFLVECLTDNRNRAASDVRVAFSRNGGNLADPGSVA 132
Query: 204 FKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
+ F R VV + TD D+D +L LDAGAE+V ED E +++ S
Sbjct: 133 YNFTRKGVVEVAKTDGVDEDSILMAVLDAGAEEV-----------EDMGES-FEIYSEPG 180
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ + T L EAG+ +++ + + T +EVD + LI L + DDV VYT
Sbjct: 181 DIVAVRTALTEAGMDYDSAE-VQFVAGTKVEVDVDGARKVFRLIDALEDSDDVQNVYT 237
>gi|218133601|ref|ZP_03462405.1| hypothetical protein BACPEC_01470 [[Bacteroides] pectinophilus ATCC
43243]
gi|217990976|gb|EEC56982.1| DNA-binding regulatory protein, YebC/PmpR family [[Bacteroides]
pectinophilus ATCC 43243]
Length = 248
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 137/243 (56%), Gaps = 18/243 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ IA +K A DA K K+++R+GKE++ AVK+GGP+ +N+ L V+ KAK ++P D +E
Sbjct: 8 ANIAHKKAANDAAKGKIFTRIGKEIMVAVKEGGPDVNNNSKLRTVVAKAKANNMPNDTIE 67
Query: 141 RNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
R IK+A+ + VYE YG G +I+VE LTD R+ + +R GG + PG
Sbjct: 68 RAIKKAAGSDASNYESVVYEGYGPSGSAIIVEALTDNRNRAASNIRSAFTKGGGSIGTPG 127
Query: 201 SVMFKF--RRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
V F F + +V+ + D D D L+ IALDAGA+D E EDD+ +++
Sbjct: 128 CVSFMFDDKGLIIVSKEECDMDADDLMMIALDAGADDFSE----EDDS--------FEIT 175
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELLPITTIEV--DDEAMELNKELIAKLLELDDVD 316
+ D++ + L E IP + ++ +P +E+ +++ ++N+ L+ L E DDV
Sbjct: 176 TAPDDFETVRQALEEQKIPMASAEVTK-IPQNYVELTSEEDIKKMNRILML-LDEDDDVQ 233
Query: 317 AVY 319
VY
Sbjct: 234 NVY 236
>gi|254428271|ref|ZP_05041978.1| conserved hypothetical protein TIGR01033 [Alcanivorax sp. DG881]
gi|196194440|gb|EDX89399.1| conserved hypothetical protein TIGR01033 [Alcanivorax sp. DG881]
Length = 248
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 139/243 (57%), Gaps = 15/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAK+ K+++++ +E+ A K GG P N L A ++KA ++ +D ++
Sbjct: 8 ANIKHRKAAQDAKRGKIFTKLIRELTVAAKMGGGEPNDNPRLRAAIDKALGQNMTRDTID 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R +KR + + ++++ YE YG GGV+++VE +TD + R+VA VR G +
Sbjct: 68 RAVKRGAGGDDDGNMDEITYEGYGKGGVAVLVETMTDNVNRTVAEVRHAFSKFAGNLGTS 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV F F + + + + D+++L+++AL+AGAEDV E+ + + V +
Sbjct: 128 GSVAFLFTKRGEIFFE-SGVDEEKLMEVALEAGAEDV-----------EEVGDDGFVVTT 175
Query: 260 TSD-NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
T D ++ ++ LREAG+ F + + P T E+D + E +++I L +LDDV V
Sbjct: 176 TPDKSFGEVVDALREAGLEF-AEAEVTMHPSTEAEMDADTAETVQKMIDMLEDLDDVQNV 234
Query: 319 YTD 321
YT+
Sbjct: 235 YTN 237
>gi|170723162|ref|YP_001750850.1| hypothetical protein PputW619_4001 [Pseudomonas putida W619]
gi|169761165|gb|ACA74481.1| protein of unknown function DUF28 [Pseudomonas putida W619]
Length = 248
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 135/242 (55%), Gaps = 14/242 (5%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK QDAK+ K++++ +E+ A K+GG +P SN L L+KA ++ +DI++
Sbjct: 8 ANIKHRKERQDAKRGKIFTKWIRELTVAAKQGGGDPASNPRLRLALDKALGANMSRDIID 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R + R + + +E++ YE YG GGV+I+VE +TD R+ AAVR CGG +
Sbjct: 68 RAVARGAGTNESDNVEELSYEGYGPGGVAIMVEAMTDNRNRTAAAVRHAFTKCGGNLGTD 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F R ++ D+D L++ A++A A+DV+ NED + ++V +
Sbjct: 128 GSVAYLFERKGQISFA-PGVDEDALMEAAMEADADDVV---ANEDGS--------FEVFT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ +++ + L EAG D + P T+ E+D E E +LI L +LDDV VY
Sbjct: 176 SFNSFYAVRNALEEAGFK-AADAEIVMQPTTSAELDQEGAEKVLKLIDMLEDLDDVQNVY 234
Query: 320 TD 321
++
Sbjct: 235 SN 236
>gi|421526117|ref|ZP_15972726.1| hypothetical protein B437_03491 [Fusobacterium nucleatum ChDC F128]
gi|402257876|gb|EJU08349.1| hypothetical protein B437_03491 [Fusobacterium nucleatum ChDC F128]
Length = 249
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 137/247 (55%), Gaps = 19/247 (7%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RKGAQD K+AKL+++ G+E+ A K+GG +P N L +EKAK ++PKDI
Sbjct: 6 KWNNIQHRKGAQDKKRAKLFTKFGRELTIAAKEGGSDPNFNPRLRLAIEKAKAGNMPKDI 65
Query: 139 VERNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ER IK+ S + + F E YE YG G + +VE +TD R+ + +R G +
Sbjct: 66 LERAIKKGSGELEGVDFTEMRYEGYGPAGTAFIVEAVTDNKNRTASEMRMTFSRKDGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G+V + F++ ++ +K D D+ + AL+AGAEDV T+ED Y++V
Sbjct: 126 ADGAVSWMFKKKGIITVKAEGIDTDEFMMAALEAGAEDV---------TEED---GYFEV 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIA---KLLELDD 314
+ + + L+ AG +E S ++P T+++ D +E K+++A L +LDD
Sbjct: 174 TTEYTEFQTVLENLKNAGYQYEEAEIS-MIPENTVQITD--LETAKKVMALYDALEDLDD 230
Query: 315 VDAVYTD 321
VY++
Sbjct: 231 SQNVYSN 237
>gi|372223366|ref|ZP_09501787.1| hypothetical protein MzeaS_13680 [Mesoflavibacter
zeaxanthinifaciens S86]
Length = 236
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 135/244 (55%), Gaps = 13/244 (5%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR RK + A +K ++R+GK+++ AVK+GGP+P +N+ L AV++ AK +++P
Sbjct: 1 MGRAFEFRKARKMKRWAAMSKAFTRIGKDIVMAVKEGGPDPDANSRLRAVIQNAKSVNMP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
KD +ER IKRAS+K Q + E ++E Y G++I++E TD TR+VA +R C G
Sbjct: 61 KDNIERAIKRASDKSQGDYKEVLFEGYAPHGIAILIETATDNNTRTVANIRSYFNKCNGS 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV F F I D ++L +D GAE+V V+ED
Sbjct: 121 LGTSGSVEFMFDHTCNFRINGEGLDPEELELELIDFGAEEVF---VDEDGI--------- 168
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+ + +++ D+ +L GI +G E +P T E+++E + ++L+ K+ E DDV
Sbjct: 169 LIYAPFESFGDLQKELESRGIEI-LSSGFERIPQVTKELNEEQVADVEKLLEKIEEDDDV 227
Query: 316 DAVY 319
VY
Sbjct: 228 QNVY 231
>gi|167772172|ref|ZP_02444225.1| hypothetical protein ANACOL_03547 [Anaerotruncus colihominis DSM
17241]
gi|167665970|gb|EDS10100.1| DNA-binding regulatory protein, YebC/PmpR family [Anaerotruncus
colihominis DSM 17241]
Length = 247
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 135/242 (55%), Gaps = 17/242 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +K D ++AK+++++G+E+ A ++GGP+P +N+ LA ++ KAK +VP D +E
Sbjct: 8 ANIKRKKEKTDGQRAKIFTKIGREITVAAREGGPDPNNNSRLATLIAKAKANNVPNDNIE 67
Query: 141 RNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
R +K+A E G+E + E YE YG GV+++VE LTD R+ +R CGG + G
Sbjct: 68 RLLKKAGE-GKEDYEEITYEGYGPSGVALIVETLTDNRNRTAGDLRHYFDKCGGNLGQTG 126
Query: 201 SVMFKFRRARVVNIKFTDA--DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
SV F F R ++ I+ D D+++++D + GA TD + + +
Sbjct: 127 SVSFLFERRGMIYIENEDNRIDEEKVMDDCFEVGA------------TDFNYEDGMITIT 174
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLEL-DDVDA 317
+ ++ + L+E G +++ +E +P+T ++DDEA+ E + LLE DDV
Sbjct: 175 TEPNDVPKVAAALQEKGYTYDSAE-AEYIPMTKSKIDDEALLQKMEKLLDLLEENDDVQN 233
Query: 318 VY 319
VY
Sbjct: 234 VY 235
>gi|429766217|ref|ZP_19298491.1| DNA-binding regulatory protein, YebC/PmpR family [Clostridium
celatum DSM 1785]
gi|429185197|gb|EKY26186.1| DNA-binding regulatory protein, YebC/PmpR family [Clostridium
celatum DSM 1785]
Length = 246
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 136/238 (57%), Gaps = 13/238 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I +KG DAK+ K+++++G+E++ AVK GGP+P +N L + KAK ++P D V+R+
Sbjct: 10 IQNKKGKADAKRGKIFTKIGRELMIAVKNGGPDPDNNPKLRDAIAKAKAANMPNDTVQRS 69
Query: 143 IKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+AS E G + VYE YG GV+++V+ LTD RS VR GG M G
Sbjct: 70 IKKASGELGAVDYERIVYEGYGPSGVAVIVDTLTDNKNRSAGNVRSAFTKGGGNMGTTGC 129
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
V F F+ + I+ D D+++L+ +ALDAGAED ++DE E + + +
Sbjct: 130 VGFMFQEKGEIVIEKGDLDEEELMMMALDAGAEDF--------NSDE---EEVFIITTEP 178
Query: 262 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
D++ + L G+ F + +++P T E+D++A + ++++ L + DDV VY
Sbjct: 179 DDFGTVREALEAEGLEF-LEAAVKMIPDTYTEIDEDAAKKFQKMLDLLEDDDDVQEVY 235
>gi|326803199|ref|YP_004321017.1| DNA-binding regulatory protein, YebC/PmpR family [Aerococcus urinae
ACS-120-V-Col10a]
gi|326650563|gb|AEA00746.1| DNA-binding regulatory protein, YebC/PmpR family [Aerococcus urinae
ACS-120-V-Col10a]
Length = 243
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 134/244 (54%), Gaps = 20/244 (8%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
SKI KGA+DAK+AK++ ++ +E+ AVK+GGP+ +N L V++KAK ++PK +E
Sbjct: 8 SKIKNTKGAEDAKRAKIFQKLSREIYMAVKQGGPDADANPSLRMVMDKAKAANMPKTNIE 67
Query: 141 RNIKRASEK-GQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I + S G E + E YE YG G+++ VE LTD R++ VR + GG + +
Sbjct: 68 RAIDKGSNTAGGEDYDEVTYEGYGPNGIAVFVETLTDNTNRTLTNVRTIFNRNGGSLGES 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQ--LLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV + F R + I+ D D D+ + A+DAGAED+ ++ +++
Sbjct: 128 GSVAYMFDRKGYLAIEREDLDVDEETMFMDAIDAGAEDL------------QTSDEVFEI 175
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDV 315
+ ++++ + L E G T SEL +P T I++ D+ + LI KL + DDV
Sbjct: 176 YTEANDFGAVRDALEEKGYKLAT---SELTMVPKTMIDLPDDKKATFETLIEKLEDDDDV 232
Query: 316 DAVY 319
VY
Sbjct: 233 QNVY 236
>gi|421872275|ref|ZP_16303894.1| conserved hypothetical protein [Brevibacillus laterosporus GI-9]
gi|372458887|emb|CCF13443.1| conserved hypothetical protein [Brevibacillus laterosporus GI-9]
Length = 248
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 133/242 (54%), Gaps = 16/242 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
AG+KGA D KK Y ++ +++ K GGP+PT+N L A++ A+ +++P D +ER
Sbjct: 7 FAGKKGAADQKKNNQYVKLARQIFVEAKNGGPDPTANLKLKAIIANARAINMPNDNIERA 66
Query: 143 IKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+A++ GQ E++ YE Y GGV+++VE L+D R+ A VR + GG M + GS
Sbjct: 67 IKKATDSGQGDNYEEIRYEGYAPGGVAVIVECLSDNRNRTAADVRAIFGKRGGNMGETGS 126
Query: 202 VMFKFRRARVVNI--KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
V F F R V+ I + + D+D +L AL+AGAED+I V E++ ++V++
Sbjct: 127 VSFMFDRKGVIVIDREEFEVDEDTMLMQALEAGAEDLI---VTEEE---------FEVIT 174
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ L G F T+ + +P T+++ E E +++ E DDV VY
Sbjct: 175 HPHELEQVKHALETEGYKF-TNAEIQWIPQNTVKISGEDAEKILKMMEAFEENDDVQNVY 233
Query: 320 TD 321
+
Sbjct: 234 AN 235
>gi|406962504|gb|EKD88838.1| hypothetical protein ACD_34C00308G0003 [uncultured bacterium]
Length = 251
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 139/241 (57%), Gaps = 15/241 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I +KGA DAK+ ++++R+ +E++ + ++GG +P SN L ++KA+ +PKD ++R
Sbjct: 10 IKRKKGATDAKRGQVFTRLTREIVMSAREGGADPDSNFRLRLAIDKARAQSMPKDNIDRA 69
Query: 143 IKRASEKGQEAFI--EKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
+KRA+ +G+E I E YE Y G+++++E +T+ R+VA +R ++ GG M + G
Sbjct: 70 LKRAAGEGKEGEIYEEVSYEGYAPNGIAVIIECVTENRNRTVAEIRHLLTRSGGNMGELG 129
Query: 201 SVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
SV ++F+RA + + D +++ ++A++ GA+D VNEDD + V++
Sbjct: 130 SVGWQFKRAATYSFDSSKYDFEKVFELAVEGGADD-----VNEDDGE-------INVIAP 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ + ++ + R A + TD G ++P +E+ E I L ELDDV VY+
Sbjct: 178 VEAFKTLSDRFRAANM-MPTDAGLSMIPTNEMELSVEDTLQVVRTIENLEELDDVQNVYS 236
Query: 321 D 321
+
Sbjct: 237 N 237
>gi|392949240|ref|ZP_10314827.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
pentosus KCA1]
gi|392435552|gb|EIW13489.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
pentosus KCA1]
Length = 242
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 128/240 (53%), Gaps = 17/240 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ AVK GGP+P SN L V++KAK ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKVFQKISRELYMAVKAGGPDPDSNAQLRLVMDKAKAANMPKDNIKRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ + S G E + E YE YG GG++++V LTD R+ AAVR GG +A G+V
Sbjct: 70 VDKGSGSGAENYEEVTYEGYGPGGIAVLVHALTDNKNRTAAAVRSAFTHHGGSLAATGAV 129
Query: 203 MFKFRRARVVNIKFTDADKDQ---LLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
+ F R + I D D D+ L+D+ LDAG +D+ ++ +++ +
Sbjct: 130 SYMFDRKGYIVISREDLDTDEDTMLMDV-LDAGGDDL------------QSSDEAFEIYT 176
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ L +G ET + ++P +V + E + +I +L + DDV VY
Sbjct: 177 DPKQLAAVRDALEASGYKLETAELT-MIPENLTDVPADKAEKLQHMIDELEDNDDVSEVY 235
>gi|317484652|ref|ZP_07943555.1| hypothetical protein HMPREF0179_00906 [Bilophila wadsworthia 3_1_6]
gi|316924126|gb|EFV45309.1| hypothetical protein HMPREF0179_00906 [Bilophila wadsworthia 3_1_6]
Length = 248
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/246 (35%), Positives = 135/246 (54%), Gaps = 23/246 (9%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKG QDAK+ K +++ KE+I A K GG +P SN+ L A + AK +++PKD +E
Sbjct: 8 ANIQHRKGRQDAKRGKEFTKAAKEIIIAAKNGG-DPASNSRLRAAIAAAKSINLPKDKIE 66
Query: 141 RNIKRASEKGQEA---FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
I++ + GQ+A IE YE YG GGV+++VE TD R+VA +R ++ GG M
Sbjct: 67 AAIRKGT--GQDAGGDIIEINYEGYGPGGVAVIVETATDNRNRTVAEIRHLMSKGGGSMG 124
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
+ G V +KF R V+ +DQL++ AL+AGA+D+ D+ D +++
Sbjct: 125 ENGCVSWKFERKGVIQFSKEKYTEDQLMEAALEAGADDL------RDEGD------VWEI 172
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDV 315
+ ++ + AG+ + +EL +P TT+EVD E I L + DDV
Sbjct: 173 QTAMADFNSVREAFEAAGLEMIS---AELNQVPQTTMEVDLETARKLLRFIELLEDNDDV 229
Query: 316 DAVYTD 321
VY+D
Sbjct: 230 QNVYSD 235
>gi|300087333|ref|YP_003757855.1| hypothetical protein Dehly_0207 [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299527066|gb|ADJ25534.1| protein of unknown function DUF28 [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 250
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 133/244 (54%), Gaps = 18/244 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +KGA DAK+ +L++++ +E+I + K GGP+P N L ++KA++ +P D +E
Sbjct: 8 ATIKHQKGAADAKRGQLFTKLSREIILSAKDGGPDPAMNARLRLAVQKARDARMPSDNIE 67
Query: 141 RNIKRASEKGQ---EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
R IK+ S GQ E E E YG GGV+I+V+ ++D R++ VR + GG M
Sbjct: 68 RAIKKGS--GQLEGETLFELTLEGYGPGGVAILVQAVSDNRNRTIQEVRHLFTKSGGAMG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
+ G V + F +VN+ + D D++ +DAGAEDV + D D Y +V
Sbjct: 126 EAGCVAWIFDPKGIVNVNAENRDTDEVTLEVIDAGAEDV------KADGD------YLEV 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
++ + + + IP E ++G E+ P T +E+DD+ +L+ L +LDD
Sbjct: 174 ITAPEQLEAVRQAVEAKAIPIE-NSGLEMKPKTLVELDDDTAVQVLKLLTALEDLDDAQN 232
Query: 318 VYTD 321
VY++
Sbjct: 233 VYSN 236
>gi|387125915|ref|YP_006294520.1| DNA-binding regulatory protein [Methylophaga sp. JAM1]
gi|386272977|gb|AFI82875.1| DNA-binding regulatory protein [Methylophaga sp. JAM1]
Length = 249
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 138/242 (57%), Gaps = 14/242 (5%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKGAQDAK+ KL++R+ +E+ A + GG +P +N L A ++KA ++ KD++E
Sbjct: 8 ANIQHRKGAQDAKRGKLFTRLIREITVAARMGGSDPATNPRLRAAIDKALGSNMTKDVIE 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R KR + + + A E++ YE YG G++I+V+ +TD R+VA VR V GG M
Sbjct: 68 RASKRGAGELEGAAYEEIRYEGYGPNGIAIMVDCMTDNRNRTVAEVRHVFSKRGGNMGTD 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F + +++ D +D +++IAL+AGAED++ A+ V +
Sbjct: 128 GSVAYLFNQKGIISFG-NDVTEDDVMEIALEAGAEDIVT-----------NADGSVDVFT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ ++Y+ + L AG+ ++ + + P TT+ ++ E + +I ELDDV VY
Sbjct: 176 SPEDYSAVKDALDTAGLEAQSAEVT-MHPDTTVSLELEDAQKAIAMIEAFEELDDVQQVY 234
Query: 320 TD 321
++
Sbjct: 235 SN 236
>gi|325068883|ref|ZP_08127556.1| hypothetical protein AoriK_13725 [Actinomyces oris K20]
Length = 254
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 89/238 (37%), Positives = 127/238 (53%), Gaps = 16/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++R+ K + A + GG +PT N L ++KAK+ VP D + R +KR
Sbjct: 13 KKAAIDAKRGKLFARLIKNIEVAARTGGGDPTGNPTLFDAIQKAKKNSVPADNITRAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S E G + +YE YG GGV+ +VE LTD R+ + VR GG +ADPGSV
Sbjct: 73 GSGEEAGGADWQTIMYEGYGPGGVAFLVECLTDNRNRAASDVRVAFSRNGGNLADPGSVA 132
Query: 204 FKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
+ F R VV + D D+D +L LDAGAE+V ED E +++ S
Sbjct: 133 YNFTRKGVVEVAKADGVDEDSILMAVLDAGAEEV-----------EDMGES-FEIYSEPG 180
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ + T L EAG+ +++ + + T +EVD E LI L + DDV VYT
Sbjct: 181 DIVAVRTALTEAGMDYDSAE-VQFVAGTKVEVDVEGARKVFRLIDALEDSDDVQNVYT 237
>gi|380302290|ref|ZP_09851983.1| hypothetical protein BsquM_09436 [Brachybacterium squillarum M-6-3]
Length = 252
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 131/238 (55%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++++ K + A + GGP+P N L ++KAK+ VP D ++R +KR
Sbjct: 13 KKAAIDAKRGKLFAKLIKNIEVAARVGGPDPAGNPTLFDAIQKAKKSSVPNDNIDRAVKR 72
Query: 146 ASEKGQEA--FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
+ +YE Y GGV+++VE LTD R+V+ VR GG MAD GSV
Sbjct: 73 GGGLDGGGVDYQTLMYEGYAPGGVALLVECLTDNKNRAVSEVRLAFTRSGGNMADSGSVS 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R VV + +D+LL++ LDAGAE++ E E DT ++++S + +
Sbjct: 133 YMFNRKGVVTLPAEGNTEDELLEVVLDAGAEEISE----EGDT--------FEIISEAAD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ T L+EAGI +++ ++ +P EVD + LI L + DDV VY++
Sbjct: 181 VVAVRTALQEAGIDYDSAE-AQFVPNIRTEVDLDGARKVLRLIDALEDSDDVQNVYSN 237
>gi|83755978|gb|ABC44091.1| conserved hypothetical protein TIGR01033 [Salinibacter ruber DSM
13855]
Length = 279
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 136/244 (55%), Gaps = 14/244 (5%)
Query: 78 RRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKD 137
R+ +K+ +K D +K+K+++R+ +E+ A ++GG +P +N L+ LE+A+E D+ KD
Sbjct: 28 RKWAKVKRKKQKDDRRKSKVWARLSQEIEKAAREGGGDPDANVALSQALERAREEDMAKD 87
Query: 138 IVERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKM 196
+ER IKR + + +E EKV YE Y GV++ VE T+ I R+V +R + D GG +
Sbjct: 88 TIERAIKRGTGELEEEGREKVTYEGYAPHGVAVFVEGETENINRTVKDLRNLFSDHGGNL 147
Query: 197 ADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
GSV + F + I D+ L ++A++AGAE+V D+TD Y
Sbjct: 148 GKDGSVAYLFEQKGRFEIAADATDEMTLFEVAVEAGAEEV-------DETD-----GTYV 195
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
V + D + D+ L EAG+P E N P TT+ + + + + LI K+ +L DV
Sbjct: 196 VTTGRDAFADVGEALDEAGLPVEA-NALVRAPTTTVALAPDERDAVRGLIEKINDLRDVT 254
Query: 317 AVYT 320
+VYT
Sbjct: 255 SVYT 258
>gi|379704912|ref|YP_005203371.1| YebC/PmpR family DNA-binding regulatory protein [Streptococcus
infantarius subsp. infantarius CJ18]
gi|374681611|gb|AEZ61900.1| DNA-binding regulatory protein, YebC/PmpR family [Streptococcus
infantarius subsp. infantarius CJ18]
Length = 241
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 133/244 (54%), Gaps = 16/244 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
SKI +KG DAK+ +++++ +E+ A K GG +P+ N L VL+KA+ ++PKD +
Sbjct: 8 SKIKNKKGEADAKRGAIFNKLSREIFVAAKAGGGDPSMNASLRMVLDKARAANMPKDNIN 67
Query: 141 RNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+A++ G + E YE YG GGV+I+V LTD R+ A + + GG M
Sbjct: 68 RAIKKATDVGDTTNYDEITYEGYGPGGVAILVHTLTDNKKRTDANMHTIFTRNGGNMGST 127
Query: 200 GSVMFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV + F R V++ + D D+D +L++ LDAGAED+ DD Y++
Sbjct: 128 GSVAYMFERKGYIVIDRENLDLDEDSILELILDAGAEDL----KTSDDA--------YEI 175
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ S + + L+ I F S ++P I +D E ++ + L+ KL + DDV
Sbjct: 176 FTESKEFPAVKEALQAQNIEFAQAQLS-MIPQNYISLDAEQADILETLVDKLEDDDDVQD 234
Query: 318 VYTD 321
VYT+
Sbjct: 235 VYTN 238
>gi|161507245|ref|YP_001577199.1| hypothetical protein lhv_0777 [Lactobacillus helveticus DPC 4571]
gi|260102544|ref|ZP_05752781.1| glucose-1-phosphate adenylyltransferase [Lactobacillus helveticus
DSM 20075]
gi|385814171|ref|YP_005850564.1| Glucose-1-phosphate adenylyl transferase [Lactobacillus helveticus
H10]
gi|172048213|sp|A8YUH0.1|Y777_LACH4 RecName: Full=Probable transcriptional regulatory protein lhv_0777
gi|160348234|gb|ABX26908.1| hypothetical protein lhv_0777 [Lactobacillus helveticus DPC 4571]
gi|260083638|gb|EEW67758.1| glucose-1-phosphate adenylyltransferase [Lactobacillus helveticus
DSM 20075]
gi|323466890|gb|ADX70577.1| Glucose-1-phosphate adenylyl transferase [Lactobacillus helveticus
H10]
Length = 242
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 126/240 (52%), Gaps = 15/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K GGP+P N L V++KA+ ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKLSREIYMAAKSGGPDPDGNPTLRMVIDKARSNNMPKDNIKRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A +E + E YE Y GGV++ VE LTD R+ + VR GG + GSV
Sbjct: 70 IKKAEGGSEEHYDEITYEGYAPGGVAVFVEALTDNKNRTASDVRVAFTRNGGSLGATGSV 129
Query: 203 MFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R V++ TDAD+DQ+L +DAG +D+ DD +++ +
Sbjct: 130 AYMFDRKGYIVIDRSTTDADEDQVLLDVMDAGGDDL----QTSDDA--------FEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ D+ L + G D ++P T V + E + L+ L + DDV VYT
Sbjct: 178 PKQFADVRDALIKDGYKL-ADAELTMIPQNTTPVPADKKEQFEHLVDALEDSDDVQNVYT 236
>gi|51892142|ref|YP_074833.1| hypothetical protein STH1004 [Symbiobacterium thermophilum IAM
14863]
gi|60390892|sp|Q67QQ4.1|Y1004_SYMTH RecName: Full=Probable transcriptional regulatory protein STH1004
gi|51855831|dbj|BAD39989.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
14863]
Length = 242
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 134/249 (53%), Gaps = 16/249 (6%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ I K D ++ +SR+ K+++ A ++GGP+P +N +L + A++ ++P
Sbjct: 1 MGRKWENIKRSKAKLDQQRGATFSRITKDIMKAAREGGPDPETNFLLKVAVAAARKANMP 60
Query: 136 KDIVERNIKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGG 194
+ ++R I R A E F E VYE YG GGV+I++ ++TD R+ A VR + GG
Sbjct: 61 NENIQRAIARGAGLDSAERFDEIVYEGYGPGGVAIMMNIVTDNRNRTAADVRHIFSKHGG 120
Query: 195 KMADPGSVMFKFRRARVVNIKF--TDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAE 252
+ + G V + F++ V+ I T +D L+ IALDAGAED++ T+ED
Sbjct: 121 SLGETGCVSWMFKKRGVIEIDRGETPIGEDDLMMIALDAGAEDLV--------TEEDS-- 170
Query: 253 RYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLEL 312
Y + + D + +L AG+P E + ++P TT+ V E E L+ L E
Sbjct: 171 --YAIYTAPDALNQVMKQLEAAGVPVEKGEVA-MVPTTTVAVSGEEAEQLMRLLDLLEEH 227
Query: 313 DDVDAVYTD 321
DDV VYT+
Sbjct: 228 DDVQNVYTN 236
>gi|117928553|ref|YP_873104.1| hypothetical protein Acel_1346 [Acidothermus cellulolyticus 11B]
gi|166200370|sp|A0LUK8.1|Y1346_ACIC1 RecName: Full=Probable transcriptional regulatory protein Acel_1346
gi|117649016|gb|ABK53118.1| protein of unknown function DUF28 [Acidothermus cellulolyticus 11B]
Length = 248
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 128/238 (53%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K DA++ KL++++ K + A + GGP+P N LA + KA++ VP D +ER I+R
Sbjct: 13 KKAVIDARRGKLFAKLIKNIEVAARVGGPDPNGNPTLADAIAKARDQSVPNDNIERAIRR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
+ E G + +YE YG GGV++++E LTD R+ + VR + GG MADPGSV
Sbjct: 73 GAGLEAGGTDWEPIIYEGYGPGGVALLIECLTDNRNRAASEVRTTMTRNGGSMADPGSVA 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R +V + +D +L LDAGAE+V +D E ++VVS +
Sbjct: 133 YLFNRKGIVIVPKEGRSEDDVLAAVLDAGAEEV-------NDLGES-----FEVVSEPGD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
T + L AGI +E+ + + P + +DD+ LI L + DDV AV+ +
Sbjct: 181 LTRVRDALSAAGIRYESADVA-WQPTVNVPLDDDTARKVLRLIEALEDCDDVQAVWAN 237
>gi|418676296|ref|ZP_13237580.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
kirschneri serovar Grippotyphosa str. RM52]
gi|418684915|ref|ZP_13246098.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
kirschneri serovar Grippotyphosa str. Moskva]
gi|418742545|ref|ZP_13298916.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
kirschneri serovar Valbuzzi str. 200702274]
gi|400323442|gb|EJO71292.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
kirschneri serovar Grippotyphosa str. RM52]
gi|410740663|gb|EKQ85378.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
kirschneri serovar Grippotyphosa str. Moskva]
gi|410750203|gb|EKR07185.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
kirschneri serovar Valbuzzi str. 200702274]
Length = 249
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 138/238 (57%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A D+K+ +++R+GKE+ A K GG +P N L + KAK +++PKD +ER +++
Sbjct: 13 KKDAIDSKRGAIFTRVGKEITVAAKMGGGDPEGNPRLRLAILKAKSVNMPKDNIERAVRK 72
Query: 146 AS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMF 204
+ E + E +YE +G GG++I+V +TDK +R+ ++ ++ GG +A GSV
Sbjct: 73 GTGELEGVTYEECLYECFGPGGIAIMVSAVTDKKSRTTPEIKSILTKLGGSLATSGSVSR 132
Query: 205 KFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNY 264
F + V+ ++F+ +D+L+D+A+ GAEDVI NE + Y+V++T DNY
Sbjct: 133 LFEKKGVIVLEFSQISEDELVDVAVGGGAEDVI----NEGEV--------YRVITTPDNY 180
Query: 265 TDITTKLREAGIPFETDNGSELLPITTIEV-DDEAMELNKELIAKLLELDDVDAVYTD 321
+ L E G+ E ++ +P+ + E+ D E E +LI +L DDV +V ++
Sbjct: 181 ESVLHALNEKGLKSE-ESEIRYIPLVSSEIADKEVAEKVMKLIDQLDGHDDVTSVTSN 237
>gi|227496225|ref|ZP_03926522.1| protein of hypothetical function DUF28 [Actinomyces urogenitalis
DSM 15434]
gi|226834240|gb|EEH66623.1| protein of hypothetical function DUF28 [Actinomyces urogenitalis
DSM 15434]
Length = 254
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 126/238 (52%), Gaps = 16/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++R+ K + A + GG +P N L ++KAK+ VP D + R +KR
Sbjct: 13 KKAAIDAKRGKLFARLIKNIEVAARTGGGDPAGNPTLFDAIQKAKKNSVPADNITRAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S E G + +YE YG GV+ +VE LTD R+ + VR GG +ADPGSV
Sbjct: 73 GSGEEAGGADWQTIMYEGYGPAGVAFLVECLTDNRNRAASDVRVAFTRTGGNLADPGSVA 132
Query: 204 FKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
+ F R VV I D D+D +L LDAGAE+V+E P ++V+
Sbjct: 133 YNFTRKGVVEIAKADGIDEDSILMAVLDAGAEEVVEGP------------ESFEVLCEPT 180
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ + + EAG+ +++ S+ + T +EVD + LI L +LDDV V+T
Sbjct: 181 DLIAVRNAVTEAGMEYDSAE-SQFVAGTKVEVDLDGARKVMRLIDALEDLDDVQNVFT 237
>gi|15643232|ref|NP_228276.1| hypothetical protein TM0466 [Thermotoga maritima MSB8]
gi|4980974|gb|AAD35550.1|AE001724_8 conserved hypothetical protein [Thermotoga maritima MSB8]
Length = 254
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 140/243 (57%), Gaps = 16/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAKK+K+++++ +E+I A ++GG N +N L A +E+A+ ++PK+ +E
Sbjct: 9 ANIKHRKMAQDAKKSKIFTKLIREIIVAAREGGGNIETNPRLRAAVERARAENMPKENIE 68
Query: 141 RNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IKR + + + + E +YE Y GGV++ + LTD R+ +R + GG +A+
Sbjct: 69 RAIKRGTGELEGVDYQEVIYEGYAPGGVAVYIRALTDNKNRTAQELRHLFNKYGGSLAES 128
Query: 200 GSVMFKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
GSV + F R V+ I D ++L+ IA+DAGAED+ + AE +++
Sbjct: 129 GSVSWIFERKGVIEISRDKVKDLEELMMIAIDAGAEDIKD------------AEDPIQII 176
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+ +N +++ +KL EAG +E + +P T++V + E E + L ++DDV V
Sbjct: 177 TAPENLSEVKSKLEEAG--YEVEAKVTFIPKNTVKVTGKDAEKVLEFLNALEDMDDVQEV 234
Query: 319 YTD 321
Y++
Sbjct: 235 YSN 237
>gi|340360135|ref|ZP_08682606.1| YebC like protein [Actinomyces sp. oral taxon 448 str. F0400]
gi|339883902|gb|EGQ73734.1| YebC like protein [Actinomyces sp. oral taxon 448 str. F0400]
Length = 252
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/238 (36%), Positives = 127/238 (53%), Gaps = 16/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++R+ K V A + GG +P N L ++KA++ VP D + R +KR
Sbjct: 13 KKAAIDAKRGKLFARLIKNVEVAARTGGGDPAGNPTLFDAIQKARKNSVPADNITRAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S E G + +YE YG GV+ +VE LTD R+ + VR GG +ADPGSV
Sbjct: 73 GSGEEAGGADWQTIMYEGYGPAGVAFLVECLTDNRNRAASDVRVAFTRTGGSLADPGSVA 132
Query: 204 FKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
+ F R VV I TD D+D +L LDAGAE+V+E ++V+S +
Sbjct: 133 YNFTRKGVVEIAKTDGIDEDAILMAVLDAGAEEVVE------------GRDSFEVISEPN 180
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ + + + EAG+ +++ S + T IEV E LI L +LDDV V+T
Sbjct: 181 DLIAVRSAVTEAGMDYDSAE-SHFVAGTKIEVGPEDARKVLRLIDALEDLDDVQNVFT 237
>gi|332716457|ref|YP_004443923.1| hypothetical protein AGROH133_12039 [Agrobacterium sp. H13-3]
gi|417860867|ref|ZP_12505922.1| hypothetical protein Agau_L100306 [Agrobacterium tumefaciens F2]
gi|418298584|ref|ZP_12910422.1| hypothetical protein ATCR1_13698 [Agrobacterium tumefaciens
CCNWGS0286]
gi|418406054|ref|ZP_12979374.1| hypothetical protein AT5A_02490 [Agrobacterium tumefaciens 5A]
gi|325063142|gb|ADY66832.1| hypothetical protein AGROH133_12039 [Agrobacterium sp. H13-3]
gi|338821271|gb|EGP55240.1| hypothetical protein Agau_L100306 [Agrobacterium tumefaciens F2]
gi|355536497|gb|EHH05770.1| hypothetical protein ATCR1_13698 [Agrobacterium tumefaciens
CCNWGS0286]
gi|358007967|gb|EHK00290.1| hypothetical protein AT5A_02490 [Agrobacterium tumefaciens 5A]
Length = 248
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 131/240 (54%), Gaps = 15/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QD+ ++K++S++ +E+ A K G P+P N L ++ AK +PKD +ER
Sbjct: 10 IMHRKGKQDSVRSKMFSKLAREITVAAKAGMPDPNMNARLRLAIQNAKAQSMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+AS E + E YE YG GGV++VVE LTD R+ + VR + GG + + GSV
Sbjct: 70 IKKASGADSENYDEVRYEGYGPGGVAVVVEALTDNRNRTASNVRSIFTKAGGALGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R + K D D++++ A++AGA+DV + +E + ++ +
Sbjct: 130 SFSFDRVGEITYKAEVGDADKVMEAAIEAGADDV------------ESSEDGHTIICGFE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELL-PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+++ L G+ E ++ + P T+ VD+E + +LI L + DDV +VY++
Sbjct: 178 AMNEVSKALE--GVLGEAESVKAIWKPQNTVPVDEEKAQSLMKLIDNLEDDDDVQSVYSN 235
>gi|323702069|ref|ZP_08113737.1| protein of unknown function DUF28 [Desulfotomaculum nigrificans DSM
574]
gi|333923427|ref|YP_004497007.1| hypothetical protein Desca_1235 [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|323532951|gb|EGB22822.1| protein of unknown function DUF28 [Desulfotomaculum nigrificans DSM
574]
gi|333748988|gb|AEF94095.1| UPF0082 protein yeeN [Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 244
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 135/239 (56%), Gaps = 16/239 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K DA++ K+++R+ KE+I A + GGP+P+ N L +EKAK ++P + ++R I++
Sbjct: 13 KKAKIDAQRGKIFTRLSKEIIIATRIGGPDPSGNMRLKTAIEKAKAANIPNENIQRAIQK 72
Query: 146 ASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV-- 202
+ G+ F E YE YG GGV+I+++V TD R+ VR + GG + + G V
Sbjct: 73 GAGGGEGTNFDEFYYEGYGPGGVAILLKVATDNRNRTAGEVRHIFSKHGGNLGETGCVSW 132
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
MFK + +V+ T+ +D L+ +AL+AGAED+ V ED +++ +
Sbjct: 133 MFKEKGVIIVDRSETNISEDDLMLLALEAGAEDI---KVEEDS---------FEITTAPQ 180
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
++ + + L E GIP D ++P TT+++ E E +++I L + DDV VYT+
Sbjct: 181 DFEKVRSALVEQGIPV-ADAELSMVPDTTVKLQGEEAEKMQKMIDLLEDNDDVQEVYTN 238
>gi|373468587|ref|ZP_09559834.1| DNA-binding regulatory protein, YebC/PmpR family [Lachnospiraceae
bacterium oral taxon 082 str. F0431]
gi|371766050|gb|EHO54330.1| DNA-binding regulatory protein, YebC/PmpR family [Lachnospiraceae
bacterium oral taxon 082 str. F0431]
Length = 242
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 133/245 (54%), Gaps = 17/245 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +K DA K K+++ +G+E+ AVK+GGP+P +N+ L V+ KAK +VP D
Sbjct: 6 KFANIKHKKEKNDAAKGKIFTVIGREIAVAVKEGGPDPNNNSRLRDVIAKAKANNVPNDT 65
Query: 139 VERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ER IK+A+ + + + YE YG GV+I+VE LTD R+ A VR GG +
Sbjct: 66 IERGIKKAAGDVNSVNYEQNTYEGYGPNGVAIIVETLTDNKNRTAANVRAAFTKGGGNIG 125
Query: 198 DPGSVMFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
PG V F F + +++ + D D D+L+ ALD GAED E E+D+ Y
Sbjct: 126 TPGCVSFMFDKKGQIIIDKEECDMDPDELMMTALDLGAEDFNE----EEDS--------Y 173
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLEL-DD 314
++++ DN++ + L + GIP D ++P + + DE I LL++ DD
Sbjct: 174 EILTDPDNFSAVREGLEKLGIPM-ADAEVTMIPQNWVTLSDEEDIKKMNRILDLLDVEDD 232
Query: 315 VDAVY 319
V VY
Sbjct: 233 VQNVY 237
>gi|343084398|ref|YP_004773693.1| hypothetical protein [Cyclobacterium marinum DSM 745]
gi|342352932|gb|AEL25462.1| UPF0082 protein yeeN [Cyclobacterium marinum DSM 745]
Length = 235
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 131/244 (53%), Gaps = 13/244 (5%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR RK + ++ +K+++R+GKE++ AVK GGP+P +N L +++ AK +P
Sbjct: 1 MGRAFEFRKERKFKRWSQMSKVFTRLGKEIVMAVKAGGPDPANNAKLRTIIQNAKGASMP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
KD +E I RAS K ++ + E VYE YG G++++VE TD I R+VA VR GG
Sbjct: 61 KDRIEAAISRASNKDEKDYEEVVYEGYGPHGIAVIVETSTDNINRTVANVRHYFTKAGGS 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV F F R V D D ++L +D G ED+ DE+ E +
Sbjct: 121 LGTSGSVSFTFDRKAVFRFAKADYDLEELELELIDFGLEDI----------DENEGEIF- 169
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
V + +++ ++ L + GI + + P++T E+ E E ++I ++ E DDV
Sbjct: 170 -VYTAFEDFGNMQKALEDKGIEVISAE-MQRFPMSTTELTSEQEEDINKMIERMEEDDDV 227
Query: 316 DAVY 319
+ VY
Sbjct: 228 NHVY 231
>gi|387130674|ref|YP_006293564.1| YebC/PmpR family DNA-binding regulatory protein [Methylophaga sp.
JAM7]
gi|386271963|gb|AFJ02877.1| DNA-binding regulatory protein, YebC/PmpR family [Methylophaga sp.
JAM7]
Length = 249
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 135/242 (55%), Gaps = 14/242 (5%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKGAQDAK+ KL++R+ +E+ A + GG +P SN L A ++KA ++ KD++E
Sbjct: 8 ANIQHRKGAQDAKRGKLFTRLIREITVAARMGGSDPASNPRLRAAIDKALGSNMTKDVIE 67
Query: 141 RNIKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R KR A E A+ E YE YG G++I+V+ +TD R+VA VR V GG M
Sbjct: 68 RASKRGAGELEGVAYEEVRYEGYGPNGIAIMVDCMTDNRNRTVAEVRHVFTKRGGNMGTD 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
G V F F + +++ TD ++D ++++AL+AGAED++ N+D + V +
Sbjct: 128 GCVAFMFNQKGIISFA-TDVEEDDIMEVALEAGAEDIV---TNDDGS--------IDVFT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
++Y + L AG ++ + + P T+ ++ + + LI ELDDV VY
Sbjct: 176 PPEDYAAVKDALDNAGFSAQSAEVT-MHPDNTVSLELDDAQKAIALIEAFEELDDVQQVY 234
Query: 320 TD 321
++
Sbjct: 235 SN 236
>gi|157363874|ref|YP_001470641.1| hypothetical protein Tlet_1011 [Thermotoga lettingae TMO]
gi|166919120|sp|A8F5Z3.1|Y1011_THELT RecName: Full=Probable transcriptional regulatory protein Tlet_1011
gi|157314478|gb|ABV33577.1| protein of unknown function DUF28 [Thermotoga lettingae TMO]
Length = 253
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 145/244 (59%), Gaps = 18/244 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAKK++L++++ +E+I A ++GG +P +N+ L +EKAKE ++P++ +E
Sbjct: 8 ANIKHRKMAQDAKKSQLFTKLIRELIVAAREGGGDPETNSRLRTAIEKAKEANMPRENIE 67
Query: 141 RNIKRASE--KGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMAD 198
+ IKR + +G E + E +YE YG GGV++ + LTD R+ +R V+ GG +AD
Sbjct: 68 KAIKRGTGELEGVE-YQEIIYEAYGPGGVALYIRALTDNKNRTAQELRHVLSRHGGSLAD 126
Query: 199 PGSVMFKFRRARVVNIKFTD-ADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G+V + F R ++++ A+ ++L+ +A+DAGAED+ DD D+ ++
Sbjct: 127 LGAVGWIFERKGIISVPRDQVANVEELVMMAIDAGAEDI-------DDQDDP-----VRI 174
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
++ DN + +L + G ++ + G +P T++V + E L+ L ++DDV
Sbjct: 175 TTSPDNLMSVKEELEKNG--YKAEAGISYVPKNTVQVTGKDAEKILALLNALEDMDDVQD 232
Query: 318 VYTD 321
VY++
Sbjct: 233 VYSN 236
>gi|442805800|ref|YP_007373949.1| hypothetical protein Cst_c23790 [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442741650|gb|AGC69339.1| hypothetical protein Cst_c23790 [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 242
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 139/244 (56%), Gaps = 16/244 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +K DA+K K+++++G+E+ AVK GGP+P +N+ L + KAK ++P +
Sbjct: 6 KWANIRHKKEKTDAQKGKIFTKLGREIAMAVKAGGPDPETNSRLKDAIAKAKANNMPNEN 65
Query: 139 VERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ R+IK+A+ + + + E VYE YG GGV+I+VE LT+ R+ +R + GG +
Sbjct: 66 IMRSIKKAAGDISTDDYEEIVYEGYGPGGVAIIVETLTNNRNRTAGDIRHIFDKYGGNLG 125
Query: 198 DPGSVMFKF-RRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
G V F F +R +++ K D+D L+ AL+AGA DV ED+ YY+
Sbjct: 126 TTGCVSFMFDKRGQIIIEKNDSIDEDSLMMSALEAGALDV----AVEDE--------YYE 173
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKE-LIAKLLELDDV 315
+++ +++ + L + G FE+ + ++P TT + +E M N E LI KL + DDV
Sbjct: 174 IITEPQDFSKVADALEKEGYKFESAEVA-MIPKTTTTLTNEEMIANMEKLIEKLEDHDDV 232
Query: 316 DAVY 319
+Y
Sbjct: 233 QNIY 236
>gi|161986638|ref|YP_446765.2| hypothetical protein SRU_2667 [Salinibacter ruber DSM 13855]
gi|118574126|sp|Q2RZ66.2|Y2667_SALRD RecName: Full=Probable transcriptional regulatory protein SRU_2667
Length = 257
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 136/244 (55%), Gaps = 14/244 (5%)
Query: 78 RRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKD 137
R+ +K+ +K D +K+K+++R+ +E+ A ++GG +P +N L+ LE+A+E D+ KD
Sbjct: 6 RKWAKVKRKKQKDDRRKSKVWARLSQEIEKAAREGGGDPDANVALSQALERAREEDMAKD 65
Query: 138 IVERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKM 196
+ER IKR + + +E EKV YE Y GV++ VE T+ I R+V +R + D GG +
Sbjct: 66 TIERAIKRGTGELEEEGREKVTYEGYAPHGVAVFVEGETENINRTVKDLRNLFSDHGGNL 125
Query: 197 ADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
GSV + F + I D+ L ++A++AGAE+V D+TD Y
Sbjct: 126 GKDGSVAYLFEQKGRFEIAADATDEMTLFEVAVEAGAEEV-------DETD-----GTYV 173
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
V + D + D+ L EAG+P E N P TT+ + + + + LI K+ +L DV
Sbjct: 174 VTTGRDAFADVGEALDEAGLPVEA-NALVRAPTTTVALAPDERDAVRGLIEKINDLRDVT 232
Query: 317 AVYT 320
+VYT
Sbjct: 233 SVYT 236
>gi|306830926|ref|ZP_07464088.1| glucose-1-phosphate adenylyltransferase [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
gi|304426949|gb|EFM30059.1| glucose-1-phosphate adenylyltransferase [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
Length = 256
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 86/269 (31%), Positives = 140/269 (52%), Gaps = 21/269 (7%)
Query: 58 VKHCNFQVRTIRTFAPVCMG--RRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPN 115
+ C+ R F CM + SKI +KG DAK+ +++++ +E+ A K GG +
Sbjct: 1 MAECDIIARNREEF---CMSGHNKWSKIKNKKGEADAKRGAIFNKLSREIFVAAKAGGGD 57
Query: 116 PTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVL 174
P+ N L VL+KA+ ++PKD + R IK+A++ G + E YE YG GGV+I+V L
Sbjct: 58 PSMNASLRMVLDKARAANMPKDNINRAIKKATDVGDTTNYDEITYEGYGPGGVAILVHTL 117
Query: 175 TDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLLDIALDAG 232
TD R+ A + + GG M GSV + F R V++ D D+D +L++ LDAG
Sbjct: 118 TDNKKRTDANMHTIFTRNGGNMGSTGSVAYMFDRKGYIVIDRDNLDLDEDAMLEVILDAG 177
Query: 233 AEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTI 292
AED+ DD +++ + + + L+ + F S ++P +
Sbjct: 178 AEDL----KTSDDA--------FEIFTEPKEFPAVKEALQAQNLEFAQAQLS-MIPQNYV 224
Query: 293 EVDDEAMELNKELIAKLLELDDVDAVYTD 321
+DDE ++ + L+ KL + DDV VYT+
Sbjct: 225 SLDDEQADILETLVDKLEDDDDVQDVYTN 253
>gi|403252203|ref|ZP_10918513.1| hypothetical protein EMP_00422 [Thermotoga sp. EMP]
gi|418045360|ref|ZP_12683456.1| protein of unknown function DUF28 [Thermotoga maritima MSB8]
gi|33517115|sp|Q9WYT7.2|Y466_THEMA RecName: Full=Probable transcriptional regulatory protein TM_0466
gi|351678442|gb|EHA61589.1| protein of unknown function DUF28 [Thermotoga maritima MSB8]
gi|402812216|gb|EJX26695.1| hypothetical protein EMP_00422 [Thermotoga sp. EMP]
Length = 253
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 140/243 (57%), Gaps = 16/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAKK+K+++++ +E+I A ++GG N +N L A +E+A+ ++PK+ +E
Sbjct: 8 ANIKHRKMAQDAKKSKIFTKLIREIIVAAREGGGNIETNPRLRAAVERARAENMPKENIE 67
Query: 141 RNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IKR + + + + E +YE Y GGV++ + LTD R+ +R + GG +A+
Sbjct: 68 RAIKRGTGELEGVDYQEVIYEGYAPGGVAVYIRALTDNKNRTAQELRHLFNKYGGSLAES 127
Query: 200 GSVMFKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
GSV + F R V+ I D ++L+ IA+DAGAED+ + AE +++
Sbjct: 128 GSVSWIFERKGVIEISRDKVKDLEELMMIAIDAGAEDIKD------------AEDPIQII 175
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+ +N +++ +KL EAG +E + +P T++V + E E + L ++DDV V
Sbjct: 176 TAPENLSEVKSKLEEAG--YEVEAKVTFIPKNTVKVTGKDAEKVLEFLNALEDMDDVQEV 233
Query: 319 YTD 321
Y++
Sbjct: 234 YSN 236
>gi|373455426|ref|ZP_09547259.1| YebC/PmpR family DNA-binding regulatory protein [Dialister
succinatiphilus YIT 11850]
gi|371934871|gb|EHO62647.1| YebC/PmpR family DNA-binding regulatory protein [Dialister
succinatiphilus YIT 11850]
Length = 244
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 131/241 (54%), Gaps = 22/241 (9%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+KG DA +A++ +++ KE+ A + GG +P N L L KAK+ +VPK+ NI+R
Sbjct: 13 KKGKTDAIRARITTKISKEITIAARMGGGDPVGNMRLKLALTKAKQNNVPKE----NIQR 68
Query: 146 ASEKGQEA-----FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
A KG A F E YE YG GG +++VE TD R+ A +R GG + PG
Sbjct: 69 AIAKGVGAASGAGFDEVTYEGYGPGGAAVIVECNTDNRNRAAADIRHAFTHHGGSVGTPG 128
Query: 201 SVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
V + F++ + + AD+D ++ +ALDAGAEDV NED Y++ +T
Sbjct: 129 CVSWMFKKKGSIIVSKDAADEDTVMMVALDAGAEDV---SSNEDS---------YEITTT 176
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ + ++ L + GIP E + ++P ++++ +A + L A+L +LDDV VYT
Sbjct: 177 PEEFLTVSDALEKEGIPVEASEVA-MVPDNYVKLEGDAAQTMAHLTAELEDLDDVQEVYT 235
Query: 321 D 321
+
Sbjct: 236 N 236
>gi|345888536|ref|ZP_08839616.1| hypothetical protein HMPREF0178_02390 [Bilophila sp. 4_1_30]
gi|345040610|gb|EGW44850.1| hypothetical protein HMPREF0178_02390 [Bilophila sp. 4_1_30]
Length = 248
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 87/246 (35%), Positives = 135/246 (54%), Gaps = 23/246 (9%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKG QDAK+ K +++ KE+I A K GG +P SN+ L A + AK +++PKD +E
Sbjct: 8 ANIQHRKGRQDAKRGKEFTKAAKEIIIAAKNGG-DPASNSRLRAAIAAAKSINLPKDKIE 66
Query: 141 RNIKRASEKGQEA---FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
I++ + GQ+A IE YE YG GGV+++VE TD R+VA +R ++ GG M
Sbjct: 67 AAIRKGT--GQDAGGDIIEINYEGYGPGGVAVIVETATDNRNRTVAEIRHLMSKGGGSMG 124
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
+ G V +KF R V+ +DQL++ AL+AGA+D+ D+ D +++
Sbjct: 125 ENGCVSWKFERKGVIQFSKEKYTEDQLMEAALEAGADDL------RDEGD------VWEI 172
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDV 315
+ ++ + AG+ + +EL +P TT+EVD E I L + DDV
Sbjct: 173 QTAMADFNAVREAFEAAGLEMIS---AELNQVPQTTMEVDLETARKLLRFIELLEDNDDV 229
Query: 316 DAVYTD 321
VY+D
Sbjct: 230 QNVYSD 235
>gi|398341191|ref|ZP_10525894.1| hypothetical protein LkirsB1_18633 [Leptospira kirschneri serovar
Bim str. 1051]
gi|418694629|ref|ZP_13255664.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
kirschneri str. H1]
gi|421091569|ref|ZP_15552337.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
kirschneri str. 200802841]
gi|421106936|ref|ZP_15567499.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
kirschneri str. H2]
gi|421129010|ref|ZP_15589220.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
kirschneri str. 2008720114]
gi|409957568|gb|EKO16474.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
kirschneri str. H1]
gi|409999635|gb|EKO50323.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
kirschneri str. 200802841]
gi|410008030|gb|EKO61706.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
kirschneri str. H2]
gi|410359714|gb|EKP06773.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
kirschneri str. 2008720114]
Length = 249
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 138/238 (57%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A D+K+ +++R+GKE+ A K GG +P N L + KAK +++PKD +ER +++
Sbjct: 13 KKDAIDSKRGAIFTRVGKEITVAAKMGGGDPEGNPRLRLAILKAKSVNMPKDNIERAVRK 72
Query: 146 AS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMF 204
+ E + E +YE +G GG++I+V +TDK +R+ ++ ++ GG +A GSV
Sbjct: 73 GTGELEGVTYEECLYECFGPGGIAIMVSAVTDKKSRTTPEIKSILTKLGGSLATSGSVSR 132
Query: 205 KFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNY 264
F + V+ ++F+ +D+L+D+A+ GAEDVI NE + Y+V++T DNY
Sbjct: 133 LFEKKGVIVLEFSQISEDELVDVAVGGGAEDVI----NEGEV--------YRVITTPDNY 180
Query: 265 TDITTKLREAGIPFETDNGSELLPITTIEV-DDEAMELNKELIAKLLELDDVDAVYTD 321
+ L E G+ E ++ +P+ + E+ D E E +LI +L DDV +V ++
Sbjct: 181 ETVLHALNEKGLKSE-ESEIRYIPLVSSEIADKEVAEKVMKLIDQLDGHDDVTSVTSN 237
>gi|86751376|ref|YP_487872.1| hypothetical protein RPB_4273 [Rhodopseudomonas palustris HaA2]
gi|119391999|sp|Q2IS49.1|Y4273_RHOP2 RecName: Full=Probable transcriptional regulatory protein RPB_4273
gi|86574404|gb|ABD08961.1| Protein of unknown function DUF28 [Rhodopseudomonas palustris HaA2]
Length = 248
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 126/241 (52%), Gaps = 17/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA+++K +S++ +E+ A K G P+P N L A + A+ ++PKD +ER
Sbjct: 10 IMHRKGKQDAQRSKAFSKLAREITVAAKLGTPDPAMNPRLRAAVIAARAENMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A E + E YE YG GGV+++VE LTD R+ + +R GG + + GSV
Sbjct: 70 IKKAIGGDSENYDEIRYEGYGPGGVAVIVEALTDNRNRAASDIRSFFTKSGGNLGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R V+ A D +L+ A++AGA+DV +E ++V ++ D
Sbjct: 130 SFMFDRTGVIEYDADKASADDMLEAAIEAGADDVAS------------SESGHEVYASQD 177
Query: 263 NYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ D+ L F + L+ P T+ VDDE E +L+ L + DDV VY
Sbjct: 178 TFRDVAKALE---AKFGEARKAALIWKPQNTVAVDDETGEKLFKLMDHLNDHDDVQNVYA 234
Query: 321 D 321
+
Sbjct: 235 N 235
>gi|313894586|ref|ZP_07828149.1| DNA-binding regulatory protein, YebC/PmpR family [Veillonella sp.
oral taxon 158 str. F0412]
gi|313440776|gb|EFR59205.1| DNA-binding regulatory protein, YebC/PmpR family [Veillonella sp.
oral taxon 158 str. F0412]
Length = 244
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 90/251 (35%), Positives = 141/251 (56%), Gaps = 24/251 (9%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +KG DA KAK+ +++G+E+ A + GG +PT N L L+KA+E ++PKD
Sbjct: 6 KWANIKHKKGKTDALKAKMATKIGREITVAARMGGADPTGNMRLKLALQKARENNIPKD- 64
Query: 139 VERNIKRASEKG-----QEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCG 193
NI+RA +KG A+ E VYE YG GV++ VEV+TD R+ A VR G
Sbjct: 65 ---NIQRAIDKGVGATDMNAYEEIVYEGYGPAGVAVTVEVMTDNRNRAAADVRHAFSKQG 121
Query: 194 GKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAER 253
G + + G V + F+ V I D+D+L +AL+AGAED+ +EDD
Sbjct: 122 GNLGESGCVGWMFKSKGVFVIDKEGHDEDELTMLALEAGAEDL----KSEDDV------- 170
Query: 254 YYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVD-DEAMELNKELIAKLLEL 312
+++ +T ++Y + L +AGI + ++P TTIE+ D+A+++ K ++ L L
Sbjct: 171 -FEIYTTPEDYDAVEAALADAGIETVVAKIT-MIPDTTIELSGDDAVKMQK-MLDVLDNL 227
Query: 313 DDVDAVYTDQI 323
DDV VY + I
Sbjct: 228 DDVQNVYHNGI 238
>gi|254490177|ref|ZP_05103368.1| conserved hypothetical protein TIGR01033 [Methylophaga thiooxidans
DMS010]
gi|224464663|gb|EEF80921.1| conserved hypothetical protein TIGR01033 [Methylophaga thiooxydans
DMS010]
Length = 249
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 139/244 (56%), Gaps = 18/244 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKGAQDAK+ KL++++ +E+ A + GG +P SN L A ++KA ++ KD++E
Sbjct: 8 ANIQHRKGAQDAKRGKLFTKLIREITVAARMGGSDPASNPRLRAAIDKALGNNMTKDVIE 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R KR + + + E++ YE YG G +I+V+ +TD R+VAAVR V GG M
Sbjct: 68 RATKRGAGELEGVNYEEIRYEGYGPNGTAIMVDCMTDNKNRTVAAVRNVFTKRGGNMGTD 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
G V F F + ++++ +++ +++ AL+AGAED++ N+D + V +
Sbjct: 128 GCVAFLFNKKGIISLP-AGLEEETVMEAALEAGAEDIV---TNDDGS--------IDVFT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTI--EVDDEAMELNKELIAKLLELDDVDA 317
T D+Y + L EAG+ E+ + + P TT+ EVDD + +I ELDDV
Sbjct: 176 TPDDYAAVKDALDEAGLEAESSQVT-MHPDTTVSLEVDDAKKAIG--MIEAFEELDDVQE 232
Query: 318 VYTD 321
VY++
Sbjct: 233 VYSN 236
>gi|320534406|ref|ZP_08034889.1| conserved hypothetical protein TIGR01033 [Actinomyces sp. oral
taxon 171 str. F0337]
gi|320133381|gb|EFW25846.1| conserved hypothetical protein TIGR01033 [Actinomyces sp. oral
taxon 171 str. F0337]
Length = 254
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 89/238 (37%), Positives = 127/238 (53%), Gaps = 16/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++R+ K + A + GG +PT N L ++KAK+ VP D + R +KR
Sbjct: 13 KKAAIDAKRGKLFARLIKNIEVAARTGGGDPTGNPTLFDAIQKAKKNSVPADNITRAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S E G + +YE YG GGV+ +VE LTD R+ + VR GG +ADPGSV
Sbjct: 73 GSGEEAGGADWQTIMYEGYGPGGVAFLVECLTDNRNRAASDVRVAFSRNGGNLADPGSVA 132
Query: 204 FKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
+ F R VV + D D+D +L LDAGAE+V ED E +++ S
Sbjct: 133 YNFTRKGVVEVAKADGVDEDSILMAVLDAGAEEV-----------EDVGES-FEIYSEPG 180
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ + T L EAG+ +++ + + T +EVD E LI L + DDV VYT
Sbjct: 181 DIVAVRTALTEAGMDYDSAE-VQFVAGTKVEVDVEGARKVFRLIDALEDSDDVQNVYT 237
>gi|257455417|ref|ZP_05620652.1| conserved hypothetical protein [Enhydrobacter aerosaccus SK60]
gi|257447379|gb|EEV22387.1| conserved hypothetical protein [Enhydrobacter aerosaccus SK60]
Length = 249
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 142/246 (57%), Gaps = 22/246 (8%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK QDA K K+++++ +E++SA K+G P+P SN L A +EKA +++ KD V+
Sbjct: 8 ANIKHRKAKQDAAKGKIFTKIIRELVSAAKQGDPDPASNPRLRAAVEKANSVNMTKDTVK 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I+R + G ++++ YE YG GGV+++VE +TD + R+V VR GG +
Sbjct: 68 RAIERGAGGGDNDNMQEITYEGYGLGGVAVIVETMTDNLNRTVGEVRHAFSKNGGNLGTS 127
Query: 200 GSVMFKFRRARVVNIKFTDAD-KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
GSV + F + I F D +D ++++AL+AGA D+ E++ D VV
Sbjct: 128 GSVAYMFSKRG--EITFDDVSLEDTIMEVALEAGATDI------ENNGDS------ITVV 173
Query: 259 STSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDD--EAMELNKELIAKLLELDDV 315
+ +N+ D+ L +AG+ ++DN + P T +V D +A ++ K +I L +LDDV
Sbjct: 174 TEPENFGDVMDALEKAGL--KSDNAEVTMSPSTMADVTDVEDAKKIMK-MIDMLEDLDDV 230
Query: 316 DAVYTD 321
VYT+
Sbjct: 231 QEVYTN 236
>gi|333375746|ref|ZP_08467547.1| YebC like protein [Kingella kingae ATCC 23330]
gi|332969719|gb|EGK08733.1| YebC like protein [Kingella kingae ATCC 23330]
Length = 241
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 135/243 (55%), Gaps = 15/243 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +K QDAK+ K+++++ KE+ A K+GG +P +N L ++KA + ++PKD
Sbjct: 6 KWANIQHKKARQDAKRGKIFTKLIKEITIAAKQGGGDPNANPRLRLAMDKAWDNNMPKDN 65
Query: 139 VERNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
V+R I + + + +IE YE YG GG +++V+ +TD TR+VA VR GG +
Sbjct: 66 VQRAIDKGTGNLEGVDYIELRYEGYGIGGAAVMVDCMTDNKTRTVADVRHAFTKHGGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G V F F + +T+AD+D L++ AL+AGAEDV+ TD+D +V
Sbjct: 126 TDGCVAFNFEHQGY--LVYTNADEDALMEAALEAGAEDVL--------TDDDGV---IEV 172
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
++ ++ I L +AG E D+ + T E+ + E ++LI L +LDDV
Sbjct: 173 ITAPADWAQIKITLEQAGFKAE-DSDVTMRAQNTTELSGDDAEKMQKLIDALEDLDDVQN 231
Query: 318 VYT 320
VYT
Sbjct: 232 VYT 234
>gi|170288270|ref|YP_001738508.1| hypothetical protein TRQ2_0469 [Thermotoga sp. RQ2]
gi|226706222|sp|B1L927.1|Y469_THESQ RecName: Full=Probable transcriptional regulatory protein TRQ2_0469
gi|170175773|gb|ACB08825.1| protein of unknown function DUF28 [Thermotoga sp. RQ2]
Length = 253
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 140/245 (57%), Gaps = 20/245 (8%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAKK+K+++++ +E+I A ++GG N +N L A +E+A+ ++PK+ +E
Sbjct: 8 ANIKHRKMAQDAKKSKIFTKLIREIIVAAREGGGNIETNPRLRAAVERARAENMPKENIE 67
Query: 141 RNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IKR + + + + E +YE Y GGV++ + LTD R+ +R + GG +A+
Sbjct: 68 RAIKRGTGELEGVDYQEVIYEGYAPGGVAVYIRALTDNKNRTAQELRHLFNKYGGSLAES 127
Query: 200 GSVMFKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDV--IEPPVNEDDTDEDRAERYYK 256
GSV + F R V+ I D ++L+ IA+DAGAED+ E P+ +
Sbjct: 128 GSVSWIFERKGVIEISRDKVKDLEELMMIAIDAGAEDIKDTEDPI--------------Q 173
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
+++ +N +++ +KL EAG +E + +P T++V + E E + L ++DDV
Sbjct: 174 IITAPENLSEVKSKLEEAG--YEVEAKVTFIPKNTVKVTGKDAEKVLEFLNALEDMDDVQ 231
Query: 317 AVYTD 321
VY++
Sbjct: 232 EVYSN 236
>gi|421186767|ref|ZP_15644149.1| hypothetical protein AWRIB418_1364 [Oenococcus oeni AWRIB418]
gi|399965571|gb|EJO00143.1| hypothetical protein AWRIB418_1364 [Oenococcus oeni AWRIB418]
Length = 240
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 135/241 (56%), Gaps = 16/241 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ ++ A K GG +P++N L V++KAK ++PKD V+R
Sbjct: 10 IQGRKNAQDAKRGKIFQKISHDLYVAAKAGGADPSANASLRLVMDKAKAANMPKDNVQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ +A+ G F E YE Y GG++++VE TD I R+V+ VR GG + GSV
Sbjct: 70 LDKATGAGDVKFEEATYEGYAPGGIAVLVETSTDNINRTVSNVRNSFNHHGGSLGTSGSV 129
Query: 203 MFKF-RRARVVNIKFTDAD--KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
F+F RR V + + + +DQ+++ A++AGAEDV T +D +++ S
Sbjct: 130 SFQFDRRGHFVIDRRSHPNITEDQVMEDAIEAGAEDV--------QTSDDA----FEIFS 177
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
++ + L + G ++ ++P +EV + E ++LI +L + DDV AVY
Sbjct: 178 QPADFAAVEGALTDKGYDL-AESEITMIPQNPVEVPEADQEKFEKLIDELEDNDDVLAVY 236
Query: 320 T 320
T
Sbjct: 237 T 237
>gi|337286113|ref|YP_004625586.1| hypothetical protein Thein_0743 [Thermodesulfatator indicus DSM
15286]
gi|335358941|gb|AEH44622.1| protein of unknown function DUF28 [Thermodesulfatator indicus DSM
15286]
Length = 252
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 151/246 (61%), Gaps = 21/246 (8%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
++I +K AQDAK+ K+++++ +E++ A + GG +P++N L A ++ AK ++PK+ +E
Sbjct: 8 AQIKRKKAAQDAKRGKIFTKLIREIMVAARMGGGDPSANPRLRAAIQAAKAANMPKENIE 67
Query: 141 RNIKRASEKGQE---AFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
R I++ + GQE + E YE YG GGV+++++ +TD R+V+ +R + CGG +A
Sbjct: 68 RAIRKGT--GQEPGTTWEEVTYEGYGPGGVAVLIKSVTDNKRRTVSELRHIFSKCGGNLA 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
+PG+V + F + ++ + + D+++LL+ AL+AGAEDV E E +++
Sbjct: 126 EPGAVAWVFEQKGLILVNRNETDEEKLLEAALEAGAEDVRE------------YESEFEI 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDE--AMELNKELIAKLLELDDV 315
++ ++ ++ L EAG ++ + ++P +T++++DE A ++ + L+ L + DDV
Sbjct: 174 ITLPEDLENVKKALEEAGFVIQSARVT-MVPKSTVKIEDEKTAQQMLR-LMETLEDHDDV 231
Query: 316 DAVYTD 321
VY +
Sbjct: 232 QQVYAN 237
>gi|115526759|ref|YP_783670.1| hypothetical protein RPE_4771 [Rhodopseudomonas palustris BisA53]
gi|122294482|sp|Q07H94.1|Y4771_RHOP5 RecName: Full=Probable transcriptional regulatory protein RPE_4771
gi|115520706|gb|ABJ08690.1| protein of unknown function DUF28 [Rhodopseudomonas palustris
BisA53]
Length = 248
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 126/241 (52%), Gaps = 17/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA+K+KL+S++ +E+ A K G P+P N L + + A++ ++PKD +ER
Sbjct: 10 IMHRKGRQDAQKSKLFSKLAREITVAAKLGAPDPAMNARLRSAIIAARQENMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A + + E YE YG GGV+++VE LTD R+ + +R GG + + GSV
Sbjct: 70 IKKAIGSDGDNYDEMRYEGYGPGGVAVIVEALTDNRNRAASDIRSYFTKSGGNLGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F ++ A D +LD A++AGA+DV+ ++V ++ D
Sbjct: 130 AFMFDHTGLIEYDAGVASADDVLDAAIEAGADDVLSSDTG------------HEVYASHD 177
Query: 263 NYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ ++ L F + L+ P T+ VDDE E +LI L E DDV VY
Sbjct: 178 TFREVAKALE---AKFGEARKAALIWKPQNTVPVDDETGEKLLKLIDLLNEHDDVQNVYA 234
Query: 321 D 321
+
Sbjct: 235 N 235
>gi|254557054|ref|YP_003063471.1| hypothetical protein JDM1_1887 [Lactobacillus plantarum JDM1]
gi|300768047|ref|ZP_07077953.1| glucose-1-phosphate adenylyltransferase [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|380032985|ref|YP_004889976.1| YebC/PmpR family DNA-binding regulatory protein [Lactobacillus
plantarum WCFS1]
gi|418275780|ref|ZP_12891103.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
plantarum subsp. plantarum NC8]
gi|448821760|ref|YP_007414922.1| putative transcriptional regulatory protein [Lactobacillus
plantarum ZJ316]
gi|33517009|sp|Q88V33.1|Y2253_LACPL RecName: Full=Probable transcriptional regulatory protein lp_2253
gi|254045981|gb|ACT62774.1| conserved hypothetical protein [Lactobacillus plantarum JDM1]
gi|300494396|gb|EFK29558.1| glucose-1-phosphate adenylyltransferase [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|342242228|emb|CCC79462.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
plantarum WCFS1]
gi|376009331|gb|EHS82660.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
plantarum subsp. plantarum NC8]
gi|448275257|gb|AGE39776.1| putative transcriptional regulatory protein [Lactobacillus
plantarum ZJ316]
Length = 242
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 129/242 (53%), Gaps = 21/242 (8%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ AVK GGP+P SN L V++KAK ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKVFQKISRELYMAVKAGGPDPDSNAQLRLVMDKAKAANMPKDNIKRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ + S G E + E YE YG GG++++V LTD R+ AAVR GG +A G+V
Sbjct: 70 VDKGSGSGAENYEEVTYEGYGPGGIAVLVHALTDNKNRTAAAVRSAFTHHGGALAATGAV 129
Query: 203 MFKFRRARVVNIKFTDADKDQ---LLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
+ F R + I D D D+ L+D+ LDAG +D+ ++ +++ +
Sbjct: 130 SYMFDRKGYIVISREDLDTDEDTMLMDV-LDAGGDDL------------QSSDEAFEIYT 176
Query: 260 TSDNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ L G ET +EL +P +V + +E + +I +L + DDV
Sbjct: 177 DPKQLAAVRDALEANGYKLET---AELTMIPENLTDVPADKVEKLQHMIDELEDNDDVSE 233
Query: 318 VY 319
VY
Sbjct: 234 VY 235
>gi|289766382|ref|ZP_06525760.1| conserved hypothetical protein [Fusobacterium sp. D11]
gi|289717937|gb|EFD81949.1| conserved hypothetical protein [Fusobacterium sp. D11]
Length = 249
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 135/247 (54%), Gaps = 19/247 (7%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RKGAQD K+AKL+++ G+E+ A K+GG +P N L +EKAK ++PKDI
Sbjct: 6 KWNNIQHRKGAQDKKRAKLFTKFGRELTIAAKEGGGDPNFNPRLRLAIEKAKAGNMPKDI 65
Query: 139 VERNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ER IK+ S + + F E YE YG G + +VE +TD R+ + +R G +
Sbjct: 66 LERAIKKGSGELEGVDFTEMRYEGYGPAGTAFIVEAVTDNKNRTASEIRMTFTRKDGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G+V + F++ ++ +K D D+ + AL+AGAED V EDD Y++V
Sbjct: 126 ADGAVSWMFKKKGIITVKSEGIDADEFMMAALEAGAED-----VEEDDG-------YFEV 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIA---KLLELDD 314
+ + + L+ G +E S ++P T+E+ D +E K+++A L +LDD
Sbjct: 174 TTEYTEFQTVLENLKNVGYQYEEAEIS-MIPENTVEITD--LETAKKVMALYDALEDLDD 230
Query: 315 VDAVYTD 321
VY++
Sbjct: 231 SQNVYSN 237
>gi|377556723|ref|ZP_09786411.1| UPF0082 protein [Lactobacillus gastricus PS3]
gi|376167784|gb|EHS86607.1| UPF0082 protein [Lactobacillus gastricus PS3]
Length = 243
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 126/239 (52%), Gaps = 15/239 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +++ A + G P+P +N L V++KA+ ++PK ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKISRDLYQAARAGDPDPANNPQLRLVMDKARAANMPKQNIQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
I +A+ G F E YE YG GGV+++V LTD R+ +A+R GG + GSV
Sbjct: 70 IDKATGAGGANFEEITYEGYGPGGVAVMVSCLTDNKNRTASAIRSAFTHSGGSLGANGSV 129
Query: 203 MFKFRRARVVNIKFTDADK--DQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R ++ I D DK D++L ALDAGA+D+ E + + +
Sbjct: 130 SYMFNRQGLIEILREDLDKDEDEMLMDALDAGADDM------------QADEEMFHIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ T + L+ G ET + ++P EV + + + LI +L E DDV VY
Sbjct: 178 PSSMTAVRDALQADGYELETAEVT-MIPENKTEVPSDKVSQYQHLIDELEENDDVADVY 235
>gi|293604474|ref|ZP_06686879.1| YebC like protein [Achromobacter piechaudii ATCC 43553]
gi|292817055|gb|EFF76131.1| YebC like protein [Achromobacter piechaudii ATCC 43553]
Length = 243
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 89/244 (36%), Positives = 131/244 (53%), Gaps = 16/244 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RKG QDAK+ KL++++ +E+ A + GGP+P SN L +KA + ++PKD
Sbjct: 6 KWANIQHRKGRQDAKRGKLWTKIIREITVAARAGGPDPDSNPRLRMAWDKATDANMPKDN 65
Query: 139 VERNIKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
++R I+R A +A+ E YE YG GG +++V+ +TD TR+VA VR GG +
Sbjct: 66 IQRAIQRGAGGADGDAYEEVRYEGYGIGGAAVIVDCMTDNRTRTVAEVRHAFAKNGGNLG 125
Query: 198 DPGSVMFKFRR-ARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
GSV F F+ + V T DK +++ ALDAGAEDV TDE E +
Sbjct: 126 QEGSVAFMFKHCGQFVFAPGTPEDK--VMEAALDAGAEDVT--------TDE---EGVIE 172
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
VV +Y + EAG+ E D G + + E+ E ++L+ L LDDV
Sbjct: 173 VVCAPADYAAVRKAFDEAGLKAEVD-GIVMKALNETELAGEDAIKMQKLLDALEGLDDVQ 231
Query: 317 AVYT 320
VYT
Sbjct: 232 EVYT 235
>gi|157691527|ref|YP_001485989.1| hypothetical protein BPUM_0743 [Bacillus pumilus SAFR-032]
gi|167016788|sp|A8FB12.1|Y743_BACP2 RecName: Full=Probable transcriptional regulatory protein BPUM_0743
gi|157680285|gb|ABV61429.1| hypothetical protein BPUM_0743 [Bacillus pumilus SAFR-032]
Length = 239
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 130/244 (53%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K ++DA +++Y++ G+E+ A K+G PNP SN L VLE+AK VP
Sbjct: 1 MGRKWNNIKEKKASKDASTSRIYAKFGREIYVAAKQGEPNPESNQALRFVLERAKTYSVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K IV+R I++A +E F E YE +G G ++V+ LT+ + R+ + VR GG
Sbjct: 61 KHIVDRAIEKAKGGAEENFDELRYEGFGPNGSMVIVDALTNNVNRTASDVRAAFGKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
M GSV + F + V+ ++ ++ L + D D++E ED+T
Sbjct: 121 MGVSGSVAYMFDQTAVIGVEGKSEEETLELLMEADVDVRDIME----EDET--------V 168
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
V + D + + ++AG+ T +LP + +DDE+ E ++LI L EL+DV
Sbjct: 169 IVYAEPDQFHQVQEAFKQAGVEEFTVAEITMLPQNEVTLDDESKEQFEKLIDVLEELEDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QQVY 232
>gi|294508698|ref|YP_003572757.1| hypothetical protein SRM_02884 [Salinibacter ruber M8]
gi|294345027|emb|CBH25805.1| conserved hypothetical protein containing DUF28 [Salinibacter ruber
M8]
Length = 257
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 136/244 (55%), Gaps = 14/244 (5%)
Query: 78 RRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKD 137
R+ +K+ +K D +K+K+++R+ +E+ A ++GG +P +N L+ LE+A+E D+ KD
Sbjct: 6 RKWAKVKRKKQKDDRRKSKVWARLSQEIEKAAREGGGDPDANVALSQALERAREEDMAKD 65
Query: 138 IVERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKM 196
+ER IKR + + +E EKV YE Y GV++ VE T+ I R+V +R + D GG +
Sbjct: 66 TIERAIKRGTGELEEEGREKVTYEGYAPHGVAVFVEGETENINRTVKDLRNLFSDHGGNL 125
Query: 197 ADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
GSV + F + I D+ L ++A++AGAE+V D+TD Y
Sbjct: 126 GKDGSVAYLFEQKGRFEIAADATDEMTLFEVAVEAGAEEV-------DETD-----GAYV 173
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
V + D + D+ L EAG+P E N P TT+ + + + + LI K+ +L DV
Sbjct: 174 VTTDRDAFADVGEALDEAGLPVEA-NALVRAPATTVALAPDERDAVRGLIEKINDLRDVT 232
Query: 317 AVYT 320
+VYT
Sbjct: 233 SVYT 236
>gi|365853706|ref|ZP_09393971.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
parafarraginis F0439]
gi|363711864|gb|EHL95570.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
parafarraginis F0439]
Length = 245
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 86/239 (35%), Positives = 126/239 (52%), Gaps = 15/239 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +++ A K G P+P +N L V+EKA+ ++PKD V+R
Sbjct: 10 IQGRKNAQDAKRGKIFQKISRDLYQAAKAGDPDPENNPQLRLVMEKARAANMPKDNVQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
I +AS G F E YE YG GG +I+V LTD R+ A VR GG + GSV
Sbjct: 70 IDKASGLGGAKFEEITYEGYGPGGTAIMVSALTDNKNRTAAEVRSAFTHHGGSLGASGSV 129
Query: 203 MFKFRRARVVNIKFTDADK--DQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R + I DK D +L ALDAGA+D+ TD++ +++ +
Sbjct: 130 SYMFDRKGYIVILRDGLDKTEDDMLMDALDAGADDMKT-------TDDE-----FQIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ D+ L++AG +T + P TT EV + + LI +L DDV VY
Sbjct: 178 PSSLGDVRDALQKAGYDLDTAE-VRMFPETTTEVPADKTQQYTGLIDELENNDDVQDVY 235
>gi|342213643|ref|ZP_08706366.1| DNA-binding regulatory protein, YebC/PmpR family [Veillonella sp.
oral taxon 780 str. F0422]
gi|341597731|gb|EGS40270.1| DNA-binding regulatory protein, YebC/PmpR family [Veillonella sp.
oral taxon 780 str. F0422]
Length = 243
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 90/246 (36%), Positives = 136/246 (55%), Gaps = 18/246 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
S I RKG DA KAK+ +++ +E+ AVK GG +PT N L L+KA+E ++PKD ++
Sbjct: 8 SNIKHRKGKNDALKAKVTTKISREITVAVKAGGTDPTGNMRLKLALQKARENNIPKDNIQ 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I + + G E++ YE YG GG +I+VEV+TD R+ A VR GG + +
Sbjct: 68 RAIDKGAGAGDANNYEEITYEGYGPGGAAILVEVMTDNRNRAAADVRHAFSKRGGNLGES 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F+R V I D++ L +ALDAGAED+ EDD + + +
Sbjct: 128 GSVNWMFKRKGVFVIPQEGNDEETLTLLALDAGAEDIKV----EDDV--------FVIYT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEV-DDEAMELNKELIAKLLELDDVDA 317
D+Y + L EA I TD ++P T +E+ D+A+ + + ++ L +LDDV
Sbjct: 176 LPDDYDAVEAALAEASIA--TDMAQITMVPDTNMELTGDDAVNMQR-VLDMLEDLDDVQD 232
Query: 318 VYTDQI 323
VY + I
Sbjct: 233 VYHNAI 238
>gi|338730388|ref|YP_004659780.1| hypothetical protein Theth_0596 [Thermotoga thermarum DSM 5069]
gi|335364739|gb|AEH50684.1| protein of unknown function DUF28 [Thermotoga thermarum DSM 5069]
Length = 253
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 142/243 (58%), Gaps = 16/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAK+++L++++ +E+I A + GG NP +N L A +EKA+E +PK+ +E
Sbjct: 8 ANIKHRKMAQDAKRSQLFTKLIREIIVAARLGGGNPETNPRLRAAIEKAREASMPKENIE 67
Query: 141 RNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
+ IKR + + + A + E +YE Y GGV++ + LTD R+ +R V+ GG +AD
Sbjct: 68 KAIKRGTGELEGADYQEIIYEAYAPGGVALYIRTLTDNKNRTAQELRHVLSRHGGSLADL 127
Query: 200 GSVMFKFRRARVVNIKFTD-ADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
G+V + F R V+ + + A+ ++L+ +A+DAGAED+ DD+D+ +++
Sbjct: 128 GAVSWIFERKGVITVPRSQVANVEELMMLAIDAGAEDI-------DDSDDP-----IRII 175
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+ D+ + L + G ++++ +P T++V + E L+ L ++DDV V
Sbjct: 176 TAPDDLMKVKEVLDQNG--YKSEASISYIPKNTVKVSGKDAERVLALLNALEDMDDVQEV 233
Query: 319 YTD 321
Y++
Sbjct: 234 YSN 236
>gi|398311640|ref|ZP_10515114.1| hypothetical protein BmojR_20127 [Bacillus mojavensis RO-H-1]
Length = 239
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 138/242 (57%), Gaps = 17/242 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RK AQDAK+ K++ ++ KE+ A K+GG +P +N+ L V+EKAK ++P + ++R
Sbjct: 10 IQKRKNAQDAKRGKIFMKLAKEIYVAAKQGGADPEANSALRLVIEKAKGANMPNENIDRA 69
Query: 143 IKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
+K+A+ ++ E++ YE YG G++++VE LTD R+ VR GG + + G
Sbjct: 70 LKKAAGSQDDSSYEEITYEGYGPSGIAVMVECLTDNKNRTATNVRTAFNKNGGSLGESGC 129
Query: 202 VMFKFRRARVVNIKFTD--ADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
V F F R + I T+ ++D+L+ ++AG E++ E Y++V+S
Sbjct: 130 VAFLFERKGYIAIDRTERQIEEDELMLDVIEAGGEEL------------RTEEEYFEVLS 177
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ + + L EA P ++ + ++P T +VDDEA+E ++LI L + DDV AVY
Sbjct: 178 APERFEKVKAAL-EADYPVDSAEVT-MIPKTYADVDDEAVEKLEKLIDTLEDDDDVQAVY 235
Query: 320 TD 321
T+
Sbjct: 236 TN 237
>gi|163790272|ref|ZP_02184705.1| hypothetical protein CAT7_05109 [Carnobacterium sp. AT7]
gi|159874547|gb|EDP68618.1| hypothetical protein CAT7_05109 [Carnobacterium sp. AT7]
Length = 241
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 132/242 (54%), Gaps = 16/242 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
S I GRK AQDAK+ K++ ++ +E+ AVK GGP+P+ N L V++KAK ++P D VE
Sbjct: 8 SNIQGRKNAQDAKRGKVFQKISREIYMAVKSGGPDPSINPSLRMVMDKAKSNNMPNDNVE 67
Query: 141 RNIKRASEKGQ-EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+ S G+ E + E +YE YG G +++V LTD + R+ VR GG + +
Sbjct: 68 RAIKKGSATGENENYDEVIYEGYGPKGTAVLVHTLTDNLNRTGTNVRVAFNKNGGSLGEK 127
Query: 200 GSVMFKFRRARVVNI--KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV + F R + I + D D+D +L L+AG +++ + ++ +++
Sbjct: 128 GSVSYMFDRKGYIAIEREGLDIDEDTMLMSVLEAGGDEM------------ETSDEVFEI 175
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ + D+ L + G + ++P TT+E+ ++ L ++I KL E DDV
Sbjct: 176 YTDPSDLPDVRDALEKEGYKLAQAEVT-MIPQTTVELPEDKKALFNQMIDKLEEDDDVSE 234
Query: 318 VY 319
V+
Sbjct: 235 VF 236
>gi|335036736|ref|ZP_08530059.1| hypothetical protein AGRO_4067 [Agrobacterium sp. ATCC 31749]
gi|333791884|gb|EGL63258.1| hypothetical protein AGRO_4067 [Agrobacterium sp. ATCC 31749]
Length = 248
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 130/240 (54%), Gaps = 15/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QD+ ++K++S++ +E+ A K G P+P N L ++ AK +PKD +ER
Sbjct: 10 IMHRKGKQDSVRSKMFSKLAREITVAAKTGMPDPNMNARLRLAIQNAKAQSMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+AS E + E YE YG GGV++VVE LTD R+ + VR + GG + + GSV
Sbjct: 70 IKKASGADSENYDEVRYEGYGPGGVAVVVEALTDNRNRTASNVRSIFTKAGGALGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R + K D D++++ A++AGA+DV + +E + ++ +
Sbjct: 130 SFSFDRVGEITYKAEVGDADKIMEAAIEAGADDV------------ESSEDGHTIICGFE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELL-PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+++ L G+ E ++ + P T+ VD+E + +LI L + DDV VY++
Sbjct: 178 AMNEVSKALE--GVLGEAESVKAIWKPQNTVPVDEEKAQSLMKLIDNLEDDDDVQNVYSN 235
>gi|403515367|ref|YP_006656187.1| hypothetical protein R0052_08060 [Lactobacillus helveticus R0052]
gi|403080805|gb|AFR22383.1| hypothetical protein R0052_08060 [Lactobacillus helveticus R0052]
Length = 242
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 126/240 (52%), Gaps = 15/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQD+K+ K++ ++ +E+ A K GGP+P N L V++KA+ ++PKD ++R
Sbjct: 10 IQGRKNAQDSKRGKIFQKLSREIYMAAKSGGPDPDGNPTLRMVIDKARSNNMPKDNIKRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A +E + E YE Y GGV++ VE LTD R+ + VR GG + GSV
Sbjct: 70 IKKAEGGSEEHYDEITYEGYAPGGVAVFVEALTDNKNRTASDVRVAFTRNGGSLGATGSV 129
Query: 203 MFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R V++ TDAD+DQ+L +DAG +D+ DD +++ +
Sbjct: 130 AYMFDRKGYIVIDRSTTDADEDQVLLDVMDAGGDDL----QTSDDA--------FEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ D+ L + G D ++P T V + E + L+ L + DDV VYT
Sbjct: 178 PKQFADVRDALIKDGYKL-ADAELTMIPQNTTPVPADKKEQFEHLVDALEDSDDVQNVYT 236
>gi|400294330|ref|ZP_10796125.1| DNA-binding regulatory protein, YebC/PmpR family [Actinomyces
naeslundii str. Howell 279]
gi|399900547|gb|EJN83507.1| DNA-binding regulatory protein, YebC/PmpR family [Actinomyces
naeslundii str. Howell 279]
Length = 254
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 127/238 (53%), Gaps = 16/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++R+ K + A + GG +PT N L ++KAK+ VP D + R +KR
Sbjct: 13 KKAAIDAKRGKLFARLIKNIEVAARTGGGDPTGNPTLFDAIQKAKKNSVPADNITRAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S E G + +YE YG GGV+ +VE LTD R+ + VR GG +ADPGSV
Sbjct: 73 GSGEEAGGADWQTIMYEGYGPGGVAFLVECLTDNRNRAASDVRVAFSRNGGNLADPGSVA 132
Query: 204 FKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
+ F R VV + D D+D +L LDAGAE+V ED E +++ S
Sbjct: 133 YNFTRKGVVEVAKADGVDEDSILMAVLDAGAEEV-----------EDMGES-FEIYSEPS 180
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ + T L EAG+ +++ + + T +EVD + LI L + DDV VYT
Sbjct: 181 DIVAVRTALTEAGMDYDSAE-VQFVAGTKVEVDVDGARKVFRLIDALEDSDDVQNVYT 237
>gi|418404641|ref|ZP_12978091.1| hypothetical protein SM0020_31052 [Sinorhizobium meliloti
CCNWSX0020]
gi|359501395|gb|EHK74007.1| hypothetical protein SM0020_31052 [Sinorhizobium meliloti
CCNWSX0020]
Length = 248
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 131/239 (54%), Gaps = 13/239 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++S++ +E+ A K G P+PT N L ++ AK +PKD +ER
Sbjct: 10 IMHRKGRQDAVRSKMFSKLAREITVAAKTGLPDPTMNPRLRLAIQNAKAQSMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+K+A+ E + E YE YG GGV+++VE LTD R+ + VR GG + + GSV
Sbjct: 70 VKKAAGGDAENYEEVRYEGYGPGGVAVIVEALTDNRNRTASNVRSTFTKAGGALGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R + K + D D++++ A++AGA+DV +TDE+ + + +
Sbjct: 130 SFSFDRVGEITYKLSAGDADKVMEAAIEAGADDV--------ETDEEG----HTITCGFE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ +++ L A ET + P T+ VD+E + +LI L + DDV VY++
Sbjct: 178 DIGEVSKALEGALGEAETVK-AVWKPQNTVPVDEEKAQSLMKLIDNLEDDDDVQNVYSN 235
>gi|308181048|ref|YP_003925176.1| hypothetical protein LPST_C1866 [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|308046539|gb|ADN99082.1| hypothetical protein LPST_C1866 [Lactobacillus plantarum subsp.
plantarum ST-III]
Length = 242
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 129/242 (53%), Gaps = 21/242 (8%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ AVK GGP+P SN L V++KAK ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKVFQKISRELYMAVKAGGPDPDSNAQLRLVMDKAKAANMPKDNIKRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ + S G E + E YE YG GG++++V LTD R+ AAVR GG +A G+V
Sbjct: 70 VDKGSGSGAENYEEVTYEGYGPGGIAVLVHALTDNKNRTAAAVRSAFTHHGGALAATGAV 129
Query: 203 MFKFRRARVVNIKFTDADKDQ---LLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
+ F R + I D D D+ L+D+ LDAG +D+ ++ +++ +
Sbjct: 130 SYMFDRKGYIVISREDLDTDEDTMLIDV-LDAGGDDL------------QSSDEAFEIYT 176
Query: 260 TSDNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ L G ET +EL +P +V + +E + +I +L + DDV
Sbjct: 177 DPKQLAAVRDALEANGYKLET---AELTMIPENLTDVPADKVEKLQHMIDELEDNDDVSE 233
Query: 318 VY 319
VY
Sbjct: 234 VY 235
>gi|15966506|ref|NP_386859.1| hypothetical protein SMc03969 [Sinorhizobium meliloti 1021]
gi|334317510|ref|YP_004550129.1| hypothetical protein Sinme_2808 [Sinorhizobium meliloti AK83]
gi|384530636|ref|YP_005714724.1| hypothetical protein [Sinorhizobium meliloti BL225C]
gi|384537338|ref|YP_005721423.1| hypothetical protein SM11_chr2917 [Sinorhizobium meliloti SM11]
gi|407721819|ref|YP_006841481.1| hypothetical protein BN406_02610 [Sinorhizobium meliloti Rm41]
gi|433614585|ref|YP_007191383.1| DNA-binding regulatory protein, YebC/PmpR family [Sinorhizobium
meliloti GR4]
gi|33517136|sp|Q92M88.1|Y2753_RHIME RecName: Full=Probable transcriptional regulatory protein R02753
gi|15075777|emb|CAC47332.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
gi|333812812|gb|AEG05481.1| UPF0082 protein yeeN [Sinorhizobium meliloti BL225C]
gi|334096504|gb|AEG54515.1| UPF0082 protein yeeN [Sinorhizobium meliloti AK83]
gi|336034230|gb|AEH80162.1| hypothetical protein SM11_chr2917 [Sinorhizobium meliloti SM11]
gi|407320051|emb|CCM68655.1| hypothetical protein BN406_02610 [Sinorhizobium meliloti Rm41]
gi|429552775|gb|AGA07784.1| DNA-binding regulatory protein, YebC/PmpR family [Sinorhizobium
meliloti GR4]
Length = 248
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 131/239 (54%), Gaps = 13/239 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++S++ +E+ A K G P+PT N L ++ AK +PKD +ER
Sbjct: 10 IMHRKGRQDAVRSKMFSKLAREITVAAKTGLPDPTMNPRLRLAIQNAKAQSMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+K+A+ E + E YE YG GGV+++VE LTD R+ + VR GG + + GSV
Sbjct: 70 VKKAAGGDAENYEEVRYEGYGPGGVAVIVEALTDNRNRTASNVRSTFTKAGGALGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R + K + D D++++ A++AGA+DV +TDE+ + + +
Sbjct: 130 SFSFDRVGEITYKLSAGDADKVMEAAIEAGADDV--------ETDEEG----HTITCGFE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ +++ L A ET + P T+ VD+E + +LI L + DDV VY++
Sbjct: 178 DIGEVSKALEGALGEAETVK-AVWKPQNTVPVDEEKAQSLMKLIDNLEDDDDVQNVYSN 235
>gi|90418962|ref|ZP_01226873.1| conserved hypothetical protein [Aurantimonas manganoxydans
SI85-9A1]
gi|90337042|gb|EAS50747.1| conserved hypothetical protein [Aurantimonas manganoxydans
SI85-9A1]
Length = 249
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 125/240 (52%), Gaps = 13/240 (5%)
Query: 82 KIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVER 141
I RKG QDA ++K++S++ +E++ A K G P+P+ N L + AK +PKD ++R
Sbjct: 9 NIMHRKGRQDAVRSKMFSKLAREIVVAAKSGLPDPSMNARLRLAINNAKAQSMPKDNIDR 68
Query: 142 NIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+AS E + E YE YG GGV+I+VE LTD R+ + VR GG M + GS
Sbjct: 69 AIKKASGGDSENYDEVRYEGYGPGGVAIIVEALTDNRNRTASNVRSCFTKAGGSMGETGS 128
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
V F F + + D D +++ A+ AGA+DVI E + +V+
Sbjct: 129 VSFMFDHVGEIVYPLSAGDADTVMEAAILAGADDVISD------------ENGHTIVTAF 176
Query: 262 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
++ D++T L E+ E+ + P T VD++ E LI L + DDV VY +
Sbjct: 177 EDIGDVSTALEESLGEAESVRPT-WRPQTGTPVDEDKAESVMRLIGNLDDDDDVQNVYAN 235
>gi|46580664|ref|YP_011472.1| hypothetical protein DVU2259 [Desulfovibrio vulgaris str.
Hildenborough]
gi|387153948|ref|YP_005702884.1| hypothetical protein Deval_2102 [Desulfovibrio vulgaris RCH1]
gi|49037275|sp|P62035.1|Y2259_DESVH RecName: Full=Probable transcriptional regulatory protein DVU_2259
gi|46450083|gb|AAS96732.1| conserved hypothetical protein TIGR01033 [Desulfovibrio vulgaris
str. Hildenborough]
gi|311234392|gb|ADP87246.1| protein of unknown function DUF28 [Desulfovibrio vulgaris RCH1]
Length = 247
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 138/244 (56%), Gaps = 15/244 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RKG QDAK+ K++++ KE+I A K GG +P N+ L A + AK +++PKD
Sbjct: 6 KWANIQHRKGRQDAKRGKMFTKAAKEIIIAAKAGG-DPVGNSRLRAAIAAAKAINLPKDK 64
Query: 139 VERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+E IK+ + E +E YE YG GGV+++VEV TD R+VA VR ++ GG M
Sbjct: 65 IENAIKKGTGELAGGDILEMAYEGYGPGGVALIVEVATDNKNRTVAEVRHILSKHGGSMG 124
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
+ G V + F R V+ ++ ++QL+++AL+AGAEDV TDE + ++V
Sbjct: 125 ESGCVAWMFDRKGVITLEKDKYTEEQLMEVALEAGAEDV---------TDEGES---WEV 172
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
V+ + ++ + L AG+ ++ + ++P IEVD E L+ L + DDV
Sbjct: 173 VTAAADFNAVREALEAAGVEMQSAEFT-MVPQNEIEVDAETGRKLMRLVDALEDNDDVQN 231
Query: 318 VYTD 321
V+ +
Sbjct: 232 VHAN 235
>gi|349574447|ref|ZP_08886397.1| YebC like protein [Neisseria shayeganii 871]
gi|348013993|gb|EGY52887.1| YebC like protein [Neisseria shayeganii 871]
Length = 242
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 89/248 (35%), Positives = 138/248 (55%), Gaps = 19/248 (7%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +K DAK+ K+++R+ KE+ A + GG +PTSN L ++KA + ++PKD
Sbjct: 6 KWANIQHKKARVDAKRGKIFTRLIKEITVAARLGGGDPTSNPRLRLAMDKAWDANMPKDN 65
Query: 139 VERNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
V+R I + + + +IE YE YG GG +++V+ +TD TR+VA VR GG +
Sbjct: 66 VQRAIDKGTGNLEGVDYIELRYEGYGIGGAALMVDCMTDNKTRTVADVRHAFNKYGGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G V F F A + + DAD+D L++ AL+AGAEDVI V+ED E V
Sbjct: 126 TDGCVAFNF--AHQGYLVYADADEDALMEAALEAGAEDVI---VDEDGIIE--------V 172
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPIT--TIEVDDEAMELNKELIAKLLELDDV 315
V+ ++ + L AG FE+ +G + T+ +EA+++ K LI L +LDDV
Sbjct: 173 VTAPADWAQVKAALEAAG--FESQDGDVTMRAQNETVLSGEEAVKMQK-LIDALEDLDDV 229
Query: 316 DAVYTDQI 323
VYT +
Sbjct: 230 QNVYTSAV 237
>gi|257055534|ref|YP_003133366.1| hypothetical protein Svir_15040 [Saccharomonospora viridis DSM
43017]
gi|256585406|gb|ACU96539.1| conserved hypothetical protein TIGR01033 [Saccharomonospora viridis
DSM 43017]
Length = 249
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 129/238 (54%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++++ K + A + GG +P N L ++KAK+ VP+D +ER KR
Sbjct: 13 KKAALDAKRGKLFAKLVKNIEVAARTGGGDPDGNPTLYDAIQKAKKNSVPQDNIERARKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
+ E G + +YE Y GGV++++E LTD R+ + VR + GG +ADPGSV
Sbjct: 73 GAGEEAGGADWQNIMYEGYAPGGVAVLIECLTDNKNRAASEVRTALTRNGGSLADPGSVS 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R VV + +D +L LDAGAE+V +D E+ Y+++S + +
Sbjct: 133 YLFNRKGVVIMPKNGVSEDDVLMAVLDAGAEEV-------NDLGEN-----YEIISEAGD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ T L+EAG +E+ S LP + +D E LI L + DDV VY++
Sbjct: 181 MVAVRTALQEAGYDYESAEAS-FLPSVHVPLDAETARKVFRLIEALEDCDDVQNVYSN 237
>gi|399923832|ref|ZP_10781190.1| hypothetical protein Prhi1_01255 [Peptoniphilus rhinitidis 1-13]
Length = 241
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 133/245 (54%), Gaps = 17/245 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +KG +DAKK K+++++ +++ A K+GG +P N L ++KAK ++P D
Sbjct: 6 KWNNIKNKKGKEDAKKGKIFTKLARQITVAAKEGGLDPDYNPSLKVAIDKAKAENMPNDN 65
Query: 139 VERNIKRASE-KGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
++R I +A + F E VYE YG GGV+++V LTD R+ VR + G +
Sbjct: 66 IDRAIAKAGGGDNDDNFEEIVYEGYGPGGVAVMVNCLTDNRNRTAPEVRHIFDKYSGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
PG V F F + + + D+D+ IA+DAGAEDVI DR E +++
Sbjct: 126 QPGCVSFMFDKKGSLGVLKEGLDEDEFTLIAIDAGAEDVI-----------DRGEA-FEI 173
Query: 258 VSTSDNYTDITTKLREAGIPF-ETDNGSELLPITTIEVDDEAMELNKE-LIAKLLELDDV 315
++ ++Y ++ L E+G F E+D +P TT E+ DE N + LI L + DDV
Sbjct: 174 ITEPEDYHNVRKTLEESGRSFVESD--ITFIPQTTTELTDEDDIKNMDKLIDALEDNDDV 231
Query: 316 DAVYT 320
VYT
Sbjct: 232 TDVYT 236
>gi|398355034|ref|YP_006400498.1| hypothetical protein USDA257_c52160 [Sinorhizobium fredii USDA 257]
gi|390130360|gb|AFL53741.1| UPF0082 protein [Sinorhizobium fredii USDA 257]
Length = 248
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 130/240 (54%), Gaps = 15/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++S++ +E+ A K G P+P N L ++ AK +PKD +ER
Sbjct: 10 IMHRKGRQDAVRSKMFSKLAREITVAAKTGLPDPGMNPRLRLAIQNAKAQSMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+K+A+ E + E YE YG GGV+++VE LTD R+ + VR GG + + GSV
Sbjct: 70 VKKAAGGDAENYEEVRYEGYGPGGVAVIVEALTDNRNRTASNVRSTFTKAGGALGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R + + D D++++ A++AGAEDV TDE+ + ++ +
Sbjct: 130 SFSFDRVGEITYTLSAGDADKVMEAAIEAGAEDV--------STDEEG----HTIICGFE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELL-PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ D++ L G+ E + + P T+ VD+E + +LI L + DDV VY++
Sbjct: 178 DIGDVSKALE--GVLGEAETVKAIWRPQNTVPVDEEKAQSLMKLIDNLEDDDDVQNVYSN 235
>gi|334340937|ref|YP_004545917.1| hypothetical protein [Desulfotomaculum ruminis DSM 2154]
gi|334092291|gb|AEG60631.1| protein of unknown function DUF28 [Desulfotomaculum ruminis DSM
2154]
Length = 243
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 136/244 (55%), Gaps = 16/244 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
S I +K DA++ KL++R+ KE+I A + GGP+P N L +EKA+E ++P D ++
Sbjct: 8 STIKRKKAKIDAQRGKLFTRLSKEIIIAARNGGPDPAGNRRLKTAVEKAREANIPNDNIQ 67
Query: 141 RNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I++ + G+ A F E YE YG GGV++++ V TD R+ A VR ++ GG + +
Sbjct: 68 RAIQKGAGGGEGANFEEFAYEGYGPGGVAVLIYVATDNRNRTAAEVRHILSKQGGNLGES 127
Query: 200 GSV--MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G V MFK + +++ +D L+ AL+AGAED+ T+ED +++
Sbjct: 128 GCVNWMFKEKGILILDRSQIKMSEDDLMLAALEAGAEDI--------KTEEDS----FEI 175
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ +++ + L++ GIP D ++ T +++ + E ++I L + DDV A
Sbjct: 176 TTAPEDFEKVCEALKQQGIPL-ADAELSMVAQTMVKLQGDEAEKMVKIIDLLEDNDDVQA 234
Query: 318 VYTD 321
VYT+
Sbjct: 235 VYTN 238
>gi|309812854|ref|ZP_07706587.1| DNA-binding regulatory protein, YebC/PmpR family [Dermacoccus sp.
Ellin185]
gi|308433176|gb|EFP57075.1| DNA-binding regulatory protein, YebC/PmpR family [Dermacoccus sp.
Ellin185]
Length = 270
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 132/243 (54%), Gaps = 20/243 (8%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++++ K + A + GG +PT N L ++KAK+ VP D ++R +KR
Sbjct: 26 KKAAIDAKRGKLFAKLIKNIEVAARSGGGDPTGNPTLYDAIQKAKKSSVPNDNIDRAVKR 85
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S E G + YE Y GGV++++E LTD R+VA VR ++ GG MAD GSV
Sbjct: 86 GSGAEAGGAEYQALTYEGYAPGGVALLIECLTDNKNRAVAEVRTALQKNGGSMADSGSVA 145
Query: 204 FKFRRARVVNIKFTDADK-----DQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
+ F R +V + DK D LL+I L+AGAEDV +D E +++V
Sbjct: 146 YLFNRKGIVIVPKAQGDKPDTTEDALLEIVLEAGAEDV-------NDLGES-----FEIV 193
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
S + ++ + L+ AGI +++ S +P + +D + + +I L + DDV V
Sbjct: 194 SEAGDFVGVREALQAAGIDYDSAEAS-FVPSMEVPLDKDGAKKMFRVIEALEDSDDVQNV 252
Query: 319 YTD 321
+ +
Sbjct: 253 FAN 255
>gi|295692599|ref|YP_003601209.1| hypothetical protein LCRIS_00737 [Lactobacillus crispatus ST1]
gi|295030705|emb|CBL50184.1| UPF0082 protein [Lactobacillus crispatus ST1]
Length = 242
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 125/240 (52%), Gaps = 15/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K GGP+P N L V++KA+ ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKLSREIYMAAKSGGPDPDGNPTLRMVIDKARSNNMPKDNIKRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A +E + E YE Y GGV++ VE LTD R+ + VR GG + GSV
Sbjct: 70 IKKAEGGSEEHYDEITYEGYAPGGVAVFVEALTDNKNRTASDVRVAFTRNGGSLGATGSV 129
Query: 203 MFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R V++ TDAD+DQ+L +DAG +D+ DD Y++ +
Sbjct: 130 AYMFDRKGYIVIDRSTTDADEDQVLLDVMDAGGDDL----QTSDDA--------YEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ + L + G D ++P T V + E + L+ L + DDV VYT
Sbjct: 178 PKQFAGVRDALIKDGYKL-ADAELTMIPQNTTPVPADKKEQFEHLVDALEDSDDVQNVYT 236
>gi|227877248|ref|ZP_03995321.1| protein of hypothetical function DUF28 [Lactobacillus crispatus
JV-V01]
gi|256842811|ref|ZP_05548299.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN]
gi|256848890|ref|ZP_05554324.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
gi|262045778|ref|ZP_06018742.1| conserved hypothetical protein [Lactobacillus crispatus MV-3A-US]
gi|293380454|ref|ZP_06626521.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
crispatus 214-1]
gi|312977668|ref|ZP_07789415.1| conserved hypothetical protein [Lactobacillus crispatus CTV-05]
gi|423317883|ref|ZP_17295780.1| UPF0082 protein [Lactobacillus crispatus FB049-03]
gi|423321219|ref|ZP_17299091.1| UPF0082 protein [Lactobacillus crispatus FB077-07]
gi|227863104|gb|EEJ70550.1| protein of hypothetical function DUF28 [Lactobacillus crispatus
JV-V01]
gi|256614231|gb|EEU19432.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN]
gi|256714429|gb|EEU29416.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
gi|260573737|gb|EEX30293.1| conserved hypothetical protein [Lactobacillus crispatus MV-3A-US]
gi|290922961|gb|EFD99896.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
crispatus 214-1]
gi|310895407|gb|EFQ44474.1| conserved hypothetical protein [Lactobacillus crispatus CTV-05]
gi|405596542|gb|EKB69878.1| UPF0082 protein [Lactobacillus crispatus FB077-07]
gi|405597470|gb|EKB70739.1| UPF0082 protein [Lactobacillus crispatus FB049-03]
Length = 242
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 125/240 (52%), Gaps = 15/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K GGP+P N L V++KA+ ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKLSREIYMAAKSGGPDPDGNPTLRMVIDKARSNNMPKDNIKRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A +E + E YE Y GGV++ VE LTD R+ + VR GG + GSV
Sbjct: 70 IKKAEGGSEEHYDEITYEGYAPGGVAVFVEALTDNKNRTASDVRVAFTRNGGSLGATGSV 129
Query: 203 MFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R V++ TDAD+DQ+L +DAG +D+ DD Y++ +
Sbjct: 130 AYMFDRKGYIVIDRSTTDADEDQVLLDVMDAGGDDL----QTSDDA--------YEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ + L + G D ++P T V + E + L+ L + DDV VYT
Sbjct: 178 PKQFAGVRDALIKDGYKL-ADAELTMIPQNTTPVPADKKEQFEHLVDALEDSDDVQNVYT 236
>gi|357388391|ref|YP_004903230.1| hypothetical protein KSE_14460 [Kitasatospora setae KM-6054]
gi|311894866|dbj|BAJ27274.1| hypothetical protein KSE_14460 [Kitasatospora setae KM-6054]
Length = 251
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 84/239 (35%), Positives = 133/239 (55%), Gaps = 16/239 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL+++M K + A + GG +P N L ++KAK+ VP D + R +KR
Sbjct: 13 KKAAIDAKRGKLFAKMIKNIEVAARTGGGDPAGNPTLYDAIQKAKKSSVPIDNINRAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S E G + +YE YG GV++++E LTD R+ + VR + GG MADPGSV
Sbjct: 73 GSGAEAGGADYSTIMYEGYGPNGVAVLIECLTDNRNRAASDVRVAMTRNGGNMADPGSVS 132
Query: 204 FKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
+ F R VV + D D+D++LD+ LDAGAE+V D E ++V+S +
Sbjct: 133 YLFNRKGVVIVPKADGVDEDKILDVVLDAGAEEV-----------NDLGEA-FEVMSEAT 180
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ + T L +AGI +++ + + +P +E+D + +LI L + DDV V+ +
Sbjct: 181 DMVAVRTALVDAGIDYDSAD-ANFVPSMQVELDADGARKIFKLIDALEDSDDVQNVFAN 238
>gi|125974565|ref|YP_001038475.1| hypothetical protein Cthe_2075 [Clostridium thermocellum ATCC
27405]
gi|256004074|ref|ZP_05429059.1| protein of unknown function DUF28 [Clostridium thermocellum DSM
2360]
gi|281419090|ref|ZP_06250107.1| protein of unknown function DUF28 [Clostridium thermocellum JW20]
gi|385780004|ref|YP_005689169.1| hypothetical protein Clo1313_2734 [Clostridium thermocellum DSM
1313]
gi|419721349|ref|ZP_14248513.1| UPF0082 protein yeeN [Clostridium thermocellum AD2]
gi|419726873|ref|ZP_14253893.1| UPF0082 protein yeeN [Clostridium thermocellum YS]
gi|166227516|sp|A3DH53.1|Y2075_CLOTH RecName: Full=Probable transcriptional regulatory protein Cthe_2075
gi|125714790|gb|ABN53282.1| protein of unknown function DUF28 [Clostridium thermocellum ATCC
27405]
gi|255991997|gb|EEU02094.1| protein of unknown function DUF28 [Clostridium thermocellum DSM
2360]
gi|281407239|gb|EFB37500.1| protein of unknown function DUF28 [Clostridium thermocellum JW20]
gi|316941684|gb|ADU75718.1| protein of unknown function DUF28 [Clostridium thermocellum DSM
1313]
gi|380769838|gb|EIC03738.1| UPF0082 protein yeeN [Clostridium thermocellum YS]
gi|380782519|gb|EIC12153.1| UPF0082 protein yeeN [Clostridium thermocellum AD2]
Length = 242
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 137/244 (56%), Gaps = 16/244 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +K DA+K K+++++G+E+ VK+GGP+P N+ L V+ KAK ++P +
Sbjct: 6 KWANIKHKKQKTDAQKGKIFTKIGREIAIVVKQGGPDPEVNSKLKDVIAKAKAANMPNET 65
Query: 139 VERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ R+IK+A+ E + E VYE YG GGV+++VE TD R+ VR + GG +
Sbjct: 66 IMRSIKKAAGEVDSTNYEEVVYEGYGPGGVAVIVEATTDNRNRTAGEVRHLFDKFGGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTD-ADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
G V F F + V+ I+ +D ++D L+ ALD GAED T ED Y++
Sbjct: 126 TTGCVSFMFDKKGVILIEKSDKVNEDDLMMKALDLGAEDF---------TAED---EYFE 173
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDD-EAMELNKELIAKLLELDDV 315
+++ ++++ + L + G F + E++P TT + D + +E +LI L +LDDV
Sbjct: 174 IITAPEDFSKVREGLEKEGYEF-VEAEVEMVPQTTTTLTDPKHIEFMNKLIDSLEDLDDV 232
Query: 316 DAVY 319
VY
Sbjct: 233 QNVY 236
>gi|296331673|ref|ZP_06874142.1| hypothetical protein BSU6633_11223 [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305675368|ref|YP_003867040.1| hypothetical protein BSUW23_13470 [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296151268|gb|EFG92148.1| hypothetical protein BSU6633_11223 [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305413612|gb|ADM38731.1| conserved hypothetical protein [Bacillus subtilis subsp. spizizenii
str. W23]
Length = 240
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 141/242 (58%), Gaps = 17/242 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RK AQDAK+ K++ ++ KE+ A K+GG +P +N+ L V+EKAK ++P + ++R
Sbjct: 10 IQKRKNAQDAKRGKIFMKLAKEIYVAAKEGGADPEANSALRLVIEKAKGANMPNENIDRA 69
Query: 143 IKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+A+ + E++ YE YG G++++VE +TD R+ + VR GG + + G
Sbjct: 70 IKKAAGSLDGSSYEEITYEGYGPSGIAVMVECVTDNKNRTASNVRTAFNKNGGSLGESGC 129
Query: 202 VMFKFRRARVVNIKFTD--ADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
V F F R + I TD ++D+L+ L+AG E++ T+ED+ Y+V++
Sbjct: 130 VAFLFERKGFIAIDRTDRQIEEDELMLDVLEAGGEEL--------QTEEDQ----YEVLT 177
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
D + ++ T L+ + P + + +LP T + DD+A+E ++LI+ L + DDV VY
Sbjct: 178 EPDRFEEVKTALK-SKYPISSAEVT-MLPKTYADADDQAVEKLEKLISILEDDDDVQEVY 235
Query: 320 TD 321
T+
Sbjct: 236 TN 237
>gi|15891221|ref|NP_356893.1| hypothetical protein Atu3727 [Agrobacterium fabrum str. C58]
gi|33517060|sp|Q8U9K1.1|Y3727_AGRT5 RecName: Full=Probable transcriptional regulatory protein Atu3727
gi|15159582|gb|AAK89678.1| conserved hypothetical protein [Agrobacterium fabrum str. C58]
Length = 248
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 130/240 (54%), Gaps = 15/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QD+ ++K++S++ +E+ A K G P+P N L ++ AK +PKD +ER
Sbjct: 10 IMHRKGKQDSVRSKMFSKLAREITVAAKTGMPDPNMNARLRLAIQNAKAQSMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+AS E + E YE YG GGV++VVE LTD R+ + VR + GG + + GSV
Sbjct: 70 IKKASGADSENYDEVRYEGYGPGGVAVVVEALTDNRNRTASNVRSIFTKAGGALGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R + K D D++++ A++AGA+DV + +E + ++ +
Sbjct: 130 SFSFDRVGEITYKAEVGDADKVMEAAIEAGADDV------------ESSEDGHTIICGFE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELL-PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+++ L G+ E ++ + P T+ VD+E + +LI L + DDV VY++
Sbjct: 178 AMNEVSKALE--GVLGEAESVKAIWKPQNTVPVDEEKAQSLMKLIDNLEDDDDVQNVYSN 235
>gi|385829803|ref|YP_005867616.1| hypothetical protein CVCAS_0214 [Lactococcus lactis subsp. lactis
CV56]
gi|418037139|ref|ZP_12675528.1| hypothetical protein LLCRE1631_00335 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|326405811|gb|ADZ62882.1| conserved hypothetical protein [Lactococcus lactis subsp. lactis
CV56]
gi|354695018|gb|EHE94646.1| hypothetical protein LLCRE1631_00335 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
Length = 238
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 130/246 (52%), Gaps = 16/246 (6%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ +A K+G P+P SN+ L V+E+AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGATSKVYAKFGVEIYAAAKQGEPDPESNSSLKFVIERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A G E F++ YE +G G ++ E LT + R++A VR GG
Sbjct: 61 KHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMVIAETLTSNVNRTIANVRTTFHKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ G+V + F V I F D D + +I LDA E D + E
Sbjct: 121 IGAAGAVSYMFDNTGV--IVFEGTDPDHIFEILLDA-----------EVDVHDVTEEEGN 167
Query: 256 KVVST--SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELD 313
VV T +D + I L+EAGI + E++P + +E+ E +E+ + LI L + D
Sbjct: 168 IVVYTEPTDLHKGIAA-LKEAGITEFSTTELEMIPQSEVELSPEDLEIFEGLIDALEDDD 226
Query: 314 DVDAVY 319
DV VY
Sbjct: 227 DVQKVY 232
>gi|260438339|ref|ZP_05792155.1| glucose-1-phosphate adenylyltransferase [Butyrivibrio crossotus DSM
2876]
gi|292808926|gb|EFF68131.1| glucose-1-phosphate adenylyltransferase [Butyrivibrio crossotus DSM
2876]
Length = 247
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 126/221 (57%), Gaps = 15/221 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +K DA K K+++R+GKE++ AVK+GGP+P +N+ L V+ KAK ++P D ++
Sbjct: 8 ANIKHKKEKNDAAKGKIFTRLGKELMVAVKEGGPDPNNNSKLRDVIAKAKSNNMPNDTID 67
Query: 141 RNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R+IK+A+ A F YE YG G +I+VE LTD R+ + VR GG + P
Sbjct: 68 RSIKKAAGDANAANFTAITYEGYGPNGTAIIVETLTDNKNRTASNVRNAFTKGGGNVGTP 127
Query: 200 GSVMFKF--RRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G V F F + ++N + + D D+L+ +ALDAGA+D +D DED +++
Sbjct: 128 GCVSFMFDTKGQILINKEECNMDSDELMMLALDAGADDF-------NDEDED----AFEI 176
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEA 298
++ D+ + L +AG+ + + ++P T +E+ D A
Sbjct: 177 LTNPDDCGTVREALEKAGLKLDQAEVT-MIPQTWVELTDPA 216
>gi|257068559|ref|YP_003154814.1| hypothetical protein Bfae_13930 [Brachybacterium faecium DSM 4810]
gi|256559377|gb|ACU85224.1| conserved hypothetical protein TIGR01033 [Brachybacterium faecium
DSM 4810]
Length = 254
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 129/238 (54%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++++ K + A + GGP+P N L ++KAK+ VP D ++R +KR
Sbjct: 13 KKAALDAKRGKLFAKLVKNIEVAARMGGPDPAGNPTLFDAIQKAKKTSVPNDNIDRAVKR 72
Query: 146 ASEKGQEA--FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
+ +YE Y GGV+++VE LTD R+V+ VR GG MAD GSV
Sbjct: 73 GGGLDGGGVDYETLMYEGYAPGGVAVLVECLTDNKNRAVSEVRLAFNRNGGNMADSGSVA 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R VV + + +D LL++ LDAGAE++ DE A ++++S + +
Sbjct: 133 YLFERKGVVTVTKGEHSEDDLLEVVLDAGAEEI---------NDEGEA---FEILSEATD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ T L+EAG+ +++ ++ +P VD + LI L + DDV VY++
Sbjct: 181 VVAVRTALQEAGVDYDSAE-AQFVPTMRTPVDLDGAHKALRLIEALEDSDDVQNVYSN 237
>gi|423016690|ref|ZP_17007411.1| hypothetical protein AXXA_19667 [Achromobacter xylosoxidans AXX-A]
gi|338780272|gb|EGP44685.1| hypothetical protein AXXA_19667 [Achromobacter xylosoxidans AXX-A]
Length = 243
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 130/243 (53%), Gaps = 14/243 (5%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RKG QDAK+ KL++++ +E+ A + GGP+P SN L +KA + ++PKD
Sbjct: 6 KWANIQHRKGRQDAKRGKLWTKIIREITVAARAGGPDPDSNPRLRMAWDKATDANMPKDN 65
Query: 139 VERNIKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
++R I+R A EA+ E YE YG GG +++V+ +TD TR+VA VR GG +
Sbjct: 66 IQRAIQRGAGGADGEAYEEVRYEGYGIGGAAVIVDCMTDNRTRTVAEVRHAFAKNGGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV F F+ + +DQ+++ AL+AGAEDV TDE E +V
Sbjct: 126 QEGSVAFMFKHCGQF-VFAPGTPEDQVMEAALEAGAEDVA--------TDE---EGVIEV 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ +Y + +AG+ E D G + + E+ E ++L+ L LDDV
Sbjct: 174 ICAPTDYAAVRKAFDDAGLKAEVD-GIVMKALNETELAGEDAIKMQKLLDALEGLDDVQE 232
Query: 318 VYT 320
VYT
Sbjct: 233 VYT 235
>gi|311105296|ref|YP_003978149.1| hypothetical protein AXYL_02110 [Achromobacter xylosoxidans A8]
gi|310759985|gb|ADP15434.1| hypothetical protein AXYL_02110 [Achromobacter xylosoxidans A8]
Length = 243
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 133/247 (53%), Gaps = 16/247 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RKG QDAK+ KL++++ +E+ A + GGP+P SN L +KA + ++PKD
Sbjct: 6 KWANIQHRKGRQDAKRGKLWTKIIREITVAARAGGPDPDSNPRLRMAWDKATDANMPKDN 65
Query: 139 VERNIKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
++R I+R A EA+ E YE YG GG +++V+ +TD TR+VA VR GG +
Sbjct: 66 IQRAIQRGAGGADGEAYEEVRYEGYGIGGAAVIVDCMTDNRTRTVAEVRHAFAKNGGNLG 125
Query: 198 DPGSVMFKFRR-ARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
GSV F F+ + V T DK +++ AL+AGAEDV TDE E +
Sbjct: 126 QEGSVAFMFKHCGQFVFAPGTSEDK--VMEAALEAGAEDVT--------TDE---EGVIE 172
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
VV +Y + + AG+ E D G + + E+ E ++L+ L LDDV
Sbjct: 173 VVCAPADYAAVRSAFDAAGLKAEVD-GIVMKALNETELAGEDAIKMQKLLDALEGLDDVQ 231
Query: 317 AVYTDQI 323
VYT+ +
Sbjct: 232 EVYTNVV 238
>gi|120403556|ref|YP_953385.1| hypothetical protein Mvan_2570 [Mycobacterium vanbaalenii PYR-1]
gi|166228405|sp|A1T879.1|Y2570_MYCVP RecName: Full=Probable transcriptional regulatory protein Mvan_2570
gi|119956374|gb|ABM13379.1| protein of unknown function DUF28 [Mycobacterium vanbaalenii PYR-1]
Length = 251
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 127/238 (53%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K DA++ K+++++ K + A + GG +P N L ++KAK+ VP D +ER KR
Sbjct: 13 KKAVIDARRGKMFAKLIKNIEVAARTGGGDPAGNPTLFDAIQKAKKSSVPNDNIERARKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S E G + YE YG GV+++VE LTD R+ VR + GG MADPGSV
Sbjct: 73 GSGEEAGGADWQTITYEGYGPNGVAVLVECLTDNRNRAAGEVRVAMTRNGGNMADPGSVA 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R V+ ++ D +D +L LDAGAEDV D D ++++S +
Sbjct: 133 YLFTRKGVITLEKNDLTEDDVLAAVLDAGAEDV------NDLGDS------FEIISEPTD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ T L++AGI +E+ S P T+ VD EA +L+ L + DDV VYT+
Sbjct: 181 LVAVRTALQDAGIDYESAEAS-FQPSVTVPVDLEAARKVLKLVDALEDSDDVQDVYTN 237
>gi|333978128|ref|YP_004516073.1| hypothetical protein Desku_0663 [Desulfotomaculum kuznetsovii DSM
6115]
gi|333821609|gb|AEG14272.1| UPF0082 protein yeeN [Desulfotomaculum kuznetsovii DSM 6115]
Length = 242
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 138/242 (57%), Gaps = 14/242 (5%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
S I +K DA++ KL++R+ +E+I A + GG +P +N L A +++AKE ++P + ++
Sbjct: 8 STIKRKKAKVDAQRGKLFTRLSREIIVAARLGGGDPDANPRLKAAIQRAKEANIPNENIQ 67
Query: 141 RNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I++ + E G + E +YE YG GGV++++E++TD R+ +R + GG + +
Sbjct: 68 RAIQKGTGELGAANYEELIYEGYGPGGVAVMMEIMTDNRNRTAGEIRHLFSRHGGNLGEA 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
G V + F + V+ ++ D+D+L+ AL+AGAED+ T+ED +++++
Sbjct: 128 GCVSWMFSKKGVIVVEKDGLDEDELMLTALEAGAEDM--------KTEEDE----FEIIT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+++ + L E GIP + ++P +T+++ + E L+ L + DD+ VY
Sbjct: 176 APEDFEKVRQVLVEKGIPI-AEAQVTMVPQSTVKLAGQEAEQMMRLMEALEDHDDIQEVY 234
Query: 320 TD 321
+
Sbjct: 235 AN 236
>gi|120602034|ref|YP_966434.1| hypothetical protein Dvul_0986 [Desulfovibrio vulgaris DP4]
gi|166227547|sp|A1VC41.1|Y986_DESVV RecName: Full=Probable transcriptional regulatory protein Dvul_0986
gi|120562263|gb|ABM28007.1| protein of unknown function DUF28 [Desulfovibrio vulgaris DP4]
Length = 247
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 138/244 (56%), Gaps = 15/244 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RKG QDAK+ K++++ KE+I A K GG +P N+ L A + AK +++PKD
Sbjct: 6 KWANIQHRKGRQDAKRGKMFTKAAKEIIIAAKAGG-DPVGNSRLRAAIAAAKAINLPKDK 64
Query: 139 VERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+E IK+ + E +E YE YG GGV+++VEV TD R+VA VR ++ GG M
Sbjct: 65 IENAIKKGTGELAGGDILEMAYEGYGPGGVALIVEVATDNKNRTVAEVRHILSKHGGSMG 124
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
+ G V + F R V+ ++ ++QL+++AL+AGAEDV TDE + ++V
Sbjct: 125 ESGCVAWMFDRKGVITLEKDKYTEEQLMEVALEAGAEDV---------TDEGES---WEV 172
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
V+ + ++ + L AG+ ++ + ++P IEVD E L+ L + DDV
Sbjct: 173 VTAAADFNAVREALEAAGVEMQSAEFT-MVPQNEIEVDVETGRKLMRLVDALEDNDDVQN 231
Query: 318 VYTD 321
V+ +
Sbjct: 232 VHAN 235
>gi|89055871|ref|YP_511322.1| hypothetical protein Jann_3380 [Jannaschia sp. CCS1]
gi|119391968|sp|Q28LW5.1|Y3380_JANSC RecName: Full=Probable transcriptional regulatory protein Jann_3380
gi|88865420|gb|ABD56297.1| protein of unknown function DUF28 [Jannaschia sp. CCS1]
Length = 255
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/238 (36%), Positives = 121/238 (50%), Gaps = 6/238 (2%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKG QD +AK++S+M KE+ A K G P+P N L +++AK + VPKD++E
Sbjct: 8 ANIQHRKGRQDKLRAKVFSKMSKEITVAAKMGDPDPDKNPRLRLAVKEAKSVSVPKDVIE 67
Query: 141 RNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
R I +A+ E + E YE YG GV+++VE +TD R+ + VR GG + + G
Sbjct: 68 RAIAKATGGDSENYDEIRYEGYGPNGVAVIVETMTDNKNRTASTVRSTFTKNGGNLGETG 127
Query: 201 SVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
SV F F R V + D D ++ A++AGAEDV NE D DED T
Sbjct: 128 SVGFMFDRKGQVTYPLSAGDADTIMMAAIEAGAEDV---ETNEGDGDEDLGGHVIWCADT 184
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
N D++ L EA + P TT E+ E + LI L E DDV V
Sbjct: 185 DLN--DVSNAL-EADLGESESTKLVWRPTTTTELGLEDAQKLMRLIDALEEDDDVQTV 239
>gi|326773258|ref|ZP_08232541.1| conserved hypothetical protein [Actinomyces viscosus C505]
gi|343522336|ref|ZP_08759302.1| DNA-binding regulatory protein, YebC/PmpR family [Actinomyces sp.
oral taxon 175 str. F0384]
gi|326636488|gb|EGE37391.1| conserved hypothetical protein [Actinomyces viscosus C505]
gi|343401745|gb|EGV14251.1| DNA-binding regulatory protein, YebC/PmpR family [Actinomyces sp.
oral taxon 175 str. F0384]
Length = 254
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 127/238 (53%), Gaps = 16/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++R+ K + A + GG +PT N L ++KAK+ VP D + R +KR
Sbjct: 13 KKAAIDAKRGKLFARLIKNIEVAARTGGGDPTGNPTLFDAIQKAKKNSVPADNITRAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S E G + +YE YG GGV+ +VE LTD R+ + VR GG +ADPGSV
Sbjct: 73 GSGEEAGGADWQTIMYEGYGPGGVAFLVECLTDNRNRAASDVRVAFSRNGGNLADPGSVA 132
Query: 204 FKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
+ F R VV + D D+D +L L+AGAE+V ED E +++ S
Sbjct: 133 YNFTRKGVVEVAKADGVDEDSILMAVLEAGAEEV-----------EDMGES-FEIYSEPG 180
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ + T L EAG+ +++ + + T +EVD E LI L + DDV VYT
Sbjct: 181 DIVAVRTALTEAGMDYDSAE-VQFVAGTKVEVDVEGARKVFRLIDALEDSDDVQNVYT 237
>gi|313884405|ref|ZP_07818166.1| DNA-binding regulatory protein, YebC/PmpR family [Eremococcus
coleocola ACS-139-V-Col8]
gi|312620189|gb|EFR31617.1| DNA-binding regulatory protein, YebC/PmpR family [Eremococcus
coleocola ACS-139-V-Col8]
Length = 244
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 134/244 (54%), Gaps = 16/244 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
SKI +KGA+DA+K ++ ++ KE+ A K GG +P+ N+ L VL+KAK ++PKD +
Sbjct: 11 SKIKNKKGAEDARKGAVFGKLSKEIFMAAKNGGGDPSMNSTLRMVLDKAKAENMPKDNIT 70
Query: 141 RNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+A++ G + E YE YG GG++I+V LTD R+ + GG +
Sbjct: 71 RAIKKATDAGDMTNYDEITYEGYGSGGIAILVHTLTDNKNRTDTGIHVAFSRNGGNLGTS 130
Query: 200 GSVMFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV + F R V++ + + D+D + ++A++AGAEDV ++ +++
Sbjct: 131 GSVAYMFDRKGYVVLDREELEVDEDTIFELAIEAGAEDV------------QVSDEAFEI 178
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ ++ + L AG F + ++P TI +D E +E ++L+ L + DDV
Sbjct: 179 YTDPSDFAAVKEALEAAGYEFARAELT-MVPQNTIAIDGEKLEKLEKLVDALEDDDDVQQ 237
Query: 318 VYTD 321
VYT+
Sbjct: 238 VYTN 241
>gi|389571390|ref|ZP_10161486.1| hypothetical protein BAME_00550 [Bacillus sp. M 2-6]
gi|407979230|ref|ZP_11160049.1| hypothetical protein BA1_08511 [Bacillus sp. HYC-10]
gi|388428951|gb|EIL86740.1| hypothetical protein BAME_00550 [Bacillus sp. M 2-6]
gi|407414158|gb|EKF35819.1| hypothetical protein BA1_08511 [Bacillus sp. HYC-10]
Length = 239
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 129/244 (52%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K ++DA +++Y++ G+E+ A K+G PNP SN L VLE+AK VP
Sbjct: 1 MGRKWNNIKEKKASKDANTSRIYAKFGREIYVAAKQGEPNPESNQALRFVLERAKTYSVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K IV+R I++A +E F E YE +G G ++V+ LT+ + R+ + VR GG
Sbjct: 61 KHIVDRAIEKAKGGAEENFDELRYEGFGPNGSMVIVDALTNNVNRTASDVRAAFGKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
M GSV + F + V+ ++ ++ L + D D++E EDDT
Sbjct: 121 MGVSGSVAYMFDQTAVIGVEGKSEEETLELLMEADIDVRDIME----EDDT--------V 168
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
V + D + + ++AG+ T +LP + +DDE+ ++LI L EL+DV
Sbjct: 169 IVYAEPDQFHQVQEAFKQAGVEEFTVAEITMLPQNEVTLDDESKAQFEKLIDVLEELEDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QQVY 232
>gi|227893238|ref|ZP_04011043.1| protein of hypothetical function DUF28 [Lactobacillus ultunensis
DSM 16047]
gi|227864921|gb|EEJ72342.1| protein of hypothetical function DUF28 [Lactobacillus ultunensis
DSM 16047]
Length = 242
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 126/240 (52%), Gaps = 15/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K GGP+P N L V++KA+ ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKLSREIYMAAKSGGPDPDGNPTLRMVIDKARSNNMPKDNIKRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A +E + E YE Y GGV+I VE LTD R+ + VR GG + GSV
Sbjct: 70 IKKAEGGSEEHYDEITYEGYAPGGVAIFVEALTDNKNRTASDVRVAFTRNGGSLGATGSV 129
Query: 203 MFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R V++ TDAD+DQ+L ++AG +D+ DD Y++ +
Sbjct: 130 AYMFDRKGYIVIDRSTTDADEDQVLLDVMNAGGDDL----QTSDDA--------YEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ ++ L + G D ++P T V + E + L+ L + DDV VYT
Sbjct: 178 PKQFAEVRDALIKDGYKL-ADAELTMIPQNTTPVPADKKEQFEHLVDALEDNDDVQNVYT 236
>gi|365887733|ref|ZP_09426554.1| conserved hypothetical protein [Bradyrhizobium sp. STM 3809]
gi|365336645|emb|CCD99085.1| conserved hypothetical protein [Bradyrhizobium sp. STM 3809]
Length = 248
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/246 (34%), Positives = 129/246 (52%), Gaps = 27/246 (10%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA K+KL+ ++ +E+ A K G P+P N L A + A+ ++PKD +ER
Sbjct: 10 IMHRKGRQDAMKSKLFGKLAREITVAAKLGTPDPAMNPRLRAAVVAARAENMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A E + E YE YG GGV+++VE LTD R+ + +R GG + + GSV
Sbjct: 70 IKKALGGEGENYAEIRYEGYGPGGVAVIVEALTDNRNRAASDIRSFFTKSGGNLGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R ++ + A D +LD A++AGA+DVI E ++V ++ D
Sbjct: 130 SFMFDRVGIIEFDRSVASDDAVLDAAIEAGADDVIS------------GEGGHEVYASPD 177
Query: 263 NYTDITTKL-------REAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
++ ++ L R+A + ++ P T+ VDDE E +L+ L E DDV
Sbjct: 178 SFHEVAKNLEAKFGEPRKAALTWK--------PQNTVSVDDETGEKLVKLMDLLNEHDDV 229
Query: 316 DAVYTD 321
VY +
Sbjct: 230 QNVYAN 235
>gi|365158004|ref|ZP_09354247.1| UPF0082 protein [Bacillus smithii 7_3_47FAA]
gi|363622183|gb|EHL73354.1| UPF0082 protein [Bacillus smithii 7_3_47FAA]
Length = 258
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 133/244 (54%), Gaps = 24/244 (9%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RK AQDAKK K++ ++ KE+ A K+G P+P +N L V+EKAK ++P D N
Sbjct: 26 IQRRKNAQDAKKGKVFQKLAKEIYVAAKRGLPDPDANPALRLVVEKAKAANMPND----N 81
Query: 143 IKRASEKGQ-----EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
IKRA EK + E + E VYE YG GGV+I+V LTD R+ + VR GG +
Sbjct: 82 IKRAIEKARGNQNGENYEEIVYEGYGPGGVAIMVTCLTDNKNRTASNVRMAFSKNGGNLG 141
Query: 198 DPGSVMFKFRRARVVNIKFTD--ADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ G V + F R + I+ D D+D +L A++AGAE++ + +E +
Sbjct: 142 ETGCVSYLFDRKGYLVIEREDLNLDEDDMLLQAIEAGAEEM------------ETSEEAF 189
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
++ + +N+ ++ L +AG F T + ++P T +DDE ++L+ L + DDV
Sbjct: 190 EIYTDPENFMEVKENLEKAGFAFATAEIT-MVPQTYTALDDEQSAKMEKLLDMLEDNDDV 248
Query: 316 DAVY 319
+Y
Sbjct: 249 QEIY 252
>gi|328956971|ref|YP_004374357.1| hypothetical protein CAR_c06470 [Carnobacterium sp. 17-4]
gi|328673295|gb|AEB29341.1| hypothetical protein CAR_c06470 [Carnobacterium sp. 17-4]
Length = 241
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 131/242 (54%), Gaps = 16/242 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
S I GRK AQDAK+ K++ ++ +E+ AVK GGP+P N L V++KAK ++P D VE
Sbjct: 8 SNIQGRKNAQDAKRGKIFQKISREIYMAVKSGGPDPNLNPSLRMVMDKAKSNNMPNDNVE 67
Query: 141 RNIKRASEKGQ-EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+ S G+ E + E +YE YG G +++V LTD + R+ +R GG + +
Sbjct: 68 RAIKKGSTTGENENYDEVIYEGYGPKGTAVLVHTLTDNLNRTGTNIRVAFNKNGGSLGEK 127
Query: 200 GSVMFKFRRARVVNI--KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV + F R + I + D D+D +L L+AG +++ + ++ +++
Sbjct: 128 GSVSYMFDRKGYIAIEREGLDVDEDTMLMSVLEAGGDEM------------ETSDEVFEI 175
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ + D+ L + G + ++P TT+++ ++ L ++I KL E DDV
Sbjct: 176 YTDPSDLPDVRDALEKEGYTLAQAEVT-MIPQTTVQLPEDKKALFNQMIDKLEEDDDVSE 234
Query: 318 VY 319
V+
Sbjct: 235 VF 236
>gi|146338239|ref|YP_001203287.1| hypothetical protein BRADO1143 [Bradyrhizobium sp. ORS 278]
gi|166228892|sp|A4YMC4.1|Y1143_BRASO RecName: Full=Probable transcriptional regulatory protein BRADO1143
gi|146191045|emb|CAL75050.1| conserved hypothetical protein; YebC-like [Bradyrhizobium sp. ORS
278]
Length = 248
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/246 (34%), Positives = 129/246 (52%), Gaps = 27/246 (10%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA K+KL+ ++ +E+ A K G P+P N L A + A+ ++PKD +ER
Sbjct: 10 IMHRKGRQDAMKSKLFGKLAREITVAAKLGTPDPAMNPRLRAAVVAARAENMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A E + E YE YG GGV+++VE LTD R+ + +R GG + + GSV
Sbjct: 70 IKKALGGEGENYAEIRYEGYGPGGVAVIVEALTDNRNRAASDIRSFFTKSGGNLGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R ++ + A D +LD A++AGA+DVI E ++V ++ D
Sbjct: 130 SFMFDRVGIIEFDRSVASDDSVLDAAIEAGADDVIS------------GEGGHEVYASPD 177
Query: 263 NYTDITTKL-------REAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
++ ++ L R+A + ++ P T+ VDDE E +L+ L E DDV
Sbjct: 178 SFHEVAKNLEAKFGEPRKAALTWK--------PQNTVAVDDETGEKLVKLMDLLNEHDDV 229
Query: 316 DAVYTD 321
VY +
Sbjct: 230 QNVYAN 235
>gi|227495491|ref|ZP_03925807.1| protein of hypothetical function DUF28 [Actinomyces coleocanis DSM
15436]
gi|226831038|gb|EEH63421.1| protein of hypothetical function DUF28 [Actinomyces coleocanis DSM
15436]
Length = 253
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/239 (35%), Positives = 131/239 (54%), Gaps = 16/239 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++R+ K + A + GG +P N L ++KA++ VP D ++R +KR
Sbjct: 13 KKAAIDAKRGKLFARLVKNIEVAARTGGGDPAGNPTLYDAIQKARKNSVPGDNIDRAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S E G + +YE YG GV+ +VE LTD R+ + VR G +ADPGSV
Sbjct: 73 GSGAEAGGADWETIMYEGYGPNGVAFLVECLTDNRNRAASDVRVAFTRNNGSLADPGSVA 132
Query: 204 FKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
+ F R V+ + D D+D + LDAGAE+V D E+ ++V+S +
Sbjct: 133 YLFTRKGVIEVPKADGVDEDTIFMTVLDAGAEEVT-----------DEGEK-FEVISEAT 180
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ + T L EAGI +++ S +P T +E+D E ++ +LI L + DDV +YT+
Sbjct: 181 DLVKVRTALVEAGIEYDSAEAS-FVPATKVELDLEGVKKVLKLIDALEDSDDVQNIYTN 238
>gi|347525907|ref|YP_004832655.1| hypothetical protein LRC_14710 [Lactobacillus ruminis ATCC 27782]
gi|345284866|gb|AEN78719.1| Conserved hypothetical protein [Lactobacillus ruminis ATCC 27782]
Length = 243
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 132/241 (54%), Gaps = 18/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +++ A K GGP+P +N L V++KA+ ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKLSRDIYMAAKSGGPDPDANPQLRLVMDKARAANMPKDNIKRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ +A+ + E YE YG GV+I+V LTD R+ +AVR GG + + GSV
Sbjct: 70 LDKATGANGANYEEITYEGYGPAGVAILVHALTDNRNRTASAVRADFNRNGGNLGETGSV 129
Query: 203 MFKFRRARVVNI--KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
F F R + I + D D+D +L+ AL+AGA+D+ +E +++ +
Sbjct: 130 AFMFDRKGYIAIDREDLDVDEDSMLEDALNAGADDL------------QASEEVFEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ D+ +L+ ++ D ++P T+ V + +E + LI +L + DDV V+
Sbjct: 178 PQAFEDVRNELQNK---YDLDTAEITMVPQNTVPVPADKVEQLQRLIDRLEDEDDVSEVF 234
Query: 320 T 320
T
Sbjct: 235 T 235
>gi|377809490|ref|YP_005004711.1| hypothetical protein PECL_744 [Pediococcus claussenii ATCC BAA-344]
gi|361056231|gb|AEV95035.1| hypothetical protein PECL_744 [Pediococcus claussenii ATCC BAA-344]
Length = 245
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 130/239 (54%), Gaps = 15/239 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ R+ +E+ AVK GGP+P++N L +++KA+ ++PKD V+R
Sbjct: 10 IQGRKNAQDAKRGKIFQRISREIYVAVKAGGPDPSANPQLRLMMDKARAANMPKDNVKRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ + S ++ E YE YG G +I+VE LTD R+ AA+R GG + GSV
Sbjct: 70 VDKGSGSDGASYEEITYEGYGPAGTAIIVETLTDNKNRTAAAIRSAFTHHGGSLGAAGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQ--LLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R + I D DKD+ +++ A++AGA+DV ++ +++ +
Sbjct: 130 SYMFDRKGYIVITREDLDKDEDAMMEDAINAGADDV------------QTSDEVFEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
++ ++ L G T + ++P EV ++ ++ LI +L + DDV VY
Sbjct: 178 PKSFAEVRDALEADGYELATAELT-MIPENETEVPEDKVKQYTGLIDELEDNDDVSEVY 235
>gi|227823323|ref|YP_002827295.1| hypothetical protein NGR_c27950 [Sinorhizobium fredii NGR234]
gi|254801469|sp|C3MIH9.1|Y2795_RHISN RecName: Full=Probable transcriptional regulatory protein
NGR_c27950
gi|227342324|gb|ACP26542.1| UPF0082 protein [Sinorhizobium fredii NGR234]
Length = 248
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 130/240 (54%), Gaps = 15/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++S++ +E+ A K G P+P N L ++ AK +PKD +ER
Sbjct: 10 IMHRKGRQDAVRSKMFSKLAREITVAAKSGMPDPAMNPRLRLAIQNAKAQSMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+K+A+ E + E YE YG GGV+++VE LTD R+ + VR + GG + + GSV
Sbjct: 70 VKKAAGGDAENYEEVRYEGYGPGGVAVIVEALTDNRNRTASNVRSMFTKAGGALGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R + + D D++++ A+++GA+DV TDED + ++ +
Sbjct: 130 SFSFDRVGEITYTLSAGDADKVMEAAIESGADDVT--------TDEDG----HTILCGFE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELL-PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
D++ L G+ E + + P T+ VD+E + +LI L + DDV VY++
Sbjct: 178 EIGDVSKALE--GVLGEAETVKAIWKPQNTVPVDEEKAQSLMKLIDNLEDDDDVQNVYSN 235
>gi|422321645|ref|ZP_16402690.1| hypothetical protein HMPREF0005_01918 [Achromobacter xylosoxidans
C54]
gi|317403476|gb|EFV83984.1| hypothetical protein HMPREF0005_01918 [Achromobacter xylosoxidans
C54]
Length = 243
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 130/243 (53%), Gaps = 14/243 (5%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RKG QDAK+ KL++++ +E+ A + GGP+P SN L +KA + ++PKD
Sbjct: 6 KWANIQHRKGRQDAKRGKLWTKIIREITVAARAGGPDPDSNPRLRMAWDKATDANMPKDN 65
Query: 139 VERNIKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
++R I+R A +A+ E YE YG GG +++V+ +TD TR+VA VR GG +
Sbjct: 66 IQRAIQRGAGGADGDAYEEVRYEGYGIGGAAVIVDCMTDNRTRTVAEVRHAFAKNGGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV F F+ + +DQ+++ AL+AGAEDV TDE E +V
Sbjct: 126 QEGSVAFMFKHCGQF-VFAPGTPEDQVMEAALEAGAEDVT--------TDE---EGVIEV 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
V +Y + +AG+ E D G + + E+ E ++L+ L LDDV
Sbjct: 174 VCAPADYAAVRKAFDDAGLKAEVD-GIVMKALNETELAGEDAIKMQKLLDALESLDDVQE 232
Query: 318 VYT 320
VYT
Sbjct: 233 VYT 235
>gi|430376970|ref|ZP_19431103.1| hypothetical protein MOMA_06231 [Moraxella macacae 0408225]
gi|429540107|gb|ELA08136.1| hypothetical protein MOMA_06231 [Moraxella macacae 0408225]
Length = 249
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 139/245 (56%), Gaps = 20/245 (8%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK QDA K K+++++ +E++SA K G P+P +N L AVLEKA ++ KD+++
Sbjct: 8 ANIKHRKAKQDAAKGKIFTKIIREIVSAAKAGDPDPANNPRLRAVLEKANAANMTKDVIK 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I R + G +E++ YE YG GGV+++VE +TD + R+V VR GG +
Sbjct: 68 RAIDRGAGGGDNDNMEEITYEGYGIGGVAVLVETMTDNVNRTVGDVRHAFSKNGGNLGTS 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F + + + A +D ++++AL+AGA D+ E+ E VV+
Sbjct: 128 GSVAYLFNKRGEITVADV-ALEDTVMELALEAGASDI-----------ENDGESLL-VVT 174
Query: 260 TSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVD--DEAMELNKELIAKLLELDDVD 316
+N+ + L+ AGI + DN + P T+ E+ D+A ++ K +I L +LDDV
Sbjct: 175 EPENFGAVMDALQNAGI--KVDNAEVTMSPSTSAEITNIDDAQKILK-MIDMLEDLDDVQ 231
Query: 317 AVYTD 321
VYT+
Sbjct: 232 DVYTN 236
>gi|315037961|ref|YP_004031529.1| hypothetical protein LA2_03805 [Lactobacillus amylovorus GRL 1112]
gi|325956432|ref|YP_004291844.1| hypothetical protein LAC30SC_03680 [Lactobacillus acidophilus 30SC]
gi|385817311|ref|YP_005853701.1| hypothetical protein LAB52_03630 [Lactobacillus amylovorus GRL1118]
gi|312276094|gb|ADQ58734.1| hypothetical protein LA2_03805 [Lactobacillus amylovorus GRL 1112]
gi|325332997|gb|ADZ06905.1| hypothetical protein LAC30SC_03680 [Lactobacillus acidophilus 30SC]
gi|327183249|gb|AEA31696.1| hypothetical protein LAB52_03630 [Lactobacillus amylovorus GRL1118]
Length = 242
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 125/240 (52%), Gaps = 15/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K GGP+P N L V++KA+ ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKVFQKLSREIYMAAKSGGPDPDGNPTLRMVIDKARSNNMPKDNIKRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A +E + E YE Y GGV++ VE LTD R+ + VR GG + GSV
Sbjct: 70 IKKAEGGSEEHYDEITYEGYAPGGVAVFVEALTDNKNRTASDVRVAFTRNGGSLGATGSV 129
Query: 203 MFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R V++ TDAD+DQ+L +DAG +D+ DD Y++ +
Sbjct: 130 AYMFDRKGYIVIDRSTTDADEDQMLLDVMDAGGDDL----QTSDDA--------YEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ + L + G D ++P T V + E + L+ L + DDV VYT
Sbjct: 178 PKEFAAVRDALIKDGYKL-ADAELTMIPQNTTPVPADKKEQFEHLVDALEDNDDVQNVYT 236
>gi|414073536|ref|YP_006998753.1| hypothetical protein uc509_0234 [Lactococcus lactis subsp. cremoris
UC509.9]
gi|413973456|gb|AFW90920.1| hypothetical protein uc509_0234 [Lactococcus lactis subsp. cremoris
UC509.9]
Length = 238
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 130/246 (52%), Gaps = 16/246 (6%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ +A K+G P+P SN+ L V+E+AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGATSKVYAKFGVEIYAAAKQGEPDPESNSSLKFVIERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A G E F++ YE +G G ++ E LT + R++A VR GG
Sbjct: 61 KHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMVITETLTSNVNRTIANVRTTFHKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ G+V + F V I F D D + +I LDA E D + E
Sbjct: 121 IGAAGAVSYMFDNTGV--IVFEGTDPDHIFEIMLDA-----------EVDVRDVTEEEGN 167
Query: 256 KVVST--SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELD 313
VV T +D + I L+EAGI + E++P + +E+ E +E+ + LI L + D
Sbjct: 168 IVVYTEPTDLHKGIAA-LKEAGITEFSTTELEMIPQSEVELSPEDLEIFEGLIDALEDDD 226
Query: 314 DVDAVY 319
DV VY
Sbjct: 227 DVQKVY 232
>gi|381400228|ref|ZP_09925205.1| hypothetical protein KKB_00262 [Kingella kingae PYKK081]
gi|380834710|gb|EIC14538.1| hypothetical protein KKB_00262 [Kingella kingae PYKK081]
Length = 241
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 134/243 (55%), Gaps = 15/243 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +K QDAK+ K+++++ KE+ A K+GG +P +N L ++KA + ++PKD
Sbjct: 6 KWANIQHKKARQDAKRGKIFTKLIKEITIAAKQGGGDPNANPRLRLAMDKAWDNNMPKDN 65
Query: 139 VERNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
V+R I + + + +IE YE YG GG +++V+ +TD TR+VA VR GG +
Sbjct: 66 VQRAIDKGTGNLEGVDYIELRYEGYGIGGAAVMVDCMTDNKTRTVADVRHAFTKHGGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G V F F + +T+AD+D L++ AL+AGAEDV+ V++D E V
Sbjct: 126 TDGCVAFNFEHQGY--LVYTNADEDSLMEAALEAGAEDVL---VDDDGVIE--------V 172
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
++ ++ I L +AG E D + T E+ + E ++LI L +LDDV
Sbjct: 173 ITAPADWAQIKITLEQAGFKAE-DGDVTMRAQNTTELSGDDAEKMQKLIDALEDLDDVQN 231
Query: 318 VYT 320
VYT
Sbjct: 232 VYT 234
>gi|383787008|ref|YP_005471577.1| YebC/PmpR family DNA-binding regulatory protein [Fervidobacterium
pennivorans DSM 9078]
gi|383109855|gb|AFG35458.1| DNA-binding regulatory protein, YebC/PmpR family [Fervidobacterium
pennivorans DSM 9078]
Length = 252
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 134/242 (55%), Gaps = 19/242 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAK++K+++++ +E+I A ++GG NP +N L AVLEKAKE ++PKD +E
Sbjct: 8 ANIKHRKAAQDAKRSKIFTKIIREIIVAAREGGGNPETNPRLRAVLEKAKEANMPKDTIE 67
Query: 141 RNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R+IK+ + E E + E +YE Y GGV++ + LTD R+ +R ++ GG +A+
Sbjct: 68 RSIKKGTGELEGERYEEVIYEAYAPGGVALYILALTDNKNRTAQELRHILSKNGGSLAES 127
Query: 200 GSVMFKFRRARVVNI-KFTDADKDQLLDIALDAGAEDVIE-PPVNEDDTDEDRAERYYKV 257
GSV + F R VV I + AD D+ +A+DAGAED+ E PV V
Sbjct: 128 GSVAWIFERKGVVEIPREKIADMDEFTLLAIDAGAEDIEEGDPV--------------LV 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
++ +N T + L + G FE P ++V E +L+ L + DDV
Sbjct: 174 YTSPENLTTLRENLAKNG--FEGSAKITYKPKNYVKVSGSDAEKVLKLVDALEDNDDVQE 231
Query: 318 VY 319
V+
Sbjct: 232 VF 233
>gi|365879757|ref|ZP_09419162.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 375]
gi|365292255|emb|CCD91693.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 375]
Length = 248
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/246 (34%), Positives = 129/246 (52%), Gaps = 27/246 (10%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA K+KL+ ++ +E+ A K G P+P N L A + A+ ++PKD +ER
Sbjct: 10 IMHRKGRQDAMKSKLFGKLAREITVAAKLGTPDPAMNPRLRAAVVAARAENMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A E + E YE YG GGV+++VE LTD R+ + +R GG + + GSV
Sbjct: 70 IKKALGGEGENYAEIRYEGYGPGGVAVIVEALTDNRNRAASDIRSFFTKSGGNLGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R ++ + A D +LD A++AGA+DVI E ++V ++ D
Sbjct: 130 SFMFDRVGIIEFDRSVASDDAVLDAAIEAGADDVIS------------GEGGHEVYASPD 177
Query: 263 NYTDITTKL-------REAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
++ ++ L R+A + ++ P T+ VDDE E +L+ L E DDV
Sbjct: 178 SFHEVAKNLEAKFGEPRKAALTWK--------PQNTVAVDDETGEKLVKLMDLLNEHDDV 229
Query: 316 DAVYTD 321
VY +
Sbjct: 230 QNVYAN 235
>gi|148258118|ref|YP_001242703.1| hypothetical protein BBta_6910 [Bradyrhizobium sp. BTAi1]
gi|166228831|sp|A5ERK3.1|Y6910_BRASB RecName: Full=Probable transcriptional regulatory protein BBta_6910
gi|146410291|gb|ABQ38797.1| hypothetical protein BBta_6910 [Bradyrhizobium sp. BTAi1]
Length = 248
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/246 (34%), Positives = 129/246 (52%), Gaps = 27/246 (10%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA K+KL+ ++ +E+ A K G P+P N L A + A+ ++PKD +ER
Sbjct: 10 IMHRKGRQDAMKSKLFGKLAREITVAAKLGTPDPAMNPRLRAAVVAARAENMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A E + E YE YG GGV+++VE LTD R+ + +R GG + + GSV
Sbjct: 70 IKKALGGEGENYAEIRYEGYGPGGVAVIVEALTDNRNRAASDIRSYFTKSGGNLGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R ++ + A D +LD A++AGA+DVI E ++V ++ D
Sbjct: 130 SFMFDRVGIIEFDRSVASDDAVLDAAIEAGADDVIS------------GEGGHEVYASPD 177
Query: 263 NYTDITTKL-------REAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
++ ++ L R+A + ++ P T+ VDDE E +L+ L E DDV
Sbjct: 178 SFHEVAKNLEAKFGEPRKAALTWK--------PQNTVSVDDETGEKLLKLMDLLNEHDDV 229
Query: 316 DAVYTD 321
VY +
Sbjct: 230 QNVYAN 235
>gi|85706421|ref|ZP_01037515.1| hypothetical protein ROS217_16040 [Roseovarius sp. 217]
gi|85669194|gb|EAQ24061.1| hypothetical protein ROS217_16040 [Roseovarius sp. 217]
Length = 246
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/243 (35%), Positives = 126/243 (51%), Gaps = 17/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKG QDA +AKL+S+ KE+ A K G P+P N L +++AK +PKD +E
Sbjct: 8 ANIQHRKGRQDAVRAKLFSKFSKEITVAAKMGDPDPDKNPRLRLAIKEAKAQSMPKDNIE 67
Query: 141 RNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
R IK+A E + E YE YG GV+I+VE +TD R+ + VR GG + + G
Sbjct: 68 RAIKKAMGGDAEDYEEIRYEGYGPNGVAIIVEAMTDNRNRTASNVRSTFTKNGGNLGETG 127
Query: 201 SVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
SV F F R V + D D ++ AL+AGAEDV + E + +
Sbjct: 128 SVAFMFERKGEVTYPASVGDADTVMMAALEAGAEDV------------ESGEDGHTIWCA 175
Query: 261 SDNYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+ ++ + L EA N ++L+ P TT E+D E+M+ +LI L + DDV V
Sbjct: 176 DTDLSEAASALEEA---LGESNSTKLVWKPTTTTEMDLESMQKLMKLIEALEDDDDVQRV 232
Query: 319 YTD 321
T+
Sbjct: 233 TTN 235
>gi|367477305|ref|ZP_09476659.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 285]
gi|365270388|emb|CCD89127.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 285]
Length = 248
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/246 (34%), Positives = 129/246 (52%), Gaps = 27/246 (10%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA K+KL+ ++ +E+ A K G P+P N L A + A+ ++PKD +ER
Sbjct: 10 IMHRKGRQDAMKSKLFGKLAREITVAAKLGTPDPAMNPRLRAAVVAARAENMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A E + E YE YG GGV+++VE LTD R+ + +R GG + + GSV
Sbjct: 70 IKKALGGEGENYAEIRYEGYGPGGVAVIVEALTDNRNRAASDIRSYFTKSGGNLGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R ++ + A D +LD A++AGA+DVI E ++V ++ D
Sbjct: 130 SFMFDRVGIIEFDSSVASDDAVLDAAIEAGADDVIS------------GEGGHEVYASPD 177
Query: 263 NYTDITTKL-------REAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
++ ++ L R+A + ++ P T+ VDDE E +L+ L E DDV
Sbjct: 178 SFHEVAKNLEAKFGEPRKAALTWK--------PQNTVAVDDETGEKLVKLMDLLNEHDDV 229
Query: 316 DAVYTD 321
VY +
Sbjct: 230 QNVYAN 235
>gi|414163918|ref|ZP_11420165.1| UPF0082 protein [Afipia felis ATCC 53690]
gi|410881698|gb|EKS29538.1| UPF0082 protein [Afipia felis ATCC 53690]
Length = 248
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 126/242 (52%), Gaps = 19/242 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++ ++ +E+ A K G P+P N L A + A+ ++PKD +ER
Sbjct: 10 IMHRKGKQDAMRSKIFGKLAREITVAAKLGTPDPAMNPRLRAAVIAARAENMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A E++ E YE YG GGV+++VE LTD R+ + +R GG + + GSV
Sbjct: 70 IKKAIGGEGESYDEIRYEGYGPGGVAVIVEALTDNRNRAASDIRSYFTKSGGNLGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F V+ AD D +L+ A+DAGA+DV+ + +D E Y S S+
Sbjct: 130 SFMFDHVGVIEYDAAKADADTMLEAAIDAGADDVV--------SSDDGHEIYTSQASLSE 181
Query: 263 NYTDITTKL---REAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ K R+A + ++ P I V DE E +L+ +L E DDV VY
Sbjct: 182 AAKALEAKFGEPRKAALIWK--------PQNNIAVSDEVGEKLFKLLDQLNEHDDVQNVY 233
Query: 320 TD 321
+
Sbjct: 234 AN 235
>gi|372273405|ref|ZP_09509453.1| hypothetical protein MstaS_20103 [Marinobacterium stanieri S30]
Length = 245
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 136/243 (55%), Gaps = 16/243 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RK AQDAK+ K+++++ +E+ A K+GG NP N L A ++KA ++ KD
Sbjct: 6 KWANIKHRKAAQDAKRGKIFTKLIRELTVAAKEGGGNPEDNPRLRAAVDKALGANMKKDT 65
Query: 139 VERNIKRASEKGQ-EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+E+ I R + G+ + + E YE YG GV+I+VE +TD + R+V+ VR GG +
Sbjct: 66 IEKAIARGAGGGEGDNYDELTYEGYGPNGVAILVECMTDNVNRTVSQVRAAFNKAGGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV + F + ++ DAD+D +++ AL+AGA+DV+ NED + V
Sbjct: 126 TNGSVAYLFEKKGQISFG-DDADEDAIMEAALEAGADDVV---TNEDGS--------IDV 173
Query: 258 VSTSDNYTDITTKLREAGI-PFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
+ + D+ L +AG+ P + G ++P TT+++D + +LI L +LDD
Sbjct: 174 FAPWQEFMDVKQGLMDAGLEPVYAEVG--MIPSTTVDLDVDTGTKALKLIDALEDLDDTQ 231
Query: 317 AVY 319
VY
Sbjct: 232 NVY 234
>gi|219121619|ref|XP_002181160.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407146|gb|EEC47083.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 241
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/250 (36%), Positives = 140/250 (56%), Gaps = 22/250 (8%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGG-PNPTSNTVLAAVLEKAKELDV 134
MGR ++ A K DAKKAK + GK++I AVK+GG P+P +N LA V++ AK V
Sbjct: 1 MGRAAAVRAATKNKTDAKKAKTNAVYGKKLIMAVKQGGSPDPKANKALADVIKGAKANSV 60
Query: 135 PKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGG 194
P D + R IK+ASE F E +E YG+GGVS+++ VLTD R+ + VR V G
Sbjct: 61 PVDNINRAIKKASEGNVGDFKEATFEAYGFGGVSLIINVLTDNNNRATSDVRTAVNKRDG 120
Query: 195 KMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERY 254
K+A+ GSV+F + R ++ ++ D D++ +L+ A++AG +D E +
Sbjct: 121 KIAESGSVLFMYDRKGMIEVQ-QDLDEEAVLEAAIEAGCDD-YELSAGD----------- 167
Query: 255 YKVVSTSDNYTDIT--TKLREAGIPFETDNGSEL-LPITT---IEVDDEAMELNKELIAK 308
V T+ YTD + + + EA D G+++ L T +E DE + N ++I
Sbjct: 168 --VEGTTILYTDPSEVSMMFEALKSLGCDAGAKMSLTYVTKAPVECSDEDFDKNMDIIEA 225
Query: 309 LLELDDVDAV 318
L +LDDVD+V
Sbjct: 226 LEDLDDVDSV 235
>gi|408378756|ref|ZP_11176352.1| hypothetical protein QWE_14207 [Agrobacterium albertimagni AOL15]
gi|407747206|gb|EKF58726.1| hypothetical protein QWE_14207 [Agrobacterium albertimagni AOL15]
Length = 248
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 125/241 (51%), Gaps = 17/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QD ++K++S++ +E+ A K G P+P N L ++ AK +PKD +ER
Sbjct: 10 IMHRKGKQDGIRSKMFSKLAREITVAAKTGLPDPAMNAALRLAVQNAKAQSMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+AS E + YE YG GGV+++VE LTD R+ + VR GG + + GSV
Sbjct: 70 IKKASGADAETYDAIRYEGYGPGGVAVIVETLTDNRNRTASVVRSTFSKAGGALGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F + K + D D++++ A++AGAEDV+ +DED Y
Sbjct: 130 SFSFDHVGEITYKASVGDADKVMEAAIEAGAEDVV--------SDEDGHTIYCA------ 175
Query: 263 NYTDIT--TKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ DI +K EA + + P TIEVD+E +LI L + DDV VY+
Sbjct: 176 -FEDINEVSKALEAVLGGAESVKAIWKPQNTIEVDEEKATSLMKLIDTLEDDDDVQNVYS 234
Query: 321 D 321
+
Sbjct: 235 N 235
>gi|378827393|ref|YP_005190125.1| hypothetical protein SFHH103_02808 [Sinorhizobium fredii HH103]
gi|365180445|emb|CCE97300.1| conserved hyphotetical protein [Sinorhizobium fredii HH103]
Length = 248
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 129/240 (53%), Gaps = 15/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++S++ +E+ A K G P+P N L ++ AK +PKD +ER
Sbjct: 10 IMHRKGRQDAVRSKMFSKLAREITVAAKSGMPDPAMNPRLRLAIQNAKAQSMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+K+A+ E + E YE YG GGV+++VE LTD R+ + VR + GG + + GSV
Sbjct: 70 VKKAAGGDAENYEEVRYEGYGPGGVAVIVEALTDNRNRTASNVRSMFTKAGGALGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R + + D D++++ A+++GA+DV TDED + ++ +
Sbjct: 130 SFSFDRVGEITYTLSAGDADKVMEAAIESGADDVT--------TDEDG----HTILCGFE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELL-PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
D++ L G+ E + + P T+ VD+E + LI L + DDV VY++
Sbjct: 178 EIGDVSKALE--GVLGEAETVKAIWKPQNTVPVDEEKAQSLMRLIDNLEDDDDVQNVYSN 235
>gi|384565582|ref|ZP_10012686.1| DNA-binding regulatory protein, YebC/PmpR family [Saccharomonospora
glauca K62]
gi|384521436|gb|EIE98631.1| DNA-binding regulatory protein, YebC/PmpR family [Saccharomonospora
glauca K62]
Length = 249
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 128/238 (53%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++++ K + A + GG +P N L ++KAK+ VP+D +ER KR
Sbjct: 13 KKAALDAKRGKLFAKLIKNIEVAARTGGGDPEGNPTLYDAIQKAKKNSVPQDNIERARKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
+ E G + YE Y GGV++++E LTD R+ + VR + GG +ADPGSV
Sbjct: 73 GAGEEAGGADWQTITYEGYAPGGVAVLIECLTDNKNRAASEVRTALSRNGGSLADPGSVA 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R VV + D +D +L LDAGAE+V +D E+ Y+++S +
Sbjct: 133 YLFNRKGVVVMPKNDLSEDDVLMAVLDAGAEEV-------NDLGEN-----YEIISEPGD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ T L+EAG +E+ + LP + +D E LI L + DDV VY++
Sbjct: 181 LVAVRTALQEAGYDYESAD-MNFLPSVQVPLDAETARKVFRLIDALEDCDDVQNVYSN 237
>gi|339008538|ref|ZP_08641111.1| hypothetical protein BRLA_c23420 [Brevibacillus laterosporus LMG
15441]
gi|338774338|gb|EGP33868.1| hypothetical protein BRLA_c23420 [Brevibacillus laterosporus LMG
15441]
Length = 248
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 132/242 (54%), Gaps = 16/242 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
AG+KGA D KK Y ++ +++ K GGP+PT+N L A++ A+ +++P D +ER
Sbjct: 7 FAGKKGAADQKKNNQYVKLARQIFVEAKNGGPDPTANLKLKAIIANARAINMPNDNIERA 66
Query: 143 IKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+A++ GQ E++ YE Y GGV+++VE L+D R+ A VR + GG M + GS
Sbjct: 67 IKKATDSGQGDNYEEIRYEGYAPGGVAVIVECLSDNRNRTAADVRAIFGKRGGNMGETGS 126
Query: 202 VMFKFRRARVVNI--KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
V F F R V+ I + + D+D +L AL+AGAED+I V E++ ++V++
Sbjct: 127 VSFMFDRKGVIVIDREEFEVDEDTMLMQALEAGAEDLI---VTEEE---------FEVIT 174
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ L F T+ + +P T+++ E E +++ E DDV VY
Sbjct: 175 HPHELEQVKHALETESYKF-TNAEIQWIPQNTVKISGEDAEKILKMMEAFEENDDVQNVY 233
Query: 320 TD 321
+
Sbjct: 234 AN 235
>gi|323339448|ref|ZP_08079729.1| glucose-1-phosphate adenylyl transferase [Lactobacillus ruminis
ATCC 25644]
gi|417972860|ref|ZP_12613745.1| hypothetical protein ANHS_427 [Lactobacillus ruminis ATCC 25644]
gi|323093121|gb|EFZ35712.1| glucose-1-phosphate adenylyl transferase [Lactobacillus ruminis
ATCC 25644]
gi|346330766|gb|EGX99000.1| hypothetical protein ANHS_427 [Lactobacillus ruminis ATCC 25644]
Length = 243
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 132/241 (54%), Gaps = 18/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +++ A K GGP+P +N L V++KA+ ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKLSRDIYMAAKSGGPDPDANPQLRLVMDKARAANMPKDNIKRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ +A+ + E YE YG GV+I+V LTD R+ +AVR GG + + GSV
Sbjct: 70 LDKATGANGANYEEITYEGYGPAGVAILVHALTDNRNRTASAVRADFNRNGGNLGETGSV 129
Query: 203 MFKFRRARVVNI--KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
F F R + I + D D+D +L+ AL+AGA+D+ +E +++ +
Sbjct: 130 AFMFDRKGYIAIAREDLDVDEDAMLEDALNAGADDL------------QASEEVFEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ D+ +L+ ++ D ++P T+ V + +E + LI +L + DDV V+
Sbjct: 178 PQAFEDVRNELQNK---YDLDTAEITMVPQNTVPVPADKVEQLQRLIDRLEDEDDVSEVF 234
Query: 320 T 320
T
Sbjct: 235 T 235
>gi|344203758|ref|YP_004788901.1| hypothetical protein [Muricauda ruestringensis DSM 13258]
gi|343955680|gb|AEM71479.1| UPF0082 protein yeeN [Muricauda ruestringensis DSM 13258]
Length = 236
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 132/244 (54%), Gaps = 13/244 (5%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR RK + A +K ++R+GK+++ AVK+GGP+P +N+ L AV++ AK +++P
Sbjct: 1 MGRAFEFRKARKMKRWAAMSKAFTRIGKDIVMAVKEGGPDPDANSKLRAVIQNAKSVNMP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
KD +ER IKRAS+K Q + E ++E Y G++I++E TD TR+VA +R C G
Sbjct: 61 KDNIERAIKRASDKNQGDYKEVLFEGYAPHGIAILIETATDNNTRTVANIRSYFNKCNGS 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV F F I D ++L +D GAE+V DED Y
Sbjct: 121 LGTSGSVEFMFDHTCNFTINGEGIDPEELELEMIDFGAEEVF--------VDEDGIHIY- 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+ +N+ I +L I +G + +P T E+++E + ++L+ K+ E DDV
Sbjct: 172 ---APFENFGAIQKELESREIEI-VSSGFDRIPQVTKELNEEEVADVEKLLEKIEEDDDV 227
Query: 316 DAVY 319
V+
Sbjct: 228 QNVF 231
>gi|15672214|ref|NP_266388.1| hypothetical protein L31280 [Lactococcus lactis subsp. lactis
Il1403]
gi|281490720|ref|YP_003352700.1| hypothetical protein LLKF_0226 [Lactococcus lactis subsp. lactis
KF147]
gi|385837250|ref|YP_005874880.1| hypothetical protein YeeN [Lactococcus lactis subsp. cremoris A76]
gi|33517095|sp|Q9CIX4.1|YCDB_LACLA RecName: Full=Probable transcriptional regulatory protein YcdB
gi|12723090|gb|AAK04330.1|AE006261_1 conserved hypothetical protein [Lactococcus lactis subsp. lactis
Il1403]
gi|281374489|gb|ADA64010.1| Hypothetical protein LLKF_0226 [Lactococcus lactis subsp. lactis
KF147]
gi|358748478|gb|AEU39457.1| hypothetical protein YeeN [Lactococcus lactis subsp. cremoris A76]
Length = 238
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 130/246 (52%), Gaps = 16/246 (6%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ +A K+G P+P SN+ L V+E+AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGATSKVYAKFGVEIYAAAKQGEPDPESNSSLKFVIERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A G E F++ YE +G G ++ E LT + R++A VR GG
Sbjct: 61 KHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMVIAETLTSNVNRTIANVRTTFHKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ G+V + F V I F D D + +I LDA E D + E
Sbjct: 121 IGAAGAVSYMFDNTGV--IVFEGTDPDHIFEILLDA-----------EVDVRDVTEEEGN 167
Query: 256 KVVST--SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELD 313
VV T +D + I L+EAGI + E++P + +E+ E +E+ + LI L + D
Sbjct: 168 IVVYTEPTDLHKGIAA-LKEAGITEFSTTELEMIPQSEVELSPEDLEIFEGLIDALEDDD 226
Query: 314 DVDAVY 319
DV VY
Sbjct: 227 DVQKVY 232
>gi|427405777|ref|ZP_18895982.1| YebC/PmpR family DNA-binding regulatory protein [Selenomonas sp.
F0473]
gi|425708618|gb|EKU71657.1| YebC/PmpR family DNA-binding regulatory protein [Selenomonas sp.
F0473]
Length = 242
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 137/249 (55%), Gaps = 27/249 (10%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +KGA DA + K+ +++G+E+ AV+ GG +PT N L L KAK ++PKD
Sbjct: 8 ANIKRKKGANDAIRGKITTKIGREITIAVRMGGGDPTGNMRLKLALSKAKANNIPKD--- 64
Query: 141 RNIKRASEKGQEA-----FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
NI RA +KG A + E VYE YG GG ++++++LTD R+ A VR + GG
Sbjct: 65 -NINRAIQKGLGATEGSNYDEVVYEGYGPGGTAVLLDILTDNRNRTAADVRHLFSKYGGN 123
Query: 196 MADPGSVMFKFRRARVVNI-KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAER- 253
+ G V + F++ V + K + D+D LL++ LDAGAED+ RAE
Sbjct: 124 LGQDGCVSWMFKKKAVFIVEKDSFNDEDALLELVLDAGAEDM-------------RAEED 170
Query: 254 YYKVVSTSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLEL 312
+++++ D + I T L E GI ET + ++P TT+ + + E + LI L +
Sbjct: 171 IFEIIAAPDTFESIETALGEKGI--ETASAEVTMVPDTTVSLSENDAEKMQNLIDALEDN 228
Query: 313 DDVDAVYTD 321
DDV VY++
Sbjct: 229 DDVQNVYSN 237
>gi|46446962|ref|YP_008327.1| hypothetical protein pc1328 [Candidatus Protochlamydia amoebophila
UWE25]
gi|60390917|sp|Q6MBJ7.1|Y1328_PARUW RecName: Full=Probable transcriptional regulatory protein pc1328
gi|46400603|emb|CAF24052.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 245
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 125/227 (55%), Gaps = 17/227 (7%)
Query: 97 LYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIE 156
++SR+ KE+ISAVK GG + +N L L+KA++ ++P + ++RNIK+AS QE + E
Sbjct: 24 IFSRIAKEIISAVKLGGADQKNNPRLRLALQKARDANMPNENIDRNIKKASSADQEDYHE 83
Query: 157 KVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKF 216
YE+YG+GGV IVV+V+TD R + +R GG +A PG+V F F R ++ I
Sbjct: 84 MTYELYGHGGVGIVVDVMTDNKNRISSDMRIATNKRGGTVATPGAVTFNFDRKGILQISK 143
Query: 217 TDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGI 276
+A +++L A +AGAED E D D + + + + + + G
Sbjct: 144 KNAIEEELFLAATEAGAEDF------EVDND------VFIITTDPSHLYSVKDAINHLGF 191
Query: 277 PFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
E +EL +P T +E E + N LI L EL+DVDAVY +
Sbjct: 192 ACEE---AELGMIPRTYVECSVETAKDNLALIEWLEELEDVDAVYHN 235
>gi|420241253|ref|ZP_14745402.1| DNA-binding regulatory protein, YebC/PmpR family [Rhizobium sp.
CF080]
gi|398072049|gb|EJL63282.1| DNA-binding regulatory protein, YebC/PmpR family [Rhizobium sp.
CF080]
Length = 248
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 130/239 (54%), Gaps = 13/239 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QD+ ++K++S++ +E+ A K G P+PT N L ++ AK +PKD ++R
Sbjct: 10 IMHRKGKQDSIRSKMFSKLAREITVAAKTGLPDPTMNAALRLAIQNAKAQSMPKDNIDRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+AS E + YE YG GG +++VE LTD R+ + VR + GG + + GSV
Sbjct: 70 IKKASGSDAENYDSVRYEGYGPGGTAVIVEALTDNRNRTASNVRSIFTKAGGVLGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F + K + D D++++ A++AGA+DV TDED + ++ +
Sbjct: 130 SFSFDHVGEITYKASVGDADKVMEAAIEAGADDVT--------TDEDG----HTIICAFE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ +++ L EA + P TIEVD+E + +LI L + DDV +VY++
Sbjct: 178 SLGEVSKAL-EATLGQAETVKVIWRPQNTIEVDEEKAQSLLKLIDNLEDDDDVQSVYSN 235
>gi|392954891|ref|ZP_10320442.1| hypothetical protein WQQ_45140 [Hydrocarboniphaga effusa AP103]
gi|391857548|gb|EIT68079.1| hypothetical protein WQQ_45140 [Hydrocarboniphaga effusa AP103]
Length = 239
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/246 (35%), Positives = 138/246 (56%), Gaps = 16/246 (6%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR S I GRK A DA KAK+++++ +E+ AV+ GP+P N L + +A ++++
Sbjct: 1 MGRGPS-IEGRKNAADAVKAKVFTKLIREISLAVRASGPDPAGNPRLRLAVSRALDVNMT 59
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
KD +E IKRAS +G +A E YE YG GG++++V+ +TD TR+VA VR GG
Sbjct: 60 KDKIETAIKRASGEGADAQQEVRYEGYGPGGIAVIVDCVTDNPTRTVADVRHAFSKHGGN 119
Query: 196 MADPGSVMFKFRRARVV--NIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAER 253
M GSV F+F A + ++ ++++L+IAL+AGA+DV TD
Sbjct: 120 MGTSGSVAFQFAEAGQLWFDVSANPELEEKILEIALEAGADDV--------QTDGG---- 167
Query: 254 YYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELD 313
+ +VV+ D + + L +A + ++ P + V+ EA E ++LI +L ELD
Sbjct: 168 WCEVVTQPDVFETVRKALVDAKLEPAQARVTQ-RPSNRVAVEGEAAETLQKLIDRLEELD 226
Query: 314 DVDAVY 319
D VY
Sbjct: 227 DTQEVY 232
>gi|164687570|ref|ZP_02211598.1| hypothetical protein CLOBAR_01211 [Clostridium bartlettii DSM
16795]
gi|164603344|gb|EDQ96809.1| DNA-binding regulatory protein, YebC/PmpR family [Clostridium
bartlettii DSM 16795]
Length = 239
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 133/246 (54%), Gaps = 16/246 (6%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR + I RKG QDAK+A ++++ + + A ++GG +P N L ++KAK ++P
Sbjct: 1 MGRIGN-IINRKGKQDAKRASVFTKHARAITVAAREGGADPEYNAALKTAIDKAKADNMP 59
Query: 136 KDIVERNI-KRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGG 194
D ++R I K A G E + YE YG GGV+++VE LTD R+ +R GG
Sbjct: 60 NDNIKRAIDKGAGAGGGEDYFSNTYEGYGPGGVAVIVETLTDNKNRTAGNIRYYFDKNGG 119
Query: 195 KMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERY 254
+ G V F F R + I + ++QL+D AL+AGA+D+I T+ED
Sbjct: 120 NLGTTGCVGFMFDRKGQILIAAENVSEEQLMDDALEAGADDII--------TEEDG---- 167
Query: 255 YKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLEL-D 313
++VV+ +++ + L E G F + + +L+P TT +D+E + E + LLE D
Sbjct: 168 FEVVTAPEDFNAVRDALVEKGYEFVSAD-IKLIPQTTTVLDNEGQVKSMEKLIDLLEEDD 226
Query: 314 DVDAVY 319
DV VY
Sbjct: 227 DVQNVY 232
>gi|420161409|ref|ZP_14668174.1| protein of hypothetical function DUF28 [Weissella koreensis KCTC
3621]
gi|420161546|ref|ZP_14668310.1| protein of hypothetical function DUF28 [Weissella koreensis KCTC
3621]
gi|394745084|gb|EJF33980.1| protein of hypothetical function DUF28 [Weissella koreensis KCTC
3621]
gi|394745386|gb|EJF34270.1| protein of hypothetical function DUF28 [Weissella koreensis KCTC
3621]
Length = 241
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 133/242 (54%), Gaps = 17/242 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +++ +A K GG +P N L V+EKAK ++PKD V+R
Sbjct: 10 IQGRKNAQDAKRGKIFQKLSRDLYTAAKSGGVDPDGNPGLRLVMEKAKAANMPKDNVQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ +AS G + E YE YG G++++VE LTD R+ + VR K GG++ GSV
Sbjct: 70 LDKASGAGGANYQELTYEGYGPAGIAVLVETLTDNTNRTASNVRSAFKHAGGELGTSGSV 129
Query: 203 MFKFRRARVVNI-KFTDA---DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
F+F R + I + DA D+DQL + L+AGA+D+ T +D+ +++
Sbjct: 130 AFQFERKGYIEIARGEDAPEIDEDQLFEDMLEAGADDM--------KTYDDQ----FEIY 177
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+ + ++ L G D + ++ +EV ++ E +L+ +L DDV AV
Sbjct: 178 TDPKVFPEVRDALESKGYTLINDEVT-MIADNPMEVPEDNAESLAKLVEELEADDDVSAV 236
Query: 319 YT 320
+T
Sbjct: 237 FT 238
>gi|294056004|ref|YP_003549662.1| hypothetical protein [Coraliomargarita akajimensis DSM 45221]
gi|293615337|gb|ADE55492.1| protein of unknown function DUF28 [Coraliomargarita akajimensis DSM
45221]
Length = 249
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 129/237 (54%), Gaps = 19/237 (8%)
Query: 87 KGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRA 146
KGA DAK+ KL+S + K++ A + GG +P N L + KAK ++P D ++R IK+
Sbjct: 14 KGAADAKRGKLFSVLSKDITLAARSGGGDPGFNPRLRTCILKAKAANMPADNIDRAIKKG 73
Query: 147 S-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 205
+ E + E +YE YG GGV ++VE+ TD RS + VR + GG +A G+V F+
Sbjct: 74 TGELPGVVYEEVLYEGYGAGGVGVIVEITTDNKNRSASEVRSTMGKNGGNLAGVGAVAFQ 133
Query: 206 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 265
F R I+ + D++ L+D+AL+AGAED++ A+ +++V+ Y
Sbjct: 134 FDRKGQFIIEASQTDEESLMDVALEAGAEDIV------------TADDHFEVICPMTEYD 181
Query: 266 DITTKLREAGIPFETDNGSELLPITTIEV---DDEAMELNKELIAKLLELDDVDAVY 319
++ L E GI + SEL I IEV D + L+ KL +L+DV AV+
Sbjct: 182 SVSQALEEKGIETLS---SELAYIPNIEVPVSDKDTARKVLHLVEKLDDLEDVKAVH 235
>gi|224003587|ref|XP_002291465.1| hypothetical protein THAPSDRAFT_34698 [Thalassiosira pseudonana
CCMP1335]
gi|220973241|gb|EED91572.1| hypothetical protein THAPSDRAFT_34698 [Thalassiosira pseudonana
CCMP1335]
Length = 241
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/250 (36%), Positives = 137/250 (54%), Gaps = 22/250 (8%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGG-PNPTSNTVLAAVLEKAKELDV 134
MGR ++ A KG DAKKAK+ + GK++I AVK+GG +P +N L +++ AK+ V
Sbjct: 1 MGRAAAVRAATKGKTDAKKAKVNAYYGKKIIMAVKQGGSADPIANRQLGELIKAAKQNSV 60
Query: 135 PKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGG 194
P D + R IKRA+EK F E +E YG+GG S+++ VL+D RS A V+ V G
Sbjct: 61 PVDNINRAIKRATEKDAGDFSEATFEAYGFGGASLIINVLSDNSNRSTADVKTAVNKLKG 120
Query: 195 KMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERY 254
KMA+ GSV+F + + I D+++LL A+DAG ED+ + E D +
Sbjct: 121 KMAEQGSVLFMYDLKGKIEIPAV-VDEEELLMAAIDAGVEDM---ELVEGDEE------- 169
Query: 255 YKVVSTSDNYTDI--TTKLREAGIPFETDNGSEL----LPITTIEVDDEAMELNKELIAK 308
TS YTD T+ + +A + GS++ + +E +E + N +I
Sbjct: 170 ----GTSIVYTDPKETSAMFDAVKAIGLEEGSKMGLAHISKAPVECTEEDFDKNMAIIEA 225
Query: 309 LLELDDVDAV 318
L ELDDVD+V
Sbjct: 226 LEELDDVDSV 235
>gi|328953688|ref|YP_004371022.1| hypothetical protein Desac_2010 [Desulfobacca acetoxidans DSM
11109]
gi|328454012|gb|AEB09841.1| UPF0082 protein yeeN [Desulfobacca acetoxidans DSM 11109]
Length = 250
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 138/247 (55%), Gaps = 18/247 (7%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ S I +KGA DAK+ K++S++ KE++ A + GG +P+ NT L A + AK ++PK+
Sbjct: 6 KWSTIKRKKGAADAKRGKIFSKLNKEIMVAARIGGSDPSGNTRLRAAIAAAKAENMPKEN 65
Query: 139 VERNIKRASEK--GQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKM 196
++R IK+ + + G AF E YE YG GV+++VE LTD R+V+ VR + GG M
Sbjct: 66 IDRAIKKGAGELEGANAFEEVFYEGYGPSGVALLVESLTDNKNRTVSEVRHLFSKYGGSM 125
Query: 197 ADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
+ G V + F + V+ +D+LL+ AL+AGAED+ E Y+
Sbjct: 126 GEAGCVAWMFDKKGVIAFSRDAVSEDELLEAALEAGAEDL------------QVGESEYE 173
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDE--AMELNKELIAKLLELDD 314
V++ ++ + L E G +E ++ P TTI +++E A +L K L+ L +LDD
Sbjct: 174 VITDLASFEKVKNALEEQGFKWEVAE-IQMHPKTTIRLEEEKSAQQLLK-LMEMLEDLDD 231
Query: 315 VDAVYTD 321
V V+ +
Sbjct: 232 VQHVFAN 238
>gi|52081262|ref|YP_080053.1| hypothetical protein BL01150 [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|319644772|ref|ZP_07999005.1| hypothetical protein HMPREF1012_00038 [Bacillus sp. BT1B_CT2]
gi|404490141|ref|YP_006714247.1| hypothetical protein BLi02909 [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|423683242|ref|ZP_17658081.1| hypothetical protein MUY_03095 [Bacillus licheniformis WX-02]
gi|67462036|sp|Q65GN7.1|Y2909_BACLD RecName: Full=Probable transcriptional regulatory protein
BLi02909/BL01150
gi|52004473|gb|AAU24415.1| conserved protein YrbC [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|52349143|gb|AAU41777.1| DNA-binding regulatory protein YrbC [Bacillus licheniformis DSM 13
= ATCC 14580]
gi|317392581|gb|EFV73375.1| hypothetical protein HMPREF1012_00038 [Bacillus sp. BT1B_CT2]
gi|383440016|gb|EID47791.1| hypothetical protein MUY_03095 [Bacillus licheniformis WX-02]
Length = 240
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 134/242 (55%), Gaps = 16/242 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RK AQDAK+ K++ ++ KE+ A K+GGP+P SN L V++KAK ++P D ++R
Sbjct: 10 IQRRKNAQDAKRGKIFMKLAKEIYVAAKEGGPDPESNASLRLVIDKAKNANMPNDNIDRA 69
Query: 143 IKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+AS + +++ E YE YG GV+++V+ LTD R+ +VR GG + + G
Sbjct: 70 IKKASGSQDGKSYEEITYEGYGPSGVAVMVKCLTDNKNRTATSVRTAFSKNGGSLGETGC 129
Query: 202 VMFKFRRARVVNIKFTDA--DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
V + F R + I+ D D+++ + +DAGAE++ + +E +++ +
Sbjct: 130 VSYMFDRKGYIAIEREDLEIDEEEFMLEVIDAGAEEL------------ETSEELFEIYT 177
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ + ++ L E G T + ++P T EVD+ E ++LI L + DDV VY
Sbjct: 178 EPEQFEEVKKSLEERGYKLATSEIT-MVPQTYAEVDEALQEKVEKLIDVLEDDDDVQEVY 236
Query: 320 TD 321
T+
Sbjct: 237 TN 238
>gi|456062822|ref|YP_007501792.1| hypothetical protein D521_0488 [beta proteobacterium CB]
gi|455440119|gb|AGG33057.1| hypothetical protein D521_0488 [beta proteobacterium CB]
Length = 239
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/242 (35%), Positives = 134/242 (55%), Gaps = 14/242 (5%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKG QD K+ K+++++ KE+ A K GG + +N L ++KAK+ ++P D V+
Sbjct: 8 ANIQHRKGRQDEKRGKIWTKLIKEITVAAKLGGGDIATNPRLRLAIDKAKDANMPNDNVQ 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I+R + + E++ YE YG G +I+V+ LTD TR+VA VR GG M
Sbjct: 68 RAIQRGTGSLEGVNYEEIRYEGYGLNGAAIIVDCLTDNRTRTVAEVRHAFAKNGGNMGAE 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV F F+ + I ++DQL++IALDAGAEDVI T ED + +V++
Sbjct: 128 GSVAFMFKHCGQM-IFAPGTNEDQLMEIALDAGAEDVI--------THEDGS---LEVLT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
++ + L +AG+ E + + P T E + E E ++L+ L LDDV V+
Sbjct: 176 PVPDFPRVQDVLIQAGLKAEIATVT-MRPETETEFEGEQAESMQKLLDALENLDDVQEVF 234
Query: 320 TD 321
T+
Sbjct: 235 TN 236
>gi|405370927|ref|ZP_11026653.1| hypothetical protein YebC [Chondromyces apiculatus DSM 436]
gi|397089267|gb|EJJ20195.1| hypothetical protein YebC [Myxococcus sp. (contaminant ex DSM 436)]
Length = 249
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 136/244 (55%), Gaps = 14/244 (5%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
R SKI +K A A K +LYS++ KE+ A + GG P+ N L L A+E ++PKD
Sbjct: 6 RWSKIKRQKAAMGATKGRLYSKVIKEITVASRLGGGEPSGNARLRVALGLAREANIPKDT 65
Query: 139 VERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ER IK+ + E E++ E YE YG GGV+I+VE LTD R+ A +R GG +
Sbjct: 66 IERAIKKGTGELEGESYEEVTYEGYGPGGVAILVECLTDNRNRTAADMRSTFNAYGGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G+V + F++ V+++K + DQL++ A+DAGAEDVI + D+ E R
Sbjct: 126 AEGAVAWMFQKKGVISVKHGPTE-DQLMEQAIDAGAEDVI---MLGDEGAEVR------- 174
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ +D +T + ++L+E G+P +P T+ +D + + +L+ L E DDV
Sbjct: 175 CAAADLHT-VGSRLQETGLPLGQQRWV-FIPQNTVALDMDTAKRLLKLLDALEENDDVQN 232
Query: 318 VYTD 321
V+ +
Sbjct: 233 VHGN 236
>gi|383827888|ref|ZP_09982977.1| DNA-binding regulatory protein, YebC/PmpR family [Saccharomonospora
xinjiangensis XJ-54]
gi|383460541|gb|EID52631.1| DNA-binding regulatory protein, YebC/PmpR family [Saccharomonospora
xinjiangensis XJ-54]
Length = 249
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 129/238 (54%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++++ K + A + GG +P N L ++KAK+ VP+D +ER KR
Sbjct: 13 KKAALDAKRGKLFAKLIKNIEVAARTGGGDPEGNPTLYDAIQKAKKNSVPQDNIERARKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
+ E G + YE Y GGV++++E LTD R+ + VR + GG +ADPGSV
Sbjct: 73 GAGEEAGGADWQNITYEGYAPGGVAVLIECLTDNKNRAASEVRTALTRNGGSLADPGSVA 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R VV + D +D +L LDAGAE+V +D E+ Y+++S + +
Sbjct: 133 YLFNRKGVVLMPKNDLSEDDVLMAVLDAGAEEV-------NDLGEN-----YEIISEAGD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ T L+EAG +E+ + LP + +D + LI L + DDV VY++
Sbjct: 181 MVAVRTALQEAGYDYESAD-MNFLPSVNVPLDADNARKVFRLIEALEDCDDVQNVYSN 237
>gi|329120304|ref|ZP_08248972.1| YebC like protein [Neisseria bacilliformis ATCC BAA-1200]
gi|327462645|gb|EGF08968.1| YebC like protein [Neisseria bacilliformis ATCC BAA-1200]
Length = 282
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 137/248 (55%), Gaps = 19/248 (7%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +K DA++ K+++R+ KE+ A + GG +P SN L ++KA + ++PKD
Sbjct: 47 KWANIQHKKARADAQRGKIFTRLIKEITVAARLGGGDPNSNPRLRLAMDKAWDANMPKDN 106
Query: 139 VERNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
V+R I + + + A +IE YE YG GG +++V+ +TD TR+VA VR GG +
Sbjct: 107 VQRAIDKGTGNVEGAEYIELRYEGYGIGGAALMVDCMTDNKTRTVADVRHAFSKNGGNLG 166
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G V F F + FTDAD+D L++ AL+AGAEDV+ +DE E +V
Sbjct: 167 TDGCVAFNFVHQGY--LVFTDADEDALMEAALEAGAEDVL--------SDE---EGIIEV 213
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPIT--TIEVDDEAMELNKELIAKLLELDDV 315
++ ++ + KL AG F++ +G + T+ ++A ++ K LI L LDDV
Sbjct: 214 ITAPADWAGVKAKLEAAG--FKSQDGDVTMRAQNETVLTGEDAAKMQK-LIDALENLDDV 270
Query: 316 DAVYTDQI 323
VYT +
Sbjct: 271 QNVYTSAV 278
>gi|299134167|ref|ZP_07027360.1| protein of unknown function DUF28 [Afipia sp. 1NLS2]
gi|298590914|gb|EFI51116.1| protein of unknown function DUF28 [Afipia sp. 1NLS2]
Length = 248
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 126/242 (52%), Gaps = 19/242 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++ ++ +E+ A K G P+P N L A + A+ ++PKD +ER
Sbjct: 10 IMHRKGKQDAMRSKIFGKLAREITVAAKLGTPDPAMNPRLRAAVIAARAENMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A E++ E YE YG GGV+++VE LTD R+ + +R GG + + GSV
Sbjct: 70 IKKAIGGEGESYDEIRYEGYGPGGVAVIVEALTDNRNRAASDIRSYFTKSGGNLGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F V+ AD + +L+ A+DAGA+DV+ + ED E Y S S+
Sbjct: 130 SFMFDHVGVIEYDAAKADAETMLEAAIDAGADDVV--------SSEDGHEIYTSQASLSE 181
Query: 263 NYTDITTKL---REAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ K R+A + ++ P I V DE E +L+ +L E DDV VY
Sbjct: 182 AAKALEAKFGEPRKAALIWK--------PQNNIAVSDEVGEKLFKLLDQLNEHDDVQNVY 233
Query: 320 TD 321
+
Sbjct: 234 AN 235
>gi|359799026|ref|ZP_09301595.1| hypothetical protein KYC_18815 [Achromobacter arsenitoxydans SY8]
gi|359363164|gb|EHK64892.1| hypothetical protein KYC_18815 [Achromobacter arsenitoxydans SY8]
Length = 243
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 130/243 (53%), Gaps = 14/243 (5%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RKG QDAK+ KL++++ +E+ A + GGP+P SN L +KA + ++PKD
Sbjct: 6 KWANIQHRKGRQDAKRGKLWTKIIREITVAARAGGPDPDSNPRLRMAWDKATDANMPKDN 65
Query: 139 VERNIKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
++R I+R A +A+ E YE YG GG +++V+ +TD TR+VA VR GG +
Sbjct: 66 IQRAIQRGAGGADGDAYEEVRYEGYGIGGAAVIVDCMTDNRTRTVAEVRHAFAKNGGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV F F+ + +DQ+++ AL+AGAEDV TDE E +V
Sbjct: 126 QEGSVAFMFKHCGQF-VFAPGTPEDQVMEAALEAGAEDVT--------TDE---EGVIEV 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
V +Y + +AG+ E D G + + E+ E ++L+ L LDDV
Sbjct: 174 VCAPADYAAVRKAFDDAGLKAEVD-GIVMKALNETELAGEDAIKMQKLLDALEGLDDVQE 232
Query: 318 VYT 320
VYT
Sbjct: 233 VYT 235
>gi|357639165|ref|ZP_09137038.1| DNA-binding regulatory protein, YebC/PmpR family [Streptococcus
urinalis 2285-97]
gi|418417156|ref|ZP_12990354.1| UPF0082 protein [Streptococcus urinalis FB127-CNA-2]
gi|357587619|gb|EHJ57027.1| DNA-binding regulatory protein, YebC/PmpR family [Streptococcus
urinalis 2285-97]
gi|410873212|gb|EKS21148.1| UPF0082 protein [Streptococcus urinalis FB127-CNA-2]
Length = 238
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 130/244 (53%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ A K+G P+P SN+ L VLE+AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGANSKVYAKFGVEIYVAAKQGDPDPESNSALKFVLERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A E F+E YE +G G I+V+ LT + R+ A VR GG
Sbjct: 61 KHVIDKAIDKAKGNTDETFVEGCYEGFGPNGSMIIVDTLTSNVNRTAANVRSAYGKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
M GSV + F + V I F D D + ++ L+A E V++ ++DE Y
Sbjct: 121 MGASGSVSYMFDKKGV--IVFAGDDADSIFELLLEADVE------VDDVESDEGTITVY- 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+ +D + I LRE+GI E++P + + ++ E +E ++LI L DDV
Sbjct: 172 --TAPTDLHKGIEA-LRESGISEFQVTELEMIPQSEVTLEGEDLETFEKLIDALEADDDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QKVY 232
>gi|255658185|ref|ZP_05403594.1| glucose-1-phosphate adenylyltransferase [Mitsuokella multacida DSM
20544]
gi|260849493|gb|EEX69500.1| glucose-1-phosphate adenylyltransferase [Mitsuokella multacida DSM
20544]
Length = 244
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/249 (35%), Positives = 136/249 (54%), Gaps = 27/249 (10%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +KGA DA + K+ +++G+E+ AV+ GG +PT N L L KAK ++PKD
Sbjct: 8 ANIKRKKGANDAIRGKITTKIGREITIAVRMGGADPTGNMRLKLALSKAKSNNIPKD--- 64
Query: 141 RNIKRASEKG-----QEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
NIKRA EKG + E +YE YG GG ++++++LTD R+ A VR + GG
Sbjct: 65 -NIKRAIEKGLGNSESGTYEELMYEGYGPGGTAVMLDILTDNRNRTAADVRHLFSKFGGN 123
Query: 196 MADPGSVMFKFRRARVVNI-KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAE-R 253
+ G V + F++ V + K T D+D L++I LDAGAED+ +AE
Sbjct: 124 LGQDGCVAWMFKKKAVFIVEKETFDDEDALMEIVLDAGAEDM-------------KAEDE 170
Query: 254 YYKVVSTSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLEL 312
+++ + D + DI L E GI ET + ++P TT+ + + E + LI L E
Sbjct: 171 VFEITAEPDAFDDIEKALGEKGI--ETASAEVTMVPDTTVHLAGKDAEKMQNLIDALEEN 228
Query: 313 DDVDAVYTD 321
DDV VY++
Sbjct: 229 DDVQNVYSN 237
>gi|384085949|ref|ZP_09997124.1| hypothetical protein AthiA1_10639 [Acidithiobacillus thiooxidans
ATCC 19377]
Length = 250
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/243 (36%), Positives = 138/243 (56%), Gaps = 17/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
S I +K +DAK+ K+++R+ +E+ A + GG +P SN+ L L+KA ++ KD +E
Sbjct: 8 STIKFKKALKDAKRGKIFTRLIREITVAARAGGGDPGSNSRLRLALDKAYGANMTKDTIE 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R +KR + + + E+V YE YG GV+I++E +TD R+VA +R + GG M
Sbjct: 68 RAVKRGTGELEGVDYEEVTYEGYGPAGVAILIETMTDNKVRTVAEIRHIFSKRGGNMGTA 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV ++F++ ++ DAD+D++L+ AL+AGAEDV VNE ER +
Sbjct: 128 GSVAYQFKKLGLIAFP-GDADEDKILEAALEAGAEDV----VNE-------GERIAVYTA 175
Query: 260 TSDNYTDITTKLREAGI-PFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+D ++ + L AG+ P E++ ++P TIEV E E LI L E DDV V
Sbjct: 176 ATDLHS-VVQALEAAGLQPEESE--LTMIPENTIEVSGEEAEKLLRLIDFLEENDDVQNV 232
Query: 319 YTD 321
Y +
Sbjct: 233 YAN 235
>gi|365827406|ref|ZP_09369267.1| hypothetical protein HMPREF0975_01050 [Actinomyces sp. oral taxon
849 str. F0330]
gi|365265161|gb|EHM94937.1| hypothetical protein HMPREF0975_01050 [Actinomyces sp. oral taxon
849 str. F0330]
Length = 254
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/238 (36%), Positives = 127/238 (53%), Gaps = 16/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++R+ K + A + GG +PT N L ++KAK+ VP D + R +KR
Sbjct: 13 KKAAIDAKRGKLFARLIKNIEVAARTGGGDPTGNPTLFDAIQKAKKNSVPADNITRAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S E G + +YE YG GGV+ +VE LTD R+ + VR GG +ADPGSV
Sbjct: 73 GSGEEAGGADWQTIMYEGYGPGGVAFLVECLTDNRNRAASDVRVAFSRNGGNLADPGSVA 132
Query: 204 FKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
+ F R VV + D D+D +L LDAGAE+V ED E +++ S
Sbjct: 133 YNFTRKGVVEVAKADGVDEDSILMAVLDAGAEEV-----------EDMGES-FEIYSEPG 180
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ + T L +AG+ +++ + + T +EVD + LI L + DDV VYT
Sbjct: 181 DIVAVRTALTDAGMDYDSAE-VQFVAGTKVEVDVDGARKVFRLIDALEDSDDVQNVYT 237
>gi|288904874|ref|YP_003430096.1| hypothetical protein GALLO_0663 [Streptococcus gallolyticus UCN34]
gi|325977815|ref|YP_004287531.1| hypothetical protein SGGBAA2069_c06150 [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
gi|386337324|ref|YP_006033493.1| hypothetical protein SGGB_0645 [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|288731600|emb|CBI13155.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34]
gi|325177743|emb|CBZ47787.1| conserved hypothetical protein [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|334279960|dbj|BAK27534.1| conserved hypothetical protein [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
Length = 241
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 132/244 (54%), Gaps = 16/244 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
SKI +KG DAK+ +++++ +E+ A K GG +P+ N L VL+KA+ ++PKD +
Sbjct: 8 SKIKNKKGEADAKRGAIFNKLSREIFVAAKAGGGDPSMNASLRMVLDKARAANMPKDNIN 67
Query: 141 RNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+A++ G + E YE YG GGV+I+V LTD R+ A + + GG M
Sbjct: 68 RAIKKATDVGDTTNYDEITYEGYGPGGVAILVHTLTDNKKRTDANMHTIFTRNGGNMGST 127
Query: 200 GSVMFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV + F R V++ D D+D +L++ LDAGAED+ DD +++
Sbjct: 128 GSVAYMFDRKGYIVIDRDNLDLDEDAMLEVILDAGAEDL----KTSDDA--------FEI 175
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ + + L+ + F S ++P + +DDE ++ + L+ KL + DDV
Sbjct: 176 FTEPKEFPAVKEALQAQNLEFAQAQLS-MIPQNYVSLDDEQADILETLVDKLEDDDDVQD 234
Query: 318 VYTD 321
VYT+
Sbjct: 235 VYTN 238
>gi|339634065|ref|YP_004725706.1| hypothetical protein WKK_00755 [Weissella koreensis KACC 15510]
gi|338853861|gb|AEJ23027.1| hypothetical protein WKK_00755 [Weissella koreensis KACC 15510]
Length = 241
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 133/242 (54%), Gaps = 17/242 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +++ +A K GG +P N L V+EKAK ++PKD V+R
Sbjct: 10 IQGRKNAQDAKRGKIFQKLSRDLYTAAKSGGVDPDGNPGLRLVMEKAKAANMPKDNVQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ +AS G + E YE YG G++++VE LTD R+ + VR K GG++ GSV
Sbjct: 70 LDKASGAGGANYQELTYEGYGPAGIAVLVETLTDNTNRTASNVRSAFKHAGGELGTSGSV 129
Query: 203 MFKFRRARVVNI-KFTDA---DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
F+F R + I + DA D+DQL + L+AGA+D+ T +D+ +++
Sbjct: 130 AFQFERKGYIEIARGEDAPEIDEDQLFEDMLEAGADDM--------KTYDDQ----FEIY 177
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+ + ++ L G D + ++ +EV ++ E +L+ +L DDV AV
Sbjct: 178 TDPKVFPEVRDALEAKGYTLINDEVT-MIADNPMEVPEDNAESLAKLVEELEADDDVSAV 236
Query: 319 YT 320
+T
Sbjct: 237 FT 238
>gi|319954419|ref|YP_004165686.1| hypothetical protein [Cellulophaga algicola DSM 14237]
gi|319423079|gb|ADV50188.1| UPF0082 protein yeeN [Cellulophaga algicola DSM 14237]
Length = 236
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 128/244 (52%), Gaps = 13/244 (5%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR RK + + +K ++R+GK+++ AVK GGP+P +N+ L AV++ AK +++P
Sbjct: 1 MGRAFEFRKARKMKRWSAMSKAFTRIGKDIVMAVKDGGPDPDTNSRLRAVIQNAKAINMP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
KD VER IKRAS+K F E ++E Y G++I+VE TD TR+VA VR C G
Sbjct: 61 KDNVERAIKRASDKSLGDFKEVLFEGYAPHGIAILVETATDNNTRTVANVRSYFNKCNGS 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
M GSV F F I D ++L +D GAE+V DED Y
Sbjct: 121 MGTSGSVEFMFDHTCNFRIPAEGIDPEELELEMIDFGAEEVF--------ADEDGILIYA 172
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
S ++ T RE I +G E +P T E+++E ++L+ KL E DDV
Sbjct: 173 PFESFGAIQKELET--RELEI---LSSGFERIPQVTKEINEEEAADVEKLLEKLEEDDDV 227
Query: 316 DAVY 319
VY
Sbjct: 228 QNVY 231
>gi|225620450|ref|YP_002721707.1| hypothetical protein BHWA1_01533 [Brachyspira hyodysenteriae WA1]
gi|384207809|ref|YP_005593529.1| hypothetical protein Bint_0315 [Brachyspira intermedia PWS/A]
gi|254800549|sp|C0R1L5.1|Y1533_BRAHW RecName: Full=Probable transcriptional regulatory protein
BHWA1_01533
gi|225215269|gb|ACN84003.1| conserved hypothetical protein [Brachyspira hyodysenteriae WA1]
gi|343385459|gb|AEM20949.1| conserved hypothetical protein [Brachyspira intermedia PWS/A]
Length = 247
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 136/245 (55%), Gaps = 15/245 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGG-PNPTSNTVLAAVLEKAKELDVPKD 137
+ + I +K A D+KK K++S++ KE+ AVK+GG P+P N L V+ KAK ++P D
Sbjct: 6 KWASIKHKKAANDSKKGKIWSKIAKEITIAVKEGGSPDPDQNARLRMVIVKAKGTNMPND 65
Query: 138 IVERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKM 196
++R IKR + G+ A IE++ YE Y GGV+I+V+V TD R+ A +R + GG +
Sbjct: 66 NIDRAIKRGAGAGEGANIEEMSYEGYAPGGVAIIVDVATDNKNRTAAEIRSIFSKNGGNL 125
Query: 197 ADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
A+ G+V ++F++ VV I ++ L+DI LDAGAED+ ++ E +
Sbjct: 126 AENGAVSWQFKKKAVVMIPAAGNTEESLMDIVLDAGAEDI------------EQDEEVFT 173
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
+ + + I L+ GI E+ + T +++A ++ K +I + DDV
Sbjct: 174 ITGPMETLSSIVDALKAKGIEPESAEIVRVADNTMTIAENDAKKVMK-IIGLFEDHDDVS 232
Query: 317 AVYTD 321
AV T+
Sbjct: 233 AVATN 237
>gi|374337613|ref|YP_005094318.1| hypothetical protein SMA_0624 [Streptococcus macedonicus ACA-DC
198]
gi|372283718|emb|CCF01915.1| Hypothetical protein SMA_0624 [Streptococcus macedonicus ACA-DC
198]
Length = 241
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 133/244 (54%), Gaps = 16/244 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
SKI +KG DAK+ +++++ +E+ A K GG +P+ N L VL+KA+ ++PKD +
Sbjct: 8 SKIKNKKGEADAKRGAIFNKLSREIFVAAKAGGGDPSMNASLRMVLDKARAANMPKDNIN 67
Query: 141 RNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+A++ G + E YE YG GGV+I+V LTD R+ A + + GG M
Sbjct: 68 RAIKKATDVGDTTNYDEITYEGYGPGGVAILVHTLTDNKKRTDANMHTIFTRNGGNMGST 127
Query: 200 GSV--MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV MF + V++ D D+D +L++ LDAGAED+ ++ +++
Sbjct: 128 GSVAYMFDHKGYIVIDRDNLDLDEDAMLEVLLDAGAEDL------------KTSDDAFEI 175
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ + + L+ + F S ++P + +DDE +++ + L+ KL + DDV
Sbjct: 176 FTEPKEFPAVKEALKAQNLEFAQAQLS-MIPQNYVSLDDEQVDILETLVDKLEDDDDVQD 234
Query: 318 VYTD 321
VYT+
Sbjct: 235 VYTN 238
>gi|258405868|ref|YP_003198610.1| hypothetical protein Dret_1748 [Desulfohalobium retbaense DSM 5692]
gi|257798095|gb|ACV69032.1| protein of unknown function DUF28 [Desulfohalobium retbaense DSM
5692]
Length = 249
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 137/244 (56%), Gaps = 14/244 (5%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RKGAQDAK+ K+++R+ KE++ A K GG + N+ L A +E AK +++PKD
Sbjct: 6 KWANIKRRKGAQDAKRGKIFTRVTKEIMLAAKLGGGDLDGNSRLRAAVESAKSVNLPKDK 65
Query: 139 VERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+E IK+ + E G E+ E +YE Y GGV++++E TD R+VA +R ++ GG +
Sbjct: 66 IETAIKKGTGEIGAESIEEIMYEGYAPGGVAMLIEAATDNKNRTVAEIRHILSKGGGSLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
+ G V + F R ++ D++QLL++ L+AGA+DV +DD D ++V
Sbjct: 126 ESGCVAWMFDRRGILRFPKESYDEEQLLEVGLEAGADDV------KDDGD------TWEV 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ + +++ AG+ + T+ ++P T+ VD E ++ L + DDV
Sbjct: 174 RTEPEALSEVQEAYTSAGLEY-TEADVTMVPQNTVPVDKETGAKVLKVYEALDDHDDVQR 232
Query: 318 VYTD 321
VY +
Sbjct: 233 VYAN 236
>gi|171778636|ref|ZP_02919732.1| hypothetical protein STRINF_00584 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282593|gb|EDT48017.1| DNA-binding regulatory protein, YebC/PmpR family [Streptococcus
infantarius subsp. infantarius ATCC BAA-102]
Length = 256
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 136/252 (53%), Gaps = 18/252 (7%)
Query: 75 CMG--RRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKEL 132
CM + SKI +KG DAK+ +++++ +E+ A K GG +P+ N L VL+KA+
Sbjct: 15 CMSGHNKWSKIKNKKGEADAKRGAIFNKLSREIFVAAKAGGGDPSMNASLRMVLDKARAA 74
Query: 133 DVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKD 191
++PKD + R IK+A++ G + E YE YG GGV+I+V LTD R+ A + +
Sbjct: 75 NMPKDNINRAIKKATDVGDTTNYDEITYEGYGPGGVAILVHTLTDNKKRTDANMHTIFTR 134
Query: 192 CGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDED 249
GG M GSV + F R V++ + D D+D +L++ LDA AED+ DD
Sbjct: 135 NGGNMGSTGSVAYMFERKGYIVIDRENLDLDEDSILELILDAEAEDL----KTSDDA--- 187
Query: 250 RAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKL 309
+++++ S + + L+ I F S ++P I +D E ++ + L+ KL
Sbjct: 188 -----FEILTESKEFPAVKEALQAQNIEFAQAQLS-MIPQNYISLDAEQADILETLVDKL 241
Query: 310 LELDDVDAVYTD 321
+ DDV VYT+
Sbjct: 242 EDDDDVQDVYTN 253
>gi|399926282|ref|ZP_10783640.1| hypothetical protein MinjM_04575 [Myroides injenensis M09-0166]
Length = 238
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 135/247 (54%), Gaps = 14/247 (5%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR GRK + + AK ++R+GK+++ AVK+GGPNP SN+ L AV++ AK ++P
Sbjct: 1 MGRAFEFRKGRKLKRWSAMAKTFTRIGKDIVMAVKEGGPNPESNSRLRAVIQNAKAANMP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
KD VER IKRA++K E + E ++E YG G++ ++E TD R+VA +R C G
Sbjct: 61 KDNVERAIKRATDKDTENYKEVIFEGYGPHGIAFLIECATDNNNRTVANIRSYFNKCNGT 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKD-QLLDIAL-DAGAEDVIEPPVNEDDTDEDRAER 253
+ GSV F F I F D ++D + ++ L D G +++ E DED
Sbjct: 121 LGTSGSVEFMFDHTCNFRIPF-DPNRDLEEFELELIDFGIDEIFE--------DEDG--E 169
Query: 254 YYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELD 313
+ + +++ I +L GI +G + +P T E+ +E +L+ K+ E D
Sbjct: 170 GVMIYAPFESFGAIQKELESRGIEI-LSSGFDRIPQVTKELSEEEQADVDKLLEKIEEDD 228
Query: 314 DVDAVYT 320
DV +V+T
Sbjct: 229 DVQSVFT 235
>gi|398305394|ref|ZP_10508980.1| hypothetical protein BvalD_08028 [Bacillus vallismortis DV1-F-3]
Length = 239
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 129/244 (52%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K ++DA +++Y++ G+E+ A K+G P+P SN L VLE+AK VP
Sbjct: 1 MGRKWNNIKEKKASKDANTSRIYAKFGREIYVAAKQGEPDPESNQALKVVLERAKTYSVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K+I+ER I++A +E+F E YE +G G I+V+ LT+ + R+ VR GG
Sbjct: 61 KNIIERAIEKAKGGAEESFDELRYEGFGPNGSMIIVDALTNNVNRTAPEVRAAFGKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
M GSV + F V+ + AD+ + + D D++E EDD+
Sbjct: 121 MGVSGSVAYMFDATAVIGVDGKSADEALEILMEADVDVRDILE----EDDS--------A 168
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
V + D + + + AG+ T +L + +E+ D+A E ++LI L +L+DV
Sbjct: 169 IVYAEPDQFHAVQEAFKNAGVEEFTVAELTMLAQSEVELPDDAKEQFEKLIDALEDLEDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QQVY 232
>gi|212697076|ref|ZP_03305204.1| hypothetical protein ANHYDRO_01641 [Anaerococcus hydrogenalis DSM
7454]
gi|212675851|gb|EEB35458.1| hypothetical protein ANHYDRO_01641 [Anaerococcus hydrogenalis DSM
7454]
Length = 245
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/255 (33%), Positives = 138/255 (54%), Gaps = 36/255 (14%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ SKI +KG++DA++ K+++++G+ + AV++GG NP N L A ++KAK ++P D
Sbjct: 6 KWSKIKNKKGSEDARRGKIFTKLGRNISVAVREGGDNPEYNPALKAAIDKAKAENMPNDN 65
Query: 139 VERNIKRASEKGQEAFIEK-VYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ER IK+AS A E+ +YE Y GV+++V+ LTD R+ +R + GG +
Sbjct: 66 IERAIKKASGDMDGANFERIIYEGYAKDGVAVIVDCLTDNKNRTAPDIRHIFDKNGGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSVMF F R ++ I+ D D L+ +D GAEDV +E DT Y++
Sbjct: 126 TDGSVMFMFNRKGLIEIEKAGIDFDDLMLEVIDLGAEDV----TDEGDT--------YQI 173
Query: 258 VSTSDNYTDITT-------KLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLL 310
+++ +++ I KL +A I + DN L+ +A E N + I KL+
Sbjct: 174 ITSVEDFQSIVDGIKKSDYKLTKADISYIADN---LI---------DAQESNNKQIMKLI 221
Query: 311 EL----DDVDAVYTD 321
+ DDV VYT+
Sbjct: 222 DALEDNDDVQEVYTN 236
>gi|307718819|ref|YP_003874351.1| hypothetical protein STHERM_c11330 [Spirochaeta thermophila DSM
6192]
gi|306532544|gb|ADN02078.1| hypothetical protein STHERM_c11330 [Spirochaeta thermophila DSM
6192]
Length = 246
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 136/240 (56%), Gaps = 14/240 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I +K A DAK+ K+++++ KE+ A + GG +P +N L + KAK ++PK+ +ER
Sbjct: 10 IRHKKAAMDAKRGKVFTKLIKEISVAARTGGGDPEANPRLRTAILKAKAANMPKENIERA 69
Query: 143 IKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+ + + + A + E VYE YG GGV+I++E LTD R+ + VR ++ GG + + G
Sbjct: 70 IKKGTGELEGADYTEIVYEAYGPGGVAIIIEALTDNKNRTASEVRHILSKHGGSLGETGC 129
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
V + F++ ++ T +D++++ AL+AGAEDV +D + E V++
Sbjct: 130 VSYLFKKRGLITFDATKYTEDEIIEAALEAGAEDV--------SSDGEVIE----VLTDP 177
Query: 262 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
++ ++ L E G +ET S L+P I VD E E +LI L + DDV +V T+
Sbjct: 178 SSFEEVQQGLTEKGFEYETAEIS-LIPDARITVDKETAEKVLKLIEALEDNDDVQSVSTN 236
>gi|227510215|ref|ZP_03940264.1| protein of hypothetical function DUF28 [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
gi|227189867|gb|EEI69934.1| protein of hypothetical function DUF28 [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
Length = 244
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 125/239 (52%), Gaps = 15/239 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +++ A K G P+P +N L V+EKA+ ++PKD V+R
Sbjct: 10 IQGRKNAQDAKRGKIFQKISRDLYQAAKAGDPDPENNPQLRLVMEKARAANMPKDNVQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
I +AS G F E YE YG GG +I+V LTD R+ AA+R GG + GSV
Sbjct: 70 IDKASGLGGAKFEEITYEGYGPGGTAIMVSALTDNKNRTAAAIRSAFTHHGGSLGASGSV 129
Query: 203 MFKFRRARVVNIKFTDADK--DQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R + + DK D +L ALDAGA+D+ TD + +++ +
Sbjct: 130 SYMFDRKGYIEVLRDGLDKSEDDMLMDALDAGADDMKT-------TDSE-----FQIFTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ + +L++ G +T + P TT EV + + LI +L DDV VY
Sbjct: 178 PSSLAAVRDELQKKGYDLDTAE-VRMFPETTTEVPGDKISQYSGLIDELENNDDVQDVY 235
>gi|227513143|ref|ZP_03943192.1| protein of hypothetical function DUF28 [Lactobacillus buchneri ATCC
11577]
gi|227083718|gb|EEI19030.1| protein of hypothetical function DUF28 [Lactobacillus buchneri ATCC
11577]
Length = 244
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 125/239 (52%), Gaps = 15/239 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +++ A K G P+P +N L V+EKA+ ++PKD V+R
Sbjct: 10 IQGRKNAQDAKRGKIFQKISRDLYQAAKAGDPDPENNPQLRLVMEKARAANMPKDNVQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
I +AS G F E YE YG GG +I+V LTD R+ AA+R GG + GSV
Sbjct: 70 IDKASGLGGAKFEEITYEGYGPGGTAIMVSALTDNKNRTAAAIRSAFTHHGGSLGASGSV 129
Query: 203 MFKFRRARVVNIKFTDADK--DQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R + + DK D +L ALDAGA+D+ TD + +++ +
Sbjct: 130 SYMFDRKGYIEVLRDGLDKSEDDMLMDALDAGADDMKT-------TDSE-----FQIFTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ + +L++ G +T + P TT EV + + LI +L DDV VY
Sbjct: 178 PSSLAAVRDELQKKGYDLDTAE-VRMFPETTTEVPGDKISQYSGLIDELENNDDVQDVY 235
>gi|417770411|ref|ZP_12418319.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Pomona str. Pomona]
gi|418682672|ref|ZP_13243886.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Pomona str. Kennewicki LC82-25]
gi|418706519|ref|ZP_13267366.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Hebdomadis str. R499]
gi|418712581|ref|ZP_13273318.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans str. UI 08452]
gi|421115021|ref|ZP_15575435.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Canicola str. Fiocruz LV133]
gi|400325594|gb|EJO77869.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Pomona str. Kennewicki LC82-25]
gi|409947552|gb|EKN97548.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Pomona str. Pomona]
gi|410013742|gb|EKO71819.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Canicola str. Fiocruz LV133]
gi|410763848|gb|EKR34568.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Hebdomadis str. R499]
gi|410790951|gb|EKR84635.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans str. UI 08452]
gi|455665733|gb|EMF31235.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Pomona str. Fox 32256]
Length = 249
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 136/238 (57%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A D+K+ +++R+GKE+ A K GG +P N L + KAK +++PKD +ER I++
Sbjct: 13 KKDAIDSKRGAIFTRVGKEITVAAKMGGGDPEGNPRLRLAILKAKSVNMPKDNIERAIRK 72
Query: 146 AS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMF 204
+ E + E +YE +G GG++I+V +TDK +R+ ++ ++ GG +A GSV
Sbjct: 73 GTGELEGVTYEECLYECFGPGGIAIMVSAVTDKKSRTTPEIKSILTKLGGSLATSGSVSR 132
Query: 205 KFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNY 264
F + V+ ++ + +D+L+D+A+ GAEDVI NE D Y+V+S DNY
Sbjct: 133 LFEKKGVIVLESSQISEDELVDVAVGGGAEDVI----NEGDV--------YRVISVPDNY 180
Query: 265 TDITTKLREAGIPFETDNGSELLPITTIEV-DDEAMELNKELIAKLLELDDVDAVYTD 321
+ L E G+ E ++ +P+ + E+ D E E +LI +L DDV +V ++
Sbjct: 181 ETVLHTLNEKGLKSE-ESEIRYIPLVSSEIADKEVAEKIMKLIDQLDGHDDVTSVTSN 237
>gi|387889101|ref|YP_006319399.1| hypothetical protein EBL_c17940 [Escherichia blattae DSM 4481]
gi|414595171|ref|ZP_11444800.1| putative transcriptional regulatory protein YebC [Escherichia
blattae NBRC 105725]
gi|386923934|gb|AFJ46888.1| hypothetical protein EBL_c17940 [Escherichia blattae DSM 4481]
gi|403193846|dbj|GAB82452.1| putative transcriptional regulatory protein YebC [Escherichia
blattae NBRC 105725]
Length = 238
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 133/244 (54%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ +A K+G P+P SN+ L V+E+AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGATSKIYAKFGVEIYAAAKQGEPDPESNSTLKFVIERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A G E F++ YE +G G I+ E LT + R++A VR + GG
Sbjct: 61 KHVIDKAIDKAKGGGDETFVQGRYEGFGPSGSMIIAETLTSNVNRTIANVRTIFNKKGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ G+V + F V+ K TD D+ + +I LDA DV D T+ED Y
Sbjct: 121 IGAAGAVSYMFDNTGVIVFKGTDPDR--IFEILLDAEV-DV------RDVTEEDGNIIIY 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
++D + I L+ AGI T EL+ + +E+ E +E+ + L+ L + DDV
Sbjct: 172 --TESTDLHKGIDA-LKAAGITEFTTTELELIAQSEVELSPEDLEIFEGLVDALEDDDDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QRVY 232
>gi|451949073|ref|YP_007469668.1| DNA-binding regulatory protein, YebC/PmpR family [Desulfocapsa
sulfexigens DSM 10523]
gi|451908421|gb|AGF80015.1| DNA-binding regulatory protein, YebC/PmpR family [Desulfocapsa
sulfexigens DSM 10523]
Length = 249
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 128/218 (58%), Gaps = 14/218 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +KGA DAK+ K+++R+ KE+ A + GG +P N L + + A+ ++PKD +
Sbjct: 8 ANIKHKKGAADAKRGKIFTRLIKEITVAARMGGGDPDGNPRLRSAIVTARAENMPKDNIT 67
Query: 141 RNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+ + E E + E +YE YG GGV+++VE +TD R+VA +R GG + +
Sbjct: 68 RAIKKGTGELEGEVYDEILYEGYGPGGVAVLVECMTDNRNRTVADIRHYFAKSGGNLGES 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
G V + F + ++ + T ++ L+++A++AGA+DV+E EDD Y+++V+
Sbjct: 128 GCVAYMFDKKGMMLVDKTTISEEALMELAIEAGADDVVE----EDD--------YFQIVT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDE 297
+++ + +L E G+ F + ++P TTIEV +E
Sbjct: 176 APEDFDAVRDELEEGGVSF-AEASLTMVPQTTIEVTEE 212
>gi|24213420|ref|NP_710901.1| hypothetical protein LA_0720 [Leptospira interrogans serovar Lai
str. 56601]
gi|45658716|ref|YP_002802.1| hypothetical protein LIC12886 [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|386073060|ref|YP_005987377.1| hypothetical protein LIF_A0586 [Leptospira interrogans serovar Lai
str. IPAV]
gi|417760114|ref|ZP_12408142.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans str. 2002000624]
gi|417764294|ref|ZP_12412264.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Bulgarica str. Mallika]
gi|417775724|ref|ZP_12423575.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans str. 2002000621]
gi|417786754|ref|ZP_12434442.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans str. C10069]
gi|418669662|ref|ZP_13231041.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Pyrogenes str. 2006006960]
gi|418673802|ref|ZP_13235113.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans str. 2002000623]
gi|418688663|ref|ZP_13249807.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans str. FPW2026]
gi|418702019|ref|ZP_13262937.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Bataviae str. L1111]
gi|418711254|ref|ZP_13272019.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Grippotyphosa str. UI 08368]
gi|418722454|ref|ZP_13281620.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans str. UI 12621]
gi|418729656|ref|ZP_13288203.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans str. UI 12758]
gi|421083760|ref|ZP_15544631.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
santarosai str. HAI1594]
gi|421101977|ref|ZP_15562587.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Icterohaemorrhagiae str. Verdun LP]
gi|421121047|ref|ZP_15581348.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans str. Brem 329]
gi|421125676|ref|ZP_15585921.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Grippotyphosa str. 2006006986]
gi|421135272|ref|ZP_15595396.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Grippotyphosa str. Andaman]
gi|33517031|sp|Q8F839.1|Y720_LEPIN RecName: Full=Probable transcriptional regulatory protein LA_0720
gi|49037276|sp|P62038.1|Y2886_LEPIC RecName: Full=Probable transcriptional regulatory protein LIC_12886
gi|24194184|gb|AAN47919.1|AE011259_10 conserved hypothetical protein [Leptospira interrogans serovar Lai
str. 56601]
gi|45601960|gb|AAS71439.1| conserved hypothetical protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|353456849|gb|AER01394.1| conserved hypothetical protein [Leptospira interrogans serovar Lai
str. IPAV]
gi|400353530|gb|EJP05699.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Bulgarica str. Mallika]
gi|400362163|gb|EJP18107.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans str. FPW2026]
gi|409944073|gb|EKN89662.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans str. 2002000624]
gi|409950029|gb|EKO04560.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans str. C10069]
gi|409963822|gb|EKO27544.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans str. UI 12621]
gi|410020530|gb|EKO87331.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Grippotyphosa str. Andaman]
gi|410346036|gb|EKO97068.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans str. Brem 329]
gi|410368122|gb|EKP23500.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Icterohaemorrhagiae str. Verdun LP]
gi|410433677|gb|EKP78017.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
santarosai str. HAI1594]
gi|410436782|gb|EKP85893.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Grippotyphosa str. 2006006986]
gi|410574598|gb|EKQ37629.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans str. 2002000621]
gi|410579080|gb|EKQ46930.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans str. 2002000623]
gi|410754593|gb|EKR16243.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Pyrogenes str. 2006006960]
gi|410759151|gb|EKR25370.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Bataviae str. L1111]
gi|410768407|gb|EKR43655.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Grippotyphosa str. UI 08368]
gi|410775834|gb|EKR55825.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans str. UI 12758]
gi|455791809|gb|EMF43603.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Lora str. TE 1992]
gi|456824629|gb|EMF73055.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Canicola str. LT1962]
gi|456969473|gb|EMG10477.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Grippotyphosa str. LT2186]
gi|456988000|gb|EMG23179.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Copenhageni str. LT2050]
Length = 249
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 137/240 (57%), Gaps = 19/240 (7%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A D+K+ +++R+GKE+ A K GG +P N L + KAK +++PKD +ER I++
Sbjct: 13 KKDAIDSKRGAIFTRVGKEITVAAKMGGGDPEGNPRLRLAILKAKSVNMPKDNIERAIRK 72
Query: 146 AS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMF 204
+ E + E +YE +G GG++I+V +TDK +R+ ++ ++ GG +A GSV
Sbjct: 73 GTGELEGVTYEECLYECFGPGGIAIMVSAVTDKKSRTTPEIKSILTKLGGSLATSGSVSR 132
Query: 205 KFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNY 264
F + V+ ++ + +D+L+D+A+ GAEDVI NE D Y+V+S DNY
Sbjct: 133 LFEKKGVIVLESSQISEDELVDVAVGGGAEDVI----NEGDV--------YRVISVPDNY 180
Query: 265 TDITTKLREAGIPFETDNGSEL--LPITTIEV-DDEAMELNKELIAKLLELDDVDAVYTD 321
+ L E G+ E SE+ +P+ + E+ D E E +LI +L DDV +V ++
Sbjct: 181 ETVLHALNEKGLKSEE---SEIRYIPLVSSEIADKEVAEKIMKLIDQLDGHDDVTSVTSN 237
>gi|403714156|ref|ZP_10940119.1| putative transcriptional regulator [Kineosphaera limosa NBRC
100340]
gi|403211826|dbj|GAB94802.1| putative transcriptional regulator [Kineosphaera limosa NBRC
100340]
Length = 275
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 135/242 (55%), Gaps = 19/242 (7%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++++ K + A + GG +PT N L ++KAK+ VP D ++R +KR
Sbjct: 33 KKAALDAKRGKLFAKLIKNIEVAARTGGGDPTGNPTLYDAIQKAKKSSVPNDNIDRAVKR 92
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S E G + +YE Y GGV++++E LTD R+ A VR + GG +ADPGSV
Sbjct: 93 GSGAEGGGADWQTIMYEGYAPGGVAVLIECLTDNRNRAAAEVRTALTRNGGNLADPGSVS 152
Query: 204 FKFRRARVVNIKFTDAD----KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
+ F R VV + +D +D LL++ L+AGAE+V +D E +++VS
Sbjct: 153 YVFDRKGVVVVPKEQSDGALTEDGLLEVVLEAGAEEV-------NDLGES-----FEIVS 200
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ ++ I +++AG+ +E+ +E +P +E+D E ++ L + DDV V+
Sbjct: 201 EASDFVAIRQAVQQAGLDYESAE-AEFVPNLQVELDVEGARKMMRVVDALEDSDDVQNVF 259
Query: 320 TD 321
+
Sbjct: 260 VN 261
>gi|379735751|ref|YP_005329257.1| hypothetical protein BLASA_2322 [Blastococcus saxobsidens DD2]
gi|378783558|emb|CCG03226.1| conserved protein of unknown function; YebC-like [Blastococcus
saxobsidens DD2]
Length = 252
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/239 (36%), Positives = 128/239 (53%), Gaps = 17/239 (7%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K DAK+ KL++++ K + A + GG +P N L ++KAK+ VP D ++R +KR
Sbjct: 13 KKAGIDAKRGKLFAKLIKNIEVAARTGGGDPAGNPTLFDAIQKAKKSSVPNDNIDRAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
+ E G + YE Y GGV+++VE LTD RS VR + GG MADPGSV
Sbjct: 73 GAGLEAGGVDYQGITYEGYAAGGVAVLVECLTDNKNRSAMEVRTAMTRNGGSMADPGSVS 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R VV + +D +L LDAGAE+V + DT ++VVS +
Sbjct: 133 YLFSRKGVVVVPAAGHTEDDVLMAVLDAGAEEVRDLG----DT--------FEVVSEPGD 180
Query: 264 YTDITTKLREAGIPFET-DNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ T L+EAGI +++ D G LP +E+D + +LI L +LDDV VY +
Sbjct: 181 MVAVRTALQEAGIEYDSADMG--FLPSVQVELDADGAAKVFKLIDALEDLDDVQNVYAN 237
>gi|344942859|ref|ZP_08782146.1| UPF0082 protein yeeN [Methylobacter tundripaludum SV96]
gi|344260146|gb|EGW20418.1| UPF0082 protein yeeN [Methylobacter tundripaludum SV96]
Length = 248
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/243 (35%), Positives = 135/243 (55%), Gaps = 16/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK QDAK+ K++++M +E+ AVK GP+ SN L ++KA ++ +D ++
Sbjct: 8 ANIKHRKAGQDAKRGKIFTKMLREITVAVKTSGPDAASNPALRTAVDKALGANMRRDTID 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
IK+AS + E V YE YG GG +++V+ LTD R+V VR GG +
Sbjct: 68 TAIKKASGALEGVNYEVVRYEGYGPGGTAVMVDCLTDNRNRTVGEVRHAFSKAGGNLGTD 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F + +++ + D+D L++ AL+AGAEDVI VN+D + V++
Sbjct: 128 GSVAYLFSKIGILSYAPS-VDEDALMEAALEAGAEDVI---VNDDGS--------VDVMT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTI-EVDDEAMELNKELIAKLLELDDVDAV 318
T ++Y ++ L AG FE DN + T+ E+D E E LI +L +LDDV V
Sbjct: 176 TPESYLEVKDALVAAG--FEPDNAEVTMQAATMTELDAEGAEKMMRLIDRLEDLDDVQNV 233
Query: 319 YTD 321
Y++
Sbjct: 234 YSN 236
>gi|297571391|ref|YP_003697165.1| hypothetical protein Arch_0820 [Arcanobacterium haemolyticum DSM
20595]
gi|296931738|gb|ADH92546.1| protein of unknown function DUF28 [Arcanobacterium haemolyticum DSM
20595]
Length = 254
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 137/246 (55%), Gaps = 29/246 (11%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++R+ K + A + GG +P N L ++KAK+ VP D ++R +KR
Sbjct: 13 KKAAIDAKRGKLFARLIKNIEVAARTGGGDPAGNPTLYDAIQKAKKNSVPADNIDRAVKR 72
Query: 146 ASEKGQEA--FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S +G E + +YE YG GV+I++E LTD R+ + VR + GG +ADPGSV
Sbjct: 73 GSGEGAEQVNYENIMYEGYGANGVAILIECLTDNRNRAASDVRVALTRNGGTLADPGSVS 132
Query: 204 FKFRRARVVNIKFT-DADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
+ F R +V + T D +D +L LDAGAE+V NE D ++V+S +
Sbjct: 133 YMFSRKGIVEVPNTGDFSEDDILMAVLDAGAEEV----TNEGDV--------FEVLSEPN 180
Query: 263 NYTDITTKLREAGIPFETDNGSEL-------LPITTIEVDDEAMELNKELIAKLLELDDV 315
+ ++ L+ GI + N +E+ +PIT +E ++ M +LI L ++DD+
Sbjct: 181 DVVEVRKALQAEGIDY---NSAEVQFVPSMKVPITDVETANKLM----KLIDALDDVDDI 233
Query: 316 DAVYTD 321
AVY++
Sbjct: 234 QAVYSN 239
>gi|325847799|ref|ZP_08170021.1| DNA-binding regulatory protein, YebC/PmpR family [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
gi|325480817|gb|EGC83870.1| DNA-binding regulatory protein, YebC/PmpR family [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
Length = 245
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 139/255 (54%), Gaps = 36/255 (14%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ SKI +KG++DA++ K+++++G+ + AV++GG NP N L A ++KAK ++P D
Sbjct: 6 KWSKIKNKKGSEDARRGKIFTKLGRNISVAVREGGDNPEYNPALKAAIDKAKAENMPNDN 65
Query: 139 VERNIKRASEKGQEAFIEK-VYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ER IK+AS A E+ +YE Y GV+++V+ LTD R+ +R + GG +
Sbjct: 66 IERAIKKASGDMDGANFERIIYEGYAKDGVAVIVDCLTDNKNRTAPDIRHIFDKNGGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSVMF F R ++ I+ D D+L+ +D GAEDV +E DT Y++
Sbjct: 126 TDGSVMFMFNRKGLIEIEKDGIDFDELMLEVIDLGAEDV----TDEGDT--------YQI 173
Query: 258 VSTSDNYTDITT-------KLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLL 310
+++ +++ + KL +A I + DN L+ +A E N + I KL+
Sbjct: 174 ITSVEDFQSVVDGIKKSDYKLTKADISYIADN---LI---------DAQESNNKQIMKLI 221
Query: 311 EL----DDVDAVYTD 321
+ DDV VYT+
Sbjct: 222 DALEDNDDVQEVYTN 236
>gi|256545408|ref|ZP_05472770.1| glucose-1-phosphate adenylyltransferase [Anaerococcus vaginalis
ATCC 51170]
gi|256398804|gb|EEU12419.1| glucose-1-phosphate adenylyltransferase [Anaerococcus vaginalis
ATCC 51170]
Length = 245
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 139/255 (54%), Gaps = 36/255 (14%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ SKI +KG++DA++ K+++++G+ + AV++GG NP N L A ++KAK ++P D
Sbjct: 6 KWSKIKNKKGSEDARRGKIFTKLGRNISVAVREGGDNPEYNPALKAAIDKAKAENMPNDN 65
Query: 139 VERNIKRASEKGQEAFIEK-VYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ER IK+AS A E+ +YE Y GV+++V+ LTD R+ +R + GG +
Sbjct: 66 IERAIKKASGDTSGANFERIIYEGYAKDGVAVIVDCLTDNKNRTAPDIRHIFDKNGGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSVMF F R ++ I+ + D D+L+ +D GAEDV TDE Y++
Sbjct: 126 TDGSVMFMFNRKGLIEIEKDEIDFDELMLEVIDFGAEDV---------TDEGDV---YQI 173
Query: 258 VSTSDNYTDI-------TTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLL 310
+++ +++ + KL +A I + DN L+ +A E N + I KL+
Sbjct: 174 ITSVEDFQTVLDGIKKENYKLAKADISYIADN---LI---------DAQESNNKQIMKLI 221
Query: 311 EL----DDVDAVYTD 321
+ DDV VYT+
Sbjct: 222 DALEDNDDVQEVYTN 236
>gi|227524358|ref|ZP_03954407.1| protein of hypothetical function DUF28 [Lactobacillus hilgardii
ATCC 8290]
gi|227088589|gb|EEI23901.1| protein of hypothetical function DUF28 [Lactobacillus hilgardii
ATCC 8290]
Length = 244
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 125/239 (52%), Gaps = 15/239 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +++ A K G P+P +N L V+EKA+ ++PKD V+R
Sbjct: 10 IQGRKNAQDAKRGKIFQKISRDLYQAAKAGDPDPENNPQLRLVMEKARAANMPKDNVQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
I +AS G F E YE YG GG +I+V LTD R+ AA+R GG + GSV
Sbjct: 70 IDKASGLGGAKFEEITYEGYGPGGTAIMVSALTDNKNRTAAAIRSAFTHHGGSLGASGSV 129
Query: 203 MFKFRRARVVNIKFTDADK--DQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R + + DK D +L ALDAGA+D+ TD + +++ +
Sbjct: 130 SYMFDRKGYIEVLRDGLDKSEDDMLMDALDAGADDMKT-------TDSE-----FQIFTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ + +L++ G +T + P TT EV + + LI +L DDV VY
Sbjct: 178 PSSLAAVRDELQKRGYDLDTAE-VRMFPETTTEVPGDKISQYSGLIDELENNDDVQDVY 235
>gi|398831212|ref|ZP_10589391.1| DNA-binding regulatory protein, YebC/PmpR family [Phyllobacterium
sp. YR531]
gi|398212780|gb|EJM99382.1| DNA-binding regulatory protein, YebC/PmpR family [Phyllobacterium
sp. YR531]
Length = 249
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 129/239 (53%), Gaps = 13/239 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++S++G+E+ A K+G P+P N L ++ A+ +PKD +ER
Sbjct: 10 IMHRKGRQDAVRSKIFSKLGREITVAAKQGLPDPLMNPRLRLAVQNARAQSMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A+ E + E YE YG GGV+++VE LTD R+ + VR GG + + GSV
Sbjct: 70 IKKAAGGDAENYEEVRYEGYGPGGVAVIVEALTDNRNRTASNVRAAFTKAGGALGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R + K + D++++ A++AGAEDV +DE+ + ++ +
Sbjct: 130 GFMFNRVGEITYKTEVGNADKVMEAAIEAGAEDVA--------SDEEG----HVIICAFE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ D++ L EA + P TT VD+E + LIA L + DDV VY +
Sbjct: 178 DIGDVSKAL-EAALGEAESIKPIWKPATTAPVDEEKAQSVLRLIATLDDDDDVQNVYAN 235
>gi|262066092|ref|ZP_06025704.1| glucose-1-phosphate adenylyltransferase [Fusobacterium
periodonticum ATCC 33693]
gi|291380187|gb|EFE87705.1| glucose-1-phosphate adenylyltransferase [Fusobacterium
periodonticum ATCC 33693]
Length = 249
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 133/245 (54%), Gaps = 19/245 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKGAQD K+AKL+++ G+E+ A K+GG +P N L +EKAK ++PKDI+E
Sbjct: 8 NNIQHRKGAQDKKRAKLFTKFGRELTIAAKEGGSDPNFNPRLRLAIEKAKAGNMPKDILE 67
Query: 141 RNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+ S + + F E YE YG G + +VE +TD R+ + +R G +
Sbjct: 68 RAIKKGSGELEGVDFTEMRYEGYGPAGTAFIVEAVTDNKNRTASEMRMTFSRKDGNLGAD 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
G+V + F++ ++ +K D D+ + AL+AGAEDV E + ++V +
Sbjct: 128 GAVSWMFKKKGIITVKSEGIDTDEFMMAALEAGAEDVEE------------TDGVFEVTT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIA---KLLELDDVD 316
+ + L+ AG +E D ++P T+E+ D +E K+++A L +LDD
Sbjct: 176 EYTEFQTVLENLKNAGYQYE-DAEITMIPENTVEITD--LETAKKVMALYDALEDLDDSQ 232
Query: 317 AVYTD 321
VY++
Sbjct: 233 NVYSN 237
>gi|421486657|ref|ZP_15934194.1| hypothetical protein QWC_28548 [Achromobacter piechaudii HLE]
gi|400195117|gb|EJO28116.1| hypothetical protein QWC_28548 [Achromobacter piechaudii HLE]
Length = 243
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 132/244 (54%), Gaps = 16/244 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RKG QDAK+ KL++++ +E+ A + GGP+P SN L +KA + ++PKD
Sbjct: 6 KWANIQHRKGRQDAKRGKLWTKIIREITVAARAGGPDPDSNPRLRMAWDKATDANMPKDN 65
Query: 139 VERNIKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
++R I+R A +A+ E YE YG GG +++V+ +TD TR+VA VR GG +
Sbjct: 66 IQRAIQRGAGGADGDAYEEVRYEGYGIGGAAVIVDCMTDNRTRTVAEVRHAFAKNGGNLG 125
Query: 198 DPGSVMFKFRR-ARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
GSV F F+ + V T DK +++ AL+AGAEDV+ TDE E +
Sbjct: 126 QEGSVAFMFKHCGQFVFAPGTPEDK--VMEAALEAGAEDVL--------TDE---EGVIE 172
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
VV +Y + +AG+ E D G + + E+ E ++L+ L LDDV
Sbjct: 173 VVCAPADYAAVRKAFDDAGLKAEVD-GIVMKALNETELAGEDAIKMQKLLDALEGLDDVQ 231
Query: 317 AVYT 320
VYT
Sbjct: 232 EVYT 235
>gi|319404759|emb|CBI78360.1| conserved hypothetical protein [Bartonella rochalimae ATCC
BAA-1498]
gi|319407722|emb|CBI81370.1| conserved hypothetical protein [Bartonella sp. 1-1C]
Length = 249
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/240 (34%), Positives = 128/240 (53%), Gaps = 14/240 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++S++ +E+ A K+G P+PT N L ++ AK +PKD +ER
Sbjct: 10 IMHRKGRQDAMRSKIFSKLAREITVAAKQGSPDPTMNPRLRLAVQNAKAQSMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+AS E + E YE YG GGV+++VE LTD R+ + VR GG + + GSV
Sbjct: 70 IKKASGSDVENYDEVRYEGYGPGGVAVIVEALTDNRNRTASNVRAAFTKSGGALGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R + KF D +++ A++AGAEDV + E + + +
Sbjct: 130 SFMFNRIGEIIYKFESGTADTIMEAAIEAGAEDV-----------QSEEEGGHHIFCAFE 178
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELN-KELIAKLLELDDVDAVYTD 321
+ ++ +K+ E + E ++ + TT+ DE L+ LIA L E DDV VY +
Sbjct: 179 DIGEV-SKILETTLG-EAESIKTIWKATTLAPIDEEKALSVLRLIATLEEDDDVQNVYAN 236
>gi|386346903|ref|YP_006045152.1| hypothetical protein [Spirochaeta thermophila DSM 6578]
gi|339411870|gb|AEJ61435.1| UPF0082 protein yeeN [Spirochaeta thermophila DSM 6578]
Length = 246
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 135/240 (56%), Gaps = 14/240 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I +K A DAK+ K+++++ KE+ A + GG +P +N L + KAK ++PK+ +ER
Sbjct: 10 IRHKKAAMDAKRGKVFTKLIKEISVAARTGGGDPEANPRLRTAILKAKAANMPKENIERA 69
Query: 143 IKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+ + + + A + E VYE YG GGV+I++E LTD R+ + VR ++ GG + + G
Sbjct: 70 IKKGTGELEGADYTEIVYEAYGPGGVAIIIEALTDNKNRTASEVRHILSKHGGSLGETGC 129
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
V + F++ ++ T +D++++ AL+AGAEDV +D + E V++
Sbjct: 130 VSYLFKKRGLITFDATKYTEDEIIEAALEAGAEDV--------SSDGEVIE----VLTDP 177
Query: 262 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
++ ++ L E G +ET S L+P I VD E E LI L + DDV +V T+
Sbjct: 178 SSFEEVQQGLTEKGFEYETAEIS-LIPDARITVDKETAEKVLRLIEALEDNDDVQSVSTN 236
>gi|194018039|ref|ZP_03056645.1| conserved hypothetical protein [Bacillus pumilus ATCC 7061]
gi|194010284|gb|EDW19860.1| conserved hypothetical protein [Bacillus pumilus ATCC 7061]
Length = 239
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 129/244 (52%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K ++DA +++Y++ G+E+ A K+G PNP SN L VLE+AK VP
Sbjct: 1 MGRKWNNIKEKKASKDASTSRIYAKFGREIYVAAKQGEPNPESNQALRFVLERAKTYSVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K IV+R I++A +E F E YE +G G ++V+ LT+ + R+ + VR GG
Sbjct: 61 KHIVDRAIEKAKGGAEENFDELRYEGFGPNGSMVIVDALTNNVNRTASDVRAAFGKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
M GSV + F + V+ ++ ++ L + D D++E ED+T
Sbjct: 121 MGVSGSVAYMFDQTAVIGVEGKSEEETLELLMEADVDVRDIME----EDET--------V 168
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
V + D + + ++AG+ T +LP + +DDE+ ++LI L EL+DV
Sbjct: 169 IVYAEPDQFHQVQEAFKQAGVEEFTVAEITMLPQNEVTLDDESKAQFEKLIDVLEELEDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QQVY 232
>gi|338972061|ref|ZP_08627440.1| hypothetical protein CSIRO_0500 [Bradyrhizobiaceae bacterium SG-6C]
gi|338234955|gb|EGP10066.1| hypothetical protein CSIRO_0500 [Bradyrhizobiaceae bacterium SG-6C]
Length = 248
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 127/246 (51%), Gaps = 27/246 (10%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++ ++ +E+ A K G P+P N L + A+ ++PKD +ER
Sbjct: 10 IMHRKGKQDAMRSKMFGKLAREITVAAKLGTPDPAMNPRLRLAITAARAENMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A E + E YE YG GGV+++VE LTD R+ + +R GG + + GSV
Sbjct: 70 IKKAIGSDGENYDEMRYEGYGPGGVAVIVEALTDNRNRAASDIRSYFTKSGGNLGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R V+ A D +L+ A+DAGA+DV +E ++V+++ +
Sbjct: 130 SFMFDRVGVIEYDAKVASDDTMLEAAIDAGADDVAS------------SEDGHEVLASPE 177
Query: 263 NYTDITTKL-------REAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
Y ++ L R+A + ++ P TI VDDE E +L+ L E DDV
Sbjct: 178 TYREVAKALEGKFGEARKAALIWK--------PQNTITVDDETGEKLFKLLDLLNEHDDV 229
Query: 316 DAVYTD 321
VY +
Sbjct: 230 QNVYAN 235
>gi|417787945|ref|ZP_12435628.1| hypothetical protein NIAS840_00826 [Lactobacillus salivarius
NIAS840]
gi|334308122|gb|EGL99108.1| hypothetical protein NIAS840_00826 [Lactobacillus salivarius
NIAS840]
Length = 242
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 130/241 (53%), Gaps = 18/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K GGP+P N L +++KA+ ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKISREIYMAAKSGGPDPDGNPQLRLIMDKARAANMPKDNIKRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
I +A+ G + E YE YG GV+I+V LTD R+ +AVR GG + + GSV
Sbjct: 70 IDKATSTGGADYEEITYEGYGPAGVAILVHALTDNRNRTASAVRADFNRNGGNLGETGSV 129
Query: 203 MFKFRRARVVNI--KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
F F R + I + D D+DQ+ + ++AG ED+ ++ +++ +
Sbjct: 130 SFMFDRKGYIAIAREDLDVDEDQMFEDVIEAGGEDL------------QTSDEVFEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ D+ +L++ ++ ++P T+ V + +E + LI +L + DDV VY
Sbjct: 178 PKAFADVRDELQKK---YDLATAELTMVPQNTVPVPTDKVEQLQRLIDRLEDEDDVSEVY 234
Query: 320 T 320
T
Sbjct: 235 T 235
>gi|270290945|ref|ZP_06197168.1| conserved hypothetical protein [Pediococcus acidilactici 7_4]
gi|304385212|ref|ZP_07367557.1| glucose-1-phosphate adenylyltransferase [Pediococcus acidilactici
DSM 20284]
gi|418069495|ref|ZP_12706772.1| hypothetical protein KIW_06365 [Pediococcus acidilactici MA18/5M]
gi|270280341|gb|EFA26176.1| conserved hypothetical protein [Pediococcus acidilactici 7_4]
gi|304328419|gb|EFL95640.1| glucose-1-phosphate adenylyltransferase [Pediococcus acidilactici
DSM 20284]
gi|357536026|gb|EHJ20057.1| hypothetical protein KIW_06365 [Pediococcus acidilactici MA18/5M]
Length = 245
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 128/240 (53%), Gaps = 17/240 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ R+ +E+ AVK GGP+P++N L +++KA+ ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQRISREIYVAVKAGGPDPSANPQLRLMMDKARAANMPKDNIKRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
I + S G + E YE YG G +I+V LTD R+ AAVR GG + GSV
Sbjct: 70 IDKGSGTGGANYEEITYEGYGPAGTAIIVSALTDNKNRTAAAVRSAFTHHGGSLGATGSV 129
Query: 203 MFKFRRARVVNIK--FTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R + IK D D+DQ+++ A++AGA+DV ++ +++ +
Sbjct: 130 SYMFDRKGYIVIKREGLDKDEDQMMEDAIEAGADDV------------QTSDEVFEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ + L G ++ N ++P T +V + ++ LI +L DDV VY
Sbjct: 178 PKEFAAVRDALEAKG--YDLANAELTMIPETETQVPADKVKQYTGLIDELENNDDVSEVY 235
>gi|254516711|ref|ZP_05128770.1| conserved hypothetical protein TIGR01033 [gamma proteobacterium
NOR5-3]
gi|219675134|gb|EED31501.1| conserved hypothetical protein TIGR01033 [gamma proteobacterium
NOR5-3]
Length = 248
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 137/242 (56%), Gaps = 14/242 (5%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAK+ K+++++ +E++ A K+GGP P N L A ++KA ++ +D ++
Sbjct: 8 ANIKHRKAAQDAKRGKMFTKLIRELVVAAKQGGPLPEDNPRLRAAVDKALGSNMTRDTID 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I R + + +E++ YE Y GGV+++VEV+TD R+VA VR GG +
Sbjct: 68 RAIARGAGNNEADDVEELTYEGYAPGGVAVLVEVMTDNRNRTVAEVRHAFSKRGGNLGTD 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F R ++ AD++Q+++ AL+AGAED+ +T +D + +V +
Sbjct: 128 GSVAYLFERKGQISFA-PGADEEQVMEAALEAGAEDI--------ETADDGS---IEVTT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
++++ + + EAG+ D ++ TT+ VD E LI L ELDDV VY
Sbjct: 176 AWEDFSGVKAAMEEAGLE-PADGEVTMVASTTVPVDASGAETVMGLIDALEELDDVQNVY 234
Query: 320 TD 321
++
Sbjct: 235 SN 236
>gi|383454476|ref|YP_005368465.1| hypothetical protein COCOR_02479 [Corallococcus coralloides DSM
2259]
gi|380728664|gb|AFE04666.1| hypothetical protein COCOR_02479 [Corallococcus coralloides DSM
2259]
Length = 249
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 132/244 (54%), Gaps = 14/244 (5%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
R SK+ R K KLYS+ KE+ A + GG +P+SN L + A+E ++P+D
Sbjct: 6 RWSKLKRRNAVLGVAKGKLYSKAIKEMTVAARLGGGDPSSNARLRVAVALARESNIPRDT 65
Query: 139 VERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ER IK+ + E E++ E YE YG GGV++++E LTD RS + VR ++ + GG M
Sbjct: 66 IERAIKKGTGELAGESYEEVTYEGYGPGGVALIIECLTDNRNRSASDVRNLLSNYGGNMG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G+V + F R V+ +K +DQ+++ ALDAGAEDV+ D+ ++V
Sbjct: 126 AEGAVGWMFHRKGVITVK-PGPTEDQVMEQALDAGAEDVV-----------DQGPDGFEV 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ + + KL AG+P + +P T++V+ + + +L+ L + DDV
Sbjct: 174 RTAPADLHAVGAKLEAAGLPLGEQKWT-FVPQNTVKVEGDNAKRLLKLMDALDDNDDVQH 232
Query: 318 VYTD 321
V+ +
Sbjct: 233 VHAN 236
>gi|336325692|ref|YP_004605658.1| hypothetical protein CRES_1138 [Corynebacterium resistens DSM
45100]
gi|336101674|gb|AEI09494.1| hypothetical protein CRES_1138 [Corynebacterium resistens DSM
45100]
Length = 250
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 130/238 (54%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ K ++++ K + A + GG +P++N L + KAK+ VP D ++R +KR
Sbjct: 13 KKAANDAKRGKEFAKLIKNIEVAARTGGGDPSANPTLQDAITKAKKSSVPNDNIDRAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S E G + +YE YG GGV++++E LTD R+ VR + GG MAD GSV
Sbjct: 73 GSGEEAGGADWETIMYEGYGAGGVAMLIECLTDNRNRAATDVRTAMSKNGGNMADAGSVS 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
++F R VV + D +D +L LDAGAE+V D E+ ++VVS +
Sbjct: 133 YQFNRKGVVILDKADHTEDDVLMAVLDAGAEEV-----------NDLGEK-FEVVSEPSD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ + L+EAGI +++ + T + VD + N +LI L + DDV ++T+
Sbjct: 181 LSAVRDALKEAGIEYDSVE-PDFRATTEVPVDAATAQKNLKLIDVLEDCDDVQNIFTN 237
>gi|145588803|ref|YP_001155400.1| hypothetical protein Pnuc_0618 [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|189040566|sp|A4SWH2.1|Y618_POLSQ RecName: Full=Probable transcriptional regulatory protein Pnuc_0618
gi|145047209|gb|ABP33836.1| protein of unknown function DUF28 [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 239
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 136/242 (56%), Gaps = 14/242 (5%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKG QD K+ K+++++ KE+ A K GG + T+N L ++KAK+ ++P D V+
Sbjct: 8 ANIQHRKGRQDEKRGKIWTKLIKEITVAAKMGGGDLTANPRLRLAIDKAKDANMPNDNVQ 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I+R + + E++ YE YG G +I+V+ LTD TR+VA VR GG M
Sbjct: 68 RAIQRGTGSLEGVNYEEIRYEGYGMNGAAIIVDCLTDNRTRTVAEVRHAFNKNGGNMGTE 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV F F+ + + +DQL+++ALDAGAEDVI T +D + +V++
Sbjct: 128 GSVAFLFKHCGQM-LFAPGTSEDQLMEVALDAGAEDVI--------THDDGS---LEVLT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+++ + + +AG+ E + + P T I ++ + E ++L+ L LDDV V+
Sbjct: 176 PVPDFSKVQDAISQAGLKAELATVA-MRPETEIALEGDQAESMQKLLDALENLDDVQEVF 234
Query: 320 TD 321
T+
Sbjct: 235 TN 236
>gi|303231617|ref|ZP_07318341.1| DNA-binding regulatory protein, YebC/PmpR family [Veillonella
atypica ACS-049-V-Sch6]
gi|302513734|gb|EFL55752.1| DNA-binding regulatory protein, YebC/PmpR family [Veillonella
atypica ACS-049-V-Sch6]
Length = 245
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/231 (36%), Positives = 130/231 (56%), Gaps = 23/231 (9%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +KG DA KAKL +++G+E+ A + GG +PT N L L+KA+E ++PKD
Sbjct: 6 KWANIKHKKGKTDALKAKLATKIGREITVAARMGGADPTGNMRLKLALQKARENNIPKD- 64
Query: 139 VERNIKRASEKG-----QEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCG 193
NI+RA +KG A+ E VYE YG GV++ VEV+TD R+ A VR G
Sbjct: 65 ---NIQRAIDKGVGATDMNAYEEIVYEGYGPAGVAVTVEVMTDNRNRAAADVRHAFSKQG 121
Query: 194 GKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAER 253
G + + G V + F+ V I D+D+L +ALDAGAED+ EDD
Sbjct: 122 GNLGESGCVGWMFKSKGVFVIDKEGHDEDELTLLALDAGAEDLKA----EDDV------- 170
Query: 254 YYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVD-DEAMELNK 303
+++ +T ++Y + L +AGI E + ++P TTIE+ D+A+++ K
Sbjct: 171 -FEIYTTPEDYDAVEQALADAGIETEVAKIT-MIPDTTIELSGDDAVKMQK 219
>gi|336054438|ref|YP_004562725.1| hypothetical protein WANG_0928 [Lactobacillus kefiranofaciens ZW3]
gi|333957815|gb|AEG40623.1| Hypothetical protein WANG_0928 [Lactobacillus kefiranofaciens ZW3]
Length = 242
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 127/243 (52%), Gaps = 21/243 (8%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K GGP+P N L V++KA+ ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKLSREIYMAAKSGGPDPDGNPTLRMVIDKARSNNMPKDNIKRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A +E + E YE Y GGV++ VE LTD R+ + VR GG + GSV
Sbjct: 70 IKKAEGGSEEHYDEITYEGYAPGGVAVFVEALTDNKNRTASDVRVAFTRNGGSLGATGSV 129
Query: 203 MFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY---KV 257
+ F R V++ TDAD+DQ+L +DAG +D+ T +D E Y ++
Sbjct: 130 AYMFDRKGYIVIDRSTTDADEDQVLLDVMDAGGDDL--------QTSDDAYEIYTDPKQL 181
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ D KL +A + ++P T V + E + L+ L + DDV
Sbjct: 182 AAVRDALIKDGYKLADAEL--------TMVPQNTTPVPADKKEQFEHLVDALEDSDDVQN 233
Query: 318 VYT 320
VYT
Sbjct: 234 VYT 236
>gi|163840744|ref|YP_001625149.1| hypothetical protein RSal33209_2002 [Renibacterium salmoninarum
ATCC 33209]
gi|189039430|sp|A9WSE7.1|Y2002_RENSM RecName: Full=Probable transcriptional regulatory protein
RSal33209_2002
gi|162954220|gb|ABY23735.1| conserved hypothetical protein [Renibacterium salmoninarum ATCC
33209]
Length = 251
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 127/238 (53%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K D ++AK ++++ K + A + GGP+ N L + KAK+ VP D ++R IKR
Sbjct: 13 KKAVIDGRRAKSFAKLIKNIEVAARVGGPDMAGNPALELAVTKAKKTSVPNDNIDRAIKR 72
Query: 146 ASEKGQEA--FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S + EA + +YE YG G +I++E LTD R+ + VR V GG MADPGSV
Sbjct: 73 GSGQLGEAIDYQTIMYEGYGPQGTAILIECLTDNKNRAASEVRLAVSRNGGNMADPGSVS 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R +V++ + +D LL LDAGAE+V N ++V+S +
Sbjct: 133 YLFARKGIVSLPQNELSEDDLLMAVLDAGAEEVKSEGEN------------FEVISEPQD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
I + L EAGI ++TD+ +P +E+D E + L L +LDDV VY++
Sbjct: 181 LPAIRSALTEAGIEYDTDDAG-FVPSMQVELDVENAKKFMRLYDALEDLDDVQNVYSN 237
>gi|392403583|ref|YP_006440195.1| UPF0082 protein yeeN [Turneriella parva DSM 21527]
gi|390611537|gb|AFM12689.1| UPF0082 protein yeeN [Turneriella parva DSM 21527]
Length = 250
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 141/244 (57%), Gaps = 17/244 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKGA DAK+ +++++ KE++ A K GG + ++N L KA++ +PKD +ER
Sbjct: 10 IQHRKGAADAKRGAMFTKLAKEIMVAAKLGGGDESANPRLRTATLKARQNSMPKDNIERA 69
Query: 143 IKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+ + E + E VYE YG GG++I+VEVLTDK +R+V ++ K GG MA+ +
Sbjct: 70 IKKGTGELEGVTYEEGVYEGYGPGGIAIMVEVLTDKKSRTVPELKSTFKTNGGTMAEANA 129
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
V + F + ++ ++ + +D +++IALDAGAED + +DD E+ + V ++
Sbjct: 130 VAYLFDKKGLILVEGDNITEDDVMEIALDAGAED-----IEKDD------EKVFAVKTSV 178
Query: 262 DNYTDITT----KLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+++ + + KL G ++ + +P TTI V+ E + ELI L + DDV
Sbjct: 179 NDFHAVLSAMEPKLAAKGYKI-VESALKYIPQTTITVEGEKAKEALELIEALEDNDDVQN 237
Query: 318 VYTD 321
VYT+
Sbjct: 238 VYTN 241
>gi|414168791|ref|ZP_11424754.1| UPF0082 protein [Afipia clevelandensis ATCC 49720]
gi|410887527|gb|EKS35337.1| UPF0082 protein [Afipia clevelandensis ATCC 49720]
Length = 248
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 127/246 (51%), Gaps = 27/246 (10%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++ ++ +E+ A K G P+P N L + A+ ++PKD +ER
Sbjct: 10 IMHRKGKQDAMRSKMFGKLAREITVAAKLGTPDPAMNPRLRLAITAARAENMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A E + E YE YG GGV+++VE LTD R+ + +R GG + + GSV
Sbjct: 70 IKKAIGSDGENYDEMRYEGYGPGGVAVIVEALTDNRNRAASDIRSYFTKSGGNLGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R V+ A D +L+ A+DAGA+DV +E ++V+++ +
Sbjct: 130 SFMFDRVGVIEYDAKVASDDAMLEAAIDAGADDVAS------------SEDGHEVLASPE 177
Query: 263 NYTDITTKL-------REAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
Y ++ L R+A + ++ P TI VDDE E +L+ L E DDV
Sbjct: 178 TYREVAKALEGKFGEARKAALIWK--------PQNTITVDDETGEKLFKLLDLLNEHDDV 229
Query: 316 DAVYTD 321
VY +
Sbjct: 230 QNVYAN 235
>gi|390955239|ref|YP_006418997.1| YebC/PmpR family DNA-binding regulatory protein [Aequorivita
sublithincola DSM 14238]
gi|390421225|gb|AFL81982.1| DNA-binding regulatory protein, YebC/PmpR family [Aequorivita
sublithincola DSM 14238]
Length = 244
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 133/244 (54%), Gaps = 9/244 (3%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR RK + + +K ++R+GK+++ AVK+GGP+P +N+ L AV++ AK +++P
Sbjct: 1 MGRAFEFRKARKMKRWSAMSKAFTRIGKDIVMAVKEGGPDPDANSRLRAVIQNAKAVNMP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K+ VER IKRAS+K F E ++E Y G+++++E TD TR+VA VR C G
Sbjct: 61 KENVERAIKRASDKSLGDFKEVLFEGYAQHGIAVLIETATDNNTRTVANVRMNFNKCNGS 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV+F F +K D D ++L +D G E++ +ED E
Sbjct: 121 LGTSGSVVFMFDHTCNFRVKDNDFDLEELELELIDHGVEEIFR--------NEDEDEPGV 172
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+ + +++ I L E I +G E +P T ++++E ++L+ +L E DDV
Sbjct: 173 MIYAPFESFGAIQAYLEENNIEI-ISSGFERIPQVTKKLNEEEAADVEKLLERLEEDDDV 231
Query: 316 DAVY 319
VY
Sbjct: 232 QNVY 235
>gi|404379669|ref|ZP_10984723.1| UPF0082 protein [Simonsiella muelleri ATCC 29453]
gi|294483117|gb|EFG30804.1| UPF0082 protein [Simonsiella muelleri ATCC 29453]
Length = 245
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 136/246 (55%), Gaps = 15/246 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +K DA++ K+++++ KE+ A ++GG +P SN L ++KA + ++PKD
Sbjct: 10 KWANIQHKKARVDAQRGKIFTKLIKEITVAAREGGGDPASNPRLRLAMDKAWDANMPKDN 69
Query: 139 VERNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
V+R I + + + +IE YE YG GG +++V+ +TD TR+VA VR GG +
Sbjct: 70 VQRAIDKGTGNLEGVDYIELRYEGYGIGGAALMVDCMTDNKTRTVADVRHAFTKNGGNLG 129
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G V F F + FTDAD+D+L++ AL+AGAEDVI DD E +V
Sbjct: 130 TDGCVAFNFVHQGY--LVFTDADEDKLMEAALEAGAEDVI-----VDD------EGIIEV 176
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
++T ++ + + L AG + + + T+ D+A+++ K L+ L LDDV
Sbjct: 177 ITTPSDWASVKSALETAGFTSQAGDVTMRAQNETVLTGDDAVKMQK-LLDALESLDDVQD 235
Query: 318 VYTDQI 323
VYT +
Sbjct: 236 VYTSAV 241
>gi|358467079|ref|ZP_09176848.1| hypothetical protein HMPREF9093_01324 [Fusobacterium sp. oral taxon
370 str. F0437]
gi|357068390|gb|EHI78399.1| hypothetical protein HMPREF9093_01324 [Fusobacterium sp. oral taxon
370 str. F0437]
Length = 249
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 134/247 (54%), Gaps = 19/247 (7%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RKGAQD K+AKL+++ G+E+ A K+GG +P N L +EKAK ++PKDI
Sbjct: 6 KWNNIQHRKGAQDKKRAKLFTKFGRELTIAAKEGGGDPNFNPRLRLAIEKAKAGNMPKDI 65
Query: 139 VERNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ER IK+ S + + F E YE YG G + +VE +TD R+ + +R G +
Sbjct: 66 LERAIKKGSGELEGVDFTEMRYEGYGPAGTAFIVEAVTDNKNRTASEMRMTFSRKDGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G+V + F++ ++ +K D D+ + AL+AGAEDV E + ++V
Sbjct: 126 ADGAVSWMFKKKGIITVKSEGIDTDEFMMAALEAGAEDVEE------------TDGVFEV 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIA---KLLELDD 314
+ + + L+ AG +E D ++P T+E+ D +E K+++A L +LDD
Sbjct: 174 TTEYTEFQTVLENLKNAGYQYE-DAEITMIPENTVEITD--LETAKKVMALYDALEDLDD 230
Query: 315 VDAVYTD 321
VY++
Sbjct: 231 SQNVYSN 237
>gi|456865061|gb|EMF83426.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira weilii
serovar Topaz str. LT2116]
Length = 249
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 134/237 (56%), Gaps = 13/237 (5%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A D+K+ +++R+GKE+ A K GG +P N L + KAK +++PKD +ER IK+
Sbjct: 13 KKDAIDSKRGAIFTRIGKEITVAAKMGGGDPEGNPRLRLAILKAKSVNMPKDNIERAIKK 72
Query: 146 ASEKGQEAFIEK-VYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMF 204
+ + E+ +YE +G GG++I+V +TDK +R+ ++ ++ GG +A GSV
Sbjct: 73 GTGDLEGVVYEECLYECFGSGGIAIMVSAVTDKKSRTTPEIKSILTKLGGSLATSGSVSR 132
Query: 205 KFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNY 264
F R V+ ++ + +D+L+D+A+ AGAEDVI NE + Y+V++T D+Y
Sbjct: 133 LFERKGVIVLESSQIGEDELVDLAVGAGAEDVI----NEGEV--------YRVITTPDDY 180
Query: 265 TDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ L E G+ E + +++ D E E +LI +L DDV +V ++
Sbjct: 181 ESVLHALNEKGLKSEESEIRYIALVSSEIADKEVAEKVMKLIEQLDGHDDVTSVTSN 237
>gi|404371603|ref|ZP_10976907.1| YebC/PmpR family DNA-binding regulatory protein [Clostridium sp.
7_2_43FAA]
gi|226912271|gb|EEH97472.1| YebC/PmpR family DNA-binding regulatory protein [Clostridium sp.
7_2_43FAA]
Length = 245
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 122/223 (54%), Gaps = 15/223 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I +KG DAK+ K+++++GKE++ AVK GGP P +N L V+ KAK ++P D + R+
Sbjct: 10 IQNKKGKADAKRGKIFTKLGKEIVIAVKNGGPVPDTNPKLRDVIAKAKAANMPNDTITRS 69
Query: 143 IKRASEKGQEAFIEK-VYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+AS + EK VYE YG GV+++VE LTD RS VR GG M G
Sbjct: 70 IKKASGELAGVDYEKIVYEGYGPSGVAVIVETLTDNKNRSAGNVRSAFTKGGGNMGATGC 129
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
V F F+ + I+ D D+D+++ +ALDAGAED E + + +T
Sbjct: 130 VGFMFQEKGEIVIEREDKDEDEIMMLALDAGAEDFA------------AEEEVFVITTTP 177
Query: 262 DNYTDITTKLREAGIPFETDNGSELLPITTIEVD-DEAMELNK 303
+++ + L G+ F + +++P T E++ D+A + K
Sbjct: 178 EDFGTVREALESNGLEF-LEAAVKMVPDTYTEINEDDAKKFQK 219
>gi|397689746|ref|YP_006527000.1| Transcriptional regulator [Melioribacter roseus P3M]
gi|395811238|gb|AFN73987.1| Transcriptional regulator [Melioribacter roseus P3M]
Length = 243
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 136/238 (57%), Gaps = 16/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++++ KE+ A ++GG +P N L ++ AK ++P D +ER IK+
Sbjct: 13 KKAALDAKRGKLFTKLIKEITIAARQGGGDPEGNPRLRLAIDNAKAANMPADNIERAIKK 72
Query: 146 ASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMF 204
A+ + + A + E VYE YG GG++I+VE TD R+VA VR + GG + + SV +
Sbjct: 73 ATGELEGATYYEVVYEGYGPGGIAILVEAATDNKNRTVAEVRHIFSKNGGSLGESNSVAW 132
Query: 205 KFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNY 264
F R ++ +K +D++++I +DAGA+D+ T+ED +++VV+T +++
Sbjct: 133 MFERKGIITVKRDGMSEDEMMEIIIDAGADDL--------QTEED----FFEVVTTLESF 180
Query: 265 TDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ L + G+ E N S + + + V E E +LI L + DDV V+T+
Sbjct: 181 EPVRRALVDKGLQVE--NASLQWIAKNQVAVKGEEAEKVMKLIESLEDNDDVQNVFTN 236
>gi|316932640|ref|YP_004107622.1| hypothetical protein [Rhodopseudomonas palustris DX-1]
gi|315600354|gb|ADU42889.1| protein of unknown function DUF28 [Rhodopseudomonas palustris DX-1]
Length = 248
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 130/246 (52%), Gaps = 27/246 (10%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA+++KL+S++ +E+ A K G P+P N L A + A+ ++PKD +ER
Sbjct: 10 IMHRKGRQDAQRSKLFSKLAREITVAAKLGTPDPAMNPRLRAAVLAARAENMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A E + E YE YG GGV+++VE LTD R+ + +R GG + + GSV
Sbjct: 70 IKKAIGGDSENYDEIRYEGYGPGGVAVIVEALTDNRNRAASDIRSFFTKSGGNLGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R ++ A D +LD A++AGA+DV+ +E ++V ++ +
Sbjct: 130 SFMFDRTGIIEYDADKASADDMLDAAIEAGADDVVS------------SESGHEVYASQE 177
Query: 263 NYTDITTKL-------REAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+ D+ L R+A + ++ P T+ VDDE E +L+ L + DDV
Sbjct: 178 TFRDVAKALEAKFGEARKAAVIWK--------PQNTVAVDDETGEKLFKLMDALNDHDDV 229
Query: 316 DAVYTD 321
VY +
Sbjct: 230 QNVYAN 235
>gi|319786203|ref|YP_004145678.1| hypothetical protein Psesu_0589 [Pseudoxanthomonas suwonensis 11-1]
gi|317464715|gb|ADV26447.1| protein of unknown function DUF28 [Pseudoxanthomonas suwonensis
11-1]
Length = 241
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 140/254 (55%), Gaps = 28/254 (11%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR S I RK A DAK+ K+++++ +E+ A + GG +P +N L A ++K+ ++
Sbjct: 1 MGRGPS-IEARKNATDAKRGKIFTKLIREIGVAARAGGGDPANNPRLRAAVDKSLASNMS 59
Query: 136 KDIVERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGG 194
KD++ER IK+A+ + + E+V YE Y GGV+++V+ LTD R+VA VR CGG
Sbjct: 60 KDVIERAIKKATGELEGVEYEEVRYEGYAPGGVAVIVDCLTDNRVRTVADVRHAFSKCGG 119
Query: 195 KMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERY 254
M GSV F F+R V++ + AD++++ + A++ GA+DV+ P ED A
Sbjct: 120 NMGTEGSVSFMFKRLGVLSYE-AGADEEKITEAAIEGGADDVVVYP-------EDGA--- 168
Query: 255 YKVVSTSDNYTDITTKLREAG-------IPFETDNGSELLPITTIEVDDEAMELNKELIA 307
VV+ +N+ + L AG I F DN I V E + ++L+
Sbjct: 169 IDVVTAPENFDAVKQALEAAGLAPGYAEITFRADN--------DIAVSGETAQQVQKLLH 220
Query: 308 KLLELDDVDAVYTD 321
L +LDDV VY++
Sbjct: 221 MLEDLDDVQNVYSN 234
>gi|312898903|ref|ZP_07758291.1| conserved hypothetical protein TIGR01033 [Megasphaera
micronuciformis F0359]
gi|310620065|gb|EFQ03637.1| conserved hypothetical protein TIGR01033 [Megasphaera
micronuciformis F0359]
Length = 255
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 133/244 (54%), Gaps = 22/244 (9%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +KG DA + K+ +++ +E+ AV+ GG +PT N L L+KAKE ++PK+
Sbjct: 17 ANIKRKKGKNDAVRGKITTKISREITIAVRMGGADPTGNMRLKLALQKAKENNIPKE--- 73
Query: 141 RNIKRASEKGQ-----EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
NI RA +KG +++ E VYE YG GV++ V VLTD R+ A VR + GG
Sbjct: 74 -NINRAIQKGAGTLEGQSYEEIVYEGYGPAGVALTVNVLTDNRNRAAADVRHLFSKHGGN 132
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
M + G V + F+ + + D+D+L+++ALDAGA+D+ + DE Y
Sbjct: 133 MGETGCVSWMFKNLGLFVVAKDAVDEDKLMEVALDAGADDI------RTEGDE------Y 180
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
++V+T + Y + L + IP E + ++P TTI + E + + +I +LDDV
Sbjct: 181 EIVTTPEAYDTVEQALADHNIPTEHAQIT-MVPDTTIALSPEDAQKLENMIDAFDDLDDV 239
Query: 316 DAVY 319
VY
Sbjct: 240 QDVY 243
>gi|294782999|ref|ZP_06748323.1| glucose-1-phosphate adenylyltransferase [Fusobacterium sp.
1_1_41FAA]
gi|294479877|gb|EFG27654.1| glucose-1-phosphate adenylyltransferase [Fusobacterium sp.
1_1_41FAA]
Length = 249
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 134/247 (54%), Gaps = 19/247 (7%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RKGAQD K+AKL+++ G+E+ A K+GG +P N L +EKAK ++PKDI
Sbjct: 6 KWNNIQHRKGAQDKKRAKLFTKFGRELTIAAKEGGSDPNFNPRLRLAIEKAKAGNMPKDI 65
Query: 139 VERNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ER IK+ S + + F E YE YG G + +VE +TD R+ + +R G +
Sbjct: 66 LERAIKKGSGELEGVDFTEMRYEGYGPAGTAFIVEAVTDNKNRTASEMRMTFSRKDGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G+V + F++ ++ +K D D+ + AL+AGAEDV E + ++V
Sbjct: 126 ADGAVSWMFKKKGIITVKSEGIDMDEFMMAALEAGAEDVEEN------------DGVFEV 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIA---KLLELDD 314
+ + + L+ AG +E D ++P T+E+ D +E K+++A L +LDD
Sbjct: 174 TTEYTEFQTVLENLKNAGYQYE-DAEITMIPENTVEITD--LETAKKVMALYDALEDLDD 230
Query: 315 VDAVYTD 321
VY++
Sbjct: 231 SQNVYSN 237
>gi|284991602|ref|YP_003410156.1| hypothetical protein Gobs_3179 [Geodermatophilus obscurus DSM
43160]
gi|284064847|gb|ADB75785.1| protein of unknown function DUF28 [Geodermatophilus obscurus DSM
43160]
Length = 250
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 130/239 (54%), Gaps = 16/239 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K DAK+ KL++++ K + A + GG +P N L ++KAK+ VP D ++R +KR
Sbjct: 13 KKAGIDAKRGKLFAKLIKNIEVAARTGGGDPAGNPTLFDAIQKAKKSSVPNDNIDRAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
+ E G + YE Y GGV++++E LTD RS VR + GG MADPGSV
Sbjct: 73 GAGLEAGGVDYQTITYEGYAAGGVAVLIECLTDNKNRSAMEVRTAMTRNGGSMADPGSVS 132
Query: 204 FKFRRARVVNI-KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
+ F R V+ + K D+D +L LDAGAE+V ++ DT ++VV
Sbjct: 133 YLFSRKGVIVVPKSATVDEDTVLMAVLDAGAEEV----RDQGDT--------FEVVCEPT 180
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ + T L++AGI +++ + +P ++E+D+EA LI L + DDV VY +
Sbjct: 181 DLVAVRTALQDAGIDYDSADAG-FVPSVSVELDEEAAGKVFRLIDALEDCDDVQNVYAN 238
>gi|222149669|ref|YP_002550626.1| hypothetical protein Avi_3631 [Agrobacterium vitis S4]
gi|254765087|sp|B9JRY6.1|Y3631_AGRVS RecName: Full=Probable transcriptional regulatory protein Avi_3631
gi|221736651|gb|ACM37614.1| conserved hypothetical protein [Agrobacterium vitis S4]
Length = 248
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 130/239 (54%), Gaps = 13/239 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QD+ ++K++S++ +E+ A K G P+PT N L ++ AK +PKD +ER
Sbjct: 10 IMHRKGKQDSVRSKMFSKLAREITVAAKAGLPDPTMNARLRLAIQNAKAQSMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+K+AS E + E YE YG GGV+++VE LTD R+ + VR GG + + GSV
Sbjct: 70 VKKASGVDGENYEEVRYEGYGPGGVAVIVEALTDNRNRTASNVRSTFSKAGGALGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F + + K + D D +++ A++AGAEDV +DED + ++ +
Sbjct: 130 SFSFDKVGEITYKASVGDADAVMEAAIEAGAEDVT--------SDEDG----HTIICGFE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ +++ L EA + + P T+ VD++ + +LI L + DDV VY++
Sbjct: 178 DMNEVSKAL-EATLGEAESVKAIWKPQNTVPVDEDKAQSLMKLIETLEDDDDVQNVYSN 235
>gi|410942993|ref|ZP_11374734.1| hypothetical protein GfraN1_01055 [Gluconobacter frateurii NBRC
101659]
Length = 249
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 129/242 (53%), Gaps = 18/242 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKGAQDAK+AK ++++ +E+ A + G P+P SN L A + A+E ++PKD VER
Sbjct: 10 IMHRKGAQDAKRAKQFAKILREITVAARSGLPDPASNPRLRAAITAAREANMPKDNVERA 69
Query: 143 IKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+AS G E ++E YE YG GV+I+VE LTD R+ VR GG + + S
Sbjct: 70 IKKASGAAGGEDYVEVRYEGYGPAGVAIIVEGLTDNRNRTAGEVRAAFSKHGGSLGESNS 129
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
V F F+R VV A +D++L+ A++AGA++ + E +++
Sbjct: 130 VSFMFQRLGVVTYPVDAASEDEMLEAAIEAGADNAV------------LTEEGHEITCEM 177
Query: 262 DNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+N+ + L F ++L P ++ +D+E +LI L + DDV AVY
Sbjct: 178 ENFFAVRDALESR---FGEPQSAKLDWRPENSVSLDEEKARTVLKLIDVLEDNDDVQAVY 234
Query: 320 TD 321
+
Sbjct: 235 AN 236
>gi|402494357|ref|ZP_10841099.1| hypothetical protein AagaZ_08631 [Aquimarina agarilytica ZC1]
Length = 238
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/248 (35%), Positives = 129/248 (52%), Gaps = 13/248 (5%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR RK + + AK ++R+GK+++ AVK+GGP+P SN+ L AV++ AK ++P
Sbjct: 1 MGRAFEFRKARKMKRWSAMAKTFTRIGKDIVMAVKEGGPDPASNSRLRAVIQNAKAANMP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
KD VER IK+AS+K Q + E ++E Y G++I+VE TD R+VA VR C G
Sbjct: 61 KDNVERAIKKASDKDQGDYKEVLFEGYAPHGIAILVETATDNNNRTVANVRAAFNKCNGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV F F I D ++L +D GAE++ E DED Y
Sbjct: 121 LGTSGSVEFMFDHTCNFRINADGIDVEELELEFIDFGAEEIFE--------DEDGVLIYA 172
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
S + I +L I +G E +P T E+ +A+ ++L+ KL E DDV
Sbjct: 173 PFGS----FGAIQKELENRNIEI-LSSGFERIPQVTKELSGDALADVEKLLEKLEEDDDV 227
Query: 316 DAVYTDQI 323
VY +
Sbjct: 228 QNVYHSMV 235
>gi|283784806|ref|YP_003364671.1| hypothetical protein ROD_10531 [Citrobacter rodentium ICC168]
gi|282948260|emb|CBG87831.1| conserved hypothetical protein [Citrobacter rodentium ICC168]
Length = 238
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 130/244 (53%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I G+K A+D +K+Y++ G E+ +A K+G P+P N+ L V+E+AK+ VP
Sbjct: 1 MGRKWANIVGKKTAKDGATSKIYAKFGVEIYAAAKQGEPDPELNSSLKFVIERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A G E F++ YE +G GG ++ E LT + R++A VR + GG
Sbjct: 61 KHVIDKAIDKAKGGGDETFLQGRYEGFGPGGSMVIAETLTSNVNRTIANVRTIFNKKGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV + F V+ K TD D + +I L+A V+ D ED
Sbjct: 121 IGAAGSVSYMFDNTGVIVFKGTDP--DHIFEILLEA--------EVDVRDVTEDEGNIVI 170
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
ST D + I L+ AGI + E++ + +E+ E +E+ + L+ L + DDV
Sbjct: 171 YTEST-DLHKGIAA-LKAAGITEFSTTELEMIAQSEVELSPEDLEIFEGLVDALEDDDDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QKVY 232
>gi|306833043|ref|ZP_07466175.1| glucose-1-phosphate adenylyltransferase [Streptococcus bovis ATCC
700338]
gi|304424942|gb|EFM28076.1| glucose-1-phosphate adenylyltransferase [Streptococcus bovis ATCC
700338]
Length = 241
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 133/244 (54%), Gaps = 16/244 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
SKI +KG DAK+ +++++ +E+ A K GG +P+ N L VL+KA+ ++PKD +
Sbjct: 8 SKIKNKKGEADAKRGAIFNKLSREIFVAAKAGGGDPSMNASLRIVLDKARAANMPKDNIN 67
Query: 141 RNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+A++ G + E YE YG GG++I+V LTD R+ A + + GG M
Sbjct: 68 RAIKKATDVGDTTNYDEVTYEGYGPGGIAILVHTLTDNKKRTDANMHTIFTRNGGNMGST 127
Query: 200 GSVMFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV + F R V++ D D+D +L++ LDAGAED+ ++ +++
Sbjct: 128 GSVAYMFDRKGYIVIDRDNLDLDEDAMLEVILDAGAEDL------------KTSDDAFEI 175
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ + + + L+ + F S ++P + +DDE ++ + L+ KL + DDV
Sbjct: 176 FTEAKEFPAVKEALQVQNLEFAQAQLS-MIPQNYVSLDDEQADILETLVDKLEDDDDVQD 234
Query: 318 VYTD 321
VYT+
Sbjct: 235 VYTN 238
>gi|336063882|ref|YP_004558741.1| hypothetical protein SGPB_0545 [Streptococcus pasteurianus ATCC
43144]
gi|334282082|dbj|BAK29655.1| conserved hypothetical protein [Streptococcus pasteurianus ATCC
43144]
Length = 241
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 133/244 (54%), Gaps = 16/244 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
SKI +KG DAK+ +++++ +E+ A K GG +P+ N L VL+KA+ ++PKD +
Sbjct: 8 SKIKNKKGEADAKRGAIFNKLSREIFVAAKAGGGDPSMNASLRIVLDKARAANMPKDNIN 67
Query: 141 RNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+A++ G + E YE YG GG++I+V LTD R+ A + + GG M
Sbjct: 68 RAIKKATDVGDTTNYDEITYEGYGPGGIAILVHTLTDNKKRTDANMHTIFTRNGGNMGST 127
Query: 200 GSVMFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV + F R V++ D D+D +L++ LDAGAED+ ++ +++
Sbjct: 128 GSVAYMFDRKGYIVIDRDNLDLDEDAMLEVILDAGAEDL------------KTSDDAFEI 175
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ + + + L+ + F S ++P + +DDE ++ + L+ KL + DDV
Sbjct: 176 FTEAKEFPAVKEALQVQNLEFAQAQLS-MIPQNYVSLDDEQADILETLVDKLEDDDDVQD 234
Query: 318 VYTD 321
VYT+
Sbjct: 235 VYTN 238
>gi|336173509|ref|YP_004580647.1| hypothetical protein [Lacinutrix sp. 5H-3-7-4]
gi|334728081|gb|AEH02219.1| UPF0082 protein yeeN [Lacinutrix sp. 5H-3-7-4]
Length = 240
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 132/244 (54%), Gaps = 13/244 (5%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR RK + A +K ++R+GK+++ AVK+GGP+P +N+ L AV++ AK +++P
Sbjct: 1 MGRAFEFRKARKMKRWAAMSKAFTRIGKDIVMAVKEGGPDPDANSRLRAVIQNAKSVNMP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
KD +ER IK+ASEKGQ + E ++E Y G++I+VE TD TR+VA VR C G
Sbjct: 61 KDNIERAIKKASEKGQGDYKEVIFEGYAPHGIAILVETATDNNTRTVANVRSYFNKCDGS 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV+F F I D ++L +D GAE+V D+D Y
Sbjct: 121 LGTSGSVVFMFDHTCNFRINAEGLDPEELELEFIDFGAEEVF--------ADDDGILIY- 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+ +++ I +L + I +G E +P T ++ E ++L+ K+ E DDV
Sbjct: 172 ---APFESFGAIQAELEKREIEI-LSSGFERIPQVTKKITPEQQADVEKLLEKIEEDDDV 227
Query: 316 DAVY 319
VY
Sbjct: 228 QNVY 231
>gi|405980967|ref|ZP_11039296.1| YebC/PmpR family DNA-binding regulatory protein [Actinomyces neuii
BVS029A5]
gi|404392986|gb|EJZ88043.1| YebC/PmpR family DNA-binding regulatory protein [Actinomyces neuii
BVS029A5]
Length = 254
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 87/238 (36%), Positives = 126/238 (52%), Gaps = 16/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++R+ K + A + GG +P N L ++KAK+ VP D ++R +KR
Sbjct: 13 KKAAIDAKRGKLFARLIKNIEVAARTGGGDPNGNPTLYDAIQKAKKNSVPADNIDRAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S E G + +YE YG GV+ +VE LTD R+ + VR GG +ADPGSV
Sbjct: 73 GSGAEAGGADWETIMYEGYGPNGVAFLVECLTDNKNRAASDVRVAFTRNGGNLADPGSVS 132
Query: 204 FKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
+ F R +V + D D+D +L LDAGAE+V D E + V S
Sbjct: 133 YLFSRRGIVEVPKADGVDEDTVLMAVLDAGAEEVT-----------DMGE-VFVVDSDPS 180
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
D+ T L+EAGI + + +E + T I+VD + + LI L + DDV V+T
Sbjct: 181 QVVDVRTALQEAGIDYNSAE-TEWVASTQIDVDLDGLRKTTRLIDALEDSDDVQNVFT 237
>gi|386714943|ref|YP_006181266.1| hypothetical protein HBHAL_3647 [Halobacillus halophilus DSM 2266]
gi|384074499|emb|CCG45992.1| UPF0082 family protein [Halobacillus halophilus DSM 2266]
Length = 250
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 140/242 (57%), Gaps = 16/242 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
S I RKGAQDAK+ KL+ ++ +E+ A ++GG +P N L ++KAK ++P + ++
Sbjct: 8 SNIKRRKGAQDAKRGKLFMKLAREIFMAARQGGGDPEMNPNLRLAVDKAKSNNMPNENID 67
Query: 141 RNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+A+ + + E YE YG GGV+++V+VLTD R+ A VR G + +
Sbjct: 68 RAIKKATGDLEGVNYEEYTYEGYGPGGVAVMVKVLTDNKNRTAADVRHAFNKNDGNLGEN 127
Query: 200 GSVMFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G V F F R VV+ T+AD+++L+ A++AGAE++ +T ED+ +++
Sbjct: 128 GCVSFMFDRKGYLVVDRGETEADEEELMLEAIEAGAEEM--------ETTEDQ----FEI 175
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ ++++D+ L ++G F T + ++P T +D+E +E +LI L + DDV
Sbjct: 176 YAEPESFSDVKAALEKSGYSFVTSEVT-MIPETYTPLDEEGVEKMLKLIDMLEDNDDVQE 234
Query: 318 VY 319
VY
Sbjct: 235 VY 236
>gi|372325544|ref|ZP_09520133.1| hypothetical protein OKIT_1676 [Oenococcus kitaharae DSM 17330]
gi|366984352|gb|EHN59751.1| hypothetical protein OKIT_1676 [Oenococcus kitaharae DSM 17330]
Length = 240
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 132/241 (54%), Gaps = 16/241 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ ++ A K GG +P++N L V++KAK ++PKD V+R
Sbjct: 10 IQGRKNAQDAKRGKIFQKISHDLYVAAKAGGADPSANASLRLVMDKAKAANMPKDNVQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ +A+ G F E YE Y GG++++VE TD I R+V+ VR GG + GSV
Sbjct: 70 LDKATGAGDIKFEEATYEGYAPGGIAVLVETSTDNINRTVSTVRNSFSHHGGALGTTGSV 129
Query: 203 MFKF-RRARVV--NIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
F+F RR V + + +DQ+++ A+DAGAEDV ++ +++ S
Sbjct: 130 SFQFDRRGHFVIDREEHPEITEDQVMEDAIDAGAEDV------------QTSDEAFEIYS 177
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
++ + L + G + ++P ++V + E ++L+ +L + DDV AVY
Sbjct: 178 DPTDFAAVEDSLVKKGYDL-AEAEITMIPQNPMDVPEADQEKFEKLVDELEDNDDVLAVY 236
Query: 320 T 320
T
Sbjct: 237 T 237
>gi|320103075|ref|YP_004178666.1| hypothetical protein Isop_1532 [Isosphaera pallida ATCC 43644]
gi|319750357|gb|ADV62117.1| protein of unknown function DUF28 [Isosphaera pallida ATCC 43644]
Length = 247
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 137/249 (55%), Gaps = 24/249 (9%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
++ +A RKG DA++ KL+S++ + + A K G PNP SN L +EKA++ PK+
Sbjct: 6 HAANVAHRKGVVDARRGKLFSKLCRAIYVAAKNGDPNPESNLRLRYAIEKARQFSCPKEN 65
Query: 139 VERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ER+IK+A+ E G + + E +YE YG GGV+++ EVLTD R+ +R+ GG +
Sbjct: 66 IERSIKKATGELGADNYEEVLYEGYGPGGVAVLCEVLTDNRNRTAGELRKAFDVAGGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G V + F + V+ + T +D+L++I L+AGAED + P +Y++
Sbjct: 126 STGCVSYLFAKKGVILVNQTAIAEDELMEIVLEAGAED-MHPDSG-----------FYEI 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELD-- 313
+ I L + I E+ +EL +P TT+++D +EL K+++ LD
Sbjct: 174 TCDPKSLDAIKQALVDRHIEIES---AELTYIPSTTVDLD---VELGKKMLKLREALDDN 227
Query: 314 -DVDAVYTD 321
DV VY++
Sbjct: 228 EDVQNVYSN 236
>gi|295425963|ref|ZP_06818638.1| glucose-1-phosphate adenylyltransferase [Lactobacillus amylolyticus
DSM 11664]
gi|295064346|gb|EFG55279.1| glucose-1-phosphate adenylyltransferase [Lactobacillus amylolyticus
DSM 11664]
Length = 243
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 126/242 (52%), Gaps = 19/242 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K GGP+P+ N L V++KA+ ++PK+ +ER
Sbjct: 10 IQGRKNAQDAKRGKIFQKLSREIYMAAKSGGPDPSGNPNLRMVIDKARANNMPKNNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A E + E YE Y GGV++ VE LTD R+ + VR GG + GSV
Sbjct: 70 IKKAEGNSDEHYDEITYEGYAPGGVAVFVEALTDNKNRTASDVRVAFTRNGGSLGATGSV 129
Query: 203 MFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R V++ TDAD+DQ+L +DAG +D+ DD +++ +
Sbjct: 130 SYMFDRKGYIVIDRSTTDADEDQVLLDVMDAGGDDL----QTSDDA--------FEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+ + L + G +EL +P T V + E + L+ L + DDV V
Sbjct: 178 PKQFAQVRDALEKDGYKLAN---AELTMIPKNTTPVPADKKEQFEHLVDALEDNDDVQNV 234
Query: 319 YT 320
YT
Sbjct: 235 YT 236
>gi|377573390|ref|ZP_09802453.1| hypothetical protein MOPEL_021_00550 [Mobilicoccus pelagius NBRC
104925]
gi|377537933|dbj|GAB47618.1| hypothetical protein MOPEL_021_00550 [Mobilicoccus pelagius NBRC
104925]
Length = 256
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 132/242 (54%), Gaps = 19/242 (7%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++++ K + A + GG +P N L ++KAK+ VP D ++R +KR
Sbjct: 13 KKAAIDAKRGKLFAKLIKNIEVAARTGGGDPAGNPTLYDAIQKAKKSSVPNDNIDRAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S E G + +YE Y GGV++++E LTD R+ VR + GG +ADPGSV
Sbjct: 73 GSGAEAGGADWQTIMYEGYAPGGVAVLIECLTDNRNRAATEVRVALTRNGGSLADPGSVA 132
Query: 204 FKFRRARVVNIKFTDAD----KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
+ F R VV + D +D LL++ LDAGA++V ED D ++++S
Sbjct: 133 YNFARKGVVVVPKEQKDGEITEDSLLEVVLDAGADEV------EDYGDS------FRIIS 180
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ ++ + T L+EAGI +++ +E +P + +D E ++ L + DDV VY
Sbjct: 181 EASDFVAVRTALQEAGIDYDSAE-AEFVPNLQVPLDVEGARKMMRVVDALEDSDDVQNVY 239
Query: 320 TD 321
+
Sbjct: 240 VN 241
>gi|229829046|ref|ZP_04455115.1| hypothetical protein GCWU000342_01131 [Shuttleworthia satelles DSM
14600]
gi|229792209|gb|EEP28323.1| hypothetical protein GCWU000342_01131 [Shuttleworthia satelles DSM
14600]
Length = 242
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 131/243 (53%), Gaps = 17/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +K DA K K+++ +G+E+ AVK+GGP+P +N+ L V+ KAK +VP D +E
Sbjct: 8 ANIKHKKEKNDAAKGKIFTVIGREIAVAVKEGGPDPGNNSKLRDVIAKAKANNVPNDTIE 67
Query: 141 RNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+A+ +I+ YE YG G +I+V+ LTD R+ A VR G + P
Sbjct: 68 RGIKKAAGDADSVNYIQATYEGYGPSGTAIIVQCLTDNKNRTAADVRNAFSKGQGSVGTP 127
Query: 200 GSV--MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G V MF R +V+ + TD D ++ +ALDAGA+DV E EDD+ + +
Sbjct: 128 GCVSYMFDERGQIIVDKEATDMSADDIMMMALDAGADDVEE----EDDS--------FVI 175
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLL-ELDDVD 316
S+ +++ + L + G+P D ++P T +++ E N I LL E DDV
Sbjct: 176 TSSPADFSAVREALEKEGLPM-ADASVTMVPQTYVQLTSEEDIRNINRILDLLDESDDVQ 234
Query: 317 AVY 319
VY
Sbjct: 235 EVY 237
>gi|418961037|ref|ZP_13512924.1| hypothetical protein SMXD51_03578 [Lactobacillus salivarius SMXD51]
gi|380344704|gb|EIA33050.1| hypothetical protein SMXD51_03578 [Lactobacillus salivarius SMXD51]
Length = 242
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 130/241 (53%), Gaps = 18/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K GGP+P N L +++KA+ ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKISREIYMAAKSGGPDPDGNPQLRLIMDKARAANMPKDNIKRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
I +A+ G + E YE YG GV+I+V LTD R+ +AVR GG + + GSV
Sbjct: 70 IDKATGTGGADYEEITYEGYGPAGVAILVHALTDNRNRTASAVRADFNRNGGNLGETGSV 129
Query: 203 MFKFRRARVVNI--KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
F F R + I + D D+DQ+ + ++AG ED+ ++ +++ +
Sbjct: 130 SFMFDRKGYIAIAREDLDVDEDQMFEDVIEAGGEDL------------QTSDEVFEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ D+ +L++ ++ ++P T+ V + +E + LI +L + DDV VY
Sbjct: 178 PKTFADVRDELQKK---YDLATAELTMVPQNTVPVPADKVEQLQRLIDRLEDEDDVSEVY 234
Query: 320 T 320
T
Sbjct: 235 T 235
>gi|317124985|ref|YP_004099097.1| hypothetical protein Intca_1858 [Intrasporangium calvum DSM 43043]
gi|315589073|gb|ADU48370.1| protein of unknown function DUF28 [Intrasporangium calvum DSM
43043]
Length = 256
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 137/242 (56%), Gaps = 19/242 (7%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A+DAK+ KL++++ K + A ++GG +P N L ++KAK+ VP D ++R +KR
Sbjct: 13 QKAAKDAKRGKLFAKLIKNIEVAARQGGGDPAGNPTLYDAIQKAKKTSVPNDNIDRALKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S E G + +YE Y GV++++E LTD R+ A VR + GG++ADPGSV
Sbjct: 73 GSGAEAGGSDYQTIMYEGYAPNGVALLIECLTDNRNRAAAEVRTALTRNGGQLADPGSVA 132
Query: 204 FKF-RRARVVNIKFT---DADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
+ F R+ V+ +K T + ++Q+L++ LDAGAE+V D E +++VS
Sbjct: 133 YVFSRKGVVIVLKATTSGELSEEQILEVVLDAGAEEV-----------NDNGET-WEIVS 180
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ ++ + T L++AGI +++ S +P + +D + + I L + DDV VY
Sbjct: 181 EASDFVAVRTALQQAGIDYDSAEAS-FVPNLQVPLDLDGAKKMIRCIDALEDSDDVQNVY 239
Query: 320 TD 321
+
Sbjct: 240 AN 241
>gi|340753972|ref|ZP_08690743.1| hypothetical protein FSAG_01578 [Fusobacterium sp. 2_1_31]
gi|422315874|ref|ZP_16397288.1| UPF0082 protein [Fusobacterium periodonticum D10]
gi|229423521|gb|EEO38568.1| hypothetical protein FSAG_01578 [Fusobacterium sp. 2_1_31]
gi|404591835|gb|EKA93860.1| UPF0082 protein [Fusobacterium periodonticum D10]
Length = 249
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 134/245 (54%), Gaps = 19/245 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKGAQD K+AKL+++ G+E+ A K+GG +P N L +EKAK ++PKDI+E
Sbjct: 8 NNIQHRKGAQDKKRAKLFTKFGRELTIAAKEGGSDPNFNPRLRLAIEKAKAGNMPKDILE 67
Query: 141 RNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+ S + + F E YE YG G + +VE +TD R+ + +R G +
Sbjct: 68 RAIKKGSGELEGVDFTEMRYEGYGPAGTAFIVEAVTDNKNRTASEMRMTFSRKDGNLGAD 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
G+V + F++ ++ +K D D+ + AL+AGAEDV E ++ ++V +
Sbjct: 128 GAVSWMFKKKGIITVKSEGIDTDEFMMAALEAGAEDVEE------------SDGVFEVTT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIA---KLLELDDVD 316
+ + L+ AG +E + ++P T+E+ D +E K+++A L +LDD
Sbjct: 176 EYTEFQTVLENLKNAGYQYEEAEIT-MIPENTVEITD--LETAKKVMALYDALEDLDDSQ 232
Query: 317 AVYTD 321
VY++
Sbjct: 233 NVYSN 237
>gi|291563835|emb|CBL42651.1| conserved hypothetical protein TIGR01033 [butyrate-producing
bacterium SS3/4]
Length = 242
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 139/244 (56%), Gaps = 19/244 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
S I +K DA K K+++ +G+E+ AVK+GG +P +N+ L V+ KAK ++P D ++
Sbjct: 8 SNIKHKKEKNDAAKGKIFTVIGREIAVAVKEGGADPANNSKLRDVIAKAKANNMPNDTID 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+A+ E + YE YG GV+I+V+ LTD R+ A VR GG +
Sbjct: 68 RGIKKAAGDLNSVNYENLTYEGYGPSGVAIIVDTLTDNKNRTAANVRSAFTKGGGNVGAQ 127
Query: 200 GSVMFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV F F R V++ + D D D+L+ ALDAGAED E E+D+ Y+V
Sbjct: 128 GSVSFMFDRKGQIVIDKEECDMDADELMMAALDAGAEDFSE----EEDS--------YEV 175
Query: 258 VSTSDNYTDITTKLREAGIPF-ETDNGSELLPITTIEV-DDEAMELNKELIAKLLELDDV 315
++ DN++ + L +AGIP E D ++P +E+ D+EA++ + ++ L E DDV
Sbjct: 176 ITDPDNFSAVREALEKAGIPMVEAD--ITMIPQNWVELTDEEAIKKMQRILDLLDEDDDV 233
Query: 316 DAVY 319
AVY
Sbjct: 234 QAVY 237
>gi|414341373|ref|YP_006982894.1| hypothetical protein B932_0354 [Gluconobacter oxydans H24]
gi|411026708|gb|AFV99962.1| hypothetical protein B932_0354 [Gluconobacter oxydans H24]
gi|453330651|dbj|GAC87397.1| hypothetical protein NBRC3255_1058 [Gluconobacter thailandicus NBRC
3255]
Length = 249
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 129/242 (53%), Gaps = 18/242 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKGAQDAK+AK ++++ +E+ A + G P+P SN L A + A+E ++PKD VER
Sbjct: 10 IMHRKGAQDAKRAKQFAKILREITVAARSGLPDPASNPRLRAAVTAAREANMPKDNVERA 69
Query: 143 IKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+AS G E ++E YE YG GV+I+VE LTD R+ VR GG + + S
Sbjct: 70 IKKASGAAGGEDYVEVRYEGYGPAGVAIIVEGLTDNRNRTAGEVRAAFSKHGGSLGESNS 129
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
V F F+R VV A +D++L+ A++AGA++ + E +++
Sbjct: 130 VSFMFQRLGVVTYPVDAASEDEMLEAAIEAGADNAV------------LTEEGHEITCEM 177
Query: 262 DNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+N+ + L F ++L P ++ +D+E +LI L + DDV AVY
Sbjct: 178 ENFFAVRDALESR---FGEPQSAKLDWRPENSVSLDEEKARTVLKLIDVLEDNDDVQAVY 234
Query: 320 TD 321
+
Sbjct: 235 AN 236
>gi|149371404|ref|ZP_01890890.1| hypothetical protein SCB49_10937 [unidentified eubacterium SCB49]
gi|149355542|gb|EDM44101.1| hypothetical protein SCB49_10937 [unidentified eubacterium SCB49]
Length = 247
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 87/245 (35%), Positives = 137/245 (55%), Gaps = 5/245 (2%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR RK + + +K ++R+GK+++ AVK+GGP+P SN+ L AV++ AK +++P
Sbjct: 1 MGRAFEFRKARKMKRWSAMSKAFTRIGKDIVMAVKEGGPDPDSNSRLRAVIQNAKSVNMP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
KD VER IKRAS+K Q + E ++E Y G+++++E TD TR+VA VR G
Sbjct: 61 KDNVERAIKRASDKSQGDYKEVLFEGYAQHGIAVLIETATDNNTRTVANVRSYFNKTDGS 120
Query: 196 MADPGSVMFKFRRARVVNIK-FTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERY 254
+ GSV+F F +K D ++L +D G E++ E +EDDTD A
Sbjct: 121 LGTSGSVVFMFDHTCNFRVKAEGLIDLEELELELIDHGVEEIFEDKADEDDTD---AVDG 177
Query: 255 YKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDD 314
+ + +++ I L E I + +G E +P T ++ E +E ++L+ KL E DD
Sbjct: 178 VMIYAPFESFGSIQAYLEENNIEILS-SGFERIPQVTKKLTAEQVEDVEKLLEKLEEDDD 236
Query: 315 VDAVY 319
V VY
Sbjct: 237 VQNVY 241
>gi|387876708|ref|YP_006307012.1| hypothetical protein W7S_16620 [Mycobacterium sp. MOTT36Y]
gi|386790166|gb|AFJ36285.1| hypothetical protein W7S_16620 [Mycobacterium sp. MOTT36Y]
Length = 251
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 128/238 (53%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K +DA++ K ++R+ K + A + GG +P N L ++KAK+ VP D +ER KR
Sbjct: 13 QKAVKDARRGKEFARLIKNIEVAARTGGGDPAGNPTLYDAIQKAKKTSVPNDNIERARKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
+ E G + +YE YG GV++++E LTD R+ VR V GG MADPGSV
Sbjct: 73 GAGEEAGGADYQTIMYEGYGPNGVAVLIECLTDNRNRAAGEVRVAVTRNGGNMADPGSVS 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R VV ++ +D +L LDAGAEDV +D E ++++S +
Sbjct: 133 YLFTRKGVVTLEKNGLTEDDVLTAVLDAGAEDV-------NDLGES-----FEIISEPTD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ T L++AGI +E+ + S P ++ VD E +L+ L + DDV V+T+
Sbjct: 181 LVAVRTALQDAGIDYESADAS-FQPSVSVPVDVEGARKVFKLVDALEDSDDVQNVWTN 237
>gi|294795135|ref|ZP_06760269.1| glucose-1-phosphate adenylyltransferase [Veillonella sp. 3_1_44]
gi|294453927|gb|EFG22302.1| glucose-1-phosphate adenylyltransferase [Veillonella sp. 3_1_44]
Length = 245
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 131/231 (56%), Gaps = 23/231 (9%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +KG DA KAKL +++G+E+ A + GG +PT N L L+KA+E ++PKD
Sbjct: 6 KWANIKHKKGKTDALKAKLATKIGREITVAARMGGADPTGNMRLKLALQKARENNIPKD- 64
Query: 139 VERNIKRASEKG-----QEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCG 193
NI+RA +KG A+ E VYE YG GV++ VEV+TD R+ A VR G
Sbjct: 65 ---NIQRAIDKGIGATDMNAYEEIVYEGYGPAGVAVTVEVMTDNRNRAAADVRHAFSKQG 121
Query: 194 GKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAER 253
G + + G V + F+ V I D+D+L +ALDAGAED+ +EDD
Sbjct: 122 GNLGESGCVGWMFKSKGVFVIDKEGHDEDELTLLALDAGAEDL----KSEDDV------- 170
Query: 254 YYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVD-DEAMELNK 303
+++ +T +++ + L +AGI E + ++P TTIE+ D+A+++ K
Sbjct: 171 -FEIYTTPEDFDAVEAALADAGIETEVAKIT-MIPDTTIELSGDDAVKMQK 219
>gi|329113838|ref|ZP_08242609.1| Hypothetical protein APO_0612 [Acetobacter pomorum DM001]
gi|326696848|gb|EGE48518.1| Hypothetical protein APO_0612 [Acetobacter pomorum DM001]
Length = 249
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 119/221 (53%), Gaps = 36/221 (16%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKGAQDAK++K + ++ +E+ A + G P+P +N L A + A+E+++PKD +ER
Sbjct: 10 IMHRKGAQDAKRSKQFGKVIRELTVATRSGLPDPAANPRLRAAISAAREVNMPKDTIERA 69
Query: 143 IKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+AS G + ++E YE YG GV+I+VE LTD R+ + VR GG M + S
Sbjct: 70 IKKASGAAGSDDYVEVRYEGYGPAGVAIIVEGLTDNRNRTASDVRAAFSKHGGSMGESNS 129
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVI------------------------ 237
V F FRR V+ + A +D++L+ A++AGAE+V+
Sbjct: 130 VSFMFRRLGVIAYPASVASEDEMLEAAIEAGAENVVSTETSHEVTCEVESFFAVKDALEA 189
Query: 238 ---EP--------PVNEDDTDEDRAERYYKVVSTSDNYTDI 267
EP P N DED+A +K++ T +++ D+
Sbjct: 190 RFGEPESAKLDWRPENTVTLDEDKARSLFKLLDTLEDHDDV 230
>gi|304436500|ref|ZP_07396474.1| glucose-1-phosphate adenylyltransferase [Selenomonas sp. oral taxon
149 str. 67H29BP]
gi|304370546|gb|EFM24197.1| glucose-1-phosphate adenylyltransferase [Selenomonas sp. oral taxon
149 str. 67H29BP]
Length = 242
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 89/248 (35%), Positives = 139/248 (56%), Gaps = 25/248 (10%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +KGA DA + K+ +++G+E+ AV+ GG +PT N L L KAK ++PKD
Sbjct: 8 ANIKRKKGANDAIRGKITTKIGREITIAVRMGGADPTGNMRLKLALSKAKANNIPKD--- 64
Query: 141 RNIKRASEKGQEA-----FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
NI RA +KG A + E +YE YG GG ++++++LTD R+ A VR + GG
Sbjct: 65 -NINRAIQKGLGATEGSNYEEVIYEGYGPGGTAVMLDILTDNRNRTAADVRHLFSKYGGN 123
Query: 196 MADPGSVMFKFRRARVVNI-KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERY 254
+ G V + F++ V + + T D+D LL++ L+AGAED+ +EDD
Sbjct: 124 LGQDGCVSWMFKKKAVFVVERDTFDDEDALLELVLEAGAEDM----RSEDDV-------- 171
Query: 255 YKVVSTSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELD 313
+++V+ D Y I T L E GI ET + ++P TT+ + D+ E + LI L + D
Sbjct: 172 FEIVAEPDAYDAIETVLGEKGI--ETASAEVTMVPDTTVHLVDKDAEKMQTLIDALEDND 229
Query: 314 DVDAVYTD 321
DV VY++
Sbjct: 230 DVQNVYSN 237
>gi|182418631|ref|ZP_02949908.1| conserved hypothetical protein [Clostridium butyricum 5521]
gi|237668011|ref|ZP_04527995.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
E BL5262]
gi|182377493|gb|EDT75047.1| conserved hypothetical protein [Clostridium butyricum 5521]
gi|237656359|gb|EEP53915.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
E BL5262]
Length = 246
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 109/197 (55%), Gaps = 12/197 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I +KG DAK+ K+++++GKE++ AVK GGPN N L V+ KAK ++P D + R+
Sbjct: 10 IQAKKGKADAKRGKVFTKIGKELMMAVKNGGPNLDINAKLRDVVAKAKAANMPNDTITRS 69
Query: 143 IKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+AS E G F VYE YG GV+++VE LTD RS VR GG M G
Sbjct: 70 IKKASGELGSVNFENIVYEGYGPNGVAVIVETLTDNKNRSAGNVRSAFTKGGGNMGTQGC 129
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
V F F+ + I+ D D+D+++ +ALDAGAED + DE E + V +
Sbjct: 130 VGFMFQEKGELVIEKEDRDEDEMMMLALDAGAEDF--------NADE---EEVFVVTTAP 178
Query: 262 DNYTDITTKLREAGIPF 278
+++ + L GI F
Sbjct: 179 EDFGTVREALEAEGIEF 195
>gi|238019729|ref|ZP_04600155.1| hypothetical protein VEIDISOL_01604 [Veillonella dispar ATCC 17748]
gi|237863770|gb|EEP65060.1| hypothetical protein VEIDISOL_01604 [Veillonella dispar ATCC 17748]
Length = 245
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 131/231 (56%), Gaps = 23/231 (9%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +KG DA KAKL +++G+E+ A + GG +PT N L L+KA+E ++PKD
Sbjct: 6 KWANIKHKKGKTDALKAKLATKIGREITVAARMGGADPTGNMRLKLALQKARENNIPKD- 64
Query: 139 VERNIKRASEKG-----QEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCG 193
NI+RA +KG A+ E VYE YG GV++ VEV+TD R+ A VR G
Sbjct: 65 ---NIQRAIDKGVGATDMNAYEEIVYEGYGPAGVAVTVEVMTDNRNRAAADVRHAFSKQG 121
Query: 194 GKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAER 253
G + + G V + F+ V I D+D+L +AL+AGAED+ +EDD
Sbjct: 122 GNLGESGCVGWMFKSKGVFVIDKEGHDEDELTMLALEAGAEDL----KSEDDV------- 170
Query: 254 YYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEV-DDEAMELNK 303
+++ +T ++Y + L +AGI E + ++P TTIE+ D+A+++ K
Sbjct: 171 -FEIYTTPEDYDAVEAALADAGIETEVAKIT-MIPDTTIELTGDDAVKMQK 219
>gi|429123753|ref|ZP_19184285.1| hypothetical protein A966_05658 [Brachyspira hampsonii 30446]
gi|426280322|gb|EKV57337.1| hypothetical protein A966_05658 [Brachyspira hampsonii 30446]
Length = 247
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 136/245 (55%), Gaps = 15/245 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGG-PNPTSNTVLAAVLEKAKELDVPKD 137
+ + I +K A D+KK K++S++ KE+ AVK+GG P+P N L V+ KAK ++P D
Sbjct: 6 KWASIKHKKAANDSKKGKIWSKIAKEITIAVKEGGSPDPDQNARLRMVIVKAKGTNMPND 65
Query: 138 IVERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKM 196
++R IKR + G+ A IE++ YE Y GGV+I+V+V TD R+ A +R + GG +
Sbjct: 66 NIDRAIKRGAGAGEGANIEEMSYEGYAPGGVAIIVDVATDNKNRTAAEIRSIFSKNGGNL 125
Query: 197 ADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
A+ G+V ++F++ VV I ++ L+DI LDAGAED+ ++ E +
Sbjct: 126 AENGAVSWQFKKKAVVIIPAAGNTEESLMDIVLDAGAEDI------------EQDEEVFT 173
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
+ + + I L+ GI E+ + T +++A ++ K +I + DDV
Sbjct: 174 ITGPMEALSSIVDALKAKGIEPESAEIVRVADNTMTIAENDAKKVMK-IIGLFEDHDDVS 232
Query: 317 AVYTD 321
AV T+
Sbjct: 233 AVATN 237
>gi|58040111|ref|YP_192075.1| hypothetical protein GOX1679 [Gluconobacter oxydans 621H]
gi|67462014|sp|Q5FQC7.1|Y1679_GLUOX RecName: Full=Probable transcriptional regulatory protein GOX1679
gi|58002525|gb|AAW61419.1| Nucleotidyltransferase [Gluconobacter oxydans 621H]
Length = 249
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 134/242 (55%), Gaps = 18/242 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKGAQDAK+AK ++++ +E+ A + G P+PTSN L A + A+E+++PKD VER
Sbjct: 10 IMHRKGAQDAKRAKQFAKVLREITVATRSGLPDPTSNPRLRAAISMAREVNMPKDNVERA 69
Query: 143 IKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+AS G + ++E YE YG GV+I+VE LTD R+ VR GG + + S
Sbjct: 70 IKKASGAAGGDDYVEVRYEGYGPAGVAIIVEGLTDNRNRTAGEVRAAFSKHGGSLGETNS 129
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
V F F+R V++ A +D++L+ A++AGA+ N + T+E ++V
Sbjct: 130 VSFMFQRLGVISYPLDVASEDEMLEAAIEAGAD-------NAETTEEG-----HEVTCAM 177
Query: 262 DNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+N+ + L F ++L P ++ +D++ +LI L + DD+ AVY
Sbjct: 178 ENFFAVRDALESR---FGEPQSAKLDWRPENSVTLDEDKARSVMKLIDVLEDSDDIQAVY 234
Query: 320 TD 321
+
Sbjct: 235 AN 236
>gi|167758270|ref|ZP_02430397.1| hypothetical protein CLOSCI_00608 [Clostridium scindens ATCC 35704]
gi|336421715|ref|ZP_08601871.1| hypothetical protein HMPREF0993_01248 [Lachnospiraceae bacterium
5_1_57FAA]
gi|167664167|gb|EDS08297.1| DNA-binding regulatory protein, YebC/PmpR family [Clostridium
scindens ATCC 35704]
gi|336000186|gb|EGN30339.1| hypothetical protein HMPREF0993_01248 [Lachnospiraceae bacterium
5_1_57FAA]
Length = 243
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 127/223 (56%), Gaps = 17/223 (7%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGG-PNPTSNTVLAAVLEKAKELDVPKD 137
+ + I +K DA K K+++++GKE+ AVK+GG +P +N+ L V+ KAK ++P D
Sbjct: 6 KFANIKHKKEKNDAAKGKIFTKLGKELAVAVKEGGSADPANNSRLRDVIAKAKANNMPND 65
Query: 138 IVERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKM 196
+ERNIK+A A E + YE YG G +I+VE LTD R+ + V+ G +
Sbjct: 66 TIERNIKKADSDANAANYEHITYEGYGPNGTAIIVEALTDNKNRTASNVKNAFTKGNGNV 125
Query: 197 ADPGSVMFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERY 254
PG V F F + VV+ + + D D+L+ +ALDAGAED +E E+D+
Sbjct: 126 GTPGCVSFMFDKKGQIVVDKEEYEGDSDELMMLALDAGAEDFVE----EEDS-------- 173
Query: 255 YKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDE 297
Y++++ ++++ + + EAGIP + ++P T +E+ DE
Sbjct: 174 YEILTDPEDFSAVRLAMEEAGIPMAAAEVT-MIPQTYVELTDE 215
>gi|121998989|ref|YP_001003776.1| hypothetical protein Hhal_2210 [Halorhodospira halophila SL1]
gi|166227683|sp|A1WZ62.1|Y2210_HALHL RecName: Full=Probable transcriptional regulatory protein Hhal_2210
gi|121590394|gb|ABM62974.1| protein of unknown function DUF28 [Halorhodospira halophila SL1]
Length = 247
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 138/242 (57%), Gaps = 14/242 (5%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I K AQDAK++K++++ +E+ A + GGP+P N L L++A +++PKD +
Sbjct: 8 ANIKRHKWAQDAKRSKIFTKHIREITVAARLGGPDPEMNARLRLALDRAFAVNLPKDRAD 67
Query: 141 RNIKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
IK+ A + EA+ E YE YG GG +I+V+ +TD R+V+ VR GGKM
Sbjct: 68 AAIKKGAGLEEAEAYEEIRYEGYGPGGSAIMVDCMTDNRNRTVSEVRHAFSKHGGKMGTD 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
SV + F+ R V + D DQ+L++AL+AGA+D++E N+D + E V++
Sbjct: 128 NSVAYLFQE-RGVLVFAPGTDSDQVLEVALEAGADDLVE---NDDGSLE--------VLT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
T + Y + L EAG+ E + ++ P T++++ + LI +L +LDDV VY
Sbjct: 176 TPEAYRGVRDALTEAGLEPEQADVTQ-RPDLTVQIEGDNAVSTARLIERLEDLDDVQHVY 234
Query: 320 TD 321
T+
Sbjct: 235 TN 236
>gi|390443624|ref|ZP_10231412.1| hypothetical protein A3SI_05809 [Nitritalea halalkaliphila LW7]
gi|389666227|gb|EIM77681.1| hypothetical protein A3SI_05809 [Nitritalea halalkaliphila LW7]
Length = 217
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 128/228 (56%), Gaps = 15/228 (6%)
Query: 95 AKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAF 154
+K+++R+GKE++ AVK GGP+P +N L V++ AK +PKD +E IKRAS K ++ +
Sbjct: 2 SKVFTRLGKEIVMAVKAGGPDPATNAKLRTVIQNAKGAAMPKDRIEAAIKRASNKDEKDY 61
Query: 155 IEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI 214
E +YE YG G++I+VE TD R+VA VR GG + GSV F F R V
Sbjct: 62 EEVLYEGYGPYGIAILVETSTDNTNRTVANVRHYFSKYGGSLGTSGSVSFMFTRKAVFRF 121
Query: 215 KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREA 274
D + ++L +D G E++ E NE + + + +++ ++ L E
Sbjct: 122 PQNDLNIEELELELIDFGLEELAE---NEGE---------FFAYTAFEDFGNMQKALEER 169
Query: 275 GIPFETDNGSELLPITTIEVDD-EAMELNKELIAKLLELDDVDAVYTD 321
GI T+ + P TTI +D+ + ELNK LI K+ E DDV+ V+T+
Sbjct: 170 GIEV-TNADFQWFPSTTIALDEAQEEELNK-LIEKIEEDDDVNQVFTN 215
>gi|365926569|ref|ZP_09449332.1| hypothetical protein LmalK35_11858 [Lactobacillus mali KCTC 3596 =
DSM 20444]
gi|420266114|ref|ZP_14768612.1| hypothetical protein LMA_06221 [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|394426353|gb|EJE99202.1| hypothetical protein LMA_06221 [Lactobacillus mali KCTC 3596 = DSM
20444]
Length = 242
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 134/242 (55%), Gaps = 18/242 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I GRK AQDAK+ K++ ++ +E+ A K GGP+P SN L +++KA+ ++PKD ++
Sbjct: 8 NNIQGRKNAQDAKRGKIFQKLSREIYMAAKSGGPDPDSNPQLRLMVDKARAANMPKDNIK 67
Query: 141 RNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
R I +++ + E YE YG G++I+V LTD R+ +AVR GG + + G
Sbjct: 68 RAIDKSTGADGANYEEITYEGYGPAGIAILVHTLTDNRNRTASAVRADFTRNGGNLGESG 127
Query: 201 SVMFKFRRARVVNI--KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
SV F F R + I + D D+DQ+ + ++AGAED+ DD +++
Sbjct: 128 SVSFMFDRRGYIAIDREDLDVDEDQMFEDVINAGAEDL----QTSDDV--------FEIY 175
Query: 259 STSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ ++ ++ +L++ +E D ++P T + V ++ +E + LI +L + DDV
Sbjct: 176 TDPKDFAEVRDELQKK---YELDTAELTMIPQTYVPVPEDKVEQLERLIDRLEDEDDVSE 232
Query: 318 VY 319
VY
Sbjct: 233 VY 234
>gi|399993342|ref|YP_006573582.1| hypothetical protein PGA1_c21770 [Phaeobacter gallaeciensis DSM
17395 = CIP 105210]
gi|398657897|gb|AFO91863.1| hypothetical protein PGA1_c21770 [Phaeobacter gallaeciensis DSM
17395 = CIP 105210]
Length = 246
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 131/243 (53%), Gaps = 17/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKG QDA ++KL+S++ KE+ A K G P+P N L +++AK VPKD+++
Sbjct: 8 ANIQHRKGRQDAARSKLFSKLSKEITVAAKMGDPDPEKNPRLRLAVKEAKSQSVPKDVID 67
Query: 141 RNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
R IK+++ + + E YE YG GV+++VE +TD R+ + VR GG + + G
Sbjct: 68 RAIKKSTAGEGDDYEEIRYEGYGPNGVAVIVEAMTDNRNRTASTVRSTFSKNGGNLGETG 127
Query: 201 SVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
SV F F R V T D D ++ A+DAGAEDV D +E + +
Sbjct: 128 SVGFMFDRKGEVTYSATVGDADTVMMAAIDAGAEDV------------DSSEDGHVIYCA 175
Query: 261 SDNYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+ +++ L G E+D+ ++L+ P TT E+D E M+ +L+ L + DDV V
Sbjct: 176 DTDLNEVSNALE--GELGESDS-TKLVWKPTTTTELDLEGMQKLMKLVDALEDDDDVQRV 232
Query: 319 YTD 321
T+
Sbjct: 233 TTN 235
>gi|342217511|ref|ZP_08710153.1| DNA-binding regulatory protein, YebC/PmpR family [Megasphaera sp.
UPII 135-E]
gi|341593858|gb|EGS36676.1| DNA-binding regulatory protein, YebC/PmpR family [Megasphaera sp.
UPII 135-E]
Length = 242
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 133/247 (53%), Gaps = 24/247 (9%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +KG DA +AK+ +++ +E+ AV+ GG +P N L L+KAKE ++PKD
Sbjct: 6 KWANIKRKKGKNDAIRAKITTKISREITIAVRMGGSDPVGNMRLKLALQKAKENNIPKD- 64
Query: 139 VERNIKRASEKGQEA-----FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCG 193
NIKRA +KG A + + VYE YG GV++ V VLTD R+ A VR V G
Sbjct: 65 ---NIKRAIQKGAGATEGQKYEDIVYEGYGPAGVAVTVNVLTDNRNRAAAEVRHVFSKYG 121
Query: 194 GKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAER 253
M + G V + F + + T AD+D ++++ALDAGA+DV +
Sbjct: 122 SGMGETGCVGWMFHSKGIFGVSKTQADEDTVMEVALDAGADDV------------KTGDN 169
Query: 254 YYKVVSTSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLEL 312
+++V+ D + + L E I ET++ ++P T I ++++ E + LI L +L
Sbjct: 170 EFEIVTAPDVFDAVEQALVEHQI--ETEHAQITMVPDTMITLNEQDAEKMEILIDALEDL 227
Query: 313 DDVDAVY 319
DDV VY
Sbjct: 228 DDVQDVY 234
>gi|403386981|ref|ZP_10929038.1| hypothetical protein CJC12_03887 [Clostridium sp. JC122]
Length = 246
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 130/239 (54%), Gaps = 15/239 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I +KG DAK+ K+++++GKE++ AVK GGP+ +N L V+ KAK ++P D ++R
Sbjct: 10 IQAKKGKVDAKRGKIFTKIGKEIVVAVKNGGPSEDTNAKLRDVVAKAKAANMPNDNIQRA 69
Query: 143 IKRASEKGQEAFIEK-VYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+A+ + E VYE YG G +++VE LTD R+ VR GG M G
Sbjct: 70 IKKAAGELNAVDYETIVYEGYGPEGTAVIVECLTDNKNRTAGNVRYAFSKQGGNMGSTGC 129
Query: 202 VMFKFR-RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
V F F+ + +V K D+D+L+ +ALDAGAED E + V +
Sbjct: 130 VGFMFQSKGEIVIEKIDSIDEDELMMLALDAGAEDFA------------AEEEVFVVTTA 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+++ + L E+GI F + G +++P T E+++E ++++ L + +DV VY
Sbjct: 178 PEDFGKVREALSESGIEF-LEAGVKMIPDTYTEINEETAVKFQKMLDVLEDDEDVQEVY 235
>gi|403738004|ref|ZP_10950732.1| putative transcriptional regulatory protein [Austwickia chelonae
NBRC 105200]
gi|403192116|dbj|GAB77502.1| putative transcriptional regulatory protein [Austwickia chelonae
NBRC 105200]
Length = 255
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 132/242 (54%), Gaps = 19/242 (7%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++++ K + A + GG +P N L ++KAK+ VP D ++R +KR
Sbjct: 13 KKAAIDAKRGKLFAKLIKNIEVAARTGGGDPAGNPTLYDAVQKAKKASVPNDNIDRAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S E G + YE Y GGV++++E LTD R+ + VR + GG +ADPGSV
Sbjct: 73 GSGAEAGGADYQNITYEGYAPGGVAVLIECLTDNRNRAASEVRVALTRNGGSLADPGSVS 132
Query: 204 FKFRRARVVNIKFTDAD----KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
+ F R VV + D +D LL++ LDAGAE+V ED D ++++S
Sbjct: 133 YLFTRKGVVMVPKAQKDGETTEDALLEVVLDAGAEEV------EDYGDS------FRILS 180
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ ++ + T L++AGI +++ +E +P + +D + L+ L + DDV V+
Sbjct: 181 EATDFVGVRTALQQAGIDYDSAE-AEFVPSVEVPLDVDGARRMMRLVDALEDSDDVQNVW 239
Query: 320 TD 321
+
Sbjct: 240 VN 241
>gi|337265810|ref|YP_004609865.1| hypothetical protein Mesop_1288 [Mesorhizobium opportunistum
WSM2075]
gi|336026120|gb|AEH85771.1| protein of unknown function DUF28 [Mesorhizobium opportunistum
WSM2075]
Length = 249
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 129/239 (53%), Gaps = 13/239 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++S++ +E+ A K G P+P+ N L ++ AK + +PKD ++R
Sbjct: 10 IMHRKGRQDAVRSKMFSKLAREITVAAKSGTPDPSMNPRLRLAIQNAKAVSMPKDNIQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
I +AS E + YE YG GGV+++VE LTD RS + VR GG M + GSV
Sbjct: 70 INKASMGDAENYEAVRYEGYGPGGVAVIVEALTDNRNRSASNVRAAFTKAGGAMGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F + RA + + D+++D A++AGA+DV ++DE+ + + +
Sbjct: 130 SFMWDRAGEIYYPASAGSADKVMDAAIEAGADDV--------ESDEEG----HTIYCAFE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
N +++ L EA + P T+ VD+E + +L+A L + DDV +VY +
Sbjct: 178 NLGEVSKAL-EASLGEAESVKLIWKPQNTVPVDEERAQSLMKLVATLEDDDDVQSVYAN 235
>gi|39934172|ref|NP_946448.1| hypothetical protein RPA1097 [Rhodopseudomonas palustris CGA009]
gi|192289697|ref|YP_001990302.1| hypothetical protein Rpal_1287 [Rhodopseudomonas palustris TIE-1]
gi|49036511|sp|P62040.1|Y1097_RHOPA RecName: Full=Probable transcriptional regulatory protein RPA1097
gi|226695901|sp|B3QHR9.1|Y1287_RHOPT RecName: Full=Probable transcriptional regulatory protein Rpal_1287
gi|39648020|emb|CAE26540.1| DUF28 [Rhodopseudomonas palustris CGA009]
gi|192283446|gb|ACE99826.1| protein of unknown function DUF28 [Rhodopseudomonas palustris
TIE-1]
Length = 248
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 130/246 (52%), Gaps = 27/246 (10%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA+++KL+S++ +E+ A K G P+P N L A + A+ ++PKD +ER
Sbjct: 10 IMHRKGRQDAQRSKLFSKLAREITVAAKLGTPDPAMNPRLRAAVLAARAENMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A E + E YE YG GGV+++VE LTD R+ + +R GG + + GSV
Sbjct: 70 IKKAIGGDSENYDEIRYEGYGPGGVAVIVEALTDNRNRAASDIRSFFTKSGGNLGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R ++ A D +LD A++AGA+DV+ +E +++ ++ +
Sbjct: 130 SFMFDRTGIIEYDADKASADDMLDAAIEAGADDVVS------------SEAGHEIYASQE 177
Query: 263 NYTDITTKL-------REAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+ D+ L R+A + ++ P T+ VDDE E +L+ L + DDV
Sbjct: 178 TFRDVAKALEAKFGEARKAAVIWK--------PQNTVAVDDETGEKLFKLMDALNDHDDV 229
Query: 316 DAVYTD 321
VY +
Sbjct: 230 QNVYAN 235
>gi|429745092|ref|ZP_19278535.1| DNA-binding regulatory protein, YebC/PmpR family [Neisseria sp.
oral taxon 020 str. F0370]
gi|429161299|gb|EKY03716.1| DNA-binding regulatory protein, YebC/PmpR family [Neisseria sp.
oral taxon 020 str. F0370]
Length = 241
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 133/246 (54%), Gaps = 15/246 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +K DA++ K+++R+ KE+ A + GG +P SN L ++KA + ++PKD
Sbjct: 6 KWANIQHKKARADAQRGKIFTRLIKEITVAARLGGGDPASNPRLRLAMDKAWDANMPKDN 65
Query: 139 VERNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
V+R I + + + +IE YE YG GG +++V+ +TD TR+VA VR GG +
Sbjct: 66 VQRAIDKGTGNLEGVDYIELRYEGYGIGGAALMVDCMTDNKTRTVADVRHAFNKNGGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G V F F + +TDAD+D L++ AL+AGAEDV+ +ED E V
Sbjct: 126 TDGCVAFNFVHQGY--LVYTDADEDALMEAALEAGAEDVV---AHEDGIIE--------V 172
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
++ ++ I KL EAG + + + T+ ++A ++ K LI L LDDV
Sbjct: 173 ITAPADWAGIKAKLEEAGFTSQDGDVTMRAQNETVLTGEDAAKMQK-LIDALENLDDVQN 231
Query: 318 VYTDQI 323
VYT +
Sbjct: 232 VYTSAV 237
>gi|421450113|ref|ZP_15899489.1| hypothetical protein SEEE6482_16440 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|396067555|gb|EJI75913.1| hypothetical protein SEEE6482_16440 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
Length = 238
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 132/244 (54%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ +A K+G P+P SN+ L V+E+AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGATSKVYAKFGVEIYAAAKQGEPDPESNSALKFVIERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A G E F++ YE +G G ++ E LT + R++A +R + GG
Sbjct: 61 KHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMVIAETLTSNVNRTIANIRTIFNKKGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ G+V + F V+ K T D D + +I LDA DV D T+E+ Y
Sbjct: 121 IGAAGAVSYMFDNTGVIVFKGT--DPDHIFEILLDAEV-DV------RDVTEEEGNIVIY 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+D + I L+ AGI + G E++ + +E+ E +E+ + L+ L + DDV
Sbjct: 172 --TEATDLHKGIAA-LKAAGITEFSTTGLEMIAQSEVELSPEDLEIFEGLVDALEDDDDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QKVY 232
>gi|262375415|ref|ZP_06068648.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
gi|262309669|gb|EEY90799.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
Length = 249
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 87/246 (35%), Positives = 139/246 (56%), Gaps = 22/246 (8%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK QDA + K++++ +E+ +A K GGP+ SN L AV+EKA +++ +D++
Sbjct: 8 ANIKHRKAKQDASRGKVFTKYIRELTTAAKLGGPDTASNPRLRAVVEKALSVNMTRDVIN 67
Query: 141 RNIKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I+R A + + E YE YG GGV+++VE +TD + R+V VR G +
Sbjct: 68 RAIQRGAGGEDNDDLKEVTYEGYGVGGVAVIVETMTDNLNRTVPDVRHCFSKTDGNLGTN 127
Query: 200 GSVMFKFRRARVVNIKFTDAD-KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
GSV F F + I F D +DQ++++AL+AGAED+ V EDD V+
Sbjct: 128 GSVAFLFTKRG--EITFEDVSLEDQIMEVALEAGAEDI---EVTEDD---------ILVI 173
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELL-PITTIEVD--DEAMELNKELIAKLLELDDV 315
+T + + D+ L AG+ ++DN ++ P T E+ D+A ++ K +I L +LDDV
Sbjct: 174 TTPEAFGDVQDALTAAGL--KSDNAEVVMSPSTKAEITDIDQAKKIMK-MIDMLEDLDDV 230
Query: 316 DAVYTD 321
VYT+
Sbjct: 231 QNVYTN 236
>gi|149201067|ref|ZP_01878042.1| hypothetical protein RTM1035_15617 [Roseovarius sp. TM1035]
gi|149145400|gb|EDM33426.1| hypothetical protein RTM1035_15617 [Roseovarius sp. TM1035]
Length = 246
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 123/241 (51%), Gaps = 13/241 (5%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKG QDA +AKL+S+ KE+ A K G P+P N L +++AK +PKD +E
Sbjct: 8 ANIQHRKGRQDAVRAKLFSKFSKEITVAAKMGDPDPDKNPRLRLAIKEAKAQSMPKDNIE 67
Query: 141 RNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
R IK+A E + E YE YG GV+I+VE +TD R+ + VR GG + + G
Sbjct: 68 RAIKKAMGGDAEDYEEIRYEGYGPNGVAIIVEAMTDNRNRTASNVRSTFTKNGGNLGETG 127
Query: 201 SVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
SV F F R V + D D ++ AL+AGAEDV + E + +
Sbjct: 128 SVAFMFERKGEVTYAASVGDADTVMMAALEAGAEDV------------ESGEDGHTIWCA 175
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ +++ + L E + T P TT E+D E+M+ +LI L + DDV V T
Sbjct: 176 DTDLSEVASGL-EGALGESTSTKLVWKPTTTTEMDLESMQKLMKLIEALEDDDDVQRVTT 234
Query: 321 D 321
+
Sbjct: 235 N 235
>gi|116492988|ref|YP_804723.1| hypothetical protein PEPE_1240 [Pediococcus pentosaceus ATCC 25745]
gi|421895079|ref|ZP_16325557.1| conserved hypothetical protein [Pediococcus pentosaceus IE-3]
gi|122265548|sp|Q03EU1.1|Y1240_PEDPA RecName: Full=Probable transcriptional regulatory protein PEPE_1240
gi|116103138|gb|ABJ68281.1| hypothetical protein PEPE_1240 [Pediococcus pentosaceus ATCC 25745]
gi|385271999|emb|CCG90929.1| conserved hypothetical protein [Pediococcus pentosaceus IE-3]
Length = 245
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 124/239 (51%), Gaps = 15/239 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ R+ +E+ AVK GGP+P+SN L +++KA+ ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQRISREIYVAVKAGGPDPSSNPQLRLMMDKARAANMPKDNIKRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ + S G + E YE YG G +I+V LTD R+ AAVR GG + GSV
Sbjct: 70 VDKGSGAGGANYEEITYEGYGPAGTAIIVSALTDNKNRTAAAVRSAFTHHGGSLGASGSV 129
Query: 203 MFKFRRARVVNIKFTDADK--DQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R + I D DK D +++ A+DAGA+DV +E +++ +
Sbjct: 130 SYMFDRKGYIVISREDLDKNEDDMMEDAIDAGADDV------------QTSEEVFEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ + L G + ++P V ++ ++ LI +L + DDV VY
Sbjct: 178 PKEFAAVRDALEAKGYTLANAELT-MIPENETMVPEDKVKQYTGLIDELEDNDDVSEVY 235
>gi|374289149|ref|YP_005036234.1| hypothetical protein BMS_2482 [Bacteriovorax marinus SJ]
gi|301167690|emb|CBW27273.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
Length = 243
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 126/244 (51%), Gaps = 13/244 (5%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +KGA D + ++Y+++ EV AVK GG + ++N +L LEK K+ +VP
Sbjct: 1 MGRKWANIEKKKGAADKLRGQIYTKILFEVQRAVKSGGDDASTNFLLRIALEKCKKNNVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
KD ++R IK+ + + E YE YG GV+I VE T+ TR+VA VR GG
Sbjct: 61 KDNIDRAIKKGLGGDDDGYEEVTYEGYGPDGVAIFVETSTNNTTRTVANVRSYFNKAGGS 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ G++ F F R V I D D+D +D GAE++ + + +
Sbjct: 121 LGTTGTLQFIFTRKAVFEIPQGDLDEDDFTLEMIDCGAEEI------------ELEDGIF 168
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+V + + I+ KL E + E + G E +P T EV DE N +LI KL DDV
Sbjct: 169 EVSGPMEVFGAISKKLEEMNLEPE-EAGLEQIPTTFKEVSDETYLNNMKLIEKLESDDDV 227
Query: 316 DAVY 319
VY
Sbjct: 228 VKVY 231
>gi|408789886|ref|ZP_11201527.1| hypothetical protein B807_340 [Lactobacillus florum 2F]
gi|408520908|gb|EKK20930.1| hypothetical protein B807_340 [Lactobacillus florum 2F]
Length = 246
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 87/239 (36%), Positives = 128/239 (53%), Gaps = 15/239 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ + + A K GG + SN L LEKA+ ++PKD V+R
Sbjct: 10 IQGRKNAQDAKRGKIFQKISRNLYQAAKVGGVDAESNPQLRLELEKARAANMPKDNVQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ +AS G F E YE YG GG +++V LTD R+ AA+R GG + GSV
Sbjct: 70 LDKASGVGGAKFEEVTYEGYGPGGTAVMVSALTDNKNRTAAAIRSAFTHHGGSLGTNGSV 129
Query: 203 MFKFRRARVVNI--KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R V++ T D+D +L ALDAGA+D+ TD + Y++ +
Sbjct: 130 SYMFDRKGFVSVLRDTTTDDEDTMLLSALDAGADDMKA-------TDSE-----YQIFTA 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ T + L++AG +T L P TT EV ++ ++ LI +L E DDV VY
Sbjct: 178 PASMTAVRDALQQAGYQLDTAE-VRLFPETTTEVPEDKVDQYSALIDELSEDDDVQDVY 235
>gi|238926804|ref|ZP_04658564.1| protein of hypothetical function DUF28 [Selenomonas flueggei ATCC
43531]
gi|238885336|gb|EEQ48974.1| protein of hypothetical function DUF28 [Selenomonas flueggei ATCC
43531]
Length = 242
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 88/248 (35%), Positives = 139/248 (56%), Gaps = 25/248 (10%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +KGA DA + K+ +++G+E+ AV+ GG +PT N L L KAK ++PKD
Sbjct: 8 ANIKRKKGANDAIRGKITTKIGREITIAVRMGGADPTGNMRLKLALSKAKANNIPKD--- 64
Query: 141 RNIKRASEKGQEA-----FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
NI RA +KG A + E +YE YG GG ++++++LTD R+ A VR + GG
Sbjct: 65 -NINRAIQKGLGATEGSNYEEVIYEGYGPGGTAVMLDILTDNRNRTAADVRHLFSKYGGN 123
Query: 196 MADPGSVMFKFRRARVVNI-KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERY 254
+ G V + F++ V + + T D+D LL++ L+AGAED+ +EDD
Sbjct: 124 LGQDGCVSWMFKKKAVFVVERDTFDDEDALLELVLEAGAEDM----RSEDDV-------- 171
Query: 255 YKVVSTSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELD 313
+++++ D Y I T L E GI ET + ++P TT+ + D+ E + LI L + D
Sbjct: 172 FEIIAEPDAYDAIETVLGEKGI--ETASAEVTMVPDTTVHLVDKDAEKMQTLIDALEDND 229
Query: 314 DVDAVYTD 321
DV VY++
Sbjct: 230 DVQNVYSN 237
>gi|365854887|ref|ZP_09394951.1| DNA-binding regulatory protein, YebC/PmpR family [Acetobacteraceae
bacterium AT-5844]
gi|363719751|gb|EHM03051.1| DNA-binding regulatory protein, YebC/PmpR family [Acetobacteraceae
bacterium AT-5844]
Length = 250
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 130/237 (54%), Gaps = 14/237 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKGAQDAK+A+ ++++ +E+ + ++G P+P N L + ++ A+ ++ KD ++R
Sbjct: 10 IMHRKGAQDAKRARAFAKLIREITVSARQGLPDPAFNPRLRSAVQAARVANMTKDTIDRA 69
Query: 143 IKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+AS E G E ++E YE YG GV+I+VE LTD R+ + +R GG M + GS
Sbjct: 70 IKKASGEGGGEDYVEMRYEGYGPAGVAIIVEALTDNRNRTASDIRSAFSKFGGAMGETGS 129
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
V F+F R VV + AD D +L+ A++AGA DV + E +++ +
Sbjct: 130 VSFQFERNGVVRYPASIADADTVLEAAIEAGAADV------------ESTEEGHEIRTGI 177
Query: 262 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
++ + L E P E+ E P T+E+D+E +LI L E DDV V
Sbjct: 178 EDLFAVRDVLEEKFGPAESAK-LEWRPNVTVELDEEKARSVMKLIDVLDEHDDVQTV 233
>gi|254821083|ref|ZP_05226084.1| hypothetical protein MintA_14197 [Mycobacterium intracellulare ATCC
13950]
gi|379755331|ref|YP_005344003.1| hypothetical protein OCO_33190 [Mycobacterium intracellulare
MOTT-02]
gi|379762867|ref|YP_005349264.1| hypothetical protein OCQ_34310 [Mycobacterium intracellulare
MOTT-64]
gi|406031561|ref|YP_006730452.1| hypothetical protein MIP_04992 [Mycobacterium indicus pranii MTCC
9506]
gi|378805547|gb|AFC49682.1| hypothetical protein OCO_33190 [Mycobacterium intracellulare
MOTT-02]
gi|378810809|gb|AFC54943.1| hypothetical protein OCQ_34310 [Mycobacterium intracellulare
MOTT-64]
gi|405130108|gb|AFS15363.1| Hypothetical protein MIP_04992 [Mycobacterium indicus pranii MTCC
9506]
Length = 251
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 127/238 (53%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K +DA++ K ++R+ K + A + GG +P N L ++KAK+ VP D +ER KR
Sbjct: 13 QKAVKDARRGKEFARLIKNIEVAARTGGGDPAGNPTLYDAIQKAKKTSVPNDNIERARKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
+ E G + +YE YG GV++++E LTD R+ VR V GG MADPGSV
Sbjct: 73 GAGEEAGGADYQTIMYEGYGPNGVAVLIECLTDNRNRAAGEVRVAVTRNGGNMADPGSVS 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R VV ++ +D +L LDAGAEDV +D E ++++S +
Sbjct: 133 YLFTRKGVVTLEKNGLTEDDVLTAVLDAGAEDV-------NDLGES-----FEIISEPTD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ T L++AGI +E+ S P ++ VD E +L+ L + DDV V+T+
Sbjct: 181 LVAVRTALQDAGIDYESAEAS-FQPSVSVPVDVEGARKVFKLVDALEDSDDVQNVWTN 237
>gi|303249143|ref|ZP_07335383.1| protein of unknown function DUF28 [Desulfovibrio fructosovorans JJ]
gi|302489468|gb|EFL49415.1| protein of unknown function DUF28 [Desulfovibrio fructosovorans JJ]
Length = 245
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 133/240 (55%), Gaps = 14/240 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RK QDAKK+K ++++ KE++ A + GG + NT L + + AK +++PKD +E+
Sbjct: 10 IQARKSVQDAKKSKFFTKVTKELMLAARAGGADTALNTRLKSAIAAAKAVNLPKDKIEQA 69
Query: 143 IKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+ + E E F E +YE YG GGV+I+VE TD R+VA VR ++ GG M + G
Sbjct: 70 IKKGTGELAGENFDEVLYEGYGPGGVAILVEAATDNRNRTVAEVRHLLSKGGGSMGEAGC 129
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
V + F + V + ++QL+++AL+ GAED+ +E D ++V
Sbjct: 130 VGWMFAKKGVFSFPKESFTEEQLMEVALEHGAEDI----ADEGDV--------WEVHCAP 177
Query: 262 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+++ ++ AG+ + D +LP T+ +D E + +LI L + DDV V+T+
Sbjct: 178 EDFDALSGAFEAAGMTID-DAEVSMLPSNTVSLDAENGQKLIKLIDMLEDNDDVQKVHTN 236
>gi|374672304|dbj|BAL50195.1| hypothetical protein lilo_0193 [Lactococcus lactis subsp. lactis
IO-1]
Length = 238
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 129/246 (52%), Gaps = 16/246 (6%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ +A K+G P+P SN+ L V+E+AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGATSKVYAKFGVEIYAAAKQGEPDPESNSSLKFVIERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A G E F++ YE +G G ++ E LT + R++A VR GG
Sbjct: 61 KHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMVIAETLTSNVNRTIANVRTTFHKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ G+V + F V I F D D + +I LDA E D + E
Sbjct: 121 IGAAGAVSYMFDNTGV--IVFEGTDPDHIFEILLDA-----------EVDVRDVTEEEGN 167
Query: 256 KVVST--SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELD 313
VV T +D + I L+ AGI + EL+P + +E+ E +E+ + L+ L + D
Sbjct: 168 IVVYTEPTDLHKGIAA-LKAAGITEFSTTELELIPQSEVELSPEDLEIFEGLVDALEDDD 226
Query: 314 DVDAVY 319
DV VY
Sbjct: 227 DVQKVY 232
>gi|301300038|ref|ZP_07206260.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
salivarius ACS-116-V-Col5a]
gi|385840143|ref|YP_005863467.1| hypothetical protein HN6_00372 [Lactobacillus salivarius CECT 5713]
gi|417810682|ref|ZP_12457361.1| protein of hypothetical function DUF28 [Lactobacillus salivarius
GJ-24]
gi|300214264|gb|ADJ78680.1| UPF0082 protein [Lactobacillus salivarius CECT 5713]
gi|300852356|gb|EFK80018.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
salivarius ACS-116-V-Col5a]
gi|335349478|gb|EGM50978.1| protein of hypothetical function DUF28 [Lactobacillus salivarius
GJ-24]
Length = 242
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 130/241 (53%), Gaps = 18/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K GGP+P N L +++KA+ ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKISREIYMAAKSGGPDPDGNPQLRLIMDKARAANMPKDNIKRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
I +A+ G + E YE YG GV+I+V LTD R+ +AVR GG + + GSV
Sbjct: 70 IDKATGTGGADYEEITYEGYGPAGVAILVHALTDNRNRTASAVRADFNRNGGNLGETGSV 129
Query: 203 MFKFRRARVVNI--KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
F F R + I + D D+DQ+ + ++AG ED+ ++ +++ +
Sbjct: 130 SFMFDRKGYIAIAREDLDVDEDQMFEDVIEAGGEDL------------QTSDEVFEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ D+ +L++ ++ ++P T+ V + +E + LI +L + DDV VY
Sbjct: 178 PKAFADVRDELQKK---YDLATAELTMVPQNTVPVPADKVEQLQRLIDRLEDEDDVSEVY 234
Query: 320 T 320
T
Sbjct: 235 T 235
>gi|163788406|ref|ZP_02182852.1| hypothetical protein FBALC1_08493 [Flavobacteriales bacterium
ALC-1]
gi|159876726|gb|EDP70784.1| hypothetical protein FBALC1_08493 [Flavobacteriales bacterium
ALC-1]
Length = 248
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 132/247 (53%), Gaps = 10/247 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR RK + + +K ++R+GK+++ AVK GGP+P SN+ L A+++ AK +++P
Sbjct: 1 MGRAFEFRKARKMKRWSAMSKAFTRIGKDIVMAVKDGGPDPDSNSRLRAIIQNAKAVNMP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K VER IK+ASEKGQ + E ++E Y G++++VE TD TR+VA VR G
Sbjct: 61 KANVERAIKKASEKGQGDYKEVIFEGYAQHGIAVLVETATDNNTRTVANVRSYFNKTDGS 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDED---RAE 252
+ GSV+F F IK D D ++L +D G E++ E DTDED E
Sbjct: 121 LGTSGSVVFMFDHTCNFKIKGEDLDLEELELELIDFGVEEIFE------DTDEDADGNEE 174
Query: 253 RYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLEL 312
+ + +++ I L E I +G E +P T + E ++L+ KL E
Sbjct: 175 TSILIYAPFESFGKIQAYLEEHSIEI-ISSGFERIPQVTKAITAEQAADVEKLLEKLEED 233
Query: 313 DDVDAVY 319
DDV VY
Sbjct: 234 DDVQNVY 240
>gi|374298163|ref|YP_005048354.1| DNA-binding regulatory protein, YebC/PmpR family [Clostridium
clariflavum DSM 19732]
gi|359827657|gb|AEV70430.1| DNA-binding regulatory protein, YebC/PmpR family [Clostridium
clariflavum DSM 19732]
Length = 242
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 137/244 (56%), Gaps = 16/244 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +K DA++AK+++++G+E+ V++GGP+P SN+ L V+ KAK ++P +
Sbjct: 6 KWANIKRKKEKTDAQRAKIFTKLGREIAVIVRQGGPDPESNSKLRDVIAKAKAANMPNEN 65
Query: 139 VERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ R IK+A+ E + E VYE YG GGV+++VE +TD R+ A VR GG +
Sbjct: 66 IMRCIKKAAGEVDNTDYEEIVYEGYGPGGVAVIVEAMTDNRNRTAADVRHYFDKFGGNLG 125
Query: 198 DPGSVMFKFRRARVVNI-KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
G V F F + V+ I K ++D L+ AL+ GAED TDE+ YY+
Sbjct: 126 TTGCVSFMFDKKGVILIEKNGKINEDDLMMEALEYGAEDF--------STDEE----YYE 173
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDD-EAMELNKELIAKLLELDDV 315
+++ ++++ + L G F E++P T ++ D + +EL +LI L +LDDV
Sbjct: 174 IITAPEDFSKVREGLENKGYEF-IKAEVEMVPQTMTKLTDPKQIELMDKLIEHLEDLDDV 232
Query: 316 DAVY 319
VY
Sbjct: 233 QNVY 236
>gi|381183452|ref|ZP_09892186.1| hypothetical protein KKC_09162 [Listeriaceae bacterium TTU M1-001]
gi|380316655|gb|EIA20040.1| hypothetical protein KKC_09162 [Listeriaceae bacterium TTU M1-001]
Length = 244
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 139/245 (56%), Gaps = 23/245 (9%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQD+K+AK++ ++ KE+ A K G P+PT N L V++KAK ++P D ++R
Sbjct: 10 IQGRKNAQDSKRAKIFQKLAKEIYVAAKNG-PDPTLNPALRLVMDKAKAANMPNDNIDRA 68
Query: 143 IKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
I++AS + E + E YE YG GV+++V LTD R+ VR GG + + GS
Sbjct: 69 IQKASGNQSGENYDEVSYEGYGPSGVAVLVHALTDNKNRTSTNVRVAFNKNGGSLGETGS 128
Query: 202 VMFKF-RRARVVNIKFT-DADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
V + F R+ +V ++ D +D+L+ +A+DAGAED++ ++ +++ +
Sbjct: 129 VAYLFNRKGYLVLLRENLDLSEDELMLLAIDAGAEDIL------------TSDEAFEIFT 176
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEV---DDEAMELNKELIAKLLELDDVD 316
+ ++ + +L AG+ FE +EL I TI +++ E K +I+ L + DDV
Sbjct: 177 EATDFLAVKEQLENAGLTFE---AAELTMIPTIYQKIPENKQAEFEK-MISLLEDDDDVQ 232
Query: 317 AVYTD 321
VYT+
Sbjct: 233 DVYTN 237
>gi|83859818|ref|ZP_00953338.1| hypothetical protein OA2633_07454 [Oceanicaulis sp. HTCC2633]
gi|83852177|gb|EAP90031.1| hypothetical protein OA2633_07454 [Oceanicaulis sp. HTCC2633]
Length = 256
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 130/243 (53%), Gaps = 8/243 (3%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKG QD +AKL+SR+ KE++ AVK GGP+P N L ++ AK +PKD +E
Sbjct: 8 ANIQHRKGRQDKARAKLFSRLSKEIMVAVKMGGPDPDMNPRLRLAVQNAKGQSMPKDNIE 67
Query: 141 RNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
R I +A+ E + E YE +G G+ ++VE TD R+ + +R GG M + G
Sbjct: 68 RAINKAAGGDAEEYFEIRYEGFGPAGIGLIVEASTDNKNRAASDIRAAFSKNGGNMGETG 127
Query: 201 SVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
SV F F + + + AD++ + + A++AGAEDV++ + +DD + Y
Sbjct: 128 SVSFMFDQLGEIRFPASVADEEAIFEAAIEAGAEDVVQEDLVDDDGEPAPEHVIY---CA 184
Query: 261 SDNYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDVDAV 318
++ ++++ L+E F + ++ P IEV + + +L+ L +LDDV V
Sbjct: 185 REDLAEVSSALQE---KFGEAKSANIIWKPQNLIEVTGDKVATVMKLMEALEDLDDVSTV 241
Query: 319 YTD 321
+ +
Sbjct: 242 FAN 244
>gi|262368435|ref|ZP_06061764.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
gi|262316113|gb|EEY97151.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
Length = 249
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 87/246 (35%), Positives = 139/246 (56%), Gaps = 22/246 (8%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK QDA + KL+++ +E+ +A K GG + SN L AV+EKA +++ +D++
Sbjct: 8 ANIKHRKAKQDASRGKLFTKFIRELTTAAKLGGGDAASNPRLRAVVEKALSVNMTRDVIN 67
Query: 141 RNIKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I+R A + + E YE YG GGV+++VE +TD + R+V VR G +
Sbjct: 68 RAIQRGAGGEDNDDLKEITYEGYGVGGVAVIVETMTDNLNRTVPDVRHCFSKTDGNLGTN 127
Query: 200 GSVMFKFRRARVVNIKFTDAD-KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
GSV F F + I F D +DQ++D+AL+AGAED+ + DED V+
Sbjct: 128 GSVAFLFTKRG--EITFEDVSLEDQIMDVALEAGAEDI--------EVDEDE----ILVI 173
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELL-PITTIEVD--DEAMELNKELIAKLLELDDV 315
+T +++ D+ L AG+ ++DN ++ P T E+ D+A ++ K +I L +LDDV
Sbjct: 174 TTPESFGDVQDALTAAGL--KSDNAEVVMSPSTKAEITDIDQAKKIMK-MIDMLEDLDDV 230
Query: 316 DAVYTD 321
VYT+
Sbjct: 231 QNVYTN 236
>gi|379748028|ref|YP_005338849.1| hypothetical protein OCU_33090 [Mycobacterium intracellulare ATCC
13950]
gi|443306482|ref|ZP_21036270.1| hypothetical protein W7U_12500 [Mycobacterium sp. H4Y]
gi|378800392|gb|AFC44528.1| hypothetical protein OCU_33090 [Mycobacterium intracellulare ATCC
13950]
gi|442768046|gb|ELR86040.1| hypothetical protein W7U_12500 [Mycobacterium sp. H4Y]
Length = 251
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 127/238 (53%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K +DA++ K ++R+ K + A + GG +P N L ++KAK+ VP D +ER KR
Sbjct: 13 QKAVKDARRGKEFARLIKNIEVAARTGGGDPAGNPTLYDAIQKAKKTSVPNDNIERARKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
+ E G + +YE YG GV++++E LTD R+ VR V GG MADPGSV
Sbjct: 73 GAGEEAGGADYQTIMYEGYGPNGVAVLIECLTDNRNRAAGEVRVAVTRNGGNMADPGSVS 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R VV ++ +D +L LDAGAEDV +D E ++++S +
Sbjct: 133 YLFTRKGVVTLEKNGLTEDDVLTAVLDAGAEDV-------NDLGES-----FEIISEPTD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ T L++AGI +E+ S P ++ VD E +L+ L + DDV V+T+
Sbjct: 181 LVAVRTALQDAGIDYESAEAS-FQPSVSVPVDVEGARKVFKLVDALEDSDDVQNVWTN 237
>gi|331091071|ref|ZP_08339913.1| hypothetical protein HMPREF9477_00556 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330405293|gb|EGG84829.1| hypothetical protein HMPREF9477_00556 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 242
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 127/220 (57%), Gaps = 16/220 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +K DA K K+++ +G+E+ AVK+GGP+P +N+ L V+ KAK ++P D +E
Sbjct: 8 ANIKHKKEKNDAAKGKIFTIIGREIAVAVKEGGPDPANNSRLRDVIAKAKSNNMPNDTIE 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+A+ E V YE YG GV+I+V+ LTD R+ + VR G +
Sbjct: 68 RGIKKAAGDANSVNYESVTYEGYGPSGVAIIVDALTDNKNRTASNVRNAFTKGSGSVGTQ 127
Query: 200 GSVMFKF-RRARVVNIKFT-DADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G V + F ++ +++ K + D D+L+ IALDAGAED E E+D+ Y++
Sbjct: 128 GCVSYMFDKKGQIIVAKEEYETDADELMMIALDAGAEDFAE----EEDS--------YEI 175
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDE 297
++ ++++D+ L EAG+P + + ++P T +E+ DE
Sbjct: 176 LTAPEDFSDVRLALEEAGVPMASAEVT-MIPQTWVELTDE 214
>gi|227891634|ref|ZP_04009439.1| protein of hypothetical function DUF28 [Lactobacillus salivarius
ATCC 11741]
gi|227866550|gb|EEJ73971.1| protein of hypothetical function DUF28 [Lactobacillus salivarius
ATCC 11741]
Length = 253
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 130/241 (53%), Gaps = 18/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K GGP+P N L +++KA+ ++PKD ++R
Sbjct: 21 IQGRKNAQDAKRGKIFQKISREIYMAAKSGGPDPDGNPQLRLIMDKARAANMPKDNIKRA 80
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
I +A+ G + E YE YG GV+I+V LTD R+ +AVR GG + + GSV
Sbjct: 81 IDKATGTGGADYEEITYEGYGPAGVAILVHALTDNRNRTASAVRADFNRNGGNLGETGSV 140
Query: 203 MFKFRRARVVNI--KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
F F R + I + D D+DQ+ + ++AG ED+ ++ +++ +
Sbjct: 141 SFMFDRKGYIAIAREDLDVDEDQMFEDVIEAGGEDL------------QTSDEVFEIYTD 188
Query: 261 SDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ D+ +L++ ++ ++P T+ V + +E + LI +L + DDV VY
Sbjct: 189 PKAFADVRDELQKK---YDLATAELTMVPQNTVPVPADKVEQLQRLIDRLEDEDDVSEVY 245
Query: 320 T 320
T
Sbjct: 246 T 246
>gi|302875045|ref|YP_003843678.1| hypothetical protein Clocel_2171 [Clostridium cellulovorans 743B]
gi|307690336|ref|ZP_07632782.1| hypothetical protein Ccel74_19436 [Clostridium cellulovorans 743B]
gi|302577902|gb|ADL51914.1| protein of unknown function DUF28 [Clostridium cellulovorans 743B]
Length = 245
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 131/239 (54%), Gaps = 16/239 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I +KG DAK+ K+++++GKE++ A K GG NP +N L V+ KAK ++P D + R
Sbjct: 10 IQAKKGKADAKRGKIFTKLGKEIMVAAK-GGSNPDTNAKLRDVIAKAKAANMPADTISRA 68
Query: 143 IKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
+K+ A E + E VYE YG GV+ VV VLTD RS + VR GG + G
Sbjct: 69 VKKGAGELEGVNYEEIVYEGYGPNGVAFVVNVLTDNKNRSASNVRVAFDRNGGNLGASGC 128
Query: 202 VMFKF-RRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
V + F ++ +++ + D D+D+++ AL+AGAEDV D E +++++
Sbjct: 129 VAWMFAKKGQIIIERTADMDEDEIMMTALEAGAEDV------------DAQEEAFEIITA 176
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
++++ + L AG F + + ++P +EVD E + L+ +L + DDV VY
Sbjct: 177 MEDFSTVREALEAAGFEFASAEIT-MIPDNYVEVDLATAETVQRLVDRLEDDDDVQDVY 234
>gi|154249785|ref|YP_001410610.1| hypothetical protein Fnod_1106 [Fervidobacterium nodosum Rt17-B1]
gi|171769425|sp|A7HM20.1|Y1106_FERNB RecName: Full=Probable transcriptional regulatory protein Fnod_1106
gi|154153721|gb|ABS60953.1| protein of unknown function DUF28 [Fervidobacterium nodosum
Rt17-B1]
Length = 252
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 134/242 (55%), Gaps = 19/242 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAK++K+++++ +E+I A ++GG NP +N L AVLEKA+E ++PKD VE
Sbjct: 8 ANIKHRKAAQDAKRSKIFTKLIREIIVAAREGGGNPDTNPRLRAVLEKAREANMPKDTVE 67
Query: 141 RNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R+IK+ + E E + E +YE Y GGV++ + LTD R+ +R ++ GG +A+
Sbjct: 68 RSIKKGTGELEGEKYEEIIYEAYAPGGVALYILALTDNKNRTAQELRHILSKNGGSLAES 127
Query: 200 GSVMFKFRRARVVNIKFTD-ADKDQLLDIALDAGAEDVIE-PPVNEDDTDEDRAERYYKV 257
GSV + F R + I + +D D+ +A+DAGAED+ E PV V
Sbjct: 128 GSVAWIFERKGAIEISASKISDMDEFTLLAIDAGAEDIEEGDPV--------------IV 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
++ T + L + G FE ++ P T++V E +LI L + DDV
Sbjct: 174 YVAPESLTAVKEALAKNG--FEGESKITYKPKNTVKVTGSDAEKVLKLIDALEDNDDVQE 231
Query: 318 VY 319
V+
Sbjct: 232 VF 233
>gi|452125602|ref|ZP_21938185.1| hypothetical protein F783_08789 [Bordetella holmesii F627]
gi|452128965|ref|ZP_21941541.1| hypothetical protein H558_08573 [Bordetella holmesii H558]
gi|451920697|gb|EMD70842.1| hypothetical protein F783_08789 [Bordetella holmesii F627]
gi|451924835|gb|EMD74975.1| hypothetical protein H558_08573 [Bordetella holmesii H558]
Length = 243
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 136/245 (55%), Gaps = 16/245 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RKG QDAK+ KL++++ +E+ A + GG +P SN L +KA + ++PKD
Sbjct: 6 KWANIQHRKGRQDAKRGKLWTKIIREITVAARAGGADPDSNPRLRLAWDKATDANMPKDN 65
Query: 139 VERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
++R I+R + A E+V YE YG GG +++V+ +TD TR+VA VR GG +
Sbjct: 66 IQRAIQRGAGGADGADYEEVRYEGYGVGGAAVIVDCMTDNRTRTVAEVRHAFTKNGGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV F F+ + + +D+++++AL+AGAEDV+ TDE E +V
Sbjct: 126 QEGSVAFMFKHCGQF-LFAPGSSEDKVMEVALEAGAEDVL--------TDE---EGGIEV 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEV-DDEAMELNKELIAKLLELDDVD 316
V +Y + AG+ E D G + + E+ D+A+++ K L+ L LDDV
Sbjct: 174 VCAPADYAALRQAFDTAGLKAEVD-GIIMKALNETELTGDDAIKMQK-LLDVLEGLDDVQ 231
Query: 317 AVYTD 321
VYT+
Sbjct: 232 EVYTN 236
>gi|116333809|ref|YP_795336.1| hypothetical protein LVIS_1199 [Lactobacillus brevis ATCC 367]
gi|122269504|sp|Q03R67.1|Y1199_LACBA RecName: Full=Probable transcriptional regulatory protein LVIS_1199
gi|116099156|gb|ABJ64305.1| hypothetical protein LVIS_1199 [Lactobacillus brevis ATCC 367]
Length = 245
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 127/239 (53%), Gaps = 15/239 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +++ A K GGP+P N L ++KA+ ++PK+ ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKISRDLYQAAKAGGPDPDGNPQLRLEMDKARAANMPKENIKRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ +AS G F E YE YG G +I+V LTD R+ AA+R GG + GSV
Sbjct: 70 LDKASGVGGAKFEEITYEGYGPAGTAIMVAALTDNKNRTAAAIRSAFTHHGGSLGAAGSV 129
Query: 203 MFKFRRARVVNI--KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R + I + D D+D +L ALDAGA+D+ +T +D +K+ +
Sbjct: 130 SYMFDRKGYIVILREDLDTDEDTMLMDALDAGADDM--------ETTDDA----FKIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ T + L+E G +T + + P T EV + + LI +L + DDV +Y
Sbjct: 178 PSSVTAVRDALQEKGYSLDTAE-ARMFPQNTTEVPEAKASQYQGLIDELEDNDDVSDIY 235
>gi|423718020|ref|ZP_17692210.1| UPF0082 protein [Bartonella tamiae Th307]
gi|395426453|gb|EJF92580.1| UPF0082 protein [Bartonella tamiae Th307]
Length = 248
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 127/239 (53%), Gaps = 13/239 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++S++ +E+ A K+G P+P N L ++ AK +PKD +ER
Sbjct: 10 IMHRKGRQDAMRSKMFSKLAREITVAAKQGAPDPAMNPRLRLAVQNAKSQSMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+AS E + E YE YG GV+++VE LTD R+ + VR GG + + GSV
Sbjct: 70 IKKASGGDAENYDEVRYEGYGPAGVAVIVEALTDNRNRTASNVRAAFTKSGGALGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R + K D D +++ A++AGAEDV +DE+ + ++ +
Sbjct: 130 GFMFNRVGEIIYKVDAGDNDTVMEAAIEAGAEDV--------QSDEEG----HVIICAFE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ +++ L A E+ + PIT VD+E + LI+ L + DDV VY +
Sbjct: 178 DIGEVSKALETALGEAESIK-TVWKPITGAAVDEEKAQSVLRLISTLEDDDDVQNVYAN 235
>gi|389736008|ref|ZP_10189611.1| YebC/PmpR family DNA-binding regulatory protein [Rhodanobacter sp.
115]
gi|388440078|gb|EIL96498.1| YebC/PmpR family DNA-binding regulatory protein [Rhodanobacter sp.
115]
Length = 239
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 137/251 (54%), Gaps = 17/251 (6%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR S I GRK A+DAK+AK+++++ +E+ A + G +P N L A ++KA ++
Sbjct: 1 MGRGPS-IEGRKNAEDAKRAKVFTKLIREITVATRSGVADPAGNPRLRAAMDKALAANMT 59
Query: 136 KDIVERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGG 194
KD +ER IKR S A ++++ YE YG G++++++ TD TR+VA VR + GG
Sbjct: 60 KDTIERAIKRGSGADGGADMQELRYEGYGPAGIALIIDCFTDNPTRTVADVRHALTRHGG 119
Query: 195 KMADPGSVMFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAE 252
+ GSV F+F R V + +A ++++L+ AL+AGA+DV VNE
Sbjct: 120 NLGTSGSVAFQFTRCGELVFATRGDEAAEEKVLEAALEAGADDV----VNEHGES----- 170
Query: 253 RYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLEL 312
V+ +++ + L AG+ E G + P + V ++A E L+ KL L
Sbjct: 171 ---TVLCAPEDFETVQQALSAAGLESE-HAGVSMRPNNRVAVPEDAQETLATLLEKLDAL 226
Query: 313 DDVDAVYTDQI 323
DDV VY + +
Sbjct: 227 DDVSEVYHNAL 237
>gi|302338524|ref|YP_003803730.1| hypothetical protein Spirs_2014 [Spirochaeta smaragdinae DSM 11293]
gi|301635709|gb|ADK81136.1| protein of unknown function DUF28 [Spirochaeta smaragdinae DSM
11293]
Length = 248
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 135/242 (55%), Gaps = 14/242 (5%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +KGA DAK+ K ++++ KE+ A + GG +P +N L + KAK ++PKD VE
Sbjct: 8 ASIKHKKGAIDAKRGKAFTKIIKEITVAARMGGGDPEANPRLRTAVLKAKSANMPKDNVE 67
Query: 141 RNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+ + + ++E YE YG GGV+I+++ LTD R+ A VR ++ GG + +
Sbjct: 68 RAIKKGTGDLEGVDYVELTYEAYGPGGVAILIDALTDNKNRTAADVRSILTKGGGNLGES 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
G V + F+R ++N ++ + ++AL+AGAEDV E DT E V++
Sbjct: 128 GCVSYLFQRKGIINYSAESYTEEAIFEVALEAGAEDV----STEGDTIE--------VMT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+++ + L+ AG E S+ +P +T+ +DDE LI +L + DDV +V
Sbjct: 176 APEDFEPVLKALQAAGFEEELAEVSK-VPDSTVTLDDEKTRKALRLIERLDDHDDVQSVA 234
Query: 320 TD 321
T+
Sbjct: 235 TN 236
>gi|354808085|ref|ZP_09041527.1| hypothetical protein CRL705_1482 [Lactobacillus curvatus CRL 705]
gi|354513420|gb|EHE85425.1| hypothetical protein CRL705_1482 [Lactobacillus curvatus CRL 705]
Length = 243
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 126/243 (51%), Gaps = 22/243 (9%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A + GGP+P+SN L +++KA+ ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKLSRELFMAARSGGPDPSSNAALRLIMDKARSANMPKDNIKRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
I +A + E YE Y GGV+++V LTD R+ + VR GG M GSV
Sbjct: 70 IDKADGSDGANYDEITYEGYAPGGVAVLVHALTDNKNRTSSDVRVAFTRNGGTMGASGSV 129
Query: 203 MFKFRRARVVNI--KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R + I + D D+DQ+ + L+AGA+D+ T+ED E Y
Sbjct: 130 AYMFDRRGYIAIAREGLDVDEDQMFEDILEAGADDL--------QTEEDVFEIYTDPKEL 181
Query: 261 SDNYTDITTK---LREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ N DI K L A + ++P T VD E E + LI L + DDV
Sbjct: 182 A-NVRDILEKKYTLANAELT--------MIPQNTTPVDPEKAEQFQRLIDALEDNDDVQE 232
Query: 318 VYT 320
VYT
Sbjct: 233 VYT 235
>gi|445062431|ref|ZP_21374822.1| hypothetical protein H263_03411 [Brachyspira hampsonii 30599]
gi|444506222|gb|ELV06593.1| hypothetical protein H263_03411 [Brachyspira hampsonii 30599]
Length = 247
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 135/245 (55%), Gaps = 15/245 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGG-PNPTSNTVLAAVLEKAKELDVPKD 137
+ + I +K A D+KK K++S++ KE+ AVK+GG P+P N L V+ KAK ++P D
Sbjct: 6 KWASIKHKKAANDSKKGKIWSKIAKEITIAVKEGGSPDPDQNARLRMVIVKAKGTNMPND 65
Query: 138 IVERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKM 196
++R IKR + G+ A IE++ YE Y GGV+I+V+V TD R+ A +R + GG +
Sbjct: 66 NIDRAIKRGAGAGEGANIEEMSYEGYAPGGVAIIVDVATDNKNRTAAEIRSIFSKNGGNL 125
Query: 197 ADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
A+ G+V ++F++ VV I ++ L+DI LDAGAED+ ++ E +
Sbjct: 126 AENGAVSWQFKKKAVVIIPAAGNTEESLMDIVLDAGAEDI------------EQDEEVFT 173
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
+ + + I L+ GI E+ + T + +A ++ K +I + DDV
Sbjct: 174 ITGPMEALSSIVDALKAKGIEPESAEIVRVADNTMTIAESDAKKVMK-IIGLFEDHDDVS 232
Query: 317 AVYTD 321
AV T+
Sbjct: 233 AVATN 237
>gi|83647605|ref|YP_436040.1| hypothetical protein HCH_04926 [Hahella chejuensis KCTC 2396]
gi|119372143|sp|Q2SCK9.1|Y4926_HAHCH RecName: Full=Probable transcriptional regulatory protein HCH_04926
gi|83635648|gb|ABC31615.1| uncharacterized conserved protein [Hahella chejuensis KCTC 2396]
Length = 248
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 140/242 (57%), Gaps = 15/242 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK +QDAK+ K+++++ +E+ A K G P N L AV++KA +++ KD +E
Sbjct: 8 ANIKHRKASQDAKRGKIFTKLIREITVAAKNGAL-PEDNPRLRAVIDKALTVNMKKDTIE 66
Query: 141 RNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
+ I+R + G ++ F E YE YG GGV++ VEV+TD R+VA VR GG +
Sbjct: 67 KAIQRGAGGGDDSNFDELTYEGYGPGGVAVYVEVMTDNRNRTVAEVRHAFSKHGGNLGTD 126
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F + V+ + D D+D +++ AL+AGA+DVI N+D + E V +
Sbjct: 127 GSVAYLFSKTGVI-LFAPDVDEDAVMEAALEAGAQDVI---ANDDGSVE--------VQT 174
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+++++ + L AG+ E+ + S ++P T +D E E +LI L +LDDV VY
Sbjct: 175 SAEDFMAVKDALMAAGLTPESADVS-MVPATMAPLDVENGEKVMKLIEMLEDLDDVQNVY 233
Query: 320 TD 321
++
Sbjct: 234 SN 235
>gi|184155017|ref|YP_001843357.1| hypothetical protein LAF_0541 [Lactobacillus fermentum IFO 3956]
gi|260663412|ref|ZP_05864303.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN]
gi|226707713|sp|B2GB45.1|Y541_LACF3 RecName: Full=Probable transcriptional regulatory protein LAF_0541
gi|183226361|dbj|BAG26877.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956]
gi|260552264|gb|EEX25316.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN]
Length = 247
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 128/239 (53%), Gaps = 15/239 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +++ A K G P+P +N L V++KA+ ++PK ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKISRDLYQAAKAGDPDPDNNPQLRLVMDKARAANMPKQNIQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
I +A+ G F E YE YG GGV+++V LTD R+ AA+R GG + GSV
Sbjct: 70 IDKATGAGGANFEEITYEGYGPGGVAVMVFCLTDNKNRTAAAIRSAFTHSGGSLGATGSV 129
Query: 203 MFKFRRARVVNI--KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R ++ I D D+D +L ALDAGA+D+ TD+ +++ +
Sbjct: 130 SYMFNRQGLIEILRDGLDKDEDDMLMDALDAGADDMQA-------TDD-----KFQIFTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
T + L+E G ET + ++P +V + + + LI +L + DDV VY
Sbjct: 178 PSAMTSVRDALQEQGYELETAEVT-MIPENKTKVPADKVGQYQHLIDELEDNDDVADVY 235
>gi|335356400|ref|ZP_08548270.1| hypothetical protein LaniK3_00100 [Lactobacillus animalis KCTC
3501]
Length = 243
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 132/241 (54%), Gaps = 18/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +++ A K GGP+P +N L V+EKA+ ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKISRDLYMAAKSGGPDPDANPQLRLVMEKARAANMPKDNIKRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ +A+ + E YE YG GV+I+V LTD R+ +AVR GG + + GSV
Sbjct: 70 LDKATGANGANYEEITYEGYGPAGVAILVHALTDNRNRTASAVRTDFNRNGGNLGETGSV 129
Query: 203 MFKFRRARVVNI--KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
F F R + I + D D+DQ+ + ++AGAED+ ++ +++ +
Sbjct: 130 SFMFDRKGYIAIVREDLDVDEDQMFEDVIEAGAEDL------------QTSDEVFEIYTE 177
Query: 261 SDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ D+ L+ ++ D+ ++P T+ V ++ +E + LI +L + DDV V+
Sbjct: 178 PKIFEDVRDALQ---AKYDLDSAEITMVPQNTVPVPEDKVEQLQRLIDRLEDEDDVSEVF 234
Query: 320 T 320
T
Sbjct: 235 T 235
>gi|390942737|ref|YP_006406498.1| YebC/PmpR family DNA-binding regulatory protein [Belliella baltica
DSM 15883]
gi|390416165|gb|AFL83743.1| DNA-binding regulatory protein, YebC/PmpR family [Belliella baltica
DSM 15883]
Length = 235
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 136/247 (55%), Gaps = 15/247 (6%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR RK + K +K+++R+GKE++ AVK GGP+P +NT L +++ AK +P
Sbjct: 1 MGRAFEFRKERKFKRWNKMSKVFTRLGKEIVMAVKAGGPDPVNNTKLRTIIQNAKGAAMP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
KD +E IKRAS K ++ + E +YE YG GV++++E TD R+VA +R G
Sbjct: 61 KDRIEAAIKRASNKDEKDYEEVLYEGYGPHGVAVIIETSTDNTNRTVANIRSYFSKSNGS 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
++ GSV F F + V + D ++L +D G D+ D++ E +
Sbjct: 121 LSTSGSVSFMFNKKAVFRFAQGEYDIEELELELIDFGL----------DEIDQNEGEIF- 169
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEV-DDEAMELNKELIAKLLELDD 314
V + +++ ++ L + I + + P TT+E+ +D+ E+NK LI KL + DD
Sbjct: 170 -VYTAFEDFGNMQKALEDKNIEI-INADFQWFPTTTVELPEDQEEEINK-LIEKLEDDDD 226
Query: 315 VDAVYTD 321
+++V+T+
Sbjct: 227 INSVFTN 233
>gi|153875113|ref|ZP_02003050.1| protein containing DUF28 [Beggiatoa sp. PS]
gi|152068422|gb|EDN66949.1| protein containing DUF28 [Beggiatoa sp. PS]
Length = 248
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 140/243 (57%), Gaps = 16/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKGAQDAK+ KL++++ +E+ + + GG SN L A ++ A ++ KD +E
Sbjct: 8 ANIQHRKGAQDAKRGKLFTKLIREITISARMGGGEAASNPRLRAAIDNALVSNMTKDTIE 67
Query: 141 RNIKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IKR A + E + E YE YG GGV+++V+ +TD R+VA +R GG +
Sbjct: 68 RAIKRGAGTQDAENYEEITYEGYGPGGVAVMVDCMTDNRNRTVAEIRHAFSKHGGNLGTD 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F + +++ + +D+D +++IAL+AGA+DV+ N+DD+ V++
Sbjct: 128 GSVAYLFEKVGLLSFP-SGSDEDHIMEIALEAGAQDVVH---NDDDS--------IDVLT 175
Query: 260 TSDNYTDITTKLREAGI-PFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
S+++ + + +A + P + + TT+++D+ + +N L +L +LDDV V
Sbjct: 176 LSEDFYQVKDAMEKAKLMPTQAEITMRASTNTTLDLDNASKMVN--LFNRLEDLDDVQTV 233
Query: 319 YTD 321
Y++
Sbjct: 234 YSN 236
>gi|400536671|ref|ZP_10800205.1| hypothetical protein MCOL_V219846 [Mycobacterium colombiense CECT
3035]
gi|400329684|gb|EJO87183.1| hypothetical protein MCOL_V219846 [Mycobacterium colombiense CECT
3035]
Length = 251
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 127/238 (53%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K +DA++ K ++R+ K + A + GG +P N L ++KAK+ VP D +ER KR
Sbjct: 13 QKAVKDARRGKEFARLIKNIEVAARTGGGDPAGNPTLYDAIQKAKKTSVPNDNIERARKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
+ E G + +YE YG GV++++E LTD R+ VR V GG MADPGSV
Sbjct: 73 GAGEEAGGADYQTIMYEGYGPNGVAVLIECLTDNRNRAAGEVRVAVTRNGGNMADPGSVS 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R VV ++ +D +L LDAGAEDV +D E ++++S +
Sbjct: 133 YLFTRKGVVTLEKNGLTEDDVLTAVLDAGAEDV-------NDLGES-----FEIISEPTD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ T L++AGI +E+ S P ++ VD E +L+ L + DDV V+T+
Sbjct: 181 LVAVRTALQDAGIDYESAEAS-FQPSVSVPVDVEGARKVFKLVDALEDSDDVQNVWTN 237
>gi|401680364|ref|ZP_10812284.1| DNA-binding regulatory protein, YebC/PmpR family [Veillonella sp.
ACP1]
gi|400218689|gb|EJO49564.1| DNA-binding regulatory protein, YebC/PmpR family [Veillonella sp.
ACP1]
Length = 245
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 130/231 (56%), Gaps = 23/231 (9%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +KG DA KAKL +++G+E+ A + GG +PT N L L+KA+E ++PKD
Sbjct: 6 KWANIKHKKGKTDALKAKLATKIGREITVAARMGGADPTGNMRLKLALQKARENNIPKD- 64
Query: 139 VERNIKRASEKG-----QEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCG 193
NI+RA +KG A+ E VYE YG GV++ VEV+TD R+ A VR G
Sbjct: 65 ---NIQRAIDKGVGATDMNAYEEIVYEGYGPAGVAVTVEVMTDNRNRAAADVRHAFSKQG 121
Query: 194 GKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAER 253
G + + G V + F+ V I D+D+L +ALDAGAED+ EDD
Sbjct: 122 GNLGESGCVGWMFKSKGVFVIDKEGHDEDELTLLALDAGAEDLKA----EDDV------- 170
Query: 254 YYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVD-DEAMELNK 303
+++ +T +++ + L +AGI E + ++P TTIE+ D+A+++ K
Sbjct: 171 -FEIYTTPEDFDAVEQALADAGIETEVAKIT-MIPDTTIELSGDDAVKMQK 219
>gi|404446354|ref|ZP_11011468.1| hypothetical protein MVAC_23876 [Mycobacterium vaccae ATCC 25954]
gi|403650528|gb|EJZ05759.1| hypothetical protein MVAC_23876 [Mycobacterium vaccae ATCC 25954]
Length = 251
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 125/238 (52%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K DA++ K+++++ K + A + GG +P N L ++KAK+ VP D +ER KR
Sbjct: 13 KKAVIDARRGKMFAKLIKNIEVAARTGGGDPAGNPTLFDAIQKAKKSSVPNDNIERARKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S E G + YE YG GV+++VE LTD R+ VR + GG MADPGSV
Sbjct: 73 GSGEEAGGADWQNITYEGYGPNGVAVLVECLTDNRNRAAGEVRVAMTRNGGNMADPGSVA 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R V+ ++ +D +L LDAGAEDV D D ++++S +
Sbjct: 133 YLFSRKGVITLEKNGLSEDDVLAAVLDAGAEDV------NDLGDS------FEIISEPTD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ T L++AGI +E+ S P T+ VD E +L+ L + DDV VYT+
Sbjct: 181 LVAVRTALQDAGIDYESAEAS-FQPSVTVPVDLEGARKVLKLVDALEDSDDVQDVYTN 237
>gi|255994537|ref|ZP_05427672.1| glucose-1-phosphate adenylyltransferase [Eubacterium saphenum ATCC
49989]
gi|255993250|gb|EEU03339.1| glucose-1-phosphate adenylyltransferase [Eubacterium saphenum ATCC
49989]
Length = 233
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 140/248 (56%), Gaps = 21/248 (8%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR + IAGRK QD+K++++++R + ++ A KKGG +P N L ++KAK +++P
Sbjct: 1 MGRHGT-IAGRKEKQDSKRSQVFTRHARTIMVAAKKGG-DPEYNFSLKHAIDKAKAINMP 58
Query: 136 KDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGG 194
D +ER IK+ + E + F E +E Y GGV+++V+VLTD R+ +A++ GG
Sbjct: 59 NDNIERAIKKGTGEIDGDHFEEGRFEGYAPGGVAVIVDVLTDNKNRTTSAIKHAFDKNGG 118
Query: 195 KMADPGSVMFKFRRARVVNIKFT-DADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAER 253
+ PG V + F R V+ ++ T D +++++D+A++AGAE+ IE NE
Sbjct: 119 NLGAPGCVSYMFERKGVITVEATDDMGEEEIMDVAVEAGAEN-IESEGNE---------- 167
Query: 254 YYKVVSTSDNYTDITTKLREAGIP-FETDNGSELLP-ITTIEVDDEAMELNKELIAKLLE 311
V+ S+++ + ++++G E D E LP I DDE L K LI L E
Sbjct: 168 -ISVIMNSEDFAAVKEAIQKSGANIIEAD--IEYLPNIYATPTDDEKKALEK-LIDTLEE 223
Query: 312 LDDVDAVY 319
DDV VY
Sbjct: 224 NDDVQKVY 231
>gi|49474670|ref|YP_032712.1| hypothetical protein BQ11790 [Bartonella quintana str. Toulouse]
gi|67462041|sp|Q6FYQ2.1|Y1179_BARQU RecName: Full=Probable transcriptional regulatory protein BQ11790
gi|49240174|emb|CAF26638.1| hypothetical protein BQ11790 [Bartonella quintana str. Toulouse]
Length = 248
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 83/240 (34%), Positives = 126/240 (52%), Gaps = 15/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++S++ +E+ A K+G P+P N L ++ AK +PKD +ER
Sbjct: 10 IMHRKGRQDAMRSKIFSKLAREITVAAKQGAPDPAMNPRLRLAVQNAKAQSMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+AS E + E YE YG GGV+++VE LTD R+ + VR GG + + GSV
Sbjct: 70 IKKASGNDVEHYDEVRYEGYGPGGVAVIVEALTDNRNRTASNVRAAFTKSGGALGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R + K D ++D A++AGAEDV E + + +
Sbjct: 130 SFMFHRIGEIIYKPAAGTADSIMDAAIEAGAEDV------------QSEETGHSITCAFE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELN-KELIAKLLELDDVDAVYTD 321
N ++ +K+ EA + E ++ + TT+ DE L+ LI+ L E DDV VY +
Sbjct: 178 NLGEV-SKMLEAKLG-EAESIKTVWKATTLAPVDEEKALSILRLISTLEEDDDVQNVYAN 235
>gi|365903663|ref|ZP_09441486.1| hypothetical protein LmalK3_09053 [Lactobacillus malefermentans
KCTC 3548]
Length = 245
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 129/239 (53%), Gaps = 15/239 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +++ A K G P+P +N L V+EKA+ ++PKD V+R
Sbjct: 10 IQGRKNAQDAKRGKIFQKISRDLYQAAKAGDPDPANNPQLRLVMEKARSANMPKDNVQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
I +AS G F E YE YG GG +++V LTD R+ AAVR GG + GSV
Sbjct: 70 IDKASGLGGAKFEEITYEGYGPGGTAVMVLALTDNKNRTAAAVRSAFTHHGGALGTDGSV 129
Query: 203 MFKF-RRARVVNIK-FTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R+ +V ++ D D+D +L ALDAGAED+ +T +D +++ +T
Sbjct: 130 SYMFDRKGYIVILRDGLDTDEDTMLMDALDAGAEDM--------NTTDDA----FEIYTT 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ + L+ +T + + P +EV ++ + LI +L DDV VY
Sbjct: 178 PSDMPSVRDALQAKKYDLDTAEVT-MFPENVMEVPEDKTSQYQGLIDELESDDDVSDVY 235
>gi|266620457|ref|ZP_06113392.1| glucose-1-phosphate adenylyltransferase [Clostridium hathewayi DSM
13479]
gi|288867943|gb|EFD00242.1| glucose-1-phosphate adenylyltransferase [Clostridium hathewayi DSM
13479]
Length = 242
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 126/221 (57%), Gaps = 18/221 (8%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +K DA K K+++ +G+E+ AVK+GGP+P +N+ L V+ KAK ++P D ++
Sbjct: 8 ANIKHKKERNDAAKGKVFTVIGREIAVAVKEGGPDPANNSKLRDVIAKAKANNMPNDTID 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+A+ E + YE YG GV+I+V+ LTD R+ A VR GG + P
Sbjct: 68 RGIKKAAGDANAVNYETITYEGYGPNGVAIIVDTLTDNKNRTAANVRSAFTKGGGNVGTP 127
Query: 200 GSV--MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G V MF + +++ + + D D+L+ +ALDAGAED E E+D+ Y+V
Sbjct: 128 GCVSYMFDKKGQIIIDKEECEMDPDELMMMALDAGAEDFSE----EEDS--------YEV 175
Query: 258 VSTSDNYTDITTKLREAGIPF-ETDNGSELLPITTIEVDDE 297
++ ++++ + L AGIP E D ++P T +E+ DE
Sbjct: 176 ITAPEDFSAVREALEAAGIPMVEAD--VTMIPQTWVELTDE 214
>gi|408784879|ref|ZP_11196629.1| hypothetical protein C241_00330 [Rhizobium lupini HPC(L)]
gi|424912441|ref|ZP_18335818.1| DNA-binding regulatory protein, YebC/PmpR family [Rhizobium
leguminosarum bv. viciae USDA 2370]
gi|392848472|gb|EJB00995.1| DNA-binding regulatory protein, YebC/PmpR family [Rhizobium
leguminosarum bv. viciae USDA 2370]
gi|408489218|gb|EKJ97522.1| hypothetical protein C241_00330 [Rhizobium lupini HPC(L)]
Length = 248
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 131/240 (54%), Gaps = 15/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QD+ ++K++S++ +E+ A K G P+P N L ++ AK +PKD +ER
Sbjct: 10 IMHRKGKQDSVRSKMFSKLAREITVAAKTGMPDPNMNPRLRLAIQNAKAQSMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A+ E + E YE YG GGV+++VE LTD R+ + VR + GG + + GSV
Sbjct: 70 IKKAAGAEGENYDEVRYEGYGPGGVAVIVEALTDNRNRTASNVRSIFTKAGGALGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R ++ K D D++++ A++AGA+DV + +E + ++ +
Sbjct: 130 SFSFDRVGEISYKAEVGDADKVMEAAIEAGADDV------------ESSEDGHIIICGFE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELL-PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+++ L G+ E ++ + P T+ VD+E + +LI L + DDV VY++
Sbjct: 178 AMNEVSKALE--GVLGEAESVKAIWKPQNTVPVDEEKAQSLMKLIDNLEDDDDVQNVYSN 235
>gi|421848995|ref|ZP_16281980.1| nucleotidyltransferase [Acetobacter pasteurianus NBRC 101655]
gi|371460264|dbj|GAB27183.1| nucleotidyltransferase [Acetobacter pasteurianus NBRC 101655]
Length = 249
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 130/240 (54%), Gaps = 14/240 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKGAQDAK++K + ++ +E+ A + G P+P +N L A + A+E+++PKD +ER
Sbjct: 10 IMHRKGAQDAKRSKQFGKVIRELTVATRSGLPDPAANPRLRAAISAAREVNMPKDTIERA 69
Query: 143 IKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+AS G + ++E YE YG GV+++VE LTD R+ + VR GG M + S
Sbjct: 70 IKKASGAAGGDDYVEVRYEGYGPAGVAVIVEGLTDNRNRTASDVRAAFSKHGGSMGETNS 129
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
V F FRR V+ + A +D++L+ A++AGAE+V+ E ++V
Sbjct: 130 VSFMFRRLGVITYPASVASEDEMLEAAIEAGAENVVS------------TETSHEVTCEV 177
Query: 262 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+++ + L EA + P T+ +D++ +L+ L + DDV VY +
Sbjct: 178 ESFFTVKDAL-EARFGEPESAKLDWRPENTVTLDEDKARTLFKLLDTLEDHDDVQNVYAN 236
>gi|158520388|ref|YP_001528258.1| hypothetical protein Dole_0371 [Desulfococcus oleovorans Hxd3]
gi|226705841|sp|A8ZT17.1|Y371_DESOH RecName: Full=Probable transcriptional regulatory protein Dole_0371
gi|158509214|gb|ABW66181.1| protein of unknown function DUF28 [Desulfococcus oleovorans Hxd3]
Length = 246
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 135/242 (55%), Gaps = 14/242 (5%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
S I +KGA DAK+ K+++++ KE+ A + GG +P N L + AK+ ++PKD +E
Sbjct: 8 SSIKHKKGAADAKRGKVFTKLIKEITLAARTGGGDPDGNPRLRTAIAAAKDENMPKDNIE 67
Query: 141 RNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+ + + + E YE YG GG +++VE LTD R+V+ +R + G M +
Sbjct: 68 RAIKKGTGDLEGVNYEENTYEGYGPGGAAVLVESLTDNKNRAVSEIRHIFSKHNGNMGEN 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
G V + F + + ++ + A++D L+++A++AGAEDV E DDT ++V++
Sbjct: 128 GCVAWMFDKKGYIEVEKSAAEEDHLMEVAIEAGAEDVRES----DDT--------FEVIT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
++ + L A I + + +LP T +++DD+ E L+ L + +DV VY
Sbjct: 176 EVEDLETVRQALDGASIQYAFAEIT-MLPQTMVDLDDKTSEQMIRLLDALDDCEDVQKVY 234
Query: 320 TD 321
T+
Sbjct: 235 TN 236
>gi|406913038|gb|EKD52525.1| protein of unknown function DUF28 [uncultured bacterium]
Length = 249
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 139/244 (56%), Gaps = 17/244 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
S I +KGA DAK+A+++ ++ KEV A + GG +P +N L +EKAK +PKD +E
Sbjct: 8 STIKHKKGAADAKRAQIFGKIIKEVTVASRLGGGDPNANPRLRLAIEKAKAQSLPKDNIE 67
Query: 141 RNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+ + E E++ E YE YG GV++VV+ +TD R+VA +R GG++A+
Sbjct: 68 RAIKKGTGELEGESYEEISYEGYGQAGVALVVDCMTDNKNRTVAEIRYCFSRKGGRLAET 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
G+V F R ++ + + +++L + ALDAGAED+ +EDD + V +
Sbjct: 128 GAVSRIFERKGIIRVSTSVISEEELFEKALDAGAEDI----GSEDDV--------FVVTT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDE--AMELNKELIAKLLELDDVDA 317
+ + + + L+ AGI + + E +P T+ +DDE A +L LI L + DDV
Sbjct: 176 SFNGFNAVNDALKTAGITIK-EACFEKIPKNTVRIDDEDTAQKL-LGLIEGLEDNDDVQN 233
Query: 318 VYTD 321
V+++
Sbjct: 234 VWSN 237
>gi|258543671|ref|YP_003189104.1| hypothetical protein APA01_26280 [Acetobacter pasteurianus IFO
3283-01]
gi|384043589|ref|YP_005482333.1| nucleotidyltransferase [Acetobacter pasteurianus IFO 3283-12]
gi|384052106|ref|YP_005479169.1| nucleotidyltransferase [Acetobacter pasteurianus IFO 3283-03]
gi|384055215|ref|YP_005488309.1| nucleotidyltransferase [Acetobacter pasteurianus IFO 3283-07]
gi|384058448|ref|YP_005491115.1| nucleotidyltransferase [Acetobacter pasteurianus IFO 3283-22]
gi|384061089|ref|YP_005500217.1| nucleotidyltransferase [Acetobacter pasteurianus IFO 3283-26]
gi|384064381|ref|YP_005485023.1| nucleotidyltransferase [Acetobacter pasteurianus IFO 3283-32]
gi|384120394|ref|YP_005503018.1| nucleotidyltransferase [Acetobacter pasteurianus IFO 3283-01-42C]
gi|421852937|ref|ZP_16285619.1| nucleotidyltransferase [Acetobacter pasteurianus subsp.
pasteurianus LMG 1262 = NBRC 106471]
gi|256634749|dbj|BAI00725.1| nucleotidyltransferase [Acetobacter pasteurianus IFO 3283-01]
gi|256637805|dbj|BAI03774.1| nucleotidyltransferase [Acetobacter pasteurianus IFO 3283-03]
gi|256640859|dbj|BAI06821.1| nucleotidyltransferase [Acetobacter pasteurianus IFO 3283-07]
gi|256643914|dbj|BAI09869.1| nucleotidyltransferase [Acetobacter pasteurianus IFO 3283-22]
gi|256646969|dbj|BAI12917.1| nucleotidyltransferase [Acetobacter pasteurianus IFO 3283-26]
gi|256650022|dbj|BAI15963.1| nucleotidyltransferase [Acetobacter pasteurianus IFO 3283-32]
gi|256653012|dbj|BAI18946.1| nucleotidyltransferase [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256656066|dbj|BAI21993.1| nucleotidyltransferase [Acetobacter pasteurianus IFO 3283-12]
gi|371478788|dbj|GAB30822.1| nucleotidyltransferase [Acetobacter pasteurianus subsp.
pasteurianus LMG 1262 = NBRC 106471]
Length = 249
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 119/221 (53%), Gaps = 36/221 (16%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKGAQDAK++K + ++ +E+ A + G P+P +N L A + A+E+++PKD +ER
Sbjct: 10 IMHRKGAQDAKRSKQFGKVIRELTVATRSGLPDPAANPRLRAAISAAREVNMPKDTIERA 69
Query: 143 IKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+AS G + ++E YE YG GV+++VE LTD R+ + VR GG M + S
Sbjct: 70 IKKASGAAGGDDYVEVRYEGYGPAGVAVIVEGLTDNRNRTASDVRAAFSKHGGSMGETNS 129
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVI------------------------ 237
V F FRR V+ + A +D++L+ A++AGAE+V+
Sbjct: 130 VSFMFRRLGVITYPASVASEDEMLEAAIEAGAENVVSTETSHEVTCEVESFFAVKDALEA 189
Query: 238 ---EP--------PVNEDDTDEDRAERYYKVVSTSDNYTDI 267
EP P N DED+A +K++ T +++ D+
Sbjct: 190 RFGEPESAKLDWRPENTVTLDEDKARTLFKLLDTLEDHDDV 230
>gi|320160777|ref|YP_004174001.1| hypothetical protein ANT_13730 [Anaerolinea thermophila UNI-1]
gi|319994630|dbj|BAJ63401.1| hypothetical protein ANT_13730 [Anaerolinea thermophila UNI-1]
Length = 252
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 139/242 (57%), Gaps = 21/242 (8%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I +KGA DAK+ +L++R+ +E++ A ++GG +P +N L +EKA+ ++PK+ +ER
Sbjct: 10 IKRKKGAMDAKRGQLFTRLTREIVMAAREGGGDPETNFRLRLAVEKARSQNMPKENIERA 69
Query: 143 IKRASEKGQE--AFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
IKR + + +E AF + YE Y GV++++E T+ R+VA +R ++ GG + + G
Sbjct: 70 IKRGTGESKEGNAFEQVFYEGYAPHGVALMIECYTENRNRTVAEIRHLLSRAGGNLGEAG 129
Query: 201 SVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
SV ++F+R + + D D++ ++A++ GAEDV + + DT E V +
Sbjct: 130 SVSWQFKRMAYFALSASKVDFDRVFEVAVENGAEDVTQ----DGDTIE--------VFAP 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVD---DEAMELNKELIAKLLELDDVDA 317
+N+ ++ R A + E +EL I T EV+ +E +++ + I + ELDDV
Sbjct: 178 VENFKVLSDAFRNAKMELEE---AELRMIPTNEVELGVEETLQVLR-TIDTIEELDDVQN 233
Query: 318 VY 319
VY
Sbjct: 234 VY 235
>gi|54025672|ref|YP_119914.1| hypothetical protein nfa37020 [Nocardia farcinica IFM 10152]
gi|60390874|sp|Q5YTE1.1|Y3702_NOCFA RecName: Full=Probable transcriptional regulatory protein NFA_37020
gi|54017180|dbj|BAD58550.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length = 251
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 127/238 (53%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++++ K + A + GG +P N L ++KAK+ VP D +ER KR
Sbjct: 13 KKAAIDAKRGKLFAKLIKNIEVAARTGGGDPEGNPTLYDAIQKAKKSSVPNDNIERARKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
+ E G + +YE YG GV++++E LTD R+ VR + GG MADPGSV
Sbjct: 73 GAGEEAGGADWQTIMYEGYGPNGVAVLIECLTDNRNRAAGEVRVAMTRNGGNMADPGSVA 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R +V ++ +D +L LDAGAE+V +D E ++++S +
Sbjct: 133 YLFHRKGIVTLEKNGLSEDDVLMAVLDAGAEEV-------NDLGES-----FEIISEPGD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ + L+ AGI +E+ S P ++ VD E +LI L + DDV VYT+
Sbjct: 181 LVAVRSALQSAGIDYESAE-SGFQPSVSVAVDAEGARKVFKLIDALEDSDDVQNVYTN 237
>gi|359728331|ref|ZP_09267027.1| hypothetical protein Lwei2_16019 [Leptospira weilii str.
2006001855]
gi|417778541|ref|ZP_12426346.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira weilii
str. 2006001853]
gi|410781334|gb|EKR65908.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira weilii
str. 2006001853]
Length = 249
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 134/237 (56%), Gaps = 13/237 (5%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A D+K+ +++R+GKE+ A K GG +P N L + KAK +++PKD +ER IK+
Sbjct: 13 KKDAIDSKRGAIFTRVGKEITVAAKMGGGDPEGNPRLRLAILKAKSVNMPKDNIERAIKK 72
Query: 146 ASEKGQEAFIEK-VYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMF 204
+ + E+ +YE +G GG++I+V +TDK +R+ ++ ++ GG +A GSV
Sbjct: 73 GTGDLEGVVYEECLYECFGSGGIAIMVSAVTDKKSRTTPEIKSILTKLGGSLATSGSVSR 132
Query: 205 KFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNY 264
F + V+ ++ + +D+L+D+A+ AGAEDVI NE + Y+V++T D+Y
Sbjct: 133 LFEKKGVIVLESSQIGEDELVDLAVGAGAEDVI----NEGEV--------YRVITTPDDY 180
Query: 265 TDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ L E G+ E + +++ D E E +LI +L DDV +V ++
Sbjct: 181 ESVLQALNEKGLKSEESEIRYIALVSSEIADKEVAEKVMKLIEQLDGHDDVTSVTSN 237
>gi|398955930|ref|ZP_10676677.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM33]
gi|398150396|gb|EJM38989.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM33]
Length = 248
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 132/243 (54%), Gaps = 16/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK QDAK+ K++++ +E+ A ++GG +P SN L L+KA ++ +DI++
Sbjct: 8 ANIKHRKERQDAKRGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGANMSRDIID 67
Query: 141 RNIKRASEKGQ-EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I R + + +E YE YG GGV+++VE +TD R+ AAVR CGG +
Sbjct: 68 RAIARGTGAADTDDVVELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFSKCGGNLGTD 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F R ++ D+D L++ A++A A+DV+ NED + V +
Sbjct: 128 GSVAYLFERKGQISFA-AGVDEDALMEAAMEADADDVV---TNEDGS--------IDVFT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+ + + L AG F+ D+ +LP T+ E+D E E +LI L +LDDV V
Sbjct: 176 SFAGFYSVRNALEAAG--FKGDDAEIVMLPTTSAELDLEGAEKVLKLIDMLEDLDDVQNV 233
Query: 319 YTD 321
Y++
Sbjct: 234 YSN 236
>gi|409399637|ref|ZP_11249907.1| hypothetical protein MXAZACID_02855 [Acidocella sp. MX-AZ02]
gi|409131256|gb|EKN00968.1| hypothetical protein MXAZACID_02855 [Acidocella sp. MX-AZ02]
Length = 249
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 132/245 (53%), Gaps = 16/245 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ I RKGAQDAK+A++Y+++ +E+ A K+G P+P +N L A + A + ++ +D
Sbjct: 6 HAKNIMHRKGAQDAKRARIYAKLIREITVAAKEGLPDPAANPRLRAGIAAALKQNMTRDA 65
Query: 139 VERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
++R IK+AS G E V YE YG GV+I++E LTD R+ + VR GG +
Sbjct: 66 IDRAIKKASGAGGTENYESVRYEGYGPSGVAIIIEALTDNRNRTASVVRAAFNKSGGALG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
+ SV F F R + + A D +L+ A++AGA+DV+ +DED ++V
Sbjct: 126 ETNSVSFMFNRLAAIRYPASAASADAMLEAAIEAGADDVV--------SDEDG----HEV 173
Query: 258 VSTSDNYTDITTKLREA-GIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
+ +N+ + L + G P E G E P T+ +D+E +LI L + DDV
Sbjct: 174 QAAVENFFAVRDALAQTFGDPAEA--GIEWQPNMTVTLDEEKATSVLKLIDTLEDDDDVQ 231
Query: 317 AVYTD 321
VY +
Sbjct: 232 NVYAN 236
>gi|402836917|ref|ZP_10885448.1| DNA-binding regulatory protein, YebC/PmpR family [Mogibacterium sp.
CM50]
gi|402269933|gb|EJU19202.1| DNA-binding regulatory protein, YebC/PmpR family [Mogibacterium sp.
CM50]
Length = 241
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 139/246 (56%), Gaps = 18/246 (7%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR + IAGRK AQDA++A ++++ +++I A K+GG +P N+ L ++KAK + +P
Sbjct: 1 MGRHGT-IAGRKSAQDARRAAMFTKYTRQIIVATKEGG-DPEFNSSLRVAIDKAKAIGMP 58
Query: 136 KDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGG 194
D + R IK+ + E E++ E V+E YG GV+++VE LTD R+ A +R GG
Sbjct: 59 NDNISRAIKKGTGELAGESYEELVFEGYGPSGVAVIVEALTDNKNRTAAFIRSTFDRNGG 118
Query: 195 KMADPGSVMFKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAER 253
+ PG V + F R V+ I D D+D ++ AL+AGAED+I VNED+
Sbjct: 119 NLGTPGCVSYMFSRKGVIVIAKADGLDEDSVMMEALEAGAEDMI---VNEDN-------- 167
Query: 254 YYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEA-MELNKELIAKLLEL 312
++ + + ++ + L+ +G ++ E +P VDDEA ++ +LI L +
Sbjct: 168 -LEIRTEAADFHTVLDALKASGYEI-VESEVEFIPSMESNVDDEASIKALHKLIDTLEDN 225
Query: 313 DDVDAV 318
DDV V
Sbjct: 226 DDVQKV 231
>gi|269838390|ref|YP_003320618.1| hypothetical protein Sthe_2376 [Sphaerobacter thermophilus DSM
20745]
gi|269787653|gb|ACZ39796.1| protein of unknown function DUF28 [Sphaerobacter thermophilus DSM
20745]
Length = 248
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 131/245 (53%), Gaps = 19/245 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
++I +K A D KK +S++ +E+ AV++GGPNP +N L LE+AK +P D +E
Sbjct: 8 AQIKRQKAAADFKKGATFSKIAREIHVAVREGGPNPDANLRLRMALERAKREGMPNDTIE 67
Query: 141 RNIKRASEKGQEA--FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMAD 198
R I +AS G +A + +YE YG GGV+++ LTD R+ + VR G + +
Sbjct: 68 RAIAKASGAGADAENYETVIYEGYGPGGVAVLAVALTDNRNRTASEVRHAFSRHNGTLGE 127
Query: 199 PGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
G V ++F + I D D++ +A+DAGA DV E + E ++
Sbjct: 128 TGCVAWQFETVGQIVISADGVDADEVALLAIDAGATDV------ETENGE--------II 173
Query: 259 STSD--NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
T+D D+T +L+EAG+ + + +P +++VD + +L+ L +LDDV
Sbjct: 174 ITTDPSELGDVTERLKEAGLTIQAAE-IQRVPQASVDVDGSQAQATLKLLEALEDLDDVQ 232
Query: 317 AVYTD 321
AVYT+
Sbjct: 233 AVYTN 237
>gi|340751611|ref|ZP_08688421.1| hypothetical protein FMAG_01184 [Fusobacterium mortiferum ATCC
9817]
gi|229420575|gb|EEO35622.1| hypothetical protein FMAG_01184 [Fusobacterium mortiferum ATCC
9817]
Length = 249
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 133/248 (53%), Gaps = 21/248 (8%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RKGAQD K+AKL+++ GKE+ A K+GG +P N L +EKAK ++PKDI
Sbjct: 6 KWANIQYRKGAQDKKRAKLFTKFGKELTIAAKEGGGDPNFNPRLRLAIEKAKAGNMPKDI 65
Query: 139 VERNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ER IK+ + + + FIE YE YG G + +V+V+TD RS + +R GG +
Sbjct: 66 LERAIKKGTGELEGVDFIEMRYEGYGPVGTAFIVDVVTDNKNRSASELRMTFTRKGGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G+V + F++ V+ +K D D+ + AL+AGAEDV E ED ++V
Sbjct: 126 TDGAVAWMFKKQGVITVKSEGIDADEFMMAALEAGAEDVSE----EDGV--------FEV 173
Query: 258 VSTSDNYTDITTKLREAGIPFETD----NGSELLPITTIEVDDEAMELNKELIAKLLELD 313
++ + + L+ AG +E N + IT ++ + M L + L +LD
Sbjct: 174 ITDYTEFQTVLENLKAAGYNYEEAEIAMNPENKVQITDLDTAKKVMALYEALD----DLD 229
Query: 314 DVDAVYTD 321
DV VY +
Sbjct: 230 DVQEVYAN 237
>gi|222055419|ref|YP_002537781.1| hypothetical protein Geob_2326 [Geobacter daltonii FRC-32]
gi|254801298|sp|B9LZC7.1|Y2326_GEOSF RecName: Full=Probable transcriptional regulatory protein Geob_2326
gi|221564708|gb|ACM20680.1| protein of unknown function DUF28 [Geobacter daltonii FRC-32]
Length = 247
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 140/247 (56%), Gaps = 21/247 (8%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ S I +KGA DAK+ K+++++ KE+ A K GG +P N L ++KAK ++PKD
Sbjct: 6 KWSTIKHKKGAADAKRGKIFTKLIKEITVAAKLGGGDPDGNPRLRTAIDKAKGENMPKDN 65
Query: 139 VERNIKRASEKGQEAFI--EKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKM 196
+ER IK+ + G + + E YE YG GG +++VEV+TD R+V+ VR + C G M
Sbjct: 66 IERAIKKGT-GGMDGVVYEETTYEGYGPGGAAVLVEVMTDNRNRTVSDVRSIFTKCNGNM 124
Query: 197 ADPGSVMFKF-RRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ G V + F ++ +V K D DK L + A++AGAEDV +DED
Sbjct: 125 GEAGCVSWMFDKKGLIVFPKSVDFDK--LFEAAIEAGAEDV---------SDED---EQI 170
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDD 314
+V + N+ ++ L +AG F+ D+ ++P T ++++ + E +L+ ++ + DD
Sbjct: 171 EVTTDPSNFMEVRDALEKAG--FKPDSAEVTMIPQTMVKLEGKQAENMLKLMDRMEDNDD 228
Query: 315 VDAVYTD 321
V VY++
Sbjct: 229 VQNVYSN 235
>gi|451336896|ref|ZP_21907448.1| hypothetical protein C791_3963 [Amycolatopsis azurea DSM 43854]
gi|449420545|gb|EMD26021.1| hypothetical protein C791_3963 [Amycolatopsis azurea DSM 43854]
Length = 249
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 130/238 (54%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K DAK+ KL++R+ K + A + GG +P N L ++KAK+ VP+D +ER KR
Sbjct: 13 KKANLDAKRGKLFARLIKNIEVAGRTGGGDPDGNPTLYDAIQKAKKNSVPQDNIERARKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
+ E G + YE YG GV++++E LTD R+ VR + G +ADPGSV
Sbjct: 73 GAGEEAGGADWQTITYEGYGPNGVAVLIECLTDNKNRAAMEVRTALTRNNGSLADPGSVA 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R VV + DA +D +L LDAGAE+V +D DE+ +++VS + +
Sbjct: 133 YMFNRKGVVIMPKGDAAEDDVLMAVLDAGAEEV-------NDLDEN-----FEIVSEATD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ L+EAG +E+ + + LP ++ +D E + +LI L + DDV VY +
Sbjct: 181 LVPVRKALQEAGFEYESADLT-FLPTVSVPLDVEGAKKVFKLIDALEDCDDVQNVYAN 237
>gi|379007122|ref|YP_005256573.1| hypothetical protein [Sulfobacillus acidophilus DSM 10332]
gi|361053384|gb|AEW04901.1| UPF0082 protein yeeN [Sulfobacillus acidophilus DSM 10332]
Length = 247
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/247 (36%), Positives = 138/247 (55%), Gaps = 24/247 (9%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +K DA+K L+SR+ KE+++A K+GG NP +N L +EKAK ++P +E
Sbjct: 8 ANIKRKKAKVDAQKGTLFSRLTKEIMAAAKRGGGNPDTNFKLRIAIEKAKANNLPAANIE 67
Query: 141 RNIKRASEKGQEA---FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
R I+RA+ GQEA + E VYE YG GG +I +++LTD R+ +R + GG +
Sbjct: 68 RAIRRAT--GQEAGVHYEEAVYEGYGPGGTAIYMDILTDNRNRTAGEIRHIFSRHGGSLG 125
Query: 198 DPGSVMFKFR-RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
+ G V + F + R+V I TD +++LLDIA++AGA+D+ EDD Y
Sbjct: 126 ETGCVAWMFEPKGRLV-ITQTDLTEEELLDIAIEAGADDL----AREDDE--------YV 172
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDD 314
V++ D + + GIP + +EL LP TT+ V+ E EL+ L + DD
Sbjct: 173 VLTAPDVLDLVRQAFEDRGIPVDE---AELVRLPKTTVAVEGREAEQLMELLELLEDHDD 229
Query: 315 VDAVYTD 321
V VY++
Sbjct: 230 VQRVYSN 236
>gi|314938219|ref|ZP_07845519.1| conserved hypothetical protein TIGR01033 [Enterococcus faecium
TX0133a04]
gi|314943114|ref|ZP_07849913.1| conserved hypothetical protein TIGR01033 [Enterococcus faecium
TX0133C]
gi|314949311|ref|ZP_07852654.1| conserved hypothetical protein TIGR01033 [Enterococcus faecium
TX0082]
gi|314952245|ref|ZP_07855260.1| conserved hypothetical protein TIGR01033 [Enterococcus faecium
TX0133A]
gi|314992103|ref|ZP_07857553.1| conserved hypothetical protein TIGR01033 [Enterococcus faecium
TX0133B]
gi|314996285|ref|ZP_07861341.1| conserved hypothetical protein TIGR01033 [Enterococcus faecium
TX0133a01]
gi|389869739|ref|YP_006377162.1| hypothetical protein HMPREF0351_12556 [Enterococcus faecium DO]
gi|424789585|ref|ZP_18216230.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium V689]
gi|424797368|ref|ZP_18222966.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium S447]
gi|424849922|ref|ZP_18274349.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium R501]
gi|424859977|ref|ZP_18283952.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium R499]
gi|424869309|ref|ZP_18293021.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium R497]
gi|424952111|ref|ZP_18367149.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium R496]
gi|424954020|ref|ZP_18368943.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium R494]
gi|424957025|ref|ZP_18371777.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium R446]
gi|424960819|ref|ZP_18375300.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium P1986]
gi|424965084|ref|ZP_18379111.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium P1190]
gi|424967586|ref|ZP_18381279.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium P1140]
gi|424970935|ref|ZP_18384409.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium P1139]
gi|424974718|ref|ZP_18387935.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium P1137]
gi|424977471|ref|ZP_18390482.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium P1123]
gi|424979747|ref|ZP_18392581.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium ERV99]
gi|424985880|ref|ZP_18398337.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium ERV69]
gi|424986864|ref|ZP_18399266.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium ERV38]
gi|424989904|ref|ZP_18402146.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium ERV26]
gi|424995158|ref|ZP_18407055.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium ERV168]
gi|424999149|ref|ZP_18410789.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium ERV165]
gi|425001038|ref|ZP_18412574.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium ERV161]
gi|425004981|ref|ZP_18416264.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium ERV102]
gi|425008910|ref|ZP_18419964.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium ERV1]
gi|425011300|ref|ZP_18422209.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium E422]
gi|425012928|ref|ZP_18423685.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium E417]
gi|425017680|ref|ZP_18428176.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium C621]
gi|425020436|ref|ZP_18430741.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium C497]
gi|425030240|ref|ZP_18435434.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium C1904]
gi|425033022|ref|ZP_18438025.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium 515]
gi|425036366|ref|ZP_18441129.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium 514]
gi|425038378|ref|ZP_18442996.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium 513]
gi|425041979|ref|ZP_18446351.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium 511]
gi|425046807|ref|ZP_18450795.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium 510]
gi|425048036|ref|ZP_18451961.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium 509]
gi|425053668|ref|ZP_18457198.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium 506]
gi|425059181|ref|ZP_18462531.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium 504]
gi|425061478|ref|ZP_18464704.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium 503]
gi|313589529|gb|EFR68374.1| conserved hypothetical protein TIGR01033 [Enterococcus faecium
TX0133a01]
gi|313593317|gb|EFR72162.1| conserved hypothetical protein TIGR01033 [Enterococcus faecium
TX0133B]
gi|313595640|gb|EFR74485.1| conserved hypothetical protein TIGR01033 [Enterococcus faecium
TX0133A]
gi|313598173|gb|EFR77018.1| conserved hypothetical protein TIGR01033 [Enterococcus faecium
TX0133C]
gi|313642415|gb|EFS06995.1| conserved hypothetical protein TIGR01033 [Enterococcus faecium
TX0133a04]
gi|313644317|gb|EFS08897.1| conserved hypothetical protein TIGR01033 [Enterococcus faecium
TX0082]
gi|388534988|gb|AFK60180.1| protein of hypothetical function DUF28 [Enterococcus faecium DO]
gi|402916507|gb|EJX37373.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium R501]
gi|402921215|gb|EJX41674.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium S447]
gi|402921861|gb|EJX42279.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium V689]
gi|402926055|gb|EJX46123.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium R499]
gi|402927718|gb|EJX47653.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium R496]
gi|402935805|gb|EJX55021.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium R497]
gi|402937805|gb|EJX56877.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium R494]
gi|402944657|gb|EJX63055.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium R446]
gi|402944964|gb|EJX63343.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium P1190]
gi|402945756|gb|EJX64087.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium P1986]
gi|402954076|gb|EJX71731.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium P1140]
gi|402955675|gb|EJX73186.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium P1137]
gi|402960428|gb|EJX77572.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium P1139]
gi|402964963|gb|EJX81711.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium ERV69]
gi|402965751|gb|EJX82441.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium P1123]
gi|402968189|gb|EJX84683.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium ERV99]
gi|402975693|gb|EJX91633.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium ERV38]
gi|402978057|gb|EJX93822.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium ERV168]
gi|402980107|gb|EJX95736.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium ERV165]
gi|402980826|gb|EJX96406.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium ERV26]
gi|402987650|gb|EJY02697.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium ERV161]
gi|402988022|gb|EJY03051.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium ERV102]
gi|402991256|gb|EJY06062.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium ERV1]
gi|402997465|gb|EJY11786.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium E422]
gi|403002267|gb|EJY16260.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium E417]
gi|403003819|gb|EJY17674.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium C1904]
gi|403003888|gb|EJY17737.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium C621]
gi|403009242|gb|EJY22701.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium C497]
gi|403011429|gb|EJY24739.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium 515]
gi|403015001|gb|EJY27949.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium 514]
gi|403019625|gb|EJY32212.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium 513]
gi|403023144|gb|EJY35430.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium 510]
gi|403025001|gb|EJY37113.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium 511]
gi|403029328|gb|EJY41089.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium 506]
gi|403031762|gb|EJY43352.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium 509]
gi|403036246|gb|EJY47603.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium 504]
gi|403041226|gb|EJY52254.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium 503]
Length = 251
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 130/241 (53%), Gaps = 17/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K GGP+P+ N L V++KAK ++P D VER
Sbjct: 21 IQGRKNAQDAKRGKVFQKLSREIYMAAKAGGPDPSMNPALRLVVDKAKAANMPNDNVERA 80
Query: 143 IKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+A+ E + E YE YG GGV I+V LTD R+ VR GG + + GS
Sbjct: 81 IKKATSAVDETNYDEITYEGYGPGGVGILVHALTDNRNRTATNVRVAFTRNGGSLGETGS 140
Query: 202 VMFKFRRARVVNIK--FTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
V + F R + I+ D++ + + L+AGAED+ P +++ +
Sbjct: 141 VSYLFDRKGYIAIERDGLTVDEETMFEDVLEAGAEDLQTSP------------EVFEIYT 188
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+++ + +L + + + ++P TTI++++E E + L+ KL + DDV V+
Sbjct: 189 APEDFAAVRDELEKEFTLAQAE--LTMIPQTTIDLNEEQKEQLERLVDKLEDDDDVSEVF 246
Query: 320 T 320
T
Sbjct: 247 T 247
>gi|408791758|ref|ZP_11203368.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira meyeri
serovar Hardjo str. Went 5]
gi|408463168|gb|EKJ86893.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira meyeri
serovar Hardjo str. Went 5]
Length = 247
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 133/239 (55%), Gaps = 17/239 (7%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+KGA DAK+ +++R+ KE+ A K+GG + N L + KAK ++PKD +ER IK+
Sbjct: 13 KKGAIDAKRGAIFTRIAKEISVAAKEGGGDQEGNPRLRLAVTKAKAANMPKDNIERAIKK 72
Query: 146 ASEKGQEAFI--EKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
+ G E + E +YE Y GGV+I+V+VLTDK +R+ ++ ++ GG +A+ G+V
Sbjct: 73 GT-GGLEGMVYEECLYECYALGGVAIMVDVLTDKKSRTTPEIKSILTKLGGSLANAGAVS 131
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
F R + +K ++ L D+AL AGAED+ VN+ Y V++
Sbjct: 132 RLFERKGQITLKADQISEEALFDLALGAGAEDI---QVNDG---------MYTVITAPAE 179
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDD-EAMELNKELIAKLLELDDVDAVYTD 321
Y + + L G+ E ++ + +P+TT+EV+D E E +LI L DDV V ++
Sbjct: 180 YEAVQSALSTKGLNME-ESEIKYIPMTTVEVNDKETAEKVMKLIDNLEANDDVQVVSSN 237
>gi|398873712|ref|ZP_10628964.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM74]
gi|398198557|gb|EJM85512.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM74]
Length = 248
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 132/243 (54%), Gaps = 16/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK QDAK+ K++++ +E+ A ++GG +P SN L L+KA ++ +DI++
Sbjct: 8 ANIKHRKERQDAKRGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGANMSRDIID 67
Query: 141 RNIKRASEKGQ-EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R + R + + +E YE YG GGV+++VE +TD R+ AAVR CGG +
Sbjct: 68 RAVARGTGAADTDDVVELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFSKCGGNLGTD 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F R ++ D+D L++ A++A A+DV+ NED + V +
Sbjct: 128 GSVAYLFERKGQISFA-AGVDEDALMEAAMEADADDVV---TNEDGS--------IDVFT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+ + + L AG F+ D+ +LP T+ E+D E E +LI L +LDDV V
Sbjct: 176 SFSGFYSVRNALEAAG--FKGDDAEIVMLPTTSAELDLEGAEKVLKLIDMLEDLDDVQNV 233
Query: 319 YTD 321
Y++
Sbjct: 234 YSN 236
>gi|81428918|ref|YP_395918.1| hypothetical protein LSA1307 [Lactobacillus sakei subsp. sakei 23K]
gi|119391254|sp|Q38W22.1|Y1307_LACSS RecName: Full=Probable transcriptional regulatory protein LCA_1307
gi|78610560|emb|CAI55611.1| Hypothetical protein LCA_1307 [Lactobacillus sakei subsp. sakei
23K]
Length = 243
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 127/243 (52%), Gaps = 22/243 (9%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A + GGP+P+SN L +++KA+ ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKLSRELFMAARSGGPDPSSNAALRLIMDKARSANMPKDNIKRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
I +A + E YE Y GGV+++V LTD R+ + VR GG M GSV
Sbjct: 70 IDKADGSDGANYDEITYEGYAPGGVAVLVHALTDNKNRTSSDVRVAFTRNGGTMGAAGSV 129
Query: 203 MFKFRRARVVNI--KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R + I + D D+DQ+ + L+AGA+D+ T+ED E Y
Sbjct: 130 AYMFDRRGYIAIAREGLDVDEDQMFEDILEAGADDL--------QTEEDVFEIYTDPKEL 181
Query: 261 SDNYTDITTK---LREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ N DI K L A + ++P T VD E +E + L+ L + DDV
Sbjct: 182 A-NVRDILEKKYTLANAELT--------MIPQNTTPVDPEKVEQFQRLVDALEDNDDVQD 232
Query: 318 VYT 320
VYT
Sbjct: 233 VYT 235
>gi|332298168|ref|YP_004440090.1| hypothetical protein Trebr_1536 [Treponema brennaborense DSM 12168]
gi|332181271|gb|AEE16959.1| UPF0082 protein yeeN [Treponema brennaborense DSM 12168]
Length = 246
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 129/237 (54%), Gaps = 16/237 (6%)
Query: 87 KGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRA 146
KGA DAK+ +L+++ KE+ A + GG +P SN L + KA+ ++PKD +ER IK+
Sbjct: 14 KGAADAKRGQLFTKFIKEISIAARMGGGDPGSNPRLRTAMLKARAANMPKDNIERAIKKG 73
Query: 147 S-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 205
+ E G F EK+YE YG GGV+I+VEVLTD R+ A VR + GG + GSV +
Sbjct: 74 TGELGGAIFEEKLYEGYGPGGVAILVEVLTDNNNRAAANVRNIFSKTGGNLGATGSVAYM 133
Query: 206 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 265
F R V+ +D++++ AL+AGAED+ V+ED V + +
Sbjct: 134 FNRKGVIEYDAEAVSEDEVMEAALEAGAEDI----VSEDGV--------VTVTTDPSAFE 181
Query: 266 DITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ L+ G +E+ + ++P +D E ++LI +L E DDV VY++
Sbjct: 182 SVLEALQNKG--YESVSAEVAMVPDMYSAIDMETATKVQKLIDRLEEDDDVQNVYSN 236
>gi|153008531|ref|YP_001369746.1| hypothetical protein Oant_1200 [Ochrobactrum anthropi ATCC 49188]
gi|404320500|ref|ZP_10968433.1| hypothetical protein OantC_19998 [Ochrobactrum anthropi CTS-325]
gi|166228915|sp|A6WY63.1|Y1200_OCHA4 RecName: Full=Probable transcriptional regulatory protein Oant_1200
gi|151560419|gb|ABS13917.1| protein of unknown function DUF28 [Ochrobactrum anthropi ATCC
49188]
Length = 248
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 128/239 (53%), Gaps = 13/239 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++S++G+E+ A K+G P+PT N L ++ AK +PKD +ER
Sbjct: 10 IMHRKGRQDAVRSKMFSKLGREITVAAKQGLPDPTMNPRLRLAIQNAKAQSMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A+ E + E YE G GGVS++VE LTD R+ + VR GG + + GSV
Sbjct: 70 IKKAAGNDGENYDEVRYEGRGPGGVSVIVEALTDNRNRTASNVRAAFTKSGGALGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R + K + D D++++ A++AGA+DV E + ++ +
Sbjct: 130 SFMFDRVGEIVYKSSVGDADKVMEAAIEAGADDV------------QSGEEEHVIICAFE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ +++ L EA + + P T E+D+E +L+ L + DDV VYT+
Sbjct: 178 DIGEVSKAL-EAALGEAESIKTIWKPQTNTELDEEKARSVLKLLNVLEDDDDVQNVYTN 235
>gi|419718294|ref|ZP_14245618.1| DNA-binding regulatory protein, YebC/PmpR family
[Lachnoanaerobaculum saburreum F0468]
gi|383305510|gb|EIC96871.1| DNA-binding regulatory protein, YebC/PmpR family
[Lachnoanaerobaculum saburreum F0468]
Length = 242
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 131/245 (53%), Gaps = 17/245 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +K DA K K+++ +G+E+ AVK+GGP+P +N+ L V+ KAK +VP D
Sbjct: 6 KFANIKHKKEKNDAAKGKIFTVIGREIAVAVKEGGPDPNNNSKLRDVIAKAKANNVPNDT 65
Query: 139 VERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ER IK+A+ + + + YE YG GV+I+VE LTD R+ A VR GG +
Sbjct: 66 IERGIKKAAGDINSVNYEQNTYEGYGPNGVAIIVETLTDNKNRTAANVRAAFTKGGGNIG 125
Query: 198 DPGSVMFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
G V F F + +++ + D D D+L+ ALD GAED E E+D+ Y
Sbjct: 126 TQGCVSFMFDKKGQIIIDKEECDMDSDELMMTALDLGAEDFSE----EEDS--------Y 173
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLEL-DD 314
++++ DN++ + L + GIP D ++P + + DE I LL+ DD
Sbjct: 174 EILTDPDNFSVVREGLEKLGIPM-ADAEITMIPQNWVTLSDEEDIKKMNRILDLLDAEDD 232
Query: 315 VDAVY 319
V VY
Sbjct: 233 VQNVY 237
>gi|284048865|ref|YP_003399204.1| hypothetical protein Acfer_1531 [Acidaminococcus fermentans DSM
20731]
gi|283953086|gb|ADB47889.1| protein of unknown function DUF28 [Acidaminococcus fermentans DSM
20731]
Length = 243
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/247 (36%), Positives = 132/247 (53%), Gaps = 24/247 (9%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +KG DA + K+ +++G+E+ AV+ GGP+PT N L L KAK ++PKD
Sbjct: 8 ANIKFKKGKADALRGKITTKIGREITIAVRMGGPDPTGNMRLKLALSKAKANNIPKD--- 64
Query: 141 RNIKRASEKGQEA-----FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
NIKRA KGQ A + + YE YG GV+I+V LTD R+ A VR V GG
Sbjct: 65 -NIKRAIAKGQGATEGSNYEQITYEGYGPAGVAIMVSALTDNRNRTAADVRHVFSK-GGN 122
Query: 196 MADPGSVMFKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERY 254
M + G V + F+ V ++ A +D++L++ALDAGAED+ +T +D
Sbjct: 123 MGESGCVGWMFKNKGVFTVEKEGAPSEDEVLEVALDAGAEDM--------ETTDDA---- 170
Query: 255 YKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDD 314
Y + ++ ++Y + L + I S L+P TI V E E + +I ELDD
Sbjct: 171 YVITTSPEDYDAVEKALADHNIEVAMSELS-LIPDNTIAVAGEDAEKVQNMIDAFNELDD 229
Query: 315 VDAVYTD 321
V VYT+
Sbjct: 230 VQDVYTN 236
>gi|150397839|ref|YP_001328306.1| hypothetical protein Smed_2641 [Sinorhizobium medicae WSM419]
gi|166228418|sp|A6UCU1.1|Y2641_SINMW RecName: Full=Probable transcriptional regulatory protein Smed_2641
gi|150029354|gb|ABR61471.1| protein of unknown function DUF28 [Sinorhizobium medicae WSM419]
Length = 248
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 129/239 (53%), Gaps = 13/239 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++S++ +E+ A K G P+P N L ++ AK +PKD +ER
Sbjct: 10 IMHRKGRQDAVRSKMFSKLAREITVAAKAGLPDPAMNPRLRLAIQNAKAQSMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+K+A+ E + E YE YG GV+++VE LTD R+ + VR + GG + + GSV
Sbjct: 70 VKKAAGGDAETYEEVRYEGYGPAGVAVIVEALTDNRNRTASNVRSIFTKAGGALGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R + K + D D +++ A++AGA+DV +TDE+ + + +
Sbjct: 130 SFSFDRVGEITYKLSVGDADTVMEAAIEAGADDV--------ETDEEG----HTITCGFE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ +++ L A ET + P T+ VD+E + +LI L + DDV VY++
Sbjct: 178 DIGEVSKALEGALGEAETVK-AVWKPQNTVPVDEEKAQSLMKLIDNLEDDDDVQNVYSN 235
>gi|70732091|ref|YP_261847.1| hypothetical protein PFL_4766 [Pseudomonas protegens Pf-5]
gi|119372135|sp|Q4K7D6.1|Y4766_PSEF5 RecName: Full=Probable transcriptional regulatory protein PFL_4766
gi|68346390|gb|AAY93996.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas
protegens Pf-5]
Length = 248
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 130/243 (53%), Gaps = 16/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK QDAK+ K++++ +E+ A ++GG +P SN L L+KA ++ +DI++
Sbjct: 8 ANIKHRKERQDAKRGKIFTKWIRELTVAARQGGGDPNSNPRLRLALDKALGANMSRDIID 67
Query: 141 RNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I R + G + +E YE YG GV+++VE +TD R+ AAVR CGG +
Sbjct: 68 RAIARGTGAAGSDDVVELTYEGYGPNGVAVMVECMTDNRNRTAAAVRHAFSKCGGNLGTD 127
Query: 200 GSVMFKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
GSV + F R I F + D+D L++ A++A A+DV+ NED + V
Sbjct: 128 GSVAYLFERKG--QITFAEGVDEDALMEAAMEADADDVVS---NEDGS--------IDVF 174
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
++ + + L AG D +LP T+ E+D E E +LI L +LDDV V
Sbjct: 175 TSFAGFYGVRNALEAAGFT-AADAEIVMLPTTSAELDLEGAEKVLKLIDMLEDLDDVQNV 233
Query: 319 YTD 321
Y++
Sbjct: 234 YSN 236
>gi|402311569|ref|ZP_10830510.1| DNA-binding regulatory protein, YebC/PmpR family [Lachnospiraceae
bacterium ICM7]
gi|404482378|ref|ZP_11017605.1| YebC/PmpR family DNA-binding regulatory protein [Clostridiales
bacterium OBRC5-5]
gi|400371741|gb|EJP24691.1| DNA-binding regulatory protein, YebC/PmpR family [Lachnospiraceae
bacterium ICM7]
gi|404344539|gb|EJZ70896.1| YebC/PmpR family DNA-binding regulatory protein [Clostridiales
bacterium OBRC5-5]
Length = 242
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 131/243 (53%), Gaps = 17/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +K DA K K+++ +G+E+ AVK+GGP+P +N+ L V+ KAK +VP D +E
Sbjct: 8 ANIKHKKEKNDAAKGKIFTVIGREIAVAVKEGGPDPNNNSRLRDVIAKAKANNVPNDTIE 67
Query: 141 RNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+A+ + + + YE YG GV+I+VE LTD R+ A VR GG + P
Sbjct: 68 RGIKKAAGDVNSVNYEQNTYEGYGPNGVAIIVETLTDNKNRTAANVRAAFTKGGGNIGTP 127
Query: 200 GSVMFKF-RRARV-VNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G V F F +R ++ ++ + D D D+L+ ALD GAED DE E Y++
Sbjct: 128 GCVSFMFDKRGQILIDKEECDMDADELMMAALDLGAEDF---------NDE---EDSYEI 175
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLEL-DDVD 316
++ +N++ + L + G+P + ++P + + DE I LL+ DDV
Sbjct: 176 LTDPENFSAVREGLEKLGVPMANAEVT-MIPQNWVTLSDEEDIKKMNRILDLLDAEDDVQ 234
Query: 317 AVY 319
VY
Sbjct: 235 NVY 237
>gi|69245439|ref|ZP_00603434.1| Protein of unknown function DUF28 [Enterococcus faecium DO]
gi|257879850|ref|ZP_05659503.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
gi|257882576|ref|ZP_05662229.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|257886026|ref|ZP_05665679.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
gi|257891691|ref|ZP_05671344.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
gi|257894166|ref|ZP_05673819.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
gi|260559523|ref|ZP_05831704.1| conserved hypothetical protein [Enterococcus faecium C68]
gi|261206674|ref|ZP_05921372.1| conserved hypothetical protein [Enterococcus faecium TC 6]
gi|289565035|ref|ZP_06445489.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
gi|293553688|ref|ZP_06674312.1| conserved hypothetical protein [Enterococcus faecium E1039]
gi|293563189|ref|ZP_06677645.1| conserved hypothetical protein [Enterococcus faecium E1162]
gi|293570111|ref|ZP_06681191.1| conserved hypothetical protein [Enterococcus faecium E1071]
gi|294614904|ref|ZP_06694795.1| hypothetical protein EfmE1636_0985 [Enterococcus faecium E1636]
gi|294623700|ref|ZP_06702533.1| conserved hypothetical protein [Enterococcus faecium U0317]
gi|383329924|ref|YP_005355808.1| hypothetical protein EFAU004_02610 [Enterococcus faecium Aus0004]
gi|406579484|ref|ZP_11054715.1| hypothetical protein GMD4E_01395 [Enterococcus sp. GMD4E]
gi|406581807|ref|ZP_11056942.1| hypothetical protein GMD3E_01482 [Enterococcus sp. GMD3E]
gi|406584231|ref|ZP_11059266.1| hypothetical protein GMD2E_02122 [Enterococcus sp. GMD2E]
gi|406589698|ref|ZP_11064125.1| hypothetical protein GMD1E_03414 [Enterococcus sp. GMD1E]
gi|410937635|ref|ZP_11369494.1| hypothetical protein GMD5E_A08913 [Enterococcus sp. GMD5E]
gi|415892948|ref|ZP_11550047.1| conserved hypothetical protein [Enterococcus faecium E4453]
gi|416132448|ref|ZP_11597901.1| conserved hypothetical protein [Enterococcus faecium E4452]
gi|427397654|ref|ZP_18890136.1| UPF0082 protein [Enterococcus durans FB129-CNAB-4]
gi|430821488|ref|ZP_19440095.1| hypothetical protein OG9_04991 [Enterococcus faecium E0045]
gi|430824325|ref|ZP_19442889.1| hypothetical protein OGA_05338 [Enterococcus faecium E0120]
gi|430827190|ref|ZP_19445354.1| hypothetical protein OGC_04894 [Enterococcus faecium E0164]
gi|430830004|ref|ZP_19448073.1| hypothetical protein OGE_05088 [Enterococcus faecium E0269]
gi|430832565|ref|ZP_19450608.1| hypothetical protein OGG_05145 [Enterococcus faecium E0333]
gi|430835072|ref|ZP_19453071.1| hypothetical protein OGI_02253 [Enterococcus faecium E0679]
gi|430837164|ref|ZP_19455139.1| hypothetical protein OGK_04821 [Enterococcus faecium E0680]
gi|430839950|ref|ZP_19457886.1| hypothetical protein OGM_02386 [Enterococcus faecium E0688]
gi|430845360|ref|ZP_19463254.1| hypothetical protein OGQ_02616 [Enterococcus faecium E1050]
gi|430847153|ref|ZP_19465000.1| hypothetical protein OGS_01463 [Enterococcus faecium E1133]
gi|430851330|ref|ZP_19469080.1| hypothetical protein OGU_05215 [Enterococcus faecium E1185]
gi|430856270|ref|ZP_19473969.1| hypothetical protein OI1_04833 [Enterococcus faecium E1392]
gi|430859204|ref|ZP_19476819.1| hypothetical protein OI3_04281 [Enterococcus faecium E1552]
gi|430861030|ref|ZP_19478622.1| hypothetical protein OI5_03821 [Enterococcus faecium E1573]
gi|430867731|ref|ZP_19482629.1| hypothetical protein OI7_05132 [Enterococcus faecium E1574]
gi|430906589|ref|ZP_19485024.1| hypothetical protein OI9_04854 [Enterococcus faecium E1575]
gi|430964163|ref|ZP_19487611.1| hypothetical protein OIA_04708 [Enterococcus faecium E1576]
gi|431014808|ref|ZP_19490350.1| hypothetical protein OIC_04961 [Enterococcus faecium E1578]
gi|431216464|ref|ZP_19501215.1| hypothetical protein OIK_04668 [Enterococcus faecium E1620]
gi|431239327|ref|ZP_19503630.1| hypothetical protein OIM_04832 [Enterococcus faecium E1622]
gi|431265350|ref|ZP_19506052.1| hypothetical protein OIO_05210 [Enterococcus faecium E1623]
gi|431312213|ref|ZP_19508863.1| hypothetical protein OIQ_05406 [Enterococcus faecium E1626]
gi|431387259|ref|ZP_19511622.1| hypothetical protein OIS_05007 [Enterococcus faecium E1627]
gi|431449122|ref|ZP_19513963.1| hypothetical protein OIU_05169 [Enterococcus faecium E1630]
gi|431512499|ref|ZP_19515926.1| hypothetical protein OIW_03958 [Enterococcus faecium E1634]
gi|431560979|ref|ZP_19519611.1| hypothetical protein OK3_05519 [Enterococcus faecium E1731]
gi|431668792|ref|ZP_19524154.1| hypothetical protein OK7_04791 [Enterococcus faecium E1904]
gi|431744830|ref|ZP_19533696.1| hypothetical protein OKC_05033 [Enterococcus faecium E2071]
gi|431747450|ref|ZP_19536244.1| hypothetical protein OKE_05044 [Enterococcus faecium E2134]
gi|431749949|ref|ZP_19538679.1| hypothetical protein OKG_02125 [Enterococcus faecium E2297]
gi|431756201|ref|ZP_19544839.1| hypothetical protein OKK_05244 [Enterococcus faecium E2883]
gi|431761113|ref|ZP_19549700.1| hypothetical protein OKQ_05253 [Enterococcus faecium E3346]
gi|431766081|ref|ZP_19554577.1| hypothetical protein OKY_04556 [Enterococcus faecium E4215]
gi|431768631|ref|ZP_19557065.1| hypothetical protein OM1_04677 [Enterococcus faecium E1321]
gi|431777750|ref|ZP_19566001.1| hypothetical protein OM7_05586 [Enterococcus faecium E2560]
gi|431780446|ref|ZP_19568625.1| hypothetical protein OM9_02261 [Enterococcus faecium E4389]
gi|431783152|ref|ZP_19571274.1| hypothetical protein OMA_05155 [Enterococcus faecium E6012]
gi|431784108|ref|ZP_19572153.1| hypothetical protein OMC_03000 [Enterococcus faecium E6045]
gi|447913809|ref|YP_007395221.1| hypothetical protein M7W_2566 [Enterococcus faecium NRRL B-2354]
gi|68195821|gb|EAN10257.1| Protein of unknown function DUF28 [Enterococcus faecium DO]
gi|257814078|gb|EEV42836.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
gi|257818234|gb|EEV45562.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|257821882|gb|EEV49012.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
gi|257828051|gb|EEV54677.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
gi|257830545|gb|EEV57152.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
gi|260074622|gb|EEW62943.1| conserved hypothetical protein [Enterococcus faecium C68]
gi|260079167|gb|EEW66860.1| conserved hypothetical protein [Enterococcus faecium TC 6]
gi|289163242|gb|EFD11088.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
gi|291587483|gb|EFF19367.1| conserved hypothetical protein [Enterococcus faecium E1071]
gi|291592190|gb|EFF23808.1| hypothetical protein EfmE1636_0985 [Enterococcus faecium E1636]
gi|291596915|gb|EFF28133.1| conserved hypothetical protein [Enterococcus faecium U0317]
gi|291602263|gb|EFF32491.1| conserved hypothetical protein [Enterococcus faecium E1039]
gi|291604839|gb|EFF34317.1| conserved hypothetical protein [Enterococcus faecium E1162]
gi|364092986|gb|EHM35301.1| conserved hypothetical protein [Enterococcus faecium E4453]
gi|364093283|gb|EHM35566.1| conserved hypothetical protein [Enterococcus faecium E4452]
gi|378939618|gb|AFC64690.1| hypothetical protein EFAU004_02610 [Enterococcus faecium Aus0004]
gi|404455520|gb|EKA02367.1| hypothetical protein GMD4E_01395 [Enterococcus sp. GMD4E]
gi|404458995|gb|EKA05368.1| hypothetical protein GMD3E_01482 [Enterococcus sp. GMD3E]
gi|404464421|gb|EKA09962.1| hypothetical protein GMD2E_02122 [Enterococcus sp. GMD2E]
gi|404470450|gb|EKA15083.1| hypothetical protein GMD1E_03414 [Enterococcus sp. GMD1E]
gi|410733768|gb|EKQ75690.1| hypothetical protein GMD5E_A08913 [Enterococcus sp. GMD5E]
gi|425721965|gb|EKU84865.1| UPF0082 protein [Enterococcus durans FB129-CNAB-4]
gi|430438404|gb|ELA48838.1| hypothetical protein OG9_04991 [Enterococcus faecium E0045]
gi|430441340|gb|ELA51455.1| hypothetical protein OGA_05338 [Enterococcus faecium E0120]
gi|430444370|gb|ELA54225.1| hypothetical protein OGC_04894 [Enterococcus faecium E0164]
gi|430479322|gb|ELA56578.1| hypothetical protein OGE_05088 [Enterococcus faecium E0269]
gi|430479851|gb|ELA57061.1| hypothetical protein OGG_05145 [Enterococcus faecium E0333]
gi|430484740|gb|ELA61702.1| hypothetical protein OGI_02253 [Enterococcus faecium E0679]
gi|430487594|gb|ELA64314.1| hypothetical protein OGK_04821 [Enterococcus faecium E0680]
gi|430490190|gb|ELA66732.1| hypothetical protein OGM_02386 [Enterococcus faecium E0688]
gi|430495765|gb|ELA71901.1| hypothetical protein OGQ_02616 [Enterococcus faecium E1050]
gi|430534292|gb|ELA74753.1| hypothetical protein OGU_05215 [Enterococcus faecium E1185]
gi|430537826|gb|ELA78141.1| hypothetical protein OGS_01463 [Enterococcus faecium E1133]
gi|430544046|gb|ELA84091.1| hypothetical protein OI3_04281 [Enterococcus faecium E1552]
gi|430545103|gb|ELA85097.1| hypothetical protein OI1_04833 [Enterococcus faecium E1392]
gi|430550118|gb|ELA89927.1| hypothetical protein OI7_05132 [Enterococcus faecium E1574]
gi|430550619|gb|ELA90402.1| hypothetical protein OI5_03821 [Enterococcus faecium E1573]
gi|430554547|gb|ELA94149.1| hypothetical protein OI9_04854 [Enterococcus faecium E1575]
gi|430555224|gb|ELA94768.1| hypothetical protein OIA_04708 [Enterococcus faecium E1576]
gi|430559632|gb|ELA98980.1| hypothetical protein OIC_04961 [Enterococcus faecium E1578]
gi|430569829|gb|ELB08809.1| hypothetical protein OIK_04668 [Enterococcus faecium E1620]
gi|430571934|gb|ELB10806.1| hypothetical protein OIM_04832 [Enterococcus faecium E1622]
gi|430576185|gb|ELB14854.1| hypothetical protein OIO_05210 [Enterococcus faecium E1623]
gi|430579162|gb|ELB17698.1| hypothetical protein OIQ_05406 [Enterococcus faecium E1626]
gi|430580816|gb|ELB19282.1| hypothetical protein OIS_05007 [Enterococcus faecium E1627]
gi|430585514|gb|ELB23799.1| hypothetical protein OIU_05169 [Enterococcus faecium E1630]
gi|430586418|gb|ELB24675.1| hypothetical protein OIW_03958 [Enterococcus faecium E1634]
gi|430589820|gb|ELB27920.1| hypothetical protein OK3_05519 [Enterococcus faecium E1731]
gi|430599958|gb|ELB37640.1| hypothetical protein OK7_04791 [Enterococcus faecium E1904]
gi|430604990|gb|ELB42412.1| hypothetical protein OKC_05033 [Enterococcus faecium E2071]
gi|430606277|gb|ELB43635.1| hypothetical protein OKE_05044 [Enterococcus faecium E2134]
gi|430610900|gb|ELB48030.1| hypothetical protein OKG_02125 [Enterococcus faecium E2297]
gi|430615656|gb|ELB52600.1| hypothetical protein OKK_05244 [Enterococcus faecium E2883]
gi|430622487|gb|ELB59208.1| hypothetical protein OKQ_05253 [Enterococcus faecium E3346]
gi|430627151|gb|ELB63668.1| hypothetical protein OKY_04556 [Enterococcus faecium E4215]
gi|430628853|gb|ELB65283.1| hypothetical protein OM1_04677 [Enterococcus faecium E1321]
gi|430639043|gb|ELB74934.1| hypothetical protein OM7_05586 [Enterococcus faecium E2560]
gi|430639858|gb|ELB75713.1| hypothetical protein OM9_02261 [Enterococcus faecium E4389]
gi|430645825|gb|ELB81327.1| hypothetical protein OMA_05155 [Enterococcus faecium E6012]
gi|430650149|gb|ELB85503.1| hypothetical protein OMC_03000 [Enterococcus faecium E6045]
gi|445189518|gb|AGE31160.1| hypothetical protein M7W_2566 [Enterococcus faecium NRRL B-2354]
Length = 240
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 130/241 (53%), Gaps = 17/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K GGP+P+ N L V++KAK ++P D VER
Sbjct: 10 IQGRKNAQDAKRGKVFQKLSREIYMAAKAGGPDPSMNPALRLVVDKAKAANMPNDNVERA 69
Query: 143 IKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+A+ E + E YE YG GGV I+V LTD R+ VR GG + + GS
Sbjct: 70 IKKATSAVDETNYDEITYEGYGPGGVGILVHALTDNRNRTATNVRVAFTRNGGSLGETGS 129
Query: 202 VMFKFRRARVVNIK--FTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
V + F R + I+ D++ + + L+AGAED+ P +++ +
Sbjct: 130 VSYLFDRKGYIAIERDGLTVDEETMFEDVLEAGAEDLQTSP------------EVFEIYT 177
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+++ + +L + + + ++P TTI++++E E + L+ KL + DDV V+
Sbjct: 178 APEDFAAVRDELEKEFTLAQAE--LTMIPQTTIDLNEEQKEQLERLVDKLEDDDDVSEVF 235
Query: 320 T 320
T
Sbjct: 236 T 236
>gi|409422850|ref|ZP_11259930.1| hypothetical protein PsHYS_12189 [Pseudomonas sp. HYS]
Length = 248
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 134/242 (55%), Gaps = 14/242 (5%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK QDAK+ K++++ +E+ A K+GG +P SN L L+KA ++ +DI++
Sbjct: 8 ANIKHRKERQDAKRGKIFTKWIRELTVAAKQGGGDPASNPRLRLALDKALGANMSRDIID 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R + R + + +E++ YE YG GGV+I+VE +TD R+ AAVR CGG +
Sbjct: 68 RAVARGAGTAEADNVEELSYEGYGPGGVAIMVEAMTDNRNRTAAAVRHAFSKCGGNLGTD 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F R ++ D+D L++ A++A A+DV+ N+D + + V +
Sbjct: 128 GSVAYLFERKGQISFA-AGVDEDALMEAAMEADADDVVS---NDDGS--------FDVFT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ +++ + L EAG D + P T+ E+D + + +LI L +LDDV VY
Sbjct: 176 SFNSFYAVRNALEEAGFK-AADAEIVMQPTTSAELDLDGAQKVLKLIDMLEDLDDVQNVY 234
Query: 320 TD 321
++
Sbjct: 235 SN 236
>gi|403530965|ref|YP_006665494.1| hypothetical protein RM11_1081 [Bartonella quintana RM-11]
gi|403233036|gb|AFR26779.1| hypothetical protein RM11_1081 [Bartonella quintana RM-11]
Length = 248
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/240 (34%), Positives = 126/240 (52%), Gaps = 15/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++S++ +E+ A K+G P+P N L ++ AK +PKD +ER
Sbjct: 10 IMHRKGRQDAMRSKIFSKLAREITVAAKQGAPDPAMNPRLRLAVQNAKAQSMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+AS E + E YE YG GGV+++VE LTD R+ + VR GG + + GSV
Sbjct: 70 IKKASGNDVEHYDEVRYEGYGPGGVAVIVEALTDNRNRTASNVRAAFTKSGGALGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R + K D +++ A++AGAEDV E + + +
Sbjct: 130 SFMFHRIGEIIYKPAAGTADSIMEAAIEAGAEDV------------QSEETGHSITCAFE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELN-KELIAKLLELDDVDAVYTD 321
N ++ +K+ EA + E ++ + TT+ DE L+ LIA L E DDV VY +
Sbjct: 178 NLGEV-SKMLEAKLG-EAESIKTVWKATTLAPVDEEKALSILRLIATLEEDDDVQNVYAN 235
>gi|352518634|ref|YP_004887951.1| hypothetical protein TEH_24600 [Tetragenococcus halophilus NBRC
12172]
gi|348602741|dbj|BAK95787.1| hypothetical protein TEH_24600 [Tetragenococcus halophilus NBRC
12172]
Length = 240
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 100/163 (61%), Gaps = 3/163 (1%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I GRK AQDAKK K++ ++ +E+ A + GGP+P +N+ L V++KAK ++P D VE
Sbjct: 8 NNIQGRKNAQDAKKGKIFQKISREIYMAARNGGPDPDTNSSLRMVMDKAKSANMPNDNVE 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+A+ A E+V YE YG GGV+++VE LTD R+ VR GG + +
Sbjct: 68 RAIKKATSSTDGANYEEVTYEGYGPGGVAVLVETLTDNRNRTATDVRVAFDRNGGSLGET 127
Query: 200 GSVMFKFRRARVVNIKFTDAD--KDQLLDIALDAGAEDVIEPP 240
GSV + F R + I+ + D +D +L+ L+AG ED++ P
Sbjct: 128 GSVSYMFDRKGYIAIERENLDVSEDDMLEKVLEAGGEDLLTSP 170
>gi|127513006|ref|YP_001094203.1| hypothetical protein Shew_2078 [Shewanella loihica PV-4]
gi|126638301|gb|ABO23944.1| protein of unknown function DUF28 [Shewanella loihica PV-4]
Length = 248
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/240 (35%), Positives = 129/240 (53%), Gaps = 14/240 (5%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAK+ KL+++ +E+ A ++GG +P SN L A ++KA ++ +D VE
Sbjct: 8 ANIKHRKAAQDAKRGKLFTKFIRELTVAAREGGSDPDSNPRLRAAIDKALSNNMTRDTVE 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IKR + + +E + YE YG GG +++VE +TD R+V+ VR GG +
Sbjct: 68 RAIKRGAGELDGQVLETIMYEGYGPGGTAVMVETMTDNRNRTVSGVRNAFSKSGGNLGTD 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F + V++ +D+D ++D ALDAGAEDV V DDT D V +
Sbjct: 128 GSVAYLFEKRGVISYA-EGSDEDTIMDAALDAGAEDV----VTNDDTSID-------VYT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
T + + + L AG+ + ++P T E+D E LI L + DDV VY
Sbjct: 176 TPEAFGTVKDALDAAGLD-AVNAEVTMVPSTKAELDAETAPKFLRLIDNLEDHDDVQEVY 234
>gi|340756727|ref|ZP_08693332.1| hypothetical protein FVAG_00243 [Fusobacterium varium ATCC 27725]
gi|251833991|gb|EES62554.1| hypothetical protein FVAG_00243 [Fusobacterium varium ATCC 27725]
Length = 249
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 121/218 (55%), Gaps = 16/218 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKGAQD K+AKL+++ G+E+ A K+GG +P N L +EKAK ++PKDI+E
Sbjct: 8 NNIQHRKGAQDRKRAKLFTKFGRELTIAAKEGGGDPNFNPRLRLAIEKAKAGNMPKDILE 67
Query: 141 RNIKRASE--KGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMAD 198
R IK+ + +G E F E YE YG G + +V+V+TD RS + VR GG +
Sbjct: 68 RAIKKGTGELEGVE-FSEIRYEGYGPAGTAFIVDVVTDNKNRSASEVRMTFTRKGGNLGT 126
Query: 199 PGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
G+V + F++ V+ +K D D+ + AL+AGAEDV E ED ++V+
Sbjct: 127 DGAVAWMFKKQGVITVKSEGIDSDEFMMAALEAGAEDVSE----EDGV--------FEVI 174
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDD 296
+ + + L+EAG +E S + P +E+ D
Sbjct: 175 TNYTEFQTVLENLKEAGYSYEEAEIS-MNPENKVEITD 211
>gi|304321098|ref|YP_003854741.1| hypothetical protein PB2503_07719 [Parvularcula bermudensis
HTCC2503]
gi|303300000|gb|ADM09599.1| hypothetical protein PB2503_07719 [Parvularcula bermudensis
HTCC2503]
Length = 248
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 123/241 (51%), Gaps = 13/241 (5%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKG QDAK++KL+S++ KE+ A K G P+P N L ++ AK +PKD +E
Sbjct: 8 ANIQHRKGRQDAKRSKLFSKLSKEITVAAKMGTPDPEMNPRLRLAVQNAKAQSMPKDNIE 67
Query: 141 RNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
R IK+A + + E YE G GV ++VE LTD R+ + VR GG + + G
Sbjct: 68 RAIKKAESGEGDNYEEIRYEGRGPEGVGVIVEALTDNRNRTASEVRSTFTKNGGSLGETG 127
Query: 201 SVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
SV F F R ++ +D +++ A++AGAEDV + +E + V
Sbjct: 128 SVSFGFDRMGLIQYPVDITSEDGMMEAAIEAGAEDV------------ESSEDGHAVYCA 175
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
++ D++T L ET + P T+ + DE E +L L +LDDV VYT
Sbjct: 176 LEDLNDVSTALEARFGEPETVTPT-WRPQITVPISDEKAETMMKLYEALDDLDDVQNVYT 234
Query: 321 D 321
+
Sbjct: 235 N 235
>gi|325287481|ref|YP_004263271.1| hypothetical protein Celly_2583 [Cellulophaga lytica DSM 7489]
gi|324322935|gb|ADY30400.1| UPF0082 protein yeeN [Cellulophaga lytica DSM 7489]
Length = 237
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/246 (35%), Positives = 132/246 (53%), Gaps = 16/246 (6%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR RK + + +K ++R+GK+++ AVK+GGP+P SN L AV++ AK +++P
Sbjct: 1 MGRAFEFRKARKMKRWSAMSKAFTRIGKDIVMAVKEGGPDPDSNARLRAVIQNAKSVNMP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
KD VER IKRAS+K F E ++E Y G++I+VE TD TR+VA VR C G
Sbjct: 61 KDNVERAIKRASDKSLGDFKEVLFEGYAPHGIAILVETATDNNTRTVANVRSYFNKCNGS 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV F F I D ++L +D GAE+V V++D
Sbjct: 121 LGTSGSVEFMFDHTCNFRIPAEGIDPEELELELIDFGAEEVF---VDDDGI--------- 168
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDE--AMELNKELIAKLLELD 313
+ + +++ + +L GI +G E +P T E+++E E+ K L+ KL E D
Sbjct: 169 LIYAPFESFGALQKELESRGIEI-LSSGFERIPQVTKELENEEHVAEVEK-LLEKLEEDD 226
Query: 314 DVDAVY 319
DV VY
Sbjct: 227 DVQNVY 232
>gi|315651757|ref|ZP_07904762.1| glucose-1-phosphate adenylyltransferase [Lachnoanaerobaculum
saburreum DSM 3986]
gi|315486012|gb|EFU76389.1| glucose-1-phosphate adenylyltransferase [Lachnoanaerobaculum
saburreum DSM 3986]
Length = 253
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 131/245 (53%), Gaps = 17/245 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +K DA K K+++ +G+E+ AVK+GGP+P +N+ L V+ KAK +VP D
Sbjct: 17 KFANIKHKKEKNDAAKGKIFTVIGREIAVAVKEGGPDPNNNSKLRDVIAKAKANNVPNDT 76
Query: 139 VERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ER IK+A+ + + + YE YG GV+I+VE LTD R+ A VR GG +
Sbjct: 77 IERGIKKAAGDINSVNYEQNTYEGYGPNGVAIIVETLTDNKNRTAANVRAAFTKGGGNIG 136
Query: 198 DPGSVMFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
G V F F + +++ + D D D+L+ ALD GAED E E+D+ Y
Sbjct: 137 TQGCVSFMFDKKGQIIIDKEECDMDSDELMMTALDLGAEDFSE----EEDS--------Y 184
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLEL-DD 314
++++ DN++ + L + GIP D ++P + + DE I LL+ DD
Sbjct: 185 EILTDPDNFSVVREGLEKLGIPM-ADAEITMIPQNWVTLSDEEDIKKMNRILDLLDAEDD 243
Query: 315 VDAVY 319
V VY
Sbjct: 244 VQNVY 248
>gi|399527724|ref|ZP_10767411.1| DNA-binding regulatory protein, YebC/PmpR family [Actinomyces sp.
ICM39]
gi|398361660|gb|EJN45402.1| DNA-binding regulatory protein, YebC/PmpR family [Actinomyces sp.
ICM39]
Length = 253
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 134/240 (55%), Gaps = 18/240 (7%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++R+ K + A + GG +P N L ++KAK+ VP D ++R +KR
Sbjct: 13 KKAAIDAKRGKLFARLIKNIEVAARTGGGDPAGNPTLYDAIQKAKKNSVPADNIDRAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S E G + +YE YG GGV+ +VE LTD R+ + VR GG +ADPGSV
Sbjct: 73 GSGAEAGGANYETIMYEGYGPGGVAFLVECLTDNRNRAASDVRLGFTRHGGSLADPGSVA 132
Query: 204 FKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
+ F R +V + D D++ ++ LDAGAE+V ED E + V S
Sbjct: 133 YLFSRRGIVEVPAADGVDEESIMMAVLDAGAEEV-----------EDAGELFI-VESDPK 180
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDE-AMELNKELIAKLLELDDVDAVYTD 321
+ + T L++AGI +++ + + T +E+D E A+++NK LI L + DDV +YT+
Sbjct: 181 DVVAVRTALQDAGIDYDSAE-VQFVASTEVELDLEGALKVNK-LIDALEDSDDVQNIYTN 238
>gi|323136015|ref|ZP_08071098.1| protein of unknown function DUF28 [Methylocystis sp. ATCC 49242]
gi|322399106|gb|EFY01625.1| protein of unknown function DUF28 [Methylocystis sp. ATCC 49242]
Length = 248
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 132/241 (54%), Gaps = 17/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I +KG QDA ++KL+S++ +E+ A K G P+P N L A + AK ++PKD ++R
Sbjct: 10 IMHKKGKQDAIRSKLFSKLAREITVAAKAGLPDPNMNARLRAAVLAAKAENMPKDNIDRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+AS E + E YE Y GGV++++E LTD R+ VR GG +A+ G+V
Sbjct: 70 IKKASGADSENYDEVRYEGYAPGGVAVIIEALTDNRNRTAGEVRSYFTKAGGSLAETGAV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R +V A +D +++ A++AGA+DV TDE ++++++ +
Sbjct: 130 SFMFDRVGLVEFDKKVASEDAMMEAAIEAGADDV-------STTDE-----AHEIITSVE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ D+ L E F + L+ P TI+VDDEA E +L+ L + DDV VY
Sbjct: 178 SLRDVAKALEE---KFGEPRKAALVWRPQNTIKVDDEAGEKILKLVGALEDNDDVQNVYA 234
Query: 321 D 321
+
Sbjct: 235 N 235
>gi|206889587|ref|YP_002249658.1| hypothetical protein THEYE_A1868 [Thermodesulfovibrio yellowstonii
DSM 11347]
gi|226696157|sp|B5YHS2.1|Y1868_THEYD RecName: Full=Probable transcriptional regulatory protein
THEYE_A1868
gi|206741525|gb|ACI20582.1| conserved hypothetical protein [Thermodesulfovibrio yellowstonii
DSM 11347]
Length = 251
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 133/248 (53%), Gaps = 20/248 (8%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ ++I +K DAKK K+++++ KE+ A + GG +P N L +EKA+E+++P D
Sbjct: 6 KWAQIKHKKAQVDAKKGKIFTKLVKEISVAARLGGGDPEKNPRLRVAIEKAREVNMPMD- 64
Query: 139 VERNIKRASEKGQ-----EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCG 193
NIKRA KG + E +YE YG GGV+I++E +TD R+V+ +R ++ G
Sbjct: 65 ---NIKRAIMKGTGELAGTTYEEVIYEGYGPGGVAILIEAMTDNKNRTVSEIRHLLSKHG 121
Query: 194 GKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAER 253
G + + G V + F + + + D+D L+ +AL+AG EDV P E+
Sbjct: 122 GSLGESGCVSWIFEKKGYILVDKKTIDEDTLISVALEAGVEDVKNDPKEEN--------- 172
Query: 254 YYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELD 313
Y+++ + + + T + +AGIP + +LP I ++ E E +L+ L + D
Sbjct: 173 -YEIIVSPEQLNQVKTIIEKAGIPVSFAQVT-MLPKNYISIEGEDAEKMLKLMDALEDHD 230
Query: 314 DVDAVYTD 321
DV VY +
Sbjct: 231 DVQNVYAN 238
>gi|421859767|ref|ZP_16291963.1| uncharacterized conserved protein [Paenibacillus popilliae ATCC
14706]
gi|410830682|dbj|GAC42400.1| uncharacterized conserved protein [Paenibacillus popilliae ATCC
14706]
Length = 237
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 132/246 (53%), Gaps = 16/246 (6%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K ++D +++Y+R G+E+ A K+G PNP SN +L V+E+AK +VP
Sbjct: 1 MGRKWNNIKEKKASKDTNTSRIYARFGREIYVAAKQGEPNPESNQILKFVIERAKTYNVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K I++R I++A E + E YE +G G ++V+ LT+ + R+ + VR GG
Sbjct: 61 KAIIDRAIEKAKGGSDENYDELRYEGFGPNGTMVIVDALTNNVNRTASEVRAAFNKNGGS 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAE--DVIEPPVNEDDTDEDRAER 253
+ GSV + F + V+ ++ A +++L+I ++A + D++E ED A
Sbjct: 121 LGVSGSVTYMFDQTAVIGLEGKTA--EEVLEILMNADLDVRDILE---------EDEAVI 169
Query: 254 YYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELD 313
Y V D + + LREAG T +LP + + + ++ +LI L +LD
Sbjct: 170 IYAV---PDQFHAVQNALREAGTSEFTVAELTMLPQSDVSLPEDVQAQFDKLIDALEDLD 226
Query: 314 DVDAVY 319
DV VY
Sbjct: 227 DVQQVY 232
>gi|88811439|ref|ZP_01126694.1| hypothetical protein NB231_11909 [Nitrococcus mobilis Nb-231]
gi|88791328|gb|EAR22440.1| hypothetical protein NB231_11909 [Nitrococcus mobilis Nb-231]
Length = 247
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 134/242 (55%), Gaps = 14/242 (5%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAK+ K+++++ +E+ A + GGPNP N L +++A +++PKD +E
Sbjct: 8 ANIQHRKKAQDAKRGKIFTKLIREITVAARVGGPNPDLNPRLRLAIDRALSVNMPKDNIE 67
Query: 141 RNIKRASEKGQ-EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IKR + + E++ E +E YG GV+I+ + +TD R+V+ VR GG +
Sbjct: 68 RAIKRGAGTDELESYEEPRFEGYGPAGVAIMADCMTDNRNRTVSEVRFAFSKYGGNLGTD 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
G V + FRR V + +D+D++L++AL+AGAED+ N DD +V+S
Sbjct: 128 GCVAYLFRRQGVF-VFPPHSDEDRILEVALEAGAEDI----ANSDDGS-------VEVLS 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ ++Y + L A + D + P TT+ + E ++I L +LDDV VY
Sbjct: 176 SPEHYDAVKQALELADL-HPADAEITMRPETTVVLGAEEGRKVLKIIEHLEDLDDVQHVY 234
Query: 320 TD 321
T+
Sbjct: 235 TN 236
>gi|210612602|ref|ZP_03289393.1| hypothetical protein CLONEX_01595 [Clostridium nexile DSM 1787]
gi|210151527|gb|EEA82534.1| hypothetical protein CLONEX_01595 [Clostridium nexile DSM 1787]
Length = 243
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 139/244 (56%), Gaps = 18/244 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGG-PNPTSNTVLAAVLEKAKELDVPKDIV 139
+ I +K DA + K+++++G+E+ AVK+GG P+P +N+ L V+ KAK ++P D +
Sbjct: 8 ANIKHKKEKNDAVRGKIFTKIGRELAVAVKEGGGPDPANNSRLRDVIAKAKANNMPNDNI 67
Query: 140 ERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMAD 198
ER+IK+A+ + E V YE YG G +I+V+ LTD R+ + VR G +
Sbjct: 68 ERSIKKAAGDADASNYEHVTYEGYGPNGTAIIVDALTDNKNRTASNVRNAFTKGSGNVGT 127
Query: 199 PGSVMFKF-RRARVVNIK-FTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
PG V F F ++ +++ K + D D L+ ALDAGAED +E E+D+ ++
Sbjct: 128 PGCVSFMFDKKGQIIVAKEECEMDADDLMMTALDAGAEDFVE----EEDS--------FE 175
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLEL-DDV 315
+++ D+++++ L EAGIP + + ++P T +++ DE N + LLE DDV
Sbjct: 176 ILTDPDSFSEVRLTLEEAGIPMASAEVT-MIPQTWVQLTDETDLKNIQKTLDLLEEDDDV 234
Query: 316 DAVY 319
VY
Sbjct: 235 QEVY 238
>gi|429758846|ref|ZP_19291359.1| DNA-binding regulatory protein, YebC/PmpR family [Actinomyces sp.
oral taxon 181 str. F0379]
gi|429173060|gb|EKY14597.1| DNA-binding regulatory protein, YebC/PmpR family [Actinomyces sp.
oral taxon 181 str. F0379]
Length = 253
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 132/240 (55%), Gaps = 18/240 (7%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++R+ K + A + GG +P N L ++KAK+ VP D ++R +KR
Sbjct: 13 KKAAIDAKRGKLFARLIKNIEVAARTGGGDPAGNPTLFDAIQKAKKNSVPADNIDRAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S E G + +YE YG GV+ +VE LTD R+ + VR GG +ADPGSV
Sbjct: 73 GSGAEAGGANYETIMYEGYGPNGVAFLVECLTDNRNRAASDVRLGFTRHGGSLADPGSVA 132
Query: 204 FKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
+ F R V+ + D D+D +++ LDAGAE+V ED E + SD
Sbjct: 133 YLFSRRGVIEVPAADGVDEDSIMEAVLDAGAEEV-----------EDLGEGFVIECEPSD 181
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDE-AMELNKELIAKLLELDDVDAVYTD 321
+ L+EAGI +++ + + T +E+D E A+++NK LI L + DDV +YT+
Sbjct: 182 -VVAVRKALQEAGIDYDSAE-VQFVASTEVELDLEGALKVNK-LIDALEDSDDVQNIYTN 238
>gi|373252603|ref|ZP_09540721.1| hypothetical protein NestF_06800 [Nesterenkonia sp. F]
Length = 252
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 132/240 (55%), Gaps = 19/240 (7%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
RK A DAK+AK+ +R K++ A + GGP+ N L ++KAK+ VP D ++R IKR
Sbjct: 13 RKAAVDAKRAKINARYTKQIEVAARSGGPDTDGNPALETAVQKAKKNSVPNDNIDRAIKR 72
Query: 146 ASEKGQEA--FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
+ +A + E +YEV G G +++VE LTD R+ + VR V GG MADPGSV
Sbjct: 73 GAGLTGDAVEYEEILYEVRGPQGSALMVECLTDNRNRAASEVRTAVNRAGGTMADPGSVA 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F+R +V + +D +L L+AG +DVIE D+T E R E +
Sbjct: 133 YMFQRRGIVTLPKNGMSEDDVLAAVLEAGVDDVIE----NDETFEIRCE--------PQD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKEL-IAKLLE-LDDVDAVYTD 321
+D+ LREAGI + D E+ ++ + VD + K L I +LE +DDV ++T+
Sbjct: 181 LSDVVDALREAGIEHDND---EVAFVSDVSVDLDLAAAKKFLRIYDVLEDVDDVQNIHTN 237
>gi|452946147|gb|EME51647.1| hypothetical protein H074_35719 [Amycolatopsis decaplanina DSM
44594]
Length = 249
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 130/238 (54%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K DAK+ KL++R+ K + A + GG +P N L ++KAK+ VP+D +ER KR
Sbjct: 13 KKANLDAKRGKLFARLIKNIEVAARTGGGDPDGNPTLYDAIQKAKKNSVPQDNIERARKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
+ E G + YE YG GV++++E LTD R+ VR + G +ADPGSV
Sbjct: 73 GAGEEAGGADWQTITYEGYGPNGVAVLIECLTDNKNRAAMEVRTALTRNNGSLADPGSVA 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R VV + DA +D +L LDAGAE+V +D DE+ +++V+ + +
Sbjct: 133 YMFNRKGVVIMPKGDAGEDDVLMAVLDAGAEEV-------NDLDEN-----FEIVAEATD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ L+EAG +E+ + + LP ++ +D E + +LI L + DDV VY +
Sbjct: 181 LVPVRKALQEAGFEYESADLT-FLPSVSVPLDVEGAKKVFKLIDALEDCDDVQNVYAN 237
>gi|187478698|ref|YP_786722.1| hypothetical protein BAV2207 [Bordetella avium 197N]
gi|119372126|sp|Q2KYW0.1|Y2207_BORA1 RecName: Full=Probable transcriptional regulatory protein BAV2207
gi|115423284|emb|CAJ49817.1| conserved hypothetical protein [Bordetella avium 197N]
Length = 243
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 131/244 (53%), Gaps = 14/244 (5%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RKG QDAK+ KL++++ +E+ A + GG +P SN L +KA + ++PKD
Sbjct: 6 KWANIQHRKGRQDAKRGKLWTKIIREITVAARAGGADPDSNPRLRLAWDKATDANMPKDN 65
Query: 139 VERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
V+R I+R + E+V YE YG GG +++V+ +TD TR+VA VR GG +
Sbjct: 66 VQRAIQRGAGGADGDNYEEVRYEGYGIGGAAVIVDCMTDNRTRTVAEVRHAFAKNGGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV F F+ + + +D+++++ALDAGAEDVI TD+ E +V
Sbjct: 126 QEGSVAFMFKHCGQF-LFAPGSSEDKVMEVALDAGAEDVI--------TDD---EGGIEV 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ +Y + AG+ E D T D+A+++ K L+ L LDDV
Sbjct: 174 ICAPADYPALRQAFEAAGLKAEVDAVIMKAQSETELTGDDAIKMQK-LLDALEGLDDVQE 232
Query: 318 VYTD 321
VYT+
Sbjct: 233 VYTN 236
>gi|392416146|ref|YP_006452751.1| DNA-binding regulatory protein, YebC/PmpR family [Mycobacterium
chubuense NBB4]
gi|390615922|gb|AFM17072.1| DNA-binding regulatory protein, YebC/PmpR family [Mycobacterium
chubuense NBB4]
Length = 251
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 126/238 (52%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K DA++ K ++++ K + A + GG +P N L ++KAK+ VP D +ER KR
Sbjct: 13 KKAVIDARRGKNFAKLIKNIEVAARTGGGDPGGNPTLYDAIQKAKKNSVPNDNIERARKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
+ E G + YE YG GV+++VE LTD R+ VR + GG MADPGSV
Sbjct: 73 GAGEEAGGADWQTITYEGYGPNGVAVLVECLTDNRNRAAGEVRVAMTRNGGSMADPGSVS 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R VV ++ D +D +L LDAGAEDV D E ++++S +
Sbjct: 133 YLFSRKGVVTLEKNDLTEDDVLAAVLDAGAEDV-----------NDLGES-FEIISEPTD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ T L++AGI +E+ S P T+ VD +A +L+ L + DDV VYT+
Sbjct: 181 LVAVRTALQDAGIDYESAEAS-FQPSVTVPVDVDAARKVLKLVDALEDSDDVQDVYTN 237
>gi|406037685|ref|ZP_11045049.1| hypothetical protein AparD1_12189 [Acinetobacter parvus DSM 16617 =
CIP 108168]
Length = 249
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 138/241 (57%), Gaps = 22/241 (9%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
RK QDA +AK++++ +E+++A K GG +P SN L AV+EKA +++ +D + R ++R
Sbjct: 13 RKAKQDASRAKVFTKYIREIVTAAKLGGGDPASNPRLRAVIEKALSVNMTRDAINRAVQR 72
Query: 146 -ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMF 204
A + E E YE YG GGV+++VE +TD + R+V VR G + GSV +
Sbjct: 73 GAGGEDNEDLNEVTYEGYGVGGVAVLVETMTDNLNRTVPDVRHCFSKNNGNLGTSGSVAY 132
Query: 205 KFRRARVVNIKFTDAD-KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
F + I F D +D+++D+AL+AGAED+ V+ED V++T ++
Sbjct: 133 LFTKRG--EISFEDVSLEDKIMDVALEAGAEDI---EVSEDG---------ILVITTPES 178
Query: 264 YTDITTKLREAGIPFETDNGSELL-PITTIEVD--DEAMELNKELIAKLLELDDVDAVYT 320
+ D+ L AG+ ++DN ++ P T E+ D+A ++ K +I +LDDV VYT
Sbjct: 179 FGDVQDALNAAGL--KSDNAEVVMSPSTKAEITDIDQAKQIMK-MIDMFEDLDDVQNVYT 235
Query: 321 D 321
+
Sbjct: 236 N 236
>gi|253578409|ref|ZP_04855681.1| hypothetical protein RSAG_00642 [Ruminococcus sp. 5_1_39B_FAA]
gi|251850727|gb|EES78685.1| hypothetical protein RSAG_00642 [Ruminococcus sp. 5_1_39BFAA]
Length = 243
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 125/220 (56%), Gaps = 16/220 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +K DAKK K+++ +G+E++ AVK GGP+P +N+ L V+ KAK ++P D +E
Sbjct: 8 ANIKHKKEKNDAKKGKIFTVIGRELVMAVKAGGPDPNNNSKLRDVIAKAKANNMPNDTIE 67
Query: 141 RNIKRASEKGQEAFIEK-VYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+A+ EK VYE YG GV+I+VE LTD R+ VR G +
Sbjct: 68 RGIKKAAGADSADNYEKAVYEGYGPNGVAIIVETLTDNKNRTAGNVRNAFTKGNGSIGTQ 127
Query: 200 GSV--MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G V MF + +++ + + D D+++ +ALDAGAED E E+D+ Y++
Sbjct: 128 GCVSYMFDQKGQIIIDKEECEMDADEIMMLALDAGAEDFSE----EEDS--------YEI 175
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDE 297
++ D+++ + L +AG+P + ++P T +E+ DE
Sbjct: 176 LTAPDDFSAVREALEKAGLPI-AEAQVAMIPQTYVELTDE 214
>gi|443633728|ref|ZP_21117905.1| hypothetical protein BSI_29820 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|443346522|gb|ELS60582.1| hypothetical protein BSI_29820 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
Length = 258
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 128/245 (52%), Gaps = 12/245 (4%)
Query: 75 CMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDV 134
MGR+ + I +K ++DA +++Y++ G+E+ A K+G P+P SN L VLE+AK V
Sbjct: 19 IMGRKWNNIKEKKASKDANTSRIYAKFGREIYVAAKQGEPDPESNQALKVVLERAKTYSV 78
Query: 135 PKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGG 194
PK+I+ER I++A +E F E YE +G G I+V+ LT+ + R+ VR GG
Sbjct: 79 PKNIIERAIEKAKGGAEENFDELRYEGFGPNGSMIIVDALTNNVNRTAPEVRAAFGKNGG 138
Query: 195 KMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERY 254
M GSV + F V+ ++ AD+ + + D D++E EDD+
Sbjct: 139 NMGVSGSVAYMFDATAVIGVEGKTADEALEILMEADVDVRDILE----EDDS-------- 186
Query: 255 YKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDD 314
V + D + + + AG+ T +L + + + D+A E ++LI L +L+D
Sbjct: 187 VIVYAEPDQFHAVQEAFKNAGVEEFTVAELTMLAQSEVTLPDDAKEQFEKLIDALEDLED 246
Query: 315 VDAVY 319
V VY
Sbjct: 247 VQQVY 251
>gi|254362417|ref|ZP_04978526.1| hypothetical protein MHA_2024 [Mannheimia haemolytica PHL213]
gi|261494086|ref|ZP_05990589.1| dATP pyrophosphohydrolase [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|261496073|ref|ZP_05992483.1| dATP pyrophosphohydrolase [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|452745061|ref|ZP_21944899.1| hypothetical protein F388_08314 [Mannheimia haemolytica serotype 6
str. H23]
gi|153094006|gb|EDN74922.1| hypothetical protein MHA_2024 [Mannheimia haemolytica PHL213]
gi|261308323|gb|EEY09616.1| dATP pyrophosphohydrolase [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261310252|gb|EEY11452.1| dATP pyrophosphohydrolase [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|452086901|gb|EME03286.1| hypothetical protein F388_08314 [Mannheimia haemolytica serotype 6
str. H23]
Length = 246
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 139/241 (57%), Gaps = 17/241 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDA++ K+++++ +E+++A K GG + +SN L A ++KA ++ +D +
Sbjct: 8 ANIKHRKAAQDAQRGKIFTKLIRELVTAAKLGGGDTSSNPRLRAAVDKALSSNMTRDTIN 67
Query: 141 RNIKRASEKGQEAFIE-KVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I+R G + +E K+YE YG GG +++VE L+D R+++ VR CGG +
Sbjct: 68 RAIERGVGGGDDTNMETKIYEGYGPGGTAVMVECLSDNANRTISQVRPSFTKCGGNLGTE 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F + ++ + +AD+D L + A++AGA+D I+P ED + +++ +
Sbjct: 128 GSVGYLFSKKGLILV--ANADEDALTEAAIEAGADD-IQP--QEDGS--------FEIYT 174
Query: 260 TSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
++ + + AG F+ +N ++P TT+E+D E +LI +L + DDV V
Sbjct: 175 AWEDLGSVKDGIEAAG--FKIENAEVTMIPSTTVELDAETAPKLLDLINRLEDCDDVQNV 232
Query: 319 Y 319
Y
Sbjct: 233 Y 233
>gi|421856330|ref|ZP_16288697.1| putative transcriptional regulator [Acinetobacter radioresistens
DSM 6976 = NBRC 102413]
gi|403188269|dbj|GAB74898.1| putative transcriptional regulator [Acinetobacter radioresistens
DSM 6976 = NBRC 102413]
Length = 249
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/246 (34%), Positives = 141/246 (57%), Gaps = 22/246 (8%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK QDA + K++++ +E+++A K GGP+ SN L AV+EKA +++ +D +
Sbjct: 8 ANIKHRKAKQDASRGKVFTKYIREIVTAAKLGGPDAASNPRLRAVVEKALSVNMTRDTIN 67
Query: 141 RNIKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I+R A + + E YE YG GGV+++VE +TD + R+V VR G +
Sbjct: 68 RAIQRGAGGEDNDDLKEITYEGYGTGGVAVLVETMTDNLNRTVPDVRHCFSKTNGNLGTS 127
Query: 200 GSVMFKFRRARVVNIKFTDAD-KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
GSV + F + I F D ++++L++AL+AGAED+ ++ED+ V+
Sbjct: 128 GSVAYLFTKRG--EISFDDLSLEEKILEVALEAGAEDI---EISEDE---------ILVI 173
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELL-PITTIEVD--DEAMELNKELIAKLLELDDV 315
+T +N+ D+ L AG+ ++DN ++ P T E+ D+A ++ K +I L +LDDV
Sbjct: 174 TTPENFGDVQDALSAAGL--KSDNAEVVMSPSTKAEITDIDQAKQIMK-MIDMLEDLDDV 230
Query: 316 DAVYTD 321
VYT+
Sbjct: 231 QNVYTN 236
>gi|403049512|ref|ZP_10903996.1| hypothetical protein SclubSAR_03968 [SAR86 cluster bacterium
SAR86D]
Length = 245
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 139/242 (57%), Gaps = 16/242 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK QDA + K+++++ +E+ A K GGP+P N L L+KA ++PKD ++
Sbjct: 8 ANIKHRKARQDASRGKVWTKVIREITVAAK-GGPDPDDNPRLRLALDKANAANMPKDNIK 66
Query: 141 RNIKRASEKGQEAFIEK-VYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I++ S G +E+ V E YG GGV+I+VE ++D R+V+ VR GG +
Sbjct: 67 RAIEKGSGTGDTGALEEIVLEGYGPGGVAIMVEAMSDNRNRTVSDVRHAFSKFGGNLGTD 126
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F + +++I + +++D +LDIAL+AGA+D+++ E Y+++++
Sbjct: 127 GSVSYLFNKIGIIHIAKSYSEED-ILDIALEAGADDLVDE------------EDYFEIIT 173
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+S + ++ L+E I T+ L T++ VD E E +++ + ELDDV V+
Sbjct: 174 SSSDLENVLKSLKENNIE-NTNAELTLRAETSVSVDQEMSEKVLKIMDFMDELDDVQEVH 232
Query: 320 TD 321
T+
Sbjct: 233 TN 234
>gi|296122800|ref|YP_003630578.1| hypothetical protein Plim_2554 [Planctomyces limnophilus DSM 3776]
gi|296015140|gb|ADG68379.1| protein of unknown function DUF28 [Planctomyces limnophilus DSM
3776]
Length = 248
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 131/239 (54%), Gaps = 18/239 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ IA +KG D K+ KL+ ++ K +I A ++GG +P +N L +++AK+ +P D +E
Sbjct: 8 ANIAHKKGRYDQKRGKLFGKLSKAIIVAAQRGG-DPAANLALRYAIDRAKKSSMPADTIE 66
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+ + + Q E+V YE YG GGV+++ ++LT+ R+ VR + GG +
Sbjct: 67 RAIKKGTGELQADNYEQVLYEGYGPGGVAVLCDILTENRNRTAGEVRRIFDIHGGNLGST 126
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
G V + F R + +K D+D L++IALDAGA DV + V+
Sbjct: 127 GCVAWMFDRRGLYAVKAGVTDEDTLMEIALDAGALDVTADAGG------------FSVIC 174
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+ +T + L +AGIP E+ + +LP T+E+D +E+ + ++A + L+D D +
Sbjct: 175 PPETFTPVGEALEKAGIPMESAEIT-MLPQNTVELD---LEMGRAVLALIDALEDNDDI 229
>gi|375100151|ref|ZP_09746414.1| DNA-binding regulatory protein, YebC/PmpR family [Saccharomonospora
cyanea NA-134]
gi|374660883|gb|EHR60761.1| DNA-binding regulatory protein, YebC/PmpR family [Saccharomonospora
cyanea NA-134]
Length = 249
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 128/238 (53%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++++ K + A + GG +P N L ++KAK+ VP+D +ER KR
Sbjct: 13 KKAALDAKRGKLFAKLIKNIEVAARTGGGDPEGNPTLYDAIQKAKKNSVPQDNIERARKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
+ E G + YE Y GGV++++E LTD R+ + VR + GG +ADPGSV
Sbjct: 73 GAGEEAGGADWQNITYEGYAPGGVAVLIECLTDNKNRAASEVRTALTRNGGSLADPGSVA 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R VV + +D +L LDAGAE+V +D E+ Y+++S + +
Sbjct: 133 YLFNRKGVVIMPKNGLSEDDVLMAVLDAGAEEV-------NDLGEN-----YEIISEAGD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ T L++AG +E+ + LP + +D E LI L + DDV VY++
Sbjct: 181 LVAVRTALQDAGYDYESAD-MNFLPSVNVPLDAENARKVFRLIDALEDCDDVQNVYSN 237
>gi|312880158|ref|ZP_07739958.1| protein of unknown function DUF28 [Aminomonas paucivorans DSM
12260]
gi|310783449|gb|EFQ23847.1| protein of unknown function DUF28 [Aminomonas paucivorans DSM
12260]
Length = 250
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 132/244 (54%), Gaps = 17/244 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAKK Y R+ K VI+A K GG +P +N L +++A+E +VP D +E
Sbjct: 8 ANIKHRKAAQDAKKGAAYQRLTKAVIAAAKAGGGDPNANFRLKVAIDRAREGNVPMDNIE 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+ S + + A ++V YE YG GV+I+VE LTD R+ +R + GG + +
Sbjct: 68 RAIKKGSGEIEGAIYDEVTYEGYGPAGVAIMVETLTDNRNRTAPEMRSLFTKSGGAIGEA 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
G V + F R V+ ++ D++ LL +A +AGA+D + DD + V
Sbjct: 128 GCVAWNFERRGVIRVEGKGIDEEALLGVAAEAGADD-----LQGDDEG-------FDVYC 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEV--DDEAMELNKELIAKLLELDDVDA 317
+ +++ L+ AG P E+ S ++P T+ + DEA +L ++ + E DDV
Sbjct: 176 DPSSLSEVGIALKGAGYPVESMEIS-MVPKNTVSITRKDEASKL-LTMVERFEEHDDVQN 233
Query: 318 VYTD 321
VY +
Sbjct: 234 VYAN 237
>gi|293192648|ref|ZP_06609602.1| protein YebC [Actinomyces odontolyticus F0309]
gi|292820155|gb|EFF79152.1| protein YebC [Actinomyces odontolyticus F0309]
Length = 253
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 134/240 (55%), Gaps = 18/240 (7%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++R+ K + A + GG +P N L ++KAK+ VP D ++R +KR
Sbjct: 13 KKAAIDAKRGKLFARLIKNIEVAARTGGGDPAGNPTLYDAIQKAKKNSVPADNIDRAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S E G + +YE YG GGV+ +VE LTD R+ + VR GG +ADPGSV
Sbjct: 73 GSGAEAGGANYETIMYEGYGPGGVAFLVECLTDNRNRAASDVRLGFTRHGGSLADPGSVS 132
Query: 204 FKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
+ F R +V + D D++ ++ LDAGAE+V ED E + V S
Sbjct: 133 YLFSRRGIVEVPAADGVDEESIMMAVLDAGAEEV-----------EDAGELFI-VESDPK 180
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDE-AMELNKELIAKLLELDDVDAVYTD 321
+ + T L++AGI +++ + + T +E+D E A+++NK LI L + DDV +YT+
Sbjct: 181 DVVAVRTALQDAGIDYDSAE-VQFVASTEVELDLEGALKVNK-LIDALEDSDDVQNIYTN 238
>gi|398931387|ref|ZP_10665160.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM48]
gi|398163669|gb|EJM51822.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM48]
Length = 248
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 132/244 (54%), Gaps = 18/244 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK QDAK+ K++++ +E+ A ++GG +P SN L L+KA ++ +DI++
Sbjct: 8 ANIKHRKERQDAKRGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGANMSRDIID 67
Query: 141 RNIKRASEKGQ-EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R + R + + +E YE YG GGV+++VE +TD R+ AAVR CGG +
Sbjct: 68 RAVARGTGAADTDDVVELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFSKCGGNLGTD 127
Query: 200 GSVMFKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
GSV + F R I F D+D L++ A++A A+DV+ NED + V
Sbjct: 128 GSVAYLFERKG--QISFAQGMDEDALMEAAMEADADDVV---TNEDGS--------IDVF 174
Query: 259 STSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
++ + + L AG F+ D+ +LP T+ E+D E E +LI L +LDDV
Sbjct: 175 TSFAGFYSVRNALEAAG--FKGDDAEIVMLPTTSAELDLEGAEKVLKLIDMLEDLDDVQN 232
Query: 318 VYTD 321
VY++
Sbjct: 233 VYSN 236
>gi|49476139|ref|YP_034180.1| hypothetical protein BH14810 [Bartonella henselae str. Houston-1]
gi|67462042|sp|Q6G5P2.1|Y1481_BARHE RecName: Full=Probable transcriptional regulatory protein BH14810
gi|49238947|emb|CAF28244.1| hypothetical protein BH14810 [Bartonella henselae str. Houston-1]
Length = 248
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 128/240 (53%), Gaps = 15/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++S++ +E+ A K+G P+P N L ++ AK +PKD +ER
Sbjct: 10 IMHRKGRQDAMRSKIFSKLAREITVAAKQGSPDPAMNPRLRLAVQNAKAQSMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+AS E + E YE YG GGV+++VE LTD R+ + +R GG + + GSV
Sbjct: 70 IKKASGSDVENYDEVRYEGYGPGGVAVIVEALTDNRNRTASNIRAAFTKSGGALGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R + K D ++D A++AGAEDV E + ++ T +
Sbjct: 130 SFMFNRIGEIIYKPEAGTTDNIMDAAIEAGAEDV------------QSEETGHHIICTFE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELN-KELIAKLLELDDVDAVYTD 321
+ ++ +K+ EA + E ++ + TT+ DE L+ LI+ L E DDV VY +
Sbjct: 178 DIGEV-SKMLEAKLG-EAESIKTVWKATTLTPVDEEKALSILRLISTLEEDDDVQNVYAN 235
>gi|385676949|ref|ZP_10050877.1| hypothetical protein AATC3_13584 [Amycolatopsis sp. ATCC 39116]
Length = 250
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 128/238 (53%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++R+ K + A + GG +P N L ++KAK+ VP+D +ER KR
Sbjct: 13 KKAALDAKRGKLFARLIKNIEVAARTGGGDPEGNPTLYDAIQKAKKNSVPQDNIERARKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
+ E G + YE YG GV++++E LTD R+ VR + GG +ADPGSV
Sbjct: 73 GAGEEAGGADWQTINYEGYGPNGVAVLIECLTDNRNRAAGEVRTALTRNGGSLADPGSVS 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R VV + D +D +L LDAGAE+V + N +++VS + +
Sbjct: 133 YLFNRKGVVIMPKNDLSEDDVLMAVLDAGAEEVNDLGDN------------FEIVSEATD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
++ L++AG +E+ + + LP ++ +D E + LI L + DDV VY +
Sbjct: 181 LINVRKALQDAGYDYESADPT-FLPSVSVPLDAEGAKKVFRLIDALEDCDDVQNVYAN 237
>gi|408673243|ref|YP_006872991.1| UPF0082 protein yeeN [Emticicia oligotrophica DSM 17448]
gi|387854867|gb|AFK02964.1| UPF0082 protein yeeN [Emticicia oligotrophica DSM 17448]
Length = 239
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 131/251 (52%), Gaps = 16/251 (6%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR RK + + AK ++R+GK++ AVK GGP+P SN+ L A+++ AK ++P
Sbjct: 1 MGRAFEFRKARKMKRWGQMAKTFTRIGKDIAIAVKSGGPDPNSNSRLRAIMQNAKAANMP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K VE IKRAS K QE + E VYE YG GV+I+VE TD R+VA VR CGG
Sbjct: 61 KANVENAIKRASSKDQEDYKEVVYEGYGQHGVAILVECTTDNTNRTVANVRSYFSKCGGS 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKD-QLLDIAL-DAGAEDVIEPPVNEDDTDEDRAER 253
+ G + F F R V I D D + L++ L D GAE+V D + ++
Sbjct: 121 LGTSGMLDFIFDRKSVFKIA-NDGKTDIEELELELIDFGAEEVFL------DEEANQINI 173
Query: 254 YYKVVSTSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLEL 312
Y + + + + E G FE + E +P T ++ DE ++LI KL E
Sbjct: 174 YGEFTA----FGALQKYFEEKG--FELLHADFERIPTDTKQLTDEQAADIEKLIEKLEED 227
Query: 313 DDVDAVYTDQI 323
DDV VY + +
Sbjct: 228 DDVQNVYHNMV 238
>gi|163857411|ref|YP_001631709.1| hypothetical protein Bpet3099 [Bordetella petrii DSM 12804]
gi|226703704|sp|A9ITM2.1|Y3099_BORPD RecName: Full=Probable transcriptional regulatory protein Bpet3099
gi|163261139|emb|CAP43441.1| conserved hypothetical protein [Bordetella petrii]
Length = 243
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 128/243 (52%), Gaps = 14/243 (5%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RKG QDAK+ KL++++ +E+ A + GGP+P SN L +KA + ++PKD
Sbjct: 6 KWANIQHRKGRQDAKRGKLWTKIIREITVAARAGGPDPDSNPRLRMAWDKATDANMPKDN 65
Query: 139 VERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
++R I+R + A E+V YE YG GG +++V+ +TD TR+VA VR GG +
Sbjct: 66 IQRAIQRGAGGADGANYEEVRYEGYGIGGAAVIVDCMTDNRTRTVAEVRHAFAKNGGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV F F+ A+ D +++ AL+AGAEDV TD+ E +V
Sbjct: 126 QEGSVAFMFKHCGQFVFAPGTAE-DVVMEAALEAGAEDVT--------TDD---EGVIEV 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ +Y + AG+ E + G + P E+ E ++L+ L LDDV
Sbjct: 174 ICAPADYAAVRQAFEAAGLKAEVE-GIIMKPQNETELTGEDAVKMQKLLDALEGLDDVQE 232
Query: 318 VYT 320
VYT
Sbjct: 233 VYT 235
>gi|300870812|ref|YP_003785683.1| hypothetical protein BP951000_1193 [Brachyspira pilosicoli 95/1000]
gi|404477299|ref|YP_006708730.1| glucose-1-phosphate adenylyltransferase [Brachyspira pilosicoli
B2904]
gi|431808372|ref|YP_007235270.1| hypothetical protein BPP43_09150 [Brachyspira pilosicoli P43/6/78]
gi|434383385|ref|YP_006705168.1| hypothetical protein WESB_2618 [Brachyspira pilosicoli WesB]
gi|300688511|gb|ADK31182.1| conserved hypothetical protein [Brachyspira pilosicoli 95/1000]
gi|404432034|emb|CCG58080.1| hypothetical protein WESB_2618 [Brachyspira pilosicoli WesB]
gi|404438788|gb|AFR71982.1| glucose-1-phosphate adenylyltransferase [Brachyspira pilosicoli
B2904]
gi|430781731|gb|AGA67015.1| hypothetical protein BPP43_09150 [Brachyspira pilosicoli P43/6/78]
Length = 248
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 135/243 (55%), Gaps = 15/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGG-PNPTSNTVLAAVLEKAKELDVPKDIV 139
+ I +K A D+KK K++S++ KE+ AVK+GG P+P N L V+ KAK ++P D +
Sbjct: 8 ASIKHKKAANDSKKGKIWSKIAKEITIAVKEGGSPDPDQNARLRMVIVKAKGTNMPNDNI 67
Query: 140 ERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMAD 198
+R IKR + G+ A IE++ YE Y GGV+I+V+V TD R+ A +R + GG +A+
Sbjct: 68 DRAIKRGAGAGEGANIEEMSYEGYAPGGVAIIVDVATDNKNRTAAEIRSIFSKNGGNLAE 127
Query: 199 PGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
G+V ++F++ VV I ++ L+DI LDAGAED+ ++ E + +
Sbjct: 128 NGAVSWQFKKKAVVIIPAAGNTEESLMDIVLDAGAEDI------------EQDEEVFTIT 175
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+ + I L+ I E+ + T +++A ++ K +I+ + DDV AV
Sbjct: 176 GPMEALSSIVDALKAKNIEPESAEIVRIADNTMTIAENDAKKVMK-IISLFEDHDDVSAV 234
Query: 319 YTD 321
T+
Sbjct: 235 ATN 237
>gi|227552674|ref|ZP_03982723.1| protein of hypothetical function DUF28 [Enterococcus faecium
TX1330]
gi|424762087|ref|ZP_18189613.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis TX1337RF]
gi|227178203|gb|EEI59175.1| protein of hypothetical function DUF28 [Enterococcus faecium
TX1330]
gi|402425815|gb|EJV57960.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium TX1337RF]
Length = 251
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 130/241 (53%), Gaps = 17/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K GGP+P+ N L V++KAK ++P D VER
Sbjct: 21 IQGRKNAQDAKRGKVFQKLSREIYMAAKAGGPDPSMNPALRLVVDKAKAANMPNDNVERA 80
Query: 143 IKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+A+ E + E YE YG GGV I+V LTD R+ VR GG + + GS
Sbjct: 81 IKKATSAVDETNYDEITYEGYGPGGVGILVHALTDNRNRTATNVRVAFTRNGGSLGETGS 140
Query: 202 VMFKFRRARVVNIKFTD--ADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
V + F R + I+ D++ + + L+AGAED+ P +++ +
Sbjct: 141 VSYLFDRKGYIVIERDGLAVDEETMFEDVLEAGAEDLQTSP------------EVFEIYT 188
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+++ + +L + + + ++P TTI++++E E + L+ KL + DDV V+
Sbjct: 189 APEDFAAVRDELEKEFTLAQAE--LTMIPQTTIDLNEEQREQLERLVDKLEDDDDVSEVF 246
Query: 320 T 320
T
Sbjct: 247 T 247
>gi|257888643|ref|ZP_05668296.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
gi|257897402|ref|ZP_05677055.1| conserved hypothetical protein [Enterococcus faecium Com12]
gi|257899962|ref|ZP_05679615.1| conserved hypothetical protein [Enterococcus faecium Com15]
gi|293378839|ref|ZP_06624994.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium PC4.1]
gi|293571067|ref|ZP_06682108.1| conserved hypothetical protein [Enterococcus faecium E980]
gi|430842698|ref|ZP_19460610.1| hypothetical protein OGO_02393 [Enterococcus faecium E1007]
gi|431043713|ref|ZP_19493003.1| hypothetical protein OIE_05693 [Enterococcus faecium E1590]
gi|431084332|ref|ZP_19496002.1| hypothetical protein OIG_05431 [Enterococcus faecium E1604]
gi|431115422|ref|ZP_19497839.1| hypothetical protein OII_04541 [Enterococcus faecium E1613]
gi|431600924|ref|ZP_19522409.1| hypothetical protein OK5_05278 [Enterococcus faecium E1861]
gi|431739277|ref|ZP_19528214.1| hypothetical protein OK9_05434 [Enterococcus faecium E1972]
gi|431742259|ref|ZP_19531154.1| hypothetical protein OKA_05579 [Enterococcus faecium E2039]
gi|431758721|ref|ZP_19547346.1| hypothetical protein OKO_02522 [Enterococcus faecium E3083]
gi|431763485|ref|ZP_19552035.1| hypothetical protein OKS_04625 [Enterococcus faecium E3548]
gi|257824697|gb|EEV51629.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
gi|257833967|gb|EEV60388.1| conserved hypothetical protein [Enterococcus faecium Com12]
gi|257837874|gb|EEV62948.1| conserved hypothetical protein [Enterococcus faecium Com15]
gi|291608850|gb|EFF38131.1| conserved hypothetical protein [Enterococcus faecium E980]
gi|292642380|gb|EFF60535.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium PC4.1]
gi|430492922|gb|ELA69263.1| hypothetical protein OGO_02393 [Enterococcus faecium E1007]
gi|430561301|gb|ELB00571.1| hypothetical protein OIE_05693 [Enterococcus faecium E1590]
gi|430564876|gb|ELB04053.1| hypothetical protein OIG_05431 [Enterococcus faecium E1604]
gi|430568581|gb|ELB07621.1| hypothetical protein OII_04541 [Enterococcus faecium E1613]
gi|430590081|gb|ELB28166.1| hypothetical protein OK5_05278 [Enterococcus faecium E1861]
gi|430596107|gb|ELB33958.1| hypothetical protein OK9_05434 [Enterococcus faecium E1972]
gi|430600415|gb|ELB38064.1| hypothetical protein OKA_05579 [Enterococcus faecium E2039]
gi|430617089|gb|ELB53975.1| hypothetical protein OKO_02522 [Enterococcus faecium E3083]
gi|430622258|gb|ELB58995.1| hypothetical protein OKS_04625 [Enterococcus faecium E3548]
Length = 240
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 130/241 (53%), Gaps = 17/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K GGP+P+ N L V++KAK ++P D VER
Sbjct: 10 IQGRKNAQDAKRGKVFQKLSREIYMAAKAGGPDPSMNPALRLVVDKAKAANMPNDNVERA 69
Query: 143 IKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+A+ E + E YE YG GGV I+V LTD R+ VR GG + + GS
Sbjct: 70 IKKATSAVDETNYDEITYEGYGPGGVGILVHALTDNRNRTATNVRVAFTRNGGSLGETGS 129
Query: 202 VMFKFRRARVVNIKFTD--ADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
V + F R + I+ D++ + + L+AGAED+ P +++ +
Sbjct: 130 VSYLFDRKGYIVIERDGLAVDEETMFEDVLEAGAEDLQTSP------------EVFEIYT 177
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+++ + +L + + + ++P TTI++++E E + L+ KL + DDV V+
Sbjct: 178 APEDFAAVRDELEKEFTLAQAE--LTMIPQTTIDLNEEQREQLERLVDKLEDDDDVSEVF 235
Query: 320 T 320
T
Sbjct: 236 T 236
>gi|431771733|ref|ZP_19560110.1| hypothetical protein OM3_05540 [Enterococcus faecium E1644]
gi|431774664|ref|ZP_19562969.1| hypothetical protein OM5_02429 [Enterococcus faecium E2369]
gi|430632723|gb|ELB68924.1| hypothetical protein OM3_05540 [Enterococcus faecium E1644]
gi|430633549|gb|ELB69704.1| hypothetical protein OM5_02429 [Enterococcus faecium E2369]
Length = 240
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 130/241 (53%), Gaps = 17/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K GGP+P+ N L V++KAK ++P D VER
Sbjct: 10 IQGRKNAQDAKRGKVFQKLSREIYMAAKAGGPDPSMNPALRLVVDKAKAANMPNDNVERA 69
Query: 143 IKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+A+ E + E YE YG GGV I+V LTD R+ VR GG + + GS
Sbjct: 70 IKKATSAVDETNYDEITYEGYGPGGVGILVHALTDNRNRTATNVRVAFTRNGGSLGETGS 129
Query: 202 VMFKFRRARVVNIK--FTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
V + F R + I+ D++ + + L+AGAED+ P +++ +
Sbjct: 130 VSYLFDRKGYIAIERDGLTVDEETMFEDVLEAGAEDLQTSP------------EVFEIYT 177
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+++ + +L + + + ++P TTI++++E E + L+ KL + DDV V+
Sbjct: 178 APEDFAAVRDELEKEFTLAQAE--LTMVPQTTIDLNEEQKEQLERLVDKLEDDDDVSEVF 235
Query: 320 T 320
T
Sbjct: 236 T 236
>gi|425055284|ref|ZP_18458765.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium 505]
gi|403034226|gb|EJY45690.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecium 505]
Length = 251
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 130/241 (53%), Gaps = 17/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K GGP+P+ N L V++KAK ++P D VER
Sbjct: 21 IQGRKNAQDAKRGKVFQKLSREIYMAAKAGGPDPSMNPALRLVVDKAKAANMPNDNVERA 80
Query: 143 IKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+A+ E + E YE YG GGV I+V LTD R+ VR GG + + GS
Sbjct: 81 IKKATSAVDETNYDEITYEGYGPGGVGILVHALTDNRNRTATNVRVAFTRNGGSLGETGS 140
Query: 202 VMFKFRRARVVNIKFTD--ADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
V + F R + I+ D++ + + L+AGAED+ P +++ +
Sbjct: 141 VSYLFDRKGYIVIERDGLAVDEETMFEDVLEAGAEDLQTSP------------EVFEIYT 188
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+++ + +L + + + ++P TTI++++E E + L+ KL + DDV V+
Sbjct: 189 APEDFVAVRDELEKEFTLAQAE--LTMIPQTTIDLNEEQREQLERLVDKLEDDDDVSEVF 246
Query: 320 T 320
T
Sbjct: 247 T 247
>gi|86142896|ref|ZP_01061318.1| hypothetical protein MED217_09637 [Leeuwenhoekiella blandensis
MED217]
gi|85830341|gb|EAQ48800.1| hypothetical protein MED217_09637 [Leeuwenhoekiella blandensis
MED217]
Length = 243
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 127/244 (52%), Gaps = 13/244 (5%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR RK + + AK ++R+GK+++ AVK+GGP+P SN+ L AV++ AK +++P
Sbjct: 1 MGRAFEFRKARKMKRWSAMAKAFTRIGKDIVIAVKEGGPDPDSNSRLRAVIQNAKSVNMP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
KD +ER IKRAS+K + E ++E Y G++I++E TD R+VA +R C G
Sbjct: 61 KDNIERAIKRASDKSLGDYKEVLFEGYAPHGIAILIETATDNNNRTVANIRSYFNKCNGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV F F I D ++L +D GAE+V E DED Y
Sbjct: 121 LGTSGSVEFMFDHTCNFRINAEGVDAEELELELIDYGAEEVFE--------DEDGIIIYG 172
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
S + + L EAG +G E +P T + E E ++L+ K+ E DDV
Sbjct: 173 PFGS----FGALQAYLEEAGHEI-LSSGFERIPQVTKTLTPEEAEDVEKLLEKIEEDDDV 227
Query: 316 DAVY 319
VY
Sbjct: 228 QNVY 231
>gi|261418391|ref|YP_003252073.1| hypothetical protein GYMC61_0924 [Geobacillus sp. Y412MC61]
gi|319767650|ref|YP_004133151.1| hypothetical protein [Geobacillus sp. Y412MC52]
gi|261374848|gb|ACX77591.1| protein of unknown function DUF28 [Geobacillus sp. Y412MC61]
gi|317112516|gb|ADU95008.1| protein of unknown function DUF28 [Geobacillus sp. Y412MC52]
Length = 246
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 136/242 (56%), Gaps = 20/242 (8%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RK AQDAK+ KL+ ++ KE+ A K GG +P SN L V+EKAK ++P + +ER
Sbjct: 10 IQRRKNAQDAKRGKLFMKLAKEIYVAAKSGGGDPASNPSLRLVIEKAKAANMPSENIERA 69
Query: 143 IKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+A+ + E++ YE YG GGV+++V LTD R+ A VR GG + + G
Sbjct: 70 IKKATGTQEHTNYEEIRYEGYGPGGVAVMVVCLTDNKNRTAANVRAAFSKNGGNLGETGC 129
Query: 202 VMFKFRRA--RVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
V + F R V++ + + D+D+LL +A++AGAE++ + TDE +++ +
Sbjct: 130 VSYLFERKGLLVIDREQHNVDEDELLLLAIEAGAEEM-------ETTDES-----FEIYT 177
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLP--ITTIEVDDEAMELNKELIAKLLELDDVDA 317
+++ + +L + G F + + ++P TT+E DD L +LI L + DDV
Sbjct: 178 APESFETVKDELEQQGFTFASAEMT-MIPQTYTTLEGDDLKKML--KLIDTLEDDDDVQE 234
Query: 318 VY 319
VY
Sbjct: 235 VY 236
>gi|449095225|ref|YP_007427716.1| hypothetical protein C663_2623 [Bacillus subtilis XF-1]
gi|449029140|gb|AGE64379.1| hypothetical protein C663_2623 [Bacillus subtilis XF-1]
Length = 251
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 136/249 (54%), Gaps = 31/249 (12%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RK AQDAK+ K++ ++ KE+ A K+GG +P +N+ L V+EKAK ++P + ++R
Sbjct: 21 IQKRKNAQDAKRGKIFMKLAKEIYVAAKEGGADPEANSALRLVIEKAKGANMPNENIDRA 80
Query: 143 IKRASEKGQE--AFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
IK+A+ GQ+ ++ E YE YG G++++VE +TD R+ + VR GG + + G
Sbjct: 81 IKKAA-GGQDGSSYEEITYEGYGPSGIAVMVECVTDNKNRTASNVRTAFNKNGGSLGESG 139
Query: 201 SVMFKFRRARVVNIKFTD--ADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
V F F R + I T+ ++D+L+ L+AG E++ + ED Y+V
Sbjct: 140 CVAFLFERKGFITIDCTERQIEEDELMLDVLEAGGEEL---RIEED---------LYEVF 187
Query: 259 STSDNYTDITTKLR------EAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLEL 312
+ +++ ++ T L A +P +LP E DD+A+E + LI L E
Sbjct: 188 TEPEHFEEVKTALESKYLISSAEVP--------MLPNPYAEADDQAVEKLETLIDVLEED 239
Query: 313 DDVDAVYTD 321
DDV VYT+
Sbjct: 240 DDVQEVYTN 248
>gi|269468787|gb|EEZ80391.1| hypothetical protein Sup05_0827 [uncultured SUP05 cluster
bacterium]
Length = 246
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 132/238 (55%), Gaps = 15/238 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKGAQDAK+ K+++++ KE++ A K GG +N L V++KA ++ +D +E
Sbjct: 10 IQHRKGAQDAKRGKIFTKLIKEIVIAAKVGGGVIENNPSLRMVIDKALAANMKRDTIESA 69
Query: 143 IKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
+KR S + E + E YE YG GG +I+V+ LTD R+VA VR GG + GS
Sbjct: 70 VKRGSGDLDGENYDEVRYEGYGLGGTAIMVDTLTDNRNRTVADVRHAFSKHGGNLGTDGS 129
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
V + F + I FT ++DQ+++ ALDAGA+D+I N+D + V++T
Sbjct: 130 VAYLFNKQGF--ISFTSGNEDQIMEAALDAGADDII---TNDDGS--------IDVITTP 176
Query: 262 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+++ + L + G+ + + + P T +E++ + E LI +L +LDD VY
Sbjct: 177 EDFFTVKDALSDVGLE-ASHSEVTMEPATRVELNLQDAEKFMRLIDRLEDLDDTQEVY 233
>gi|110635521|ref|YP_675729.1| hypothetical protein Meso_3192 [Chelativorans sp. BNC1]
gi|118574342|sp|Q11DG1.1|Y3192_MESSB RecName: Full=Probable transcriptional regulatory protein Meso_3192
gi|110286505|gb|ABG64564.1| protein of unknown function DUF28 [Chelativorans sp. BNC1]
Length = 249
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 129/239 (53%), Gaps = 13/239 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA K+K++S++ +E+ A K G P+P N L ++ A+ +PKD +ER
Sbjct: 10 IMHRKGRQDAVKSKMFSKLAREITVAAKAGLPDPAMNPRLRLAVQNARAQSMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A E + E YE Y GGV+++VE LTD R+ + VR GG + + GSV
Sbjct: 70 IKKAQGNDAETYEEIRYEGYAPGGVAVIVEALTDNRNRTASNVRAAFTKAGGALGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R + + D D++++ A++AGAEDV +DE+ + ++ +
Sbjct: 130 SFMFDRVGEIVYPASAGDADKVMEAAIEAGAEDV--------QSDENG----HVIICAFE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ ++T+ L EA E+ + P T+ VD+E + +LIA L + DDV VY +
Sbjct: 178 DIGEVTSALEEALGEAESVK-TVWRPQTSTPVDEERAQSILKLIAVLEDDDDVQNVYAN 235
>gi|374307553|ref|YP_005053984.1| glucose-1-phosphate adenylyltransferase [Filifactor alocis ATCC
35896]
gi|291166435|gb|EFE28481.1| glucose-1-phosphate adenylyltransferase [Filifactor alocis ATCC
35896]
Length = 237
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 101/164 (61%), Gaps = 3/164 (1%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR + I GRK QD+K+A ++++ + + AVK+GGP+P N L +EKAK +++P
Sbjct: 1 MGRIHN-IEGRKNKQDSKRAAVFTKYARLITVAVKEGGPDPEYNASLKTAIEKAKAMNMP 59
Query: 136 KDIVERNIKRASEKG-QEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGG 194
D +ER IK+ + G E F VYE YG GGV++++E LTD R+ VR + GG
Sbjct: 60 NDNIERAIKKGTGAGDSENFESIVYEGYGPGGVAMIIETLTDNKNRTAGNVRYYLDKNGG 119
Query: 195 KMADPGSVMFKFRRARVVNIKFT-DADKDQLLDIALDAGAEDVI 237
+ G V F F R ++ IK + D +D L+++AL+AGAED +
Sbjct: 120 NLGTSGCVSFMFDRKGIILIKKSDDISEDSLMEVALEAGAEDFL 163
>gi|190893288|ref|YP_001979830.1| hypothetical protein RHECIAT_CH0003714 [Rhizobium etli CIAT 652]
gi|226705838|sp|B3PYY8.1|Y3714_RHIE6 RecName: Full=Probable transcriptional regulatory protein
RHECIAT_CH0003714
gi|190698567|gb|ACE92652.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
Length = 248
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 129/239 (53%), Gaps = 13/239 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++S++ +E+ A K G P+PT N L ++ AK +PKD ++R
Sbjct: 10 IMHRKGRQDAVRSKMFSKLAREITVAAKAGLPDPTMNARLRLAIQNAKAQSMPKDNIDRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A+ E + E YE YG GG +I+VE LTD R+ + VR + GG + + GSV
Sbjct: 70 IKKAAGADGENYDEVRYEGYGPGGTAIIVEALTDNRNRTASNVRSIFTKAGGALGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F + K + D D++++ A++AGA+DV +TDE E +Y + +
Sbjct: 130 SFSFDHVGEITYKLSVGDADKVMEAAIEAGADDV--------ETDE---EGHY-ITCAFE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
D++ L E+G+ + + VD+E + +LI L + DDV VY++
Sbjct: 178 ALGDVSKAL-ESGLGEAETVKAVWRAQNNVPVDEEKAQSLMKLIDSLEDDDDVQNVYSN 235
>gi|407697056|ref|YP_006821844.1| hypothetical protein B5T_03234 [Alcanivorax dieselolei B5]
gi|407254394|gb|AFT71501.1| UPF0082 protein [Alcanivorax dieselolei B5]
Length = 243
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 137/243 (56%), Gaps = 15/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAK+ K+++++ +E+ + + GG N L A ++KA ++ +D ++
Sbjct: 8 ANIKHRKAAQDAKRGKIFTKLIREITVSARMGGGEINDNPRLRAAVDKALTNNMTRDTID 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IKR + A +E++ YE YG GGV+++VE +TD + R+VA VR GG +
Sbjct: 68 RAIKRGAGGDDSANMEEITYEGYGKGGVAVLVETMTDNVNRTVAEVRHAFSKFGGNLGTS 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV F F + + + D+++L+++AL+AGAEDV E N+D + + VV+
Sbjct: 128 GSVAFLFTKRGEIFFE-PGVDEEKLMELALEAGAEDVEE---NDDGS--------FLVVT 175
Query: 260 TSD-NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
D ++ D+ L+ G+ D + P T+ E+D + E +++ L +LDDV V
Sbjct: 176 APDRSFGDVVDALKAGGLE-PADAEVTMHPSTSAEMDADTAETVGKMVDHLEDLDDVQNV 234
Query: 319 YTD 321
YT+
Sbjct: 235 YTN 237
>gi|398888020|ref|ZP_10642550.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM55]
gi|398912067|ref|ZP_10655815.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM49]
gi|426411197|ref|YP_007031296.1| hypothetical protein PputUW4_04299 [Pseudomonas sp. UW4]
gi|398182820|gb|EJM70322.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM49]
gi|398191564|gb|EJM78752.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM55]
gi|426269414|gb|AFY21491.1| hypothetical protein PputUW4_04299 [Pseudomonas sp. UW4]
Length = 248
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 132/243 (54%), Gaps = 16/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK QDAK+ K++++ +E+ A ++GG +P SN L L+KA ++ +DI++
Sbjct: 8 ANIKHRKERQDAKRGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGANMSRDIID 67
Query: 141 RNIKRASEKGQ-EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R + R + + +E YE YG GGV+++VE +TD R+ AAVR CGG +
Sbjct: 68 RAVARGTGAADTDDVVELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFSKCGGNLGTD 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F R ++ D+D L++ A++A A+DV+ NED + V +
Sbjct: 128 GSVAYLFERKGQISFA-AGVDEDALMEAAMEADADDVV---TNEDGS--------IDVFT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+ + + L AG F+ D+ +LP T+ E+D E E +LI L +LDDV V
Sbjct: 176 SFAGFYSVRNALEAAG--FKGDDAEIVMLPTTSAELDLEGAEKVLKLIDMLEDLDDVQNV 233
Query: 319 YTD 321
Y++
Sbjct: 234 YSN 236
>gi|409196681|ref|ZP_11225344.1| hypothetical protein MsalJ2_06567 [Marinilabilia salmonicolor JCM
21150]
Length = 250
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 132/240 (55%), Gaps = 14/240 (5%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKGAQDAK+AK+++R+ KE+ AVK+GG +P +N L ++ + +++PKD +
Sbjct: 8 ANIKHRKGAQDAKRAKMFTRITKEIQVAVKEGGADPETNPRLRLAVQNGRSVNMPKDNIN 67
Query: 141 RNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
R I +ASE G ++F E +E YG GGV++ +E +TD R+V AVR + GG + G
Sbjct: 68 RAIAKASEIGGDSFQEIAFEGYGPGGVAVFLECMTDNNNRTVGAVRSIFNKRGGSLGTNG 127
Query: 201 SVMFKFRRARVVNI-KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
S+ F F R V I K + D ++L +DAGA+++ + DED V S
Sbjct: 128 SLSFLFDRKGVFQIVKNDEMDLEELELELIDAGAQEI--------EKDED----LIVVTS 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+++ + KL E I E + + +P E+D E + +I + + DDV V+
Sbjct: 176 EMEDFGAVQKKLEELDITVE-NAALQRIPNNYKELDLENAKKFLRMIDEFEDNDDVQNVF 234
>gi|220927640|ref|YP_002504549.1| hypothetical protein Ccel_0181 [Clostridium cellulolyticum H10]
gi|254800643|sp|B8I4L5.1|Y181_CLOCE RecName: Full=Probable transcriptional regulatory protein Ccel_0181
gi|219997968|gb|ACL74569.1| protein of unknown function DUF28 [Clostridium cellulolyticum H10]
Length = 248
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 131/242 (54%), Gaps = 16/242 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +KGA DA + K+++++G+E+ AV+ GG +P+SN+ L V+ K K ++P D ++
Sbjct: 8 ANIKRQKGAADAVRGKIFTKLGREIQIAVRMGGADPSSNSKLKDVIAKCKANNMPNDNIQ 67
Query: 141 RNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R+IKRAS E + E YE YG GGV+++ E TD R+ +R GG +
Sbjct: 68 RSIKRASGETDGSNYEEITYEGYGPGGVAVICECTTDNRNRTAGDLRHYFDKFGGNLGQS 127
Query: 200 GSVMFKFRRARVVNIKFTD-ADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
G V + F + V+ I+ D +++ L+ ALDAGAED D + Y+++
Sbjct: 128 GCVSYMFNKKGVIVIEKNDKVNEETLMMEALDAGAEDF------------DSDDNCYEII 175
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDD-EAMELNKELIAKLLELDDVDA 317
+ +++ + L G F + ++P TT ++ D E ++ +LI L +LDDV
Sbjct: 176 TDPADFSTVREALEAKGYEF-IEAEVSMIPTTTTKLTDPEQIKFMDKLIEALEDLDDVSN 234
Query: 318 VY 319
VY
Sbjct: 235 VY 236
>gi|373108191|ref|ZP_09522474.1| UPF0082 protein [Myroides odoratimimus CCUG 10230]
gi|423130092|ref|ZP_17117767.1| UPF0082 protein [Myroides odoratimimus CCUG 12901]
gi|423133773|ref|ZP_17121420.1| UPF0082 protein [Myroides odoratimimus CIP 101113]
gi|423329402|ref|ZP_17307209.1| UPF0082 protein [Myroides odoratimimus CCUG 3837]
gi|371647288|gb|EHO12797.1| UPF0082 protein [Myroides odoratimimus CCUG 12901]
gi|371647412|gb|EHO12920.1| UPF0082 protein [Myroides odoratimimus CCUG 10230]
gi|371648165|gb|EHO13657.1| UPF0082 protein [Myroides odoratimimus CIP 101113]
gi|404603802|gb|EKB03456.1| UPF0082 protein [Myroides odoratimimus CCUG 3837]
Length = 236
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 132/245 (53%), Gaps = 12/245 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR GRK + + AK ++R+GK+++ AVK+GGPNP +N L AV++ AK ++P
Sbjct: 1 MGRAFEFRKGRKLKRWSAMAKTFTRIGKDIVMAVKEGGPNPEANARLRAVIQNAKAANMP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
KD VER IKRA++K E + E ++E YG G++ ++E TD R+VA +R C G
Sbjct: 61 KDNVERAIKRATDKDTENYKEVIFEGYGPHGIAFLIECATDNNNRTVANIRSYFNKCNGT 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV F F N + + L + L ++I+ ++E DED Y
Sbjct: 121 LGTQGSVEFMF--DHTCNFRIPAEEGRDLEEFEL-----ELIDFGIDEIFEDEDGVMIY- 172
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+ +++ I +L GI +G + +P T E+ +E + ++L+ K+ E DDV
Sbjct: 173 ---APFESFGSIQKELEGRGIEI-LSSGFDRIPQVTKELSEEEIADVEKLLEKIEEDDDV 228
Query: 316 DAVYT 320
V+T
Sbjct: 229 QNVFT 233
>gi|357019186|ref|ZP_09081442.1| hypothetical protein KEK_04232 [Mycobacterium thermoresistibile
ATCC 19527]
gi|356481046|gb|EHI14158.1| hypothetical protein KEK_04232 [Mycobacterium thermoresistibile
ATCC 19527]
Length = 251
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 128/238 (53%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K DA++ K+++++ K + A + GG +P N L ++KAK+ VP D +ER KR
Sbjct: 13 KKAIIDARRGKMFAKLIKNIEVAARVGGGDPAGNPTLYDAIQKAKKASVPNDNIERARKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
+ E G + YE YG GV++++E LTD R+ + VR + GG MADPGSV
Sbjct: 73 GAGEEAGGADWQTVTYEGYGPNGVAVLIECLTDNRNRAASEVRVAMTRNGGNMADPGSVA 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R VV ++ D +D +L LDAGAEDV D +R ++VV +
Sbjct: 133 YLFNRKGVVILEKNDLTEDDVLTAVLDAGAEDV-----------NDLGDR-FEVVCEPGD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ T L++AGI +++ S +P T+ +D + +L+ L + DDV VYT+
Sbjct: 181 LVAVRTALQDAGIDYDSAELS-FIPSVTVPLDADGARKVMKLVEALEDSDDVQEVYTN 237
>gi|389706431|ref|ZP_10186444.1| hypothetical protein HADU_05593 [Acinetobacter sp. HA]
gi|388610566|gb|EIM39683.1| hypothetical protein HADU_05593 [Acinetobacter sp. HA]
Length = 249
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 139/246 (56%), Gaps = 22/246 (8%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK QDA + KL+++ +E+ +A K GGP+ SN L AV+EKA +++ +D++
Sbjct: 8 ANIKHRKAKQDASRGKLFTKYIRELTTAAKLGGPDAGSNPRLRAVVEKALSVNMTRDVIN 67
Query: 141 RNIKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I+R A + + E YE YG GGV+++VE +TD + R+V VR G +
Sbjct: 68 RAIQRGAGGEDNDDLKEVTYEGYGVGGVAVIVETMTDNLNRTVPDVRHCFSKTDGNLGTN 127
Query: 200 GSVMFKFRRARVVNIKFTDAD-KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
GSV F F + I F D +DQ++++AL+AGAED+ + DED V+
Sbjct: 128 GSVAFLFTKRG--EITFEDVSLEDQIMEVALEAGAEDI--------EVDEDE----ILVI 173
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELL-PITTIEVD--DEAMELNKELIAKLLELDDV 315
+T +++ + L AG+ ++DN ++ P T E+ D+A ++ K +I L +LDDV
Sbjct: 174 TTPESFGTVQDALAAAGL--KSDNAEVVMSPSTKAEITDIDQAKKIMK-MIDMLEDLDDV 230
Query: 316 DAVYTD 321
VYT+
Sbjct: 231 QNVYTN 236
>gi|161899028|ref|YP_613888.2| hypothetical protein TM1040_1893 [Ruegeria sp. TM1040]
gi|118574104|sp|Q1GFE0.2|Y1893_SILST RecName: Full=Probable transcriptional regulatory protein
TM1040_1893
Length = 246
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 130/247 (52%), Gaps = 25/247 (10%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKG QDA ++KL+S++ KE+ A K G P+P N L +++AK VPKD+++
Sbjct: 8 ANIQHRKGRQDAARSKLFSKLSKEITVAAKMGDPDPEKNPRLRLAVKEAKSNSVPKDVID 67
Query: 141 RNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
R IK+A+ E + E YE YG GV+++VE +TD R+ + VR GG + + G
Sbjct: 68 RAIKKATGGDAENYDEIRYEGYGPNGVAVIVETMTDNKNRTASTVRSTFSKNGGNLGETG 127
Query: 201 SVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
SV F F R V + D D ++ A++AGAEDV ++ ED V+
Sbjct: 128 SVGFMFERKGEVTYPASVGDADTVMMAAIEAGAEDV--------ESSEDG-----HVIFC 174
Query: 261 SDNYTDITTKLREAGIPFETDNG----SELL--PITTIEVDDEAMELNKELIAKLLELDD 314
+D T L E E + G ++L+ P TT E+D E M+ +L+ L + DD
Sbjct: 175 AD------TDLNEVSNALEAELGESESTKLIWKPTTTTELDLEGMQKLMKLVDALEDDDD 228
Query: 315 VDAVYTD 321
V V T+
Sbjct: 229 VQRVTTN 235
>gi|402772572|ref|YP_006592109.1| hypothetical protein BN69_2007 [Methylocystis sp. SC2]
gi|401774592|emb|CCJ07458.1| Conserved hypothetical protein [Methylocystis sp. SC2]
Length = 248
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 132/241 (54%), Gaps = 17/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I +KG QDA ++KL+S++ +E+ A K G P+P N L A + A+ ++PKD +ER
Sbjct: 10 IMHKKGKQDAIRSKLFSKLAREITVAAKMGLPDPNMNARLRAAVLAARAENMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+AS E + E YE Y GGV++++E LTD R+ VR GG +A+ G+V
Sbjct: 70 IKKASGADAENYDEVRYEGYAPGGVAVIIEALTDNRNRTAGEVRSYFTKAGGALAETGAV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R +V A +D +++ A+DAGA+DV TDE ++V+++ +
Sbjct: 130 SFMFDRVGLVEFDKKAATEDAMMEAAIDAGADDV-------STTDE-----AHEVITSVE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ D+ L E F + L+ P TI+VDDE+ E +L+ L + DDV VY
Sbjct: 178 SLRDVARALEE---KFGEPRKAALVWRPQNTIKVDDESGEKILKLVGLLEDNDDVQNVYA 234
Query: 321 D 321
+
Sbjct: 235 N 235
>gi|303230191|ref|ZP_07316959.1| DNA-binding regulatory protein, YebC/PmpR family [Veillonella
atypica ACS-134-V-Col7a]
gi|429760264|ref|ZP_19292745.1| DNA-binding regulatory protein, YebC/PmpR family [Veillonella
atypica KON]
gi|302515117|gb|EFL57091.1| DNA-binding regulatory protein, YebC/PmpR family [Veillonella
atypica ACS-134-V-Col7a]
gi|429177765|gb|EKY19070.1| DNA-binding regulatory protein, YebC/PmpR family [Veillonella
atypica KON]
Length = 245
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 129/231 (55%), Gaps = 23/231 (9%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +KG DA KAKL +++G+E+ A + GG +PT N L L+KA+E ++PKD
Sbjct: 6 KWANIKHKKGKTDALKAKLATKIGREITVAARMGGADPTGNMRLKLALQKARENNIPKD- 64
Query: 139 VERNIKRASEKG-----QEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCG 193
NI+RA +KG A+ E VYE YG GV++ VEV+TD R+ A VR G
Sbjct: 65 ---NIQRAIDKGVGATDMNAYEEIVYEGYGPAGVAVTVEVMTDNRNRAAADVRHAFSKQG 121
Query: 194 GKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAER 253
G + + G V + F+ V I D+D+L +ALDAGAED+ EDD
Sbjct: 122 GNLGESGCVGWMFKSKGVFVIDKEGHDEDELTLLALDAGAEDLKA----EDDV------- 170
Query: 254 YYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVD-DEAMELNK 303
+++ +T +++ + L +AGI E + ++P TTIE+ D+A ++ K
Sbjct: 171 -FEIYTTPEDFDAVEQALADAGIETEVAKIT-MIPDTTIELSGDDAEKMQK 219
>gi|296126683|ref|YP_003633935.1| hypothetical protein [Brachyspira murdochii DSM 12563]
gi|296018499|gb|ADG71736.1| protein of unknown function DUF28 [Brachyspira murdochii DSM 12563]
Length = 247
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 136/245 (55%), Gaps = 15/245 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGG-PNPTSNTVLAAVLEKAKELDVPKD 137
+ + I +K A D+KK K++S++ KE+ AVK+GG P+P N L V+ KAK ++P D
Sbjct: 6 KWASIKHKKAANDSKKGKIWSKIAKEITIAVKEGGSPDPDQNARLRMVIVKAKGTNMPND 65
Query: 138 IVERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKM 196
++R IKR + G+ A IE++ YE Y GGV+I+V+V TD R+ A +R + GG +
Sbjct: 66 NIDRAIKRGAGAGEGANIEEMSYEGYAPGGVAIIVDVATDNKNRTAAEIRSIFSKNGGNL 125
Query: 197 ADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
A+ G+V ++F++ VV I ++ L+DI LDAGAED+ E D + +
Sbjct: 126 AENGAVSWQFKKKAVVIIPAAGNTEESLMDIVLDAGAEDI------EQDGE------VFS 173
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
+ + + I L+ GI E+ + T +++A ++ K +I + DDV
Sbjct: 174 ITGPMEALSSIVDALKAKGIEPESAEIVRVADNTMTIAENDAKKVMK-IIGLFEDHDDVS 232
Query: 317 AVYTD 321
AV T+
Sbjct: 233 AVATN 237
>gi|365896737|ref|ZP_09434795.1| conserved hypothetical protein [Bradyrhizobium sp. STM 3843]
gi|365422506|emb|CCE07337.1| conserved hypothetical protein [Bradyrhizobium sp. STM 3843]
Length = 248
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 130/246 (52%), Gaps = 27/246 (10%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA K+KL+ ++ +E+ + K G P+P N L A + A+ ++PKD +ER
Sbjct: 10 IMHRKGRQDAMKSKLFGKLAREITVSAKLGTPDPAMNPRLRAAVVAARAENMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A + + E YE YG GGV+++VE LTD R+ + +R GG + + GSV
Sbjct: 70 IKKALGGEGDNYDEIRYEGYGPGGVAVIVEALTDNRNRAASDIRSYFTKSGGNLGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R ++ + A D +LD A++AGA+DV+ +E +++ ++ +
Sbjct: 130 SFMFDRVGIIEYDSSVASDDTMLDAAIEAGADDVMS------------SESGHEIYASPE 177
Query: 263 NYTDITTKL-------REAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
N+ ++ L R+A + ++ P T+ VDDE E +L+ L E DDV
Sbjct: 178 NFREVAKNLEAKFGEPRKAALTWK--------PQNTVAVDDETGEKLLKLMDLLNEHDDV 229
Query: 316 DAVYTD 321
VY +
Sbjct: 230 QNVYAN 235
>gi|73663363|ref|YP_302144.1| hypothetical protein SSP2054 [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|119391296|sp|Q49VL1.1|Y2054_STAS1 RecName: Full=Probable transcriptional regulatory protein SSP2054
gi|72495878|dbj|BAE19199.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 238
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 123/246 (50%), Gaps = 16/246 (6%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K +D +++Y++ GKE+ A K G P+P SN L LE+AK VP
Sbjct: 1 MGRKWNNIKEKKAQKDKNTSRIYAKFGKEIYVAAKSGEPDPESNQALRLTLERAKTYSVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
I+E+ I++A G+E + E YE +G G I+V+ LTD + R+ + VR GG
Sbjct: 61 NHIIEKAIEKAKGSGEENYDELRYEGFGPSGSMIIVDALTDNVNRTASDVRSAFGKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNED-DTDEDRAERY 254
M GSV + F V I+ D A+D++E + +D D + E
Sbjct: 121 MGVSGSVAYMFEYTAVFGIE--------------DKSADDILESLMEQDIDVRDVIDENG 166
Query: 255 YKVV-STSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELD 313
+V + D + + LRE G+ E+LP T IE+ E E + L+ L +LD
Sbjct: 167 LTIVYAEPDQFAQVQDALRETGVDTFKVAEFEMLPQTDIELSAEDQETFETLVEALEDLD 226
Query: 314 DVDAVY 319
DV V+
Sbjct: 227 DVQNVF 232
>gi|229820480|ref|YP_002882006.1| hypothetical protein Bcav_1989 [Beutenbergia cavernae DSM 12333]
gi|259646543|sp|C5C5Q3.1|Y1989_BEUC1 RecName: Full=Probable transcriptional regulatory protein Bcav_1989
gi|229566393|gb|ACQ80244.1| protein of unknown function DUF28 [Beutenbergia cavernae DSM 12333]
Length = 252
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 131/239 (54%), Gaps = 16/239 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K DA++ KL++++ K + A + GG +P N L ++KAK+ VP D ++R +KR
Sbjct: 13 KKAVIDARRGKLFAKLIKNIEVAARTGGGDPAGNPTLYDAIQKAKKTSVPNDNIDRAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
+ E G + +YE Y GGV+++VE LTD R+ + VR GG +ADPGSV
Sbjct: 73 GAGLEAGGADYQTIMYEGYAPGGVAVLVECLTDNRNRAASDVRVAFTRNGGSLADPGSVS 132
Query: 204 FKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
+ F R VV + TD D+D +L LDAGAE+V D E ++V+S +
Sbjct: 133 YLFSRRGVVVVPKTDGLDEDDVLGAVLDAGAEEV-----------NDLGE-AFEVLSEAT 180
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ + T L++AG+ +++ ++ +P T IEVD + LI L + DDV V+ +
Sbjct: 181 DLVAVRTALQDAGLDYDSAE-AQFVPATQIEVDVDGARKVLRLIDALEDSDDVQNVFAN 238
>gi|428280237|ref|YP_005561972.1| hypothetical protein BSNT_04039 [Bacillus subtilis subsp. natto
BEST195]
gi|291485194|dbj|BAI86269.1| hypothetical protein BSNT_04039 [Bacillus subtilis subsp. natto
BEST195]
Length = 260
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 136/244 (55%), Gaps = 21/244 (8%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RK AQDAK+ K++ ++ KE+ A K+GG +P +N+ L V+EKAK ++P + ++R
Sbjct: 30 IQKRKNAQDAKRGKIFMKLAKEIYVAAKEGGADPEANSALRLVIEKAKGANMPNENIDRA 89
Query: 143 IKRASEKGQE--AFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
IK+A+ GQ+ ++ E YE YG G++++VE +TD R+ + VR GG + + G
Sbjct: 90 IKKAA-GGQDGSSYEEITYEGYGPSGIAVMVECVTDNKNRTASNVRTAFNKNGGSLGESG 148
Query: 201 SVMFKFRRARVVNIKFTD--ADKDQLLDIALDAGAEDV-IEPPVNEDDTDEDRAERYYKV 257
V F F R + I T+ ++D+L+ L+AG E++ IE E Y+V
Sbjct: 149 CVAFLFERKGFITIDRTERQIEEDELMLDVLEAGGEELRIE-------------ENLYEV 195
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ +++ ++ T L + + +LP T E DD+A+E + LI L + DDV
Sbjct: 196 FTEPEHFEEVKTALESKYLISSAE--VTMLPNTYAEADDQAVEKLETLIDVLEDDDDVQE 253
Query: 318 VYTD 321
VYT+
Sbjct: 254 VYTN 257
>gi|347534550|ref|YP_004841220.1| hypothetical protein LSA_08870 [Lactobacillus sanfranciscensis TMW
1.1304]
gi|345504606|gb|AEN99288.1| UPF0082 protein [Lactobacillus sanfranciscensis TMW 1.1304]
Length = 246
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 130/240 (54%), Gaps = 17/240 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ + + A K GG +P N L LEKA+ ++PKD V+R
Sbjct: 10 IQGRKNAQDAKRGKIFQKISRNLYQAAKSGGVDPDGNPQLRLELEKARAANMPKDNVQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ +AS G F E YE YG GG +++V LTD R+ AAVR GG + GSV
Sbjct: 70 LDKASGVGAANFEEVTYEGYGPGGTAVMVSTLTDNRNRTAAAVRSAFTHHGGSLGTNGSV 129
Query: 203 MFKF-RRARVVNIK-FTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R+ +V ++ T+ D+D +L ALDAGA+D+ V +D+ Y++ +
Sbjct: 130 SYNFDRKGYIVVLRDDTEDDEDTMLMEALDAGADDM---KVTDDE---------YQIFTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
N + L+ +G ++ DN L P T EV ++ + LI +L E DDV VY
Sbjct: 178 PSNMVAVRDALQASG--YKLDNSEVRLFPQTVTEVPEDKIAQYTGLIDELSENDDVQDVY 235
>gi|330466881|ref|YP_004404624.1| hypothetical protein VAB18032_14560 [Verrucosispora maris
AB-18-032]
gi|328809852|gb|AEB44024.1| hypothetical protein VAB18032_14560 [Verrucosispora maris
AB-18-032]
Length = 249
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 127/238 (53%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K DAK+ K+++++ K V A + GG +P N L ++KAK+ VP D ++R +KR
Sbjct: 13 KKAVIDAKRGKMFAKLIKNVEVAARTGGGDPAGNPTLYDAIQKAKKNSVPNDNIDRAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S E G + +YE YG GV++++E LTD R+ VR + GG AD GSV
Sbjct: 73 GSGLEAGGADYQTIMYEGYGPNGVALLIECLTDNRNRAATEVRTALTRNGGSFADAGSVS 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R VV + D +D ++ LDAGAE+V +D E ++VVS +
Sbjct: 133 YMFSRKGVVIVPKADTSEDDVMLAVLDAGAEEV-------NDLGE-----AFEVVSEPGD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ T L++AGI +E+ S L+P + +D+E +LI L + DDV VY +
Sbjct: 181 LLAVRTALQDAGIEYESAE-SSLIPSVNVPLDEEGARKVFKLIDVLEDCDDVQNVYAN 237
>gi|407006693|gb|EKE22535.1| hypothetical protein ACD_6C00791G0006 [uncultured bacterium]
Length = 249
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 139/246 (56%), Gaps = 22/246 (8%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK QDA + K++++ +E+ +A K GGP+ SN L AV+EKA +++ +D++
Sbjct: 8 ANIKHRKAKQDASRGKVFTKYIRELTTAAKLGGPDTASNPRLRAVVEKALSVNMTRDVIN 67
Query: 141 RNIKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I+R A + + E YE YG GGV+++VE +TD + R+V VR G +
Sbjct: 68 RAIQRGAGGEDNDDLKEVTYEGYGVGGVAVIVETMTDNLNRTVPDVRHCFSKTDGNLGTN 127
Query: 200 GSVMFKFRRARVVNIKFTDAD-KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
GSV F F + I F D +DQ++++AL+AGAED+ V EDD V+
Sbjct: 128 GSVAFLFTKRG--EITFEDVSLEDQIMEVALEAGAEDI---EVTEDD---------ILVI 173
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELL-PITTIEVD--DEAMELNKELIAKLLELDDV 315
+T + + ++ L AG+ ++DN ++ P T E+ D+A ++ K +I L +LDDV
Sbjct: 174 TTPEAFGEVQDALTAAGL--KSDNAEVVMSPSTKAEITDIDQAKKIMK-MIDMLEDLDDV 230
Query: 316 DAVYTD 321
VYT+
Sbjct: 231 QNVYTN 236
>gi|406933503|gb|EKD68139.1| hypothetical protein ACD_48C00062G0002 [uncultured bacterium]
Length = 245
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/251 (32%), Positives = 132/251 (52%), Gaps = 19/251 (7%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ SKI +KG DA++ L++++ K + A K GG + T N L +EKAKE +VPKD
Sbjct: 6 KWSKIQHKKGKADAQRGNLFTKLCKAITMAAKDGGGDATMNFSLRLAVEKAKEENVPKDN 65
Query: 139 VERNIKRASE--KGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKM 196
++R+IK+ + K E E +YE YG GG++++VE LTD R+V+ V+ G +
Sbjct: 66 IDRSIKKGTGELKDGEEIQEIIYEGYGPGGIAVLVETLTDNKNRTVSEVKNAFTKHNGSV 125
Query: 197 ADPGSVMFKFRRARVVNIK-----FTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRA 251
PGSV ++F R VV I + DK++L ++AGA D++E
Sbjct: 126 GGPGSVQWQFERRGVVAISNNQLAINNLDKEELELTLIEAGASDILE------------F 173
Query: 252 ERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLE 311
+ + +V + + + L+ GI D G + + + VD E +E + L L
Sbjct: 174 DEHIEVRCPVEKFQSVLEALKVCGITKPEDAGLKWVAKEEVAVDGETVEKMEILYDALDA 233
Query: 312 LDDVDAVYTDQ 322
LDDV+ +YT++
Sbjct: 234 LDDVNEIYTNE 244
>gi|383318051|ref|YP_005378893.1| YebC/PmpR family DNA-binding regulatory protein [Frateuria aurantia
DSM 6220]
gi|379045155|gb|AFC87211.1| DNA-binding regulatory protein, YebC/PmpR family [Frateuria
aurantia DSM 6220]
Length = 244
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 140/254 (55%), Gaps = 23/254 (9%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR S I GRK A+DAK+AK+++++ +E+ A + G P+P N L ++KA ++
Sbjct: 1 MGRGPS-IEGRKNAEDAKRAKVFTKLIREITVATRAGVPDPALNPRLRTAVDKALTANMT 59
Query: 136 KDIVERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGG 194
KD +ER IKR S A + ++ YE YG GG++++++ TD R+VA VR + GG
Sbjct: 60 KDTIERAIKRGSGADGGAEMHEIRYEGYGPGGIALIIDCFTDNPVRTVADVRFALSKHGG 119
Query: 195 KMADPGSVMFKFRRARVVNIKFT----DADKDQLLDIALDAGAEDVIEPPVNEDDTDEDR 250
+ GSV F+F ARV + F +A ++Q+L+ AL+AGA+DV VNE
Sbjct: 120 NLGTSGSVAFQF--ARVGELVFATGGDEAQEEQVLEAALEAGADDV----VNESGQS--- 170
Query: 251 AERYYKVVSTSDNYTDITTKLREAGI-PFETDNGSELLPITTIEVDDEAMELNKELIAKL 309
V++ D + + L+ AG+ P D + P V +E +E +++ +L
Sbjct: 171 -----VVLTAPDQFPRVQEALQAAGLTPVSAD--VVMRPENRSAVPEEVLESFLDMLDRL 223
Query: 310 LELDDVDAVYTDQI 323
+LDDV +Y + I
Sbjct: 224 EDLDDVQDIYHNAI 237
>gi|345876117|ref|ZP_08827894.1| hypothetical protein l11_19820 [Neisseria weaveri LMG 5135]
gi|417956833|ref|ZP_12599772.1| hypothetical protein l13_01780 [Neisseria weaveri ATCC 51223]
gi|343967338|gb|EGV35585.1| hypothetical protein l11_19820 [Neisseria weaveri LMG 5135]
gi|343969962|gb|EGV38164.1| hypothetical protein l13_01780 [Neisseria weaveri ATCC 51223]
Length = 242
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/249 (34%), Positives = 136/249 (54%), Gaps = 24/249 (9%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +K QDAK+ K+++R+ KE+ A K GG +P SN L ++KA + ++PKD
Sbjct: 8 ANIRHKKERQDAKRGKIFTRLIKEITVAAKMGGGDPASNPRLRLAMDKAFDNNMPKD--- 64
Query: 141 RNIKRASEKGQE-----AFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
NI+RA +KG +IE YE YG GG +++V+ LTD TR+VA VR GG
Sbjct: 65 -NIQRAIDKGTGNLEGVEYIELRYEGYGIGGAALMVDCLTDNKTRTVADVRHAFNKNGGN 123
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ G V F F + + D+D L++ AL+AGAEDV+ N+D +
Sbjct: 124 LGTDGCVAFNFVHQGYL-LFAPGVDEDALMEAALEAGAEDVV---TNDDGS--------L 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDD 314
+V++ +++ I + L EAG F++++G + E+ E E ++LI L +LDD
Sbjct: 172 EVITAPNDWAGIKSALEEAG--FKSEDGDVTMRAQNETELSGEDAEKMQKLIDALEDLDD 229
Query: 315 VDAVYTDQI 323
V VYT +
Sbjct: 230 VQDVYTSAV 238
>gi|290967722|ref|ZP_06559277.1| DNA-binding regulatory protein, YebC/PmpR family [Megasphaera
genomosp. type_1 str. 28L]
gi|290782238|gb|EFD94811.1| DNA-binding regulatory protein, YebC/PmpR family [Megasphaera
genomosp. type_1 str. 28L]
Length = 241
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 130/246 (52%), Gaps = 22/246 (8%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +KG DA +AK+ +++G+E+ AV+ GG +P N L L+KAKE ++PK+
Sbjct: 6 KWANIKRKKGKNDAIRAKITTKIGREITIAVRMGGADPVGNMRLKLALQKAKENNIPKE- 64
Query: 139 VERNIKRASEKGQEA-----FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCG 193
NIKRA +KG A + E VYE YG GV++ V VLTD R+ A VR V G
Sbjct: 65 ---NIKRAIQKGAGATEGQNYEEIVYEGYGPAGVAVTVNVLTDNRNRTAADVRHVFSKYG 121
Query: 194 GKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAER 253
M + G V + F + + D+D ++++ALDAGA+DV +
Sbjct: 122 SSMGETGCVGWMFHSKGIFIVDKAVTDEDTVMELALDAGADDV------------KTGDE 169
Query: 254 YYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELD 313
+++++ +N+ + L E I E + ++P I+++ E E + LI L +LD
Sbjct: 170 EFEIITAPENFDSVEKALAEHNIATEHAQIT-MVPDNLIKLNAEDAEKMETLIDALEDLD 228
Query: 314 DVDAVY 319
DV VY
Sbjct: 229 DVQDVY 234
>gi|302866744|ref|YP_003835381.1| hypothetical protein Micau_2261 [Micromonospora aurantiaca ATCC
27029]
gi|315503159|ref|YP_004082046.1| hypothetical protein ML5_2373 [Micromonospora sp. L5]
gi|302569603|gb|ADL45805.1| protein of unknown function DUF28 [Micromonospora aurantiaca ATCC
27029]
gi|315409778|gb|ADU07895.1| protein of unknown function DUF28 [Micromonospora sp. L5]
Length = 249
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 127/238 (53%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K DAK+ K+++++ K V A + GG +P N L ++KAK+ VP D ++R +KR
Sbjct: 13 KKAVIDAKRGKMFAKLIKNVEVAARTGGGDPAGNPTLYDAIQKAKKNSVPNDNIDRAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S E G + +YE YG GV++++E LTD R+ VR + GG +AD GSV
Sbjct: 73 GSGLEAGGADWQTIMYEGYGPNGVAMLIECLTDNRNRAATEVRTALTRNGGSLADAGSVS 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R VV + +D ++ LDAGAE+V +D E Y+VVS +
Sbjct: 133 YMFSRKGVVIVPKAGTSEDDVMMAVLDAGAEEV-------NDLGE-----AYEVVSEPGD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ T L++AGI +E+ S L+P + +D+E +LI L + DDV VY +
Sbjct: 181 LVAVRTALQDAGIEYESAE-SSLIPSVNVPLDEEGARKIFKLIDVLEDCDDVQNVYAN 237
>gi|296132695|ref|YP_003639942.1| hypothetical protein TherJR_1177 [Thermincola potens JR]
gi|296031273|gb|ADG82041.1| protein of unknown function DUF28 [Thermincola potens JR]
Length = 250
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 139/247 (56%), Gaps = 18/247 (7%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RK QDA+K K+++++GKE+I AVK+GG +P +N L AV++K +E ++P D
Sbjct: 6 KWANIKHRKAKQDAQKGKIFTKLGKELIVAVKQGGGDPEANPRLKAVIQKCREANMPMDN 65
Query: 139 VERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ R I +A+ E + E VYE YG GGV++++ V TD R+ +R + GG +
Sbjct: 66 INRTIAKATGELAGVNYEEIVYEGYGPGGVAVLLNVTTDNRNRTAGEIRHLFSKHGGNLG 125
Query: 198 DPGSV--MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ G V MF+ + +N + D D L+ + LDAGAED+ E EDD E
Sbjct: 126 ESGCVAWMFENKGLITLNKEEVTMDGDDLMLLVLDAGAEDMKE----EDDMIE------- 174
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVD-DEAMELNKELIAKLLELDD 314
+++ ++ + L G+ E + +LP +T+ V DEA+++ K L+ L + DD
Sbjct: 175 -IITAPEDLHKVKEVLTAQGLKPEVAELT-MLPKSTVAVQGDEAVKMMK-LMDLLEDHDD 231
Query: 315 VDAVYTD 321
V AVY +
Sbjct: 232 VQAVYAN 238
>gi|350264952|ref|YP_004876259.1| hypothetical protein GYO_0945 [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349597839|gb|AEP85627.1| conserved hypothetical protein [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 258
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 127/245 (51%), Gaps = 12/245 (4%)
Query: 75 CMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDV 134
MGR+ + I +K ++DA +++Y++ G+E+ A K+G P+P SN L VLE+AK V
Sbjct: 19 IMGRKWNNIKEKKASKDANTSRIYAKFGREIYVAAKQGEPDPESNQALKVVLERAKTYSV 78
Query: 135 PKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGG 194
PK+I+ER I++A +E F E YE +G G I+V+ LT+ + R+ VR GG
Sbjct: 79 PKNIIERAIEKAKGGAEENFDELRYEGFGPNGSMIIVDALTNNVNRTAPEVRAAFGKNGG 138
Query: 195 KMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERY 254
M GSV + F V+ + AD+ + + D D++E EDD+
Sbjct: 139 NMGVSGSVAYMFDATAVIGVDGKTADEALEILMEADVDVRDILE----EDDS-------- 186
Query: 255 YKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDD 314
V + D + + + AG+ T +L + + + D+A E ++LI L +L+D
Sbjct: 187 VIVYAEPDQFHAVQEAFKNAGVEEFTVAELTMLAQSEVTLPDDAKEQFEKLIDALEDLED 246
Query: 315 VDAVY 319
V VY
Sbjct: 247 VQQVY 251
>gi|414175519|ref|ZP_11429923.1| UPF0082 protein [Afipia broomeae ATCC 49717]
gi|410889348|gb|EKS37151.1| UPF0082 protein [Afipia broomeae ATCC 49717]
Length = 248
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 124/241 (51%), Gaps = 17/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++ ++ +E+ A K G P+P N L + A+ +VPKD +ER
Sbjct: 10 IMHRKGKQDAMRSKMFGKLAREITVAAKLGTPDPAMNPRLRLAITAARAENVPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A E + E YE YG GGV+++VE LTD R+ + +R GG + + GSV
Sbjct: 70 IKKAIGNDGENYDEMRYEGYGPGGVAVIVEALTDNRNRAASDIRSYFTKSGGNLGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R V+ A D +L+ A++AGA+DV +E ++V ++ +
Sbjct: 130 SFMFDRVGVIEYDAKVASDDAMLEAAIEAGADDVAS------------SEDGHEVYASPE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ ++ L F + L+ P TI VDDE E +L+ L E DDV VY
Sbjct: 178 TFREVAKGLE---AKFGEARKAALIWKPQNTIAVDDETGEKLFKLLDLLNEHDDVQNVYA 234
Query: 321 D 321
+
Sbjct: 235 N 235
>gi|395769327|ref|ZP_10449842.1| hypothetical protein Saci8_06092 [Streptomyces acidiscabies 84-104]
Length = 250
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 130/238 (54%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K DAK+ KL+++M K + A + GG +P+ N L ++KAK+ VP ++ +KR
Sbjct: 13 KKAVIDAKRGKLFAKMIKNIEVAARTGGADPSGNPTLFDAIQKAKKSSVPNKNIDSAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
+ E G + +YE YG GV++++E LTD R+ + VR + GG MADPGSV
Sbjct: 73 GAGLEAGGADYETIMYEGYGPNGVAVLIECLTDNRNRAASDVRVAMTRNGGNMADPGSVS 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R V+ + + +D +LD LDAGAE+V D E ++V+S + +
Sbjct: 133 YLFNRKGVIIVPKGELSEDDVLDAVLDAGAEEV-----------NDLGES-FEVLSEATD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ T L+ AGI +++ + S +P +E+D+E +LI L + DDV V+ +
Sbjct: 181 LVAVRTALQSAGIDYDSAD-SNFVPTMQVELDEEGARKIFKLIDALEDSDDVQNVFAN 237
>gi|322420880|ref|YP_004200103.1| hypothetical protein GM18_3392 [Geobacter sp. M18]
gi|320127267|gb|ADW14827.1| protein of unknown function DUF28 [Geobacter sp. M18]
Length = 247
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 139/247 (56%), Gaps = 21/247 (8%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ S I +KGA DAK+ K+++++ KE+ A K GG + N L ++KAK ++PKD
Sbjct: 6 KWSTIKHKKGAADAKRGKVFTKLIKEITVAAKLGGGDADGNPRLRTAIDKAKAENMPKDN 65
Query: 139 VERNIKRASEKGQEA--FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKM 196
VER IK+ G E + E YE YG GG +++VEV+TD R+V+ VR + C G M
Sbjct: 66 VERAIKKGV-GGLEGVNYEETTYEGYGPGGTAVLVEVMTDNRNRTVSEVRSIFSKCNGNM 124
Query: 197 ADPGSVMFKF-RRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ G V + F ++ +V K TD DK L + +++AGA+DV NED+ Y
Sbjct: 125 GETGCVSWLFDKKGLLVFPKSTDFDK--LFEASIEAGADDV----TNEDEQ--------Y 170
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDD 314
+V++ + + T L EAG F+ +N ++P T ++++ + E +L+ ++ + DD
Sbjct: 171 EVLTDPTAFHQVKTALEEAG--FKAENAEITMIPQTMVKLEGKNAENMLKLMDRMEDNDD 228
Query: 315 VDAVYTD 321
V VY +
Sbjct: 229 VQNVYAN 235
>gi|326390108|ref|ZP_08211669.1| protein of unknown function DUF28 [Thermoanaerobacter ethanolicus
JW 200]
gi|325993756|gb|EGD52187.1| protein of unknown function DUF28 [Thermoanaerobacter ethanolicus
JW 200]
Length = 246
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 136/243 (55%), Gaps = 15/243 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +K DAKK ++++++ K++I A K+GG +P +N+ L +EKAK ++P +
Sbjct: 6 KWANIKHKKEKMDAKKGRIFTKLTKDIIKAAKEGGGDPNTNSKLRDAIEKAKANNLPNEN 65
Query: 139 VERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
++R IK+ + E G E +YE YG G +I+VE LTD R+ +R + GG +
Sbjct: 66 IQRAIKKGTGELGGANLEEVIYEGYGPAGTAIIVEALTDNKNRTAGEIRHIFDRHGGSLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
GSV + F + ++ ++ D+ D+D+L +A+DAGA+D + ED ++
Sbjct: 126 AAGSVTWMFDKVGIIIVEKNDSIDEDELAMVAIDAGAQDF---------SAEDEE---FE 173
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
+++ N+ ++ + +AG ++ +LP TI++ E E ++LI KL E DDV
Sbjct: 174 IITEPSNFQEVKEAIEKAGYKI-SEAEVTMLPKNTIQLSPEDYEKFEKLIDKLEENDDVQ 232
Query: 317 AVY 319
VY
Sbjct: 233 NVY 235
>gi|389843525|ref|YP_006345605.1| YebC/PmpR family DNA-binding regulatory protein [Mesotoga prima
MesG1.Ag.4.2]
gi|387858271|gb|AFK06362.1| DNA-binding regulatory protein, YebC/PmpR family [Mesotoga prima
MesG1.Ag.4.2]
Length = 252
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 144/246 (58%), Gaps = 26/246 (10%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKGAQDAK++K+++++ +E++ + ++GG +P +NT L + +EKA+ ++PKD +E
Sbjct: 8 ANIKHRKGAQDAKRSKVFTKIIRELMVSAREGGSDPNTNTSLRSAIEKARSANMPKDTME 67
Query: 141 RNIKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
+ IK+ A E ++F E +YE Y GGV++++ LTD R+ +R + GG MA+
Sbjct: 68 KAIKKGAGELEGQSFSEALYEGYAPGGVALLIRCLTDNKNRTAQEIRHTLSKYGGSMAES 127
Query: 200 GSVMFKFRRARVVNI---KFTDADKDQLLDIALDAGAEDVI--EPPVNEDDTDEDRAERY 254
G+V + F R V+ + + +D ++ QLL A++AGAED+ E P+
Sbjct: 128 GAVSWMFERKGVITVAKEQISDLEEFQLL--AIEAGAEDIKDEEDPI------------- 172
Query: 255 YKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVD-DEAMELNKELIAKLLELD 313
+V++ ++ +D+ T L E G + +P +++V+ +A +L K L+ L + D
Sbjct: 173 -IIVTSPESVSDVKTALEENGYTLSYE--MSYIPSNSLKVEGSDAAKLLK-LLDILEDND 228
Query: 314 DVDAVY 319
DV VY
Sbjct: 229 DVQEVY 234
>gi|89891440|ref|ZP_01202945.1| conserved hypothetical protein [Flavobacteria bacterium BBFL7]
gi|89516214|gb|EAS18876.1| conserved hypothetical protein [Flavobacteria bacterium BBFL7]
Length = 247
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 132/245 (53%), Gaps = 4/245 (1%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR RK + + +K ++R+GK+++ AVK+GGP+P SN L AV++ AK +++P
Sbjct: 1 MGRAFEFRKARKMKRWSAMSKAFTRIGKDIVIAVKEGGPDPESNAKLRAVIQNAKAVNMP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K VER IK+A++K + ++E Y G++++VE TD R+VA VR C G
Sbjct: 61 KANVERAIKKATDKDTANYETVLFEGYAPHGIAVLVETSTDNNNRTVANVRSYFTKCDGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
++ GSV F F I D D ++L +D GAE++ ++E D ++D +
Sbjct: 121 LSTSGSVEFMFDHKCHFRIPAGDVDLEELELELIDFGAEELF---LDEKDEEDDNSVDGI 177
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+ + NY + + E G +G E +P EV E E ++L+ KL E DDV
Sbjct: 178 MIYAEFQNYGALQKGIEELGHEI-LSSGFEYIPTMQKEVTAEQREDVEKLLEKLDEDDDV 236
Query: 316 DAVYT 320
+ VYT
Sbjct: 237 NNVYT 241
>gi|221310721|ref|ZP_03592568.1| hypothetical protein Bsubs1_15211 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221324247|ref|ZP_03605541.1| hypothetical protein BsubsS_15177 [Bacillus subtilis subsp.
subtilis str. SMY]
Length = 260
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 136/243 (55%), Gaps = 19/243 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RK AQDAK+ K++ ++ KE+ A K+GG +P +N+ L V+EKAK ++P + ++R
Sbjct: 30 IQKRKNAQDAKRGKIFMKLAKEIYVAAKEGGADPEANSALRLVIEKAKGANMPNENIDRA 89
Query: 143 IKRASEKGQE--AFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
IK+A+ GQ+ ++ E YE YG G++++VE +TD R+ + VR GG + + G
Sbjct: 90 IKKAA-GGQDGSSYEEITYEGYGPSGIAVMVECVTDNKNRTASNVRTAFNKNGGSLGESG 148
Query: 201 SVMFKFRRARVVNIKFTD--ADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
V F F R + I T+ ++D+L+ L+AG E++ + ED Y+V
Sbjct: 149 CVAFLFERKGFITIDRTERQIEEDELMLDVLEAGGEEL---RIEED---------LYEVF 196
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+ +++ ++ T L + + +LP T E DD+A+E + LI L + DDV V
Sbjct: 197 TEPEHFEEVKTALESKYLISSAE--VTMLPNTYAEADDQAVEKLETLIDVLEDDDDVQEV 254
Query: 319 YTD 321
YT+
Sbjct: 255 YTN 257
>gi|260425960|ref|ZP_05779939.1| conserved hypothetical protein [Citreicella sp. SE45]
gi|260420452|gb|EEX13703.1| conserved hypothetical protein [Citreicella sp. SE45]
Length = 246
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 128/247 (51%), Gaps = 25/247 (10%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKG QDA +AKL+S+ KE+ A K G P+P N L +++AK +PKD +E
Sbjct: 8 ANIQHRKGRQDAVRAKLFSKFSKEITIAAKMGDPDPDKNPRLRLAVKEAKSQSMPKDNIE 67
Query: 141 RNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
R IK+A + + E YE YG GV+I+VE +TD R+ + VR GG + + G
Sbjct: 68 RAIKKAMGGDGDDYEEIRYEGYGPNGVAIIVEAMTDNRNRTASNVRSTFTKNGGNLGETG 127
Query: 201 SVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
SV F F R + K D D ++ A++AGAEDV E D +E V+
Sbjct: 128 SVAFMFERKGEIIYKIAAGDADTIMMAAIEAGAEDV------ESDEEE-------HVIYC 174
Query: 261 SDNYTDITTKLREAGIPFETDNG----SELL--PITTIEVDDEAMELNKELIAKLLELDD 314
+D T L E ET G ++L+ P TT E+D ++M+ +L+ L + DD
Sbjct: 175 AD------TDLNEVATALETALGESESTKLIWKPTTTTELDLDSMQTLMKLVDALEDDDD 228
Query: 315 VDAVYTD 321
V V T+
Sbjct: 229 VQRVTTN 235
>gi|213964215|ref|ZP_03392449.1| conserved hypothetical protein [Capnocytophaga sputigena Capno]
gi|213953134|gb|EEB64482.1| conserved hypothetical protein [Capnocytophaga sputigena Capno]
Length = 239
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 129/244 (52%), Gaps = 13/244 (5%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR RK + A AK ++R+GK+++ AVK+GGP+P SN+ L AV++ AK ++P
Sbjct: 1 MGRAFEFRKARKFKRWAAMAKTFTRIGKDIVMAVKEGGPHPESNSRLRAVIQNAKAANMP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K+ +ER IK+ASEK + E ++E Y G+++++E TD R+VA +R C G
Sbjct: 61 KENIERAIKKASEKDTANYKEVLFEGYAPHGIAVLIETATDNNNRTVANIRSYFNKCNGT 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV F F I T D ++L +D GAE+V V+ED
Sbjct: 121 LGTSGSVEFMFDHTCNFRINATGIDPEELELEMIDFGAEEVF---VDEDGI--------- 168
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+ + +++ I +L GI +G E +P T E+ E ++L+ K+ E +DV
Sbjct: 169 LIYAPFESFGAIQKELESRGIEI-LSSGFERIPQVTKELTPEEQADVEKLLEKIEEDEDV 227
Query: 316 DAVY 319
VY
Sbjct: 228 QNVY 231
>gi|163745948|ref|ZP_02153307.1| hypothetical protein OIHEL45_10188 [Oceanibulbus indolifex HEL-45]
gi|161380693|gb|EDQ05103.1| hypothetical protein OIHEL45_10188 [Oceanibulbus indolifex HEL-45]
Length = 246
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 125/241 (51%), Gaps = 13/241 (5%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKG QD +AK++S++ KE+ A K G P+P N L +++AK +PKD +E
Sbjct: 8 ANIQHRKGRQDKLRAKVFSKLSKEITIAAKMGDPDPEKNPRLRMAVKEAKGQSMPKDNIE 67
Query: 141 RNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
R IK+A E + E YE YG GV+++VE +TD R+ + VR GG + + G
Sbjct: 68 RAIKKAIGGEGEDYEEIRYEGYGPNGVAVIVEAMTDNRNRTASTVRSTFTKNGGNLGETG 127
Query: 201 SVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
SV F F R V + D D ++ A++AGAEDV + +E + + T
Sbjct: 128 SVGFMFERKGEVIYPASVGDADTVMMAAIEAGAEDV------------ESSEDGHVIYCT 175
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ D++T L EA + P TT E+D EAME +L+ L E DDV V T
Sbjct: 176 DTDLNDVSTAL-EAELGESESTKLIWRPTTTTEMDLEAMEKLMKLVDALEEDDDVQRVTT 234
Query: 321 D 321
+
Sbjct: 235 N 235
>gi|89071234|ref|ZP_01158415.1| hypothetical protein OG2516_04648 [Oceanicola granulosus HTCC2516]
gi|89043247|gb|EAR49476.1| hypothetical protein OG2516_04648 [Oceanicola granulosus HTCC2516]
Length = 249
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 125/241 (51%), Gaps = 13/241 (5%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKG QDA ++KL+S++ KE+ A K G P+P N L +++AK VPKD+++
Sbjct: 8 ANIQHRKGRQDAARSKLFSKLAKEITVAAKMGDPDPDKNPRLRLAVKEAKSNSVPKDVID 67
Query: 141 RNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
R IK+A E + E YE YG GGV+++VE +TD R+ + VR GG + + G
Sbjct: 68 RAIKKAVGGDAENYEEIRYEGYGPGGVAVIVEAMTDNRNRTASTVRSTFGKNGGNLGETG 127
Query: 201 SVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
SV F F R V D D ++ A++AGAEDV + E+ + +
Sbjct: 128 SVGFMFERKGQVVYPAAAGDADDIMMAAIEAGAEDV------------ESGEKEHVIWCA 175
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ +++ L EA + P TT E+D E ++ +L+ L + DD+ +V T
Sbjct: 176 DTDLAEVSNAL-EAQLGESESTKLVWRPTTTAELDLEGLQKLMKLVDALEDDDDIQSVTT 234
Query: 321 D 321
+
Sbjct: 235 N 235
>gi|392966949|ref|ZP_10332367.1| protein of unknown function DUF28 [Fibrisoma limi BUZ 3]
gi|387843746|emb|CCH54415.1| protein of unknown function DUF28 [Fibrisoma limi BUZ 3]
Length = 237
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 128/245 (52%), Gaps = 13/245 (5%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR RK + + AK ++R+GK+++ AVK GGP+P +N L AV++ AK ++P
Sbjct: 1 MGRAFEYRKARKMKRWGQMAKTFTRIGKDIVIAVKNGGPDPDTNGRLRAVIQNAKAANMP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
KD VER IK+AS K QE + E VYE Y G+++V+E TD R+VA +R + GG
Sbjct: 61 KDNVERAIKKASSKEQEDYKEIVYEAYAPHGIALVIETATDNHNRTVANIRSYLNKLGGS 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ G + F F R V I D+++L +D G E+V + DE+ + Y
Sbjct: 121 LGTQGMLDFMFDRKSVFRISAEGVDQEELEFELIDVGGEEV--------ELDEETNQ--Y 170
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDD 314
+ + I L E G +E E +P E+ DE + ++LI ++ E DD
Sbjct: 171 VIYGEFTAFGAIQKFLEEKG--YEIKQAEFERIPNDYKELTDEEVADVEKLIERIEEDDD 228
Query: 315 VDAVY 319
V VY
Sbjct: 229 VQNVY 233
>gi|374373435|ref|ZP_09631095.1| UPF0082 protein yeeN [Niabella soli DSM 19437]
gi|373234408|gb|EHP54201.1| UPF0082 protein yeeN [Niabella soli DSM 19437]
Length = 229
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 125/230 (54%), Gaps = 10/230 (4%)
Query: 93 KKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQE 152
+ AK ++R+GKE+ AVK GGP+P +N L ++ AK +++PKD VE IKRA K E
Sbjct: 7 RMAKQFTRIGKEIAIAVKAGGPDPHTNAALRRCMQNAKSVNMPKDRVEAAIKRAQGKEME 66
Query: 153 AFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVV 212
F E +YE YG GV+++VE TD R+VA V+ GG + + GSV F+F + V
Sbjct: 67 NFDEILYEGYGPHGVAVLVETATDNHVRTVANVKSHFNKGGGTLGNSGSVAFQFNKMGVF 126
Query: 213 NIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLR 272
+ + + L +DAG E++ E TDE+ + V+ +D + ++ L
Sbjct: 127 KLNPAGLNAEDLELELIDAGLEELGE------STDENGKDILVARVAFND-FGNMQKALE 179
Query: 273 EAGI-PFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
E I P + E +P TT+ V DE E +LI +L + DDV V+ +
Sbjct: 180 ERNITPISAE--VEWIPSTTVPVTDEQAEEVSKLIERLEQDDDVQKVFHN 227
>gi|339061779|ref|ZP_08648998.1| hypothetical protein imdm_2182 [gamma proteobacterium IMCC2047]
gi|330720193|gb|EGG98578.1| hypothetical protein imdm_2182 [gamma proteobacterium IMCC2047]
Length = 244
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 134/241 (55%), Gaps = 17/241 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAK+ K+++R +E+ A + GG +P N L +++AK ++PKD ++
Sbjct: 8 ANIKHRKAAQDAKRGKIFTRFIRELTVAARAGGGDPEDNPRLRLAVDRAKSANMPKDTMQ 67
Query: 141 RNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
R I R E E YE YG GV+++VE +TD R+VA VR GG + G
Sbjct: 68 RAIDRGVGGEGENLEEITYEGYGQAGVAVLVETMTDNRNRTVAEVRHAFTKFGGNLGTDG 127
Query: 201 SVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
SV + F + + + AD+D +++ AL+AGA+DV+ N+D++ VV+T
Sbjct: 128 SVSYLFTKQGQITFE-PGADEDAIMEAALEAGADDVV---TNDDES--------IDVVTT 175
Query: 261 SDNYTDITTKLREAGI-PFETDNGSELLPITTIEVD-DEAMELNKELIAKLLELDDVDAV 318
++++ L AG+ P + ++P T++++D D A ++ K LI L ELDDV V
Sbjct: 176 PAEFSNVKDALEAAGLEPVNAE--VAMVPSTSVDLDVDTATKVMK-LIDMLEELDDVQNV 232
Query: 319 Y 319
+
Sbjct: 233 F 233
>gi|345017505|ref|YP_004819858.1| hypothetical protein Thewi_1151 [Thermoanaerobacter wiegelii
Rt8.B1]
gi|392941148|ref|ZP_10306792.1| DNA-binding regulatory protein, YebC/PmpR family
[Thermoanaerobacter siderophilus SR4]
gi|344032848|gb|AEM78574.1| UPF0082 protein yeeN [Thermoanaerobacter wiegelii Rt8.B1]
gi|392292898|gb|EIW01342.1| DNA-binding regulatory protein, YebC/PmpR family
[Thermoanaerobacter siderophilus SR4]
Length = 246
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 136/243 (55%), Gaps = 15/243 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +K DAKK ++++++ K++I A K+GG +P +N+ L +EKAK ++P +
Sbjct: 6 KWANIKHKKEKMDAKKGRIFTKLTKDIIKAAKEGGGDPNTNSKLRDAIEKAKANNLPNEN 65
Query: 139 VERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
++R IK+ + E G E +YE YG G +I+VE LTD R+ +R + GG +
Sbjct: 66 IQRAIKKGTGELGGANLEEVIYEGYGPSGTAIIVEALTDNKNRTAGEIRHIFDRHGGSLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
GSV + F + ++ ++ D+ D+D+L +A+DAGA+D + ED ++
Sbjct: 126 AAGSVTWMFDKVGIIIVEKNDSIDEDELAMVAIDAGAQDF---------SAEDEE---FE 173
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
+++ N+ ++ + +AG ++ +LP TI++ E E ++LI KL E DDV
Sbjct: 174 IITEPSNFQEVKEAIEKAGYKI-SEAEVTMLPKNTIQLSPEDYEKFEKLIDKLEENDDVQ 232
Query: 317 AVY 319
VY
Sbjct: 233 NVY 235
>gi|410939200|ref|ZP_11371035.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
noguchii str. 2006001870]
gi|410785705|gb|EKR74661.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
noguchii str. 2006001870]
Length = 249
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 137/238 (57%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A D+K+ +++R+GKE+ A K GG +P N L + KAK +++PKD +ER +++
Sbjct: 13 KKDAIDSKRGAIFTRVGKEITVAAKMGGGDPEGNPRLRLAILKAKSVNMPKDNIERAVRK 72
Query: 146 AS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMF 204
+ E + E +YE +G GG++I+V +TDK +R+ ++ ++ GG +A GSV
Sbjct: 73 GTGELEGVTYEECLYECFGPGGIAIMVSAVTDKKSRTTPEIKSILTKLGGSLATSGSVSR 132
Query: 205 KFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNY 264
F + V+ ++ + +D+L+D+A+ GAEDVI NE D Y+V+++ D+Y
Sbjct: 133 LFEKKGVIVLESSQISEDELVDVAVGGGAEDVI----NEGDV--------YRVITSPDDY 180
Query: 265 TDITTKLREAGIPFETDNGSELLPITTIEV-DDEAMELNKELIAKLLELDDVDAVYTD 321
+ L E G+ E ++ +P+ + E+ D E E +LI +L DDV +V ++
Sbjct: 181 ETVLHALNEKGLKSE-ESEIRYIPLVSSEIADKEVAEKVMKLIDQLDGHDDVTSVTSN 237
>gi|255262233|ref|ZP_05341575.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
gi|255104568|gb|EET47242.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
Length = 246
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 132/244 (54%), Gaps = 19/244 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKG QD ++KL+S++ KE+ A K G P+P +N L +++AK VPKD+++
Sbjct: 8 ANIQHRKGRQDKLRSKLFSKLAKEITVAAKMGDPDPDNNPRLRMAVKEAKSQSVPKDVID 67
Query: 141 RNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
R IK++ + + E YE YG GV+++VE +TD R+ + VR GG + + G
Sbjct: 68 RAIKKSQAGEGDNYDEIRYEGYGPSGVAVIVEAMTDNRNRTASTVRSTFTKNGGNLGETG 127
Query: 201 SVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
SV F F R V+ D D ++ A++AGAEDV + E + V
Sbjct: 128 SVGFMFERKGTVSYPAAVGDDDTVMMAAIEAGAEDV------------ESGEDGHVVWCA 175
Query: 261 SDNYTDITTKL-REAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ D++T L +E G E+D+ ++L+ P TT E+D E M+ +L+ L + DD+
Sbjct: 176 DTDLNDVSTALEQELG---ESDS-TKLVWRPTTTTELDLEGMQKLMKLVDALEDDDDIQT 231
Query: 318 VYTD 321
V T+
Sbjct: 232 VTTN 235
>gi|395765394|ref|ZP_10445998.1| UPF0082 protein [Bartonella sp. DB5-6]
gi|395412067|gb|EJF78579.1| UPF0082 protein [Bartonella sp. DB5-6]
Length = 248
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 123/239 (51%), Gaps = 13/239 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++S++ +E+ A K+G P+P+ N L ++ AK +PKD +ER
Sbjct: 10 IMHRKGRQDAMRSKIFSKLAREITVAAKQGAPDPSMNPRLRLAVQNAKAQSMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+AS E + E YE YG GGV+++VE LTD R+ + VR GG + + GSV
Sbjct: 70 IKKASGNDVEHYDEVRYEGYGPGGVAVIVEALTDNRNRTASNVRAAFTKSGGALGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R + K D ++D A++AGAEDV E + + +
Sbjct: 130 SFMFNRIGEIIYKPEAGTADSIMDAAIEAGAEDV------------QSEETGHHITCAFE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ ++ +K+ EA + + IT VD+E LI+ L E DDV VY +
Sbjct: 178 DIGEV-SKMLEAKLGEAQSIKTVWKAITLAPVDEEKALSVLRLISTLEEDDDVQNVYAN 235
>gi|138896161|ref|YP_001126614.1| hypothetical protein GTNG_2524 [Geobacillus thermodenitrificans
NG80-2]
gi|196250115|ref|ZP_03148809.1| protein of unknown function DUF28 [Geobacillus sp. G11MC16]
gi|166228394|sp|A4IRB5.1|Y2524_GEOTN RecName: Full=Probable transcriptional regulatory protein GTNG_2524
gi|134267674|gb|ABO67869.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
NG80-2]
gi|196210299|gb|EDY05064.1| protein of unknown function DUF28 [Geobacillus sp. G11MC16]
Length = 247
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 136/240 (56%), Gaps = 16/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RK AQDAK+ KL+ ++ KE+ A K GG +P +N L V+EKAK ++P + +ER
Sbjct: 10 IQRRKNAQDAKRGKLFMKLAKEIYVAAKNGGGDPAANPSLRLVIEKAKAANMPGENIERA 69
Query: 143 IKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+A+ + E++ YE YG GGV+++V LTD R+ A VR GG + + G
Sbjct: 70 IKKATGNQEHTNYEEIRYEGYGPGGVAVMVVCLTDNKNRTAANVRSAFSKNGGNLGETGC 129
Query: 202 VMFKFRRA--RVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
V + F R V++ + + ++D+LL +A++AGAE++ + TDE +++ +
Sbjct: 130 VSYLFERKGLLVIDREQHNMEEDELLLLAIEAGAEEM-------ETTDES-----FEIYT 177
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
T +++ + +L + G+ F + + ++P T + + ++ +LI L + DDV VY
Sbjct: 178 TPESFETVKEQLEQQGLTFASAEIT-MIPQTYTTLSGDELKKMLKLIDTLEDDDDVQEVY 236
>gi|298293010|ref|YP_003694949.1| hypothetical protein Snov_3055 [Starkeya novella DSM 506]
gi|296929521|gb|ADH90330.1| protein of unknown function DUF28 [Starkeya novella DSM 506]
Length = 248
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 127/239 (53%), Gaps = 13/239 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++KL+S++ +E+ + K G P+P N L A + A+ ++PKD ++R
Sbjct: 10 IMHRKGKQDAVRSKLFSKLAREITVSAKLGMPDPNMNPRLRAAILAARAENMPKDNIDRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A E + E YE YG GGV+++VE LTD R+ + VR GG +A+ G+V
Sbjct: 70 IKKAQGGDAENYDEIRYEGYGPGGVAVIVEALTDNRNRTASEVRSYFTKSGGSLAETGAV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R VV A +D +++ A++AGA+DV +E ++VV + +
Sbjct: 130 SFMFDRIGVVEFDAAKASEDAMMEAAIEAGADDV------------SSSEDGHEVVCSVE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
N ++ L EA +G P T+ VDDE E L+ L + DDV VY +
Sbjct: 178 NLHEVARAL-EAKFGEPRKSGLVWRPQNTVAVDDEVAEKLIRLVDTLNDNDDVQNVYAN 235
>gi|343521369|ref|ZP_08758337.1| DNA-binding regulatory protein, YebC/PmpR family [Parvimonas sp.
oral taxon 393 str. F0440]
gi|343396575|gb|EGV09112.1| DNA-binding regulatory protein, YebC/PmpR family [Parvimonas sp.
oral taxon 393 str. F0440]
Length = 247
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 129/243 (53%), Gaps = 15/243 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ S I +KG +DA++ K+++++ + +I AVK+GG +P N L +EKAK ++P D
Sbjct: 6 KWSTIKHKKGKEDARRGKIFTKLARYIIVAVKEGGADPEYNPALKTAIEKAKAENMPNDN 65
Query: 139 VERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ER +K+ + G + E + YE YG G+++VVE LTD R+ A VR GG +
Sbjct: 66 IERALKKGAGDGDASNYETIIYEGYGPEGIAVVVECLTDNRNRTAADVRHAFDKHGGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV+F F + V+ I A++D L+D AL+ GA D + E Y V
Sbjct: 126 QNGSVLFMFEKKGVIVITREQAEEDDLMDFALENGASDF------------ESDEEVYTV 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDD-EAMELNKELIAKLLELDDVD 316
S ++ + L+E G F + E +P ++ + E ++ ++I +L + DDV
Sbjct: 174 YSEVADFITLRDALQEKGYTFSACD-LEYVPSNNSQITNPENIKKMVKMIDQLEDNDDVQ 232
Query: 317 AVY 319
VY
Sbjct: 233 NVY 235
>gi|150020877|ref|YP_001306231.1| hypothetical protein Tmel_0985 [Thermosipho melanesiensis BI429]
gi|166227546|sp|A6LLP5.1|Y985_THEM4 RecName: Full=Probable transcriptional regulatory protein Tmel_0985
gi|149793398|gb|ABR30846.1| protein of unknown function DUF28 [Thermosipho melanesiensis BI429]
Length = 252
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 138/243 (56%), Gaps = 17/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAK++K+++++ +E+I A ++GG +P +N L AV+E+A+ ++PKD +E
Sbjct: 8 ANIKHRKAAQDAKRSKIFTKLIREIIVAAREGGGDPETNPRLRAVIERARAANMPKDTIE 67
Query: 141 RNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
++IK+ + + + + E +YE Y GV++ + +TD R+ +R ++ GG +A+
Sbjct: 68 KSIKKGTGELEGVDYQEIIYEAYAPAGVALYIYAMTDNKNRTAQELRHLLSKHGGSLAES 127
Query: 200 GSVMFKFRRARVVNI-KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
GSV + F R ++ I K AD ++ +A+DAGAED+I EDD +VV
Sbjct: 128 GSVAWLFERKGIIEIPKDKVADFEEFAMVAIDAGAEDII-----EDDP--------IQVV 174
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+ + T++ L G FE + +P T++V E +LI+ L + DDV V
Sbjct: 175 TAPEKLTEVKDNLASNG--FEGEAKVTFIPKNTVKVTGADAEKVLKLISVLEDNDDVQEV 232
Query: 319 YTD 321
Y +
Sbjct: 233 YAN 235
>gi|295695623|ref|YP_003588861.1| hypothetical protein [Kyrpidia tusciae DSM 2912]
gi|295411225|gb|ADG05717.1| protein of unknown function DUF28 [Kyrpidia tusciae DSM 2912]
Length = 247
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 133/245 (54%), Gaps = 22/245 (8%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA + +L+++M +E+ +A ++GG NP +N L +E+A+ ++P D ++R
Sbjct: 10 IQRRKGKQDAVRGQLFTKMSREIYAATRQGGSNPETNYRLKTAIERARAANMPMDSIQRT 69
Query: 143 IKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
I +A+ + + E YE YG GG +++V++LTD R+ A +R + GG + + G
Sbjct: 70 IDKAAGNVEGVNYEEMFYEGYGPGGAAVMVQLLTDNRNRTAAEIRHIFSKRGGSLGESGC 129
Query: 202 VMFKFRRARVVNIK---FTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
V + F R V+ I F ++ D ++ AL+AGAED +EDR Y +
Sbjct: 130 VAWMFDRKGVIEISREGFPGSEDDAMM-AALEAGAEDFT--------AEEDR----YVIT 176
Query: 259 STSDNYTDITTKLREAGIPFETDNGSE--LLPITTIEVDDEAMELNKELIAKLLELDDVD 316
+ ++ L +AG+P G+E +P TT+ ++ + + +L+ L E DDV
Sbjct: 177 VAPEQLREVRENLEKAGVPIA---GAEVTFVPQTTVNLEGDEAQRMVDLLEALEEHDDVQ 233
Query: 317 AVYTD 321
V+++
Sbjct: 234 NVFSN 238
>gi|372266979|ref|ZP_09503027.1| hypothetical protein AlS89_03732 [Alteromonas sp. S89]
Length = 247
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/243 (35%), Positives = 132/243 (54%), Gaps = 17/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAK+ K+++++ +E+ A K GG NP N L A ++KA ++ +D ++
Sbjct: 8 ANIKHRKAAQDAKRGKVFTKIIRELTVAAKSGG-NPDDNPALRATIDKALGANMKRDTID 66
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
+ I R + E V YE YG GGV+++VE LTD R+VA VR GG +
Sbjct: 67 KAIARGAGNADGENYEAVTYEGYGVGGVAVLVECLTDNRNRTVAEVRHAFTKRGGNLGTD 126
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F R + + AD+D L++ AL+AGAED+ N+D + E V +
Sbjct: 127 GSVAYLFARKGQMYYE-AGADEDALMEAALEAGAEDI---ETNDDGSIE--------VTT 174
Query: 260 TSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+Y + L EAG F+ DN ++P TT+ +D + E L+ L +LDDV V
Sbjct: 175 EFTDYMSVKDALTEAG--FKPDNAEIAMIPSTTVPMDKDGAEKVLALVDMLEDLDDVQNV 232
Query: 319 YTD 321
YT+
Sbjct: 233 YTN 235
>gi|154252561|ref|YP_001413385.1| hypothetical protein Plav_2114 [Parvibaculum lavamentivorans DS-1]
gi|189035388|sp|A7HUZ5.1|Y2114_PARL1 RecName: Full=Probable transcriptional regulatory protein Plav_2114
gi|154156511|gb|ABS63728.1| protein of unknown function DUF28 [Parvibaculum lavamentivorans
DS-1]
Length = 248
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 125/238 (52%), Gaps = 17/238 (7%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
RKGAQD K++KL++++ KE+ A K G P+P N L A ++ A+ ++PKD +ER IK+
Sbjct: 13 RKGAQDKKRSKLFAKLAKEITVAAKMGLPDPEYNPRLRAAIQAARVENMPKDNIERAIKK 72
Query: 146 ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 205
+S++G E + E YE +G GG+ ++VE LTD R+ VR + GG + + G+V F
Sbjct: 73 SSDQGGENYEEVRYEGFGPGGIGVIVETLTDNRNRTAGEVRSIFTKNGGNLGETGAVSFM 132
Query: 206 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 265
F R ++ A D +++ A++AGA+D E +++ D
Sbjct: 133 FDRLGLIEYPADAASADDMIEAAIEAGADDC------------QSGEAGHELYCAPDALH 180
Query: 266 DITTKLREAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
++ L F + ++ P TI ++DE E +++ L + DDV VY +
Sbjct: 181 EVAQGLES---KFGEARAARIVWKPQNTIALEDEKAETVLKMLEALDDNDDVQQVYAN 235
>gi|375009688|ref|YP_004983321.1| hypothetical protein [Geobacillus thermoleovorans CCB_US3_UF5]
gi|448238872|ref|YP_007402930.1| DNA-binding regulatory protein [Geobacillus sp. GHH01]
gi|359288537|gb|AEV20221.1| hypothetical protein GTCCBUS3UF5_29180 [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|445207714|gb|AGE23179.1| DNA-binding regulatory protein [Geobacillus sp. GHH01]
Length = 246
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 136/242 (56%), Gaps = 20/242 (8%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RK AQDAK+ KL+ ++ KE+ A K GG +P SN L V+EKAK ++P + +ER
Sbjct: 10 IQRRKNAQDAKRGKLFMKLAKEIYVAAKSGGGDPASNPSLRLVIEKAKAANMPSENIERA 69
Query: 143 IKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+A+ + E++ YE YG GGV+++V LTD R+ A VR GG + + G
Sbjct: 70 IKKATGTQEHTNYEEIRYEGYGPGGVAVMVVCLTDNKNRTAANVRAAFSKNGGNLGETGC 129
Query: 202 VMFKFRRA--RVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
V + F R V++ + + D+D+LL +A++AGAE++ + TDE +++ +
Sbjct: 130 VSYLFERKGLLVIDREQHNVDEDELLLLAIEAGAEEM-------ETTDES-----FEIYT 177
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLP--ITTIEVDDEAMELNKELIAKLLELDDVDA 317
+++ + +L + G F + + ++P TT+E DD L +LI L + DDV
Sbjct: 178 APESFETVKDELEQQGFTFASAEIT-MIPQTYTTLEGDDLKKML--KLIDTLEDDDDVQE 234
Query: 318 VY 319
VY
Sbjct: 235 VY 236
>gi|227529717|ref|ZP_03959766.1| protein of hypothetical function DUF28 [Lactobacillus vaginalis
ATCC 49540]
gi|227350383|gb|EEJ40674.1| protein of hypothetical function DUF28 [Lactobacillus vaginalis
ATCC 49540]
Length = 245
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 125/239 (52%), Gaps = 15/239 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +++ A K G P+P +N L V++KA ++PK ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKISRDLYQAAKAGDPDPANNAQLRLVIDKAHAANMPKKNIDRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
I +AS G F E YE Y GGV+++V LTD R+ AAVR GG + GSV
Sbjct: 70 IAKASGIGGAKFEEVTYEGYAPGGVAVMVSALTDNKNRTAAAVRSAFTHAGGSLGASGSV 129
Query: 203 MFKFRRARVVNIKFTDADK--DQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R ++ + DK D +L ALDAGA+D+ TDE +++ +
Sbjct: 130 SYMFDRKGLIEVLRDGLDKSEDDMLMDALDAGADDMKA-------TDE-----KFQIFTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
N T + L+E G +T + + T+ +D+ + N LI +L DDV +Y
Sbjct: 178 PSNMTSVRDALQEKGYELDTAEVTMIPQNRTVVPEDKVKQYN-HLIDELTANDDVADIY 235
>gi|383821677|ref|ZP_09976913.1| hypothetical protein MPHLEI_20079 [Mycobacterium phlei RIVM601174]
gi|383332526|gb|EID11002.1| hypothetical protein MPHLEI_20079 [Mycobacterium phlei RIVM601174]
Length = 252
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 122/238 (51%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K DA++ K+++++ K + A + GG +P N L ++KAK+ VP D +ER KR
Sbjct: 13 KKAVIDARRGKMFAKLIKNIEVAARVGGGDPAGNPTLYDAIQKAKKSSVPNDNIERARKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S E G + YE YG GV++++E LTD R+ VR + GG MADPGSV
Sbjct: 73 GSGEEAGGADYQNITYEGYGPNGVAVLIECLTDNRNRAAGEVRVAMTRNGGSMADPGSVS 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R V+ + +D +L LDAGAEDV D E + + SD
Sbjct: 133 YLFSRKGVITLDKNGLSEDDVLAAVLDAGAEDV-----------NDLGESFEILCEPSD- 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ T L+EAGI +E+ P ++ +D + +L+ L +LDDV VYT+
Sbjct: 181 LVAVRTALQEAGIDYESAEAG-FEPSVSVPLDADGARKIMKLVDALEDLDDVQNVYTN 237
>gi|150390003|ref|YP_001320052.1| hypothetical protein Amet_2235 [Alkaliphilus metalliredigens QYMF]
gi|149949865|gb|ABR48393.1| protein of unknown function DUF28 [Alkaliphilus metalliredigens
QYMF]
Length = 251
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 131/243 (53%), Gaps = 15/243 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
R I RKG QDAKKAK+Y+++ + + A ++ G +P N L ++KA+ ++P D
Sbjct: 17 RIGNIIQRKGKQDAKKAKIYTKLARLISVAARESGGDPEYNAALKNAMDKARAQNMPNDN 76
Query: 139 VERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
++R IK+ + E G + + +YE YG GV+++VEVLTD R+ VR GG +
Sbjct: 77 IDRAIKKGTGEAGGNQYEQIIYEGYGPSGVAVIVEVLTDNRNRTAGDVRHAFDKNGGNLG 136
Query: 198 DPGSVMFKF-RRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
G V F F R+ ++V K D++ L+ ALDAGAED I DE+ Y
Sbjct: 137 TSGCVAFSFDRKGQIVIEKEDTIDEETLMMGALDAGAEDFI--------VDEEA----YA 184
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
+++T +++T + LR+ G F + + LP E+ +E ++ LI L + DDV
Sbjct: 185 IITTPEDFTIVKDNLRQEGHKFFSAD-IIYLPQVEAELPEEDIKKMNRLIDMLEDNDDVQ 243
Query: 317 AVY 319
V+
Sbjct: 244 EVH 246
>gi|332528320|ref|ZP_08404320.1| hypothetical protein HGR_00425 [Hylemonella gracilis ATCC 19624]
gi|332042191|gb|EGI78517.1| hypothetical protein HGR_00425 [Hylemonella gracilis ATCC 19624]
Length = 239
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 133/240 (55%), Gaps = 14/240 (5%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKG QD K+ K+++R+ +E+ A + GG +P++N L ++KAK ++P D V+
Sbjct: 8 ANIQHRKGRQDEKRGKIWTRIIREITVAARAGGGDPSANPRLRLAIDKAKAANMPADRVK 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
NI +A+ + E++ YE YG GG +I+V+ +TD R+VA VR GG M
Sbjct: 68 YNIDKATGNQEGVNYEEIRYEGYGIGGAAIIVDTMTDNRVRTVAEVRHAFSKHGGNMGTE 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV F+F+ + I +D+++++AL+AGAEDVI DED A +V++
Sbjct: 128 GSVAFQFKHCGQL-IFAPGTSEDKVMEVALEAGAEDVI--------ADEDGA---IEVLT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
++ + L AG+ E G + TIE+ + E ++L+ + +LDDV VY
Sbjct: 176 APADFEAVKNALEAAGLKPEV-AGVTMRAENTIELSGDDAEKMQKLLDVIEDLDDVQDVY 234
>gi|334337150|ref|YP_004542302.1| hypothetical protein Isova_1656 [Isoptericola variabilis 225]
gi|334107518|gb|AEG44408.1| UPF0082 protein yeeN [Isoptericola variabilis 225]
Length = 252
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 133/241 (55%), Gaps = 20/241 (8%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++++ K + A + GG +P N L ++KAK+ VP D +ER +KR
Sbjct: 13 KKAAIDAKRGKLFAKLIKNIEVAARTGGGDPAGNPTLFDAIQKAKKSSVPNDNIERAVKR 72
Query: 146 ASEKGQEA--FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S +G +A + +YE YG G++++VE LTD R+ A VR GG +ADPGSV
Sbjct: 73 GSGEGADAVDYQTIMYEGYGNNGIAVLVECLTDNKNRAAAEVRTAFSRNGGSLADPGSVS 132
Query: 204 FKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
+ F R +V + +D +D ++ ALDAGAE+V TDE +V+ +
Sbjct: 133 YLFSRKGLVVVPKSDGVTEDDVMLAALDAGAEEV---------TDEGEV---IEVLCEAT 180
Query: 263 NYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ + T ++EAGI +++ ++++ P +EVD E LI L + DDV VY
Sbjct: 181 DLVAVRTAIQEAGIEYDS---ADVIWHPSMEVEVDVEGARKITRLIDALEDSDDVQNVYA 237
Query: 321 D 321
+
Sbjct: 238 N 238
>gi|90961399|ref|YP_535315.1| hypothetical protein LSL_0422 [Lactobacillus salivarius UCC118]
gi|119391998|sp|Q1WUV3.1|Y422_LACS1 RecName: Full=Probable transcriptional regulatory protein LSL_0422
gi|90820593|gb|ABD99232.1| Conserved hypothetical protein [Lactobacillus salivarius UCC118]
Length = 242
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 128/241 (53%), Gaps = 18/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ K GGP+P N L +++KA+ ++PKD ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKISREIYMVAKSGGPDPDGNPQLRLIMDKARAANMPKDNIKRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
I +A+ G + E YE YG GV+I+V LTD R+ +AVR GG + + GSV
Sbjct: 70 IDKATGTGGADYEEITYEGYGPAGVAILVHALTDNRNRTASAVRADFNRNGGNLGETGSV 129
Query: 203 MFKFRRARVVNIKFTD--ADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
F F R + I D D+DQ+ + ++AG ED+ ++ +++ +
Sbjct: 130 SFMFDRKGYIAIAREDLEVDEDQMFEDVIEAGGEDL------------QTSDEVFEIYTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ D+ +L++ ++ ++P T+ V + +E + LI +L + DDV VY
Sbjct: 178 PKAFADVRDELQKK---YDLATAELTMVPQNTVPVPADKVEQLQRLIDRLEDEDDVSEVY 234
Query: 320 T 320
T
Sbjct: 235 T 235
>gi|418576904|ref|ZP_13141036.1| hypothetical protein SSME_20920 [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
gi|379324569|gb|EHY91715.1| hypothetical protein SSME_20920 [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
Length = 238
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 123/246 (50%), Gaps = 16/246 (6%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K +D +++Y++ GKE+ A K G P+P SN L LE+AK VP
Sbjct: 1 MGRKWNNIKEKKAQKDKNTSRIYAKFGKEIYVAAKSGEPDPESNQALRLTLERAKTYSVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
I+E+ I++A G+E + E YE +G G I+V+ LTD + R+ + VR GG
Sbjct: 61 NHIIEKAIEKAKGSGEENYDELRYEGFGPSGSMIIVDALTDNVNRTASDVRAAFGKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNED-DTDEDRAERY 254
M GSV + F V I+ D A+D++E + +D D + E
Sbjct: 121 MGVSGSVAYMFEYTAVFGIE--------------DKSADDILEALMEQDIDVRDVIDENG 166
Query: 255 YKVV-STSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELD 313
+V + D + + LRE G+ E+LP T IE+ E E + L+ L +LD
Sbjct: 167 LTIVYAEPDQFAQVQDALRETGVDTFKVAEFEMLPQTDIELSAEDQETFETLVEALEDLD 226
Query: 314 DVDAVY 319
DV V+
Sbjct: 227 DVQNVF 232
>gi|381188716|ref|ZP_09896276.1| hypothetical protein HJ01_02797 [Flavobacterium frigoris PS1]
gi|379649354|gb|EIA07929.1| hypothetical protein HJ01_02797 [Flavobacterium frigoris PS1]
Length = 237
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 128/244 (52%), Gaps = 13/244 (5%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR GRK + + AK ++R+GK+++ AVK+GGPNP +N+ L AV++ +K ++P
Sbjct: 1 MGRAFEFRKGRKMKRWSAMAKAFTRIGKDIVMAVKEGGPNPEANSRLRAVIQNSKAANMP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K+ VER IK+A++K + E ++E Y G++++VE TD R+VA VR C G
Sbjct: 61 KENVERAIKKATDKDTANYKEVLFEGYAPHGIALLVETATDNNNRTVANVRSFFNKCNGT 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
M GSV F F I D ++L +D GAE+V E DED Y
Sbjct: 121 MGTQGSVEFMFDHTCNFRIPAEGLDPEELELELIDFGAEEVFE--------DEDGILIYA 172
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
S + I +L G+ +G E +P T ++ + M ++LI KL E DDV
Sbjct: 173 PFAS----FGTIQKELENRGLEI-LSSGFERIPQITKKLTEAEMADVEKLIEKLEEDDDV 227
Query: 316 DAVY 319
VY
Sbjct: 228 MNVY 231
>gi|398331189|ref|ZP_10515894.1| hypothetical protein LalesM3_03919 [Leptospira alexanderi serovar
Manhao 3 str. L 60]
Length = 249
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 134/237 (56%), Gaps = 13/237 (5%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A D+K+ +++R+GKE+ A K GG +P N L + KAK +++PKD +ER I++
Sbjct: 13 KKDAIDSKRGAIFTRVGKEITVAAKMGGGDPEGNPRLRLAILKAKSVNMPKDNIERAIRK 72
Query: 146 ASEKGQEAFIEK-VYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMF 204
+ + + E+ +YE +G GG++I+V +TDK +R+ ++ ++ GG +A GSV
Sbjct: 73 GTGELEGVVYEECLYECFGSGGIAIMVSAVTDKKSRTTPEIKSILTKLGGSLATSGSVSR 132
Query: 205 KFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNY 264
F + V+ ++ + +D+L+D+A+ GAEDVI NE + Y+V++T D+Y
Sbjct: 133 LFEKKGVIVLESSQIGEDELVDLAVGGGAEDVI----NEGEV--------YRVITTPDDY 180
Query: 265 TDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ L E G+ E + +++ D E E +LI +L DDV +V ++
Sbjct: 181 ESVLHALNEKGLKSEESEIRYIALVSSEIADKEVAEKVMKLIEQLDGHDDVTSVTSN 237
>gi|220932072|ref|YP_002508980.1| hypothetical protein Hore_12350 [Halothermothrix orenii H 168]
gi|259645757|sp|B8CXG6.1|Y1235_HALOH RecName: Full=Probable transcriptional regulatory protein
Hore_12350
gi|219993382|gb|ACL69985.1| conserved hypothetical protein TIGR01033 [Halothermothrix orenii H
168]
Length = 253
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 140/245 (57%), Gaps = 17/245 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +K +D K+ KL+S++ K + A ++GG +P N L ++KAK+ ++P D +E
Sbjct: 8 ANIKHKKAKEDRKRGKLFSKLSKMITVAAREGGGDPEMNPDLRLAIQKAKDNNMPNDNIE 67
Query: 141 RNIKRASEKGQEAFIEK-VYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IKR + + + EK VYE YG GGV++ +E+++D R+ A +R V+ GG + +
Sbjct: 68 RAIKRGTGELEGVKYEKFVYEGYGPGGVALYLELMSDNRNRTAAEIRHVLSKNGGNLGES 127
Query: 200 GSV--MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G V MFK R +V++ +D D+D+L+ AL+AGAEDV V ED+ +
Sbjct: 128 GCVSWMFKRRGQLIVDLNESDFDEDELMLEALEAGAEDV----VTEDN--------LLTI 175
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELN-KELIAKLLELDDVD 316
+ ++ ++ +L E GI F + + + ++P + VDD++ +L+ L + DDV
Sbjct: 176 YTDPSDFEEVRKQLEEQGIKFSSADIA-MVPENNVNVDDKSTAKKVLKLMDALEDHDDVQ 234
Query: 317 AVYTD 321
VY++
Sbjct: 235 EVYSN 239
>gi|56380971|dbj|BAD76879.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
Length = 252
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 136/242 (56%), Gaps = 20/242 (8%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RK AQDAK+ KL+ ++ KE+ A K GG +P SN L V+EKAK ++P + +ER
Sbjct: 16 IQRRKNAQDAKRGKLFMKLAKEIYVAAKSGGGDPASNPSLRLVIEKAKAANMPSENIERA 75
Query: 143 IKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+A+ + E++ YE YG GGV+++V LTD R+ A VR GG + + G
Sbjct: 76 IKKATGTQEHTNYEEIRYEGYGPGGVAVMVVCLTDNKNRTAANVRAAFAKNGGNLGETGC 135
Query: 202 VMFKFRRA--RVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
V + F R V++ + + D+D+LL +A++AGAE++ + TDE +++ +
Sbjct: 136 VSYLFERKGLLVIDREQHNVDEDELLLLAIEAGAEEM-------ETTDES-----FEIYT 183
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLP--ITTIEVDDEAMELNKELIAKLLELDDVDA 317
+++ + +L + G F + + ++P TT+E DD L +LI L + DDV
Sbjct: 184 APESFETVKDELEQQGFTFASAEIT-MIPQTYTTLEGDDLKKML--KLIDTLEDDDDVQE 240
Query: 318 VY 319
VY
Sbjct: 241 VY 242
>gi|108761477|ref|YP_633130.1| hypothetical protein MXAN_4974 [Myxococcus xanthus DK 1622]
gi|118574376|sp|Q1D2J3.1|Y4974_MYXXD RecName: Full=Probable transcriptional regulatory protein MXAN_4974
gi|108465357|gb|ABF90542.1| conserved hypothetical protein TIGR01033 [Myxococcus xanthus DK
1622]
Length = 249
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 88/244 (36%), Positives = 138/244 (56%), Gaps = 14/244 (5%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
R SKI +K A A K KLYS++ KE+ A + GG P+ N L L A+E ++PKD
Sbjct: 6 RWSKIKRQKAAMGATKGKLYSKVVKEITVASRLGGGEPSGNARLRVALAAAREANIPKDT 65
Query: 139 VERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ER IK+ + E E + E YE YG GGV+I+VE LTD R+ A +R GG +
Sbjct: 66 IERAIKKGTGELEGENYEEVTYEGYGPGGVAILVECLTDNRNRTAADMRSTFSAYGGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G+V + F++ V+++K+ ++ DQL++ A+DAGAEDVI + D+ E R
Sbjct: 126 AEGAVAWMFQKKGVISVKYGPSE-DQLMEQAIDAGAEDVI---MLGDEGSEVR------- 174
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ +D +T + +L+E+G+P LP T+ +D + ++ +L+ L E DDV
Sbjct: 175 TAAADLHT-VAGRLQESGLPLGQQRWV-FLPQNTVALDVDTVKKLLKLLDALEENDDVQN 232
Query: 318 VYTD 321
V+ +
Sbjct: 233 VHGN 236
>gi|51246760|ref|YP_066644.1| hypothetical protein DP2908 [Desulfotalea psychrophila LSv54]
gi|60390894|sp|Q6AJ43.1|Y2908_DESPS RecName: Full=Probable transcriptional regulatory protein DP2908
gi|50877797|emb|CAG37637.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
Length = 250
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 133/243 (54%), Gaps = 15/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
S I +KGA DAK+ K+++R+ KE+ A + GG +P N L + + AK ++PKD +
Sbjct: 8 STIKRKKGANDAKRGKIFTRLIKEITVAARGGGGDPEGNPRLRSAILVAKSENMPKDNIT 67
Query: 141 RNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+ + E E + E +YE YG GGV+++VE +TD R+VA +R G + +
Sbjct: 68 RAIKKGTGEIAGEVYDEILYEGYGPGGVAVLVECMTDNRNRTVADIRHYFAKNNGNLGEA 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
G V + F + ++ + +D+L+D AL+AGAEDV+ ED+T+ ++V++
Sbjct: 128 GCVSWMFEKKGLILVDKATITEDELMDQALEAGAEDVV-----EDETE-------FQVLT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELN-KELIAKLLELDDVDAV 318
+ + AGI F D +LP ++V DE + N L+ L + DDV V
Sbjct: 176 NPTELDAVRGAMEAAGIAF-VDASISMLPKNVVDVTDEKVGKNLLRLLESLEDHDDVQNV 234
Query: 319 YTD 321
+++
Sbjct: 235 HSN 237
>gi|225164120|ref|ZP_03726400.1| protein of unknown function DUF28 [Diplosphaera colitermitum TAV2]
gi|224801255|gb|EEG19571.1| protein of unknown function DUF28 [Diplosphaera colitermitum TAV2]
Length = 240
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 132/245 (53%), Gaps = 18/245 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+K+ +K D++K K++SR+ +++ A K GG +P N L +L KA+E ++P D ++
Sbjct: 8 AKVKRQKAITDSRKGKVFSRLSRDITLAAKAGGGDPEGNARLRTLLLKAREANMPVDNID 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+ + + E + YE YG GGV+ +V+V TD TRS VR V GG +A
Sbjct: 68 RAIKKGTGELPGVVYEDITYEAYGPGGVAFIVKVTTDNKTRSAQEVRSVFARHGGNLAST 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
G+V F+F A I +D L+++ALDAGA+DV+ +E ++V
Sbjct: 128 GAVAFQFTHAGQFLIASDQTTEDALMEVALDAGADDVLT------------SEHGFEVRC 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ + T L +AGI E+ +EL +P T+ VD ++L L E+DDV
Sbjct: 176 DVHVFDKVLTALDKAGIKTES---AELAYIPTNTVPVDASVASGIEKLHDALDEIDDVQH 232
Query: 318 VYTDQ 322
V++++
Sbjct: 233 VFSNE 237
>gi|453382577|dbj|GAC82872.1| putative transcriptional regulator [Gordonia paraffinivorans NBRC
108238]
Length = 251
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 125/238 (52%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K DAK+ K+++++ K + A + GG +P N L ++KAK+ VP D +ER KR
Sbjct: 13 KKAVIDAKRGKMFAKLIKNIEVAARTGGGDPAGNPTLFDAIQKAKKSSVPNDNIERARKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
+ E G + +YE YG GV+I++E LTD R+ VR + GG MADPGSV
Sbjct: 73 GAGEEAGGADWQTIMYEGYGPNGVAILIECLTDNRNRAAGEVRTAMSRNGGSMADPGSVS 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R VV ++ +D +L LDAGAE+V D E +++VS +
Sbjct: 133 YLFARKGVVTLEKNGQTEDDILMAVLDAGAEEVT-----------DLGES-FEIVSEPGD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ T L+EAGI +++ S P + VD + +LI L + DDV VY++
Sbjct: 181 LVAVRTALQEAGIDYDSAEAS-FRPSVEVAVDADGARKVFKLIDALEDCDDVQNVYSN 237
>gi|16079834|ref|NP_390660.1| hypothetical protein BSU27820 [Bacillus subtilis subsp. subtilis
str. 168]
gi|221315046|ref|ZP_03596851.1| hypothetical protein BsubsN3_15117 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221319966|ref|ZP_03601260.1| hypothetical protein BsubsJ_15033 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|402776938|ref|YP_006630882.1| protein YrbC [Bacillus subtilis QB928]
gi|452915573|ref|ZP_21964199.1| DNA-binding regulatory , YebC/PmpR family protein [Bacillus
subtilis MB73/2]
gi|6226494|sp|P94447.2|YRBC_BACSU RecName: Full=Probable transcriptional regulatory protein YrbC
gi|2635247|emb|CAB14742.1| conserved hypothetical protein [Bacillus subtilis subsp. subtilis
str. 168]
gi|6977799|emb|CAB75324.1| hypothetical protein [Bacillus subtilis subsp. subtilis str. 168]
gi|402482118|gb|AFQ58627.1| YrbC [Bacillus subtilis QB928]
gi|407959977|dbj|BAM53217.1| hypothetical protein BEST7613_4286 [Bacillus subtilis BEST7613]
gi|407965620|dbj|BAM58859.1| hypothetical protein BEST7003_2658 [Bacillus subtilis BEST7003]
gi|452115921|gb|EME06317.1| DNA-binding regulatory , YebC/PmpR family protein [Bacillus
subtilis MB73/2]
Length = 240
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 136/243 (55%), Gaps = 19/243 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RK AQDAK+ K++ ++ KE+ A K+GG +P +N+ L V+EKAK ++P + ++R
Sbjct: 10 IQKRKNAQDAKRGKIFMKLAKEIYVAAKEGGADPEANSALRLVIEKAKGANMPNENIDRA 69
Query: 143 IKRASEKGQE--AFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
IK+A+ GQ+ ++ E YE YG G++++VE +TD R+ + VR GG + + G
Sbjct: 70 IKKAA-GGQDGSSYEEITYEGYGPSGIAVMVECVTDNKNRTASNVRTAFNKNGGSLGESG 128
Query: 201 SVMFKFRRARVVNIKFTD--ADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
V F F R + I T+ ++D+L+ L+AG E++ + ED Y+V
Sbjct: 129 CVAFLFERKGFITIDRTERQIEEDELMLDVLEAGGEEL---RIEED---------LYEVF 176
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+ +++ ++ T L + + +LP T E DD+A+E + LI L + DDV V
Sbjct: 177 TEPEHFEEVKTALESKYLISSAE--VTMLPNTYAEADDQAVEKLETLIDVLEDDDDVQEV 234
Query: 319 YTD 321
YT+
Sbjct: 235 YTN 237
>gi|240016985|ref|ZP_04723525.1| hypothetical protein NgonFA_07427 [Neisseria gonorrhoeae FA6140]
gi|268601724|ref|ZP_06135891.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|268585855|gb|EEZ50531.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
Length = 242
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 137/252 (54%), Gaps = 30/252 (11%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +K QDAK+ K+++R+ KE+ A + GG +P +N L LEKA E ++PKD V+
Sbjct: 8 ANIQHKKARQDAKRGKIFTRLIKEITVAARMGGGDPGANPRLRLALEKAAENNMPKDNVQ 67
Query: 141 RNIKRASE--KGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMAD 198
R I + + +G E +IE YE YG GG +++V+ LTD TR+VA VR GG +
Sbjct: 68 RAIDKGTGNLEGVE-YIELRYEGYGIGGAALMVDCLTDNKTRTVADVRHAFTKNGGNLGT 126
Query: 199 PGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
G V F F + + D+D+L++ AL+AGAEDV+ N+D + E V+
Sbjct: 127 DGCVAFNFVHQGYLVFE-PGVDEDELMEAALEAGAEDVV---TNDDGSIE--------VI 174
Query: 259 STSDNYTDITTKLREAG-------IPFETDNGSELLPITTIEVDDEAMELNKELIAKLLE 311
+ +++ + + L AG + T N +EL D+A+++ K LI L +
Sbjct: 175 TAPNDWAGVKSALEAAGYKSVDGDVTMRTQNETEL-------SGDDAVKMQK-LIDALED 226
Query: 312 LDDVDAVYTDQI 323
LDDV VYT +
Sbjct: 227 LDDVQDVYTSAV 238
>gi|400974682|ref|ZP_10801913.1| hypothetical protein SPAM21_01885 [Salinibacterium sp. PAMC 21357]
Length = 252
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 134/239 (56%), Gaps = 16/239 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K D+++AK ++++ K + A K GG + + N L ++KAK+ VP D ++R +KR
Sbjct: 13 KKAITDSRRAKSFAKLIKNIEVAAKIGGADLSGNPTLVDAIQKAKKTSVPNDNIDRAVKR 72
Query: 146 ASEKGQEA--FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S + +A ++ +YE YG GV+++VE LTD R+ A VR ++ GG +ADPGSV
Sbjct: 73 GSGQLGDAIEYLNIMYEGYGPNGVALLVECLTDNKNRAAADVRTIMSRNGGSLADPGSVA 132
Query: 204 FKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
+ F R V++I T+ +D +L LDAGAE+V +D E ++V++ +
Sbjct: 133 YNFERKGVISITKTEGVTEDDILLAVLDAGAEEV-----------KDHGEG-FEVITDTA 180
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ + L+ AGI ++ +E +P TIEVD + LI L E DDV +Y++
Sbjct: 181 HLVESRDALQAAGIDYDASE-AEFVPNLTIEVDADTARKVLRLIEALEESDDVQNIYSN 238
>gi|418032038|ref|ZP_12670521.1| hypothetical protein BSSC8_14650 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|351470901|gb|EHA31022.1| hypothetical protein BSSC8_14650 [Bacillus subtilis subsp. subtilis
str. SC-8]
Length = 251
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 136/243 (55%), Gaps = 19/243 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RK AQDAK+ K++ ++ KE+ A K+GG +P +N+ L V+EKAK ++P + ++R
Sbjct: 21 IQKRKNAQDAKRGKIFMKLAKEIYVAAKEGGADPEANSALRLVIEKAKGANMPNENIDRA 80
Query: 143 IKRASEKGQE--AFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
IK+A+ GQ+ ++ E YE YG G++++VE +TD R+ + VR GG + + G
Sbjct: 81 IKKAA-GGQDGSSYEEITYEGYGPSGIAVMVECVTDNKNRTASNVRTAFNKNGGSLGESG 139
Query: 201 SVMFKFRRARVVNIKFTD--ADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
V F F R + I T+ ++D+L+ L+AG E++ + ED Y+V
Sbjct: 140 CVAFLFERKGFITIDRTERQIEEDELMLDVLEAGGEEL---RIEED---------LYEVF 187
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+ +++ ++ T L + + +LP T E DD+A+E + LI L + DDV V
Sbjct: 188 TEPEHFEEVKTALESKYLISSAE--VTMLPNTYAEADDQAVEKLETLIDVLEDDDDVQEV 245
Query: 319 YTD 321
YT+
Sbjct: 246 YTN 248
>gi|417095535|ref|ZP_11958370.1| hypothetical protein RHECNPAF_13006 [Rhizobium etli CNPAF512]
gi|327194141|gb|EGE61011.1| hypothetical protein RHECNPAF_13006 [Rhizobium etli CNPAF512]
Length = 238
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 128/236 (54%), Gaps = 13/236 (5%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
RKG QDA ++K++S++ +E+ A K G P+PT N L ++ AK +PKD ++R IK+
Sbjct: 3 RKGRQDAVRSKMFSKLAREITVAAKAGLPDPTMNARLRLAIQNAKAQSMPKDNIDRAIKK 62
Query: 146 ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 205
A+ E + E YE YG GG +I+VE LTD R+ + VR + GG + + GSV F
Sbjct: 63 AAGADGENYDEVRYEGYGPGGTAIIVEALTDNRNRTASNVRSIFTKAGGALGETGSVSFS 122
Query: 206 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 265
F + K + D D++++ A++AGA+DV +TDE E +Y + +
Sbjct: 123 FDHVGEITYKLSVGDADKVMEAAIEAGADDV--------ETDE---EGHY-ITCAFEALG 170
Query: 266 DITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
D++ L E+G+ + + VD+E + +LI L + DDV VY++
Sbjct: 171 DVSKAL-ESGLGEAETVKAVWRAQNNVPVDEEKAQSLMKLIDSLEDDDDVQNVYSN 225
>gi|433772676|ref|YP_007303143.1| DNA-binding regulatory protein, YebC/PmpR family [Mesorhizobium
australicum WSM2073]
gi|433664691|gb|AGB43767.1| DNA-binding regulatory protein, YebC/PmpR family [Mesorhizobium
australicum WSM2073]
Length = 249
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 126/239 (52%), Gaps = 13/239 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++S++ +E+ A K G P+P+ N L ++ AK + +PKD ++R
Sbjct: 10 IMHRKGRQDAVRSKMFSKLAREITVAAKSGTPDPSMNPRLRLAIQNAKAVSMPKDNIQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
I +AS E + YE YG GGV+++VE LTD RS + VR GG + + GSV
Sbjct: 70 INKASMGDAENYEAVRYEGYGPGGVAVIVEALTDNRNRSASNVRAAFTKAGGALGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F + RA + + D+++D A++AGA+DV ++DE+ Y + +
Sbjct: 130 SFMWDRAGEIYYPASAGSADKIMDAAIEAGADDV--------ESDEEGHTIYCSFETLGE 181
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ T L EA + P + VD+E + +L+A L + DDV +VY +
Sbjct: 182 VSKALETSLGEA-----ESVKAIWKPQNNVPVDEERAQSLMKLVATLEDDDDVQSVYAN 235
>gi|254467141|ref|ZP_05080552.1| conserved hypothetical protein TIGR01033 [Rhodobacterales bacterium
Y4I]
gi|206688049|gb|EDZ48531.1| conserved hypothetical protein TIGR01033 [Rhodobacterales bacterium
Y4I]
Length = 268
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 125/241 (51%), Gaps = 13/241 (5%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKG QDA ++KL+S++ KE+ A K G P+P N L +++AK VPKD++E
Sbjct: 30 ANIQHRKGRQDAARSKLFSKLAKEITVAAKMGDPDPDKNPRLRLAVKEAKSQSVPKDVIE 89
Query: 141 RNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
R IK+A E + E YE YG GV+++VE +TD R+ + VR + GG + + G
Sbjct: 90 RAIKKAIGGDAENYDEIRYEGYGPAGVAVIVEAMTDNKNRTASNVRSIFGKNGGNLGETG 149
Query: 201 SVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
SV F F R V + D D ++ A++AGAEDV + +E + +
Sbjct: 150 SVGFMFDRKGEVTYPASVGDADTVMMAAIEAGAEDV------------ESSEDGHIIYCA 197
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ D++ L EA + P TT E+D + M+ +L+ L + DDV V T
Sbjct: 198 DTDLNDVSNAL-EAELGESESTKLVWKPTTTTELDLDGMQKLMKLVDALEDDDDVQRVTT 256
Query: 321 D 321
+
Sbjct: 257 N 257
>gi|407975337|ref|ZP_11156243.1| hypothetical protein NA8A_13545 [Nitratireductor indicus C115]
gi|407429422|gb|EKF42100.1| hypothetical protein NA8A_13545 [Nitratireductor indicus C115]
Length = 249
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 129/239 (53%), Gaps = 13/239 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++S++ +E+ A K G P+P N L ++ AK +PKD +ER
Sbjct: 10 IMHRKGRQDAVRSKMFSKLAREITVAAKAGLPDPAMNPRLRLAIQNAKAQSMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A+ E + E YE YG GGV+++VE LTD RS + +R GG + + GSV
Sbjct: 70 IKKAAGGDSENYEEVRYEGYGPGGVAVIVEALTDNRNRSASNIRAAFTKAGGSLGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R + + D D++++ A++AGAEDV +DE+ + ++ +
Sbjct: 130 SFMFDRVGEIVYPVSVGDADKVMEAAIEAGAEDV--------QSDENG----HVIICGFE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ ++T+ L A E+ + P T VD+E + +L+A L + DDV VY +
Sbjct: 178 DIGEVTSALETALGEAESVK-AIWRPQTGTPVDEERAQSILKLVATLEDDDDVQNVYAN 235
>gi|395785079|ref|ZP_10464813.1| UPF0082 protein [Bartonella tamiae Th239]
gi|395425591|gb|EJF91752.1| UPF0082 protein [Bartonella tamiae Th239]
Length = 248
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 126/239 (52%), Gaps = 13/239 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++S++ +E+ A K+G P+P N L ++ AK +PKD +ER
Sbjct: 10 IMHRKGRQDAMRSKMFSKLAREITVAAKQGAPDPAMNPRLRLAVQNAKSQSMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+AS E + E YE YG GV+++VE LTD R+ + VR GG + + GSV
Sbjct: 70 IKKASGGDAENYDEVRYEGYGPAGVAVIVEALTDNRNRTASNVRAAFTKSGGALGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R + K D D +++ A++AGAEDV +DE+ + ++ +
Sbjct: 130 GFMFNRVGEIIYKVDAGDNDTVMEAAIEAGAEDV--------QSDEEG----HVIICAFE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ +++ L A E+ + P T VD+E + LI+ L + DDV VY +
Sbjct: 178 DIGEVSKALETALGEAESIK-TVWKPTTGAAVDEEKAQSVLRLISTLEDDDDVQNVYAN 235
>gi|291550434|emb|CBL26696.1| conserved hypothetical protein TIGR01033 [Ruminococcus torques
L2-14]
Length = 243
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 118/202 (58%), Gaps = 16/202 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGG-PNPTSNTVLAAVLEKAKELDVPKDIV 139
+ I +K DA K K+++++G+E+ AVK+GG +PT+N+ L V+ KAK ++P D +
Sbjct: 8 ANIKHKKEKNDAAKGKIFTKIGRELAIAVKEGGSADPTNNSRLRDVIAKAKANNMPNDTI 67
Query: 140 ERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMAD 198
ERNIK+A+ +G E++ YE YG G +I+V+ LTD R+ + VR G +
Sbjct: 68 ERNIKKAAGEGTADNYERITYEGYGPNGTAIIVKTLTDNKNRTASNVRNAFTKGSGNVGT 127
Query: 199 PGSVMFKF--RRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
PG V F F + +++ + D D D L+ LDAGAED E E+D+ Y+
Sbjct: 128 PGCVSFMFDEKGQIIIDKEECDMDSDDLMMTVLDAGAEDFNE----EEDS--------YE 175
Query: 257 VVSTSDNYTDITTKLREAGIPF 278
V++ ++++D+ K+ EAGIP
Sbjct: 176 VLTAPEDFSDVRLKMEEAGIPM 197
>gi|311742328|ref|ZP_07716137.1| YebC like protein [Aeromicrobium marinum DSM 15272]
gi|311313956|gb|EFQ83864.1| YebC like protein [Aeromicrobium marinum DSM 15272]
Length = 252
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 130/242 (53%), Gaps = 19/242 (7%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ K+++++ K + A + GGP+P N L ++KAK+ VP D ++R +KR
Sbjct: 13 KKAAIDAKRGKMFAKLIKNIEVAARMGGPDPDGNPTLYDAIQKAKKSSVPNDNIDRAVKR 72
Query: 146 ASEKGQEA--FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
G +A +I +YE YG GV+++VE LTD R+ VR + GG MADPGSV
Sbjct: 73 GGGVGDDAVDYITIMYEGYGPNGVAMLVECLTDNRNRAAMEVRTAMTRNGGTMADPGSVS 132
Query: 204 FKFRRARVVNIKFTD----ADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
+ F R V+ + +D +L LDAGAE+V D E ++V+
Sbjct: 133 YMFARKGVIIVPAEQEGGATTEDDILLAVLDAGAEEV-----------NDHGES-FEVIC 180
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ + + T L++AG+ +++ + S +P +EVD + +LI L + DDV V+
Sbjct: 181 EATDLVAVRTALQDAGLDYDSADAS-FVPSVNVEVDVDGATKVLKLIDALEDCDDVQNVF 239
Query: 320 TD 321
+
Sbjct: 240 AN 241
>gi|374340585|ref|YP_005097321.1| YebC/PmpR family DNA-binding regulatory protein [Marinitoga
piezophila KA3]
gi|372102119|gb|AEX86023.1| DNA-binding regulatory protein, YebC/PmpR family [Marinitoga
piezophila KA3]
Length = 250
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 136/243 (55%), Gaps = 17/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAK++K+++++ +E+ A K+GG +P +N L +EKAK+ ++PKD +E
Sbjct: 8 ANIKHRKAAQDAKRSKIFTKLIRELTVAAKEGGDDPEANPRLRTAIEKAKDANMPKDKIE 67
Query: 141 RNIKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
IK+ A ++++E +YE YG GV+I++ LTD R+ VR ++ GG +A+
Sbjct: 68 AAIKKGAGGTDADSYVEIMYEGYGPAGVAIIMRALTDNKNRTAQEVRHILSKNGGSLAES 127
Query: 200 GSVMFKFRRARVVNI-KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
G+V + F R ++ + K AD D+ + ALDAGAEDVI ED+T +V+
Sbjct: 128 GAVAWNFERKAMITVPKEEVADLDEFMMEALDAGAEDVI-----EDET--------IQVI 174
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+ ++ + L++ G F +P T+++ E +LI L + DD+ V
Sbjct: 175 AAPEDMVQVRDTLKDKG--FTVKASLTYIPKNTVKIAGSDAEKMLKLIDALEDSDDIQEV 232
Query: 319 YTD 321
+ +
Sbjct: 233 FAN 235
>gi|297569181|ref|YP_003690525.1| protein of unknown function DUF28 [Desulfurivibrio alkaliphilus
AHT2]
gi|296925096|gb|ADH85906.1| protein of unknown function DUF28 [Desulfurivibrio alkaliphilus
AHT2]
Length = 249
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 135/244 (55%), Gaps = 17/244 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKGA DAK+ K+++R+ KE++ A + GG + N L + AK ++PKD +E
Sbjct: 8 ANIKHRKGAMDAKRGKIFTRLIKEIMVAARLGGGDIDGNPRLRTAVAAAKAENMPKDNIE 67
Query: 141 RNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+ + E A+ E YE YG GGV+++VE +TD R+VA VR + GG + +
Sbjct: 68 RAIKKGTGELEGVAYEEITYEGYGPGGVAVMVECMTDNRVRTVADVRFMFSKAGGNLGES 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
V + F R + ++ +D+L++ AL+AGAEDV+ E ++V++
Sbjct: 128 NCVSWMFDRKGQILVEREATSEDELMEAALEAGAEDVVVE------------ESTFQVLT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDE--AMELNKELIAKLLELDDVDA 317
D++ ++ L+ GI F + ++P T+EV DE A +L K L+ L + DDV
Sbjct: 176 EPDDFAAVSEALQAKGIAF-LEASIAMIPKNTVEVGDEQTARQLMK-LLDSLEDNDDVQH 233
Query: 318 VYTD 321
V+ +
Sbjct: 234 VHAN 237
>gi|183219483|ref|YP_001837479.1| hypothetical protein LEPBI_I0056 [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|189909626|ref|YP_001961181.1| hypothetical protein LBF_0056 [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|226734028|sp|B0S959.1|Y056_LEPBA RecName: Full=Probable transcriptional regulatory protein LBF_0056
gi|226734029|sp|B0SJP0.1|Y056_LEPBP RecName: Full=Probable transcriptional regulatory protein
LEPBI_I0056
gi|167774302|gb|ABZ92603.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|167777905|gb|ABZ96203.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 247
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 134/239 (56%), Gaps = 17/239 (7%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+KGA DAK+ +++R+ KE+ A K+GG + N L + KAK ++PKD +ER IK+
Sbjct: 13 KKGAIDAKRGAIFTRIAKEISVAAKEGGGDQEGNPRLRLAVTKAKAANMPKDNIERAIKK 72
Query: 146 ASEKGQEAFI--EKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
+ G E + E +YE Y GGV+I+V+VLTDK +R+ ++ ++ GG +A+ G+V
Sbjct: 73 GT-GGLEGMVYEECLYECYAPGGVAIMVDVLTDKKSRTTPEIKSILTKLGGSLANAGAVS 131
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
F R + +K ++ L D+AL AGAED+ VN+ Y V+++
Sbjct: 132 RLFERKGQLTLKADQISEEALFDLALGAGAEDI---QVNDG---------MYVVLTSPSE 179
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDD-EAMELNKELIAKLLELDDVDAVYTD 321
Y + + L G+ E ++ + +P+TT+EV++ E E +LI L DDV V ++
Sbjct: 180 YEAVQSALSSKGLNME-ESEIKYIPMTTVEVNEKETAEKVMKLIENLEANDDVQGVSSN 237
>gi|238063855|ref|ZP_04608564.1| hypothetical protein MCAG_04821 [Micromonospora sp. ATCC 39149]
gi|237885666|gb|EEP74494.1| hypothetical protein MCAG_04821 [Micromonospora sp. ATCC 39149]
Length = 249
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 129/238 (54%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K DAK+ K+++++ K V A + GG +P N L ++KAK+ VP D ++R +KR
Sbjct: 13 KKAVIDAKRGKMFAKLIKNVEVAARTGGGDPAGNPTLYDAIQKAKKNSVPNDNIDRAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S E G + +YE YG GV++++E LTD R+ VR + GG +AD GSV
Sbjct: 73 GSGLEAGGADWQTIMYEGYGPNGVAMLIECLTDNRNRAATEVRTALTRNGGSLADAGSVS 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R VV + +D ++ LDAGAE+V +D E Y+V+S + +
Sbjct: 133 YMFSRKGVVIVPKAGTSEDDVMMAVLDAGAEEV-------NDLGE-----AYEVISEATD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ T L++AGI +E+ S L+P +++D++ +LI L + DDV VY +
Sbjct: 181 LIAVRTALQDAGIEYESAE-SSLIPSMNVQLDEDGARKVFKLIDVLEDCDDVQNVYAN 237
>gi|340357232|ref|ZP_08679854.1| glucose-1-phosphate adenylyltransferase [Sporosarcina newyorkensis
2681]
gi|339617999|gb|EGQ22602.1| glucose-1-phosphate adenylyltransferase [Sporosarcina newyorkensis
2681]
Length = 240
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 129/242 (53%), Gaps = 21/242 (8%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKGAQDAK+ K++ +M +E+ A K GG +P +N L ++K+K +VP D+++R
Sbjct: 10 IQNRKGAQDAKRGKIFQKMSREIYVAAKSGGDDPDTNPALRLAIDKSKSANVPNDVIQRA 69
Query: 143 IKRASEKG-QEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
I +A+ G E + E +YE YG GGV+++V LT+ R+ +R GG + + GS
Sbjct: 70 IDKATGAGADENYEEVIYEGYGPGGVAVLVYCLTENRNRTGPNIRVAFNKNGGSLGESGS 129
Query: 202 VMFKF-RRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
V + F R+ R+ + + D+D ++ +AL+AGAED++ E +++++
Sbjct: 130 VNYLFERKGRLFIERTAEIDEDAIMLLALEAGAEDIL------------STEDGFEILTE 177
Query: 261 SDNYTDITTKLREAGIPF---ETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ + L F E D ++P E+ DE E +++I L + DDV
Sbjct: 178 PSEFLTVKEALEAEAFTFVSAEVD----MVPSVYAELSDEQEEQFEKMIDTLEDDDDVQN 233
Query: 318 VY 319
VY
Sbjct: 234 VY 235
>gi|297529243|ref|YP_003670518.1| hypothetical protein GC56T3_0898 [Geobacillus sp. C56-T3]
gi|297252495|gb|ADI25941.1| protein of unknown function DUF28 [Geobacillus sp. C56-T3]
Length = 246
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 136/242 (56%), Gaps = 20/242 (8%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RK AQDAK+ KL+ ++ KE+ A K GG +P SN L V+EKAK ++P + +ER
Sbjct: 10 IQRRKNAQDAKRGKLFMKLAKEIYVAAKSGGGDPASNPSLRLVIEKAKAANMPSENIERA 69
Query: 143 IKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+A+ + E++ YE YG GGV+++V LTD R+ A VR GG + + G
Sbjct: 70 IKKATGTQEHTNYEEIRYEGYGPGGVAVMVVCLTDNKNRTAANVRAAFSKNGGNLGETGC 129
Query: 202 VMFKFRRA--RVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
V + F R V++ + + D+D+LL +A++AGAE++ + TDE +++ +
Sbjct: 130 VSYLFERKGLLVIDREQHNVDEDELLLLAIEAGAEEM-------ETTDES-----FEIYT 177
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLP--ITTIEVDDEAMELNKELIAKLLELDDVDA 317
+++ + +L + G F + + ++P TT+E DD L +LI L + DDV
Sbjct: 178 APESFETVKDELEQQGFTFASAEIT-MIPQTYTTLEGDDLKKML--KLIDTLEDDDDVQE 234
Query: 318 VY 319
VY
Sbjct: 235 VY 236
>gi|289578206|ref|YP_003476833.1| hypothetical protein Thit_1001 [Thermoanaerobacter italicus Ab9]
gi|297544487|ref|YP_003676789.1| hypothetical protein Tmath_1058 [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|289527919|gb|ADD02271.1| protein of unknown function DUF28 [Thermoanaerobacter italicus Ab9]
gi|296842262|gb|ADH60778.1| protein of unknown function DUF28 [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 246
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 135/241 (56%), Gaps = 15/241 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +K DAKK ++++++ K++I A K+GG +P +N+ L +EKAK ++P + ++
Sbjct: 8 ANIKHKKEKMDAKKGRIFTKLTKDIIKAAKEGGGDPNTNSKLRDAIEKAKANNLPNENIQ 67
Query: 141 RNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+ + E G E +YE YG G +I+VE LTD R+ +R + GG +
Sbjct: 68 RAIKKGTGELGGANLEEVIYEGYGPAGTAIIVEALTDNKNRTAGEIRHIFDRNGGSLGAA 127
Query: 200 GSVMFKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
GSV + F + ++ ++ D+ D+++L +A+DAGAED + ED ++++
Sbjct: 128 GSVTWMFDKVGIITVRKDDSIDEEELAMVAIDAGAEDF---------SAEDEE---FEII 175
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+ N+ ++ + +AG ++ +LP TI++ E + ++LI KL E DDV V
Sbjct: 176 TEPSNFQEVKEAIEKAGYKI-SEAEVTMLPKNTIQLSPEDYQKFEKLIDKLEENDDVQNV 234
Query: 319 Y 319
Y
Sbjct: 235 Y 235
>gi|389796249|ref|ZP_10199305.1| hypothetical protein UUC_01030 [Rhodanobacter sp. 116-2]
gi|388448889|gb|EIM04869.1| hypothetical protein UUC_01030 [Rhodanobacter sp. 116-2]
Length = 242
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 137/246 (55%), Gaps = 17/246 (6%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR S I GRK A+DA++AK+++++ +E+ A + G +P N L A ++KA ++
Sbjct: 1 MGRGPS-IEGRKNAEDARRAKVFTKLIREITVATRSGVADPGGNPRLRAAIDKALSANMT 59
Query: 136 KDIVERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGG 194
KD +ER IKR S A ++++ YE YG G+++++E TD TR+VA VR + GG
Sbjct: 60 KDTIERAIKRGSGTDGGADMQELRYEGYGPAGIALIIECFTDNPTRTVADVRYALTKHGG 119
Query: 195 KMADPGSVMFKFRRARVVNIKFTD--ADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAE 252
+ GSV F+F R + D A ++++L+ AL+AGA+DVI NE
Sbjct: 120 NLGTSGSVAFQFTRCGELVFATGDDAAAEEKVLEAALEAGADDVI----NEHGES----- 170
Query: 253 RYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLEL 312
V+ T +++ + L AG+ + G + P +EV +EA+E +L+ KL L
Sbjct: 171 ---TVLCTPESFEAVQQGLIAAGLNAQ-HAGVVMRPNNRVEVPEEALEQLLDLLEKLDAL 226
Query: 313 DDVDAV 318
DDV V
Sbjct: 227 DDVSEV 232
>gi|416506329|ref|ZP_11734547.1| hypothetical protein SEEM031_02107 [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|416519806|ref|ZP_11740073.1| hypothetical protein SEEM710_10914 [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|416563975|ref|ZP_11763035.1| hypothetical protein SEEM42N_05603 [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|416569197|ref|ZP_11765385.1| hypothetical protein SEEM41H_11966 [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|363554927|gb|EHL39159.1| hypothetical protein SEEM031_02107 [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|363557088|gb|EHL41297.1| hypothetical protein SEEM710_10914 [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|363571519|gb|EHL55430.1| hypothetical protein SEEM42N_05603 [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|363577204|gb|EHL61030.1| hypothetical protein SEEM41H_11966 [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
Length = 238
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 132/244 (54%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ +A K+G P+P SN+ L V+E+AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGATSKVYAKFGVEIYAAAKQGEPDPESNSALKFVIERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A G E F++ YE +G G ++ E LT + R++A +R + GG
Sbjct: 61 KHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMVIAETLTSNVNRTIANIRTIFNKKGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ G+V + F V+ K T D D + +I LDA DV D T+E+ + Y
Sbjct: 121 IGAAGAVSYMFDNTGVIVFKGT--DPDHIFEILLDAEV-DV------RDVTEEEGSIVIY 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+D + I L+ AGI + E++ + +E+ E +E+ + L+ L + DDV
Sbjct: 172 --TEATDLHKGIAA-LKAAGITEFSTTELEMIAQSEVELSPEDLEIFEGLVDALEDDDDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QKVY 232
>gi|158422134|ref|YP_001523426.1| hypothetical protein AZC_0510 [Azorhizobium caulinodans ORS 571]
gi|172048034|sp|A8IM90.1|Y510_AZOC5 RecName: Full=Probable transcriptional regulatory protein AZC_0510
gi|158329023|dbj|BAF86508.1| uncharacterized protein AZC_0510 [Azorhizobium caulinodans ORS 571]
Length = 248
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 126/243 (51%), Gaps = 27/243 (11%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++KL+S++ +E+ A K G P+P N L A + A+ ++PKD +ER
Sbjct: 10 IMHRKGRQDAVRSKLFSKLAREITVAAKMGLPDPNMNARLRAAILAARAENMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+AS E + E YE YG GGV+++VE LTD R+ + VR GG +A+ G+V
Sbjct: 70 IKKASGADMENYDEIRYEGYGPGGVAVIVEALTDNRNRTASEVRSYFTKSGGNLAETGAV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R + + D LL+ A++AGA+DV + +E ++VV +
Sbjct: 130 SFMFDRLGAIEFDAAKVNADDLLEAAIEAGADDV------------NSSEETHEVVCAVE 177
Query: 263 NYTDITTKL-------REAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+ ++ L R+AG+ + P TI VDDE E L+ L + DDV
Sbjct: 178 SLAEVQKALEAKFGEPRKAGLVWR--------PQNTIAVDDETGEKLMRLVETLEDNDDV 229
Query: 316 DAV 318
V
Sbjct: 230 QNV 232
>gi|88705603|ref|ZP_01103313.1| protein containing DUF28 [Congregibacter litoralis KT71]
gi|88700116|gb|EAQ97225.1| protein containing DUF28 [Congregibacter litoralis KT71]
Length = 248
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 135/244 (55%), Gaps = 18/244 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAK+ K+++++ +E++ A K+GGP P N L A ++KA ++ +D ++
Sbjct: 8 ANIKHRKAAQDAKRGKMFTKLIRELVVAAKQGGPLPEDNPRLRAAVDKALGSNMTRDTID 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I R + + +E++ YE Y GGV+++VEV+TD R+VA VR GG +
Sbjct: 68 RAIARGAGNNEADDVEELTYEGYAPGGVAVLVEVMTDNRNRTVAEVRHAFSKRGGNLGTD 127
Query: 200 GSVMFKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
GSV + F R I F D++Q+++ AL+AGAEDV E + +V
Sbjct: 128 GSVAYLFERKG--QISFAPGTDEEQVMEAALEAGAEDV-----------EAADDGSIEVT 174
Query: 259 STSDNYTDITTKLREAGI-PFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ ++ + + T L +G+ P E++ ++ TT+ VD E LI L ELDDV
Sbjct: 175 TAWEDLSAVKTTLEASGLEPAESE--VTMIASTTVPVDASGAETVMGLIDALEELDDVQN 232
Query: 318 VYTD 321
VY++
Sbjct: 233 VYSN 236
>gi|74312520|ref|YP_310939.1| hypothetical protein SSON_2046 [Shigella sonnei Ss046]
gi|383178942|ref|YP_005456947.1| hypothetical protein SSON53_12075 [Shigella sonnei 53G]
gi|414576544|ref|ZP_11433728.1| hypothetical protein SS323385_2381 [Shigella sonnei 3233-85]
gi|415844781|ref|ZP_11524523.1| hypothetical protein SS53G_1223 [Shigella sonnei 53G]
gi|418266299|ref|ZP_12885847.1| hypothetical protein SSMOSELEY_2672 [Shigella sonnei str. Moseley]
gi|420359041|ref|ZP_14860017.1| hypothetical protein SS322685_2833 [Shigella sonnei 3226-85]
gi|119392022|sp|Q3Z0K8.1|YEEN_SHISS RecName: Full=Probable transcriptional regulatory protein YeeN
gi|73855997|gb|AAZ88704.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|323168893|gb|EFZ54573.1| hypothetical protein SS53G_1223 [Shigella sonnei 53G]
gi|391282642|gb|EIQ41272.1| hypothetical protein SS322685_2833 [Shigella sonnei 3226-85]
gi|391284962|gb|EIQ43549.1| hypothetical protein SS323385_2381 [Shigella sonnei 3233-85]
gi|397899921|gb|EJL16290.1| hypothetical protein SSMOSELEY_2672 [Shigella sonnei str. Moseley]
Length = 238
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 131/244 (53%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ +A K+G P+P NT L V+E+AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGATSKIYAKFGVEIYAAAKQGEPDPELNTSLKFVIERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A G E F++ YE +G G I+ E LT + R++A VR + GG
Sbjct: 61 KHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMIIAETLTSNVNRTIANVRTIFNKKGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV + F A V I F +D D + +I L+A DV D T+E+ Y
Sbjct: 121 IGAAGSVSYMFDNAGV--IVFKGSDPDHIFEILLEAEV-DV------RDVTEEEGNIVIY 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+D + I L+ AGI + E++ + +E+ E +E+ + L+ L + DDV
Sbjct: 172 --TEPTDLHKGIAA-LKAAGITEFSTTELEMIAQSEVELSPEDLEIFEGLVDALEDDDDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QKVY 232
>gi|161551793|ref|YP_148447.2| hypothetical protein GK2594 [Geobacillus kaustophilus HTA426]
gi|67462017|sp|Q5KWQ7.2|Y2594_GEOKA RecName: Full=Probable transcriptional regulatory protein GK2594
Length = 246
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 136/242 (56%), Gaps = 20/242 (8%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RK AQDAK+ KL+ ++ KE+ A K GG +P SN L V+EKAK ++P + +ER
Sbjct: 10 IQRRKNAQDAKRGKLFMKLAKEIYVAAKSGGGDPASNPSLRLVIEKAKAANMPSENIERA 69
Query: 143 IKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+A+ + E++ YE YG GGV+++V LTD R+ A VR GG + + G
Sbjct: 70 IKKATGTQEHTNYEEIRYEGYGPGGVAVMVVCLTDNKNRTAANVRAAFAKNGGNLGETGC 129
Query: 202 VMFKFRRA--RVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
V + F R V++ + + D+D+LL +A++AGAE++ + TDE +++ +
Sbjct: 130 VSYLFERKGLLVIDREQHNVDEDELLLLAIEAGAEEM-------ETTDES-----FEIYT 177
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLP--ITTIEVDDEAMELNKELIAKLLELDDVDA 317
+++ + +L + G F + + ++P TT+E DD L +LI L + DDV
Sbjct: 178 APESFETVKDELEQQGFTFASAEIT-MIPQTYTTLEGDDLKKML--KLIDTLEDDDDVQE 234
Query: 318 VY 319
VY
Sbjct: 235 VY 236
>gi|307701103|ref|ZP_07638128.1| DNA-binding regulatory protein, YebC/PmpR family [Mobiluncus
mulieris FB024-16]
gi|307614098|gb|EFN93342.1| DNA-binding regulatory protein, YebC/PmpR family [Mobiluncus
mulieris FB024-16]
Length = 253
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 118/216 (54%), Gaps = 16/216 (7%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++R+ K + A + GG +P N L ++KAK+ VP D +ER +KR
Sbjct: 13 KKAAIDAKRGKLFARLIKNIEVATRTGGGDPAGNPTLFDAIQKAKKSSVPADNIERAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S E G + YE YG GV +VE LTD R+V+ VR + GG MAD GSV
Sbjct: 73 GSGAESGGADWQSITYEGYGPNGVGFIVECLTDNKNRAVSEVRTIFSRNGGNMADTGSVS 132
Query: 204 FKFRRARVVNI-KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
++F R V+ + K D D+D++ + ++AGA+DV ED E + SD
Sbjct: 133 YQFARRGVIEVTKAADLDEDKIFEAVMEAGADDV-----------EDAGEIFVIETDPSD 181
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEA 298
+ T L+EAGI +++ S+ +P +++D E
Sbjct: 182 -LVGVRTALQEAGIDYDSAE-SQFVPSVKVDLDLEG 215
>gi|117923793|ref|YP_864410.1| hypothetical protein Mmc1_0479 [Magnetococcus marinus MC-1]
gi|166227286|sp|A0L4W1.1|Y479_MAGSM RecName: Full=Probable transcriptional regulatory protein Mmc1_0479
gi|117607549|gb|ABK43004.1| protein of unknown function DUF28 [Magnetococcus marinus MC-1]
Length = 250
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 134/242 (55%), Gaps = 13/242 (5%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKGAQDAK+ K+++R+ KE+ + + GG + +N L + + A+ ++PKD ++
Sbjct: 8 ANIKHRKGAQDAKRGKIFTRLIKEITVSARMGGGDAATNPRLRSAITAARAQNLPKDTMD 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
+ IKR + + + E+V +E YG GGV+I+V+ LTD R+VA VR + GG M
Sbjct: 68 KAIKRGTGELEGVNYEEVRFEGYGPGGVAIIVDCLTDNNNRTVADVRHIFNKYGGNMGTH 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
G V F F + + ++D +++ AL+AGAEDV V+E D+ ++V++
Sbjct: 128 GCVAFMFDKKGQIMFDAEGINEDAIIEAALEAGAEDV----VHEGDS--------FEVLT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
++++D+ L AG ++ + P ++D++ +L KL E +DV +Y
Sbjct: 176 DPNDFSDVLEALATAGFATPSEAEVVMRPQNLQQLDEQQASTMLKLYEKLEENEDVQNIY 235
Query: 320 TD 321
+
Sbjct: 236 AN 237
>gi|333983198|ref|YP_004512408.1| hypothetical protein [Methylomonas methanica MC09]
gi|333807239|gb|AEF99908.1| UPF0082 protein yeeN [Methylomonas methanica MC09]
Length = 251
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 136/244 (55%), Gaps = 17/244 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVK-KGGPNPTSNTVLAAVLEKAKELDVPKDIV 139
+ I RKGAQDAK+ K++++M +E+ A K GG +P++N L ++KA ++ +D +
Sbjct: 8 ANIKHRKGAQDAKRGKIFTKMIREITVAAKGAGGGDPSNNPSLRTAIDKALGANMKRDTI 67
Query: 140 ERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMAD 198
+ IK+A E+V YE YG GG +++V LTD R+VA VR GG +
Sbjct: 68 DNTIKKAIGALDGVNYEEVRYEGYGPGGTAVMVNCLTDNRNRTVADVRHAFSKHGGNLGT 127
Query: 199 PGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
GSV + FR+ +++ + D+D +++ AL+AGAED++ N+D + V
Sbjct: 128 DGSVAYLFRKVGILSFN-NEVDEDAVMETALEAGAEDIV---TNDDGS--------VDVF 175
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELLPI-TTIEVDDEAMELNKELIAKLLELDDVDA 317
+T + Y ++ L AG FE +N + T E+D EA E +LI +L +LDDV
Sbjct: 176 TTPEEYMNVKEALVAAG--FEPENAEVTMHADTKTELDAEAAEKMMKLIDRLEDLDDVQD 233
Query: 318 VYTD 321
VY++
Sbjct: 234 VYSN 237
>gi|283833289|ref|ZP_06353030.1| glucose-1-phosphate adenylyl transferase [Citrobacter youngae ATCC
29220]
gi|291070926|gb|EFE09035.1| glucose-1-phosphate adenylyl transferase [Citrobacter youngae ATCC
29220]
Length = 238
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 128/244 (52%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D + +Y++ G E+ +A K+G P+P +N+ L V+E+AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGATSNIYAKFGVEIYAAAKQGDPDPETNSSLKFVIERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A E F++ YE +G G +VVE LT + R++A VR + GG
Sbjct: 61 KHVIDKAIDKAKGGSDETFVQGRYEGFGPNGSMLVVETLTSNVNRTIANVRMIFNKKGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV + F V I FT D D++ +I LDA E V + DE Y
Sbjct: 121 IGAAGSVSYMFDNTGV--IVFTGTDPDRIFEILLDA------EVDVRDVTEDEGNIVIY- 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+D + I L+ AGI + E++ + IE+ E +E+ L+ L + DDV
Sbjct: 172 --TEATDLHKGIAA-LKAAGITEFSTTELEMIAQSEIELSPEDLEIFTGLVDALEDDDDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QKVY 232
>gi|148381024|ref|YP_001255565.1| hypothetical protein CBO3073 [Clostridium botulinum A str. ATCC
3502]
gi|153933797|ref|YP_001385395.1| hypothetical protein CLB_3102 [Clostridium botulinum A str. ATCC
19397]
gi|153935126|ref|YP_001388802.1| hypothetical protein CLC_2975 [Clostridium botulinum A str. Hall]
gi|166229368|sp|A5I6F4.1|Y3073_CLOBH RecName: Full=Probable transcriptional regulatory protein
CBO3073/CLC_2975
gi|166229379|sp|A7FY22.1|Y3102_CLOB1 RecName: Full=Probable transcriptional regulatory protein CLB_3102
gi|148290508|emb|CAL84636.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
3502]
gi|152929841|gb|ABS35341.1| conserved hypothetical protein TIGR01033 [Clostridium botulinum A
str. ATCC 19397]
gi|152931040|gb|ABS36539.1| conserved hypothetical protein TIGR01033 [Clostridium botulinum A
str. Hall]
Length = 246
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 122/217 (56%), Gaps = 15/217 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I +KG DAK+ K+++++GKE++ AVK+GGP+ SN L V+ KAK ++P D +ER+
Sbjct: 10 IQAKKGKVDAKRGKIFTKIGKEIVVAVKQGGPSADSNPRLRDVIAKAKANNMPNDTIERS 69
Query: 143 IKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+AS + E + YE YG G++++V+VLTD RS VR GG M G
Sbjct: 70 IKKASGELNAVDYETITYEGYGPAGIAVLVDVLTDNKNRSAGNVRYAFTKQGGNMGSTGC 129
Query: 202 VMFKFR-RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
V F F+ + ++V K D+D+L+ +ALDAGAED + + Y V ++
Sbjct: 130 VSFMFQSKGQIVIEKKDGLDEDELMMMALDAGAEDF------------ESEDEVYAVTTS 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDE 297
+++ + L G+ F + +++P T +D+E
Sbjct: 178 QEDFGTVREALEAEGLEF-LEAEIKMVPNTYTAIDEE 213
>gi|407778415|ref|ZP_11125679.1| hypothetical protein NA2_10578 [Nitratireductor pacificus pht-3B]
gi|407299786|gb|EKF18914.1| hypothetical protein NA2_10578 [Nitratireductor pacificus pht-3B]
Length = 249
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 128/239 (53%), Gaps = 13/239 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++S++ +E+ A K G P+P N L ++ AK +PKD +ER
Sbjct: 10 IMHRKGRQDAVRSKMFSKLAREITVAAKSGLPDPAMNPRLRLAVQNAKAQSMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+AS E + E YE YG GGV+++VE LTD RS + VR GG + + GSV
Sbjct: 70 IKKASGGDAENYEEVRYEGYGPGGVAVIVEALTDNRNRSASNVRAAFTKAGGALGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R + + D D++++ A++AGAEDV +DED + + +
Sbjct: 130 SFMFDRVGEIVYPASVGDADKVMEAAIEAGAEDV--------QSDEDG----HVITCGFE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ ++T+ L A E+ + P T VD++ + +LIA L + DDV VY +
Sbjct: 178 DIGEVTSALETALGEAESVK-AIWRPQTGTPVDEDRAQSILKLIATLEDDDDVQNVYAN 235
>gi|296170852|ref|ZP_06852413.1| YebC like protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295894508|gb|EFG74249.1| YebC like protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length = 251
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 126/238 (52%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K +DA++ K ++R+ K + A + GG +P N L ++KAK+ VP D +ER KR
Sbjct: 13 QKAVKDARRGKEFARLIKNIEVAARTGGGDPAGNPTLYDAIQKAKKTSVPNDNIERARKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
+ E G + +YE YG GV++++E LTD R+ VR V GG MADPGSV
Sbjct: 73 GAGEEAGGADYQTIMYEGYGPNGVAVLIECLTDNRNRAAGEVRVAVTRNGGNMADPGSVS 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R VV ++ +D +L LDAGAEDV D E ++++S +
Sbjct: 133 YLFTRKGVVTLEKNGLTEDDVLMAVLDAGAEDV-----------NDLGES-FEIISEPTD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ T L++AGI +E+ S P ++ VD + +L+ L + DDV V+T+
Sbjct: 181 LVAVRTALQDAGIDYESAEAS-FQPSVSVPVDVDGARKVFKLVEALEDSDDVQNVWTN 237
>gi|227875450|ref|ZP_03993591.1| protein of hypothetical function DUF28 [Mobiluncus mulieris ATCC
35243]
gi|269977298|ref|ZP_06184271.1| DNA-binding regulatory protein, YebC/PmpR family [Mobiluncus
mulieris 28-1]
gi|306818762|ref|ZP_07452484.1| YebC like protein [Mobiluncus mulieris ATCC 35239]
gi|227844004|gb|EEJ54172.1| protein of hypothetical function DUF28 [Mobiluncus mulieris ATCC
35243]
gi|269934601|gb|EEZ91162.1| DNA-binding regulatory protein, YebC/PmpR family [Mobiluncus
mulieris 28-1]
gi|304648448|gb|EFM45751.1| YebC like protein [Mobiluncus mulieris ATCC 35239]
Length = 253
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 118/216 (54%), Gaps = 16/216 (7%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++R+ K + A + GG +P N L ++KAK+ VP D +ER +KR
Sbjct: 13 KKAAIDAKRGKLFARLIKNIEVAARTGGGDPAGNPTLFDAIQKAKKSSVPADNIERAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S E G + YE YG GV +VE LTD R+V+ VR + GG MAD GSV
Sbjct: 73 GSGAESGGADWQSITYEGYGPNGVGFIVECLTDNKNRAVSEVRTIFSRNGGNMADTGSVS 132
Query: 204 FKFRRARVVNI-KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
++F R V+ + K D D+D++ + ++AGA+DV ED E + SD
Sbjct: 133 YQFARRGVIEVTKAADLDEDKIFEAVMEAGADDV-----------EDAGEIFVIETDPSD 181
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEA 298
+ T L+EAGI +++ S+ +P +++D E
Sbjct: 182 -LVGVRTALQEAGIDYDSAE-SQFVPSVKVDLDLEG 215
>gi|443290312|ref|ZP_21029406.1| conserved hypothetical protein [Micromonospora lupini str. Lupac
08]
gi|385886639|emb|CCH17480.1| conserved hypothetical protein [Micromonospora lupini str. Lupac
08]
Length = 250
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 128/238 (53%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K DAK+ K+++++ K V A + GG +P+ N L ++KAK+ VP D ++R +KR
Sbjct: 13 KKAVIDAKRGKMFAKLIKNVEVAARTGGGDPSGNPTLFDAIQKAKKSSVPNDNIDRAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S E G + +YE YG GV++++E LTD R+ VR + GG +AD GSV
Sbjct: 73 GSGLEAGGADWQTIMYEGYGPNGVAMLIECLTDNRNRAATEVRTALTRNGGSLADAGSVS 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R VV + +D ++ LDAGAE+V +D E Y+VVS +
Sbjct: 133 YMFSRKGVVIVPKEGTSEDDVMMAVLDAGAEEV-------NDLGE-----AYEVVSEPTD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ T L++AGI +E+ S L+P + +D+E +LI L + DDV VY +
Sbjct: 181 LIPVRTALQDAGIEYESAE-SSLVPSMNVPLDEEGARKIFKLIDVLEDCDDVQNVYAN 237
>gi|352080100|ref|ZP_08951169.1| protein of unknown function DUF28 [Rhodanobacter sp. 2APBS1]
gi|351684809|gb|EHA67878.1| protein of unknown function DUF28 [Rhodanobacter sp. 2APBS1]
Length = 242
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 137/246 (55%), Gaps = 17/246 (6%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR S I GRK A+DA++AK+++++ +E+ A + G +P N L A ++KA ++
Sbjct: 1 MGRGPS-IEGRKNAEDARRAKVFTKLIREITVATRSGVADPGGNPRLRAAIDKALSANMT 59
Query: 136 KDIVERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGG 194
KD +ER IKR S A ++++ YE YG G+++++E TD TR+VA VR + GG
Sbjct: 60 KDTIERAIKRGSGADGGADMQELRYEGYGPAGIALIIECFTDNPTRTVADVRYALTKHGG 119
Query: 195 KMADPGSVMFKFRRARVVNIKFTD--ADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAE 252
+ GSV F+F R + D A ++++L+ AL+AGA+DVI NE
Sbjct: 120 NLGTSGSVAFQFTRCGELVFATGDDAAAEEKVLEAALEAGADDVI----NEHGES----- 170
Query: 253 RYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLEL 312
V+ T +++ + L AG+ + G + P +EV +EA+E +L+ KL L
Sbjct: 171 ---TVLCTPESFEAVQQGLIAAGLNAQ-HAGVVMRPNNRVEVPEEALEQLLDLLEKLDAL 226
Query: 313 DDVDAV 318
DDV V
Sbjct: 227 DDVSEV 232
>gi|260887323|ref|ZP_05898586.1| glucose-1-phosphate adenylyltransferase [Selenomonas sputigena ATCC
35185]
gi|330838924|ref|YP_004413504.1| hypothetical protein Selsp_1085 [Selenomonas sputigena ATCC 35185]
gi|402833827|ref|ZP_10882437.1| DNA-binding regulatory protein, YebC/PmpR family [Selenomonas sp.
CM52]
gi|260862959|gb|EEX77459.1| glucose-1-phosphate adenylyltransferase [Selenomonas sputigena ATCC
35185]
gi|329746688|gb|AEC00045.1| protein of unknown function DUF28 [Selenomonas sputigena ATCC
35185]
gi|402279673|gb|EJU28455.1| DNA-binding regulatory protein, YebC/PmpR family [Selenomonas sp.
CM52]
Length = 243
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 89/250 (35%), Positives = 137/250 (54%), Gaps = 25/250 (10%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +KGA DA + K+ +++G+E+ AV+ GG +PT N L L KAK ++PKD
Sbjct: 6 KWANIKRKKGANDAIRGKITTKIGREITIAVRMGGGDPTGNMRLKLALSKAKANNIPKD- 64
Query: 139 VERNIKRASEKGQEA-----FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCG 193
NI+RA +KG A + E YE YG G +I++++LTD RS A VR + G
Sbjct: 65 ---NIQRAIQKGLGAAEGSNYEELTYEGYGPAGSAIMLDILTDNRNRSAADVRHIFSKYG 121
Query: 194 GKMADPGSVMFKFRRARVVNI-KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAE 252
G + + G V + F++ V + K T D+D+L+ I LDAGAED EDD
Sbjct: 122 GNLGETGCVGWMFKQKAVFIVEKETFEDEDELMGIVLDAGAEDF----KAEDDV------ 171
Query: 253 RYYKVVSTSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLE 311
+++ + +Y I L E GI ET + ++P TT++++ + E + LI L E
Sbjct: 172 --FEITADPADYDAIEAALGEKGI--ETASAEITMVPDTTVKLEGKDAEKMQNLIDALEE 227
Query: 312 LDDVDAVYTD 321
DDV VY++
Sbjct: 228 NDDVQNVYSN 237
>gi|219871143|ref|YP_002475518.1| hypothetical protein HAPS_0943 [Haemophilus parasuis SH0165]
gi|254807278|sp|B8F5G8.1|Y943_HAEPS RecName: Full=Probable transcriptional regulatory protein HAPS_0943
gi|219691347|gb|ACL32570.1| aspartyl-tRNA synthetase [Haemophilus parasuis SH0165]
Length = 246
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 137/241 (56%), Gaps = 17/241 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDA++ K+++++ +E+++A K GG + +SN L A ++KA ++ +D +
Sbjct: 8 ANIKHRKAAQDAQRGKIFTKLIRELVTAAKLGGGDTSSNPRLRAAVDKALSNNMTRDTIN 67
Query: 141 RNIKRASEKGQEAFIE-KVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I R G + +E KVYE YG GG +++VE L+D R+++ VR CGG +
Sbjct: 68 RAIDRGVGGGDDTNMETKVYEGYGPGGTAVMVECLSDNANRTISQVRPSFTKCGGNLGTE 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F + ++ I AD+D L + A++AGA+D I+P ED + +++ +
Sbjct: 128 GSVGYLFSKKGLILI--ASADEDALTEAAIEAGADD-IQP--QEDGS--------FEIYT 174
Query: 260 TSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
++ + + AG F+ +N ++P TT+++D E +LI +L + DDV V
Sbjct: 175 AWEDLGSVRDGIEAAG--FKVENAEVTMIPSTTVQLDAETAPKLLDLINRLEDCDDVQNV 232
Query: 319 Y 319
Y
Sbjct: 233 Y 233
>gi|166031787|ref|ZP_02234616.1| hypothetical protein DORFOR_01488 [Dorea formicigenerans ATCC
27755]
gi|346306352|ref|ZP_08848510.1| hypothetical protein HMPREF9457_00219 [Dorea formicigenerans
4_6_53AFAA]
gi|166028240|gb|EDR46997.1| DNA-binding regulatory protein, YebC/PmpR family [Dorea
formicigenerans ATCC 27755]
gi|345900157|gb|EGX69985.1| hypothetical protein HMPREF9457_00219 [Dorea formicigenerans
4_6_53AFAA]
Length = 243
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 126/225 (56%), Gaps = 21/225 (9%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGG-PNPTSNTVLAAVLEKAKELDVPKD 137
+ + I +K DA K K+++++GKE+ AVK+GG +P +N+ L V+ KAK ++P D
Sbjct: 6 KFANIKHKKEKNDAAKGKIFTKIGKELAVAVKEGGSADPANNSRLRDVIAKAKANNMPND 65
Query: 138 IVERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKM 196
++RNIK+A A E + YE YG G +I+VE LTD R+ V+ G +
Sbjct: 66 TIDRNIKKAEGDANAANYEHITYEGYGPNGTAIIVEALTDNRNRTATNVKNAFTKGKGNV 125
Query: 197 ADPGSVMFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERY 254
PG V F F + +V+ + D D D+L+ ALDAGAED E E+D+
Sbjct: 126 GTPGCVSFMFDKKGQIIVDKEEFDGDSDELMMTALDAGAEDFSE----EEDS-------- 173
Query: 255 YKVVSTSDNYTDITTKLREAGIPFETDNGSE--LLPITTIEVDDE 297
+++ +T ++++ + L EAGIP G+E ++P T +E+ DE
Sbjct: 174 FEIFTTPEDFSAVRQALEEAGIPMA---GAEVTMIPQTYVELTDE 215
>gi|389808758|ref|ZP_10204921.1| hypothetical protein UUA_11091 [Rhodanobacter thiooxydans LCS2]
gi|388442482|gb|EIL98674.1| hypothetical protein UUA_11091 [Rhodanobacter thiooxydans LCS2]
Length = 244
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 139/247 (56%), Gaps = 19/247 (7%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR S I GRK A+DA++AK+++++ +E+ A + G +P N L A ++KA ++
Sbjct: 1 MGRGPS-IEGRKNAEDARRAKVFTKLIREITVATRSGVADPGGNPRLRAAIDKALSANMT 59
Query: 136 KDIVERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGG 194
KD +ER +KR S A ++++ YE YG G+++++E TD TR+VA VR + GG
Sbjct: 60 KDTIERAVKRGSGADGGADMQELRYEGYGPAGIALIIESFTDNPTRTVADVRYALTKHGG 119
Query: 195 KMADPGSVMFKFRRARVVNIKFTDAD---KDQLLDIALDAGAEDVIEPPVNEDDTDEDRA 251
+ GSV F+F R + + TD D ++++L+ AL+AGA+DVI NE
Sbjct: 120 NLGTSGSVAFQFTRCGEL-VFATDGDAAAEEKVLEAALEAGADDVI----NEHGES---- 170
Query: 252 ERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLE 311
V+ T +N+ + L AG+ + G + P +EV +EA+E +L+ KL
Sbjct: 171 ----IVLCTPENFEAVQQGLIAAGLNAQ-HAGVVMRPNNRVEVPEEALEQLLDLLEKLDA 225
Query: 312 LDDVDAV 318
LDDV V
Sbjct: 226 LDDVSEV 232
>gi|384489854|gb|EIE81076.1| hypothetical protein RO3G_05781 [Rhizopus delemar RA 99-880]
Length = 274
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 137/246 (55%), Gaps = 21/246 (8%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
SK+ KGA+DAKK+ LYS++ E++S+ + GG +P+ N LAAVL +AK +PKD +E
Sbjct: 39 SKVKHTKGAKDAKKSILYSKISLEIVSSARSGGTDPSVNNKLAAVLNRAKAASMPKDSIE 98
Query: 141 RNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
+K+A++K + +YE G GG++++VE LTDK +R+V V+EV+ GG ++ G
Sbjct: 99 NALKKATDKNKADLENVLYECVGPGGMALIVEALTDKKSRTVKEVKEVLNRVGGSVSSVG 158
Query: 201 SVMFKFRRARVVNIKFTDADKD----QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
+ K R + FT + + Q++D+A+D+G ED+ +ED+ +
Sbjct: 159 YLFDKKGR-----VAFTPGESNHSFEQIMDVAIDSGVEDI----------EEDQDNNLIE 203
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEV-DDEAMELNKELIAKLLELDDV 315
V I+ KL + + +P + IE+ D + +EL + + + +L+DV
Sbjct: 204 VTCEFSELNTISKKLMNQKYEVQQIEAT-YIPTSIIELKDKDTIELVTKCLEDMEDLEDV 262
Query: 316 DAVYTD 321
V+++
Sbjct: 263 VKVHSN 268
>gi|336434909|ref|ZP_08614628.1| hypothetical protein HMPREF0988_00213 [Lachnospiraceae bacterium
1_4_56FAA]
gi|336002317|gb|EGN32428.1| hypothetical protein HMPREF0988_00213 [Lachnospiraceae bacterium
1_4_56FAA]
Length = 244
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 131/244 (53%), Gaps = 18/244 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGG-PNPTSNTVLAAVLEKAKELDVPKDIV 139
+ I +K DA K K+++++G+E+ AVK+GG P+P +N+ L V+ KAK ++P D +
Sbjct: 8 ANIKHKKEKNDAAKGKIFTKIGRELAVAVKEGGGPDPANNSRLRDVIAKAKSNNMPNDTI 67
Query: 140 ERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMAD 198
ERNIK+A+ +G E + YE YG G +I+V+ LTD R+ + VR G +
Sbjct: 68 ERNIKKAAGEGAGDNYEHITYEGYGPNGTAIIVKTLTDNKNRTASNVRSAFTKGSGNIGT 127
Query: 199 PGSVMFKFRRARVVNIKFTDA--DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
PG V F F + + D D D+L+ +ALDAGAED E E ++
Sbjct: 128 PGCVSFMFDEKGQILVAKEDCEMDADELMMLALDAGAEDFAEE------------EESFE 175
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLEL-DDV 315
+++ +++++ KL EAGI + ++P T +E+ E N + LLE DDV
Sbjct: 176 ILTDPADFSEVRLKLEEAGIQMANAEVT-MIPQTYVELTKEEDIKNIQKTLDLLEEDDDV 234
Query: 316 DAVY 319
VY
Sbjct: 235 QDVY 238
>gi|239832805|ref|ZP_04681134.1| conserved hypothetical protein [Ochrobactrum intermedium LMG 3301]
gi|444312936|ref|ZP_21148502.1| hypothetical protein D584_24185 [Ochrobactrum intermedium M86]
gi|239825072|gb|EEQ96640.1| conserved hypothetical protein [Ochrobactrum intermedium LMG 3301]
gi|443483702|gb|ELT46538.1| hypothetical protein D584_24185 [Ochrobactrum intermedium M86]
Length = 248
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 127/239 (53%), Gaps = 13/239 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++S++G+E+ A K+G P+P N L ++ AK +PKD +ER
Sbjct: 10 IMHRKGRQDAVRSKMFSKLGREITVAAKQGLPDPAMNPRLRLAIQNAKAQSMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A+ E + E YE G GGVS++VE LTD R+ + VR GG + + GSV
Sbjct: 70 IKKAAGNDGENYDEVRYEGRGPGGVSVIVEALTDNRNRTASNVRAAFTKSGGALGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R + K + D D++++ A++AGA+DV E + ++ +
Sbjct: 130 SFMFDRVGEIIYKSSVGDADKVMEAAIEAGADDV------------QSGEEEHVIICAFE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ +++ L EA + + P T E+D+E +L+ L + DDV VYT+
Sbjct: 178 DIGEVSKAL-EAALGEAESIKTIWKPQTNTELDEEKARSVLKLLNVLEDDDDVQNVYTN 235
>gi|152974298|ref|YP_001373815.1| hypothetical protein Bcer98_0465 [Bacillus cytotoxicus NVH 391-98]
gi|189040206|sp|A7GL12.1|Y465_BACCN RecName: Full=Probable transcriptional regulatory protein
Bcer98_0465
gi|152023050|gb|ABS20820.1| protein of unknown function DUF28 [Bacillus cytotoxicus NVH 391-98]
Length = 239
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 132/246 (53%), Gaps = 16/246 (6%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K ++DA +++Y++ G+E+ A K+G P+P SN L VLE+AK VP
Sbjct: 1 MGRKWNNIKDKKASKDANTSRIYAKFGREIYVAAKQGEPDPESNQALKVVLERAKTYSVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K I++R I++A +E + E YE +G G I+V+ LT+ + R+ A VR GG
Sbjct: 61 KSIIDRAIEKAKGGSEENYDELRYEGFGPNGSMIIVDTLTNNVNRTAADVRAAFNKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDA--GAEDVIEPPVNEDDTDEDRAER 253
M GSV + F V+ ++ A D++L+I ++A A D++E E+D+
Sbjct: 121 MGVNGSVAYMFDATAVIGLEGKTA--DEVLEILMEADVDARDILE----EEDS------- 167
Query: 254 YYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELD 313
+ + D + + L+ AG T +L +E+ +EA ++LI L +LD
Sbjct: 168 -VIIYAEPDQFHAVQEALKAAGTTEFTVAELTMLAQNDVELSEEAQAQFEKLIDALEDLD 226
Query: 314 DVDAVY 319
DV VY
Sbjct: 227 DVQQVY 232
>gi|430854023|ref|ZP_19471745.1| hypothetical protein OGW_05363 [Enterococcus faecium E1258]
gi|430539700|gb|ELA79940.1| hypothetical protein OGW_05363 [Enterococcus faecium E1258]
Length = 240
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 130/241 (53%), Gaps = 17/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K GGP+P+ N L V++KAK ++P D VER
Sbjct: 10 IQGRKNAQDAKRGKVFQKLSREIYMAAKAGGPDPSMNPALRLVVDKAKAANMPNDNVERA 69
Query: 143 IKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+A+ E + E YE YG GGV I+V LT+ R+ VR GG + + GS
Sbjct: 70 IKKATSAVDETNYDEITYEGYGPGGVGILVHALTENRNRTATNVRVAFTRNGGSLGETGS 129
Query: 202 VMFKFRRARVVNIK--FTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
V + F R + I+ D++ + + L+AGAED+ P +++ +
Sbjct: 130 VSYLFDRKGYIAIERDGLTVDEETMFEDVLEAGAEDLQTSP------------EVFEIYT 177
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+++ + +L + + + ++P TTI++++E E + L+ KL + DDV V+
Sbjct: 178 APEDFAAVRDELEKEFTLAQAE--LTMIPQTTIDLNEEQKEQLERLVDKLEDDDDVSEVF 235
Query: 320 T 320
T
Sbjct: 236 T 236
>gi|365840288|ref|ZP_09381486.1| DNA-binding regulatory protein, YebC/PmpR family [Anaeroglobus
geminatus F0357]
gi|364561864|gb|EHM39740.1| DNA-binding regulatory protein, YebC/PmpR family [Anaeroglobus
geminatus F0357]
Length = 246
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 135/245 (55%), Gaps = 24/245 (9%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +KG DA + K+ +++ +E+ AV+ GG +PT N L L+KAKE ++PK+
Sbjct: 8 ANIKRKKGKNDAVRGKITTKISREITIAVRMGGADPTGNMRLKLALQKAKENNIPKE--- 64
Query: 141 RNIKRASEKGQ-----EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
NI RA +KG +++ E VYE YG GV++ + VLTD R+ A VR + GG
Sbjct: 65 -NINRAVQKGAGTLEGQSYEEIVYEGYGPAGVALTLSVLTDNRNRTAAEVRHIFSKYGGN 123
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
M + G V + F+ V + AD+D+L++IAL+AGA+D+ D DE Y
Sbjct: 124 MGETGCVAWMFKNRGVFIVAGEAADEDRLMEIALEAGADDI------RADGDE------Y 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVD-DEAMELNKELIAKLLELDD 314
++++ + Y D+ L + IP E + ++P + + D+A +L + +I +LDD
Sbjct: 172 EIITVPEAYDDVEKALADNRIPVEHAQIT-MVPDNFVALGKDDAQKL-ENMIDAFDDLDD 229
Query: 315 VDAVY 319
V VY
Sbjct: 230 VQDVY 234
>gi|392396647|ref|YP_006433248.1| YebC/PmpR family DNA-binding regulatory protein [Flexibacter
litoralis DSM 6794]
gi|390527725|gb|AFM03455.1| DNA-binding regulatory protein, YebC/PmpR family [Flexibacter
litoralis DSM 6794]
Length = 244
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/243 (35%), Positives = 130/243 (53%), Gaps = 11/243 (4%)
Query: 78 RRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKD 137
R+ +K A R GA A+ ++++G+E+ AVK GG +P +N L ++ AK ++PKD
Sbjct: 8 RKKAKFA-RWGAM----ARNFTKVGREIAIAVKDGGADPDTNPRLRTAMQNAKGFNMPKD 62
Query: 138 IVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
VE IKRAS K + F E VYE Y G+ +VVE T+ R+VA VR CGG +
Sbjct: 63 RVEAAIKRASSKEEGDFEEIVYEGYAMHGIPVVVECATNNSNRTVAMVRMHFNRCGGALG 122
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GS+ F F R V ++ D D+L +DAGAED+ + E+ E+ V
Sbjct: 123 KTGSLEFMFDRTGVFELEADKVDMDELELDFIDAGAEDITTATIEV----EEGVEQEIIV 178
Query: 258 VSTS-DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
+ T +++ + L E GI + N + +P T ++DDE E +LI +L E DD+
Sbjct: 179 IHTKFEDFGQMQKFLEEKGIEPKKSN-IQRIPKNTQKLDDEQEEEVMKLIDRLEEEDDIQ 237
Query: 317 AVY 319
VY
Sbjct: 238 EVY 240
>gi|384158241|ref|YP_005540314.1| hypothetical protein BAMTA208_03190 [Bacillus amyloliquefaciens
TA208]
gi|384163122|ref|YP_005544501.1| hypothetical protein LL3_00726 [Bacillus amyloliquefaciens LL3]
gi|384167285|ref|YP_005548663.1| hypothetical protein BAXH7_00670 [Bacillus amyloliquefaciens XH7]
gi|328552329|gb|AEB22821.1| hypothetical protein BAMTA208_03190 [Bacillus amyloliquefaciens
TA208]
gi|328910677|gb|AEB62273.1| hypothetical protein LL3_00726 [Bacillus amyloliquefaciens LL3]
gi|341826564|gb|AEK87815.1| hypothetical protein BAXH7_00670 [Bacillus amyloliquefaciens XH7]
Length = 239
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 127/244 (52%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K ++DA +++Y++ G+E+ A K+G P+P SN L VLE+AK VP
Sbjct: 1 MGRKWNNIKEKKASKDANTSRIYAKFGREIYVAAKQGEPDPESNQALKVVLERAKTYSVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K+I+ER I++A +E F E YE +G G I+V+ LT+ + R+ VR GG
Sbjct: 61 KNIIERAIEKAKGGAEENFDELRYEGFGPNGSMIIVDALTNNVNRTAPEVRAAFGKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
M GSV + F V+ ++ AD+ L + D D++E EDD+
Sbjct: 121 MGVSGSVAYMFDATAVIGVEGKTADEALELLMEADVDVRDILE----EDDS--------V 168
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
V + D + + + AG+ T +L IE+ ++A ++LI L +L+DV
Sbjct: 169 IVYAEPDQFHAVQEAFKNAGVEEFTVAELTMLAQNEIELPEDAKAQFEKLIDVLEDLEDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QQVY 232
>gi|410666303|ref|YP_006918674.1| hypothetical protein M5M_19080 [Simiduia agarivorans SA1 = DSM
21679]
gi|409028660|gb|AFV00945.1| hypothetical protein M5M_19080 [Simiduia agarivorans SA1 = DSM
21679]
Length = 247
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 89/245 (36%), Positives = 136/245 (55%), Gaps = 21/245 (8%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK QDAK+ K+++++ +E+ A K GGPNP N L A ++KA ++ +D ++
Sbjct: 8 ANIKHRKARQDAKRGKIFTKIIRELTVAAK-GGPNPDDNPRLRAAVDKALGANMKRDTID 66
Query: 141 RNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
+ I + S + E + E YE YG GV++++E +TD R+VA VR GG +
Sbjct: 67 KAIAKGSGQTDGENYEECTYEGYGLAGVAVLIECMTDNRNRTVAEVRNAFSKKGGNLGTD 126
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F R V I F AD+D L++ A++AGA DVI VN+D + VV
Sbjct: 127 GSVAYLFTRTGV--ISFAGADEDALMEAAIEAGAADVI---VNDDGS---------VVVH 172
Query: 260 TS-DNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDD-EAMELNKELIAKLLELDDVD 316
T+ +++ + L AG F+ D+ +LP T E+DD + E LI L +LDDV
Sbjct: 173 TAFEDFLSVKDALVAAG--FKPDDAEVTMLPATHAEIDDKDTAEKVMALIDMLEDLDDVQ 230
Query: 317 AVYTD 321
VYT+
Sbjct: 231 NVYTN 235
>gi|227514555|ref|ZP_03944604.1| protein of hypothetical function DUF28 [Lactobacillus fermentum
ATCC 14931]
gi|227087112|gb|EEI22424.1| protein of hypothetical function DUF28 [Lactobacillus fermentum
ATCC 14931]
Length = 247
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 127/239 (53%), Gaps = 15/239 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +++ A K G P+P +N L V++KA+ ++PK ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKISRDLYQAAKAGDPDPDNNPQLRLVMDKARAANMPKQNIQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
I + + G F E YE YG GGV+++V LTD R+ AA+R GG + GSV
Sbjct: 70 IDKDTGAGGANFEEITYEGYGPGGVAVMVFCLTDNKNRTAAAIRSAFTHSGGSLGATGSV 129
Query: 203 MFKFRRARVVNI--KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R ++ I D D+D +L ALDAGA+D+ TD+ +++ +
Sbjct: 130 SYMFNRQGLIEILRDGLDKDEDDMLMDALDAGADDMQA-------TDD-----KFQIFTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
T + L+E G ET + ++P +V + + + LI +L + DDV VY
Sbjct: 178 PSAMTSVRDALQEQGYELETAEVT-MIPENKTKVPADKVGQYQHLIDELEDNDDVADVY 235
>gi|408417804|ref|YP_006759218.1| hypothetical protein TOL2_C03440 [Desulfobacula toluolica Tol2]
gi|405105017|emb|CCK78514.1| conserved uncharacterized protein [Desulfobacula toluolica Tol2]
Length = 247
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 130/242 (53%), Gaps = 14/242 (5%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
S I +KGA DAK+ KL++++ KE+ A + GG +P +N L L A+ ++PKD E
Sbjct: 8 STIKHKKGATDAKRGKLFTKLIKEITVAARMGGGDPEANPRLRHALSIARSQNMPKDTSE 67
Query: 141 RNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R +K+ + + + + E VYE YG GGV+++VE LTD R++A VR GG +
Sbjct: 68 RAVKKGTGELEGVNYEEIVYEGYGPGGVAVLVECLTDNRNRTIAEVRHAFGKAGGNVGTD 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
G V + F + V+ + D+D++ L+++AL+AGAED+ E + +++
Sbjct: 128 GCVAWMFDKKGVLTVSKEDSDEETLMEVALEAGAEDIREET------------NSFDIIT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
++ + + AGI +E + +LP +VD + E + + L + DDV Y
Sbjct: 176 EPADFDAVKEAVDAAGIKYEMAEIT-MLPQNMTKVDGKEAEQMIKFMDVLDDCDDVQKFY 234
Query: 320 TD 321
T+
Sbjct: 235 TN 236
>gi|335048670|ref|ZP_08541690.1| DNA-binding regulatory protein, YebC/PmpR family [Parvimonas sp.
oral taxon 110 str. F0139]
gi|333758470|gb|EGL36028.1| DNA-binding regulatory protein, YebC/PmpR family [Parvimonas sp.
oral taxon 110 str. F0139]
Length = 247
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 130/244 (53%), Gaps = 15/244 (6%)
Query: 78 RRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKD 137
+ S I +KG +DA++ K+++++ + +I AVK+GG +P N L +EKAK ++P D
Sbjct: 5 NKWSTIKHKKGKEDARRGKIFTKLARYIIVAVKEGGADPEYNPALKTAIEKAKAENMPND 64
Query: 138 IVERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKM 196
+ER +K+A+ G + E + YE YG G+++VVE LTD R+ A VR GG +
Sbjct: 65 NIERALKKAAGDGDASNYETIIYEGYGPEGIAVVVECLTDNRNRTAADVRHAFDKHGGNL 124
Query: 197 ADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
GSV+F F + VV I A++D L+D AL+ GA D + + Y
Sbjct: 125 GQNGSVLFMFEKKGVVVISKDQAEEDDLMDFALENGASDF------------ESDDEVYT 172
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDD-EAMELNKELIAKLLELDDV 315
+ S ++ + L+E G F + E +P ++ + + ++ ++I +L + DDV
Sbjct: 173 IYSEVSDFITLRDALQEKGYTFSACD-LEYVPSNNSQISNPDNIKKMVKMIDQLEDNDDV 231
Query: 316 DAVY 319
VY
Sbjct: 232 QNVY 235
>gi|449128583|ref|ZP_21764829.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola SP33]
gi|448940991|gb|EMB21895.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola SP33]
Length = 247
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 131/237 (55%), Gaps = 16/237 (6%)
Query: 87 KGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRA 146
KGA DAK+ +L+++ KE+ A K GG +P +N L + KA+ ++PKD +ER IK+
Sbjct: 14 KGAADAKRGQLFTKFIKEISIAAKMGGGDPATNPRLRTAVLKARAANMPKDNIERAIKKG 73
Query: 147 S-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 205
+ E G + E +YE YG GGV+++VEVLTD R+ A+VR + GG + GSV +
Sbjct: 74 TGELGAVNYEELLYEGYGPGGVAVLVEVLTDNKNRTAASVRNIFTKSGGNLGATGSVAYM 133
Query: 206 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 265
F R V+ ++ +++ AL+AGAED+ ED V + +++
Sbjct: 134 FNRKGVIEYDADAVSEEAIMEAALEAGAEDI----ATEDGV--------ITVTTDPNDFA 181
Query: 266 DITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ L+E G FE+ + S ++P T + +D + + ++I KL E DDV V ++
Sbjct: 182 SVLEALQEKG--FESVSASVSMVPDTYVALDADTTQKALKMIDKLEEDDDVQTVSSN 236
>gi|400754937|ref|YP_006563305.1| hypothetical protein PGA2_c20690 [Phaeobacter gallaeciensis 2.10]
gi|398654090|gb|AFO88060.1| hypothetical protein PGA2_c20690 [Phaeobacter gallaeciensis 2.10]
Length = 271
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 138/273 (50%), Gaps = 35/273 (12%)
Query: 69 RTFAPVC---MGRRS---------------SKIAGRKGAQDAKKAKLYSRMGKEVISAVK 110
R AP C MG RS + I RKG QDA ++KL+S++ KE+ A K
Sbjct: 3 RLKAPRCRGYMGARSKLKQQGCTMAGHSKWANIQHRKGRQDAARSKLFSKLSKEITVAAK 62
Query: 111 KGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIV 170
G P+P N L +++AK VPKD+++R IK+++ + + E YE YG GV+++
Sbjct: 63 MGDPDPEKNPRLRLAVKEAKSQSVPKDVIDRAIKKSTAGEGDDYEEIRYEGYGPNGVAVI 122
Query: 171 VEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALD 230
VE +TD R+ + VR GG + + GSV F F R V D D ++ A++
Sbjct: 123 VEAMTDNRNRTASTVRSTFSKNGGNLGETGSVGFMFDRKGEVTYPAAVGDADTVMMAAIE 182
Query: 231 AGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL--P 288
AGAEDV D +E + + + +++ L G E+D+ ++L+ P
Sbjct: 183 AGAEDV------------DSSEDGHIIYCADTDLNEVSNALE--GELGESDS-TKLVWKP 227
Query: 289 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
TT E+D E M+ +L+ L + DDV V T+
Sbjct: 228 TTTTELDLEGMQKLMKLVDALEDDDDVQRVTTN 260
>gi|347751448|ref|YP_004859013.1| hypothetical protein Bcoa_1015 [Bacillus coagulans 36D1]
gi|347583966|gb|AEP00233.1| UPF0082 protein yeeN [Bacillus coagulans 36D1]
Length = 239
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 125/244 (51%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+DA +++Y++ G+E+ A K+G P+P +N+ L VLE+AK VP
Sbjct: 1 MGRKWNNIKDKKAARDANTSRIYAKFGREIYVAAKQGVPDPVANSALKMVLERAKTYSVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K I++R I++A E + E YE +G GG I+V+ LT+ + R+ + VR GG
Sbjct: 61 KAIIDRAIEKAKGGADENYDELRYEGFGPGGSMIIVDTLTNNVNRTASEVRAAFGKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
M GSV + F + V I+ AD+ L + D DV E ED A Y
Sbjct: 121 MGVSGSVAYMFDKTAVFGIEGKTADEVLELLLEADIDVRDVFE---------EDGAVIVY 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+ D + + AGI T +LP + + DE E ++LI L +L+DV
Sbjct: 172 ---AEPDQFHAVQEAFENAGITEFTVAELTMLPQNEVTLPDEDREKFEKLIDVLEDLEDV 228
Query: 316 DAVY 319
+Y
Sbjct: 229 QQIY 232
>gi|389781128|ref|ZP_10194535.1| hypothetical protein UU7_11447 [Rhodanobacter spathiphylli B39]
gi|388435408|gb|EIL92315.1| hypothetical protein UU7_11447 [Rhodanobacter spathiphylli B39]
Length = 240
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/246 (35%), Positives = 135/246 (54%), Gaps = 17/246 (6%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR S I GRK A+DAK+AK+++++ +E+ A + G +P N L A ++KA ++
Sbjct: 1 MGRGPS-IEGRKNAEDAKRAKVFTKLIREITVATRAGVADPGGNPRLRAAIDKALSANMT 59
Query: 136 KDIVERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGG 194
KD +ER IKR S A ++++ YE YG G ++++E TD TR+VA VR + GG
Sbjct: 60 KDTIERAIKRGSGADGGADMQELRYEGYGPAGTALIIESFTDNPTRTVADVRYALTKHGG 119
Query: 195 KMADPGSVMFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAE 252
+ GSV F+F R V +A ++++L+ AL+AGA+DV VNE
Sbjct: 120 NLGTSGSVAFQFTRCGELVFATGGDEAAEEKVLEAALEAGADDV----VNEHGES----- 170
Query: 253 RYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLEL 312
V+ +N+ + L +AG+ G + P +EV +EA+E +L+ KL L
Sbjct: 171 ---TVLCAPENFEAVQQALVDAGLS-ALHAGVVMRPNNRVEVPEEALEQLMDLLEKLDSL 226
Query: 313 DDVDAV 318
DDV V
Sbjct: 227 DDVSEV 232
>gi|339629763|ref|YP_004721406.1| hypothetical protein TPY_3511 [Sulfobacillus acidophilus TPY]
gi|339287552|gb|AEJ41663.1| hypothetical protein TPY_3511 [Sulfobacillus acidophilus TPY]
Length = 231
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/236 (36%), Positives = 131/236 (55%), Gaps = 22/236 (9%)
Query: 91 DAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKG 150
DA+K L+SR+ KE+++A K+GG NP +N L +EKAK ++P +ER I+RA+ G
Sbjct: 2 DAQKGTLFSRLTKEIMAAAKRGGGNPDTNFKLRIAIEKAKANNLPAANIERAIRRAT--G 59
Query: 151 QEA---FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 207
QEA + E VYE YG GG +I +++LTD R+ +R + GG + + G V + F
Sbjct: 60 QEAGVHYEEAVYEGYGPGGTAIYMDILTDNRNRTAGEIRHIFSRHGGSLGETGCVAWMFE 119
Query: 208 RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDI 267
+ I TD +++LLDIA++AGA+D+ EDD Y V++ D +
Sbjct: 120 PKGRLVITQTDLTEEELLDIAIEAGADDL----AREDDE--------YVVLTAPDVLDLV 167
Query: 268 TTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ GIP + +EL LP TT+ V+ E EL+ L + DDV VY++
Sbjct: 168 RQAFEDRGIPVDE---AELVRLPKTTVAVEGREAEQLMELLELLEDHDDVQRVYSN 220
>gi|110597084|ref|ZP_01385373.1| Protein of unknown function DUF28 [Chlorobium ferrooxidans DSM
13031]
gi|110341275|gb|EAT59740.1| Protein of unknown function DUF28 [Chlorobium ferrooxidans DSM
13031]
Length = 250
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 132/240 (55%), Gaps = 13/240 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I +K A D K+ L++++ KE+ A K GG +P N L ++ A+ +P D ++R
Sbjct: 10 IKRKKAATDQKRGSLFTKLVKEITIAAKMGGGDPNGNPRLRLAIDTARANSMPMDNIQRA 69
Query: 143 IKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
+K+ + E + E YE YG G+++++E TD R+VA +R ++ G + + GS
Sbjct: 70 VKKGTGELEGVTYDEITYEGYGPAGIALIIETATDNRNRTVADIRHIMSRNNGSLGESGS 129
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
V + F+R V++ + AD+DQL++I LDAG ED+ +D+D + YY V++
Sbjct: 130 VAWMFQRKGTVDVLKSAADEDQLMEILLDAGLEDL---------SDDD--DNYYTVITDV 178
Query: 262 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
D+ L EA I +E + +LLP IE++ + E +LI L DD+ AVY++
Sbjct: 179 RQLEDVKKVLDEAAIAYE-NAKIDLLPENYIELEADDAEKVIKLIDALENNDDIQAVYSN 237
>gi|423702281|ref|ZP_17676740.1| UPF0082 protein yeeN [Escherichia coli H730]
gi|433048316|ref|ZP_20235680.1| hypothetical protein WII_02256 [Escherichia coli KTE120]
gi|433120573|ref|ZP_20306248.1| hypothetical protein WKC_01998 [Escherichia coli KTE157]
gi|385710570|gb|EIG47551.1| UPF0082 protein yeeN [Escherichia coli H730]
gi|431565669|gb|ELI38747.1| hypothetical protein WII_02256 [Escherichia coli KTE120]
gi|431643131|gb|ELJ10834.1| hypothetical protein WKC_01998 [Escherichia coli KTE157]
Length = 238
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 129/244 (52%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ +A K+G P+P NT L V+E+AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGATSKIYAKFGVEIYAAAKQGEPDPELNTSLKFVIERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A G E F++ YE +G G I+ E LT + R++A VR + GG
Sbjct: 61 KHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMIIAETLTSNVNRTIANVRTIFNKKGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV + F V+ K TD D + +I L+A E V + +ED Y
Sbjct: 121 IGAAGSVSYMFDNTGVIVFKGTDP--DHIFEILLEA------EVDVRDVTEEEDNIVIY- 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+D + I L+ AGI + E++ + +E+ E +E+ + L+ L + DDV
Sbjct: 172 --TEPTDLHKGIAA-LKAAGITEFSTTELEMIAQSEVELSPEDLEIFEGLVDALEDDDDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QKVY 232
>gi|363580119|ref|ZP_09312929.1| hypothetical protein FbacHQ_01121 [Flavobacteriaceae bacterium
HQM9]
Length = 239
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 130/248 (52%), Gaps = 13/248 (5%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR RK + + AK ++R+GK+++ AVK+GGP+P SN+ L AV++ AK ++P
Sbjct: 1 MGRAFEFRKARKMKRWSAMAKTFTRIGKDIVMAVKEGGPDPASNSRLRAVIQNAKAANMP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
KD VER IK+AS+K Q + E ++E Y G++I+VE TD R+VA VR C G
Sbjct: 61 KDNVERAIKKASDKDQGDYKEVLFEGYAPHGIAILVETATDNNNRTVANVRAAFNKCNGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV F F I D ++L +D GAE++ + DED Y
Sbjct: 121 LGTSGSVEFMFDHTCNFRINAEGIDVEELELEFIDFGAEEIFK--------DEDGILIY- 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+ +++ I +L I +G E +P T E+ + + ++L+ KL E DDV
Sbjct: 172 ---APFESFGAIQKELENRNIEI-LSSGFERIPQVTKELSGDELADVEKLLEKLEEDDDV 227
Query: 316 DAVYTDQI 323
VY +
Sbjct: 228 QNVYHSMV 235
>gi|293375703|ref|ZP_06621975.1| DNA-binding regulatory protein, YebC/PmpR family [Turicibacter
sanguinis PC909]
gi|325838969|ref|ZP_08166752.1| DNA-binding regulatory protein, YebC/PmpR family [Turicibacter sp.
HGF1]
gi|292645646|gb|EFF63684.1| DNA-binding regulatory protein, YebC/PmpR family [Turicibacter
sanguinis PC909]
gi|325490624|gb|EGC92936.1| DNA-binding regulatory protein, YebC/PmpR family [Turicibacter sp.
HGF1]
Length = 241
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 132/247 (53%), Gaps = 18/247 (7%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I K A+DA ++K+ +R GKE+ A K G P+P N LA+V+++AK V
Sbjct: 1 MGRKWNNIKYGKAAKDAARSKVLARFGKEIYMAAKNGDPDPELNRNLASVIDRAKVAGVN 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
++I++R I +A E + YE YG G +++V+ LTD + R+VA VR GGK
Sbjct: 61 REIIDRAINKAKGGSDENYDFIRYEGYGPNGAAVIVDTLTDNVNRTVAEVRSAFNKNGGK 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ G+V F F + F D++L E ++E V+ D +E+ E
Sbjct: 121 IGVSGAVAFMFEATAL--FGFNGNSADEIL--------EGLMEADVDVRDVEEEDGE--I 168
Query: 256 KVVSTSDNYTDITTKLREAGIP-FETDNGSEL--LPITTIEVDDEAMELNKELIAKLLEL 312
V + D + + T L GI FE +EL LP +T+E+D +A+ ++LI L +L
Sbjct: 169 TVYADQDQFHAVQTALNGMGITEFEA---AELTMLPTSTVELDGDALAKFEKLIDVLEDL 225
Query: 313 DDVDAVY 319
DDV VY
Sbjct: 226 DDVQQVY 232
>gi|344923699|ref|ZP_08777160.1| hypothetical protein COdytL_03526 [Candidatus Odyssella
thessalonicensis L13]
Length = 248
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 140/242 (57%), Gaps = 19/242 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKGAQDAK+A++++++ +E+I + + G +P++N L A + A+ ++PKD V+R
Sbjct: 10 IMHRKGAQDAKRARMFAKIAREIIVSARIGA-DPSANPRLRAAMAAARAANMPKDNVDRA 68
Query: 143 IKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+A A E+V YE YG GG +++VE LTD R+ + VR CGG M + GS
Sbjct: 69 IKKAVGGEDTANYEEVRYEGYGPGGTALIVESLTDNRNRTASEVRSAFTKCGGNMGETGS 128
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
V F F R ++ + T D++ + A++AGA+++ E+ D +Y++++T
Sbjct: 129 VAFMFDRVGLIQLSKTVGSYDEVFEKAVEAGADNL------EEGGD------FYEIIATV 176
Query: 262 DNYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
DN+ + + + +E + S+L+ P TI VD+EA + +LI L + DDV VY
Sbjct: 177 DNFAAVRDAISQ---DYEDISESKLVWRPQNTIAVDEEAAQKILKLIDTLEDNDDVQNVY 233
Query: 320 TD 321
+
Sbjct: 234 CN 235
>gi|449018547|dbj|BAM81949.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 323
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 100/317 (31%), Positives = 153/317 (48%), Gaps = 36/317 (11%)
Query: 17 ISNGVSSKWSPNSFALSKHGLLSRNLFSSASSISSWIPLYEVKHCNFQVRTIRT--FAPV 74
+ NG W+ + + S+H + S L S S ++ PL R RT +
Sbjct: 16 VPNGSRVPWARRARSSSEHQVPSGRLRRSVRSQTAVHPLDR--------RIARTGGVLSL 67
Query: 75 CMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDV 134
MGRR +KI RK A + + KL++R GK ++ K GG + A++ +A E V
Sbjct: 68 HMGRRYAKIMARKQASELARVKLFARYGKRIVQTAKAGGD-------VDAIVREAIERGV 120
Query: 135 PKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGG 194
PK+ V R + +AS Q F +YE++G GV I+VE LTD + R+ A VR V + G
Sbjct: 121 PKENVARALTKASASEQANFESAIYELFGPHGVGILVEALTDNLNRTAAEVRLVARKAGL 180
Query: 195 KMADPGSVMFKFRRARVV-------NIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTD 247
+MA G+V F R + + + + D D LL I DAGA+D+ + DDT
Sbjct: 181 QMASAGAVQHLFERKGCIRAFVSEEDAESSQFDPDSLLLIVADAGADDLQH--LAMDDTP 238
Query: 248 EDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIA 307
R+E + V + + L AG+ T SEL+ + + + E +++LI
Sbjct: 239 MGRSE--FLVWTPPGALAQVAQALTTAGVKLST---SELVMVPKL-IPPPVSEADRDLIH 292
Query: 308 KLLE----LDDVDAVYT 320
+E +DDVD VYT
Sbjct: 293 AGVEALQAIDDVDQVYT 309
>gi|256823082|ref|YP_003147045.1| hypothetical protein Kkor_1865 [Kangiella koreensis DSM 16069]
gi|256796621|gb|ACV27277.1| protein of unknown function DUF28 [Kangiella koreensis DSM 16069]
Length = 247
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 135/243 (55%), Gaps = 16/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAK+ K+++++ +E++ A K+GG +P N L A ++KA ++ KD +E
Sbjct: 8 ANIKHRKAAQDAKRGKIFTKIIRELVVAAKEGGGDPNDNPRLRAAMDKALGANMKKDTIE 67
Query: 141 RNIKRASEKGQ-EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
+ I+R + + + + E YE YG GGV+I+VE +TD R+V VR GG +
Sbjct: 68 KAIERGTGNAEGDNYEELTYEGYGPGGVAILVECMTDNKNRTVGEVRHAFTKHGGNLGTN 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F + I + +++ L++ AL+AGAED + + D + +++ +
Sbjct: 128 GSVAYLFEKKGQF-IFGDNVEEEALMEAALEAGAEDFV---AHNDGS--------FELQT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
T +++ DI L +AG FE +N +LP T E+D L+ +L ELDD V
Sbjct: 176 TPEDFLDIKEALVKAG--FEPENAEVSMLPSTQAELDVNDGAKVIRLVDRLEELDDTQNV 233
Query: 319 YTD 321
YT+
Sbjct: 234 YTN 236
>gi|254475462|ref|ZP_05088848.1| conserved hypothetical protein TIGR01033 [Ruegeria sp. R11]
gi|214029705|gb|EEB70540.1| conserved hypothetical protein TIGR01033 [Ruegeria sp. R11]
Length = 246
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 125/241 (51%), Gaps = 13/241 (5%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKG QDA ++KL+S++ KE+ A K G P+P N L +++AK VPKD+++
Sbjct: 8 ANIQHRKGRQDAARSKLFSKLSKEITVAAKMGDPDPEKNPRLRLAVKEAKSQSVPKDVID 67
Query: 141 RNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
R IK++ E++ E YE YG GV+++VE +TD R+ + VR GG + + G
Sbjct: 68 RAIKKSQGGDAESYDEIRYEGYGPNGVAVIVETMTDNKNRTASTVRSTFSKNGGNLGETG 127
Query: 201 SVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
SV F F R V + D D ++ A++AGAEDV + +E + +
Sbjct: 128 SVGFMFDRKGEVTYPASVGDADTVMMAAIEAGAEDV------------ESSEEGHLIYCA 175
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ +++ L EA + P TT E+D E M+ +L+ L + DDV V T
Sbjct: 176 DTDLHEVSNAL-EAELGESESTKLVWKPTTTTELDLEGMQKLMKLVDALEDDDDVQRVTT 234
Query: 321 D 321
+
Sbjct: 235 N 235
>gi|168234626|ref|ZP_02659684.1| conserved hypothetical protein TIGR01033 [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|194737494|ref|YP_002117414.1| hypothetical protein SeSA_A4750 [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|194712996|gb|ACF92217.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197291716|gb|EDY31066.1| conserved hypothetical protein TIGR01033 [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
Length = 238
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 131/244 (53%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ +A K+G P+P SN+ L V+E+AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGATSKVYAKFGVEIYAAAKQGEPDPESNSALKFVIERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A G E F++ YE +G G ++ E LT + R++A +R + GG
Sbjct: 61 KHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMVIAETLTSNVNRTIANIRTIFNKKGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ G+V + F V+ K TD D + +I LDA DV D T+E+ Y
Sbjct: 121 IGAAGAVSYMFDNTGVIVFKGTDP--DHIFEILLDAEV-DV------RDVTEEEGNIVIY 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+D + I L+ AGI + E++ + +E+ E +E+ + LI L + DDV
Sbjct: 172 --TEATDLHKGIAA-LKAAGITEFSTTELEMIAQSEVELSPEDLEIFEGLIDALEDDDDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QKVY 232
>gi|392531870|ref|ZP_10279007.1| hypothetical protein CmalA3_14227 [Carnobacterium maltaromaticum
ATCC 35586]
Length = 241
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 130/242 (53%), Gaps = 16/242 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
S I GRK AQDAK+ +++ ++ +E+ AVK GGP+P++N L +++KAK ++P D V+
Sbjct: 8 SNIQGRKNAQDAKRGQIFQKISREIYMAVKSGGPDPSTNPQLRMMIDKAKSANMPNDNVK 67
Query: 141 RNIKRASEKGQ-EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I + S+ G+ E + E YE YG G++++V LTD R+ VR GG + +
Sbjct: 68 RAIAKGSQSGEGENYEEITYEGYGPNGIAVLVHTLTDNRNRTGTNVRVAFNKNGGSLGET 127
Query: 200 GSVMFKFRRARVVNIKFTD--ADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV + F R + I+ D D+D +L L+AG ED+ + ++ +++
Sbjct: 128 GSVSYMFDRKGYLAIERRDLAVDEDTMLMSVLEAGGEDM------------ETSDEVFEI 175
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ ++ + L +G + ++P TT E+ + L + ++ KL E DDV
Sbjct: 176 YTEPSDFISVRDALEASGYKLAQAEIT-MVPQTTNELPADKRALFQTMLDKLEEDDDVSE 234
Query: 318 VY 319
V+
Sbjct: 235 VF 236
>gi|433448689|ref|ZP_20411555.1| hypothetical protein WCNC_01575 [Weissella ceti NC36]
gi|429539616|gb|ELA07652.1| hypothetical protein WCNC_01575 [Weissella ceti NC36]
Length = 240
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 132/241 (54%), Gaps = 16/241 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +++ + K GG +P SN L V++KAK ++PK+ ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKISRDLYTVAKDGGADPASNASLRLVMDKAKAANMPKENIQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ +AS G + E YE YG G++++V+ LTD R+ A++R K GG++ GSV
Sbjct: 70 LDKASGAGGANYQELTYEGYGPAGLAVLVQALTDNTNRTAASIRASFKHFGGELGATGSV 129
Query: 203 MFKFRRARVVNIKF---TDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
++F R + I T+ D+DQL + L+AGA+D+ T +D+ +++ +
Sbjct: 130 AYQFERKGYIEIPRDGETEIDEDQLFEDMLEAGADDM--------KTYDDQ----FEIYT 177
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ ++ L E G D + ++ +EV + E L+ +L DDV AV+
Sbjct: 178 EPKAFPEVRDALTEKGYTLVNDEVT-MIAENPMEVPADKQETLVNLVDELEANDDVVAVF 236
Query: 320 T 320
T
Sbjct: 237 T 237
>gi|167855801|ref|ZP_02478554.1| hypothetical protein HPS_03174 [Haemophilus parasuis 29755]
gi|167853080|gb|EDS24341.1| hypothetical protein HPS_03174 [Haemophilus parasuis 29755]
Length = 246
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 137/241 (56%), Gaps = 17/241 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDA++ K+++++ +E+++A K GG + +SN L A ++KA ++ +D +
Sbjct: 8 ANIKHRKAAQDAQRGKIFTKLIRELVTAAKLGGGDTSSNPRLRAAVDKALSNNMTRDTIN 67
Query: 141 RNIKRASEKGQEAFIE-KVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I R G + +E KVYE YG GG +++VE L+D R+++ VR CGG +
Sbjct: 68 RAIDRGVGGGDDTNMETKVYEGYGPGGTAVMVECLSDNANRTISQVRPSFTKCGGNLGTE 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F + ++ I AD+D L + A++AGA+D I+P ED + +++ +
Sbjct: 128 GSVGYLFSKKGLILI--ASADEDALTEAAIEAGADD-IQP--QEDSS--------FEIYT 174
Query: 260 TSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
++ + + AG F+ +N ++P TT+++D E +LI +L + DDV V
Sbjct: 175 AWEDLGAVRDGIEAAG--FKVENAEVTMIPSTTVQLDAETAPKLLDLINRLEDCDDVQNV 232
Query: 319 Y 319
Y
Sbjct: 233 Y 233
>gi|163756058|ref|ZP_02163174.1| hypothetical protein KAOT1_09341 [Kordia algicida OT-1]
gi|161323932|gb|EDP95265.1| hypothetical protein KAOT1_09341 [Kordia algicida OT-1]
Length = 236
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 127/244 (52%), Gaps = 13/244 (5%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR RK + + AK ++R+GK+++ AVK+GGPNP +N+ L AV++ AK ++P
Sbjct: 1 MGRAFEFRKARKMKRWSAMAKTFTRIGKDIVMAVKEGGPNPDTNSRLRAVIQNAKAANMP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
KD VER IK+AS+K E + E ++E YG G++I+VE TD R+VA VR C G
Sbjct: 61 KDNVERAIKKASDKNTENYKEVLFEGYGPHGIAILVETATDNNNRTVANVRSYFNKCDGS 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV F F I D ++L +D G E+V D+D Y
Sbjct: 121 LGTQGSVEFMFDHTCNFRIPAEGQDAEELELEFIDFGVEEVF--------ADDDGILLY- 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+++ I +L I +G E +P T +++E ++L+ KL E DDV
Sbjct: 172 ---GPFESFGAIQKELENREIEI-LSSGFERIPQVTKPLNEEETADIEKLLEKLEEDDDV 227
Query: 316 DAVY 319
VY
Sbjct: 228 QNVY 231
>gi|407691786|ref|YP_006816575.1| hypothetical protein ASU2_00970 [Actinobacillus suis H91-0380]
gi|407387843|gb|AFU18336.1| hypothetical protein ASU2_00970 [Actinobacillus suis H91-0380]
Length = 246
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 139/241 (57%), Gaps = 17/241 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDA++ K+++++ +E+++A K GG + ++N L + ++KA ++ +D +
Sbjct: 8 ANIKHRKAAQDAQRGKIFTKLIRELVTAAKLGGGDVSANPRLRSAVDKALSNNMTRDTIN 67
Query: 141 RNIKRASEKGQEAFIE-KVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I+R G + +E K+YE YG GG +++VE L+D R+++ VR CGG +
Sbjct: 68 RAIERGVGGGDDTNMETKIYEGYGPGGTAVMVECLSDNANRTISQVRPSFTKCGGNLGTE 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F + ++ I D+D L + A++AGA+D I+P ED + +++ +
Sbjct: 128 GSVGYLFSKKGLILI--ASGDEDSLTEAAIEAGADD-IQP--QEDGS--------FEIYT 174
Query: 260 TSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
++ D+ + +AG F+ +N ++P TT+E+D E +LI +L + DDV V
Sbjct: 175 AWEDLGDVRDGIEKAG--FKIENAEVTMIPSTTVELDAETAPKLLDLINRLEDCDDVQNV 232
Query: 319 Y 319
Y
Sbjct: 233 Y 233
>gi|403070243|ref|ZP_10911575.1| hypothetical protein ONdio_11742 [Oceanobacillus sp. Ndiop]
Length = 243
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 87/243 (35%), Positives = 132/243 (54%), Gaps = 22/243 (9%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RK AQDAKK K++ R K++ A K+GG + ++N VL A +EKAK ++P D ++RN
Sbjct: 10 IQKRKNAQDAKKGKIFMRHAKDIYIAAKQGGADLSTNAVLRAAVEKAKADNMPNDNIDRN 69
Query: 143 IKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+A+ A E++ YE YG GGV+++V VLTD R+ A VR K GG + + GS
Sbjct: 70 IKKATGTLDGATYEEITYEGYGPGGVAVIVNVLTDNKNRTAAEVRHAFKKNGGNLGENGS 129
Query: 202 VMFKFRRARVVNIKFTDA--DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
V F F R + I DA ++D + AL+AGAED+ +D A Y++ +
Sbjct: 130 VSFMFDRKGYIVITNDDASINEDAITMDALEAGAEDI---------AVQDGA---YEIFT 177
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELL---PITTIEVDDEAMELNKELIAKLLELDDVD 316
+N+ ++ L G +E +G L + +DE +N LI L E +DV
Sbjct: 178 EPENFQTVSEHLTANG--YEISDGEVTLIAQNYNQLAPEDEQKMMN--LIETLEESEDVQ 233
Query: 317 AVY 319
++
Sbjct: 234 DIH 236
>gi|395780701|ref|ZP_10461158.1| UPF0082 protein [Bartonella washoensis 085-0475]
gi|423711704|ref|ZP_17686009.1| UPF0082 protein [Bartonella washoensis Sb944nv]
gi|395413371|gb|EJF79841.1| UPF0082 protein [Bartonella washoensis Sb944nv]
gi|395418101|gb|EJF84432.1| UPF0082 protein [Bartonella washoensis 085-0475]
Length = 248
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 127/240 (52%), Gaps = 15/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++S++ +E+ A K+G P+P N L ++ AK +PKD +ER
Sbjct: 10 IMHRKGRQDAMRSKIFSKLAREITVAAKQGAPDPAMNPRLRLAVQNAKAQSMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+AS E + E YE YG GGV+++VE LTD R+ + VR GG + + GSV
Sbjct: 70 IKKASGNDVEHYDEVRYEGYGPGGVAVIVEALTDNRNRTASNVRAAFTKSGGALGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R + K D ++D A++AGAEDV E + + +
Sbjct: 130 SFMFNRIGEIIYKREAGTADSIMDAAIEAGAEDV------------QSEETGHHITCAFE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELN-KELIAKLLELDDVDAVYTD 321
+ ++ +K+ EA + E ++ + TT+ DE L+ +LI+ L E DDV VY +
Sbjct: 178 DIGEV-SKMLEAKLG-EAESIKTIWKATTLAPVDEEKALSVLKLISTLEEDDDVQNVYAN 235
>gi|313888243|ref|ZP_07821914.1| DNA-binding regulatory protein, YebC/PmpR family [Peptoniphilus
harei ACS-146-V-Sch2b]
gi|312845646|gb|EFR33036.1| DNA-binding regulatory protein, YebC/PmpR family [Peptoniphilus
harei ACS-146-V-Sch2b]
Length = 241
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 131/245 (53%), Gaps = 17/245 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +KG +DA++ K+++++ +++ A K+GG +P N L ++KAK ++P D
Sbjct: 6 KWNNIKNKKGKEDARRGKIFTKLARQITVAAKEGGLDPDYNPSLKVAIDKAKAENMPNDN 65
Query: 139 VERNIKRASE-KGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ER I +A + F E VYE YG GGV+++V LTD R+ +R + G +
Sbjct: 66 IERAIAKAGGGDNDDNFEEIVYEGYGPGGVAVMVHCLTDNRNRTAPEIRHLFDKFAGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
PG V F F + + + D+D+ IA+DAGAEDV+ DR E +++
Sbjct: 126 QPGCVSFMFDKKGSLGVLKEGLDEDEFTLIAIDAGAEDVV-----------DRGEA-FEI 173
Query: 258 VSTSDNYTDITTKLREAGIPF-ETDNGSELLPITTIEVDDEAMELNKE-LIAKLLELDDV 315
++ ++Y ++ L + G F E+D +P T +DDE N E LI L + DDV
Sbjct: 174 ITEPEDYHNVRKALEDEGHSFIESD--ITYIPQTETALDDEDDIKNMEKLIDALEDNDDV 231
Query: 316 DAVYT 320
V+T
Sbjct: 232 TDVFT 236
>gi|209543388|ref|YP_002275617.1| hypothetical protein Gdia_1219 [Gluconacetobacter diazotrophicus
PAl 5]
gi|209531065|gb|ACI51002.1| protein of unknown function DUF28 [Gluconacetobacter diazotrophicus
PAl 5]
Length = 249
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 131/240 (54%), Gaps = 14/240 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKGAQDA++A+ ++++ +E+ A + G P+P SN L A + A+E+++PKD VER
Sbjct: 10 IMHRKGAQDARRARQFAKVIREITVAARSGMPDPASNPRLRAAISAAREVNMPKDTVERA 69
Query: 143 IKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+A+ G + + E YE YG GV+++VE LTD R+ + VR GG + + S
Sbjct: 70 IKKATGAGGGDDYAEVRYEGYGPAGVAVIVEALTDNRNRTASDVRAAFSKHGGSLGETNS 129
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
V F F R V+ A +D++L+ A++AGAE+V + TDE ++V
Sbjct: 130 VSFMFTRLGVITYPAAVATEDEMLEAAIEAGAENV-------ESTDEG-----HEVTCPV 177
Query: 262 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+++ + L E + + P T + +D++ +LI L E DDV AVY +
Sbjct: 178 ESFFAVRDAL-ETRFGEPSSAKFDWRPGTVVTLDEDKARGVLKLIDVLDEHDDVQAVYAN 236
>gi|319406246|emb|CBI79883.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
Length = 248
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 92/154 (59%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++S++ +E+ A K+G P+PT N L ++ AK +PKD +ER
Sbjct: 10 IMHRKGRQDAMRSKIFSKLAREITVAAKQGSPDPTMNPRLRLAVQNAKAQSMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+AS E + E YE YG GGV+++VE LTD R+ + VR GG + + GSV
Sbjct: 70 IKKASGGDAENYDEVRYEGYGPGGVAVIVEALTDNRNRTASNVRAAFTKSGGALGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDV 236
F F R + K D +++ A++AGAEDV
Sbjct: 130 GFMFNRIGEIIYKLESGTADTIMEAAIEAGAEDV 163
>gi|299822805|ref|ZP_07054691.1| glucose-1-phosphate adenylyltransferase [Listeria grayi DSM 20601]
gi|299816334|gb|EFI83572.1| glucose-1-phosphate adenylyltransferase [Listeria grayi DSM 20601]
Length = 245
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 132/244 (54%), Gaps = 17/244 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I GRK AQDAK+AK + ++ KE+ A K GG +P N L V++KAK ++P D ++
Sbjct: 11 NNIQGRKNAQDAKRAKTFQKIAKELYVAAK-GGADPDMNPSLRLVMDKAKAANMPNDNIK 69
Query: 141 RNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I +A+ E + E YE YG GV+++V LTD R+ VR GG + +
Sbjct: 70 RAIDKATGANATENYEEVTYEGYGPAGVAVLVHALTDNKNRTSTNVRVGFNKNGGSLGET 129
Query: 200 GSVMFKFRRARVVNIKFTDA--DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G+V + F R + I+ TD ++D + A++AGAEDV P ++V
Sbjct: 130 GTVNYLFDRKGYLVIERTDTEVEEDNFMLEAIEAGAEDVFVYP------------EVFEV 177
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
++ ++T + L++AG F N + P TTIEV ++ E +++I L E DDV
Sbjct: 178 LTDPSDFTAVKDSLQDAGYVFAEANLI-MKPQTTIEVPEDKKEQLEQMIDVLEEDDDVQE 236
Query: 318 VYTD 321
VYT+
Sbjct: 237 VYTN 240
>gi|420373109|ref|ZP_14873279.1| hypothetical protein SF123566_3282 [Shigella flexneri 1235-66]
gi|391317612|gb|EIQ74890.1| hypothetical protein SF123566_3282 [Shigella flexneri 1235-66]
Length = 238
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 128/244 (52%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I G+K A+D +K+YS+ G E+ +A K+G P+P NT L V+E+AK+ VP
Sbjct: 1 MGRKWANIVGKKTAKDGATSKVYSKFGVEIYAAAKQGEPDPELNTALKFVIERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A E F++ YE +G G I+ E LT + R++A +R + GG
Sbjct: 61 KHVIDKAIDKAKGGSDETFMQGRYEGFGPSGSMIIAETLTSNVNRTIANIRSIFNKKGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV + F V+ K TD D + +I L+A V+ D E+
Sbjct: 121 IGAAGSVSYMFDNTGVIVFKGTDP--DHIFEILLEA--------EVDVRDVTEEEGNIII 170
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
ST D + I L+ AGI + E++ + +E+ E +E+ + L+ L + DDV
Sbjct: 171 YTEST-DLHKGIAA-LKAAGITEFSTTELEMIAQSEVELSPEDLEIFEGLVDALEDDDDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QKVY 232
>gi|321314412|ref|YP_004206699.1| hypothetical protein BSn5_15320 [Bacillus subtilis BSn5]
gi|384174359|ref|YP_005555744.1| hypothetical protein I33_0774 [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|386757355|ref|YP_006230571.1| hypothetical protein MY9_0776 [Bacillus sp. JS]
gi|418034225|ref|ZP_12672701.1| hypothetical protein BSSC8_36450 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|428278170|ref|YP_005559905.1| hypothetical protein BSNT_01165 [Bacillus subtilis subsp. natto
BEST195]
gi|430757220|ref|YP_007210598.1| hypothetical protein A7A1_1728 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|291483127|dbj|BAI84202.1| hypothetical protein BSNT_01165 [Bacillus subtilis subsp. natto
BEST195]
gi|320020686|gb|ADV95672.1| hypothetical protein BSn5_15320 [Bacillus subtilis BSn5]
gi|349593583|gb|AEP89770.1| conserved hypothetical protein [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|351469169|gb|EHA29365.1| hypothetical protein BSSC8_36450 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|384930637|gb|AFI27315.1| hypothetical protein MY9_0776 [Bacillus sp. JS]
gi|430021740|gb|AGA22346.1| Hypothetical protein YeeI [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 239
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 128/244 (52%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K ++DA +++Y++ G+E+ A K+G P+P SN L VLE+AK VP
Sbjct: 1 MGRKWNNIKEKKASKDANTSRIYAKFGREIYVAAKQGEPDPESNQALKVVLERAKTYSVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K+I+ER I++A +E + E YE +G G I+V+ LT+ + R+ VR GG
Sbjct: 61 KNIIERAIEKAKGGAEENYDELRYEGFGPNGSMIIVDALTNNVNRTAPEVRAAFGKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
M GSV + F V+ ++ AD+ + + D D++E EDD+
Sbjct: 121 MGVSGSVAYMFDATAVIGVEGKTADEALEILMEADVDVRDILE----EDDS--------V 168
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
V + D + + + AG+ T +L + + + D+A E ++LI L +L+DV
Sbjct: 169 IVYAEPDQFHAVQEAFKNAGVEEFTVAELTMLAQSEVTLPDDAKEQFEKLIDALEDLEDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QQVY 232
>gi|429753994|ref|ZP_19286749.1| DNA-binding regulatory protein, YebC/PmpR family [Capnocytophaga
sp. oral taxon 326 str. F0382]
gi|429170881|gb|EKY12541.1| DNA-binding regulatory protein, YebC/PmpR family [Capnocytophaga
sp. oral taxon 326 str. F0382]
Length = 239
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 129/244 (52%), Gaps = 13/244 (5%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR RK + A AK ++R+GK+++ AVK+GGP+P +N+ L AV++ AK ++P
Sbjct: 1 MGRAFEFRKARKFKRWAAMAKTFTRIGKDIVMAVKEGGPHPETNSRLRAVIQNAKAANMP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K+ +ER IK+ASEK + E ++E Y G+++++E TD R+VA +R C G
Sbjct: 61 KENIERAIKKASEKDTANYKEVLFEGYAPHGIALLIETATDNNNRTVANIRSYFNKCNGT 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV F F I T D ++L +D GAE+V V+ED
Sbjct: 121 LGTSGSVEFMFDHTCNFRINATGIDPEELELEMIDFGAEEVF---VDEDGI--------- 168
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+ + +++ I +L GI +G E +P T E+ E ++L+ K+ E +DV
Sbjct: 169 LIYAPFESFGAIQKELESRGIEI-LSSGFERIPQVTKELTPEEQADVEKLLEKIEEDEDV 227
Query: 316 DAVY 319
VY
Sbjct: 228 QNVY 231
>gi|366157882|ref|ZP_09457744.1| hypothetical protein ETW09_02960 [Escherichia sp. TW09308]
gi|432371937|ref|ZP_19614987.1| hypothetical protein WCO_00962 [Escherichia coli KTE11]
gi|430898266|gb|ELC20401.1| hypothetical protein WCO_00962 [Escherichia coli KTE11]
Length = 238
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 130/244 (53%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ +A K+G P+P NT L V+E+AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGATSKIYAKFGVEIYAAAKQGEPDPELNTSLKFVIERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A G E F++ YE +G G I+ E LT + R++A VR + GG
Sbjct: 61 KHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMIIAETLTSNVNRTIANVRTIFNKKGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV + F V+ K TD D + +I LDA DV D T+E+ Y
Sbjct: 121 IGAAGSVSYMFDNTGVIVFKGTDP--DHIFEILLDAEV-DV------RDVTEEEGNIVIY 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+D + I L+ AGI + E++ + +E+ E +E+ + L+ L + DDV
Sbjct: 172 --TEPTDLHKGIAA-LKAAGITEFSTTELEMIAQSEVELSPEDLEIFEGLVDALEDDDDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QKVY 232
>gi|15606702|ref|NP_214082.1| hypothetical protein aq_1575 [Aquifex aeolicus VF5]
gi|6226456|sp|O67517.1|Y1575_AQUAE RecName: Full=Probable transcriptional regulatory protein aq_1575
gi|2983942|gb|AAC07491.1| hypothetical protein aq_1575 [Aquifex aeolicus VF5]
Length = 249
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 133/244 (54%), Gaps = 17/244 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
++I +K DA++ KL+S++ +E+I A + GGPNP N L +E+AK+ ++P + +E
Sbjct: 8 AQIKHKKAKVDAQRGKLFSKLIREIIVATRLGGPNPEFNPRLRTAIEQAKKANMPWENIE 67
Query: 141 RNIKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+ A E E F E +YE Y GGV+++V TD R+ + VR V GG +
Sbjct: 68 RAIKKGAGELEGEQFEEVIYEGYAPGGVAVMVLATTDNRNRTTSEVRHVFTKHGGNLGAS 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
G V + F R + + + +++LL+ A++ GAEDV +P E + + +
Sbjct: 128 GCVSYLFERKGYIEVPAKEVSEEELLEKAIEVGAEDV-QP-----------GEEVHIIYT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDE--AMELNKELIAKLLELDDVDA 317
+ ++ L + G+P E + PI+T++++DE A ++ K L+ L ELDDV
Sbjct: 176 VPEELYEVKENLEKLGVPIEKAQIT-WKPISTVQINDEETAQKVIK-LLNALEELDDVQQ 233
Query: 318 VYTD 321
V +
Sbjct: 234 VIAN 237
>gi|390448461|ref|ZP_10234081.1| hypothetical protein A33O_02289 [Nitratireductor aquibiodomus RA22]
gi|389666202|gb|EIM77657.1| hypothetical protein A33O_02289 [Nitratireductor aquibiodomus RA22]
Length = 249
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 125/239 (52%), Gaps = 13/239 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++S++ +E+ A K G P+P N L ++ AK +PKD +ER
Sbjct: 10 IMHRKGRQDAVRSKMFSKLAREITVAAKMGLPDPAMNPRLRLAIQNAKAQSMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A+ E + E YE YG GGV+++VE LTD RS + +R GG + + GSV
Sbjct: 70 IKKAAGGDAENYDEVRYEGYGPGGVAVIVEALTDNRNRSASNIRAAFTKAGGSLGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R + D D +++ A++AGAEDV +DE+ + + +
Sbjct: 130 AFMFDRVGEIIYPTDKGDADTVMEAAIEAGAEDV--------QSDENG----HVITCAFE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ D+T L EA + + P T VD+E + +L+A L + DDV VY +
Sbjct: 178 DIGDVTAAL-EASLGEAESVKAIWRPQTGTPVDEERAQSILKLVATLEDDDDVQNVYAN 235
>gi|297717820|gb|ADI50053.1| hypothetical protein [Candidatus Odyssella thessalonicensis L13]
Length = 247
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 140/242 (57%), Gaps = 19/242 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKGAQDAK+A++++++ +E+I + + G +P++N L A + A+ ++PKD V+R
Sbjct: 10 IMHRKGAQDAKRARMFAKIAREIIVSARIGA-DPSANPRLRAAMAAARAANMPKDNVDRA 68
Query: 143 IKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+A A E+V YE YG GG +++VE LTD R+ + VR CGG M + GS
Sbjct: 69 IKKAVGGEDTANYEEVRYEGYGPGGTALIVESLTDNRNRTASEVRSAFTKCGGNMGETGS 128
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
V F F R ++ + T D++ + A++AGA+++ E+ D +Y++++T
Sbjct: 129 VAFMFDRVGLIQLSKTVGSYDEVFEKAVEAGADNL------EEGGD------FYEIIATV 176
Query: 262 DNYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
DN+ + + + +E + S+L+ P TI VD+EA + +LI L + DDV VY
Sbjct: 177 DNFAAVRDAISQ---DYEDISESKLVWRPQNTIAVDEEAAQKILKLIDTLEDNDDVQNVY 233
Query: 320 TD 321
+
Sbjct: 234 CN 235
>gi|440781780|ref|ZP_20960008.1| hypothetical protein F502_07568 [Clostridium pasteurianum DSM 525]
gi|440220498|gb|ELP59705.1| hypothetical protein F502_07568 [Clostridium pasteurianum DSM 525]
Length = 245
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 131/239 (54%), Gaps = 16/239 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I +KG DA++ K+++++GKE I+ K G NP +N L V+ KAK ++P+D + R
Sbjct: 10 IQAKKGKADAQRGKIFTKIGKE-IAVASKAGSNPDTNAKLRDVIAKAKANNMPQDTITRA 68
Query: 143 IKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+ A E + E VYE YG GV+++V VLTD RS VR + GG + G
Sbjct: 69 IKKGAGELEGVNYEEIVYEGYGPAGVAVIVNVLTDNKNRSAGNVRYIFDRNGGNLGANGC 128
Query: 202 VMFKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
V F F+R + I+ D D+D+++ ALDAGAED + E +++ +
Sbjct: 129 VSFMFQRKGQIIIERKDGLDEDEVMMAALDAGAEDF------------NAEEEAFEITTA 176
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
++++ + L EAG F + + ++P T +++ E E ++LI KL + DDV VY
Sbjct: 177 MEDFSQVRESLEEAGYEFASAELT-MIPDTYTQLNLEDSEKVQKLIDKLEDDDDVQDVY 234
>gi|398824505|ref|ZP_10582833.1| DNA-binding regulatory protein, YebC/PmpR family [Bradyrhizobium
sp. YR681]
gi|398224820|gb|EJN11114.1| DNA-binding regulatory protein, YebC/PmpR family [Bradyrhizobium
sp. YR681]
Length = 248
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 83/241 (34%), Positives = 130/241 (53%), Gaps = 17/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA+K+KL+ ++ +E+ A K G P+P N L A + A++ ++PKD +ER
Sbjct: 10 IMHRKGRQDAQKSKLFGKLAREITVAAKLGTPDPAMNPRLRAAIIAARQENMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+K+A E + E YE YG GGV+++VE LTD R+ + +R GG + + GSV
Sbjct: 70 VKKALGNEGENYDEIRYEGYGPGGVAVIVEALTDNRNRAASDIRSFFTKSGGNLGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R ++ + AD D +LD A++AGA+DV+ E +++ ++++
Sbjct: 130 SFMFDRTGIIEYDRSVADDDAVLDAAIEAGADDVVS------------GEGGHEIYASTE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
Y D+ L F + L+ P T+ VDDE E +L+ L E DDV VY
Sbjct: 178 GYRDVAKALE---AKFGEPRKAALIWKPQNTVAVDDETGEKLLKLMDLLNEHDDVQHVYA 234
Query: 321 D 321
+
Sbjct: 235 N 235
>gi|295092959|emb|CBK82050.1| conserved hypothetical protein TIGR01033 [Coprococcus sp. ART55/1]
Length = 249
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 133/245 (54%), Gaps = 17/245 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +K DA K K+++ +GKE++ AVK+GG NP +N+ L V+ KAK ++P D
Sbjct: 6 KFANIKHKKEKNDAAKGKIFTIIGKEIVVAVKEGGANPENNSKLRDVIAKAKANNMPNDT 65
Query: 139 VERNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
++R I+RA+ ++ YE YG G +I+V+ LTD R+ A VR GG +
Sbjct: 66 IKRGIERAAGDANSVNYVVNTYEGYGPNGTAIIVDTLTDNKNRTAANVRNCFTKGGGNVG 125
Query: 198 DPGSV--MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
G V MF + ++ + D D D L+ +ALDAGAED +DED + Y
Sbjct: 126 TTGCVSYMFDHKGQIIIAKEDCDIDADDLMMMALDAGAEDF---------SDEDDS---Y 173
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDD-EAMELNKELIAKLLELDD 314
++++ ++++ + L + GI + ++P +++DD E ++ +I L E DD
Sbjct: 174 EIITAPEDFSQVRESLEKEGIKM-AEAELTMIPQNYVDIDDPEVVKKFTRIIDMLEEDDD 232
Query: 315 VDAVY 319
V AVY
Sbjct: 233 VQAVY 237
>gi|260868636|ref|YP_003235038.1| hypothetical protein ECO111_2631 [Escherichia coli O111:H- str.
11128]
gi|415823227|ref|ZP_11511746.1| hypothetical protein ECOK1180_4553 [Escherichia coli OK1180]
gi|417191869|ref|ZP_12013969.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
4.0522]
gi|417206466|ref|ZP_12019441.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
JB1-95]
gi|417592183|ref|ZP_12242880.1| hypothetical protein EC253486_2787 [Escherichia coli 2534-86]
gi|419197396|ref|ZP_13740787.1| hypothetical protein ECDEC8A_2498 [Escherichia coli DEC8A]
gi|419203925|ref|ZP_13747113.1| hypothetical protein ECDEC8B_2826 [Escherichia coli DEC8B]
gi|419221901|ref|ZP_13764826.1| hypothetical protein ECDEC8E_2701 [Escherichia coli DEC8E]
gi|419892696|ref|ZP_14412705.1| hypothetical protein ECO9570_03332 [Escherichia coli O111:H8 str.
CVM9570]
gi|419898234|ref|ZP_14417796.1| hypothetical protein ECO9574_16140 [Escherichia coli O111:H8 str.
CVM9574]
gi|420091627|ref|ZP_14603369.1| hypothetical protein ECO9602_03082 [Escherichia coli O111:H8 str.
CVM9602]
gi|420098294|ref|ZP_14609570.1| hypothetical protein ECO9634_13883 [Escherichia coli O111:H8 str.
CVM9634]
gi|424772174|ref|ZP_18199288.1| hypothetical protein CFSAN001632_16083 [Escherichia coli O111:H8
str. CFSAN001632]
gi|257764992|dbj|BAI36487.1| conserved predicted protein [Escherichia coli O111:H- str. 11128]
gi|323177182|gb|EFZ62772.1| hypothetical protein ECOK1180_4553 [Escherichia coli OK1180]
gi|345338520|gb|EGW70947.1| hypothetical protein EC253486_2787 [Escherichia coli 2534-86]
gi|378047714|gb|EHW10074.1| hypothetical protein ECDEC8A_2498 [Escherichia coli DEC8A]
gi|378049303|gb|EHW11646.1| hypothetical protein ECDEC8B_2826 [Escherichia coli DEC8B]
gi|378065927|gb|EHW28066.1| hypothetical protein ECDEC8E_2701 [Escherichia coli DEC8E]
gi|386190751|gb|EIH79497.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
4.0522]
gi|386197631|gb|EIH91831.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
JB1-95]
gi|388347121|gb|EIL12813.1| hypothetical protein ECO9570_03332 [Escherichia coli O111:H8 str.
CVM9570]
gi|388354048|gb|EIL19003.1| hypothetical protein ECO9574_16140 [Escherichia coli O111:H8 str.
CVM9574]
gi|394381737|gb|EJE59406.1| hypothetical protein ECO9634_13883 [Escherichia coli O111:H8 str.
CVM9634]
gi|394382646|gb|EJE60274.1| hypothetical protein ECO9602_03082 [Escherichia coli O111:H8 str.
CVM9602]
gi|421938885|gb|EKT96425.1| hypothetical protein CFSAN001632_16083 [Escherichia coli O111:H8
str. CFSAN001632]
Length = 238
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 128/244 (52%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ +A K+G P+P NT L V+E+AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGATSKIYAKFGVEIYAAAKQGEPDPELNTSLKFVIERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A G E F++ YE +G G I+ E LT + R++A VR + GG
Sbjct: 61 KHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMIIAETLTSNVNRTIANVRTIFNKKGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV + F V I F +D D + +I L+A V+ D E+ E
Sbjct: 121 IGAAGSVSYMFDNTGV--IVFKGSDPDHIFEILLEA--------EVDVRDVTEE--EGNI 168
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+ + + + L+ AGI + E++ + +E+ E +E+ + L+ L + DDV
Sbjct: 169 VIYTEPTDLHKVIAALKAAGITEFSTTELEMIAQSEVELSPEDLEIFEGLVDALEDDDDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QKVY 232
>gi|108804157|ref|YP_644094.1| hypothetical protein Rxyl_1318 [Rubrobacter xylanophilus DSM 9941]
gi|118573928|sp|Q1AWE6.1|Y1318_RUBXD RecName: Full=Probable transcriptional regulatory protein Rxyl_1318
gi|108765400|gb|ABG04282.1| protein of unknown function DUF28 [Rubrobacter xylanophilus DSM
9941]
Length = 250
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 134/243 (55%), Gaps = 15/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
S I +KGA DAK+ L++++ + + A ++GG +P +N LA ++KAK+ ++P D ++
Sbjct: 8 STIKRKKGAMDAKRGALFAKLSRAITVAAREGGGDPEANPALALAVQKAKDANMPNDNIQ 67
Query: 141 RNIKRASEKGQEA--FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMAD 198
R I R + G EA + YE Y GGV+++VEVLTD R+ + +R + GGK+
Sbjct: 68 RAIDRGTGAGSEAGDYEHITYEGYAPGGVAVMVEVLTDNRNRAASDIRYIFSKHGGKLGT 127
Query: 199 PGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
GSV + F R VV + +++L++ AL+AGAEDV E D D +++V
Sbjct: 128 SGSVAYLFERKGVVLVPADAVGEEELMEAALEAGAEDV------ELDGD------HWRVT 175
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+ + + L EAGI +E+ S + P+ T+++D LI L E DDV V
Sbjct: 176 TEPSEFMAVRQGLEEAGIRYESAQLS-MEPMNTVKLDASTARQTLRLIDALEENDDVQEV 234
Query: 319 YTD 321
Y +
Sbjct: 235 YAN 237
>gi|78357368|ref|YP_388817.1| hypothetical protein [Desulfovibrio alaskensis G20]
gi|119391301|sp|Q30YX4.1|Y2325_DESDG RecName: Full=Probable transcriptional regulatory protein Dde_2325
gi|78219773|gb|ABB39122.1| protein of unknown function DUF28 [Desulfovibrio alaskensis G20]
Length = 248
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 88/243 (36%), Positives = 136/243 (55%), Gaps = 21/243 (8%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDAKK+K ++++ KE+I A K GG +P +N+ L A + AK +++PKD +E
Sbjct: 10 IQHRKGRQDAKKSKAFTKVAKEIIIAAKGGG-DPVANSRLRAAIAAAKAVNLPKDKIETA 68
Query: 143 IKRASEK--GQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
IK+ + + G + F E VYE YG GG++ ++EV TD R+VA VR ++ GG M + G
Sbjct: 69 IKKGTGELAGGDIF-ELVYEGYGPGGIAFLIEVATDNKNRTVAEVRHILTKSGGSMGEAG 127
Query: 201 SVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
V + F + V+ +DQL++I L+AG +DVI +E D+ + V
Sbjct: 128 CVGWMFDKKGVLTFPKEAYSEDQLMEIGLEAGCDDVI----DEGDS--------WAVHVD 175
Query: 261 SDNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
++ D+ +AG+ E+ EL +P TIEVD E + L+ L E DDV V
Sbjct: 176 PSSFEDVKAAFEQAGVTAES---VELASVPQNTIEVDAETGKKLLRLVDALEENDDVQNV 232
Query: 319 YTD 321
+ +
Sbjct: 233 FAN 235
>gi|221308520|ref|ZP_03590367.1| hypothetical protein Bsubs1_03858 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221312845|ref|ZP_03594650.1| hypothetical protein BsubsN3_03814 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221317769|ref|ZP_03599063.1| hypothetical protein BsubsJ_03768 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221322045|ref|ZP_03603339.1| hypothetical protein BsubsS_03859 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|255767180|ref|NP_388566.3| hypothetical protein BSU06840 [Bacillus subtilis subsp. subtilis
str. 168]
gi|402774913|ref|YP_006628857.1| protein YeeI [Bacillus subtilis QB928]
gi|449093400|ref|YP_007425891.1| response regulator aspartate phosphatase [Bacillus subtilis XF-1]
gi|452912363|ref|ZP_21960991.1| DNA-binding regulatory , YebC/PmpR family protein [Bacillus
subtilis MB73/2]
gi|254763394|sp|O31509.3|YEEI_BACSU RecName: Full=Probable transcriptional regulatory protein YeeI
gi|225184807|emb|CAB12504.3| conserved hypothetical protein [Bacillus subtilis subsp. subtilis
str. 168]
gi|402480098|gb|AFQ56607.1| YeeI [Bacillus subtilis QB928]
gi|407956367|dbj|BAM49607.1| hypothetical protein BEST7613_0676 [Bacillus subtilis BEST7613]
gi|407963638|dbj|BAM56877.1| hypothetical protein BEST7003_0676 [Bacillus subtilis BEST7003]
gi|449027315|gb|AGE62554.1| response regulator aspartate phosphatase [Bacillus subtilis XF-1]
gi|452117391|gb|EME07785.1| DNA-binding regulatory , YebC/PmpR family protein [Bacillus
subtilis MB73/2]
Length = 239
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 128/244 (52%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K ++DA +++Y++ G+E+ A K+G P+P SN L VLE+AK VP
Sbjct: 1 MGRKWNNIKEKKASKDANTSRIYAKFGREIYVAAKQGEPDPESNQALKVVLERAKTYSVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K+I+ER I++A +E + E YE +G G I+V+ LT+ + R+ VR GG
Sbjct: 61 KNIIERAIEKAKGGAEENYDELRYEGFGPNGSMIIVDALTNNVNRTAPEVRAAFGKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
M GSV + F V+ ++ AD+ + + D D++E EDD+
Sbjct: 121 MGVSGSVAYMFDATAVIGVEGKTADEALEILMEADVDVRDILE----EDDS--------A 168
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
V + D + + + AG+ T +L + + + D+A E ++LI L +L+DV
Sbjct: 169 IVYAEPDQFHAVQEAFKNAGVEEFTVAELTMLAQSEVTLPDDAKEQFEKLIDALEDLEDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QQVY 232
>gi|417629040|ref|ZP_12279280.1| hypothetical protein ECSTECMHI813_1956 [Escherichia coli
STEC_MHI813]
gi|345374254|gb|EGX06207.1| hypothetical protein ECSTECMHI813_1956 [Escherichia coli
STEC_MHI813]
Length = 246
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 128/235 (54%), Gaps = 15/235 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
RK AQDAK+ K+++++ +E+++A K GG +P +N L A ++KA ++ +D + R I R
Sbjct: 13 RKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAIDKALSNNMTRDTLNRAIAR 72
Query: 146 ASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMF 204
+A +E + YE YG GG +I++E L+D R+VA VR CGG + GSV +
Sbjct: 73 GVGGDDDANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTDGSVAY 132
Query: 205 KFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNY 264
F + V I F D+D +++ AL+AGAEDV+ T +D A V + +
Sbjct: 133 LFSKKGV--ISFEKGDEDTIMEAALEAGAEDVV--------TYDDGA---IDVYTAWEEM 179
Query: 265 TDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ L EAG+ ++ S ++P T ++D E LI L + DDV VY
Sbjct: 180 GKVRDALEEAGLKADSAEVS-MIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVY 233
>gi|417707910|ref|ZP_12356947.1| hypothetical protein SFVA6_2728 [Shigella flexneri VA-6]
gi|420331691|ref|ZP_14833353.1| hypothetical protein SFK1770_2868 [Shigella flexneri K-1770]
gi|333002772|gb|EGK22331.1| hypothetical protein SFVA6_2728 [Shigella flexneri VA-6]
gi|391252125|gb|EIQ11327.1| hypothetical protein SFK1770_2868 [Shigella flexneri K-1770]
Length = 238
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 130/244 (53%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ +A K+G P+P NT L V+E+AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGATSKIYAKFGVEIYAAAKQGEPDPELNTSLKFVIERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A G E F++ YE +G G I+ E LT + R++A VR + GG
Sbjct: 61 KHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMIIAETLTSNVNRTIANVRTIFNKKGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV + F V+ K TD D + +I LDA DV D T+E+ Y
Sbjct: 121 IGAAGSVSYMFDNTGVIVFKGTDP--DHIFEILLDAEV-DV------RDVTEEEGNIVIY 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+D + I L+ AGI + E++ + +E+ E +E+ + L+ L + DDV
Sbjct: 172 --TEPADLHKGIAA-LKAAGITEFSTTELEMIAQSEVELSPEDLEIFEGLVDALEDDDDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QKVY 232
>gi|436836952|ref|YP_007322168.1| protein of unknown function DUF28 [Fibrella aestuarina BUZ 2]
gi|384068365|emb|CCH01575.1| protein of unknown function DUF28 [Fibrella aestuarina BUZ 2]
Length = 237
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 124/246 (50%), Gaps = 15/246 (6%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR RK + + AK ++R+GK+++ AVK GGP+P +N L AV++ AK ++P
Sbjct: 1 MGRAFEYRKARKMKRWGQMAKTFTRIGKDIVIAVKAGGPDPDTNGRLRAVIQNAKAANMP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K+ VER IK+AS K QE + E VYE Y GV IV+E TD + R+VA +R GG
Sbjct: 61 KENVERAIKKASSKEQEDYKEIVYEGYAPHGVGIVIETATDNLNRTVANIRSYFNKLGGS 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ G + F F R V I D D+L +D GA D+ + D
Sbjct: 121 LGTQGMLDFMFTRKSVFRITAEGVDMDELELELIDFGA----------DELEFDEEANQI 170
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELD 313
+ + + L EAG + G+E +P E+ DE + ++LI ++ E D
Sbjct: 171 VIYGDFTAFGALQKHLEEAGYELK---GAEFERIPTDYKELTDEQVADVEKLIERIEEDD 227
Query: 314 DVDAVY 319
DV VY
Sbjct: 228 DVQMVY 233
>gi|379726935|ref|YP_005319120.1| hypothetical protein MPD5_0346 [Melissococcus plutonius DAT561]
gi|376317838|dbj|BAL61625.1| hypothetical protein MPD5_0346 [Melissococcus plutonius DAT561]
Length = 240
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 133/245 (54%), Gaps = 20/245 (8%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I GRK AQDAK+ K++ ++ +E+ A K GG +P N L ++K K ++P D ++
Sbjct: 8 NNIQGRKNAQDAKRGKIFQKLSREIYMAAKTGGIDPAMNPSLRLAVDKGKAANMPNDNID 67
Query: 141 RNIKRASEKGQ-EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+AS E + E YE YG GG +I+V LTD R+ VR GG + +
Sbjct: 68 RAIKKASSSTDGENYDEVTYEGYGPGGTAILVYALTDNRNRTATNVRVAFTRNGGSLGET 127
Query: 200 GSVMFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV + F R V+ + + D+D++L+ L+AGAED+ + +E +++
Sbjct: 128 GSVAYMFDRKGYIVITREALEIDEDEMLEAVLEAGAEDM------------EVSEEVFEI 175
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDV 315
++ +++ + L AG +EL +P TT+ +D+E + ++L+ +L + DDV
Sbjct: 176 YTSPEDFVSVRDALEMAGYQLAQ---AELTIVPQTTVTLDEEQLGKLQKLVDRLEDDDDV 232
Query: 316 DAVYT 320
V+T
Sbjct: 233 TQVFT 237
>gi|310779486|ref|YP_003967819.1| hypothetical protein [Ilyobacter polytropus DSM 2926]
gi|309748809|gb|ADO83471.1| protein of unknown function DUF28 [Ilyobacter polytropus DSM 2926]
Length = 250
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 141/248 (56%), Gaps = 21/248 (8%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ S I RKGAQD K+AKL++++GKE+ + K+GG + N L LEKA+ ++PKD
Sbjct: 6 KWSNIKHRKGAQDKKRAKLFTKLGKELTISAKEGGGDINFNPRLRLALEKARSGNMPKDN 65
Query: 139 VERNIKRASEK--GQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKM 196
++R IK+ + + G E ++E YE YG G + +V+V+TD RS ++VR GG +
Sbjct: 66 IDRAIKKGTGELEGVE-YVEIRYEGYGPSGTAFIVDVVTDNKNRSASSVRSTFSKRGGNL 124
Query: 197 ADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
G+V + F + ++ I D+++L+ AL+AGAEDV ED+T ++
Sbjct: 125 GSDGAVAWMFNKNGLIEIPAEGIDEEELMMTALEAGAEDV----KLEDET--------FE 172
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKE---LIAKLLELD 313
V++ ++ + L EAG +E + ++P +E+ DE + K+ L L ++D
Sbjct: 173 VITDPADFQTVLDSLVEAGYKYEEAEVT-MIPENKVEITDE--DTAKKVFGLFEALEDID 229
Query: 314 DVDAVYTD 321
DVD VY++
Sbjct: 230 DVDDVYSN 237
>gi|395800727|ref|ZP_10479999.1| hypothetical protein FF52_02655 [Flavobacterium sp. F52]
gi|395437135|gb|EJG03057.1| hypothetical protein FF52_02655 [Flavobacterium sp. F52]
Length = 237
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 126/244 (51%), Gaps = 13/244 (5%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR GRK + + AK ++R+GK+++ AVK+GGPNP SN+ L AV++ AK ++P
Sbjct: 1 MGRAFEFRKGRKMKRWSAMAKTFTRIGKDIVMAVKEGGPNPDSNSRLRAVIQNAKAANMP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
KD VER IK AS K + E ++E Y G++I++E +D R+VA +R C G
Sbjct: 61 KDNVERAIKNASNKDTANYKEILFEGYAPHGIAILIETASDNNNRTVANIRSYFNKCNGT 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
M GSV F F I D ++L +D GAE+V E DED Y
Sbjct: 121 MGTQGSVEFMFDHTCNFRIAKDGIDAEELELELIDFGAEEVFE--------DEDGILIYA 172
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
S + + +L G+ +G E +P T E+ + + ++LI K+ E DDV
Sbjct: 173 PFGS----FGALQKELENRGLEI-LSSGFERIPQITKELTEAQIADVEKLIEKIEEDDDV 227
Query: 316 DAVY 319
VY
Sbjct: 228 MNVY 231
>gi|332799124|ref|YP_004460623.1| hypothetical protein TepRe1_1170 [Tepidanaerobacter acetatoxydans
Re1]
gi|332696859|gb|AEE91316.1| UPF0082 protein yeeN [Tepidanaerobacter acetatoxydans Re1]
Length = 245
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 136/243 (55%), Gaps = 15/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
S I +K DA+K K+Y+R K +I A ++GGP+P +N+ L ++EKAK+ ++P D +E
Sbjct: 8 SNIKNKKAKMDAQKGKIYTRFSKLIIVAAREGGPDPNTNSRLKDIIEKAKQANMPNDNIE 67
Query: 141 RNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IKR S E G + E +YE YG GGV+I+++ TD R+ +R + GG + +
Sbjct: 68 RAIKRGSGELGGADYEEIMYEGYGPGGVAILIDATTDNRNRTAGEMRHLFDKHGGNLGET 127
Query: 200 GSVMFKFRRARVVNI-KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
G V + F + ++ I K D D +Q++ +A+D+GAEDV E ED E +
Sbjct: 128 GCVAWMFEKKGLILIEKKDDTDVEQIMMLAIDSGAEDVEEL--------EDSIE----IT 175
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
++ + + + L++ I + S +P TT+ + + E ++L+ L E DDV V
Sbjct: 176 TSVEKFETVKNYLQDNNIDIFSAELS-FIPNTTVTLHESESEKLEKLLEILEEHDDVQNV 234
Query: 319 YTD 321
YT+
Sbjct: 235 YTN 237
>gi|226954206|ref|ZP_03824670.1| conserved hypothetical protein [Acinetobacter sp. ATCC 27244]
gi|226835075|gb|EEH67458.1| conserved hypothetical protein [Acinetobacter sp. ATCC 27244]
Length = 279
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 149/276 (53%), Gaps = 29/276 (10%)
Query: 54 PLYEVKHCNFQVRTIRTFAPVCMGRRS--SKIAGRKGAQDAKKAKLYSRMGKEVISAVKK 111
P Y H F+ F M S + I RK QDA + K++++ +E+++A +
Sbjct: 12 PCYANIHALFE---FYFFGVTSMAGHSKWANIKHRKAKQDASRGKVFTKYIREIVTAARL 68
Query: 112 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA--FIEKVYEVYGYGGVSI 169
GGP+ SN L AV+EKA +++ +D + R I+R + G+E E YE YG GGV++
Sbjct: 69 GGPDAASNPRLRAVVEKALSVNMTRDTINRAIQRGA-GGEENDDLKEVTYEGYGVGGVAV 127
Query: 170 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDAD-KDQLLDIA 228
+VE +TD + R+V VR G + GSV + F + I F D +D+++++A
Sbjct: 128 IVETMTDNLNRTVPDVRHCFSKTNGNLGTNGSVAYLFTKRG--EISFEDVSLEDKIMEVA 185
Query: 229 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL- 287
L+AGA+D+ + DED V+++ +++ ++ L AG+ ++DN ++
Sbjct: 186 LEAGADDI--------EVDEDS----ILVITSPESFGEVQDALAAAGL--KSDNAEVVMS 231
Query: 288 PITTIEVD--DEAMELNKELIAKLLELDDVDAVYTD 321
P T E+ D+A ++ K +I L +LDDV VYT+
Sbjct: 232 PSTKAEITDVDQAKQIMK-MIDMLEDLDDVQNVYTN 266
>gi|405383322|ref|ZP_11037091.1| DNA-binding regulatory protein, YebC/PmpR family [Rhizobium sp.
CF142]
gi|397320285|gb|EJJ24724.1| DNA-binding regulatory protein, YebC/PmpR family [Rhizobium sp.
CF142]
Length = 248
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 126/239 (52%), Gaps = 13/239 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QD+ ++K++S++ +E+ A K G P+PT N L ++ AK +PKD ++R
Sbjct: 10 IMHRKGRQDSVRSKMFSKLAREITVAAKAGLPDPTMNARLRLAIQNAKAQSMPKDNIDRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+AS E + E YE YG GG +I+VE LTD R+ + VR + GG + + GSV
Sbjct: 70 IKKASGADTENYDEVRYEGYGPGGTAIIVEALTDNRNRTASNVRSIFTKAGGALGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F + K + D D++++ A++AGA+DV +TDE E +Y ++T+
Sbjct: 130 SFSFDHVGEITYKLSAGDADKVMEAAIEAGADDV--------ETDE---EGHY--ITTAF 176
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
K EA + + + VD+E + LI L + DDV VY++
Sbjct: 177 EALGEVAKALEASLGEAETVKAVWRAQNNVPVDEERAQSLLRLIDSLEDDDDVQNVYSN 235
>gi|326798500|ref|YP_004316319.1| hypothetical protein [Sphingobacterium sp. 21]
gi|326549264|gb|ADZ77649.1| UPF0082 protein yeeN [Sphingobacterium sp. 21]
Length = 241
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 90/250 (36%), Positives = 136/250 (54%), Gaps = 11/250 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR RK + AK A ++R+GKE+ AVK+ GP+P SN+ L ++ AK +++P
Sbjct: 1 MGRAFEFRKERKFKRWAKMAVQFTRLGKEIAIAVKESGPHPESNSRLRTAIQNAKAVNMP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
KD +E IKRASEK + + E VYE YG GV I++E TD R+VA +R GG
Sbjct: 61 KDRIEAAIKRASEKDAKGYEEHVYEGYGPHGVPILIETATDNTNRTVANIRSYFTKAGGS 120
Query: 196 MADPGSVMFKFRRARVVNIKFT-DADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERY 254
+ GS+ F F+R + T D + ++L +D G E++ V D+ D
Sbjct: 121 LGKTGSLDFIFQRKSIFRFAATEDLNLEELELELIDGGLEELY---VEADEEGNDIV--- 174
Query: 255 YKVVSTS-DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELD 313
VV TS +++ ++ L E GI ++ E + ++T EV +EA +LI K+ E D
Sbjct: 175 --VVQTSFEDFGNMQKLLEEKGIDVKSAK-LERINLSTTEVSEEASAEVMKLIDKIEEDD 231
Query: 314 DVDAVYTDQI 323
DV AVY + +
Sbjct: 232 DVQAVYHNMV 241
>gi|415841057|ref|ZP_11522279.1| hypothetical protein ECRN5871_4068 [Escherichia coli RN587/1]
gi|417280384|ref|ZP_12067684.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
3003]
gi|417287303|ref|ZP_12074590.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
TW07793]
gi|425278262|ref|ZP_18669514.1| hypothetical protein ECARS42123_2364 [Escherichia coli ARS4.2123]
gi|425300672|ref|ZP_18690611.1| hypothetical protein EC07798_2526 [Escherichia coli 07798]
gi|432802119|ref|ZP_20036100.1| hypothetical protein A1W3_02379 [Escherichia coli KTE84]
gi|323187722|gb|EFZ73023.1| hypothetical protein ECRN5871_4068 [Escherichia coli RN587/1]
gi|386244713|gb|EII86443.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
3003]
gi|386249636|gb|EII95807.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
TW07793]
gi|408202455|gb|EKI27564.1| hypothetical protein ECARS42123_2364 [Escherichia coli ARS4.2123]
gi|408216242|gb|EKI40574.1| hypothetical protein EC07798_2526 [Escherichia coli 07798]
gi|431349096|gb|ELG35938.1| hypothetical protein A1W3_02379 [Escherichia coli KTE84]
Length = 238
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 130/244 (53%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ +A K+G P+P NT L V+E+AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGATSKIYAKFGVEIYAAAKQGEPDPELNTSLKFVIERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A G E F++ YE +G G I+ E LT + R++A VR + GG
Sbjct: 61 KHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMIIAETLTSNVNRTIANVRTIFNKKGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV + F V+ K TD D + +I L+A DV D T+E+ Y
Sbjct: 121 IGAAGSVSYMFDNTGVIVFKGTDP--DHIFEILLEAEV-DV------RDVTEEEGNIVIY 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+D + I L+ AGI + E++ T +E+ E +E+ + L+ L + DDV
Sbjct: 172 --TEPTDLHKGIAA-LKAAGITEFSTTELEMIAQTEVELSPEDLEIFEGLVDALEDDDDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QKVY 232
>gi|56963721|ref|YP_175452.1| hypothetical protein ABC1956 [Bacillus clausii KSM-K16]
gi|60390871|sp|Q5WGL4.1|Y1956_BACSK RecName: Full=Probable transcriptional regulatory protein ABC1956
gi|56909964|dbj|BAD64491.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
Length = 238
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 131/246 (53%), Gaps = 16/246 (6%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K ++DA +++Y++ G+E+ A ++G P+P N L AVLE+AK +VP
Sbjct: 1 MGRKWNNIKEKKASKDANTSRIYAKFGREIYVAARQGEPDPELNQALKAVLERAKTYNVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K I++R I++A E++ E+ YE +G G ++V+ LT+ + R+ + VR GG
Sbjct: 61 KSIIDRAIEKAKGGSDESYEERRYEGFGPNGAMVIVDALTNNVNRTASDVRAAFGKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDA--GAEDVIEPPVNEDDTDEDRAER 253
M GSV + F R V I F D+ L+I +DA A+D+IE EDDT
Sbjct: 121 MGVSGSVAYMFDRVAV--IGFEGKTADEALEILMDADVDAKDIIE----EDDT------- 167
Query: 254 YYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELD 313
V + D + + R AGI + ++ + + ++ +++I + +L+
Sbjct: 168 -VIVYAEPDQFHAVQEAFRNAGIEEFSVAEFSMIAHNEVTLSEDVQAQFEKMIDAIEDLE 226
Query: 314 DVDAVY 319
DV VY
Sbjct: 227 DVQQVY 232
>gi|381195912|ref|ZP_09903254.1| hypothetical protein AlwoW_01470 [Acinetobacter lwoffii WJ10621]
Length = 249
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 87/246 (35%), Positives = 138/246 (56%), Gaps = 22/246 (8%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK QDA + KL+++ +E+ +A K GG + SN L AV+EKA +++ +D++
Sbjct: 8 ANIKHRKAKQDASRGKLFTKFIRELTTAAKLGGGDAASNPRLRAVVEKALSVNMTRDVIN 67
Query: 141 RNIKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I+R A + + E YE YG GGV+++VE +TD + R+V VR G +
Sbjct: 68 RAIQRGAGGEDNDDLKEITYEGYGVGGVAVIVETMTDNLNRTVPDVRHCFSKTDGNLGTN 127
Query: 200 GSVMFKFRRARVVNIKFTDAD-KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
GSV F F + I F D +D+++D+AL+AGAED IE NE V+
Sbjct: 128 GSVAFLFTKRG--EITFEDVSLEDKIMDVALEAGAED-IEVDENE-----------ILVI 173
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELL-PITTIEVD--DEAMELNKELIAKLLELDDV 315
+T +++ D+ L AG+ ++DN ++ P T E+ D+A ++ K +I L +LDDV
Sbjct: 174 TTPESFGDVQDALTAAGL--KSDNAEVVMSPSTKAEITDIDQAKKIMK-MIDMLEDLDDV 230
Query: 316 DAVYTD 321
VYT+
Sbjct: 231 QNVYTN 236
>gi|381152653|ref|ZP_09864522.1| DNA-binding regulatory protein, YebC/PmpR family [Methylomicrobium
album BG8]
gi|380884625|gb|EIC30502.1| DNA-binding regulatory protein, YebC/PmpR family [Methylomicrobium
album BG8]
Length = 249
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 134/243 (55%), Gaps = 16/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK QDAK+ K+++++ +E+ AVK GGP+ SN L ++KA ++ +D ++
Sbjct: 8 ANIRHRKAGQDAKRGKIFTKLLREITVAVKSGGPDAGSNPTLRTAIDKALGSNMRRDTID 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
IK+AS + E+V YE YG GG +++VE LTD R+V+ VR GG +
Sbjct: 68 NAIKKASGAQEGVNYEEVRYEGYGPGGTAVMVECLTDNRNRTVSDVRHAFTKAGGNLGTD 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F + +++ DAD+D L++ AL+AGA DV+ N+D + V++
Sbjct: 128 GSVAYLFTKTGMLSYA-EDADEDALMEAALEAGANDVV---TNDDGS--------IDVMT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITT-IEVDDEAMELNKELIAKLLELDDVDAV 318
+ ++Y + L AG F DN + +T E+ E E LI +L +LDDV V
Sbjct: 176 SPEDYLAVKETLIAAG--FTPDNAEVTMQASTQTELGPEDAEKMLRLIDRLEDLDDVQNV 233
Query: 319 YTD 321
Y++
Sbjct: 234 YSN 236
>gi|307944534|ref|ZP_07659874.1| conserved hypothetical protein [Roseibium sp. TrichSKD4]
gi|307772283|gb|EFO31504.1| conserved hypothetical protein [Roseibium sp. TrichSKD4]
Length = 248
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 125/240 (52%), Gaps = 15/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++S++ KE+ A K G P+P SN L ++ AK +PKD ++R
Sbjct: 10 IMHRKGRQDAVRSKMFSKLSKEITVAAKMGDPDPDSNPRLRLAVQNAKAQSMPKDNIQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
I ++ E + E YE YG GV+IVVE LTD RS + +R CGG + + GSV
Sbjct: 70 INKSQSGDAENYEEIRYEGYGPAGVAIVVEALTDNRNRSASNIRSYFTKCGGSLGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R + K + D +L+ A++AGAEDV+ DD+ + V + +
Sbjct: 130 SFMFDRVGEITYKPEAGEADAVLEAAIEAGAEDVL-----SDDSG-------HTVYTAFE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELL-PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ ++ L EA E D+ + P VD + + +LI L E DDV V+++
Sbjct: 178 DLNEVGKALEEA--LGEADSTKIIWKPQNLTPVDGDKAQTLMKLIDMLEEDDDVQNVFSN 235
>gi|259416989|ref|ZP_05740909.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
gi|259348428|gb|EEW60205.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
Length = 246
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 129/247 (52%), Gaps = 25/247 (10%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKG QDA ++KL+S++ KE+ A K G P+P N L +++AK VPKD+++
Sbjct: 8 ANIQHRKGRQDAARSKLFSKLSKEITVAAKMGDPDPEKNPRLRLAVKEAKSNSVPKDVID 67
Query: 141 RNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
R IK+A+ E + E YE YG GV+++VE +TD R+ + VR GG + + G
Sbjct: 68 RAIKKATGGDAENYDEIRYEGYGPNGVAVIVETMTDNKNRTASTVRSTFSKNGGNLGETG 127
Query: 201 SVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
SV F F R V D D ++ A++AGAEDV ++ ED V+
Sbjct: 128 SVGFMFERKGEVTYPAEVGDADTVMMAAIEAGAEDV--------ESSEDG-----HVIFC 174
Query: 261 SDNYTDITTKLREAGIPFETDNG----SELL--PITTIEVDDEAMELNKELIAKLLELDD 314
+D T L E E + G ++L+ P TT E+D E M+ +L+ L + DD
Sbjct: 175 AD------TDLNEVSNALEGELGESESTKLIWKPTTTTELDLEGMQKLMKLVDALEDDDD 228
Query: 315 VDAVYTD 321
V V T+
Sbjct: 229 VQRVTTN 235
>gi|322515239|ref|ZP_08068237.1| YebC like protein [Actinobacillus ureae ATCC 25976]
gi|322118744|gb|EFX90950.1| YebC like protein [Actinobacillus ureae ATCC 25976]
Length = 246
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 139/241 (57%), Gaps = 17/241 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDA++ K+++++ +E+++A K GG + ++N L + ++KA ++ +D +
Sbjct: 8 ANIKHRKAAQDAQRGKIFTKLIRELVTAAKLGGGDVSANPRLRSAVDKALSNNMTRDTIN 67
Query: 141 RNIKRASEKGQEAFIE-KVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I+R G + +E K+YE YG GG +++VE L+D R+++ VR CGG +
Sbjct: 68 RAIERGVGGGDDTNMETKIYEGYGPGGTAVMVECLSDNANRTISQVRPSFTKCGGNLGTE 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F + ++ I D+D L + A++AGA+D I+P ED + +++ +
Sbjct: 128 GSVGYLFSKKGLILI--ASGDEDALTEAAIEAGADD-IQP--QEDGS--------FEIYT 174
Query: 260 TSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
++ D+ + +AG F+ +N ++P TT+E+D E +LI +L + DDV V
Sbjct: 175 AWEDLGDVRDGIEKAG--FKIENAEVTMIPSTTVELDAETAPKLLDLINRLEDCDDVQNV 232
Query: 319 Y 319
Y
Sbjct: 233 Y 233
>gi|313667975|ref|YP_004048259.1| hypothetical protein NLA_6360 [Neisseria lactamica 020-06]
gi|313005437|emb|CBN86872.1| conserved hypothetical protein [Neisseria lactamica 020-06]
Length = 242
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 136/252 (53%), Gaps = 30/252 (11%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +K QDAK+ K+++R+ KE+ A + GG +P +N L LEKA E ++PKD V+
Sbjct: 8 ANIQHKKARQDAKRGKIFTRLIKEITVAARMGGGDPGANPRLRLALEKAAENNMPKDNVQ 67
Query: 141 RNIKRASE--KGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMAD 198
R I + + +G E +IE YE YG GG +++V+ LTD TR+VA VR GG +
Sbjct: 68 RAIDKGTGNLEGVE-YIELRYEGYGIGGAALMVDCLTDNKTRTVADVRHAFTKNGGNLGT 126
Query: 199 PGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
G V F F + + D+D L++ AL+AGAEDV+ N+D + E V+
Sbjct: 127 DGCVAFNFVHQGYLVFE-PGVDEDALMEAALEAGAEDVV---ANDDGSIE--------VI 174
Query: 259 STSDNYTDITTKLREAG-------IPFETDNGSELLPITTIEVDDEAMELNKELIAKLLE 311
+ +++ + + L AG + T N +EL D+A+++ K LI L +
Sbjct: 175 TAPNDWAGVKSALEAAGYKSVDGDVTMRTQNETEL-------SGDDAVKMQK-LIDALED 226
Query: 312 LDDVDAVYTDQI 323
LDDV VYT +
Sbjct: 227 LDDVQDVYTSAV 238
>gi|169832437|ref|YP_001695280.1| hypothetical protein SPH_2064 [Streptococcus pneumoniae
Hungary19A-6]
gi|419494033|ref|ZP_14033757.1| DNA-binding regulatory family protein, YebC/PmpR [Streptococcus
pneumoniae GA47210]
gi|421290476|ref|ZP_15741225.1| hypothetical protein SPAR157_1851 [Streptococcus pneumoniae
GA54354]
gi|421305867|ref|ZP_15756520.1| hypothetical protein SPAR169_1957 [Streptococcus pneumoniae
GA62331]
gi|226701148|sp|B1I8C4.1|Y2064_STRPI RecName: Full=Probable transcriptional regulatory protein SPH_2064
gi|168994939|gb|ACA35551.1| conserved hypothetical protein [Streptococcus pneumoniae
Hungary19A-6]
gi|379592012|gb|EHZ56830.1| DNA-binding regulatory family protein, YebC/PmpR [Streptococcus
pneumoniae GA47210]
gi|395886205|gb|EJG97222.1| hypothetical protein SPAR157_1851 [Streptococcus pneumoniae
GA54354]
gi|395904296|gb|EJH15213.1| hypothetical protein SPAR169_1957 [Streptococcus pneumoniae
GA62331]
Length = 238
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 126/246 (51%), Gaps = 12/246 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ A KKG P+P SN+ L V+++AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGANSKVYAKFGVEIYVAAKKGDPDPESNSALKFVIDRAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K I+++ I +A E F E YE +G G ++V+ LT + R+ A VR GG
Sbjct: 61 KHIIDKAIDKAKGNTDETFTEGRYEGFGPNGSMLIVDTLTSNVNRTAANVRAAFGKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
M GSV + F V+ DA DA E ++E V+ DD + E
Sbjct: 121 MGASGSVSYLFDNKGVIVFGGEDA----------DAVFEQLLEADVDVDDV--EAQEGTI 168
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
V + + LRE+GI E++P + +E+ EA+E ++L + L + +DV
Sbjct: 169 TVYTAPTDLHKAIVALRESGIEEFQVTELEMIPQSEVELSGEALETFEKLYSVLEDDEDV 228
Query: 316 DAVYTD 321
+YT+
Sbjct: 229 QKIYTN 234
>gi|323487122|ref|ZP_08092430.1| hypothetical protein HMPREF9474_04181 [Clostridium symbiosum
WAL-14163]
gi|323694629|ref|ZP_08108795.1| glucose-1-phosphate adenylyltransferase [Clostridium symbiosum
WAL-14673]
gi|355623211|ref|ZP_09047082.1| hypothetical protein HMPREF1020_01161 [Clostridium sp. 7_3_54FAA]
gi|323399623|gb|EGA92013.1| hypothetical protein HMPREF9474_04181 [Clostridium symbiosum
WAL-14163]
gi|323501397|gb|EGB17293.1| glucose-1-phosphate adenylyltransferase [Clostridium symbiosum
WAL-14673]
gi|354822539|gb|EHF06897.1| hypothetical protein HMPREF1020_01161 [Clostridium sp. 7_3_54FAA]
Length = 242
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 139/244 (56%), Gaps = 19/244 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +K D+ K K+++ +G+E+ AVK+GG +P +N+ L V+ KAK ++P D +E
Sbjct: 8 ANIKHKKEKNDSAKGKIFTVIGREIAVAVKEGGADPANNSRLRDVIAKAKANNMPNDTIE 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+A+ E + YE YG GV+I+V+ LTD R+ A VR GG + P
Sbjct: 68 RGIKKAAGDANSVNYENLTYEGYGPNGVAIIVDALTDNKNRTAANVRSAFTKGGGNVGTP 127
Query: 200 GSVMFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV F F + +++ + + D D+L+ ++LDAGAED E E+D+ Y+V
Sbjct: 128 GSVSFMFDKKGQIIIDKEECEMDADELMMLSLDAGAEDFAE----EEDS--------YEV 175
Query: 258 VSTSDNYTDITTKLREAGIP-FETDNGSELLPITTIEV-DDEAMELNKELIAKLLELDDV 315
++ ++++ + L + GIP E D ++P T +E+ DD+A++ ++ L + DDV
Sbjct: 176 ITAPEDFSAVREALEKEGIPMMEAD--VTMIPQTWVELTDDDAIKKMNRILDLLDDDDDV 233
Query: 316 DAVY 319
A Y
Sbjct: 234 QATY 237
>gi|293364279|ref|ZP_06611005.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
gi|307702755|ref|ZP_07639707.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
gi|291317125|gb|EFE57552.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
gi|307623871|gb|EFO02856.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
Length = 238
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 126/249 (50%), Gaps = 18/249 (7%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ A KKG P+P SNT L V+++AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGANSKVYAKFGVEIYVAAKKGDPDPESNTALKFVIDRAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A E F E YE +G G ++V+ LT + R+ A VR GG
Sbjct: 61 KHVIDKAIDKAKGNTDETFTEGRYEGFGPNGSMLIVDTLTSNVNRTAANVRAAFGKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
M GSV + F V I F D D + ++ L+A D D D E
Sbjct: 121 MGASGSVSYLFDNKGV--IVFAGEDADAIFELLLEA-------------DVDVDDVEAEE 165
Query: 256 KVVSTSDNYTDI---TTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLEL 312
++ TD+ LRE+GI E++P + +E+ E +E ++L + L +
Sbjct: 166 GTITVYTAPTDLHKAIVALRESGIEEFQVTELEMIPQSEVELSGEDLETFEKLYSVLEDD 225
Query: 313 DDVDAVYTD 321
+DV +YT+
Sbjct: 226 EDVQKIYTN 234
>gi|153853240|ref|ZP_01994649.1| hypothetical protein DORLON_00634 [Dorea longicatena DSM 13814]
gi|149754026|gb|EDM63957.1| DNA-binding regulatory protein, YebC/PmpR family [Dorea longicatena
DSM 13814]
Length = 243
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 126/220 (57%), Gaps = 17/220 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGP-NPTSNTVLAAVLEKAKELDVPKDIV 139
+ I +K DA K K+++++GKE+ AVK+GG +P++N+ L V+ KAK ++P D +
Sbjct: 8 ANIKHKKEKNDAAKGKIFTKIGKEIAVAVKEGGSSDPSNNSRLRDVIAKAKSNNMPNDTI 67
Query: 140 ERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMAD 198
ERNIKRAS A E + YE YG G +I+VE LTD R+ + V+ G +
Sbjct: 68 ERNIKRASGDMSAANYEHITYEGYGPNGTAIIVETLTDNKNRTASNVKNAFTKGSGNVGT 127
Query: 199 PGSVMFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
PG V F F + V++ + + D D+L+ LDAGAED +E E+D+ ++
Sbjct: 128 PGCVSFMFDKKGQIVIDKEEYEGDADELMMQVLDAGAEDFVE----EEDS--------FE 175
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDD 296
V++ D+++ + + EAGIP + + ++P T +E+ D
Sbjct: 176 VLTDPDDFSAVRLAMEEAGIPMVSAEVT-MIPQTYVELTD 214
>gi|395788841|ref|ZP_10468380.1| UPF0082 protein [Bartonella taylorii 8TBB]
gi|395431706|gb|EJF97718.1| UPF0082 protein [Bartonella taylorii 8TBB]
Length = 248
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 122/239 (51%), Gaps = 13/239 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++S++ +E+ A K+G P+P N L ++ AK +PKD +ER
Sbjct: 10 IMHRKGRQDAMRSKIFSKLAREITVAAKQGAPDPAMNPRLRLAVQNAKAQSMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+AS E + E YE YG GGV+++VE LTD R+ + VR GG + + GSV
Sbjct: 70 IKKASGGDVEHYDEVRYEGYGPGGVAVIVEALTDNRNRTASNVRAAFTKSGGALGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R + K D ++D A++AGAEDV E + + +
Sbjct: 130 SFMFNRIGEIVYKPEAGTADNIMDAAIEAGAEDV------------QSEETGHHITCAFE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ ++ +K+ EA + + IT VD+E LI+ L E DDV VY +
Sbjct: 178 DIGEV-SKMLEAKLGEAESIKTVWKAITLAPVDEEKALSVLRLISTLEEDDDVQNVYAN 235
>gi|320093782|ref|ZP_08025629.1| YebC like protein [Actinomyces sp. oral taxon 178 str. F0338]
gi|319979283|gb|EFW10779.1| YebC like protein [Actinomyces sp. oral taxon 178 str. F0338]
Length = 253
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 86/240 (35%), Positives = 134/240 (55%), Gaps = 18/240 (7%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++R+ K + A + GG +P N L ++KAK+ VP D ++R +KR
Sbjct: 13 KKAAIDAKRGKLFARLIKNIEVAARTGGGDPAGNPTLYDAIQKAKKNSVPSDNIDRAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S E G + +YE YG GV+ +VE LTD R+ + VR GG +ADPGSV
Sbjct: 73 GSGAEGGGANYETIMYEGYGPSGVAFLVECLTDNRNRAASDVRLGFTRHGGSLADPGSVS 132
Query: 204 FKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
+ F R VV + D D+D +++ ++AGAE+V ED D + V +
Sbjct: 133 YLFSRRGVVEVPPADGIDEDAIMEAVIEAGAEEV------EDTGDG------FVVETEPQ 180
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDE-AMELNKELIAKLLELDDVDAVYTD 321
+ + T L+EAGI +++ + + T +E+D E A+++NK LI L + DDV +YT+
Sbjct: 181 DVVAVRTALQEAGIDYDSAE-VQFVASTEVELDLEGALKVNK-LIDALEDSDDVQNIYTN 238
>gi|302380328|ref|ZP_07268798.1| DNA-binding regulatory protein, YebC/PmpR family [Finegoldia magna
ACS-171-V-Col3]
gi|303233712|ref|ZP_07320366.1| DNA-binding regulatory protein, YebC/PmpR family [Finegoldia magna
BVS033A4]
gi|302311818|gb|EFK93829.1| DNA-binding regulatory protein, YebC/PmpR family [Finegoldia magna
ACS-171-V-Col3]
gi|302495146|gb|EFL54898.1| DNA-binding regulatory protein, YebC/PmpR family [Finegoldia magna
BVS033A4]
Length = 241
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 138/243 (56%), Gaps = 21/243 (8%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
SKI +KG++DA++ K++++M + + AV++GG +P N L +V+EKA+ ++P D ++
Sbjct: 8 SKIKNKKGSEDARRGKIFTKMARAITVAVREGGADPEYNPSLKSVIEKARAENMPNDNID 67
Query: 141 RNIKRASEKGQEAFIEK-VYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+AS G A E VYE YG GV+++VE LTD R+ + VR GG +
Sbjct: 68 RAIKKASGDGDSANYENIVYEGYGPEGVAVIVECLTDNRNRTASDVRHYFDKFGGNLGQN 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV F F+R ++ I D+++++ +LDAGAED A+ V++
Sbjct: 128 GSVSFMFQRKGLLLIDADSLDEEEVMMDSLDAGAEDF-------------EADDGIFVIN 174
Query: 260 TS-DNYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEA-MELNKELIAKLLELDDV 315
T+ +++ + L E G F S+L+ P ++++DE+ ++ ++LI L + DDV
Sbjct: 175 TAMEDFAQVRDTLLEKGYKFVK---SDLVYEPSNYVKINDESNVDKMEKLIDNLEDSDDV 231
Query: 316 DAV 318
V
Sbjct: 232 QQV 234
>gi|255020122|ref|ZP_05292192.1| hypothetical protein ACA_1331 [Acidithiobacillus caldus ATCC 51756]
gi|340783535|ref|YP_004750142.1| hypothetical protein Atc_2794 [Acidithiobacillus caldus SM-1]
gi|254970415|gb|EET27907.1| hypothetical protein ACA_1331 [Acidithiobacillus caldus ATCC 51756]
gi|340557686|gb|AEK59440.1| conserved hypothetical protein [Acidithiobacillus caldus SM-1]
Length = 250
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 136/243 (55%), Gaps = 17/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAKK K+++R+ +E+ A + GG + +SN L L+KA ++ KD VE
Sbjct: 8 ANIKFRKAAQDAKKGKIFTRLIREITVAARAGGGDASSNPRLRTALDKAYANNMAKDTVE 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IKR + + + E+V YE YG GV+I++E +TD R+VA +R + GG +
Sbjct: 68 RAIKRGTGELEGVDYEEVTYEGYGPSGVAILIETMTDNRVRTVAEIRHIFSKRGGNLGTS 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F+R ++++ D +D++L+ AL+AGAEDV+ T++ R Y + +
Sbjct: 128 GSVAYLFQRRGMISLA-ADVGEDRVLEAALEAGAEDVV--------TEDGRIVVYTEATA 178
Query: 260 TSDNYTDITTKLREAGI-PFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+ L+ AG+ P E + ++P TT+EV + + L+ L E DDV V
Sbjct: 179 LH----GVAEALQNAGLTPEEIE--LTMIPETTVEVSGDDADKLMRLLEALEENDDVQNV 232
Query: 319 YTD 321
Y +
Sbjct: 233 YAN 235
>gi|154685178|ref|YP_001420339.1| hypothetical protein RBAM_007230 [Bacillus amyloliquefaciens FZB42]
gi|375361380|ref|YP_005129419.1| hypothetical protein BACAU_0690 [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|384264273|ref|YP_005419980.1| hypothetical protein BANAU_0642 [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|385263811|ref|ZP_10041898.1| hypothetical protein MY7_0546 [Bacillus sp. 5B6]
gi|387897200|ref|YP_006327496.1| glucose-1-phosphate adenylyltransferase [Bacillus amyloliquefaciens
Y2]
gi|394992888|ref|ZP_10385657.1| hypothetical protein BB65665_10565 [Bacillus sp. 916]
gi|421732613|ref|ZP_16171731.1| hypothetical protein WYY_16087 [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|429504199|ref|YP_007185383.1| hypothetical protein B938_03415 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|451347971|ref|YP_007446602.1| hypothetical protein KSO_016170 [Bacillus amyloliquefaciens IT-45]
gi|452854683|ref|YP_007496366.1| Putative UPF0082 protein yeeI [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
gi|166228845|sp|A7Z282.1|Y723_BACA2 RecName: Full=Probable transcriptional regulatory protein
RBAM_007230
gi|154351029|gb|ABS73108.1| YeeI [Bacillus amyloliquefaciens FZB42]
gi|371567374|emb|CCF04224.1| UPF0082 protein [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
gi|380497626|emb|CCG48664.1| UPF0082 protein [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|385148307|gb|EIF12244.1| hypothetical protein MY7_0546 [Bacillus sp. 5B6]
gi|387171310|gb|AFJ60771.1| glucose-1-phosphate adenylyltransferase [Bacillus amyloliquefaciens
Y2]
gi|393806329|gb|EJD67679.1| hypothetical protein BB65665_10565 [Bacillus sp. 916]
gi|407073421|gb|EKE46416.1| hypothetical protein WYY_16087 [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|429485789|gb|AFZ89713.1| hypothetical protein B938_03415 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|449851729|gb|AGF28721.1| hypothetical protein KSO_016170 [Bacillus amyloliquefaciens IT-45]
gi|452078943|emb|CCP20696.1| Putative UPF0082 protein yeeI [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
Length = 239
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K ++DA +++Y++ G+E+ A K+G P+P SN L VLE+AK VP
Sbjct: 1 MGRKWNNIKEKKASKDANTSRIYAKFGREIYVAAKQGEPDPESNQALKVVLERAKTYSVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K+I+ER I++A +E F E YE +G G I+V+ LT+ + R+ VR GG
Sbjct: 61 KNIIERAIEKAKGGAEENFDELRYEGFGPNGSMIIVDALTNNVNRTAPEVRAAFGKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
M GSV + F V+ ++ AD+ L + D D++E EDD+
Sbjct: 121 MGVSGSVAYMFDATAVIGVEGKTADEALELLMEADVDVRDILE----EDDS--------V 168
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
V + D + + + AG+ T +L +E+ ++A ++LI L +L+DV
Sbjct: 169 IVYAEPDQFHAVQEAFKNAGVEEFTVAELTMLAQNEVELPEDAKAQFEKLIDVLEDLEDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QQVY 232
>gi|237816093|ref|ZP_04595089.1| conserved hypothetical protein [Brucella abortus str. 2308 A]
gi|297248987|ref|ZP_06932695.1| conserved hypothetical protein [Brucella abortus bv. 5 str. B3196]
gi|384445737|ref|YP_005604456.1| hypothetical protein [Brucella melitensis NI]
gi|237788756|gb|EEP62968.1| conserved hypothetical protein [Brucella abortus str. 2308 A]
gi|297174120|gb|EFH33477.1| conserved hypothetical protein [Brucella abortus bv. 5 str. B3196]
gi|349743726|gb|AEQ09269.1| conserved hypothetical protein [Brucella melitensis NI]
Length = 265
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 80/250 (32%), Positives = 129/250 (51%), Gaps = 13/250 (5%)
Query: 72 APVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKE 131
P+ + I RKG QDA ++K++S++ +E+ A K+G P+P N L ++ AK
Sbjct: 16 GPMAGHSQFKNIMHRKGRQDAVRSKMFSKLAREITVAAKQGLPDPAMNPRLRLAIQNAKA 75
Query: 132 LDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKD 191
+PKD +ER IK+A+ E + E YE G GGVS++VE LTD R+ + VR
Sbjct: 76 QSMPKDNIERAIKKAAGNDGENYDEVRYEGRGPGGVSVIVEALTDNRNRTASNVRAAFTK 135
Query: 192 CGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRA 251
GG + + GSV F F R + K D D++++ A++AGAEDV
Sbjct: 136 SGGSLGETGSVSFMFDRVGEIVYKPEAGDADKVMEAAIEAGAEDV------------QSG 183
Query: 252 ERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLE 311
E + ++ ++ +++ L EA + + P T E+D+E +L++ L +
Sbjct: 184 EDGHVILCAFEDIGEVSKAL-EAALGEAESIKTIWKPQTNTELDEEKARSVLKLLSVLED 242
Query: 312 LDDVDAVYTD 321
DDV VYT+
Sbjct: 243 DDDVQNVYTN 252
>gi|319899365|ref|YP_004159462.1| hypothetical protein BARCL_1220 [Bartonella clarridgeiae 73]
gi|319403333|emb|CBI76892.1| conserved protein of unknown function [Bartonella clarridgeiae 73]
Length = 248
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 122/239 (51%), Gaps = 13/239 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++S++ +E+ A K+G P+PT N L ++ AK +PKD +ER
Sbjct: 10 IMHRKGRQDAMRSKIFSKLAREITVAAKQGSPDPTMNPRLRLAVQNAKAQSMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+AS E + E YE YG GGV+++VE LTD R+ + VR GG + + GSV
Sbjct: 70 IKKASGGDVENYDEVRYEGYGPGGVAVIVEALTDNRNRTASNVRAAFTKSGGALGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R + K D ++D A++AGAEDV E + + +
Sbjct: 130 SFMFNRIGEIIYKSEAGTPDTIMDAAIEAGAEDV------------QSEEMGHHIFCAFE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ ++ +K+ E + + IT +D+E LIA L E DDV VY +
Sbjct: 178 DIGEV-SKILETTLGEAESIKTIWKAITLAPIDEEKALSVLRLIATLEEDDDVQNVYAN 235
>gi|289433685|ref|YP_003463557.1| hypothetical protein lse_0318 [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289169929|emb|CBH26469.1| conserved hypothetical protein [Listeria seeligeri serovar 1/2b
str. SLCC3954]
Length = 239
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 132/244 (54%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K ++D +++Y++ G E+ A K G P+P SN L V+E+AK +VP
Sbjct: 1 MGRKWANIKEKKASKDKTNSRIYAKFGIEIYVAAKSGDPDPHSNQKLRFVIERAKTYNVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K I++R I++A G E + E YE +G G I+V+ LT+ + R+ + VR GG
Sbjct: 61 KHIIDRAIEKAKGTGDETYSELRYEGFGPSGSMIIVDALTNNVNRTASDVRAAYSKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
M GSV + F + ++ DA D+LL++ ++A DV D +DED Y
Sbjct: 121 MGVSGSVAYMFDNTAIFGVEGKDA--DELLELLMEADI-DV------RDISDEDGQAIIY 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+ +++ + L+ AGI T E++P I++ E +E ++LI L +L+DV
Sbjct: 172 ---AEPEDFHAVQEGLKAAGIEEFTVAEIEMIPQNDIQLSGEDLEKFEKLIDALEDLEDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QKVY 232
>gi|282883309|ref|ZP_06291903.1| DNA-binding regulatory protein, YebC/PmpR family [Peptoniphilus
lacrimalis 315-B]
gi|300813878|ref|ZP_07094183.1| DNA-binding regulatory protein, YebC/PmpR family [Peptoniphilus sp.
oral taxon 836 str. F0141]
gi|281296813|gb|EFA89315.1| DNA-binding regulatory protein, YebC/PmpR family [Peptoniphilus
lacrimalis 315-B]
gi|300512065|gb|EFK39260.1| DNA-binding regulatory protein, YebC/PmpR family [Peptoniphilus sp.
oral taxon 836 str. F0141]
Length = 243
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 132/246 (53%), Gaps = 16/246 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +KG +DA+K K+++++ + + A ++GG NP N L ++KAK ++P D
Sbjct: 6 KWNNIKNKKGKEDARKGKVFTKLARLITVATRQGGANPDFNPQLKVAIDKAKAENLPNDN 65
Query: 139 VERNIKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ER IK+ A E F YE YG G++++V+ LTD R+ +R + GG +
Sbjct: 66 IERAIKKGAGEDDSSNFETITYEGYGPSGIAVMVKCLTDNRNRTAPDIRHIFDKNGGNLG 125
Query: 198 DPGSVMFKFRRARVVNI-KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
PG V F F+ ++ I K D D D+ + ALD GAEDV+ DR + +
Sbjct: 126 TPGCVSFMFQEKGIIGILKSDDMDLDEFILSALDYGAEDVV-----------DRGDA-VE 173
Query: 257 VVSTSDNYTDITTKLREAGIPF-ETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+V+ ++Y D+ KL E G F E+D + + +D+ +++K LI L + DDV
Sbjct: 174 IVTVPESYHDVRKKLEEDGYEFVESDITFVAQNYSKLSDEDDIKKMDK-LIDALEDNDDV 232
Query: 316 DAVYTD 321
VYT+
Sbjct: 233 QDVYTN 238
>gi|395763770|ref|ZP_10444439.1| hypothetical protein JPAM2_18739 [Janthinobacterium lividum PAMC
25724]
Length = 241
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 86/249 (34%), Positives = 138/249 (55%), Gaps = 20/249 (8%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +K A DAK+ K+++R+ KE+ A + GG + +N L ++KA + ++PKD
Sbjct: 6 KWANIKHKKAATDAKRGKIWTRLIKEITVAARMGGADAITNPRLRLAVDKAADANMPKDN 65
Query: 139 VERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
V+R I R S A E+V YE YG GG +++VE +TD R+VA VR GG M
Sbjct: 66 VQRAINRGSGGVDGANYEEVRYEGYGVGGAAVIVECMTDNKVRTVAEVRNAFNKNGGNMG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
+ GSV F F+ + + D+D+L++ AL+AGA+DVI DE E ++V
Sbjct: 126 NEGSVAFMFQHCGQL-LFAPGTDEDKLMEAALEAGADDVI--------ADE---EGGFEV 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELL--PIT-TIEVDDEAMELNKELIAKLLELDD 314
++ ++ + L AG E +E++ P T T+ D+A+++ K LI L LDD
Sbjct: 174 LTPVHDFATVKEALEAAGFKAEV---AEVIMKPATETVYAGDDAIKMQK-LIDALELLDD 229
Query: 315 VDAVYTDQI 323
V V+T+ +
Sbjct: 230 VQEVFTNAL 238
>gi|161617792|ref|YP_001591757.1| hypothetical protein SPAB_05656 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|161936194|ref|YP_153358.2| hypothetical protein SPA4319 [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|162139498|ref|YP_219342.2| hypothetical protein SC4355 [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|167551246|ref|ZP_02345001.1| conserved hypothetical protein TIGR01033 [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|168232844|ref|ZP_02657902.1| conserved hypothetical protein TIGR01033 [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|168262460|ref|ZP_02684433.1| conserved hypothetical protein TIGR01033 [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|168464604|ref|ZP_02698507.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|194443044|ref|YP_002043738.1| hypothetical protein SNSL254_A4850 [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194471054|ref|ZP_03077038.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|197247924|ref|YP_002149451.1| hypothetical protein SeAg_B4826 [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197261947|ref|ZP_03162021.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|200388491|ref|ZP_03215103.1| conserved hypothetical protein TIGR01033 [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|204926731|ref|ZP_03217933.1| conserved hypothetical protein TIGR01033 [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|224586323|ref|YP_002640122.1| hypothetical protein SPC_4633 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|238910663|ref|ZP_04654500.1| hypothetical protein SentesTe_05923 [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|416423630|ref|ZP_11691019.1| hypothetical protein SEEM315_10894 [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|416433310|ref|ZP_11696836.1| hypothetical protein SEEM971_11153 [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|416441997|ref|ZP_11702084.1| hypothetical protein SEEM973_17122 [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|416447012|ref|ZP_11705524.1| hypothetical protein SEEM974_12961 [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|416455201|ref|ZP_11710826.1| hypothetical protein SEEM201_04333 [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|416457970|ref|ZP_11712572.1| hypothetical protein SEEM202_04584 [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|416465274|ref|ZP_11716746.1| hypothetical protein SEEM954_04198 [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|416482025|ref|ZP_11723551.1| hypothetical protein SEEM054_20870 [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|416487153|ref|ZP_11725463.1| hypothetical protein SEEM675_13032 [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|416495974|ref|ZP_11728881.1| hypothetical protein SEEM965_17500 [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|416526054|ref|ZP_11742108.1| hypothetical protein SEEM010_13711 [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|416534649|ref|ZP_11747137.1| hypothetical protein SEEM030_00320 [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|416543582|ref|ZP_11752364.1| hypothetical protein SEEM19N_09074 [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|416555217|ref|ZP_11758702.1| hypothetical protein SEEM29N_17150 [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
gi|416580510|ref|ZP_11771901.1| hypothetical protein SEEM801_15401 [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|416587872|ref|ZP_11776408.1| hypothetical protein SEEM507_03914 [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|416592282|ref|ZP_11779103.1| hypothetical protein SEEM877_16264 [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|416600242|ref|ZP_11784189.1| hypothetical protein SEEM867_15478 [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|416607716|ref|ZP_11788787.1| hypothetical protein SEEM180_13243 [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|416615483|ref|ZP_11793395.1| hypothetical protein SEEM600_16877 [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|416621191|ref|ZP_11796210.1| hypothetical protein SEEM581_16345 [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|416633717|ref|ZP_11802105.1| hypothetical protein SEEM501_11956 [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|416644052|ref|ZP_11806435.1| hypothetical protein SEEM460_20856 [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|416646251|ref|ZP_11807517.1| hypothetical protein SEEM020_005127 [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|416655869|ref|ZP_11812845.1| hypothetical protein SEEM6152_11798 [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|416669290|ref|ZP_11819256.1| hypothetical protein SEEM0077_07013 [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|416683584|ref|ZP_11824424.1| hypothetical protein SEEM0047_20158 [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|416689016|ref|ZP_11825273.1| hypothetical protein SEEM0055_18641 [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|416708379|ref|ZP_11833241.1| hypothetical protein SEEM0052_04400 [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|416710203|ref|ZP_11834308.1| hypothetical protein SEEM3312_19591 [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|416717656|ref|ZP_11839908.1| hypothetical protein SEEM5258_01700 [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|416726328|ref|ZP_11846389.1| hypothetical protein SEEM1156_13492 [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|416731230|ref|ZP_11849145.1| hypothetical protein SEEM9199_14254 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|416740815|ref|ZP_11854688.1| hypothetical protein SEEM8282_17767 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|416744813|ref|ZP_11856771.1| hypothetical protein SEEM8283_07426 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|416752688|ref|ZP_11860500.1| hypothetical protein SEEM8284_08184 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|416763703|ref|ZP_11867377.1| hypothetical protein SEEM8285_06280 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|416770212|ref|ZP_11871564.1| hypothetical protein SEEM8287_18461 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|417327977|ref|ZP_12113245.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Adelaide str. A4-669]
gi|417345861|ref|ZP_12125878.1| putative Integrase [Salmonella enterica subsp. enterica serovar
Baildon str. R6-199]
gi|417354687|ref|ZP_12131050.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Gaminara str. A4-567]
gi|417362405|ref|ZP_12136064.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Give str. S5-487]
gi|417387655|ref|ZP_12152026.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
gi|417393057|ref|ZP_12155682.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Minnesota str. A4-603]
gi|417441878|ref|ZP_12162248.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Mississippi str. A4-633]
gi|417471761|ref|ZP_12167664.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Montevideo str. S5-403]
gi|417535882|ref|ZP_12189217.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Urbana str. R8-2977]
gi|418483511|ref|ZP_13052518.1| hypothetical protein SEEM906_00750 [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|418488579|ref|ZP_13056184.1| hypothetical protein SEEM5278_04456 [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035278]
gi|418496665|ref|ZP_13063099.1| hypothetical protein SEEM5318_19516 [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|418500767|ref|ZP_13067158.1| hypothetical protein SEEM5320_06073 [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|418503861|ref|ZP_13070220.1| hypothetical protein SEEM5321_13268 [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|418508520|ref|ZP_13074823.1| hypothetical protein SEEM5327_09870 [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
gi|418513019|ref|ZP_13079253.1| hypothetical protein SEEPO729_11265 [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
gi|418523956|ref|ZP_13089944.1| hypothetical protein SEEM8286_07777 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
gi|418762345|ref|ZP_13318474.1| hypothetical protein SEEN185_12497 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35185]
gi|418767488|ref|ZP_13323552.1| hypothetical protein SEEN199_15368 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35199]
gi|418770656|ref|ZP_13326677.1| hypothetical protein SEEN539_21612 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21539]
gi|418775122|ref|ZP_13331082.1| hypothetical protein SEEN953_14128 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|418778748|ref|ZP_13334656.1| hypothetical protein SEEN188_10264 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35188]
gi|418785198|ref|ZP_13341031.1| hypothetical protein SEEN559_15318 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21559]
gi|418787409|ref|ZP_13343210.1| hypothetical protein SEEN447_19286 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
gi|418792951|ref|ZP_13348687.1| hypothetical protein SEEN449_10894 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|418796320|ref|ZP_13352012.1| hypothetical protein SEEN567_09586 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
gi|418802912|ref|ZP_13358537.1| hypothetical protein SEEN202_11861 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
gi|418808109|ref|ZP_13363666.1| hypothetical protein SEEN550_14138 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21550]
gi|418811842|ref|ZP_13367367.1| hypothetical protein SEEN513_18681 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22513]
gi|418816612|ref|ZP_13372104.1| hypothetical protein SEEN538_13508 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21538]
gi|418822201|ref|ZP_13377614.1| hypothetical protein SEEN425_05375 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22425]
gi|418832979|ref|ZP_13387912.1| hypothetical protein SEEN486_16579 [Salmonella enterica subsp.
enterica serovar Newport str. CVM N18486]
gi|418834094|ref|ZP_13389005.1| hypothetical protein SEEN543_08570 [Salmonella enterica subsp.
enterica serovar Newport str. CVM N1543]
gi|418841458|ref|ZP_13396277.1| hypothetical protein SEEN554_03186 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21554]
gi|418848706|ref|ZP_13403444.1| hypothetical protein SEEN978_15180 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 37978]
gi|418852917|ref|ZP_13407613.1| hypothetical protein SEEN593_06777 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19593]
gi|418859210|ref|ZP_13413815.1| hypothetical protein SEEN470_04662 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
gi|418864332|ref|ZP_13418862.1| hypothetical protein SEEN536_10162 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|418869133|ref|ZP_13423573.1| hypothetical protein SEEN176_00020 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
gi|419789977|ref|ZP_14315653.1| hypothetical protein SEENLE01_13935 [Salmonella enterica subsp.
enterica serovar Newport str. Levine 1]
gi|419794868|ref|ZP_14320476.1| hypothetical protein SEENLE15_06684 [Salmonella enterica subsp.
enterica serovar Newport str. Levine 15]
gi|421356809|ref|ZP_15807124.1| hypothetical protein SEEE3139_02127 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|421364136|ref|ZP_15814373.1| hypothetical protein SEEE0166_16041 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|421365810|ref|ZP_15816021.1| hypothetical protein SEEE0631_01437 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|421371759|ref|ZP_15821916.1| hypothetical protein SEEE0424_08677 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|421375096|ref|ZP_15825212.1| hypothetical protein SEEE3076_02627 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|421379132|ref|ZP_15829206.1| hypothetical protein SEEE4917_00040 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|421384380|ref|ZP_15834407.1| hypothetical protein SEEE6622_03758 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|421391351|ref|ZP_15841318.1| hypothetical protein SEEE6670_16125 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|421394077|ref|ZP_15844020.1| hypothetical protein SEEE6426_07124 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|421397544|ref|ZP_15847459.1| hypothetical protein SEEE6437_02340 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|421401604|ref|ZP_15851475.1| hypothetical protein SEEE7246_00035 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|421406624|ref|ZP_15856437.1| hypothetical protein SEEE7250_02559 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|421413930|ref|ZP_15863679.1| hypothetical protein SEEE1427_16625 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|421415190|ref|ZP_15864922.1| hypothetical protein SEEE2659_00300 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|421420350|ref|ZP_15870028.1| hypothetical protein SEEE1757_03491 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|421424601|ref|ZP_15874241.1| hypothetical protein SEEE5101_02218 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|421429121|ref|ZP_15878720.1| hypothetical protein SEEE8B1_02252 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|421436392|ref|ZP_15885923.1| hypothetical protein SEEE5518_15621 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|421438277|ref|ZP_15887775.1| hypothetical protein SEEE1618_02258 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|421442738|ref|ZP_15892186.1| hypothetical protein SEEE3079_01783 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|421886370|ref|ZP_16317544.1| hypothetical protein SS209_03514 [Salmonella enterica subsp.
enterica serovar Senftenberg str. SS209]
gi|422006386|ref|ZP_16353412.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Senftenberg str. A4-543]
gi|436623951|ref|ZP_20514926.1| hypothetical protein SEE22704_16324 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|436726078|ref|ZP_20519087.1| hypothetical protein SEE30663_13296 [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
gi|436798475|ref|ZP_20523434.1| hypothetical protein SEECHS44_09108 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|436805781|ref|ZP_20526301.1| hypothetical protein SEEE1882_00665 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|436817440|ref|ZP_20534502.1| hypothetical protein SEEE1884_19392 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|436846354|ref|ZP_20539285.1| hypothetical protein SEEE1594_20786 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|436851933|ref|ZP_20542429.1| hypothetical protein SEEE1566_13782 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|436858691|ref|ZP_20547096.1| hypothetical protein SEEE1580_14789 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|436863971|ref|ZP_20550190.1| hypothetical protein SEEE1543_07774 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|436869129|ref|ZP_20553501.1| hypothetical protein SEEE1441_01981 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|436876115|ref|ZP_20557661.1| hypothetical protein SEEE1810_00379 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|436884528|ref|ZP_20562172.1| hypothetical protein SEEE1558_00358 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|436892678|ref|ZP_20566805.1| hypothetical protein SEEE1018_00862 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|436900089|ref|ZP_20571169.1| hypothetical protein SEEE1010_00342 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|436910383|ref|ZP_20576910.1| hypothetical protein SEEE1729_06782 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|436916584|ref|ZP_20580431.1| hypothetical protein SEEE0895_01757 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|436926326|ref|ZP_20586280.1| hypothetical protein SEEE0899_08423 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|436935078|ref|ZP_20590628.1| hypothetical protein SEEE1457_07630 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|436939439|ref|ZP_20593745.1| hypothetical protein SEEE1747_00764 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|436952068|ref|ZP_20601098.1| hypothetical protein SEEE0968_15213 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|436956827|ref|ZP_20602740.1| hypothetical protein SEEE1444_00550 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|436972753|ref|ZP_20610339.1| hypothetical protein SEEE1445_16240 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|436986949|ref|ZP_20615649.1| hypothetical protein SEEE1559_20552 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|436995176|ref|ZP_20619190.1| hypothetical protein SEEE1565_15582 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|437002619|ref|ZP_20621237.1| hypothetical protein SEEE1808_03230 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|437015540|ref|ZP_20625826.1| hypothetical protein SEEE1811_03614 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|437034584|ref|ZP_20633098.1| hypothetical protein SEEE0956_17578 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|437040383|ref|ZP_20634632.1| hypothetical protein SEEE1455_02387 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|437049839|ref|ZP_20640241.1| hypothetical protein SEEE1575_08167 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|437057791|ref|ZP_20644713.1| hypothetical protein SEEE1725_08218 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|437063357|ref|ZP_20648032.1| hypothetical protein SEEE1745_02146 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|437072303|ref|ZP_20652475.1| hypothetical protein SEEE1791_01795 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|437084497|ref|ZP_20659662.1| hypothetical protein SEEE1795_15573 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|437093837|ref|ZP_20664075.1| hypothetical protein SEEE6709_15283 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|437100761|ref|ZP_20666141.1| hypothetical protein SEEE9058_02758 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|437123232|ref|ZP_20672842.1| hypothetical protein SEEE0816_14041 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|437126783|ref|ZP_20674620.1| hypothetical protein SEEE0819_00035 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|437136156|ref|ZP_20679706.1| hypothetical protein SEEE3072_02973 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|437148390|ref|ZP_20687467.1| hypothetical protein SEEE3089_19507 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|437149826|ref|ZP_20688379.1| hypothetical protein SEEE9163_01145 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|437160518|ref|ZP_20694678.1| hypothetical protein SEEE151_10281 [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|437172561|ref|ZP_20701173.1| hypothetical protein SEEEN202_20582 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|437176445|ref|ZP_20703451.1| hypothetical protein SEEE3991_09373 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|437180846|ref|ZP_20706191.1| hypothetical protein SEEE3618_00580 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|437252318|ref|ZP_20715409.1| hypothetical protein SEEE1831_25130 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13183-1]
gi|437262547|ref|ZP_20718936.1| hypothetical protein SEEE2490_16235 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|437268567|ref|ZP_20722019.1| hypothetical protein SEEEL909_09213 [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|437280403|ref|ZP_20727833.1| hypothetical protein SEEEL913_15822 [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|437284599|ref|ZP_20729734.1| hypothetical protein SEEE4941_02752 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_69-4941]
gi|437312590|ref|ZP_20736536.1| hypothetical protein SEEE7015_14667 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|437323182|ref|ZP_20739146.1| hypothetical protein SEEE7927_04839 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|437345356|ref|ZP_20746499.1| hypothetical protein SEEECHS4_19444 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|437410018|ref|ZP_20752581.1| hypothetical protein SEEE2217_04627 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|437447701|ref|ZP_20758967.1| hypothetical protein SEEE4018_14280 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 40-18]
gi|437465314|ref|ZP_20763880.1| hypothetical protein SEEE6211_16171 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|437475453|ref|ZP_20766626.1| hypothetical protein SEEE4441_07176 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|437493076|ref|ZP_20771850.1| hypothetical protein SEEE4647_11020 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|437508450|ref|ZP_20776249.1| hypothetical protein SEEE9845_10821 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|437523118|ref|ZP_20779237.1| hypothetical protein SEEE9317_02928 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|437559222|ref|ZP_20785638.1| hypothetical protein SEEE0116_12529 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|437569840|ref|ZP_20788087.1| hypothetical protein SEEE1117_01734 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|437584501|ref|ZP_20792729.1| hypothetical protein SEEE1392_02520 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|437610606|ref|ZP_20800917.1| hypothetical protein SEEE0268_21525 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|437618546|ref|ZP_20803159.1| hypothetical protein SEEE0316_09810 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|437637601|ref|ZP_20807362.1| hypothetical protein SEEE0436_08299 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|437659817|ref|ZP_20812309.1| hypothetical protein SEEE1319_09856 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|437671305|ref|ZP_20815891.1| hypothetical protein SEEE4481_05040 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 8-1]
gi|437691334|ref|ZP_20820677.1| hypothetical protein SEEE6297_06082 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|437713735|ref|ZP_20827533.1| hypothetical protein SEEE4220_18274 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|437732894|ref|ZP_20831898.1| hypothetical protein SEEE1616_17259 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 16-16]
gi|437760536|ref|ZP_20834659.1| hypothetical protein SEEE2651_08153 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|437807095|ref|ZP_20839679.1| hypothetical protein SEEE3944_09139 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
gi|437826215|ref|ZP_20843905.1| hypothetical protein SEEERB17_008031 [Salmonella enterica subsp.
enterica serovar Enteritidis str. SARB17]
gi|437917596|ref|ZP_20850595.1| hypothetical protein SEEE5621_18501 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 6.0562-1]
gi|437996978|ref|ZP_20853995.1| hypothetical protein SEEE5646_08792 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-5646]
gi|438085256|ref|ZP_20858718.1| hypothetical protein SEEE2625_05839 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|438103499|ref|ZP_20865414.1| hypothetical protein SEEE1976_16912 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|438113601|ref|ZP_20869689.1| hypothetical protein SEEE3407_15860 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|440765776|ref|ZP_20944789.1| hypothetical protein F434_22502 [Salmonella enterica subsp.
enterica serovar Agona str. SH11G1113]
gi|440769884|ref|ZP_20948839.1| hypothetical protein F514_19576 [Salmonella enterica subsp.
enterica serovar Agona str. SH08SF124]
gi|440772030|ref|ZP_20950939.1| hypothetical protein F515_06572 [Salmonella enterica subsp.
enterica serovar Agona str. SH10GFN094]
gi|445175537|ref|ZP_21397392.1| hypothetical protein SEE8A_013099 [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|445216950|ref|ZP_21402176.1| hypothetical protein SE20037_21573 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
gi|445227679|ref|ZP_21404375.1| hypothetical protein SEE10_009882 [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|445252648|ref|ZP_21409022.1| hypothetical protein SEE436_001987 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 436]
gi|445333858|ref|ZP_21414990.1| hypothetical protein SEE18569_009535 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 18569]
gi|445346701|ref|ZP_21418908.1| hypothetical protein SEE13_016423 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|445361188|ref|ZP_21423726.1| hypothetical protein SEE23_014830 [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
gi|452121785|ref|YP_007472033.1| hypothetical protein CFSAN001992_11465 [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
gi|118577830|sp|Q57GA1.2|YEEN_SALCH RecName: Full=Probable transcriptional regulatory protein YeeN
gi|118577831|sp|Q5PIE3.2|YEEN_SALPA RecName: Full=Probable transcriptional regulatory protein YeeN
gi|161367156|gb|ABX70924.1| hypothetical protein SPAB_05656 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194401707|gb|ACF61929.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194457418|gb|EDX46257.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|195632658|gb|EDX51112.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|197211627|gb|ACH49024.1| conserved hypothetical protein TIGR01033 [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|197240202|gb|EDY22822.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|199605589|gb|EDZ04134.1| conserved hypothetical protein TIGR01033 [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|204323396|gb|EDZ08591.1| conserved hypothetical protein TIGR01033 [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|205323850|gb|EDZ11689.1| conserved hypothetical protein TIGR01033 [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|205332970|gb|EDZ19734.1| conserved hypothetical protein TIGR01033 [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|205348702|gb|EDZ35333.1| conserved hypothetical protein TIGR01033 [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|224470851|gb|ACN48681.1| hypothetical protein SPC_4633 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|322615669|gb|EFY12589.1| hypothetical protein SEEM315_10894 [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322618729|gb|EFY15618.1| hypothetical protein SEEM971_11153 [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322621857|gb|EFY18707.1| hypothetical protein SEEM973_17122 [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322627582|gb|EFY24373.1| hypothetical protein SEEM974_12961 [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322630888|gb|EFY27652.1| hypothetical protein SEEM201_04333 [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322637893|gb|EFY34594.1| hypothetical protein SEEM202_04584 [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322642255|gb|EFY38862.1| hypothetical protein SEEM954_04198 [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322643873|gb|EFY40421.1| hypothetical protein SEEM054_20870 [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322651049|gb|EFY47434.1| hypothetical protein SEEM675_13032 [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322656696|gb|EFY52984.1| hypothetical protein SEEM965_17500 [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322659879|gb|EFY56122.1| hypothetical protein SEEM19N_09074 [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322661911|gb|EFY58127.1| hypothetical protein SEEM801_15401 [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322666342|gb|EFY62520.1| hypothetical protein SEEM507_03914 [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322672761|gb|EFY68872.1| hypothetical protein SEEM877_16264 [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322676191|gb|EFY72262.1| hypothetical protein SEEM867_15478 [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322680675|gb|EFY76713.1| hypothetical protein SEEM180_13243 [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322684431|gb|EFY80435.1| hypothetical protein SEEM600_16877 [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|323194232|gb|EFZ79429.1| hypothetical protein SEEM581_16345 [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323197377|gb|EFZ82517.1| hypothetical protein SEEM501_11956 [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323201505|gb|EFZ86569.1| hypothetical protein SEEM460_20856 [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323213031|gb|EFZ97833.1| hypothetical protein SEEM6152_11798 [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323215403|gb|EGA00147.1| hypothetical protein SEEM0077_07013 [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323219386|gb|EGA03871.1| hypothetical protein SEEM0047_20158 [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323227690|gb|EGA11844.1| hypothetical protein SEEM0055_18641 [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323228860|gb|EGA12989.1| hypothetical protein SEEM0052_04400 [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323236529|gb|EGA20605.1| hypothetical protein SEEM3312_19591 [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323239971|gb|EGA24018.1| hypothetical protein SEEM5258_01700 [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323241983|gb|EGA26012.1| hypothetical protein SEEM1156_13492 [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323247870|gb|EGA31807.1| hypothetical protein SEEM9199_14254 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323251491|gb|EGA35362.1| hypothetical protein SEEM8282_17767 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323258143|gb|EGA41820.1| hypothetical protein SEEM8283_07426 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323263714|gb|EGA47235.1| hypothetical protein SEEM8284_08184 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323265692|gb|EGA49188.1| hypothetical protein SEEM8285_06280 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323270137|gb|EGA53585.1| hypothetical protein SEEM8287_18461 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|353561015|gb|EHC28075.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Gaminara str. A4-567]
gi|353569150|gb|EHC33818.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Adelaide str. A4-669]
gi|353581551|gb|EHC42454.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Give str. S5-487]
gi|353599716|gb|EHC55817.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
gi|353609918|gb|EHC63067.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Minnesota str. A4-603]
gi|353611433|gb|EHC64089.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Mississippi str. A4-633]
gi|353622035|gb|EHC71705.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Montevideo str. S5-403]
gi|353630624|gb|EHC78125.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Senftenberg str. A4-543]
gi|353655667|gb|EHC96613.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Urbana str. R8-2977]
gi|357952419|gb|EHJ79359.1| putative Integrase [Salmonella enterica subsp. enterica serovar
Baildon str. R6-199]
gi|363558119|gb|EHL42312.1| hypothetical protein SEEM010_13711 [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|363560034|gb|EHL44181.1| hypothetical protein SEEM29N_17150 [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
gi|363566755|gb|EHL50768.1| hypothetical protein SEEM030_00320 [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|366057095|gb|EHN21400.1| hypothetical protein SEEM5318_19516 [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|366061004|gb|EHN25257.1| hypothetical protein SEEM906_00750 [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|366067299|gb|EHN31449.1| hypothetical protein SEEM5320_06073 [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|366069749|gb|EHN33871.1| hypothetical protein SEEM5278_04456 [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035278]
gi|366072189|gb|EHN36281.1| hypothetical protein SEEM5321_13268 [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|366079775|gb|EHN43757.1| hypothetical protein SEEM5327_09870 [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
gi|366082584|gb|EHN46516.1| hypothetical protein SEEPO729_11265 [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
gi|366830941|gb|EHN57807.1| hypothetical protein SEEM020_005127 [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|372208268|gb|EHP21764.1| hypothetical protein SEEM8286_07777 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
gi|379983766|emb|CCF89817.1| hypothetical protein SS209_03514 [Salmonella enterica subsp.
enterica serovar Senftenberg str. SS209]
gi|392614135|gb|EIW96586.1| hypothetical protein SEENLE15_06684 [Salmonella enterica subsp.
enterica serovar Newport str. Levine 15]
gi|392614401|gb|EIW96848.1| hypothetical protein SEENLE01_13935 [Salmonella enterica subsp.
enterica serovar Newport str. Levine 1]
gi|392734780|gb|EIZ91961.1| hypothetical protein SEEN199_15368 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35199]
gi|392736381|gb|EIZ93544.1| hypothetical protein SEEN185_12497 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35185]
gi|392737250|gb|EIZ94411.1| hypothetical protein SEEN539_21612 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21539]
gi|392748920|gb|EJA05899.1| hypothetical protein SEEN953_14128 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|392752295|gb|EJA09236.1| hypothetical protein SEEN559_15318 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21559]
gi|392754955|gb|EJA11870.1| hypothetical protein SEEN188_10264 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35188]
gi|392765666|gb|EJA22450.1| hypothetical protein SEEN447_19286 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
gi|392765981|gb|EJA22764.1| hypothetical protein SEEN449_10894 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|392771189|gb|EJA27910.1| hypothetical protein SEEN567_09586 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
gi|392776309|gb|EJA32997.1| hypothetical protein SEEN202_11861 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
gi|392777937|gb|EJA34619.1| hypothetical protein SEEN513_18681 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22513]
gi|392778410|gb|EJA35090.1| hypothetical protein SEEN550_14138 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21550]
gi|392787876|gb|EJA44414.1| hypothetical protein SEEN425_05375 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22425]
gi|392789973|gb|EJA46475.1| hypothetical protein SEEN538_13508 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21538]
gi|392796448|gb|EJA52780.1| hypothetical protein SEEN486_16579 [Salmonella enterica subsp.
enterica serovar Newport str. CVM N18486]
gi|392806002|gb|EJA62117.1| hypothetical protein SEEN543_08570 [Salmonella enterica subsp.
enterica serovar Newport str. CVM N1543]
gi|392808787|gb|EJA64835.1| hypothetical protein SEEN554_03186 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21554]
gi|392823006|gb|EJA78810.1| hypothetical protein SEEN978_15180 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 37978]
gi|392828160|gb|EJA83857.1| hypothetical protein SEEN593_06777 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19593]
gi|392830378|gb|EJA86027.1| hypothetical protein SEEN470_04662 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
gi|392830858|gb|EJA86501.1| hypothetical protein SEEN536_10162 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|392836855|gb|EJA92431.1| hypothetical protein SEEN176_00020 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
gi|395984910|gb|EJH94085.1| hypothetical protein SEEE0166_16041 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|395992706|gb|EJI01817.1| hypothetical protein SEEE3139_02127 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|395993005|gb|EJI02115.1| hypothetical protein SEEE0631_01437 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|396002283|gb|EJI11275.1| hypothetical protein SEEE0424_08677 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|396006265|gb|EJI15235.1| hypothetical protein SEEE3076_02627 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|396007542|gb|EJI16489.1| hypothetical protein SEEE4917_00040 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|396011759|gb|EJI20665.1| hypothetical protein SEEE6670_16125 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|396016422|gb|EJI25290.1| hypothetical protein SEEE6426_07124 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|396020014|gb|EJI28864.1| hypothetical protein SEEE6622_03758 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|396033226|gb|EJI41937.1| hypothetical protein SEEE7250_02559 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|396033310|gb|EJI42018.1| hypothetical protein SEEE6437_02340 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|396034509|gb|EJI43199.1| hypothetical protein SEEE7246_00035 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|396037739|gb|EJI46384.1| hypothetical protein SEEE1427_16625 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|396045467|gb|EJI54060.1| hypothetical protein SEEE1757_03491 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|396048264|gb|EJI56820.1| hypothetical protein SEEE2659_00300 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|396053416|gb|EJI61911.1| hypothetical protein SEEE5518_15621 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|396059403|gb|EJI67857.1| hypothetical protein SEEE8B1_02252 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|396059558|gb|EJI68011.1| hypothetical protein SEEE5101_02218 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|396072873|gb|EJI81181.1| hypothetical protein SEEE3079_01783 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|396073447|gb|EJI81748.1| hypothetical protein SEEE1618_02258 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|434960549|gb|ELL53923.1| hypothetical protein SEECHS44_09108 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|434963357|gb|ELL56471.1| hypothetical protein SEE22704_16324 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|434969794|gb|ELL62468.1| hypothetical protein SEEE1882_00665 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|434971378|gb|ELL63894.1| hypothetical protein SEEE1884_19392 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|434978001|gb|ELL70079.1| hypothetical protein SEEE1594_20786 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|434982536|gb|ELL74352.1| hypothetical protein SEE30663_13296 [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
gi|434985980|gb|ELL77659.1| hypothetical protein SEEE1566_13782 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|434988661|gb|ELL80247.1| hypothetical protein SEEE1580_14789 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|434996968|gb|ELL88263.1| hypothetical protein SEEE1543_07774 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|435003161|gb|ELL94189.1| hypothetical protein SEEE1441_01981 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|435011163|gb|ELM01896.1| hypothetical protein SEEE1810_00379 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|435013371|gb|ELM04020.1| hypothetical protein SEEE1558_00358 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|435020377|gb|ELM10781.1| hypothetical protein SEEE1018_00862 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|435022416|gb|ELM12733.1| hypothetical protein SEEE1010_00342 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|435027763|gb|ELM17863.1| hypothetical protein SEEE1729_06782 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|435033073|gb|ELM22990.1| hypothetical protein SEEE0895_01757 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|435037502|gb|ELM27306.1| hypothetical protein SEEE0899_08423 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|435040113|gb|ELM29880.1| hypothetical protein SEEE1457_07630 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|435047706|gb|ELM37279.1| hypothetical protein SEEE1747_00764 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|435049837|gb|ELM39347.1| hypothetical protein SEEE0968_15213 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|435055291|gb|ELM44708.1| hypothetical protein SEEE1445_16240 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|435058035|gb|ELM47392.1| hypothetical protein SEEE1444_00550 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|435060910|gb|ELM50152.1| hypothetical protein SEEE1559_20552 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|435063258|gb|ELM52420.1| hypothetical protein SEEE1565_15582 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|435073629|gb|ELM62485.1| hypothetical protein SEEE1808_03230 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|435076086|gb|ELM64883.1| hypothetical protein SEEE0956_17578 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|435084218|gb|ELM72805.1| hypothetical protein SEEE1811_03614 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|435087361|gb|ELM75868.1| hypothetical protein SEEE1455_02387 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|435095473|gb|ELM83787.1| hypothetical protein SEEE1725_08218 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|435095623|gb|ELM83913.1| hypothetical protein SEEE1575_08167 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|435102339|gb|ELM90444.1| hypothetical protein SEEE1745_02146 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|435105931|gb|ELM93957.1| hypothetical protein SEEE1795_15573 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|435110490|gb|ELM98408.1| hypothetical protein SEEE1791_01795 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|435110752|gb|ELM98660.1| hypothetical protein SEEE6709_15283 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|435121522|gb|ELN09055.1| hypothetical protein SEEE0816_14041 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|435124536|gb|ELN11993.1| hypothetical protein SEEE9058_02758 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|435129869|gb|ELN17138.1| hypothetical protein SEEE0819_00035 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|435132107|gb|ELN19307.1| hypothetical protein SEEE3089_19507 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|435136892|gb|ELN23965.1| hypothetical protein SEEE3072_02973 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|435144926|gb|ELN31756.1| hypothetical protein SEEEN202_20582 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|435146909|gb|ELN33690.1| hypothetical protein SEEE151_10281 [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|435147371|gb|ELN34141.1| hypothetical protein SEEE9163_01145 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|435155756|gb|ELN42285.1| hypothetical protein SEEE3991_09373 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|435160605|gb|ELN46873.1| hypothetical protein SEEE1831_25130 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13183-1]
gi|435161727|gb|ELN47941.1| hypothetical protein SEEE2490_16235 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|435166995|gb|ELN52937.1| hypothetical protein SEEE3618_00580 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|435170550|gb|ELN56297.1| hypothetical protein SEEEL913_15822 [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|435173862|gb|ELN59329.1| hypothetical protein SEEEL909_09213 [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|435182604|gb|ELN67601.1| hypothetical protein SEEE7015_14667 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|435185327|gb|ELN70207.1| hypothetical protein SEEE4941_02752 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_69-4941]
gi|435190171|gb|ELN74765.1| hypothetical protein SEEECHS4_19444 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|435194914|gb|ELN79328.1| hypothetical protein SEEE7927_04839 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|435204526|gb|ELN88197.1| hypothetical protein SEEE2217_04627 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|435209312|gb|ELN92634.1| hypothetical protein SEEE4018_14280 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 40-18]
gi|435216744|gb|ELN99216.1| hypothetical protein SEEE6211_16171 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|435223319|gb|ELO05353.1| hypothetical protein SEEE4441_07176 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|435228213|gb|ELO09657.1| hypothetical protein SEEE4647_11020 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|435233199|gb|ELO14241.1| hypothetical protein SEEE9845_10821 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|435239643|gb|ELO20132.1| hypothetical protein SEEE0116_12529 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|435249704|gb|ELO29465.1| hypothetical protein SEEE9317_02928 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|435249767|gb|ELO29527.1| hypothetical protein SEEE1117_01734 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|435252036|gb|ELO31633.1| hypothetical protein SEEE0268_21525 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|435259165|gb|ELO38394.1| hypothetical protein SEEE0316_09810 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|435262682|gb|ELO41765.1| hypothetical protein SEEE1392_02520 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|435269573|gb|ELO48104.1| hypothetical protein SEEE1319_09856 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|435279260|gb|ELO57063.1| hypothetical protein SEEE0436_08299 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|435280260|gb|ELO57985.1| hypothetical protein SEEE4481_05040 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 8-1]
gi|435280705|gb|ELO58393.1| hypothetical protein SEEE6297_06082 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|435286407|gb|ELO63676.1| hypothetical protein SEEE4220_18274 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|435287542|gb|ELO64741.1| hypothetical protein SEEE1616_17259 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 16-16]
gi|435301042|gb|ELO77089.1| hypothetical protein SEEE3944_09139 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
gi|435305194|gb|ELO80730.1| hypothetical protein SEEERB17_008031 [Salmonella enterica subsp.
enterica serovar Enteritidis str. SARB17]
gi|435309432|gb|ELO84137.1| hypothetical protein SEEE2651_08153 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|435314634|gb|ELO88030.1| hypothetical protein SEEE5621_18501 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 6.0562-1]
gi|435319253|gb|ELO92107.1| hypothetical protein SEEE2625_05839 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|435323136|gb|ELO95305.1| hypothetical protein SEEE1976_16912 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|435329342|gb|ELP00766.1| hypothetical protein SEEE3407_15860 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|435336170|gb|ELP06183.1| hypothetical protein SEEE5646_08792 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-5646]
gi|436411503|gb|ELP09453.1| hypothetical protein F434_22502 [Salmonella enterica subsp.
enterica serovar Agona str. SH11G1113]
gi|436413281|gb|ELP11217.1| hypothetical protein F514_19576 [Salmonella enterica subsp.
enterica serovar Agona str. SH08SF124]
gi|436419943|gb|ELP17814.1| hypothetical protein F515_06572 [Salmonella enterica subsp.
enterica serovar Agona str. SH10GFN094]
gi|444857931|gb|ELX82926.1| hypothetical protein SE20037_21573 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
gi|444857950|gb|ELX82944.1| hypothetical protein SEE8A_013099 [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|444866773|gb|ELX91488.1| hypothetical protein SEE10_009882 [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|444875386|gb|ELX99588.1| hypothetical protein SEE18569_009535 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 18569]
gi|444877798|gb|ELY01934.1| hypothetical protein SEE13_016423 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|444884827|gb|ELY08642.1| hypothetical protein SEE23_014830 [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
gi|444889488|gb|ELY12921.1| hypothetical protein SEE436_001987 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 436]
gi|451910789|gb|AGF82595.1| hypothetical protein CFSAN001992_11465 [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
Length = 238
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 131/244 (53%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ +A K+G P+P SN+ L V+E+AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGATSKVYAKFGVEIYAAAKQGEPDPESNSALKFVIERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A G E F++ YE +G G ++ E LT + R++A +R + GG
Sbjct: 61 KHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMVIAETLTSNVNRTIANIRTIFNKKGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ G+V + F V+ K T D D + +I LDA DV D T+E+ Y
Sbjct: 121 IGAAGAVSYMFDNTGVIVFKGT--DPDHIFEILLDAEV-DV------RDVTEEEGNIVIY 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+D + I L+ AGI + E++ + +E+ E +E+ + L+ L + DDV
Sbjct: 172 --TEATDLHKGIAA-LKAAGITEFSTTELEMIAQSEVELSPEDLEIFEGLVDALEDDDDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QKVY 232
>gi|330991870|ref|ZP_08315819.1| UPF0082 protein [Gluconacetobacter sp. SXCC-1]
gi|329760891|gb|EGG77386.1| UPF0082 protein [Gluconacetobacter sp. SXCC-1]
Length = 249
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 130/246 (52%), Gaps = 26/246 (10%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKGAQDAK+AK ++++ +E+ A ++G P+P N L A + A+E+++PKD VER
Sbjct: 10 IMHRKGAQDAKRAKQFAKVIREITVAAREGMPDPAMNPRLRAAISAAREVNMPKDTVERA 69
Query: 143 IKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+AS G + ++E YE YG GV+++VE LTD R+ + VR GG + + S
Sbjct: 70 IKKASGAGGGDDYMEVRYEGYGPAGVAVIVEGLTDNRNRTASDVRAAFSKHGGSLGETNS 129
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
V F F R V+ A +D L++ L+AGAE+V + + ++V
Sbjct: 130 VSFMFTRLGVITYPLDAASEDDLIEAGLEAGAENV------------ETVDGMHEVTCPV 177
Query: 262 DNYTDITTKLREAGIPFETDNGS------ELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+++ + L ET G + P T+E+D++ +LI L + DDV
Sbjct: 178 ESFFAVRDAL-------ETRFGEPASAKLDWRPGNTVELDEDKARSVFKLIDTLEDHDDV 230
Query: 316 DAVYTD 321
AVY +
Sbjct: 231 QAVYAN 236
>gi|253699569|ref|YP_003020758.1| hypothetical protein GM21_0933 [Geobacter sp. M21]
gi|259710172|sp|C6E1T1.1|Y933_GEOSM RecName: Full=Probable transcriptional regulatory protein GM21_0933
gi|251774419|gb|ACT17000.1| protein of unknown function DUF28 [Geobacter sp. M21]
Length = 247
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 84/246 (34%), Positives = 137/246 (55%), Gaps = 19/246 (7%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ S I +KGA DAK+ K+++++ KE+ A K GG +P N L ++KAK ++PKD
Sbjct: 6 KWSTIKHKKGAADAKRGKIFTKIIKEITVAAKLGGGDPDGNPRLRTAIDKAKGENMPKDN 65
Query: 139 VERNIKRASEKGQEA--FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKM 196
VER IK+ G E + E YE YG GG +++VEV+TD R+V+ VR + C G M
Sbjct: 66 VERAIKKGV-GGLEGTTYEETTYEGYGPGGTAVLVEVMTDNRNRTVSDVRSIFTKCNGNM 124
Query: 197 ADPGSVMFKF-RRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ G V + F ++ +V K D DK L + +++AGA+DV TDED Y
Sbjct: 125 GESGCVSWLFDKKGLLVFPKSIDFDK--LFEASIEAGADDV---------TDEDEQ---Y 170
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+V++ + + T L AG E+ + ++P T ++++ + E +L+ ++ + DDV
Sbjct: 171 EVLTDPSAFHQVKTALEGAGFKAESAEIT-MIPQTMVKLEGKNAENMLKLMDRMEDNDDV 229
Query: 316 DAVYTD 321
VY +
Sbjct: 230 QNVYAN 235
>gi|225628286|ref|ZP_03786320.1| conserved hypothetical protein [Brucella ceti str. Cudo]
gi|225616132|gb|EEH13180.1| conserved hypothetical protein [Brucella ceti str. Cudo]
Length = 265
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 80/250 (32%), Positives = 129/250 (51%), Gaps = 13/250 (5%)
Query: 72 APVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKE 131
P+ + I RKG QDA ++K++S++ +E+ A K+G P+P N L ++ AK
Sbjct: 16 GPMAGHSQFKNIMHRKGRQDAVRSKMFSKLAREITVAAKQGLPDPAMNPRLRLAIQNAKA 75
Query: 132 LDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKD 191
+PKD +ER IK+A+ E + E YE G GGVS++VE LTD R+ + VR
Sbjct: 76 QSMPKDNIERAIKKAAGNDGENYDEVRYEGRGPGGVSVIVEALTDNRNRTASNVRAAFTK 135
Query: 192 CGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRA 251
GG + + GSV F F R + K D D++++ A++AGAEDV
Sbjct: 136 SGGSLGETGSVSFMFDRVGEIIYKPEAGDADKVMEAAIEAGAEDV------------QSG 183
Query: 252 ERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLE 311
E + ++ ++ +++ L EA + + P T E+D+E +L++ L +
Sbjct: 184 EDGHVILCAFEDIGEVSKAL-EAALGEAESIKTIWKPQTNTELDEEKARSVLKLLSVLED 242
Query: 312 LDDVDAVYTD 321
DDV VYT+
Sbjct: 243 DDDVQNVYTN 252
>gi|375143655|ref|YP_005006096.1| hypothetical protein [Niastella koreensis GR20-10]
gi|361057701|gb|AEV96692.1| UPF0082 protein yeeN [Niastella koreensis GR20-10]
Length = 240
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 128/230 (55%), Gaps = 10/230 (4%)
Query: 93 KKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQE 152
+ AK ++R+GKE+ AVK GGP+P++N L + AK +++PKD VE IKRAS K E
Sbjct: 18 RMAKQFTRIGKEIAIAVKAGGPDPSTNPALRRCFQNAKSVNMPKDRVEAAIKRASGKEME 77
Query: 153 AFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVV 212
F E +YE YG GV+I+VE TD R+VA ++ + G + + GSV F+F++ V
Sbjct: 78 NFDEILYEGYGPNGVAILVETATDNHVRTVANLKAIFNKGNGTLGNSGSVSFQFKKMGVF 137
Query: 213 NIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLR 272
+K +D L +DAG E++ E T E+ E + +++ ++ L
Sbjct: 138 KLKPEGLSQDDLELELIDAGLEEMGE------GTGEN-GEPVLVIRVAFNDFGNMQKALE 190
Query: 273 EAGI-PFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
E I P + E +P TT+++ +EA + +L+ K+ + DDV V+ +
Sbjct: 191 EKNITPISAE--VEWIPGTTVQLGEEAAQEVLKLVDKIEQDDDVQKVFHN 238
>gi|330829086|ref|YP_004392038.1| protein YebC [Aeromonas veronii B565]
gi|406677716|ref|ZP_11084896.1| YebC/PmpR family DNA-binding regulatory protein [Aeromonas veronii
AMC35]
gi|423202154|ref|ZP_17188733.1| YebC/PmpR family DNA-binding regulatory protein [Aeromonas veronii
AER39]
gi|423207361|ref|ZP_17193917.1| YebC/PmpR family DNA-binding regulatory protein [Aeromonas veronii
AMC34]
gi|423210222|ref|ZP_17196776.1| YebC/PmpR family DNA-binding regulatory protein [Aeromonas veronii
AER397]
gi|328804222|gb|AEB49421.1| Protein YebC [Aeromonas veronii B565]
gi|404615306|gb|EKB12278.1| YebC/PmpR family DNA-binding regulatory protein [Aeromonas veronii
AER39]
gi|404616110|gb|EKB13068.1| YebC/PmpR family DNA-binding regulatory protein [Aeromonas veronii
AER397]
gi|404620428|gb|EKB17325.1| YebC/PmpR family DNA-binding regulatory protein [Aeromonas veronii
AMC34]
gi|404623523|gb|EKB20373.1| YebC/PmpR family DNA-binding regulatory protein [Aeromonas veronii
AMC35]
Length = 246
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 128/240 (53%), Gaps = 15/240 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAK+ K+++++ +E+ ++ + G +P +N L A + A ++ +D +
Sbjct: 8 ANIKHRKAAQDAKRGKIFTKLIREITTSARLGDADPANNPRLRAAVTAALTNNMTRDTIN 67
Query: 141 RNIKRASEKGQEAFIEK-VYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I+R + G +E VYE YG G +++VE LTD R+VA VR CGG +
Sbjct: 68 RAIQRGAGGGDGEQLETIVYEGYGPAGSAVMVECLTDNRNRTVAEVRHAFSKCGGNLGTD 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F + + + F D+D L+D AL+AGA+DV+ ED T E V +
Sbjct: 128 GSVAYLFSKKGL--LTFVGVDEDALMDAALEAGADDVV---TEEDGTIE--------VYT 174
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
T +++ + L AG ++ + ++P T E+D E LI L +LDDV VY
Sbjct: 175 TPNDFGTVLDGLEAAGFKAQSAEVT-MIPSTEAELDAETAPKLMRLIDMLEDLDDVQEVY 233
>gi|114570983|ref|YP_757663.1| hypothetical protein Mmar10_2433 [Maricaulis maris MCS10]
gi|122315328|sp|Q0ALW8.1|Y2433_MARMM RecName: Full=Probable transcriptional regulatory protein
Mmar10_2433
gi|114341445|gb|ABI66725.1| protein of unknown function DUF28 [Maricaulis maris MCS10]
Length = 253
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 128/243 (52%), Gaps = 11/243 (4%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKG QD ++KL+SR+ KE+ A K GGP+ +N L + AK +PKD ++
Sbjct: 8 ANIQHRKGRQDKLRSKLFSRLSKEISIAAKLGGPDVDANPRLRLAVSNAKGQSMPKDNIQ 67
Query: 141 RNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
R I +AS E+F + YE +G G+ ++VEV TD R+ A VR GG + + G
Sbjct: 68 RAIDKASGGDDESFEDIRYEGFGPAGIGVIVEVSTDNKNRAAAEVRTAFAKNGGNLGETG 127
Query: 201 SVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
SV F F + + AD+D +++ A++AGAEDV P +ED+ E + + +
Sbjct: 128 SVAFMFDNVGEIRYPLSKADEDTMMEAAIEAGAEDVASEPGDEDNEGE------HVIYTA 181
Query: 261 SDNYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDVDAV 318
++ ++ L FE + ++L+ P IEV + + +++ L + DDV V
Sbjct: 182 REDLMEVVGGLSAT---FEDPSSAKLIWRPQNLIEVTGDKVATLMKMMEMLEDSDDVQNV 238
Query: 319 YTD 321
Y +
Sbjct: 239 YAN 241
>gi|17982216|gb|AAL51502.1| hypothetical cytosolic protein [Brucella melitensis bv. 1 str. 16M]
Length = 255
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 80/250 (32%), Positives = 129/250 (51%), Gaps = 13/250 (5%)
Query: 72 APVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKE 131
P+ + I RKG QDA ++K++S++ +E+ A K+G P+P N L ++ AK
Sbjct: 6 GPMAGHSQFKNIMHRKGRQDAVRSKMFSKLAREITVAAKQGLPDPAMNPRLRLAIQNAKA 65
Query: 132 LDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKD 191
+PKD +ER IK+A+ E + E YE G GGVS++VE LTD R+ + VR
Sbjct: 66 QSMPKDNIERAIKKAAGNDGENYDEVRYEGRGPGGVSVIVEALTDNRNRTASNVRAAFTK 125
Query: 192 CGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRA 251
GG + + GSV F F R + K D D++++ A++AGAEDV
Sbjct: 126 SGGSLGETGSVSFMFDRVGEIVYKPEAGDADKVMEAAIEAGAEDV------------QSG 173
Query: 252 ERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLE 311
E + ++ ++ +++ L EA + + P T E+D+E +L++ L +
Sbjct: 174 EDGHVILCAFEDIGEVSKAL-EAALGEAESIKTIWKPQTNTELDEEKARSVLKLLSVLED 232
Query: 312 LDDVDAVYTD 321
DDV VYT+
Sbjct: 233 DDDVQNVYTN 242
>gi|161353571|ref|NP_463358.2| hypothetical protein STM4499 [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|167991288|ref|ZP_02572387.1| conserved hypothetical protein TIGR01033 [Salmonella enterica
subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168244012|ref|ZP_02668944.1| conserved hypothetical protein TIGR01033 [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|168821057|ref|ZP_02833057.1| conserved hypothetical protein TIGR01033 [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|194448384|ref|YP_002048518.1| hypothetical protein SeHA_C4901 [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|374982579|ref|ZP_09723900.1| hypothetical protein SEE_04731 [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|378453465|ref|YP_005240825.1| hypothetical protein STM14_5398 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|378987167|ref|YP_005250323.1| hypothetical protein STMDT12_C46270 [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|383499058|ref|YP_005399747.1| hypothetical protein UMN798_4869 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|386589792|ref|YP_006086192.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Heidelberg str. B182]
gi|409248211|ref|YP_006888901.1| UPF0082 protein Gmet_0743 [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|417522381|ref|ZP_12183868.1| hypothetical protein LTSEUGA_6026 [Salmonella enterica subsp.
enterica serovar Uganda str. R8-3404]
gi|417543612|ref|ZP_12194738.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Wandsworth str. A4-580]
gi|419731736|ref|ZP_14258645.1| hypothetical protein SEEH1579_10182 [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|419733254|ref|ZP_14260154.1| hypothetical protein SEEH1563_09411 [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|419739899|ref|ZP_14266639.1| hypothetical protein SEEH1573_04416 [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|419742236|ref|ZP_14268913.1| hypothetical protein SEEH1566_03134 [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|419748648|ref|ZP_14275141.1| hypothetical protein SEEH1565_06021 [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41565]
gi|421572165|ref|ZP_16017824.1| hypothetical protein CFSAN00322_18246 [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|421576632|ref|ZP_16022226.1| hypothetical protein CFSAN00325_17455 [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|421581378|ref|ZP_16026924.1| hypothetical protein CFSAN00326_18271 [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|421583967|ref|ZP_16029483.1| hypothetical protein CFSAN00328_08310 [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
gi|422028741|ref|ZP_16375036.1| hypothetical protein B571_22408 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|422033792|ref|ZP_16379855.1| hypothetical protein B572_22603 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|427557945|ref|ZP_18930361.1| hypothetical protein B576_22612 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|427576013|ref|ZP_18934949.1| hypothetical protein B577_21410 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|427597644|ref|ZP_18939869.1| hypothetical protein B573_22039 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|427622028|ref|ZP_18944751.1| hypothetical protein B574_22386 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
gi|427646248|ref|ZP_18949638.1| hypothetical protein B575_22660 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|427658749|ref|ZP_18954353.1| hypothetical protein B578_22078 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|427664034|ref|ZP_18959268.1| hypothetical protein B579_22737 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|427682144|ref|ZP_18964155.1| hypothetical protein B580_22862 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
gi|427802262|ref|ZP_18969687.1| hypothetical protein B581_26377 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm5]
gi|49066050|sp|Q8ZK08.2|YEEN_SALTY RecName: Full=Probable transcriptional regulatory protein YeeN
gi|194406688|gb|ACF66907.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|205330337|gb|EDZ17101.1| conserved hypothetical protein TIGR01033 [Salmonella enterica
subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205337024|gb|EDZ23788.1| conserved hypothetical protein TIGR01033 [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|205342212|gb|EDZ28976.1| conserved hypothetical protein TIGR01033 [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|267996844|gb|ACY91729.1| hypothetical protein STM14_5398 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|312915596|dbj|BAJ39570.1| hypothetical protein STMDT12_C46270 [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|320088945|emb|CBY98702.1| UPF0082 protein Gmet_0743 [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|321222533|gb|EFX47605.1| hypothetical protein SEE_04731 [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|353639110|gb|EHC84481.1| hypothetical protein LTSEUGA_6026 [Salmonella enterica subsp.
enterica serovar Uganda str. R8-3404]
gi|353656399|gb|EHC97162.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Wandsworth str. A4-580]
gi|380465879|gb|AFD61282.1| hypothetical protein UMN798_4869 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|381290763|gb|EIC32019.1| hypothetical protein SEEH1579_10182 [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|381297322|gb|EIC38415.1| hypothetical protein SEEH1573_04416 [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|381300615|gb|EIC41674.1| hypothetical protein SEEH1563_09411 [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|381313502|gb|EIC54285.1| hypothetical protein SEEH1565_06021 [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41565]
gi|381314660|gb|EIC55428.1| hypothetical protein SEEH1566_03134 [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|383796836|gb|AFH43918.1| Transcriptional regulator [Salmonella enterica subsp. enterica
serovar Heidelberg str. B182]
gi|402517592|gb|EJW24990.1| hypothetical protein CFSAN00325_17455 [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|402517904|gb|EJW25299.1| hypothetical protein CFSAN00326_18271 [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|402518403|gb|EJW25787.1| hypothetical protein CFSAN00322_18246 [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|402531868|gb|EJW39073.1| hypothetical protein CFSAN00328_08310 [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
gi|414011042|gb|EKS95020.1| hypothetical protein B571_22408 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|414011790|gb|EKS95734.1| hypothetical protein B576_22612 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|414012275|gb|EKS96198.1| hypothetical protein B572_22603 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|414026219|gb|EKT09496.1| hypothetical protein B577_21410 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|414026961|gb|EKT10216.1| hypothetical protein B573_22039 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|414029445|gb|EKT12604.1| hypothetical protein B574_22386 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
gi|414040306|gb|EKT22933.1| hypothetical protein B575_22660 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|414041081|gb|EKT23668.1| hypothetical protein B578_22078 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|414045529|gb|EKT27915.1| hypothetical protein B579_22737 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|414054556|gb|EKT36498.1| hypothetical protein B580_22862 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
gi|414059092|gb|EKT40700.1| hypothetical protein B581_26377 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm5]
Length = 238
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 131/244 (53%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ +A K+G P+P SN+ L V+E+AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGATSKVYAKFGVEIYAAAKQGEPDPESNSALKFVIERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A G E F++ YE +G G ++ E LT + R++A +R + GG
Sbjct: 61 KHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMVIAETLTSNVNRTIANIRTIFNKKGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ G+V + F V+ K T D D + +I LDA DV D T+E+ Y
Sbjct: 121 IGAAGAVSYMFDNTGVIVFKGT--DPDHIFEILLDAEV-DV------RDVTEEEGNIVIY 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+D + I L+ AGI + E++ + +E+ E +E+ + L+ L + DDV
Sbjct: 172 --TEATDLHKGIAA-LKAAGISEFSTTELEMIAQSEVELSPEDLEIFEGLVDALEDDDDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QKVY 232
>gi|405979841|ref|ZP_11038182.1| YebC/PmpR family DNA-binding regulatory protein [Actinomyces
turicensis ACS-279-V-Col4]
gi|404391216|gb|EJZ86280.1| YebC/PmpR family DNA-binding regulatory protein [Actinomyces
turicensis ACS-279-V-Col4]
Length = 253
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 129/239 (53%), Gaps = 16/239 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++R+ K + A + GG +P N L ++KAK+ VP D ++R +KR
Sbjct: 13 KKAAIDAKRGKLFARLIKNIEVAARTGGGDPAGNPTLYDAIQKAKKNSVPADNIDRAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S E G + +YE YG GV+ +VE LTD R+ + VR GG +ADPGSV
Sbjct: 73 GSGAEAGGANYETIMYEGYGPNGVAFLVECLTDNRNRAASDVRLGFTRQGGSLADPGSVS 132
Query: 204 FKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
+ F R +V + D D+D +++ LDAGAE+V DT + + + S +
Sbjct: 133 YLFSRRGIVEVGAADGVDEDTIMEAVLDAGAEEVT-------DTGDG-----FVIESAAS 180
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ ++ L+ AGI +++ + + T +EVD E ++LI L E DDV +Y +
Sbjct: 181 DVVEVRKALQSAGIDYDSAE-VQFVASTDVEVDLEGALKVQKLIDALEESDDVQNIYNN 238
>gi|210623590|ref|ZP_03293916.1| hypothetical protein CLOHIR_01866 [Clostridium hiranonis DSM 13275]
gi|210153460|gb|EEA84466.1| hypothetical protein CLOHIR_01866 [Clostridium hiranonis DSM 13275]
Length = 240
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 130/241 (53%), Gaps = 16/241 (6%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR + I RKG QDA++AK++++ + + A K GG +P N L +EKAK ++P
Sbjct: 1 MGRIGN-IINRKGKQDAQRAKVFTKHARAIAVAAKDGGGDPEYNAALKTAIEKAKADNMP 59
Query: 136 KDIVERNIKRASEKGQ-EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGG 194
D ++R I + + G E++ VYE YG GGV+++V LTD R+ +R GG
Sbjct: 60 NDNIDRAIAKGTGAGNSESYETIVYEGYGPGGVAVIVNALTDNKNRTAGNIRYYFDKNGG 119
Query: 195 KMADPGSVMFKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAER 253
+ G V F F R + + D +++L+D AL+AGAED I V ED
Sbjct: 120 NLGTSGCVSFMFDRKGQILVAAEDGVSEEELMDAALEAGAEDFI---VEEDG-------- 168
Query: 254 YYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELD 313
++V++ +++ + L+EAG F + + +++P TT E+ ++ E + +LE D
Sbjct: 169 -FEVITEPNDFAAVRDALKEAGYEFISAD-VKMIPQTTTELTEDGQRNAMEKLIDMLEDD 226
Query: 314 D 314
D
Sbjct: 227 D 227
>gi|315604288|ref|ZP_07879354.1| YebC like protein [Actinomyces sp. oral taxon 180 str. F0310]
gi|315313994|gb|EFU62045.1| YebC like protein [Actinomyces sp. oral taxon 180 str. F0310]
Length = 253
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 86/240 (35%), Positives = 133/240 (55%), Gaps = 18/240 (7%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++R+ K + A + GG +P N L ++KAK+ VP D ++R +KR
Sbjct: 13 KKAAIDAKRGKLFARLIKNIEVAARTGGGDPAGNPTLYDAIQKAKKNSVPADNIDRAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S E G + +YE YG GV+ +VE LTD R+ + VR GG +ADPGSV
Sbjct: 73 GSGAEAGGANYETIMYEGYGPSGVAFLVECLTDNRNRAASDVRLGFTRHGGSLADPGSVS 132
Query: 204 FKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
+ F R VV + D D++ ++ LDAGAE+V ED E + + S
Sbjct: 133 YLFSRRGVVEVPAADGVDEESIMMAVLDAGAEEV-----------EDAGE-LFVIESDPK 180
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDE-AMELNKELIAKLLELDDVDAVYTD 321
+ + + L+EAGI +++ + + T +E+D E A+++NK LI L + DDV +YT+
Sbjct: 181 DVVAVRSALQEAGIDYDSAE-VQFVASTEVELDLEGALKVNK-LIDALEDSDDVQNIYTN 238
>gi|182439807|ref|YP_001827526.1| hypothetical protein SGR_6014 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326780471|ref|ZP_08239736.1| UPF0082 protein yeeN [Streptomyces griseus XylebKG-1]
gi|226707774|sp|B1W3G1.1|Y6014_STRGG RecName: Full=Probable transcriptional regulatory protein SGR_6014
gi|178468323|dbj|BAG22843.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326660804|gb|EGE45650.1| UPF0082 protein yeeN [Streptomyces griseus XylebKG-1]
Length = 250
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 128/238 (53%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K DAK+ KL++++ K + A + GG +P N L ++KAK+ VP +E +KR
Sbjct: 13 KKAVIDAKRGKLFAKLIKNIEVAARSGGVDPDGNPTLVDAIQKAKKSSVPNKNIESAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
E G + +YE YG GV++++E LTD R+ + VR + GG MADPGSV
Sbjct: 73 GGGLEAGGADYETIMYEGYGPNGVAVLIECLTDNRNRAASDVRVAMTRNGGSMADPGSVS 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R VV + + +D +L LDAGAE+V +D E ++VVS + +
Sbjct: 133 YLFNRKGVVILPKGELTEDDVLGAVLDAGAEEV-------NDLGE-----TFEVVSEATD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ T L+EAGI +++ + LP +E+D+E +LI L + DDV V+ +
Sbjct: 181 MVAVRTALQEAGIDYDSAE-ANFLPTMQVELDEEGARKIFKLIDALEDSDDVQNVFAN 237
>gi|433604879|ref|YP_007037248.1| hypothetical protein BN6_30680 [Saccharothrix espanaensis DSM
44229]
gi|407882732|emb|CCH30375.1| hypothetical protein BN6_30680 [Saccharothrix espanaensis DSM
44229]
Length = 250
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 128/238 (53%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++R+ K + A + GG +P N L ++KA++ VP D +ER KR
Sbjct: 13 KKAAIDAKRGKLFARLIKNIEVAARTGGSDPDGNPTLYDAIQKARKNSVPLDNIERARKR 72
Query: 146 ASEKGQEA--FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
+ + +YE YG GV+++VE LTD R+ + VR + GG MADPGSV
Sbjct: 73 GGGEEAGGADWQTIMYEGYGPNGVAVLVECLTDNRNRAASEVRTAMTRNGGSMADPGSVS 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R VV + D +D +L LDAGAE+V +D E Y+VVS + +
Sbjct: 133 YMFTRKGVVIVPKGDLAEDDVLMAVLDAGAEEV-------NDLGES-----YEVVSEAGD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ T L++AG +E+ + LP T++++ E +LI L + DDV V+ +
Sbjct: 181 MVAVRTALQDAGYDYESAE-ANFLPSVTVQLEAEGARKIFKLIDALEDCDDVQNVFAN 237
>gi|255319220|ref|ZP_05360437.1| conserved hypothetical protein [Acinetobacter radioresistens SK82]
gi|262379722|ref|ZP_06072878.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
gi|421465280|ref|ZP_15913968.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
radioresistens WC-A-157]
gi|255303613|gb|EET82813.1| conserved hypothetical protein [Acinetobacter radioresistens SK82]
gi|262299179|gb|EEY87092.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
gi|400204542|gb|EJO35526.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
radioresistens WC-A-157]
Length = 249
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 141/246 (57%), Gaps = 22/246 (8%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK QDA + K++++ +E+++A K GGP+ SN L AV+EKA +++ +D +
Sbjct: 8 ANIKHRKAKQDASRGKVFTKYIREIVTAAKLGGPDAASNPRLRAVVEKALSVNMTRDTIN 67
Query: 141 RNIKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I+R A + + E YE YG GGV+++VE +TD + R+V VR G +
Sbjct: 68 RAIQRGAGGEDNDDLKEITYEGYGTGGVAVLVETMTDNLNRTVPDVRHCFSKTNGNLGTS 127
Query: 200 GSVMFKFRRARVVNIKFTDAD-KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
GSV + F + I F D ++++L++AL+AGAED+ ++ED+ V+
Sbjct: 128 GSVAYLFTKRG--EISFDDLSLEEKILEVALEAGAEDI---EISEDE---------ILVI 173
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELL-PITTIEVD--DEAMELNKELIAKLLELDDV 315
+T +++ D+ L AG+ ++DN ++ P T E+ D+A ++ K +I L +LDDV
Sbjct: 174 TTPESFGDVQDALSAAGL--KSDNAEVVMSPSTKAEITDIDQAKQIMK-MIDMLEDLDDV 230
Query: 316 DAVYTD 321
VYT+
Sbjct: 231 QNVYTN 236
>gi|171780298|ref|ZP_02921202.1| hypothetical protein STRINF_02086 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|379705893|ref|YP_005204352.1| YebC/PmpR family DNA-binding regulatory protein [Streptococcus
infantarius subsp. infantarius CJ18]
gi|171281646|gb|EDT47081.1| DNA-binding regulatory protein, YebC/PmpR family [Streptococcus
infantarius subsp. infantarius ATCC BAA-102]
gi|374682592|gb|AEZ62881.1| DNA-binding regulatory protein, YebC/PmpR family [Streptococcus
infantarius subsp. infantarius CJ18]
Length = 238
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 127/246 (51%), Gaps = 16/246 (6%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ A KKG P+P SN+ L VLE+AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGANSKVYAKFGVEIYVAAKKGEPDPESNSALKFVLERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K +++R I +A E F+E YE +G G I+V+ LT + R+ A +R GG
Sbjct: 61 KHVIDRAIDKAKGNTDETFVEGRYEGFGPNGSMIIVDTLTSNVNRTAANLRTAFGKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADK--DQLLDIALDAGAEDVIEPPVNEDDTDEDRAER 253
M GSV + F + V+ DAD +QLL+ +D ED ED
Sbjct: 121 MGASGSVSYMFDKKGVIVFDGNDADSIFEQLLEAEVDV-----------EDVEAEDGVVT 169
Query: 254 YYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELD 313
Y + +D + I LR GI E++P + + ++ E +E+ ++LI L + +
Sbjct: 170 VY--TAPTDLHKGIEA-LRANGIEEFKVTELEMIPQSEVTLEGEDLEMFEKLIDTLEDDE 226
Query: 314 DVDAVY 319
DV VY
Sbjct: 227 DVQKVY 232
>gi|410420945|ref|YP_006901394.1| hypothetical protein BN115_3165 [Bordetella bronchiseptica MO149]
gi|408448240|emb|CCJ59921.1| conserved hypothetical protein [Bordetella bronchiseptica MO149]
Length = 243
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 128/242 (52%), Gaps = 14/242 (5%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKG QDAK+ KL++++ +E+ A + GG +P SN L +KA + ++PKD ++
Sbjct: 8 ANIQHRKGRQDAKRGKLWTKIIREITVAARAGGADPDSNPRLRMAWDKATDANMPKDNIQ 67
Query: 141 RNIKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I+R A E++ E YE YG GG +++V+ +TD TR+VA VR GG +
Sbjct: 68 RAIQRGAGGADGESYEEVRYEGYGIGGAAVIVDCMTDNRTRTVAEVRHAFAKHGGNLGQE 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV F F+ + ++ +++ AL+AGAEDV TDE E +VV
Sbjct: 128 GSVAFMFKHCGQF-VFAPGTSEEAVMEAALEAGAEDVA--------TDE---EGVIEVVC 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
++T + AG+ E D G + + E+ E ++L+ L LDDV VY
Sbjct: 176 APADFTAVRQAFEAAGLKAEVD-GVVMKALNETELTGEDAVKMQKLLDVLESLDDVQEVY 234
Query: 320 TD 321
T+
Sbjct: 235 TN 236
>gi|299144379|ref|ZP_07037459.1| glucose-1-phosphate adenylyltransferase [Peptoniphilus sp. oral
taxon 386 str. F0131]
gi|298518864|gb|EFI42603.1| glucose-1-phosphate adenylyltransferase [Peptoniphilus sp. oral
taxon 386 str. F0131]
Length = 246
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 138/247 (55%), Gaps = 18/247 (7%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +KG +DA++ ++++++G+ ++ AVK+GGP+P N L ++KAK ++P D
Sbjct: 6 KWNNIKNKKGKEDARRGRIFTKLGRYIMVAVKEGGPDPEYNPSLKVAIDKAKAENMPNDN 65
Query: 139 VERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ER IK+ + ++ E++ YE YG G++I+V LTD R+ +R GG +
Sbjct: 66 IERAIKKGAGADADSNYEEITYEGYGPSGIAIMVNCLTDNRNRTAPDIRHAFDKYGGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
PG V F F + + I+ TD+ D D+L+ A++ GA+DVI DR E ++
Sbjct: 126 QPGCVSFMFDKKGQLGIEKTDSIDADELMMSAIELGADDVI-----------DR-EDVFE 173
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLP--ITTIEVDDEAMELNKELIAKLLELDD 314
+++ + Y + L E G F + S +P T +E +D+ ++ K LI L + DD
Sbjct: 174 ILTAPEEYHVVRNGLEEMGYEFIHSDIS-YIPQNYTALESEDDIKKMIK-LIDILEDNDD 231
Query: 315 VDAVYTD 321
V VYT+
Sbjct: 232 VQEVYTN 238
>gi|271967394|ref|YP_003341590.1| hypothetical protein [Streptosporangium roseum DSM 43021]
gi|270510569|gb|ACZ88847.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021]
Length = 250
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 127/238 (53%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A D+K+ KL++++ K + A + GGP+P N L + KA++ VP D +ER KR
Sbjct: 13 KKAALDSKRGKLFAKLIKNIEVAARTGGPDPDGNPTLYDAITKARKSSVPIDNIERARKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
E G + +YE Y GGV++++E LTD R+ + VR + GG +ADPGSV
Sbjct: 73 GGGLEAGGADWQTIMYEGYAPGGVAVLIECLTDNRNRAASEVRVALTRNGGSLADPGSVS 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R VV + + +D +L LDAGAE+V D D+ ++VVS + +
Sbjct: 133 YMFNRKGVVLVPKGELSEDDVLTAVLDAGAEEV------NDLGDQ------FEVVSEATD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ L+EAGI +++ S LP + +D++ LI L + DDV V+ +
Sbjct: 181 LVPVRKALQEAGIDYDSAE-SSFLPTMNVPLDEDGARKVFRLIDALEDSDDVQNVWAN 237
>gi|33593302|ref|NP_880946.1| hypothetical protein BP2308 [Bordetella pertussis Tohama I]
gi|384204597|ref|YP_005590336.1| hypothetical protein BPTD_2267 [Bordetella pertussis CS]
gi|408414767|ref|YP_006625474.1| hypothetical protein BN118_0760 [Bordetella pertussis 18323]
gi|49037283|sp|Q7VWE9.1|Y2308_BORPE RecName: Full=Probable transcriptional regulatory protein BP2308
gi|33572658|emb|CAE42581.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
gi|332382711|gb|AEE67558.1| hypothetical protein BPTD_2267 [Bordetella pertussis CS]
gi|401776937|emb|CCJ62185.1| conserved hypothetical protein [Bordetella pertussis 18323]
Length = 243
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 128/242 (52%), Gaps = 14/242 (5%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKG QDAK+ KL++++ +E+ A + GG +P SN L +KA + ++PKD ++
Sbjct: 8 ANIQHRKGRQDAKRGKLWTKIIREITVAARAGGADPDSNPRLRMAWDKATDANMPKDNIQ 67
Query: 141 RNIKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I+R A E++ E YE YG GG +++V+ +TD TR+VA VR GG +
Sbjct: 68 RAIQRGAGGADGESYEEVRYEGYGIGGAAVIVDCMTDNRTRTVAEVRHAFAKHGGNLGQE 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV F F+ + ++ +++ AL+AGAEDV TDE E +VV
Sbjct: 128 GSVAFMFKHCGQF-VFAPGTSEETVMEAALEAGAEDVA--------TDE---EGVIEVVC 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
++T + AG+ E D G + + E+ E ++L+ L LDDV VY
Sbjct: 176 APADFTAVRQAFEAAGLKAEVD-GVVMKALNETELTGEDAVKMQKLLDVLESLDDVQEVY 234
Query: 320 TD 321
T+
Sbjct: 235 TN 236
>gi|291612981|ref|YP_003523138.1| hypothetical protein Slit_0511 [Sideroxydans lithotrophicus ES-1]
gi|291583093|gb|ADE10751.1| protein of unknown function DUF28 [Sideroxydans lithotrophicus
ES-1]
Length = 243
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 133/245 (54%), Gaps = 16/245 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKG QDAK+ ++++R+ KE+ A K GG +P N L +EKA + ++PKD VE
Sbjct: 8 ANIQHRKGRQDAKRGQIFTRLIKEITVASKLGGSDPDINPRLRLAMEKAYDQNMPKDNVE 67
Query: 141 RNIKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IKR A E ++E YE YG G +++V+ +TD TR+VA VR GG +
Sbjct: 68 RAIKRGAGELEGVDYMELRYEGYGINGAAVMVDCMTDNKTRTVADVRHAFTKYGGNLGTD 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV F F+ + I D++ L+++ALDAGAED+ VN DD +V++
Sbjct: 128 GSVSFLFKHCGHM-IFAPGTDENALMEVALDAGAEDI----VNNDDGS-------IEVIT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+ ++ + +L AG F+ + G + P + E ++L+ L ++ DV V
Sbjct: 176 SPHDFVAVKQRLEAAG--FKPEMGEVTMRPENEVVFTGEDAAKMQKLLDALEDVGDVQEV 233
Query: 319 YTDQI 323
YT+ +
Sbjct: 234 YTNAV 238
>gi|160946336|ref|ZP_02093545.1| hypothetical protein PEPMIC_00296 [Parvimonas micra ATCC 33270]
gi|158447452|gb|EDP24447.1| DNA-binding regulatory protein, YebC/PmpR family [Parvimonas micra
ATCC 33270]
Length = 247
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 128/243 (52%), Gaps = 15/243 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ S I +KG +DA++ K+++++ + +I AVK+GG +P N L +EKAK ++P D
Sbjct: 6 KWSTIKHKKGKEDARRGKIFTKLARYIIVAVKEGGADPEYNPSLKTAIEKAKAENMPNDN 65
Query: 139 VERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ER +K+ + G + E + YE YG G+++VVE LTD R+ A VR GG +
Sbjct: 66 IERALKKGAGDGDSSNYETIIYEGYGPEGIAVVVECLTDNRNRTAADVRHAFDKHGGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV+F F + V+ I A++D L+D AL+ GA D + E Y +
Sbjct: 126 QNGSVLFMFEKKGVIVISRDQAEEDDLMDFALENGASDF------------ESDEEVYTI 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDD-EAMELNKELIAKLLELDDVD 316
S ++ + L+E G F E +P ++ + + ++ ++I +L + DDV
Sbjct: 174 YSEVSDFITLRDALQEKGYTFSACE-LEYVPNNNSQISNPDNIKKMVKMIDQLEDNDDVQ 232
Query: 317 AVY 319
VY
Sbjct: 233 NVY 235
>gi|336426918|ref|ZP_08606926.1| hypothetical protein HMPREF0994_02932 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336010558|gb|EGN40541.1| hypothetical protein HMPREF0994_02932 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 242
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 132/245 (53%), Gaps = 17/245 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +K DA K K+++ +G+E+ AVK+GG +P++N LA V+ KAK ++P D
Sbjct: 6 KFANIKHKKERNDAAKGKIFTILGREIAVAVKEGGSDPSNNFKLAQVIAKAKANNMPNDT 65
Query: 139 VERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
++R IK+A+ + G + YE YG G++I+V+ LTD R+ A VR G +
Sbjct: 66 IDRGIKKAAGDMGNVNYEYVTYEGYGPNGIAIIVDALTDNKNRTAANVRSAFTKGNGSIG 125
Query: 198 DPGSVMFKF--RRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
PG V F F R +++ + D + D L+ ALDAGAED E E+D+ +
Sbjct: 126 TPGCVSFMFDKRGQIIIDKEECDMEADDLMMTALDAGAEDFSE----EEDS--------F 173
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLEL-DD 314
++++ D+ + L EAGI + + ++P +E+ DE N LL+ DD
Sbjct: 174 EILTAPDDLETVQKALEEAGIAMASAEVT-MIPQNYVELTDETAIKNLNRTLDLLDAEDD 232
Query: 315 VDAVY 319
V AVY
Sbjct: 233 VQAVY 237
>gi|399887944|ref|ZP_10773821.1| hypothetical protein CarbS_05335 [Clostridium arbusti SL206]
Length = 245
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 135/241 (56%), Gaps = 16/241 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I +KG DA++ K+++++GKE+ A K G NP +N L V+ KAK ++P+D + R
Sbjct: 10 IQAKKGKADAQRGKIFTKIGKEIAVAAKDG-SNPDTNAKLRDVVAKAKANNMPQDTITRA 68
Query: 143 IKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+ A E + E VYE YG GV+I+V+VLTD RS + +R + GG + G
Sbjct: 69 IKKGAGELEGVNYEEIVYEGYGPAGVAIIVDVLTDNKNRSASNIRYIFDRNGGNLGANGC 128
Query: 202 VMFKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
V F F+R + I+ D D+D+++ ALDAGAED + E +++ +
Sbjct: 129 VSFMFQRKGQIIIEKKDGLDEDEVMMAALDAGAEDF------------NAEEEIFEITTA 176
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
++++ + L E+G F + + ++P T E++ E E +++I KL + DDV VY+
Sbjct: 177 MEDFSSVREALEESGYEFMSAELT-MIPDTLTELNMEDAEKVQDIIDKLEDDDDVQDVYS 235
Query: 321 D 321
+
Sbjct: 236 N 236
>gi|296330144|ref|ZP_06872626.1| hypothetical protein BSU6633_03532 [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305673388|ref|YP_003865060.1| hypothetical protein BSUW23_03475 [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296152733|gb|EFG93600.1| hypothetical protein BSU6633_03532 [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305411632|gb|ADM36751.1| conserved hypothetical protein [Bacillus subtilis subsp. spizizenii
str. W23]
Length = 239
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 127/244 (52%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K ++DA +++Y++ G+E+ A K+G P+P SN L VLE+AK VP
Sbjct: 1 MGRKWNNIKEKKASKDANTSRIYAKFGREIYVAAKQGEPDPESNQALKVVLERAKTYSVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K+I+ER I++A +E + E YE +G G I+V+ LT+ + R+ VR GG
Sbjct: 61 KNIIERAIEKAKGGAEENYDELRYEGFGPNGSMIIVDALTNNVNRTAPEVRAAFGKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
M GSV + F V+ + AD+ + + D D++E EDD+
Sbjct: 121 MGVSGSVAYMFDATAVIGVDGKTADEALEILMEADVDVRDILE----EDDS--------V 168
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
V + D + + + AG+ T +L + + + D+A E ++LI L +L+DV
Sbjct: 169 IVYAEPDQFHAVQEAFKNAGVEEFTVAELTMLAQSEVTLPDDAKEQFEKLIDALEDLEDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QQVY 232
>gi|269795056|ref|YP_003314511.1| hypothetical protein Sked_17500 [Sanguibacter keddieii DSM 10542]
gi|269097241|gb|ACZ21677.1| conserved hypothetical protein TIGR01033 [Sanguibacter keddieii DSM
10542]
Length = 252
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 83/240 (34%), Positives = 129/240 (53%), Gaps = 19/240 (7%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K DAK+ KL++++ K + A + GG + N L ++KAK+ VP D +ER +KR
Sbjct: 13 KKAVIDAKRGKLFAKLIKNIEVAARTGGGDINGNPTLFDAVQKAKKTSVPNDNIERALKR 72
Query: 146 ASEKGQEA----FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
S GQEA + +YE YG GG++ +VE LTD R+ A VR GG++ADPGS
Sbjct: 73 GS--GQEAGGADYQTIMYEGYGPGGIAFLVECLTDNKNRAAAEVRIAFTRNGGQLADPGS 130
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
V + F R VV + D+D +L+ L+AG E+V +D E ++V+S +
Sbjct: 131 VSYLFSRKGVVIVPKDGTDEDSVLEAVLEAGGEEV-------NDLGES-----FEVLSEA 178
Query: 262 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ + T L+EAGI +++ + P +EVD E L+ L + DDV V+ +
Sbjct: 179 TDLVAVRTALQEAGIEYDSAD-VVFHPSMQVEVDAEGARKALRLVDALEDSDDVQNVFAN 237
>gi|422417841|ref|ZP_16494796.1| hypothetical protein NT03LS_0469 [Listeria seeligeri FSL N1-067]
gi|422420956|ref|ZP_16497909.1| hypothetical protein NT04LS_0438 [Listeria seeligeri FSL S4-171]
gi|313634918|gb|EFS01318.1| hypothetical protein NT03LS_0469 [Listeria seeligeri FSL N1-067]
gi|313639563|gb|EFS04389.1| hypothetical protein NT04LS_0438 [Listeria seeligeri FSL S4-171]
Length = 239
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 132/244 (54%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K ++D +++Y++ G E+ A K G P+P SN L V+E+AK +VP
Sbjct: 1 MGRKWANIKEKKASKDKTNSRIYAKFGIEIYVAAKSGDPDPHSNQKLRFVIERAKTYNVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K I++R I++A G E + E YE +G G I+V+ LT+ + R+ + VR GG
Sbjct: 61 KHIIDRAIEKAKGTGDETYSELRYEGFGPSGSMIIVDALTNNVNRTASDVRAAYSKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
M GSV + F + ++ DA D+LL++ ++A DV D +DED Y
Sbjct: 121 MGVSGSVAYMFDNTAIFGVEGKDA--DELLELLMEADI-DV------RDISDEDGQAIIY 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+ +++ + L+ AGI T E++P I++ E +E ++LI L +L+DV
Sbjct: 172 ---AEPEDFHAVQEALKAAGIEEFTVAEIEMIPQNDIQLTGEDLEKFEKLIDALEDLEDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QKVY 232
>gi|126698375|ref|YP_001087272.1| hypothetical protein CD630_07950 [Clostridium difficile 630]
gi|254974417|ref|ZP_05270889.1| hypothetical protein CdifQC_03843 [Clostridium difficile QCD-66c26]
gi|255091808|ref|ZP_05321286.1| hypothetical protein CdifC_03985 [Clostridium difficile CIP 107932]
gi|255099910|ref|ZP_05328887.1| hypothetical protein CdifQCD-6_03840 [Clostridium difficile
QCD-63q42]
gi|255305799|ref|ZP_05349971.1| hypothetical protein CdifA_04350 [Clostridium difficile ATCC 43255]
gi|255313543|ref|ZP_05355126.1| hypothetical protein CdifQCD-7_04308 [Clostridium difficile
QCD-76w55]
gi|255516228|ref|ZP_05383904.1| hypothetical protein CdifQCD-_03887 [Clostridium difficile
QCD-97b34]
gi|255649325|ref|ZP_05396227.1| hypothetical protein CdifQCD_03942 [Clostridium difficile
QCD-37x79]
gi|260682495|ref|YP_003213780.1| hypothetical protein CD196_0745 [Clostridium difficile CD196]
gi|260686094|ref|YP_003217227.1| hypothetical protein CDR20291_0726 [Clostridium difficile R20291]
gi|306519420|ref|ZP_07405767.1| hypothetical protein CdifQ_04345 [Clostridium difficile QCD-32g58]
gi|384360074|ref|YP_006197926.1| hypothetical protein CDBI1_03830 [Clostridium difficile BI1]
gi|423082078|ref|ZP_17070673.1| DNA-binding regulatory protein, YebC/PmpR family [Clostridium
difficile 002-P50-2011]
gi|423085682|ref|ZP_17074124.1| DNA-binding regulatory protein, YebC/PmpR family [Clostridium
difficile 050-P50-2011]
gi|423090451|ref|ZP_17078750.1| DNA-binding regulatory protein, YebC/PmpR family [Clostridium
difficile 70-100-2010]
gi|118574401|sp|Q189Y9.1|Y795_CLOD6 RecName: Full=Probable transcriptional regulatory protein
CD630_07950
gi|115249812|emb|CAJ67629.1| conserved hypothetical protein, UPF0082 family [Clostridium
difficile 630]
gi|260208658|emb|CBA61422.1| conserved hypothetical protein [Clostridium difficile CD196]
gi|260212110|emb|CBE02729.1| conserved hypothetical protein [Clostridium difficile R20291]
gi|357549328|gb|EHJ31175.1| DNA-binding regulatory protein, YebC/PmpR family [Clostridium
difficile 002-P50-2011]
gi|357549599|gb|EHJ31445.1| DNA-binding regulatory protein, YebC/PmpR family [Clostridium
difficile 050-P50-2011]
gi|357556560|gb|EHJ38155.1| DNA-binding regulatory protein, YebC/PmpR family [Clostridium
difficile 70-100-2010]
Length = 239
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 134/246 (54%), Gaps = 15/246 (6%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR + I RKG QDA++AK++++ + + A K+GG +P N L +EKAK ++P
Sbjct: 1 MGRIGN-IINRKGKQDAQRAKIFTKHARAIAVAAKEGGADPEYNAALKTAIEKAKADNMP 59
Query: 136 KDIVER-NIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGG 194
D ++R K A E + VYE YG GGV+++VE LTD R+ VR GG
Sbjct: 60 NDNIDRAIAKGAGAGAGEDYETIVYEGYGPGGVAVIVETLTDNKNRTAGNVRYYFDKNGG 119
Query: 195 KMADPGSVMFKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAER 253
+ G V F F + + + D +++L+D+AL+AGAED I T+ED
Sbjct: 120 NLGTSGCVSFMFDKKGQILVGLGDGVSEEELMDVALEAGAEDFI--------TEEDG--- 168
Query: 254 YYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELD 313
Y++++T ++++ + +L+ G F + + + TT+ ++ +++ +L+ L E D
Sbjct: 169 -YEIITTPEDFSSVRDELKAKGYEFISADVKMIPQTTTVLTEESHLKMMNKLVDMLEEDD 227
Query: 314 DVDAVY 319
DV +Y
Sbjct: 228 DVQDIY 233
>gi|427819703|ref|ZP_18986766.1| conserved hypothetical protein [Bordetella bronchiseptica D445]
gi|427824823|ref|ZP_18991885.1| conserved hypothetical protein [Bordetella bronchiseptica Bbr77]
gi|410570703|emb|CCN18900.1| conserved hypothetical protein [Bordetella bronchiseptica D445]
gi|410590088|emb|CCN05166.1| conserved hypothetical protein [Bordetella bronchiseptica Bbr77]
Length = 243
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 128/242 (52%), Gaps = 14/242 (5%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKG QDAK+ KL++++ +E+ A + GG +P SN L +KA + ++PKD ++
Sbjct: 8 ANIQHRKGRQDAKRGKLWTKIIREITVAARAGGADPDSNPRLRMAWDKATDANMPKDNIQ 67
Query: 141 RNIKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I+R A E++ E YE YG GG +++V+ +TD TR+VA VR GG +
Sbjct: 68 RAIQRGAGGADGESYEEVRYEGYGIGGAAVIVDCMTDNRTRTVAEVRHAFAKHGGNLGQE 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV F F+ + ++ +++ AL+AGAEDV TDE E +VV
Sbjct: 128 GSVAFMFKHCGQF-VFAPGTSEEAVMEAALEAGAEDVA--------TDE---EGVIEVVC 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
++T + AG+ E D G + + E+ E ++L+ L LDDV VY
Sbjct: 176 APADFTAVRQAFETAGLKAEVD-GVVMKALNETELTGEDAVKMQKLLDVLESLDDVQEVY 234
Query: 320 TD 321
T+
Sbjct: 235 TN 236
>gi|225027968|ref|ZP_03717160.1| hypothetical protein EUBHAL_02228 [Eubacterium hallii DSM 3353]
gi|224954682|gb|EEG35891.1| DNA-binding regulatory protein, YebC/PmpR family [Eubacterium
hallii DSM 3353]
Length = 244
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 113/201 (56%), Gaps = 15/201 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +K DA K K+++ +G+E+ AVK+GGP+P +N+ L V+ KAK ++P D +E
Sbjct: 8 ANIKHKKEKNDAAKGKIFTVIGREIAVAVKEGGPDPANNSKLRDVIAKAKSNNMPNDTIE 67
Query: 141 RNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+A+ +++ YE YG G++I+VE LTD R+ A VR G +
Sbjct: 68 RGIKKAAGDANSVNYVQNTYEGYGPNGIAIIVETLTDNKNRTAANVRSAFSKGRGNIGTS 127
Query: 200 GSVMFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G V F F++ +V+ + + D D+ + +ALDAGAED +E EDD+ Y++
Sbjct: 128 GCVSFMFQKKGQIIVSKEEYETDPDEFMMVALDAGAEDFVE----EDDS--------YEI 175
Query: 258 VSTSDNYTDITTKLREAGIPF 278
+ D + ++ L + G+P
Sbjct: 176 TTDPDAFGEVREALEKEGVPM 196
>gi|451941155|ref|YP_007461793.1| hypothetical protein BAnh1_11370 [Bartonella australis Aust/NH1]
gi|451900542|gb|AGF75005.1| hypothetical protein BAnh1_11370 [Bartonella australis Aust/NH1]
Length = 248
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 83/240 (34%), Positives = 124/240 (51%), Gaps = 15/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++S++ +E+ A K+G P+P N L ++ AK +PKD +ER
Sbjct: 10 IMHRKGRQDAVRSKIFSKLAREITVAAKQGSPDPAMNPRLRLAVQNAKAQSMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+AS E + E YE YG GGV+I+VE LTD R+ + VR GG + + GSV
Sbjct: 70 IKKASGGDVEHYDEVRYEGYGPGGVAIIVEALTDNRNRTASNVRAAFTKSGGALGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R + K D ++D A++AGAEDV E + ++ +
Sbjct: 130 GFMFNRIGEIIYKPEAGTADSIMDAAIEAGAEDV------------QSEETGHHIICAFE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELN-KELIAKLLELDDVDAVYTD 321
+ +++ L + E+ N + TT+ DE L+ LIA L E DDV VY +
Sbjct: 178 DIGEVSKILEDTLGEAESIN--TVWKATTLAPVDEEKALSILRLIATLEEDDDVQNVYAN 235
>gi|401684171|ref|ZP_10816054.1| transcriptional regulator, YeeN [Streptococcus sp. BS35b]
gi|400186476|gb|EJO20688.1| transcriptional regulator, YeeN [Streptococcus sp. BS35b]
Length = 238
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 127/249 (51%), Gaps = 18/249 (7%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ A KKG P+P SNT L V+++AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGANSKVYAKFGVEIYVAAKKGEPDPESNTALKFVIDRAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A E F E YE +G G ++V+ LT + R+ A VR GG
Sbjct: 61 KHVIDKAIDKAKGNTDETFTEGRYEGFGPNGSMLIVDTLTSNVNRTAANVRAAFGKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
M GSV + F V I F D D + ++ L+A D D D E
Sbjct: 121 MGASGSVSYLFDNKGV--IVFAGDDADAIFELLLEA-------------DIDVDDVEAEE 165
Query: 256 KVVSTSDNYTDI---TTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLEL 312
++ TD+ LRE+G+ E++P + +E+ E +E+ ++L + L +
Sbjct: 166 GTITVYTAPTDLHKAIVALRESGVEEFQVTELEMIPQSEVELSGEDLEIFEKLYSVLEDD 225
Query: 313 DDVDAVYTD 321
+DV +YT+
Sbjct: 226 EDVQKIYTN 234
>gi|20807595|ref|NP_622766.1| hypothetical protein TTE1135 [Thermoanaerobacter tengcongensis MB4]
gi|20516134|gb|AAM24370.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis
MB4]
Length = 245
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 136/243 (55%), Gaps = 15/243 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +K DAKK ++++++ K++I A K+GG +P +N+ L +E+AK ++P +
Sbjct: 8 KWANIKHKKEKMDAKKGRIFTKLTKDIIKAAKEGGGDPETNSKLKLAIERAKAFNLPSEN 67
Query: 139 VERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
++R IKR + E G E +YE YG G +I+VE LTD R+ +R + GG +
Sbjct: 68 IQRAIKRGTGELGGAKLEEVIYEGYGPAGTAIIVEALTDNKNRTAGEIRHIFDRNGGTLG 127
Query: 198 DPGSVMFKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
GSV + F + V+ ++ TD+ +++ L+ +A++AGAED D E ++
Sbjct: 128 AAGSVTWMFDKVGVIVVEKTDSINEEDLMMVAIEAGAEDF----------SADEGE--FE 175
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
+++ N+ ++ + +AG ++ +LP TI++ E E ++LI KL + DDV
Sbjct: 176 IITDPSNFQEVREAIEKAGYKI-SEAEITMLPKNTIKLSPEDYEKFEKLIDKLEDNDDVQ 234
Query: 317 AVY 319
VY
Sbjct: 235 NVY 237
>gi|373957475|ref|ZP_09617435.1| UPF0082 protein yeeN [Mucilaginibacter paludis DSM 18603]
gi|373894075|gb|EHQ29972.1| UPF0082 protein yeeN [Mucilaginibacter paludis DSM 18603]
Length = 241
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 131/245 (53%), Gaps = 10/245 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR RK + AK A ++R+GKE++ AVK GGP+P +N+ L V++ +K +++P
Sbjct: 1 MGRAFEFRKERKFKRWAKMAIQFTRLGKEIVMAVKDGGPDPDTNSRLRTVIQNSKAVNMP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
KD V+ IKRAS K + + E VYE Y GV ++VE TD R+VA VR GG
Sbjct: 61 KDRVDAAIKRASNKDESNYEELVYEGYAPHGVPVLVETATDNTNRTVANVRSYFTKTGGS 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GS+ F F R + + D D ++L +DAG E++ + D+ D A
Sbjct: 121 LGKTGSLDFIFSRKSIFRFEPADHDLEELEFELIDAGLEELY---IETDENGHDIA---- 173
Query: 256 KVVSTS-DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDD 314
V T+ +++ + L E GI ++ + T +++A ++ K LI KL E DD
Sbjct: 174 -VAQTAFEDFGKMQKALEEKGIEVKSAKLERIAQSHTKVTEEQAADVMK-LIDKLEEDDD 231
Query: 315 VDAVY 319
V AVY
Sbjct: 232 VQAVY 236
>gi|154498059|ref|ZP_02036437.1| hypothetical protein BACCAP_02040 [Bacteroides capillosus ATCC
29799]
gi|150273049|gb|EDN00206.1| DNA-binding regulatory protein, YebC/PmpR family
[Pseudoflavonifractor capillosus ATCC 29799]
Length = 242
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 135/240 (56%), Gaps = 16/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGP-NPTSNTVLAAVLEKAKELDVPKDIVER 141
I KGA DAK++++++++ +E+I AVK GG +P +N+ LA V+ KAK ++P D ++R
Sbjct: 10 IQKTKGAADAKRSQIFTKIAREMIVAVKTGGSGDPANNSRLATVIAKAKAANMPNDNIKR 69
Query: 142 NIKRASEKGQ-EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
I +A G +++ VYE YG GV+++VE LTD R+ VR + GG + G
Sbjct: 70 TIDKALGSGNTDSYENVVYEGYGPCGVAVIVEALTDNRNRTAPFVRHIFDKYGGNLGATG 129
Query: 201 SVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
V + F + V+ I+ D D+D ++ ALDAGA+D+ +DD +++ ++
Sbjct: 130 CVSWSFDQKGVIVIEREDLDEDTVMMDALDAGADDMTA----DDDC--------FEITTS 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKE-LIAKLLELDDVDAVY 319
D + ++ KL E G F + E++P ++++ E N E LI L E DDV VY
Sbjct: 178 PDVFGEVLAKLEEKGYVFASAE-VEMVPQNYVKLESEDDVKNMEKLIDFLEENDDVQNVY 236
>gi|116511061|ref|YP_808277.1| hypothetical protein LACR_0237 [Lactococcus lactis subsp. cremoris
SK11]
gi|123125869|sp|Q032L7.1|Y237_LACLS RecName: Full=Probable transcriptional regulatory protein LACR_0237
gi|116106715|gb|ABJ71855.1| hypothetical protein LACR_0237 [Lactococcus lactis subsp. cremoris
SK11]
Length = 238
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 128/246 (52%), Gaps = 16/246 (6%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ +A K+G P+P SN+ L V+E+AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGATSKVYAKFGVEIYAAAKQGEPDPESNSSLKFVIERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A G E F++ YE +G G ++ E LT + R++A VR GG
Sbjct: 61 KHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMVIAETLTSNVNRTIANVRTTFHKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ G+V + F V I F D D + +I LDA E D + E
Sbjct: 121 IGAAGAVSYMFDNTGV--IVFEGTDPDHIFEILLDA-----------EVDVRDVTEEEGN 167
Query: 256 KVVST--SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELD 313
VV T +D + I L+ AGI + E++ + +E+ E +E+ + LI L + D
Sbjct: 168 IVVYTEPTDLHKGIAA-LKAAGITEFSTTELEMIAQSEVELSPEDLEIFEGLIDALEDDD 226
Query: 314 DVDAVY 319
DV VY
Sbjct: 227 DVQKVY 232
>gi|381165514|ref|ZP_09874744.1| DNA-binding regulatory protein, YebC/PmpR family [Saccharomonospora
azurea NA-128]
gi|418463641|ref|ZP_13034637.1| hypothetical protein SZMC14600_21778 [Saccharomonospora azurea SZMC
14600]
gi|359732124|gb|EHK81145.1| hypothetical protein SZMC14600_21778 [Saccharomonospora azurea SZMC
14600]
gi|379257419|gb|EHY91345.1| DNA-binding regulatory protein, YebC/PmpR family [Saccharomonospora
azurea NA-128]
Length = 249
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 127/238 (53%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++++ K + A + GG +P N L ++KAK+ VP+D +ER KR
Sbjct: 13 KKAALDAKRGKLFAKLIKNIEVAARTGGGDPEGNPTLYDAIQKAKKNSVPQDNIERARKR 72
Query: 146 ASEKGQEAFIEKV--YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
+ + + YE Y GGV++++E LTD R+ + VR + GG +ADPGSV
Sbjct: 73 GAGEEAGGAEWQTITYEGYAPGGVAVLIECLTDNKNRAASEVRTALSRNGGSLADPGSVS 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R VV + +D +L LDAGAE+V + N Y+++S + +
Sbjct: 133 YLFNRKGVVIMPKNGLSEDDVLMAVLDAGAEEVNDLGDN------------YEIISEAGD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ T L+EAG +E+ + S LP ++ +D E LI L + DDV VY++
Sbjct: 181 MVAVRTALQEAGYDYESADMS-FLPTVSVPLDAENARKVFRLIDALEDCDDVQNVYSN 237
>gi|432607804|ref|ZP_19843993.1| hypothetical protein A1U7_02808 [Escherichia coli KTE67]
gi|431138902|gb|ELE40714.1| hypothetical protein A1U7_02808 [Escherichia coli KTE67]
Length = 238
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 130/244 (53%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ +A K+G P+P NT L V+E+AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGATSKIYAKFGVEIYAAAKQGEPDPELNTSLKFVIERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A G E F++ YE +G G I+ E LT + R++A VR + GG
Sbjct: 61 KHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMIIAETLTSNVNRTIANVRTIFNKKGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV + F V+ K TD D + +I L+A DV D T+E+ Y
Sbjct: 121 IGAAGSVSYMFDNTGVIVFKGTDP--DHIFEILLEAEV-DV------RDVTEEEGNIVIY 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+D + I L+ AGI + E++ + +E+ E +E+ + L+ L + DDV
Sbjct: 172 --TEPTDLHKGIAA-LKAAGITEFSTTSLEMIAQSEVELSPEDLEIFEGLVDALEDDDDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QKVY 232
>gi|161486766|ref|NP_808127.2| hypothetical protein t4549 [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|161501900|ref|NP_458924.2| hypothetical protein STY4855 [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|213428365|ref|ZP_03361115.1| hypothetical protein SentesTyphi_24164 [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213580746|ref|ZP_03362572.1| hypothetical protein SentesTyph_05827 [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
gi|213622739|ref|ZP_03375522.1| hypothetical protein SentesTyp_36613 [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
gi|213648419|ref|ZP_03378472.1| hypothetical protein SentesTy_14719 [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|213854853|ref|ZP_03383093.1| hypothetical protein SentesT_12500 [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|289827418|ref|ZP_06546030.1| hypothetical protein Salmonellentericaenterica_16802 [Salmonella
enterica subsp. enterica serovar Typhi str. E98-3139]
gi|378962724|ref|YP_005220210.1| hypothetical protein STBHUCCB_47960 [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
gi|49066049|sp|Q8Z0Y7.2|YEEN_SALTI RecName: Full=Probable transcriptional regulatory protein YeeN
gi|374356596|gb|AEZ48357.1| hypothetical protein STBHUCCB_47960 [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
Length = 238
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 131/244 (53%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ +A K+G P+P SN+ L V+E+AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGATSKVYAKFGVEIYAAAKQGEPDPESNSALKFVIERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A G E F++ YE +G G ++ E LT + R++A +R + GG
Sbjct: 61 KHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMVIAETLTSNVNRTIANIRTIFNKKGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ G+V + F V+ K TD D + +I LDA DV D T+E+ Y
Sbjct: 121 IGAAGAVSYMFDNTGVIVFKGTDP--DHIFEILLDAEV-DV------RDVTEEEGNIVIY 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+D + I L+ AGI + E++ + +E+ E +E+ + L+ L + DDV
Sbjct: 172 --TEATDLHKGIAA-LKAAGITEFSTTELEMIAQSDVELSPEDLEIFEGLVDALEDDDDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QKVY 232
>gi|295134428|ref|YP_003585104.1| hypothetical protein ZPR_2585 [Zunongwangia profunda SM-A87]
gi|294982443|gb|ADF52908.1| conserved hypothetical protein [Zunongwangia profunda SM-A87]
Length = 241
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 127/244 (52%), Gaps = 13/244 (5%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR RK + + AK ++R+GK+++ AVK+GGP+P +N+ L AV++ AK +++P
Sbjct: 1 MGRAFEFRKARKMKRWSAMAKAFTRIGKDIVMAVKEGGPDPDANSKLRAVIQNAKSVNMP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
KD +ER IKRAS+K Q + ++E Y G++++VE TD R+VA VR C G
Sbjct: 61 KDNIERAIKRASDKSQGDYKIVLFEGYAPHGIAVLVETATDNNNRTVANVRSYFNKCDGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV F F I D ++L +D GAE+V E DED Y
Sbjct: 121 LGTSGSVEFMFDHTCNFRINAKGLDVEELELEFIDYGAEEVFE--------DEDGIHIY- 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+ + + I +L I +G E +P T ++ E ++L+ KL E DDV
Sbjct: 172 ---APFEYFGSIQKELESKNIEI-ISSGFERIPQVTKQLTPEQSADVEKLLEKLEEDDDV 227
Query: 316 DAVY 319
VY
Sbjct: 228 QNVY 231
>gi|418721584|ref|ZP_13280760.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
borgpetersenii str. UI 09149]
gi|410741937|gb|EKQ90688.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
borgpetersenii str. UI 09149]
Length = 249
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 133/237 (56%), Gaps = 13/237 (5%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A D+K+ +++R+GKE+ A K GG +P N L + KAK +++PKD +ER IK+
Sbjct: 13 KKDAIDSKRGAIFTRVGKEITVAAKMGGGDPEGNPRLRLAILKAKSVNMPKDNIERAIKK 72
Query: 146 ASEKGQEAFIEK-VYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMF 204
+ + + E+ +YE +G G++I+V +TDK +R+ ++ ++ GG +A GSV
Sbjct: 73 GTGELEGVVYEECLYECFGPAGIAIMVSAVTDKKSRTTPEIKSILTKLGGSLATSGSVSR 132
Query: 205 KFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNY 264
F + V+ ++ + +D+L+DIA+ GAEDVI NE + Y+V++T D+Y
Sbjct: 133 LFEKKGVIVLESSQIGEDKLVDIAVGGGAEDVI----NEGEV--------YRVITTPDDY 180
Query: 265 TDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ L E G+ E + +++ D E E +LI +L DDV +V ++
Sbjct: 181 ESVLHALNEKGLKSEESEIRYIALVSSEIADKEVAEKVMKLIEQLDGHDDVTSVTSN 237
>gi|432862178|ref|ZP_20086863.1| hypothetical protein A311_02600 [Escherichia coli KTE146]
gi|431405397|gb|ELG88639.1| hypothetical protein A311_02600 [Escherichia coli KTE146]
Length = 238
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 131/244 (53%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ +A K+G P+P NT L V+E+AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGATSKIYAKFGVEIYAAAKQGEPDPELNTSLKFVIERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A G E F++ YE +G G I+ E LT + R++A VR + GG
Sbjct: 61 KHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMIIAETLTSNVNRTIANVRTIFNKKGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV + F V+ K TD+ D + +I L+A DV D T+E+ Y
Sbjct: 121 IGAAGSVSYMFDNTGVIVFKGTDS--DHIFEILLEAEV-DV------RDVTEEEGNIVIY 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+D + I L+ AGI + E++ + +E+ E +E+ + L+ L + DDV
Sbjct: 172 --TEPTDLHKGIAA-LKAAGITEFSTTELEMIAQSEVELSPEDLEIFEGLVDALEDDDDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QKVY 232
>gi|396584018|ref|ZP_10484520.1| DNA-binding regulatory protein, YebC/PmpR family [Actinomyces sp.
ICM47]
gi|395548443|gb|EJG15706.1| DNA-binding regulatory protein, YebC/PmpR family [Actinomyces sp.
ICM47]
Length = 253
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 133/240 (55%), Gaps = 18/240 (7%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++R+ K + A + GG +P N L ++KAK+ VP D ++R +KR
Sbjct: 13 KKAAIDAKRGKLFARLIKNIEVAARTGGGDPAGNPTLYDAIQKAKKNSVPADNIDRAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S E G + +YE YG GV+ +VE LTD R+ + VR GG +ADPGSV
Sbjct: 73 GSGAEAGGANYETIMYEGYGPNGVAFLVECLTDNRNRAASDVRLGFTRHGGSLADPGSVS 132
Query: 204 FKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
+ F R VV + D D++ ++ LDAGAE+V ED D + + S
Sbjct: 133 YLFSRRGVVEVPAADGVDEESIMMAVLDAGAEEV------EDAGD------LFVIESDPK 180
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDE-AMELNKELIAKLLELDDVDAVYTD 321
+ + T L+EAGI +++ + + T +E+D E A+++NK LI L + DDV +YT+
Sbjct: 181 DVVAVRTALQEAGIDYDSAE-VQFVASTEVELDLEGALKVNK-LIDVLEDSDDVQNIYTN 238
>gi|417926100|ref|ZP_12569511.1| DNA-binding regulatory protein, YebC/PmpR family [Finegoldia magna
SY403409CC001050417]
gi|341590321|gb|EGS33565.1| DNA-binding regulatory protein, YebC/PmpR family [Finegoldia magna
SY403409CC001050417]
Length = 241
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 138/243 (56%), Gaps = 21/243 (8%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
SKI +KG++DA++ K++++M + + AV++GG +P N L +V+EKA+ ++P D ++
Sbjct: 8 SKIKNKKGSEDARRGKVFTKMARAITVAVREGGADPEYNPSLKSVIEKARAENMPNDNID 67
Query: 141 RNIKRASEKGQEAFIEK-VYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+AS G A E VYE YG GV+++VE LTD R+ + VR GG +
Sbjct: 68 RAIKKASGDGDSANYENIVYEGYGPEGVAVIVECLTDNRNRTASDVRHYFDKFGGNLGQN 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV F F+R ++ I D+++++ +LDAGAED A+ V++
Sbjct: 128 GSVSFMFQRKGLLLIDADSLDEEEVMMDSLDAGAEDF-------------EADDGIFVIN 174
Query: 260 TS-DNYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEA-MELNKELIAKLLELDDV 315
T+ +++ + L E G F S+L+ P ++++DE+ ++ ++LI L + DDV
Sbjct: 175 TAMEDFAQVRDTLLEKGYKFVK---SDLVYEPSNYVKINDESNVDKMEKLIDNLEDSDDV 231
Query: 316 DAV 318
V
Sbjct: 232 QQV 234
>gi|423315669|ref|ZP_17293574.1| YebC/PmpR family DNA-binding regulatory protein [Bergeyella
zoohelcum ATCC 43767]
gi|405585773|gb|EKB59576.1| YebC/PmpR family DNA-binding regulatory protein [Bergeyella
zoohelcum ATCC 43767]
Length = 246
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 129/248 (52%), Gaps = 19/248 (7%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR K A+ K AK +SR+GK++ AVK GGP+P SN L ++ AK ++P
Sbjct: 1 MGRAFEYRKASKMARWDKMAKTFSRIGKDIAIAVKAGGPDPESNPALRRCIQNAKGANMP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
KD VER IK+AS E + E YE YG GGV+ VE T+ TR+VA VR + G
Sbjct: 61 KDNVERAIKKASGADAEQYDEITYEGYGQGGVAFFVECTTNNPTRTVANVRAIFNKMDGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTD--ADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAER 253
+ G + F F R + + + D ++ +D GAE++ DTDE+
Sbjct: 121 LGKNGELAFIFDRKGIFTLDKSSITMDWEEFEMEMIDGGAEEI--------DTDENEV-- 170
Query: 254 YYKVVSTSDNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLE 311
V + +++ ++ KL + GI ++ +EL +P T EV +E + N +++ K E
Sbjct: 171 --MVTTAFEDFGALSHKLEKLGIEAKS---AELQRIPNMTKEVTEEQFKNNMKMLEKFEE 225
Query: 312 LDDVDAVY 319
DDV VY
Sbjct: 226 DDDVQNVY 233
>gi|118581084|ref|YP_902334.1| hypothetical protein Ppro_2673 [Pelobacter propionicus DSM 2379]
gi|166228423|sp|A1ASF6.1|Y2673_PELPD RecName: Full=Probable transcriptional regulatory protein Ppro_2673
gi|118503794|gb|ABL00277.1| protein of unknown function DUF28 [Pelobacter propionicus DSM 2379]
Length = 247
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 134/243 (55%), Gaps = 17/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
S I +KGA DAK+ K+++++ KE+ A K GG +P +N L ++KAK ++PKD +E
Sbjct: 8 STIKHKKGAADAKRGKVFTKLIKEISVAAKLGGGDPAANPRLRTAVDKAKAENMPKDNIE 67
Query: 141 RNIKRASEKGQEA--FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMAD 198
R IK+ + G E + E VYE YG GG +++VEV+TD RSV+ +R + G M +
Sbjct: 68 RAIKKGA-GGMEGVTYEEIVYEGYGPGGAAVLVEVMTDNRNRSVSEIRSIFTKANGNMGE 126
Query: 199 PGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
G V + F + ++ D +QL + A++AGAEDV E ED+ ++V
Sbjct: 127 AGCVAWMFSKKGLITFD-KGLDFEQLFEAAIEAGAEDVSE----EDEQ--------FEVT 173
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+ ++ ++ L G F + ++P T + ++ + E +L+ KL + DDV V
Sbjct: 174 TDPSSFIEVREALVAKGFSFANAEVT-MIPQTMVALEGKQAESMLKLMDKLEDNDDVQNV 232
Query: 319 YTD 321
Y++
Sbjct: 233 YSN 235
>gi|432564212|ref|ZP_19800800.1| hypothetical protein A1SA_02854 [Escherichia coli KTE51]
gi|431094205|gb|ELD99852.1| hypothetical protein A1SA_02854 [Escherichia coli KTE51]
Length = 238
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 130/244 (53%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ +A K+G P+P NT L V+E+AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGATSKIYAKFGVEIYAAAKQGEPDPELNTSLKFVIERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A G E F++ YE +G G I+ E LT + R++A VR + GG
Sbjct: 61 KHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMIIAETLTSNVNRTIANVRTIFNKKGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV + F V I F +D D + +I L+A DV D T+E+ Y
Sbjct: 121 IGTAGSVSYMFDNTGV--IVFKGSDPDHIFEILLEAEV-DV------RDVTEEEGNIVIY 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+D + I L+ AGI + E++ + +E+ E +E+ + L+ L + DDV
Sbjct: 172 --TEPTDLHKGIAA-LKAAGITEFSTTELEMIAQSEVELSPEDLEIFEGLVDALEDDDDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QKVY 232
>gi|294669541|ref|ZP_06734608.1| hypothetical protein NEIELOOT_01440 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291308454|gb|EFE49697.1| hypothetical protein NEIELOOT_01440 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 241
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 132/245 (53%), Gaps = 17/245 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +K DA++ K+++R+ KE+ A + GG +P +N L ++KA ++PKD V+
Sbjct: 8 ANIQHKKARADAQRGKIFTRLIKEITVAARLGGGDPGANPRLRLAMDKAAASNMPKDNVQ 67
Query: 141 RNIKRASE--KGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMAD 198
R I + + +G E +IE YE YG GG +++V+ +TD TR+VA VR GG +
Sbjct: 68 RAIDKGTGNLEGVE-YIELRYEGYGIGGAALMVDCMTDNKTRTVADVRHAFNKNGGNLGT 126
Query: 199 PGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
G V F F + FT D+D L++ AL+AGAEDVI DE E +V+
Sbjct: 127 DGCVAFNFVHQGY--LVFTGVDEDALMEAALEAGAEDVI--------ADE---EGIIEVI 173
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+ ++ ++ KL AG E + + T+ D+A+++ K LI L LDDV V
Sbjct: 174 TAPADWAEVKAKLEAAGFKSEDGDVTMRAQNETVLSGDDAVKMQK-LIDALEALDDVQNV 232
Query: 319 YTDQI 323
YT +
Sbjct: 233 YTSAV 237
>gi|349701029|ref|ZP_08902658.1| hypothetical protein GeurL1_09531 [Gluconacetobacter europaeus LMG
18494]
Length = 249
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 129/246 (52%), Gaps = 26/246 (10%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKGAQDAK+AK ++++ +E+ A ++G P+P N L A + A+E+++PKD VER
Sbjct: 10 IMHRKGAQDAKRAKQFAKVIREITVATREGMPDPAMNPRLRAAISAAREVNMPKDTVERA 69
Query: 143 IKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+AS G + + E YE YG GV+++VE LTD R+ + VR GG + + S
Sbjct: 70 IKKASGAGGGDDYTEVRYEGYGPAGVAVIVEGLTDNRNRTASDVRAAFSKHGGSLGETNS 129
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
V F F R V+ A +D L++ L+AGAE+V + + ++V
Sbjct: 130 VSFMFTRLGVITYPLDAASEDDLIEAGLEAGAENV------------ETVDGMHEVTCPV 177
Query: 262 DNYTDITTKLREAGIPFETDNGS------ELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+++ + L ET G + P T+E+D++ +LI L + DDV
Sbjct: 178 ESFFAVRDAL-------ETRFGEPASARLDWRPSNTVELDEDKARSVFKLIDTLEDHDDV 230
Query: 316 DAVYTD 321
AVY +
Sbjct: 231 QAVYAN 236
>gi|193212194|ref|YP_001998147.1| hypothetical protein Cpar_0525 [Chlorobaculum parvum NCIB 8327]
gi|226707685|sp|B3QLZ4.1|Y525_CHLP8 RecName: Full=Probable transcriptional regulatory protein Cpar_0525
gi|193085671|gb|ACF10947.1| protein of unknown function DUF28 [Chlorobaculum parvum NCIB 8327]
Length = 251
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 129/240 (53%), Gaps = 13/240 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I +K A D K+ L++++ KE+ A K GG +P+ N L ++ A+ +P D ++R
Sbjct: 10 IKRKKAATDQKRGNLFTKLVKEITIAAKMGGGDPSGNPRLRLAIDTARANSMPMDNIQRA 69
Query: 143 IKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+ + + + A E++ YE YG GG++I++E TD R+VA +R ++ GG + + GS
Sbjct: 70 IKKGTGELEGATYEEITYEGYGPGGIAIIIETATDNRNRTVADIRHLMSRSGGSLGENGS 129
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
V + F R + + + +D L+++ LDAG E++ E E+YY V++
Sbjct: 130 VGWMFNRKGSIEVPKSAISEDDLMELLLDAGLEEL-----------ESDDEQYYTVLTDV 178
Query: 262 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ + L EA IPFE +++P +E+D E +LI L DD AVY++
Sbjct: 179 KDLEPVKKALEEAEIPFENAK-MDMIPDNYVELDVEDARKALKLIDALENSDDAQAVYSN 237
>gi|126739230|ref|ZP_01754924.1| hypothetical protein RSK20926_22559 [Roseobacter sp. SK209-2-6]
gi|126719847|gb|EBA16555.1| hypothetical protein RSK20926_22559 [Roseobacter sp. SK209-2-6]
Length = 246
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 128/247 (51%), Gaps = 25/247 (10%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKG QDA ++KL+S++ KE+ A K G P+P N L +++AK VPKD++E
Sbjct: 8 ANIQHRKGRQDAARSKLFSKLAKEITVAAKMGDPDPEKNPRLRLAVKEAKSQSVPKDVIE 67
Query: 141 RNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
R IK+A E + E YE YG GV+++VE +TD R+ + VR GG + + G
Sbjct: 68 RAIKKAIGGDAENYDEIRYEGYGPSGVAVIVETMTDNKNRTASTVRSTFSKNGGNLGETG 127
Query: 201 SVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
SV F F R V+ + D D ++ A++AGAEDV + DD ++
Sbjct: 128 SVGFMFDRKGEVSYPASVGDADTVMMAAIEAGAEDV----ESSDDG---------HIIYC 174
Query: 261 SDNYTDITTKLREAGIPFETDNG----SELL--PITTIEVDDEAMELNKELIAKLLELDD 314
D T L E E + G ++L+ P TT E+D E M+ +L+ L + DD
Sbjct: 175 ED------TDLNEVSNALEAELGESESTKLIWKPTTTTELDLEGMQKLMKLVDALEDDDD 228
Query: 315 VDAVYTD 321
V V T+
Sbjct: 229 VQRVTTN 235
>gi|16799465|ref|NP_469733.1| hypothetical protein lin0388 [Listeria innocua Clip11262]
gi|47096700|ref|ZP_00234286.1| conserved hypothetical protein TIGR01033 [Listeria monocytogenes
str. 1/2a F6854]
gi|217965541|ref|YP_002351219.1| hypothetical protein LMHCC_2267 [Listeria monocytogenes HCC23]
gi|226222996|ref|YP_002757103.1| hypothetical protein Lm4b_00388 [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|254825825|ref|ZP_05230826.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
gi|254913615|ref|ZP_05263627.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|254938054|ref|ZP_05269751.1| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|254992305|ref|ZP_05274495.1| hypothetical protein LmonocytoFSL_03924 [Listeria monocytogenes FSL
J2-064]
gi|255520965|ref|ZP_05388202.1| hypothetical protein LmonocFSL_07041 [Listeria monocytogenes FSL
J1-175]
gi|290892477|ref|ZP_06555471.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
gi|386007095|ref|YP_005925373.1| hypothetical protein lmo4a_0382 [Listeria monocytogenes L99]
gi|386025683|ref|YP_005946459.1| hypothetical protein LMM7_0395 [Listeria monocytogenes M7]
gi|386046030|ref|YP_005964362.1| hypothetical protein [Listeria monocytogenes J0161]
gi|386731129|ref|YP_006204625.1| hypothetical protein MUO_02020 [Listeria monocytogenes 07PF0776]
gi|404406834|ref|YP_006689549.1| hypothetical protein LMOSLCC2376_0351 [Listeria monocytogenes
SLCC2376]
gi|405754462|ref|YP_006677926.1| hypothetical protein LMOSLCC2540_0383 [Listeria monocytogenes
SLCC2540]
gi|406703144|ref|YP_006753498.1| hypothetical protein LMOL312_0369 [Listeria monocytogenes L312]
gi|422414817|ref|ZP_16491774.1| hypothetical protein NT06LI_0478 [Listeria innocua FSL J1-023]
gi|422808476|ref|ZP_16856887.1| hypothetical protein LMIV_0132 [Listeria monocytogenes FSL J1-208]
gi|423099432|ref|ZP_17087139.1| DNA-binding regulatory protein, YebC/PmpR family [Listeria innocua
ATCC 33091]
gi|33517084|sp|Q92ES0.1|Y388_LISIN RecName: Full=Probable transcriptional regulatory protein lin0388
gi|16412817|emb|CAC95621.1| lin0388 [Listeria innocua Clip11262]
gi|47014954|gb|EAL05901.1| conserved hypothetical protein TIGR01033 [Listeria monocytogenes
str. 1/2a F6854]
gi|217334811|gb|ACK40605.1| conserved hypothetical protein [Listeria monocytogenes HCC23]
gi|225875458|emb|CAS04155.1| Unknown [Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|258610667|gb|EEW23275.1| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|290558043|gb|EFD91563.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
gi|293591627|gb|EFF99961.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|293595064|gb|EFG02825.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
gi|307569905|emb|CAR83084.1| conserved hypothetical protein [Listeria monocytogenes L99]
gi|313625184|gb|EFR95035.1| hypothetical protein NT06LI_0478 [Listeria innocua FSL J1-023]
gi|336022264|gb|AEH91401.1| hypothetical protein LMM7_0395 [Listeria monocytogenes M7]
gi|345533021|gb|AEO02462.1| hypothetical protein LMOG_02712 [Listeria monocytogenes J0161]
gi|370794056|gb|EHN61846.1| DNA-binding regulatory protein, YebC/PmpR family [Listeria innocua
ATCC 33091]
gi|378753510|gb|EHY64094.1| hypothetical protein LMIV_0132 [Listeria monocytogenes FSL J1-208]
gi|384389887|gb|AFH78957.1| hypothetical protein MUO_02020 [Listeria monocytogenes 07PF0776]
gi|404223662|emb|CBY75024.1| hypothetical protein LMOSLCC2540_0383 [Listeria monocytogenes
SLCC2540]
gi|404240983|emb|CBY62383.1| hypothetical protein LMOSLCC2376_0351 [Listeria monocytogenes
SLCC2376]
gi|406360174|emb|CBY66447.1| hypothetical protein LMOL312_0369 [Listeria monocytogenes L312]
Length = 239
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 131/244 (53%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K ++D +++Y++ G E+ A K G P+P SN L V+E+AK +VP
Sbjct: 1 MGRKWANIKEKKASKDKTNSRIYAKFGIEIYVAAKSGDPDPHSNQKLRFVIERAKTYNVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K I++R I++A G E + E YE +G G I+V+ LT+ + R+ + VR GG
Sbjct: 61 KHIIDRAIEKAKGTGDETYSELRYEGFGPNGSMIIVDALTNNVNRTASDVRAAYSKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
M GSV + F + ++ DA D+LL++ ++A DV D DED Y
Sbjct: 121 MGVSGSVAYMFDNTAIFGVEGKDA--DELLELLMEADI-DV------RDILDEDGQAIIY 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+ +++ + L+ AGI T E++P I++ E +E ++LI L +L+DV
Sbjct: 172 ---AEPEDFHKVQEGLKAAGIEEFTVAEIEMIPQNDIQLSGEDLEKFEKLIDALEDLEDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QKVY 232
>gi|386829381|ref|ZP_10116488.1| DNA-binding regulatory protein, YebC/PmpR family [Beggiatoa alba
B18LD]
gi|386430265|gb|EIJ44093.1| DNA-binding regulatory protein, YebC/PmpR family [Beggiatoa alba
B18LD]
Length = 248
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 104/167 (62%), Gaps = 5/167 (2%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKGAQDAK+AK++++ +E+ A + GG +P +N L ++KA ++PKD +E
Sbjct: 8 ANIQHRKGAQDAKRAKVFTKFIREITVAARMGGGDPNANPRLRLAVDKALTANMPKDTIE 67
Query: 141 RNIKRASEKGQ-EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IKR + + E + E YE YG GG++++V+ +TD R+V+ VR CGG +
Sbjct: 68 RAIKRGAGAAEGENYEEVRYEGYGAGGIAVIVDCMTDNRNRTVSEVRHAFSKCGGNLGTD 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDT 246
GSV F F ++ +D+D+L++ AL+AGA+DV++ NED +
Sbjct: 128 GSVAFMFEEIGLLTYP-AGSDEDKLMEAALEAGAQDVVK---NEDSS 170
>gi|319780992|ref|YP_004140468.1| hypothetical protein [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317166880|gb|ADV10418.1| protein of unknown function DUF28 [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 249
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 127/241 (52%), Gaps = 17/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++S++ +E+ A K G P+P+ N L ++ AK + +PKD ++R
Sbjct: 10 IMHRKGRQDAVRSKMFSKLAREITVAAKSGTPDPSMNPRLRLAIQNAKAVSMPKDNIQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
+ +AS E + YE YG GGV+++VE LTD RS + VR GG M + GSV
Sbjct: 70 VNKASMGDAENYEAVRYEGYGPGGVAVIVEALTDNRNRSASNVRAAFTKAGGAMGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F + R + + D++++ A++AGA+DV +TDE+ Y + +
Sbjct: 130 SFMWDRVGEIYYPASAGSADKVMEAAIEAGADDV--------ETDEEGHTIYCAFENLGE 181
Query: 263 NYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
+ T L EA +L+ P + VD+E + +L+A L + DDV +VY
Sbjct: 182 VSKALETSLGEA-------ESVKLIWRPQNNVPVDEERAQSLMKLVATLEDDDDVQSVYA 234
Query: 321 D 321
+
Sbjct: 235 N 235
>gi|452943699|ref|YP_007499864.1| DNA-binding regulatory protein, YebC/PmpR family [Hydrogenobaculum
sp. HO]
gi|452882117|gb|AGG14821.1| DNA-binding regulatory protein, YebC/PmpR family [Hydrogenobaculum
sp. HO]
Length = 249
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 131/239 (54%), Gaps = 16/239 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
++I +K DA+K KL+ ++ +E+ A K GGP+P +N L +E A+++ +P D +E
Sbjct: 8 AQIKHKKAKVDAQKGKLFGKLIREITVATKLGGPDPNANPRLRMAIEAARKVSMPMDTIE 67
Query: 141 RNIKRASEKGQEAFIEK-VYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
+ IKR S +E +E+ VYE YG GG +I+V V TD ++ + VR GG +
Sbjct: 68 KAIKRGSGNDKEGALEEIVYEGYGPGGTAIMVVVATDNRNKATSEVRHAFSKHGGNLGSS 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
G V + F + V+ I D+++L++ AL+AGA+DV +T ED + +
Sbjct: 128 GCVSYLFEQKGVIEIPKESTDEEKLMEAALEAGADDV--------ETTED---MFIVYTN 176
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
D YT + L G E+ S L+P TT+E+ D ++ K+L+ L LD++D V
Sbjct: 177 PKDVYT-VKDILASKGFAIESAKTS-LIPTTTVEIKD--IDTAKKLLNLLEHLDELDEV 231
>gi|424834769|ref|ZP_18259464.1| hypothetical protein IYC_13379 [Clostridium sporogenes PA 3679]
gi|365978454|gb|EHN14532.1| hypothetical protein IYC_13379 [Clostridium sporogenes PA 3679]
Length = 246
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 122/217 (56%), Gaps = 15/217 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I +KG DAK+ K+++++GKE++ AVK+GGP+ SN L V+ KAK ++P D +ER+
Sbjct: 10 IQAKKGKVDAKRGKIFTKIGKEIVVAVKQGGPSADSNPRLRDVIAKAKANNMPNDTIERS 69
Query: 143 IKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+AS + E + YE YG G++++V+VLTD RS VR GG M G
Sbjct: 70 IKKASGELNAVDYETITYEGYGPAGIAVLVDVLTDNKNRSAGNVRYAFTKQGGNMGSTGC 129
Query: 202 VMFKFR-RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
V F F+ + ++V K D+D+L+ +ALDAGAED + + Y V ++
Sbjct: 130 VSFMFQSKGQIVIEKKDGLDEDELMMMALDAGAEDF------------ESEDEVYVVTTS 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDE 297
+++ + L G+ F + +++P T +D+E
Sbjct: 178 QEDFGTVRETLEGEGLEF-LEAEVKMVPDTYTAIDEE 213
>gi|308172568|ref|YP_003919273.1| hypothetical protein BAMF_0677 [Bacillus amyloliquefaciens DSM 7]
gi|307605432|emb|CBI41803.1| conserved hypothetical protein [Bacillus amyloliquefaciens DSM 7]
Length = 239
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K ++DA +++Y++ G+E+ A ++G P+P SN L VLE+AK VP
Sbjct: 1 MGRKWNNIKEKKASKDANTSRIYAKFGREIYVAAQQGEPDPESNQALKVVLERAKTYSVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K+I+ER I++A +E F E YE +G G I+V+ LT+ + R+ VR GG
Sbjct: 61 KNIIERAIEKAKGGAEENFDELRYEGFGPNGSMIIVDALTNNVNRTAPEVRAAFGKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
M GSV + F V+ ++ AD+ L + D D++E EDD+
Sbjct: 121 MGVSGSVAYMFDATAVIGVEGKTADEALELLMEADVDVRDILE----EDDS--------V 168
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
V + D + + + AG+ T +L IE+ ++A ++LI L +L+DV
Sbjct: 169 IVYAEPDQFHAVQEAFKNAGVEEFTVAELTMLAQNEIELPEDAKAQFEKLIDVLEDLEDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QQVY 232
>gi|431932849|ref|YP_007245895.1| YebC/PmpR family DNA-binding regulatory protein [Thioflavicoccus
mobilis 8321]
gi|431831152|gb|AGA92265.1| DNA-binding regulatory protein, YebC/PmpR family [Thioflavicoccus
mobilis 8321]
Length = 249
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 134/244 (54%), Gaps = 22/244 (9%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQD ++ K+++++ +EV A ++GG +P +N L ++KA ++P+D VE
Sbjct: 8 ANIKHRKAAQDKQRGKVWTKLIREVTVAAREGGGDPNANPRLRLAMDKAFGANMPRDTVE 67
Query: 141 RNIKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R +KR A + E + E YE YG GG +++V+ +TD R+ A VR GG +
Sbjct: 68 RAVKRGAGDTEGENYEELRYEGYGPGGTAVMVDCMTDNRNRTAAEVRHAFTKYGGNLGTD 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F + +++ + D+D +++ AL+AGAEDVI VN+D + V++
Sbjct: 128 GSVAYLFTKQGIISFQ-PGTDEDTVIEAALEAGAEDVI---VNDDSS--------LDVIT 175
Query: 260 TSDNYTDITTKLREAGIPFE----TDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
T +++ + L AG+ E T N S T E+D E E +L+ L +LDDV
Sbjct: 176 TPEDFAAVKDALTTAGLDTEAAEVTFNAS-----TQAELDAETAERLLKLVDALEDLDDV 230
Query: 316 DAVY 319
VY
Sbjct: 231 QEVY 234
>gi|430749663|ref|YP_007212571.1| YebC/PmpR family DNA-binding regulatory protein [Thermobacillus
composti KWC4]
gi|430733628|gb|AGA57573.1| DNA-binding regulatory protein, YebC/PmpR family [Thermobacillus
composti KWC4]
Length = 248
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 130/238 (54%), Gaps = 21/238 (8%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
RKG D + + ++ +E+ ++GGP P +N L + A+ +P + +ER IKR
Sbjct: 10 RKGKADQARNNKFVKLAREIYMHARRGGPYPEANLALKNAIANARAEQMPIENIERAIKR 69
Query: 146 ASEK-GQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMF 204
A+ G E + E +YE YG GGV+I+V+ LTD R+ A VR + GG M + G V +
Sbjct: 70 ATATAGGEDYEEIIYEGYGPGGVAIMVKCLTDNRNRTAADVRAIFNKRGGNMGESGCVSY 129
Query: 205 KF--RRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F + VV+ + D D+D +L A+DAGAED+I VNED Y++++
Sbjct: 130 LFDEKGLLVVSREAHDIDEDSMLMAAIDAGAEDII---VNED---------LYEILTAPA 177
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLE-LDDVDAVY 319
++ + L +G+ FE+ G LP TT++V+ E N E + K+++ DD D V+
Sbjct: 178 DFIKVKQALEGSGLTFES-AGIRWLPRTTVKVEGE----NAEKLLKMMDAFDDNDDVH 230
>gi|119896865|ref|YP_932078.1| hypothetical protein azo0574 [Azoarcus sp. BH72]
gi|166229070|sp|A1K2Y6.1|Y574_AZOSB RecName: Full=Probable transcriptional regulatory protein azo0574
gi|119669278|emb|CAL93191.1| conserved hypothetical protein [Azoarcus sp. BH72]
Length = 241
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 128/245 (52%), Gaps = 16/245 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKG QDAK+ K+++++ KEV A K GG +P +N L ++KAK +PKD +E
Sbjct: 8 ANIQHRKGRQDAKRGKVFTKLIKEVTVAAKMGGGDPNANPRLRLAIDKAKAESMPKDNIE 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
IKR + + + E+ YE YG G +++V+ LTD TR+VA VR GG M
Sbjct: 68 NAIKRGTGQLEGVTYEEARYEGYGIAGAAVMVDCLTDNKTRTVADVRHAFSKYGGNMGTD 127
Query: 200 GSVMFKFRRARVVNIKFT-DADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
G V F+F+ + F D+D L++ AL+AGAEDV+ N+D + E V+
Sbjct: 128 GCVAFQFKHCG--QLMFAPGTDEDALMEAALEAGAEDVV---ANDDGSIE--------VI 174
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+ +T + L +AG E + T D+A + K L+ L LDDV V
Sbjct: 175 TGPWEFTTVKETLEKAGFTAEFGEVTMKAQNETELSGDDAARMQK-LLDALESLDDVQEV 233
Query: 319 YTDQI 323
YT +
Sbjct: 234 YTSAV 238
>gi|392429150|ref|YP_006470161.1| hypothetical protein SCIM_1259 [Streptococcus intermedius JTH08]
gi|419776131|ref|ZP_14302054.1| transcriptional regulator, YeeN [Streptococcus intermedius SK54]
gi|383846339|gb|EID83738.1| transcriptional regulator, YeeN [Streptococcus intermedius SK54]
gi|391758296|dbj|BAM23913.1| conserved hypothetical protein [Streptococcus intermedius JTH08]
Length = 238
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 126/249 (50%), Gaps = 18/249 (7%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ A KKG P+P SN+ L V+E+AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGANSKVYAKFGVEIYVAAKKGEPDPESNSALKFVIERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K I+++ + +A E F E YE +G G ++V+ LT + R+ A VR GG
Sbjct: 61 KHIIDKALDKAKGNTDETFTEGRYEGFGPNGSMLIVDTLTSNVNRTAANVRSAFGKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
M GSV + F V I FT D D + + L+A D D D E
Sbjct: 121 MGASGSVSYMFDNKGV--IVFTGDDADSVFEQLLEA-------------DVDVDDVEAED 165
Query: 256 KVVSTSDNYTDI---TTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLEL 312
++ TD+ T LRE+G+ E++P + + + E +E ++L A L +
Sbjct: 166 GTITVYTAPTDLHKALTALRESGVEEFQVTELEMIPQSDVTLSGEDLETFEKLYAVLEDD 225
Query: 313 DDVDAVYTD 321
+DV +YT+
Sbjct: 226 EDVQKIYTN 234
>gi|298529994|ref|ZP_07017396.1| protein of unknown function DUF28 [Desulfonatronospira
thiodismutans ASO3-1]
gi|298509368|gb|EFI33272.1| protein of unknown function DUF28 [Desulfonatronospira
thiodismutans ASO3-1]
Length = 249
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 121/216 (56%), Gaps = 14/216 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDAKK K+++++ KE++ A + GG P N L A ++ AK ++PKD +E
Sbjct: 10 IQHRKGRQDAKKGKIFTKVTKEIMLAARDGGGEPDKNPRLRAAIDSAKSANLPKDKIETA 69
Query: 143 IKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+ + E + E V E YG GGV+++V++ TD R+VA VR ++ GG M + G
Sbjct: 70 IKKGTGELAADQIEESVCEGYGPGGVAMLVQIATDNKNRTVAEVRHLLSKNGGSMGESGC 129
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
V + F V++ ++QLL++ L+AGAED+I DD + ++V
Sbjct: 130 VAWMFDHKGVLSFDKESYSEEQLLEVGLEAGAEDII------DDGE------VWQVRCAP 177
Query: 262 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDE 297
+++T + +EAG+ ++ ++P T+ VD E
Sbjct: 178 EDFTPLQQAYQEAGMEV-SEAELTMVPQNTVGVDPE 212
>gi|15802466|ref|NP_288492.1| hypothetical protein Z3140 [Escherichia coli O157:H7 str. EDL933]
gi|15832034|ref|NP_310807.1| hypothetical protein ECs2780 [Escherichia coli O157:H7 str. Sakai]
gi|168758968|ref|ZP_02783975.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4401]
gi|168764964|ref|ZP_02789971.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4501]
gi|168770295|ref|ZP_02795302.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4486]
gi|168778146|ref|ZP_02803153.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4196]
gi|168784069|ref|ZP_02809076.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4076]
gi|168789406|ref|ZP_02814413.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC869]
gi|168802633|ref|ZP_02827640.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC508]
gi|195940090|ref|ZP_03085472.1| hypothetical protein EscherichcoliO157_27485 [Escherichia coli
O157:H7 str. EC4024]
gi|208816534|ref|ZP_03257654.1| conserved hypothetical protein TIGR01033 [Escherichia coli O157:H7
str. EC4045]
gi|208819584|ref|ZP_03259904.1| conserved hypothetical protein TIGR01033 [Escherichia coli O157:H7
str. EC4042]
gi|209399007|ref|YP_002271149.1| hypothetical protein ECH74115_2825 [Escherichia coli O157:H7 str.
EC4115]
gi|217329568|ref|ZP_03445647.1| conserved hypothetical protein TIGR01033 [Escherichia coli O157:H7
str. TW14588]
gi|254793685|ref|YP_003078522.1| hypothetical protein ECSP_2645 [Escherichia coli O157:H7 str.
TW14359]
gi|261226500|ref|ZP_05940781.1| hypothetical protein EscherichiacoliO157_18170 [Escherichia coli
O157:H7 str. FRIK2000]
gi|261254693|ref|ZP_05947226.1| hypothetical protein EscherichiacoliO157EcO_02585 [Escherichia coli
O157:H7 str. FRIK966]
gi|291283214|ref|YP_003500032.1| hypothetical protein G2583_2492 [Escherichia coli O55:H7 str.
CB9615]
gi|387507280|ref|YP_006159536.1| hypothetical protein ECO55CA74_11995 [Escherichia coli O55:H7 str.
RM12579]
gi|387883133|ref|YP_006313435.1| hypothetical protein CDCO157_2566 [Escherichia coli Xuzhou21]
gi|416313868|ref|ZP_11658435.1| hypothetical protein ECoA_04242 [Escherichia coli O157:H7 str.
1044]
gi|416321327|ref|ZP_11663382.1| hypothetical protein ECoD_03694 [Escherichia coli O157:H7 str.
EC1212]
gi|416324960|ref|ZP_11665518.1| hypothetical protein ECF_00318 [Escherichia coli O157:H7 str. 1125]
gi|416774778|ref|ZP_11874112.1| hypothetical protein ECO5101_07176 [Escherichia coli O157:H7 str.
G5101]
gi|416786433|ref|ZP_11879012.1| hypothetical protein ECO9389_09927 [Escherichia coli O157:H- str.
493-89]
gi|416797846|ref|ZP_11883934.1| hypothetical protein ECO2687_08484 [Escherichia coli O157:H- str. H
2687]
gi|416808865|ref|ZP_11888597.1| hypothetical protein ECO7815_00754 [Escherichia coli O55:H7 str.
3256-97]
gi|416819286|ref|ZP_11893152.1| hypothetical protein ECO5905_05226 [Escherichia coli O55:H7 str.
USDA 5905]
gi|416829767|ref|ZP_11898464.1| hypothetical protein ECOSU61_14119 [Escherichia coli O157:H7 str.
LSU-61]
gi|419045922|ref|ZP_13592864.1| hypothetical protein ECDEC3A_2743 [Escherichia coli DEC3A]
gi|419051602|ref|ZP_13598481.1| hypothetical protein ECDEC3B_2895 [Escherichia coli DEC3B]
gi|419057609|ref|ZP_13604420.1| hypothetical protein ECDEC3C_3187 [Escherichia coli DEC3C]
gi|419063023|ref|ZP_13609759.1| hypothetical protein ECDEC3D_2814 [Escherichia coli DEC3D]
gi|419069905|ref|ZP_13615536.1| hypothetical protein ECDEC3E_2981 [Escherichia coli DEC3E]
gi|419075982|ref|ZP_13621508.1| hypothetical protein ECDEC3F_3078 [Escherichia coli DEC3F]
gi|419081122|ref|ZP_13626575.1| hypothetical protein ECDEC4A_2721 [Escherichia coli DEC4A]
gi|419086774|ref|ZP_13632141.1| hypothetical protein ECDEC4B_2698 [Escherichia coli DEC4B]
gi|419092871|ref|ZP_13638161.1| hypothetical protein ECDEC4C_2791 [Escherichia coli DEC4C]
gi|419098655|ref|ZP_13643862.1| hypothetical protein ECDEC4D_2651 [Escherichia coli DEC4D]
gi|419109948|ref|ZP_13655010.1| hypothetical protein ECDEC4F_2764 [Escherichia coli DEC4F]
gi|419115264|ref|ZP_13660283.1| hypothetical protein ECDEC5A_2435 [Escherichia coli DEC5A]
gi|419120914|ref|ZP_13665875.1| hypothetical protein ECDEC5B_2732 [Escherichia coli DEC5B]
gi|419126446|ref|ZP_13671334.1| hypothetical protein ECDEC5C_2500 [Escherichia coli DEC5C]
gi|419131952|ref|ZP_13676792.1| hypothetical protein ECDEC5D_2708 [Escherichia coli DEC5D]
gi|419136889|ref|ZP_13681687.1| hypothetical protein ECDEC5E_2387 [Escherichia coli DEC5E]
gi|420269953|ref|ZP_14772321.1| hypothetical protein ECPA22_2881 [Escherichia coli PA22]
gi|420274484|ref|ZP_14776805.1| hypothetical protein ECPA40_1733 [Escherichia coli PA40]
gi|420281066|ref|ZP_14783305.1| hypothetical protein ECTW06591_2597 [Escherichia coli TW06591]
gi|420287139|ref|ZP_14789335.1| hypothetical protein ECTW10246_3021 [Escherichia coli TW10246]
gi|420292791|ref|ZP_14794921.1| hypothetical protein ECTW11039_2920 [Escherichia coli TW11039]
gi|420298623|ref|ZP_14800679.1| hypothetical protein ECTW09109_3088 [Escherichia coli TW09109]
gi|420304479|ref|ZP_14806484.1| hypothetical protein ECTW10119_3174 [Escherichia coli TW10119]
gi|420310067|ref|ZP_14812006.1| hypothetical protein ECEC1738_2895 [Escherichia coli EC1738]
gi|420315663|ref|ZP_14817542.1| hypothetical protein ECEC1734_2886 [Escherichia coli EC1734]
gi|421812688|ref|ZP_16248430.1| hypothetical protein EC80416_2468 [Escherichia coli 8.0416]
gi|421818747|ref|ZP_16254252.1| hypothetical protein EC100821_2628 [Escherichia coli 10.0821]
gi|421824345|ref|ZP_16259733.1| hypothetical protein ECFRIK920_2762 [Escherichia coli FRIK920]
gi|421831361|ref|ZP_16266654.1| hypothetical protein ECPA7_3507 [Escherichia coli PA7]
gi|423714501|ref|ZP_17688757.1| hypothetical protein ECPA31_2790 [Escherichia coli PA31]
gi|424077905|ref|ZP_17814941.1| hypothetical protein ECFDA505_2870 [Escherichia coli FDA505]
gi|424084278|ref|ZP_17820823.1| hypothetical protein ECFDA517_3128 [Escherichia coli FDA517]
gi|424090715|ref|ZP_17826717.1| hypothetical protein ECFRIK1996_2917 [Escherichia coli FRIK1996]
gi|424097230|ref|ZP_17832628.1| hypothetical protein ECFRIK1985_3021 [Escherichia coli FRIK1985]
gi|424103547|ref|ZP_17838402.1| hypothetical protein ECFRIK1990_3004 [Escherichia coli FRIK1990]
gi|424110301|ref|ZP_17844600.1| hypothetical protein EC93001_3036 [Escherichia coli 93-001]
gi|424115998|ref|ZP_17849912.1| hypothetical protein ECPA3_2807 [Escherichia coli PA3]
gi|424122401|ref|ZP_17855794.1| hypothetical protein ECPA5_2899 [Escherichia coli PA5]
gi|424128542|ref|ZP_17861486.1| hypothetical protein ECPA9_3020 [Escherichia coli PA9]
gi|424134699|ref|ZP_17867223.1| hypothetical protein ECPA10_3029 [Escherichia coli PA10]
gi|424141327|ref|ZP_17873285.1| hypothetical protein ECPA14_2974 [Escherichia coli PA14]
gi|424147752|ref|ZP_17879194.1| hypothetical protein ECPA15_3100 [Escherichia coli PA15]
gi|424153698|ref|ZP_17884693.1| hypothetical protein ECPA24_2792 [Escherichia coli PA24]
gi|424237439|ref|ZP_17890125.1| hypothetical protein ECPA25_2637 [Escherichia coli PA25]
gi|424316049|ref|ZP_17896044.1| hypothetical protein ECPA28_2993 [Escherichia coli PA28]
gi|424450149|ref|ZP_17901899.1| hypothetical protein ECPA32_2960 [Escherichia coli PA32]
gi|424456279|ref|ZP_17907484.1| hypothetical protein ECPA33_2917 [Escherichia coli PA33]
gi|424462577|ref|ZP_17913120.1| hypothetical protein ECPA39_2890 [Escherichia coli PA39]
gi|424468970|ref|ZP_17918868.1| hypothetical protein ECPA41_2919 [Escherichia coli PA41]
gi|424475574|ref|ZP_17924958.1| hypothetical protein ECPA42_3071 [Escherichia coli PA42]
gi|424481316|ref|ZP_17930338.1| hypothetical protein ECTW07945_2867 [Escherichia coli TW07945]
gi|424487482|ref|ZP_17936090.1| hypothetical protein ECTW09098_2945 [Escherichia coli TW09098]
gi|424493938|ref|ZP_17941789.1| hypothetical protein ECTW09195_2984 [Escherichia coli TW09195]
gi|424500743|ref|ZP_17947726.1| hypothetical protein ECEC4203_2879 [Escherichia coli EC4203]
gi|424506922|ref|ZP_17953412.1| hypothetical protein ECEC4196_2864 [Escherichia coli EC4196]
gi|424514389|ref|ZP_17959145.1| hypothetical protein ECTW14313_2817 [Escherichia coli TW14313]
gi|424520675|ref|ZP_17964849.1| hypothetical protein ECTW14301_2761 [Escherichia coli TW14301]
gi|424526590|ref|ZP_17970352.1| hypothetical protein ECEC4421_2851 [Escherichia coli EC4421]
gi|424532757|ref|ZP_17976141.1| hypothetical protein ECEC4422_2986 [Escherichia coli EC4422]
gi|424538753|ref|ZP_17981752.1| hypothetical protein ECEC4013_3080 [Escherichia coli EC4013]
gi|424544697|ref|ZP_17987205.1| hypothetical protein ECEC4402_2843 [Escherichia coli EC4402]
gi|424550971|ref|ZP_17992902.1| hypothetical protein ECEC4439_2805 [Escherichia coli EC4439]
gi|424557238|ref|ZP_17998695.1| hypothetical protein ECEC4436_2804 [Escherichia coli EC4436]
gi|424563574|ref|ZP_18004615.1| hypothetical protein ECEC4437_2950 [Escherichia coli EC4437]
gi|424569618|ref|ZP_18010256.1| hypothetical protein ECEC4448_2814 [Escherichia coli EC4448]
gi|424575773|ref|ZP_18015930.1| hypothetical protein ECEC1845_2789 [Escherichia coli EC1845]
gi|424581654|ref|ZP_18021361.1| hypothetical protein ECEC1863_2545 [Escherichia coli EC1863]
gi|425098483|ref|ZP_18501260.1| hypothetical protein EC34870_3045 [Escherichia coli 3.4870]
gi|425104639|ref|ZP_18506985.1| hypothetical protein EC52239_3043 [Escherichia coli 5.2239]
gi|425110486|ref|ZP_18512468.1| hypothetical protein EC60172_3069 [Escherichia coli 6.0172]
gi|425126288|ref|ZP_18527526.1| hypothetical protein EC80586_3095 [Escherichia coli 8.0586]
gi|425132181|ref|ZP_18533059.1| hypothetical protein EC82524_2832 [Escherichia coli 8.2524]
gi|425138550|ref|ZP_18539002.1| hypothetical protein EC100833_3030 [Escherichia coli 10.0833]
gi|425144516|ref|ZP_18544556.1| hypothetical protein EC100869_2796 [Escherichia coli 10.0869]
gi|425150526|ref|ZP_18550189.1| hypothetical protein EC880221_2831 [Escherichia coli 88.0221]
gi|425156410|ref|ZP_18555714.1| hypothetical protein ECPA34_2987 [Escherichia coli PA34]
gi|425162950|ref|ZP_18561863.1| hypothetical protein ECFDA506_3369 [Escherichia coli FDA506]
gi|425168571|ref|ZP_18567097.1| hypothetical protein ECFDA507_3003 [Escherichia coli FDA507]
gi|425174667|ref|ZP_18572815.1| hypothetical protein ECFDA504_2960 [Escherichia coli FDA504]
gi|425180599|ref|ZP_18578362.1| hypothetical protein ECFRIK1999_3064 [Escherichia coli FRIK1999]
gi|425186866|ref|ZP_18584206.1| hypothetical protein ECFRIK1997_3124 [Escherichia coli FRIK1997]
gi|425193712|ref|ZP_18590536.1| hypothetical protein ECNE1487_3333 [Escherichia coli NE1487]
gi|425200070|ref|ZP_18596369.1| hypothetical protein ECNE037_3238 [Escherichia coli NE037]
gi|425206544|ref|ZP_18602404.1| hypothetical protein ECFRIK2001_3325 [Escherichia coli FRIK2001]
gi|425212291|ref|ZP_18607754.1| hypothetical protein ECPA4_3060 [Escherichia coli PA4]
gi|425218410|ref|ZP_18613437.1| hypothetical protein ECPA23_2928 [Escherichia coli PA23]
gi|425224928|ref|ZP_18619471.1| hypothetical protein ECPA49_3037 [Escherichia coli PA49]
gi|425231223|ref|ZP_18625327.1| hypothetical protein ECPA45_3112 [Escherichia coli PA45]
gi|425237312|ref|ZP_18631052.1| hypothetical protein ECTT12B_2941 [Escherichia coli TT12B]
gi|425243403|ref|ZP_18636765.1| hypothetical protein ECMA6_3132 [Escherichia coli MA6]
gi|425249526|ref|ZP_18642506.1| hypothetical protein EC5905_3158 [Escherichia coli 5905]
gi|425255305|ref|ZP_18647879.1| hypothetical protein ECCB7326_2925 [Escherichia coli CB7326]
gi|425261607|ref|ZP_18653676.1| hypothetical protein ECEC96038_2858 [Escherichia coli EC96038]
gi|425267699|ref|ZP_18659363.1| hypothetical protein EC5412_2970 [Escherichia coli 5412]
gi|425295084|ref|ZP_18685347.1| hypothetical protein ECPA38_2816 [Escherichia coli PA38]
gi|425311779|ref|ZP_18701001.1| hypothetical protein ECEC1735_2916 [Escherichia coli EC1735]
gi|425317734|ref|ZP_18706564.1| hypothetical protein ECEC1736_2831 [Escherichia coli EC1736]
gi|425323827|ref|ZP_18712238.1| hypothetical protein ECEC1737_2830 [Escherichia coli EC1737]
gi|425329996|ref|ZP_18717943.1| hypothetical protein ECEC1846_2805 [Escherichia coli EC1846]
gi|425336142|ref|ZP_18723613.1| hypothetical protein ECEC1847_2800 [Escherichia coli EC1847]
gi|425342585|ref|ZP_18729545.1| hypothetical protein ECEC1848_3001 [Escherichia coli EC1848]
gi|425348386|ref|ZP_18734939.1| hypothetical protein ECEC1849_2742 [Escherichia coli EC1849]
gi|425354690|ref|ZP_18740818.1| hypothetical protein ECEC1850_2983 [Escherichia coli EC1850]
gi|425360641|ref|ZP_18746358.1| hypothetical protein ECEC1856_2800 [Escherichia coli EC1856]
gi|425366793|ref|ZP_18752056.1| hypothetical protein ECEC1862_2809 [Escherichia coli EC1862]
gi|425373206|ref|ZP_18757924.1| hypothetical protein ECEC1864_2983 [Escherichia coli EC1864]
gi|425386033|ref|ZP_18769660.1| hypothetical protein ECEC1866_2663 [Escherichia coli EC1866]
gi|425392723|ref|ZP_18775902.1| hypothetical protein ECEC1868_2993 [Escherichia coli EC1868]
gi|425398872|ref|ZP_18781644.1| hypothetical protein ECEC1869_2987 [Escherichia coli EC1869]
gi|425404919|ref|ZP_18787229.1| hypothetical protein ECEC1870_2746 [Escherichia coli EC1870]
gi|425411473|ref|ZP_18793298.1| hypothetical protein ECNE098_3086 [Escherichia coli NE098]
gi|425417758|ref|ZP_18799086.1| hypothetical protein ECFRIK523_2910 [Escherichia coli FRIK523]
gi|425429058|ref|ZP_18809729.1| hypothetical protein EC01304_3052 [Escherichia coli 0.1304]
gi|428947412|ref|ZP_19019766.1| hypothetical protein EC881467_2958 [Escherichia coli 88.1467]
gi|428953634|ref|ZP_19025464.1| hypothetical protein EC881042_3003 [Escherichia coli 88.1042]
gi|428959554|ref|ZP_19030910.1| hypothetical protein EC890511_2914 [Escherichia coli 89.0511]
gi|428966004|ref|ZP_19036843.1| hypothetical protein EC900091_3189 [Escherichia coli 90.0091]
gi|428971844|ref|ZP_19042236.1| hypothetical protein EC900039_2730 [Escherichia coli 90.0039]
gi|428978450|ref|ZP_19048313.1| hypothetical protein EC902281_2979 [Escherichia coli 90.2281]
gi|428984211|ref|ZP_19053642.1| hypothetical protein EC930055_2911 [Escherichia coli 93.0055]
gi|428990368|ref|ZP_19059397.1| hypothetical protein EC930056_2958 [Escherichia coli 93.0056]
gi|428996140|ref|ZP_19064806.1| hypothetical protein EC940618_2781 [Escherichia coli 94.0618]
gi|429008500|ref|ZP_19076079.1| hypothetical protein EC951288_2715 [Escherichia coli 95.1288]
gi|429015003|ref|ZP_19081950.1| hypothetical protein EC950943_3029 [Escherichia coli 95.0943]
gi|429020922|ref|ZP_19087475.1| hypothetical protein EC960428_2815 [Escherichia coli 96.0428]
gi|429026918|ref|ZP_19092993.1| hypothetical protein EC960427_2934 [Escherichia coli 96.0427]
gi|429032987|ref|ZP_19098574.1| hypothetical protein EC960939_2843 [Escherichia coli 96.0939]
gi|429039136|ref|ZP_19104304.1| hypothetical protein EC960932_2965 [Escherichia coli 96.0932]
gi|429045162|ref|ZP_19109909.1| hypothetical protein EC960107_2915 [Escherichia coli 96.0107]
gi|429050594|ref|ZP_19115185.1| hypothetical protein EC970003_2711 [Escherichia coli 97.0003]
gi|429055842|ref|ZP_19120218.1| hypothetical protein EC971742_2393 [Escherichia coli 97.1742]
gi|429061473|ref|ZP_19125530.1| hypothetical protein EC970007_2340 [Escherichia coli 97.0007]
gi|429067593|ref|ZP_19131121.1| hypothetical protein EC990672_2874 [Escherichia coli 99.0672]
gi|429073570|ref|ZP_19136853.1| hypothetical protein EC990678_2672 [Escherichia coli 99.0678]
gi|429078874|ref|ZP_19142031.1| hypothetical protein EC990713_2698 [Escherichia coli 99.0713]
gi|429826823|ref|ZP_19357938.1| hypothetical protein EC960109_3021 [Escherichia coli 96.0109]
gi|429833113|ref|ZP_19363572.1| hypothetical protein EC970010_2907 [Escherichia coli 97.0010]
gi|444925289|ref|ZP_21244666.1| hypothetical protein EC09BKT78844_2970 [Escherichia coli
09BKT078844]
gi|444931108|ref|ZP_21250185.1| hypothetical protein EC990814_2514 [Escherichia coli 99.0814]
gi|444936395|ref|ZP_21255220.1| hypothetical protein EC990815_2378 [Escherichia coli 99.0815]
gi|444942068|ref|ZP_21260627.1| hypothetical protein EC990816_2498 [Escherichia coli 99.0816]
gi|444947653|ref|ZP_21265996.1| hypothetical protein EC990839_2513 [Escherichia coli 99.0839]
gi|444953229|ref|ZP_21271358.1| hypothetical protein EC990848_2528 [Escherichia coli 99.0848]
gi|444958729|ref|ZP_21276618.1| hypothetical protein EC991753_2582 [Escherichia coli 99.1753]
gi|444963917|ref|ZP_21281569.1| hypothetical protein EC991775_2451 [Escherichia coli 99.1775]
gi|444969773|ref|ZP_21287172.1| hypothetical protein EC991793_2703 [Escherichia coli 99.1793]
gi|444980574|ref|ZP_21297510.1| hypothetical protein ECATCC700728_2413 [Escherichia coli ATCC
700728]
gi|444985940|ref|ZP_21302746.1| hypothetical protein ECPA11_2554 [Escherichia coli PA11]
gi|444991219|ref|ZP_21307893.1| hypothetical protein ECPA19_2495 [Escherichia coli PA19]
gi|444996455|ref|ZP_21312983.1| hypothetical protein ECPA13_2250 [Escherichia coli PA13]
gi|445002061|ref|ZP_21318473.1| hypothetical protein ECPA2_2620 [Escherichia coli PA2]
gi|445007573|ref|ZP_21323845.1| hypothetical protein ECPA47_2498 [Escherichia coli PA47]
gi|445012660|ref|ZP_21328792.1| hypothetical protein ECPA48_2364 [Escherichia coli PA48]
gi|445018367|ref|ZP_21334355.1| hypothetical protein ECPA8_2505 [Escherichia coli PA8]
gi|445024054|ref|ZP_21339904.1| hypothetical protein EC71982_2723 [Escherichia coli 7.1982]
gi|445029234|ref|ZP_21344941.1| hypothetical protein EC991781_2648 [Escherichia coli 99.1781]
gi|445034755|ref|ZP_21350308.1| hypothetical protein EC991762_2703 [Escherichia coli 99.1762]
gi|445045575|ref|ZP_21360859.1| hypothetical protein EC34880_2532 [Escherichia coli 3.4880]
gi|445051163|ref|ZP_21366248.1| hypothetical protein EC950083_2477 [Escherichia coli 95.0083]
gi|445056955|ref|ZP_21371836.1| hypothetical protein EC990670_2765 [Escherichia coli 99.0670]
gi|452971002|ref|ZP_21969229.1| hypothetical protein EC4009_RS20690 [Escherichia coli O157:H7 str.
EC4009]
gi|33517064|sp|Q8X8V5.1|YEEN_ECO57 RecName: Full=Probable transcriptional regulatory protein YeeN
gi|12516159|gb|AAG57046.1|AE005424_4 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
gi|13362248|dbj|BAB36203.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|187766808|gb|EDU30652.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4196]
gi|188998688|gb|EDU67674.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4076]
gi|189354329|gb|EDU72748.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4401]
gi|189360814|gb|EDU79233.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4486]
gi|189365131|gb|EDU83547.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4501]
gi|189371008|gb|EDU89424.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC869]
gi|189375413|gb|EDU93829.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC508]
gi|208730877|gb|EDZ79566.1| conserved hypothetical protein TIGR01033 [Escherichia coli O157:H7
str. EC4045]
gi|208739707|gb|EDZ87389.1| conserved hypothetical protein TIGR01033 [Escherichia coli O157:H7
str. EC4042]
gi|209160407|gb|ACI37840.1| conserved hypothetical protein TIGR01033 [Escherichia coli O157:H7
str. EC4115]
gi|209748350|gb|ACI72482.1| hypothetical protein ECs2780 [Escherichia coli]
gi|209748352|gb|ACI72483.1| hypothetical protein ECs2780 [Escherichia coli]
gi|209748354|gb|ACI72484.1| hypothetical protein ECs2780 [Escherichia coli]
gi|217317336|gb|EEC25765.1| conserved hypothetical protein TIGR01033 [Escherichia coli O157:H7
str. TW14588]
gi|254593085|gb|ACT72446.1| conserved protein [Escherichia coli O157:H7 str. TW14359]
gi|290763087|gb|ADD57048.1| UPF0082 protein yeeN [Escherichia coli O55:H7 str. CB9615]
gi|320189641|gb|EFW64298.1| hypothetical protein ECoD_03694 [Escherichia coli O157:H7 str.
EC1212]
gi|320641444|gb|EFX10882.1| hypothetical protein ECO5101_07176 [Escherichia coli O157:H7 str.
G5101]
gi|320646815|gb|EFX15687.1| hypothetical protein ECO9389_09927 [Escherichia coli O157:H- str.
493-89]
gi|320652092|gb|EFX20431.1| hypothetical protein ECO2687_08484 [Escherichia coli O157:H- str. H
2687]
gi|320657687|gb|EFX25479.1| hypothetical protein ECO7815_00754 [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320663369|gb|EFX30669.1| hypothetical protein ECO5905_05226 [Escherichia coli O55:H7 str.
USDA 5905]
gi|320668178|gb|EFX35041.1| hypothetical protein ECOSU61_14119 [Escherichia coli O157:H7 str.
LSU-61]
gi|326340072|gb|EGD63877.1| hypothetical protein ECoA_04242 [Escherichia coli O157:H7 str.
1044]
gi|326346470|gb|EGD70206.1| hypothetical protein ECF_00318 [Escherichia coli O157:H7 str. 1125]
gi|374359274|gb|AEZ40981.1| hypothetical protein ECO55CA74_11995 [Escherichia coli O55:H7 str.
RM12579]
gi|377894241|gb|EHU58665.1| hypothetical protein ECDEC3A_2743 [Escherichia coli DEC3A]
gi|377894631|gb|EHU59049.1| hypothetical protein ECDEC3B_2895 [Escherichia coli DEC3B]
gi|377905693|gb|EHU69953.1| hypothetical protein ECDEC3C_3187 [Escherichia coli DEC3C]
gi|377911143|gb|EHU75319.1| hypothetical protein ECDEC3D_2814 [Escherichia coli DEC3D]
gi|377913433|gb|EHU77571.1| hypothetical protein ECDEC3E_2981 [Escherichia coli DEC3E]
gi|377922600|gb|EHU86585.1| hypothetical protein ECDEC3F_3078 [Escherichia coli DEC3F]
gi|377927192|gb|EHU91113.1| hypothetical protein ECDEC4A_2721 [Escherichia coli DEC4A]
gi|377932031|gb|EHU95887.1| hypothetical protein ECDEC4B_2698 [Escherichia coli DEC4B]
gi|377943061|gb|EHV06783.1| hypothetical protein ECDEC4C_2791 [Escherichia coli DEC4C]
gi|377943447|gb|EHV07162.1| hypothetical protein ECDEC4D_2651 [Escherichia coli DEC4D]
gi|377957869|gb|EHV21394.1| hypothetical protein ECDEC4F_2764 [Escherichia coli DEC4F]
gi|377961059|gb|EHV24533.1| hypothetical protein ECDEC5A_2435 [Escherichia coli DEC5A]
gi|377967889|gb|EHV31289.1| hypothetical protein ECDEC5B_2732 [Escherichia coli DEC5B]
gi|377975837|gb|EHV39153.1| hypothetical protein ECDEC5C_2500 [Escherichia coli DEC5C]
gi|377976475|gb|EHV39784.1| hypothetical protein ECDEC5D_2708 [Escherichia coli DEC5D]
gi|377984775|gb|EHV48003.1| hypothetical protein ECDEC5E_2387 [Escherichia coli DEC5E]
gi|386796591|gb|AFJ29625.1| hypothetical protein CDCO157_2566 [Escherichia coli Xuzhou21]
gi|390644394|gb|EIN23653.1| hypothetical protein ECFRIK1996_2917 [Escherichia coli FRIK1996]
gi|390644531|gb|EIN23780.1| hypothetical protein ECFDA517_3128 [Escherichia coli FDA517]
gi|390644981|gb|EIN24168.1| hypothetical protein ECFDA505_2870 [Escherichia coli FDA505]
gi|390662748|gb|EIN40316.1| hypothetical protein EC93001_3036 [Escherichia coli 93-001]
gi|390664435|gb|EIN41834.1| hypothetical protein ECFRIK1985_3021 [Escherichia coli FRIK1985]
gi|390665611|gb|EIN42896.1| hypothetical protein ECFRIK1990_3004 [Escherichia coli FRIK1990]
gi|390679975|gb|EIN55833.1| hypothetical protein ECPA3_2807 [Escherichia coli PA3]
gi|390683545|gb|EIN59218.1| hypothetical protein ECPA5_2899 [Escherichia coli PA5]
gi|390684985|gb|EIN60571.1| hypothetical protein ECPA9_3020 [Escherichia coli PA9]
gi|390700387|gb|EIN74693.1| hypothetical protein ECPA10_3029 [Escherichia coli PA10]
gi|390702640|gb|EIN76761.1| hypothetical protein ECPA15_3100 [Escherichia coli PA15]
gi|390702927|gb|EIN76983.1| hypothetical protein ECPA14_2974 [Escherichia coli PA14]
gi|390714911|gb|EIN87781.1| hypothetical protein ECPA22_2881 [Escherichia coli PA22]
gi|390725869|gb|EIN98352.1| hypothetical protein ECPA25_2637 [Escherichia coli PA25]
gi|390725893|gb|EIN98373.1| hypothetical protein ECPA24_2792 [Escherichia coli PA24]
gi|390729135|gb|EIO01360.1| hypothetical protein ECPA28_2993 [Escherichia coli PA28]
gi|390744435|gb|EIO15330.1| hypothetical protein ECPA32_2960 [Escherichia coli PA32]
gi|390744883|gb|EIO15723.1| hypothetical protein ECPA31_2790 [Escherichia coli PA31]
gi|390746832|gb|EIO17460.1| hypothetical protein ECPA33_2917 [Escherichia coli PA33]
gi|390760673|gb|EIO29986.1| hypothetical protein ECPA40_1733 [Escherichia coli PA40]
gi|390769245|gb|EIO38185.1| hypothetical protein ECPA41_2919 [Escherichia coli PA41]
gi|390770756|gb|EIO39522.1| hypothetical protein ECPA39_2890 [Escherichia coli PA39]
gi|390770842|gb|EIO39584.1| hypothetical protein ECPA42_3071 [Escherichia coli PA42]
gi|390781898|gb|EIO49567.1| hypothetical protein ECTW06591_2597 [Escherichia coli TW06591]
gi|390790747|gb|EIO58151.1| hypothetical protein ECTW10246_3021 [Escherichia coli TW10246]
gi|390793754|gb|EIO61085.1| hypothetical protein ECTW07945_2867 [Escherichia coli TW07945]
gi|390797807|gb|EIO65035.1| hypothetical protein ECTW11039_2920 [Escherichia coli TW11039]
gi|390807656|gb|EIO74526.1| hypothetical protein ECTW09109_3088 [Escherichia coli TW09109]
gi|390808635|gb|EIO75469.1| hypothetical protein ECTW09098_2945 [Escherichia coli TW09098]
gi|390816572|gb|EIO83051.1| hypothetical protein ECTW10119_3174 [Escherichia coli TW10119]
gi|390828542|gb|EIO94205.1| hypothetical protein ECEC4203_2879 [Escherichia coli EC4203]
gi|390831843|gb|EIO97194.1| hypothetical protein ECTW09195_2984 [Escherichia coli TW09195]
gi|390833296|gb|EIO98370.1| hypothetical protein ECEC4196_2864 [Escherichia coli EC4196]
gi|390847908|gb|EIP11414.1| hypothetical protein ECTW14301_2761 [Escherichia coli TW14301]
gi|390849549|gb|EIP12974.1| hypothetical protein ECTW14313_2817 [Escherichia coli TW14313]
gi|390851771|gb|EIP15018.1| hypothetical protein ECEC4421_2851 [Escherichia coli EC4421]
gi|390862349|gb|EIP24539.1| hypothetical protein ECEC4422_2986 [Escherichia coli EC4422]
gi|390867249|gb|EIP29089.1| hypothetical protein ECEC4013_3080 [Escherichia coli EC4013]
gi|390873164|gb|EIP34406.1| hypothetical protein ECEC4402_2843 [Escherichia coli EC4402]
gi|390879996|gb|EIP40714.1| hypothetical protein ECEC4439_2805 [Escherichia coli EC4439]
gi|390884437|gb|EIP44748.1| hypothetical protein ECEC4436_2804 [Escherichia coli EC4436]
gi|390895670|gb|EIP55124.1| hypothetical protein ECEC4437_2950 [Escherichia coli EC4437]
gi|390898980|gb|EIP58238.1| hypothetical protein ECEC4448_2814 [Escherichia coli EC4448]
gi|390900891|gb|EIP60101.1| hypothetical protein ECEC1738_2895 [Escherichia coli EC1738]
gi|390908309|gb|EIP67135.1| hypothetical protein ECEC1734_2886 [Escherichia coli EC1734]
gi|390920597|gb|EIP78860.1| hypothetical protein ECEC1863_2545 [Escherichia coli EC1863]
gi|390921595|gb|EIP79741.1| hypothetical protein ECEC1845_2789 [Escherichia coli EC1845]
gi|408066122|gb|EKH00585.1| hypothetical protein ECPA7_3507 [Escherichia coli PA7]
gi|408070176|gb|EKH04547.1| hypothetical protein ECFRIK920_2762 [Escherichia coli FRIK920]
gi|408074186|gb|EKH08472.1| hypothetical protein ECPA34_2987 [Escherichia coli PA34]
gi|408080304|gb|EKH14381.1| hypothetical protein ECFDA506_3369 [Escherichia coli FDA506]
gi|408083587|gb|EKH17412.1| hypothetical protein ECFDA507_3003 [Escherichia coli FDA507]
gi|408092831|gb|EKH25990.1| hypothetical protein ECFDA504_2960 [Escherichia coli FDA504]
gi|408098715|gb|EKH31431.1| hypothetical protein ECFRIK1999_3064 [Escherichia coli FRIK1999]
gi|408105727|gb|EKH37873.1| hypothetical protein ECFRIK1997_3124 [Escherichia coli FRIK1997]
gi|408109780|gb|EKH41648.1| hypothetical protein ECNE1487_3333 [Escherichia coli NE1487]
gi|408117097|gb|EKH48335.1| hypothetical protein ECNE037_3238 [Escherichia coli NE037]
gi|408123274|gb|EKH54068.1| hypothetical protein ECFRIK2001_3325 [Escherichia coli FRIK2001]
gi|408128590|gb|EKH58886.1| hypothetical protein ECPA4_3060 [Escherichia coli PA4]
gi|408140069|gb|EKH69610.1| hypothetical protein ECPA23_2928 [Escherichia coli PA23]
gi|408142070|gb|EKH71462.1| hypothetical protein ECPA49_3037 [Escherichia coli PA49]
gi|408147251|gb|EKH76234.1| hypothetical protein ECPA45_3112 [Escherichia coli PA45]
gi|408155805|gb|EKH84066.1| hypothetical protein ECTT12B_2941 [Escherichia coli TT12B]
gi|408161777|gb|EKH89707.1| hypothetical protein ECMA6_3132 [Escherichia coli MA6]
gi|408164929|gb|EKH92670.1| hypothetical protein EC5905_3158 [Escherichia coli 5905]
gi|408175971|gb|EKI02862.1| hypothetical protein ECCB7326_2925 [Escherichia coli CB7326]
gi|408182681|gb|EKI09166.1| hypothetical protein ECEC96038_2858 [Escherichia coli EC96038]
gi|408183930|gb|EKI10336.1| hypothetical protein EC5412_2970 [Escherichia coli 5412]
gi|408219620|gb|EKI43739.1| hypothetical protein ECPA38_2816 [Escherichia coli PA38]
gi|408228968|gb|EKI52465.1| hypothetical protein ECEC1735_2916 [Escherichia coli EC1735]
gi|408239978|gb|EKI62699.1| hypothetical protein ECEC1736_2831 [Escherichia coli EC1736]
gi|408243993|gb|EKI66469.1| hypothetical protein ECEC1737_2830 [Escherichia coli EC1737]
gi|408248622|gb|EKI70634.1| hypothetical protein ECEC1846_2805 [Escherichia coli EC1846]
gi|408259194|gb|EKI80385.1| hypothetical protein ECEC1847_2800 [Escherichia coli EC1847]
gi|408261173|gb|EKI82189.1| hypothetical protein ECEC1848_3001 [Escherichia coli EC1848]
gi|408266803|gb|EKI87313.1| hypothetical protein ECEC1849_2742 [Escherichia coli EC1849]
gi|408276969|gb|EKI96827.1| hypothetical protein ECEC1850_2983 [Escherichia coli EC1850]
gi|408279231|gb|EKI98880.1| hypothetical protein ECEC1856_2800 [Escherichia coli EC1856]
gi|408290751|gb|EKJ09449.1| hypothetical protein ECEC1862_2809 [Escherichia coli EC1862]
gi|408292901|gb|EKJ11382.1| hypothetical protein ECEC1864_2983 [Escherichia coli EC1864]
gi|408309879|gb|EKJ26985.1| hypothetical protein ECEC1868_2993 [Escherichia coli EC1868]
gi|408309947|gb|EKJ27039.1| hypothetical protein ECEC1866_2663 [Escherichia coli EC1866]
gi|408321739|gb|EKJ37750.1| hypothetical protein ECEC1869_2987 [Escherichia coli EC1869]
gi|408327668|gb|EKJ43339.1| hypothetical protein ECNE098_3086 [Escherichia coli NE098]
gi|408327970|gb|EKJ43594.1| hypothetical protein ECEC1870_2746 [Escherichia coli EC1870]
gi|408338166|gb|EKJ52823.1| hypothetical protein ECFRIK523_2910 [Escherichia coli FRIK523]
gi|408347805|gb|EKJ61952.1| hypothetical protein EC01304_3052 [Escherichia coli 0.1304]
gi|408551025|gb|EKK28319.1| hypothetical protein EC52239_3043 [Escherichia coli 5.2239]
gi|408551857|gb|EKK29091.1| hypothetical protein EC34870_3045 [Escherichia coli 3.4870]
gi|408552421|gb|EKK29604.1| hypothetical protein EC60172_3069 [Escherichia coli 6.0172]
gi|408573224|gb|EKK49082.1| hypothetical protein EC80586_3095 [Escherichia coli 8.0586]
gi|408581970|gb|EKK57249.1| hypothetical protein EC100833_3030 [Escherichia coli 10.0833]
gi|408582009|gb|EKK57278.1| hypothetical protein EC82524_2832 [Escherichia coli 8.2524]
gi|408593060|gb|EKK67397.1| hypothetical protein EC100869_2796 [Escherichia coli 10.0869]
gi|408597538|gb|EKK71555.1| hypothetical protein EC880221_2831 [Escherichia coli 88.0221]
gi|408602103|gb|EKK75844.1| hypothetical protein EC80416_2468 [Escherichia coli 8.0416]
gi|408613274|gb|EKK86585.1| hypothetical protein EC100821_2628 [Escherichia coli 10.0821]
gi|427206223|gb|EKV76442.1| hypothetical protein EC881042_3003 [Escherichia coli 88.1042]
gi|427208507|gb|EKV78615.1| hypothetical protein EC890511_2914 [Escherichia coli 89.0511]
gi|427210086|gb|EKV80034.1| hypothetical protein EC881467_2958 [Escherichia coli 88.1467]
gi|427225211|gb|EKV93867.1| hypothetical protein EC902281_2979 [Escherichia coli 90.2281]
gi|427225517|gb|EKV94157.1| hypothetical protein EC900091_3189 [Escherichia coli 90.0091]
gi|427228717|gb|EKV97108.1| hypothetical protein EC900039_2730 [Escherichia coli 90.0039]
gi|427243787|gb|EKW11149.1| hypothetical protein EC930056_2958 [Escherichia coli 93.0056]
gi|427244011|gb|EKW11357.1| hypothetical protein EC930055_2911 [Escherichia coli 93.0055]
gi|427247141|gb|EKW14240.1| hypothetical protein EC940618_2781 [Escherichia coli 94.0618]
gi|427262972|gb|EKW28799.1| hypothetical protein EC950943_3029 [Escherichia coli 95.0943]
gi|427265845|gb|EKW31366.1| hypothetical protein EC951288_2715 [Escherichia coli 95.1288]
gi|427277741|gb|EKW42259.1| hypothetical protein EC960428_2815 [Escherichia coli 96.0428]
gi|427281703|gb|EKW46006.1| hypothetical protein EC960427_2934 [Escherichia coli 96.0427]
gi|427284518|gb|EKW48582.1| hypothetical protein EC960939_2843 [Escherichia coli 96.0939]
gi|427293473|gb|EKW56725.1| hypothetical protein EC960932_2965 [Escherichia coli 96.0932]
gi|427300697|gb|EKW63624.1| hypothetical protein EC960107_2915 [Escherichia coli 96.0107]
gi|427301233|gb|EKW64116.1| hypothetical protein EC970003_2711 [Escherichia coli 97.0003]
gi|427314734|gb|EKW76766.1| hypothetical protein EC971742_2393 [Escherichia coli 97.1742]
gi|427316883|gb|EKW78803.1| hypothetical protein EC970007_2340 [Escherichia coli 97.0007]
gi|427321554|gb|EKW83239.1| hypothetical protein EC990672_2874 [Escherichia coli 99.0672]
gi|427329797|gb|EKW91104.1| hypothetical protein EC990678_2672 [Escherichia coli 99.0678]
gi|427329891|gb|EKW91185.1| hypothetical protein EC990713_2698 [Escherichia coli 99.0713]
gi|429254768|gb|EKY39140.1| hypothetical protein EC960109_3021 [Escherichia coli 96.0109]
gi|429256703|gb|EKY40852.1| hypothetical protein EC970010_2907 [Escherichia coli 97.0010]
gi|444539440|gb|ELV19199.1| hypothetical protein EC990814_2514 [Escherichia coli 99.0814]
gi|444541679|gb|ELV21134.1| hypothetical protein EC09BKT78844_2970 [Escherichia coli
09BKT078844]
gi|444548485|gb|ELV26904.1| hypothetical protein EC990815_2378 [Escherichia coli 99.0815]
gi|444559022|gb|ELV36274.1| hypothetical protein EC990839_2513 [Escherichia coli 99.0839]
gi|444560275|gb|ELV37444.1| hypothetical protein EC990816_2498 [Escherichia coli 99.0816]
gi|444565146|gb|ELV42044.1| hypothetical protein EC990848_2528 [Escherichia coli 99.0848]
gi|444574545|gb|ELV50831.1| hypothetical protein EC991753_2582 [Escherichia coli 99.1753]
gi|444579059|gb|ELV55079.1| hypothetical protein EC991775_2451 [Escherichia coli 99.1775]
gi|444580921|gb|ELV56802.1| hypothetical protein EC991793_2703 [Escherichia coli 99.1793]
gi|444594875|gb|ELV70023.1| hypothetical protein ECPA11_2554 [Escherichia coli PA11]
gi|444594960|gb|ELV70097.1| hypothetical protein ECATCC700728_2413 [Escherichia coli ATCC
700728]
gi|444608599|gb|ELV83109.1| hypothetical protein ECPA13_2250 [Escherichia coli PA13]
gi|444608737|gb|ELV83232.1| hypothetical protein ECPA19_2495 [Escherichia coli PA19]
gi|444617062|gb|ELV91190.1| hypothetical protein ECPA2_2620 [Escherichia coli PA2]
gi|444625444|gb|ELV99282.1| hypothetical protein ECPA47_2498 [Escherichia coli PA47]
gi|444625490|gb|ELV99322.1| hypothetical protein ECPA48_2364 [Escherichia coli PA48]
gi|444631052|gb|ELW04666.1| hypothetical protein ECPA8_2505 [Escherichia coli PA8]
gi|444640366|gb|ELW13636.1| hypothetical protein EC71982_2723 [Escherichia coli 7.1982]
gi|444643647|gb|ELW16786.1| hypothetical protein EC991781_2648 [Escherichia coli 99.1781]
gi|444646372|gb|ELW19384.1| hypothetical protein EC991762_2703 [Escherichia coli 99.1762]
gi|444661666|gb|ELW33959.1| hypothetical protein EC34880_2532 [Escherichia coli 3.4880]
gi|444666379|gb|ELW38451.1| hypothetical protein EC950083_2477 [Escherichia coli 95.0083]
gi|444670590|gb|ELW42469.1| hypothetical protein EC990670_2765 [Escherichia coli 99.0670]
Length = 238
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 130/244 (53%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ +A K+G P+P NT L V+E+AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGATSKIYAKFGVEIYAAAKQGEPDPELNTSLKFVIERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A G E F++ YE +G G I+ E LT + R++A VR + GG
Sbjct: 61 KHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMIIAETLTSNVNRTIANVRTIFNKKGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV + F V I F +D D + +I L+A DV D T+E+ Y
Sbjct: 121 IGAAGSVSYMFDNTGV--IVFKGSDPDHIFEILLEAEV-DV------RDVTEEEGNIVIY 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+D + I L+ AGI + E++ + +E+ E +E+ + L+ L + DDV
Sbjct: 172 --TEPTDLHKGIAA-LKAAGISEFSTTELEMIAQSEVELSPEDLEIFEGLVDALEDDDDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QKVY 232
>gi|381397390|ref|ZP_09922802.1| UPF0082 protein yeeN [Microbacterium laevaniformans OR221]
gi|380775375|gb|EIC08667.1| UPF0082 protein yeeN [Microbacterium laevaniformans OR221]
Length = 252
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 132/238 (55%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K D+++AK ++++ K + A K GGP+ N L + KAK+ VPKD ++R IKR
Sbjct: 13 KKAVIDSRRAKSWAKLIKNIEVAAKLGGPDLQGNPTLFDAVLKAKKTSVPKDNIDRAIKR 72
Query: 146 ASEKGQEA--FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
+ G E+ + +YE YG GV++++E LTD R+ A VR + GG +ADPGSV
Sbjct: 73 GAGIGGESVEYSSIMYEGYGPNGVALMIECLTDNKNRAAAEVRTALSRNGGTLADPGSVA 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R V+ + + +D ++ AL+AGAE+ IEP + ++V++ + +
Sbjct: 133 YNFSRKGVIVVSEENTSEDDVMLAALEAGAEE-IEPHA-----------QGFEVITEASD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ + L +AGI +E+ + E +P +E+D E LI L + DDV V+++
Sbjct: 181 LVAVRSALTDAGIEYESAD-VEFVPNLKVEIDAETARKIFRLIDALEDSDDVQNVFSN 237
>gi|162146620|ref|YP_001601079.1| hypothetical protein GDI_0798 [Gluconacetobacter diazotrophicus PAl
5]
gi|161785195|emb|CAP54741.1| conserved protein [Gluconacetobacter diazotrophicus PAl 5]
Length = 239
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 130/237 (54%), Gaps = 14/237 (5%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
RKGAQDA++A+ ++++ +E+ A + G P+P SN L A + A+E+++PKD VER IK+
Sbjct: 3 RKGAQDARRARQFAKVIREITVAARSGMPDPASNPRLRAAISAAREVNMPKDTVERAIKK 62
Query: 146 AS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMF 204
A+ G + + E YE YG GV+++VE LTD R+ + VR GG + + SV F
Sbjct: 63 ATGAGGGDDYAEVRYEGYGPAGVAVIVEALTDNRNRTASDVRAAFSKHGGSLGETNSVSF 122
Query: 205 KFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNY 264
F R V+ A +D++L+ A++AGAE+V + TDE ++V +++
Sbjct: 123 MFTRLGVITYPAAVATEDEMLEAAIEAGAENV-------ESTDEG-----HEVTCPVESF 170
Query: 265 TDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ L E + + P T + +D++ +LI L E DDV AVY +
Sbjct: 171 FAVRDAL-ETRFGEPSSAKFDWRPGTVVTLDEDKARGVLKLIDVLDEHDDVQAVYAN 226
>gi|429333867|ref|ZP_19214551.1| hypothetical protein CSV86_18497 [Pseudomonas putida CSV86]
gi|428761474|gb|EKX83704.1| hypothetical protein CSV86_18497 [Pseudomonas putida CSV86]
Length = 248
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 134/243 (55%), Gaps = 16/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK QDAK+ K++++ +E+ A K+GG +P SN L L+KA ++ +DI++
Sbjct: 8 ANIKHRKERQDAKRGKIFTKWIRELTVAAKQGGGDPASNPRLRLALDKALGANMSRDIID 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I R + + +E++ YE YG GGV+I+VE +TD R+ AAVR CGG +
Sbjct: 68 RAIARGAGTAEADNVEELSYEGYGPGGVAIMVEAMTDNRNRTAAAVRHAFSKCGGNLGTD 127
Query: 200 GSVMFKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
GSV + F R I F + D+D L++ A++A A+DV+ N D + + V
Sbjct: 128 GSVAYLFERKG--QISFGEGVDEDALMEAAMEADADDVVS---NGDGS--------FDVF 174
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
++ ++ + + L AG +D + P T+ E+D + + +LI L +LDDV V
Sbjct: 175 TSFASFYAVRSALEAAGFK-ASDAEIVMQPTTSAELDLDGAQKVLKLIDMLEDLDDVQNV 233
Query: 319 YTD 321
Y++
Sbjct: 234 YSN 236
>gi|56695969|ref|YP_166323.1| hypothetical protein SPO1072 [Ruegeria pomeroyi DSS-3]
gi|67462019|sp|Q5LUI2.1|Y1072_SILPO RecName: Full=Probable transcriptional regulatory protein SPO1072
gi|56677706|gb|AAV94372.1| conserved hypothetical protein TIGR01033 [Ruegeria pomeroyi DSS-3]
Length = 246
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 129/243 (53%), Gaps = 17/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKG QDA ++KL+S+ KE+ A K G P+P N L +++AK +PKD +E
Sbjct: 8 ANIQHRKGRQDAARSKLFSKFSKEITVAAKMGDPDPDKNPRLRLAIKEAKSQSMPKDNIE 67
Query: 141 RNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
R IK+A +A+ E YE YG GV+++VE +TD R+ + VR GG + + G
Sbjct: 68 RAIKKAIGGDGDAYEEIRYEGYGPNGVAVIVEAMTDNRNRTASNVRSTFTKHGGNLGETG 127
Query: 201 SVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
SV F F R V + D D ++ A++AGAEDV + +E + +
Sbjct: 128 SVGFMFERKGEVVYPASVGDADTVMMAAIEAGAEDV------------ESSEEGHVIWCA 175
Query: 261 SDNYTDITTKLR-EAGIPFETDNGSELL-PITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+ +++T L E G E+D+ + P TT E+D EAM+ +L+ L + DDV V
Sbjct: 176 DTDLNEVSTALEAELG---ESDSTKLVWKPSTTTELDLEAMQKLMKLVDALEDDDDVQRV 232
Query: 319 YTD 321
T+
Sbjct: 233 TTN 235
>gi|297588574|ref|ZP_06947217.1| glucose-1-phosphate adenylyltransferase [Finegoldia magna ATCC
53516]
gi|297573947|gb|EFH92668.1| glucose-1-phosphate adenylyltransferase [Finegoldia magna ATCC
53516]
Length = 241
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 138/243 (56%), Gaps = 21/243 (8%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
SKI +KG++DA++ K++++M + + AV++GG +P N L +V+EKA+ ++P D ++
Sbjct: 8 SKIKNKKGSEDARRGKVFTKMARAITVAVREGGADPEYNPSLKSVIEKARAENMPNDNID 67
Query: 141 RNIKRASEKGQEAFIEK-VYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+AS G A E VYE YG GV+++VE LTD R+ + VR GG +
Sbjct: 68 RAIKKASGDGDSANYENIVYEGYGPEGVAVIVECLTDNRNRTASDVRHYFDKFGGNLGQN 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV F F+R ++ I D+++++ +LDAGAED A+ V++
Sbjct: 128 GSVSFMFQRKGLLLIDADSLDEEEVMMDSLDAGAEDF-------------EADDGIFVIN 174
Query: 260 TS-DNYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEA-MELNKELIAKLLELDDV 315
T+ +++ + L + G F S+L+ P ++++DEA ++ ++LI L + DDV
Sbjct: 175 TAMEDFAQVRDTLLDKGYKFVK---SDLVYEPSNYVKINDEANVDKMEKLIDNLEDSDDV 231
Query: 316 DAV 318
V
Sbjct: 232 QQV 234
>gi|419104387|ref|ZP_13649523.1| hypothetical protein ECDEC4E_2699 [Escherichia coli DEC4E]
gi|377948672|gb|EHV12319.1| hypothetical protein ECDEC4E_2699 [Escherichia coli DEC4E]
Length = 238
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 130/244 (53%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ +A K+G P+P NT L V+E+AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGATSKIYAKFGVEIYAAAKQGEPDPELNTSLKFVIERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A G E F++ YE +G G I+ E LT + R++A VR + GG
Sbjct: 61 KHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMIIAETLTSNVNRTIANVRTIFNKKGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV + F V I F +D D + +I L+A DV D T+E+ Y
Sbjct: 121 IGAAGSVSYMFDNTGV--IVFKGSDPDHIFEILLEAEV-DV------RDVTEEEGNIVIY 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+D + I L+ AGI + E++ + +E+ E +E+ + L+ L + DDV
Sbjct: 172 --TEPTDLHKGIAA-LKAAGISEFSTTELEMITQSEVELSPEDLEIFEGLVDALEDDDDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QKVY 232
>gi|225077141|ref|ZP_03720340.1| hypothetical protein NEIFLAOT_02196 [Neisseria flavescens
NRL30031/H210]
gi|224951489|gb|EEG32698.1| hypothetical protein NEIFLAOT_02196 [Neisseria flavescens
NRL30031/H210]
Length = 242
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/252 (35%), Positives = 136/252 (53%), Gaps = 30/252 (11%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +K QDAK+ K+++R+ KE+ A + GG +P +N L LEKA E ++PKD V+
Sbjct: 8 ANIQHKKARQDAKRGKIFTRLIKEITVAARMGGGDPGANPRLRLALEKAAENNMPKDNVQ 67
Query: 141 RNIKRASE--KGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMAD 198
R I + + +G E +IE YE YG GG +++V+ LTD TR+VA VR GG +
Sbjct: 68 RAIDKGTGNLEGVE-YIELRYEGYGIGGAALMVDCLTDNKTRTVADVRHAFTKNGGNLGT 126
Query: 199 PGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
G V F F + + D+D L++ AL+AGAEDVI N+D + E VV
Sbjct: 127 DGCVAFNFVHQGYLVFE-PGVDEDALMEAALEAGAEDVI---TNDDGSIE--------VV 174
Query: 259 STSDNYTDITTKLREAG-------IPFETDNGSELLPITTIEVDDEAMELNKELIAKLLE 311
+ +++ + + L AG + T N +EL ++A+++ K LI L +
Sbjct: 175 TAPNDWAGVKSALEAAGYKSVDGDVTMRTQNETEL-------SGEDAVKMQK-LIDALED 226
Query: 312 LDDVDAVYTDQI 323
LDDV VYT +
Sbjct: 227 LDDVQDVYTSAV 238
>gi|354617063|ref|ZP_09034572.1| UPF0082 protein yeeN [Saccharomonospora paurometabolica YIM 90007]
gi|353218584|gb|EHB83314.1| UPF0082 protein yeeN [Saccharomonospora paurometabolica YIM 90007]
Length = 249
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 126/238 (52%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++++ K V A + GG +P +N L ++KAK+ VP+D +ER +R
Sbjct: 13 KKAALDAKRGKLFAKLVKNVEVAARTGGGDPEANPTLYDAIQKAKKNSVPQDNIERARRR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
+ E G + YE Y GV++++E LTD R+ + VR + GG +AD GSV
Sbjct: 73 GNGEEAGGADWQNITYEGYAPNGVAVLIECLTDNKNRAASEVRTALSRNGGTLADAGSVA 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R VV + D +D +L LDAGAE+V +D E ++++S +
Sbjct: 133 YLFNRRGVVLMPKNDLSEDDVLMAVLDAGAEEV-------NDLGES-----FEILSAPGD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ T L+EAG +E+ + S LP + +D E LI L + DDV VY +
Sbjct: 181 LVSVRTALQEAGYDYESADTS-FLPSVNVPLDAEGARKVFRLIDALEDCDDVQNVYAN 237
>gi|295397779|ref|ZP_06807848.1| glucose-1-phosphate adenylyltransferase [Aerococcus viridans ATCC
11563]
gi|294973991|gb|EFG49749.1| glucose-1-phosphate adenylyltransferase [Aerococcus viridans ATCC
11563]
Length = 243
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 111/201 (55%), Gaps = 15/201 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
SKI +KGA DAK+AK++ ++ +E+ A K GGP+P SN L V++KAK ++P D V
Sbjct: 8 SKIKNKKGATDAKRAKVFQKLSREIYVATKAGGPDPESNPSLRLVMDKAKAANMPNDNVN 67
Query: 141 RNIKRASEK-GQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I++ S E + E YE YG GG++I+VE LTD R++ +R + GG + +
Sbjct: 68 RAIEKGSSNTAGEDYDEITYEGYGPGGIAILVETLTDNTNRTLTNIRTIFNKNGGSLGES 127
Query: 200 GSVMFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV + F R V+ + D D+D++L ++AG ED+ ++ +++
Sbjct: 128 GSVAYMFDRQGYIVIEREGLDLDEDEMLMNVIEAGGEDMT------------TSDEVFEI 175
Query: 258 VSTSDNYTDITTKLREAGIPF 278
+ + ++TD+ L G
Sbjct: 176 STEASDFTDVRDALEAQGFKL 196
>gi|348589915|ref|YP_004874377.1| hypothetical protein TASI_0579 [Taylorella asinigenitalis MCE3]
gi|347973819|gb|AEP36354.1| hypothetical protein TASI_0579 [Taylorella asinigenitalis MCE3]
gi|399117154|emb|CCG19968.1| conserved hypothetical protein [Taylorella asinigenitalis 14/45]
Length = 243
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 132/244 (54%), Gaps = 16/244 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RKG QDAK+ K+++++ +E+ A + GGP+P +N L +KA ++PKD
Sbjct: 6 KWANIQHRKGRQDAKRGKIWTKIIREIQVAARAGGPDPDANPSLRLAWDKATAANMPKDN 65
Query: 139 VERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ R I+R + EK+ YE YG G +++VE +TD TR+V+ VR GG +
Sbjct: 66 IMRAIQRGAGGADGENYEKIRYEGYGPAGAAVIVECMTDNRTRTVSDVRHAFTKHGGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV F F+ + +D+ Q++DI L+AGA+DVI TDE E +V
Sbjct: 126 QDGSVAFMFKHCGQF-LFAPGSDESQIMDIGLEAGADDVI--------TDE---EGLIEV 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPIT-TIEVDDEAMELNKELIAKLLELDDVD 316
+Y + +AG+ E D + P+ T+ D+A+++ K ++ +L LDDV
Sbjct: 174 TCEPSDYMAVKKAFLDAGLTPEVD-AIIMKPLNETVLEGDDAVKMQK-ILDQLESLDDVQ 231
Query: 317 AVYT 320
V+T
Sbjct: 232 EVHT 235
>gi|33597014|ref|NP_884657.1| hypothetical protein BPP2422 [Bordetella parapertussis 12822]
gi|33600856|ref|NP_888416.1| hypothetical protein BB1871 [Bordetella bronchiseptica RB50]
gi|410472426|ref|YP_006895707.1| hypothetical protein BN117_1748 [Bordetella parapertussis Bpp5]
gi|412338957|ref|YP_006967712.1| hypothetical protein BN112_1644 [Bordetella bronchiseptica 253]
gi|427815440|ref|ZP_18982504.1| conserved hypothetical protein [Bordetella bronchiseptica 1289]
gi|49036533|sp|Q7WL78.1|Y1871_BORBR RecName: Full=Probable transcriptional regulatory protein BB1871
gi|49037284|sp|Q7W7T8.1|Y2422_BORPA RecName: Full=Probable transcriptional regulatory protein BPP2422
gi|33566465|emb|CAE37718.1| conserved hypothetical protein [Bordetella parapertussis]
gi|33568456|emb|CAE32368.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
gi|408442536|emb|CCJ49081.1| conserved hypothetical protein [Bordetella parapertussis Bpp5]
gi|408768791|emb|CCJ53561.1| conserved hypothetical protein [Bordetella bronchiseptica 253]
gi|410566440|emb|CCN24001.1| conserved hypothetical protein [Bordetella bronchiseptica 1289]
Length = 243
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 128/242 (52%), Gaps = 14/242 (5%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKG QDAK+ KL++++ +E+ A + GG +P SN L +KA + ++PKD ++
Sbjct: 8 ANIQHRKGRQDAKRGKLWTKIIREITVAARAGGADPDSNPRLRMAWDKATDANMPKDNIQ 67
Query: 141 RNIKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I+R A E++ E YE YG GG +++V+ +TD TR+VA VR GG +
Sbjct: 68 RAIQRGAGGADGESYEEVRYEGYGIGGAAVIVDCMTDNRTRTVAEVRHAFAKHGGNLGQE 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV F F+ + ++ +++ AL+AGAED+ TDE E +VV
Sbjct: 128 GSVAFMFKHCGQF-VFAPGTSEEAVMEAALEAGAEDIA--------TDE---EGVIEVVC 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
++T + AG+ E D G + + E+ E ++L+ L LDDV VY
Sbjct: 176 APADFTAVRQAFEAAGLKAEVD-GVVMKALNETELTGEDAVKMQKLLDVLESLDDVQEVY 234
Query: 320 TD 321
T+
Sbjct: 235 TN 236
>gi|399022063|ref|ZP_10724142.1| DNA-binding regulatory protein, YebC/PmpR family [Chryseobacterium
sp. CF314]
gi|398085430|gb|EJL76088.1| DNA-binding regulatory protein, YebC/PmpR family [Chryseobacterium
sp. CF314]
Length = 246
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 126/248 (50%), Gaps = 19/248 (7%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR K A+ K AK +S++GK++ AVK GG +P +N L ++ AK ++P
Sbjct: 1 MGRAFEYRKASKMARWDKMAKTFSKIGKDIALAVKAGGSDPEANPALRRCIQNAKGANMP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
KD VER IK+AS E + E YE YG GGV+ VE T+ TR+VA VR + G
Sbjct: 61 KDNVERAIKKASGTDAENYEEITYEGYGQGGVAFFVECTTNNTTRTVANVRAIFNKFDGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTD--ADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAER 253
+ G + F F R + N+ + D D +D GAED+ D+ E
Sbjct: 121 LGKNGELAFIFDRKGIFNLDLSQIKMDWDDFEMEMIDGGAEDI------------DKDEE 168
Query: 254 YYKVVSTSDNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLE 311
+ + +++ ++ KL E GI ++ +EL +P T EV+ E + N +++ + +
Sbjct: 169 EVMITTAFEDFGSLSHKLDELGIEVKS---AELQRIPNNTKEVNAEQFKANMKMLERFED 225
Query: 312 LDDVDAVY 319
DDV VY
Sbjct: 226 DDDVQNVY 233
>gi|237809453|ref|YP_002893893.1| hypothetical protein Tola_2714 [Tolumonas auensis DSM 9187]
gi|259646892|sp|C4LBN3.1|Y2714_TOLAT RecName: Full=Probable transcriptional regulatory protein Tola_2714
gi|237501714|gb|ACQ94307.1| protein of unknown function DUF28 [Tolumonas auensis DSM 9187]
Length = 247
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 140/242 (57%), Gaps = 19/242 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAK+ K++++M +E+ +A + GGP+ SN L A + A +++ +D V+
Sbjct: 8 ANIKHRKAAQDAKRGKMFTKMIREITTAARLGGPDGGSNPRLRAAVAAALSINMTRDTVD 67
Query: 141 RNIKRASEKGQEAFIEK-VYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IKR + +E VYE YG G +++VE +TD R+VA VR GG +
Sbjct: 68 RAIKRGAGGDDGVELETLVYEGYGPSGTAVMVECMTDNRNRTVAGVRHAFSKSGGALGTD 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F + + + FT AD+D L++ AL+AGA+DV +T++D + V +
Sbjct: 128 GSVAYLFTKKGI--LSFTSADEDALMEAALEAGADDV--------ETNDDGS---IDVYT 174
Query: 260 TSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVD-DEAMELNKELIAKLLELDDVDA 317
+ +++ + L AG F+ DN + ++P T ++++ D+A +L + LI L +LDDV
Sbjct: 175 SPNDFGTVLDALEAAG--FKPDNANVSMIPSTEVDLNADDAPKLLR-LIDMLEDLDDVQE 231
Query: 318 VY 319
VY
Sbjct: 232 VY 233
>gi|15677497|ref|NP_274653.1| hypothetical protein NMB1648 [Neisseria meningitidis MC58]
gi|385850810|ref|YP_005897325.1| hypothetical protein NMBM04240196_0588 [Neisseria meningitidis
M04-240196]
gi|385852754|ref|YP_005899268.1| hypothetical protein NMBH4476_0579 [Neisseria meningitidis H44/76]
gi|416160215|ref|ZP_11606105.1| hypothetical protein NMXN1568_0540 [Neisseria meningitidis N1568]
gi|416195771|ref|ZP_11617847.1| hypothetical protein NMBCU385_0543 [Neisseria meningitidis CU385]
gi|418288807|ref|ZP_12901237.1| hypothetical protein NMY233_1516 [Neisseria meningitidis NM233]
gi|418291075|ref|ZP_12903137.1| hypothetical protein NMY220_1536 [Neisseria meningitidis NM220]
gi|421551307|ref|ZP_15997302.1| hypothetical protein NMEN69166_1732 [Neisseria meningitidis 69166]
gi|421559671|ref|ZP_16005541.1| hypothetical protein NMEN92045_1644 [Neisseria meningitidis 92045]
gi|421561674|ref|ZP_16007513.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis NM2657]
gi|421568130|ref|ZP_16013858.1| hypothetical protein NMEN3001_1708 [Neisseria meningitidis NM3001]
gi|427827158|ref|ZP_18994201.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
gi|433465622|ref|ZP_20423096.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis NM422]
gi|433471982|ref|ZP_20429362.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 68094]
gi|433473041|ref|ZP_20430405.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 97021]
gi|433478154|ref|ZP_20435469.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 70012]
gi|433481590|ref|ZP_20438855.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 2006087]
gi|433483575|ref|ZP_20440805.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 2002038]
gi|433486787|ref|ZP_20443978.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 97014]
gi|433488825|ref|ZP_20445979.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis M13255]
gi|433491009|ref|ZP_20448126.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis NM418]
gi|433505491|ref|ZP_20462426.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 9506]
gi|433507638|ref|ZP_20464541.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 9757]
gi|433509804|ref|ZP_20466665.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 12888]
gi|433511838|ref|ZP_20468656.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 4119]
gi|433526643|ref|ZP_20483268.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 69096]
gi|433539446|ref|ZP_20495917.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 70030]
gi|33517103|sp|Q9JYC7.1|Y1648_NEIMB RecName: Full=Probable transcriptional regulatory protein NMB1648
gi|7226899|gb|AAF41997.1| conserved hypothetical protein [Neisseria meningitidis MC58]
gi|316984991|gb|EFV63945.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
gi|325128682|gb|EGC51548.1| hypothetical protein NMXN1568_0540 [Neisseria meningitidis N1568]
gi|325140707|gb|EGC63221.1| hypothetical protein NMBCU385_0543 [Neisseria meningitidis CU385]
gi|325199758|gb|ADY95213.1| hypothetical protein NMBH4476_0579 [Neisseria meningitidis H44/76]
gi|325205633|gb|ADZ01086.1| hypothetical protein NMBM04240196_0588 [Neisseria meningitidis
M04-240196]
gi|372200528|gb|EHP14593.1| hypothetical protein NMY220_1536 [Neisseria meningitidis NM220]
gi|372200982|gb|EHP14966.1| hypothetical protein NMY233_1516 [Neisseria meningitidis NM233]
gi|402328068|gb|EJU63449.1| hypothetical protein NMEN69166_1732 [Neisseria meningitidis 69166]
gi|402334788|gb|EJU70065.1| hypothetical protein NMEN92045_1644 [Neisseria meningitidis 92045]
gi|402336979|gb|EJU72234.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis NM2657]
gi|402342436|gb|EJU77601.1| hypothetical protein NMEN3001_1708 [Neisseria meningitidis NM3001]
gi|432201584|gb|ELK57663.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis NM422]
gi|432207023|gb|ELK63019.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 68094]
gi|432210642|gb|ELK66598.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 97021]
gi|432214081|gb|ELK69989.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 70012]
gi|432217421|gb|ELK73289.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 2006087]
gi|432221005|gb|ELK76821.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 97014]
gi|432221700|gb|ELK77505.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 2002038]
gi|432222010|gb|ELK77811.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis M13255]
gi|432226267|gb|ELK81999.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis NM418]
gi|432239807|gb|ELK95352.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 9506]
gi|432240184|gb|ELK95725.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 9757]
gi|432245514|gb|ELL00983.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 12888]
gi|432246090|gb|ELL01549.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 4119]
gi|432259275|gb|ELL14547.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 69096]
gi|432272203|gb|ELL27316.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 70030]
Length = 242
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 135/252 (53%), Gaps = 30/252 (11%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +K QDAK+ K+++R+ KE+ A + GG +P SN L LEKA E ++PKD V+
Sbjct: 8 ANIQHKKARQDAKRGKIFTRLIKEITVAARMGGGDPGSNPRLRLALEKAAENNMPKDNVQ 67
Query: 141 RNIKRASE--KGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMAD 198
R I + + +G E +IE YE YG GG +++V+ LTD TR+VA VR GG +
Sbjct: 68 RAIDKGTGNLEGVE-YIELRYEGYGIGGAALMVDCLTDNKTRTVADVRHAFTKNGGNLGT 126
Query: 199 PGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
G V F F + + D+D L++ AL+AGAEDV+ N+D + E V+
Sbjct: 127 DGCVAFNFVHQGYLVFE-PGVDEDALMEAALEAGAEDVV---TNDDGSIE--------VI 174
Query: 259 STSDNYTDITTKLREAG-------IPFETDNGSELLPITTIEVDDEAMELNKELIAKLLE 311
+ +++ + + L AG + N +EL D+A+++ K LI L +
Sbjct: 175 TAPNDWAGVKSALEAAGYKSVDGDVTMRAQNETEL-------SGDDAVKMQK-LIDALED 226
Query: 312 LDDVDAVYTDQI 323
LDDV VYT +
Sbjct: 227 LDDVQDVYTSAV 238
>gi|379059565|ref|ZP_09850091.1| hypothetical protein SproM1_15934 [Serinicoccus profundi MCCC
1A05965]
Length = 256
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 136/242 (56%), Gaps = 19/242 (7%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++++ K + A + GG +PT N L ++KAK+ VP D ++R +KR
Sbjct: 13 KKAAIDAKRGKLFAKLIKNIEVAARMGGGDPTGNPTLYDAIQKAKKSSVPNDNIDRAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S E G ++ VYE Y GGV++ +E LTD R+V VR + GG MAD GSV
Sbjct: 73 GSGAEAGGASYEALVYEGYAPGGVALYIECLTDNKNRAVMEVRTALTRNGGSMADSGSVA 132
Query: 204 FKF-RRARVVNIKFTD---ADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
+ F R+ +VV K + A +D LL+I L++GAE+V ED E ++V+S
Sbjct: 133 YLFERKGQVVVPKDQEGGAASEDSLLEIVLESGAEEV-----------EDAGES-FEVIS 180
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ + + T L++AG+ +++ + +P + +D + + +I L + DDV VY
Sbjct: 181 EAGDVVAVRTALQDAGMDYDSAEVT-FVPSMQVPLDADGAKKVIRVIDALEDCDDVQNVY 239
Query: 320 TD 321
++
Sbjct: 240 SN 241
>gi|399033905|ref|ZP_10732386.1| DNA-binding regulatory protein, YebC/PmpR family [Flavobacterium
sp. CF136]
gi|398067737|gb|EJL59216.1| DNA-binding regulatory protein, YebC/PmpR family [Flavobacterium
sp. CF136]
Length = 237
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 127/244 (52%), Gaps = 13/244 (5%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR GRK + + AK ++R+GK+++ AVK+GGPNP +N+ L AV++ AK ++P
Sbjct: 1 MGRAFEFRKGRKMKRWSAMAKTFTRIGKDIVMAVKEGGPNPDANSRLRAVIQNAKAANMP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
KD VER IK AS K + E ++E Y G++I++E +D R+VA +R C G
Sbjct: 61 KDNVERAIKNASNKDTANYKEILFEGYAPHGIAILIETASDNNNRTVANIRSYFNKCNGT 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
M GSV F F I + D ++L +D GAE+V E DED Y
Sbjct: 121 MGTQGSVEFMFDHTCNFRIAKGNLDPEELELELIDFGAEEVFE--------DEDGILIYA 172
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
S + + +L G+ +G E +P T E+ + + ++LI K+ E DDV
Sbjct: 173 PFGS----FGALQKELENRGLEI-LSSGFERIPQITKELTEAQIADVEKLIEKIEEDDDV 227
Query: 316 DAVY 319
VY
Sbjct: 228 MNVY 231
>gi|167037422|ref|YP_001665000.1| hypothetical protein Teth39_1009 [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167040089|ref|YP_001663074.1| hypothetical protein Teth514_1449 [Thermoanaerobacter sp. X514]
gi|256752594|ref|ZP_05493448.1| protein of unknown function DUF28 [Thermoanaerobacter ethanolicus
CCSD1]
gi|300914172|ref|ZP_07131488.1| protein of unknown function DUF28 [Thermoanaerobacter sp. X561]
gi|307724592|ref|YP_003904343.1| hypothetical protein Thet_1453 [Thermoanaerobacter sp. X513]
gi|320115835|ref|YP_004185994.1| hypothetical protein Thebr_1035 [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|226734048|sp|B0K951.1|Y1009_THEP3 RecName: Full=Probable transcriptional regulatory protein
Teth39_1009
gi|226734168|sp|B0K0L3.1|Y1449_THEPX RecName: Full=Probable transcriptional regulatory protein
Teth514_1449
gi|166854329|gb|ABY92738.1| protein of unknown function DUF28 [Thermoanaerobacter sp. X514]
gi|166856256|gb|ABY94664.1| protein of unknown function DUF28 [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|256748532|gb|EEU61582.1| protein of unknown function DUF28 [Thermoanaerobacter ethanolicus
CCSD1]
gi|300889107|gb|EFK84253.1| protein of unknown function DUF28 [Thermoanaerobacter sp. X561]
gi|307581653|gb|ADN55052.1| protein of unknown function DUF28 [Thermoanaerobacter sp. X513]
gi|319928926|gb|ADV79611.1| protein of unknown function DUF28 [Thermoanaerobacter brockii
subsp. finnii Ako-1]
Length = 246
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 134/243 (55%), Gaps = 15/243 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +K DAKK ++++++ K++I A K+GG +P +N+ L +EKAK ++P +
Sbjct: 6 KWANIKHKKEKMDAKKGRIFTKLTKDIIKAAKEGGGDPNTNSKLRDAIEKAKANNLPNEN 65
Query: 139 VERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
++R IK+ + E G E +YE YG G +I+VE LTD R+ +R + GG +
Sbjct: 66 IQRAIKKGTGELGGANLEEVIYEGYGPSGTAIIVEALTDNKNRTAGEIRHIFDRHGGSLG 125
Query: 198 DPGSVMFKFRRARVVNI-KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
GSV + F + ++ + K D+D+L +A+DAGA+D + ED ++
Sbjct: 126 AAGSVTWMFDKVGIIIVEKDNSIDEDELAMVAIDAGAQDF---------SAEDEE---FE 173
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
+++ N+ ++ + +AG ++ +LP TI++ E E ++LI KL E DDV
Sbjct: 174 IITEPSNFQEVKEAIEKAGYKI-SEAEVTMLPKNTIQLSPEDYEKFEKLIDKLEENDDVQ 232
Query: 317 AVY 319
VY
Sbjct: 233 NVY 235
>gi|157157475|ref|YP_001463329.1| hypothetical protein EcE24377A_2265 [Escherichia coli E24377A]
gi|157161469|ref|YP_001458787.1| hypothetical protein EcHS_A2106 [Escherichia coli HS]
gi|170019689|ref|YP_001724643.1| hypothetical protein EcolC_1660 [Escherichia coli ATCC 8739]
gi|187732518|ref|YP_001879657.1| hypothetical protein SbBS512_E0985 [Shigella boydii CDC 3083-94]
gi|191169381|ref|ZP_03031124.1| conserved hypothetical protein [Escherichia coli B7A]
gi|194430341|ref|ZP_03062831.1| conserved hypothetical protein [Escherichia coli B171]
gi|218554560|ref|YP_002387473.1| hypothetical protein ECIAI1_2065 [Escherichia coli IAI1]
gi|293446358|ref|ZP_06662780.1| hypothetical protein ECCG_00506 [Escherichia coli B088]
gi|300951621|ref|ZP_07165448.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
116-1]
gi|301020558|ref|ZP_07184639.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
196-1]
gi|307312435|ref|ZP_07592069.1| protein of unknown function DUF28 [Escherichia coli W]
gi|309795909|ref|ZP_07690322.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
145-7]
gi|331652792|ref|ZP_08353798.1| putative cytoplasmic protein [Escherichia coli M718]
gi|331677861|ref|ZP_08378536.1| putative cytoplasmic protein [Escherichia coli H591]
gi|332278851|ref|ZP_08391264.1| conserved hypothetical protein [Shigella sp. D9]
gi|378712585|ref|YP_005277478.1| hypothetical protein [Escherichia coli KO11FL]
gi|386609357|ref|YP_006124843.1| hypothetical protein ECW_m2155 [Escherichia coli W]
gi|386709835|ref|YP_006173556.1| hypothetical protein WFL_10560 [Escherichia coli W]
gi|387612545|ref|YP_006115661.1| hypothetical protein ETEC_2096 [Escherichia coli ETEC H10407]
gi|415797784|ref|ZP_11498189.1| hypothetical protein ECE128010_1870 [Escherichia coli E128010]
gi|415812149|ref|ZP_11504375.1| hypothetical protein ECLT68_2737 [Escherichia coli LT-68]
gi|416287275|ref|ZP_11648830.1| hypothetical protein SGB_04499 [Shigella boydii ATCC 9905]
gi|416301846|ref|ZP_11653159.1| hypothetical protein SGF_03666 [Shigella flexneri CDC 796-83]
gi|416345597|ref|ZP_11679079.1| hypothetical protein ECoL_04093 [Escherichia coli EC4100B]
gi|417133377|ref|ZP_11978162.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
5.0588]
gi|417145917|ref|ZP_11986875.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
1.2264]
gi|417154392|ref|ZP_11992521.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
96.0497]
gi|417159707|ref|ZP_11996735.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
99.0741]
gi|417237736|ref|ZP_12035467.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
9.0111]
gi|417248936|ref|ZP_12040721.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
4.0967]
gi|417265699|ref|ZP_12053068.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
3.3884]
gi|417581511|ref|ZP_12232313.1| hypothetical protein ECSTECB2F1_2172 [Escherichia coli STEC_B2F1]
gi|417597175|ref|ZP_12247822.1| hypothetical protein EC30301_2313 [Escherichia coli 3030-1]
gi|417602579|ref|ZP_12253149.1| hypothetical protein ECSTEC94C_2373 [Escherichia coli STEC_94C]
gi|417608571|ref|ZP_12259077.1| hypothetical protein ECSTECDG1313_2968 [Escherichia coli
STEC_DG131-3]
gi|417623891|ref|ZP_12274190.1| hypothetical protein ECSTECH18_2642 [Escherichia coli STEC_H.1.8]
gi|417629197|ref|ZP_12279435.1| hypothetical protein ECSTECMHI813_2116 [Escherichia coli
STEC_MHI813]
gi|417667425|ref|ZP_12316970.1| hypothetical protein ECSTECO31_2231 [Escherichia coli STEC_O31]
gi|417681552|ref|ZP_12330926.1| hypothetical protein SB359474_1356 [Shigella boydii 3594-74]
gi|419175548|ref|ZP_13719391.1| hypothetical protein ECDEC7B_2197 [Escherichia coli DEC7B]
gi|419278392|ref|ZP_13820642.1| hypothetical protein ECDEC10E_2347 [Escherichia coli DEC10E]
gi|419289940|ref|ZP_13832033.1| hypothetical protein ECDEC11A_2294 [Escherichia coli DEC11A]
gi|419295267|ref|ZP_13837313.1| hypothetical protein ECDEC11B_2343 [Escherichia coli DEC11B]
gi|419306829|ref|ZP_13848729.1| hypothetical protein ECDEC11D_2397 [Escherichia coli DEC11D]
gi|419311828|ref|ZP_13853690.1| hypothetical protein ECDEC11E_2362 [Escherichia coli DEC11E]
gi|419317114|ref|ZP_13858924.1| hypothetical protein ECDEC12A_2419 [Escherichia coli DEC12A]
gi|419323273|ref|ZP_13864973.1| hypothetical protein ECDEC12B_2764 [Escherichia coli DEC12B]
gi|419329263|ref|ZP_13870873.1| hypothetical protein ECDEC12C_2470 [Escherichia coli DEC12C]
gi|419334855|ref|ZP_13876391.1| hypothetical protein ECDEC12D_2617 [Escherichia coli DEC12D]
gi|419340276|ref|ZP_13881749.1| hypothetical protein ECDEC12E_2408 [Escherichia coli DEC12E]
gi|419370406|ref|ZP_13911526.1| hypothetical protein ECDEC14A_2152 [Escherichia coli DEC14A]
gi|419375863|ref|ZP_13916891.1| hypothetical protein ECDEC14B_2440 [Escherichia coli DEC14B]
gi|419381204|ref|ZP_13922159.1| hypothetical protein ECDEC14C_2360 [Escherichia coli DEC14C]
gi|419805830|ref|ZP_14330955.1| hypothetical protein ECAI27_25920 [Escherichia coli AI27]
gi|419809089|ref|ZP_14333975.1| hypothetical protein UWO_01035 [Escherichia coli O32:H37 str. P4]
gi|419863667|ref|ZP_14386173.1| hypothetical protein ECO9340_17362 [Escherichia coli O103:H25 str.
CVM9340]
gi|419922326|ref|ZP_14440346.1| hypothetical protein EC54115_05332 [Escherichia coli 541-15]
gi|420325746|ref|ZP_14827505.1| hypothetical protein SFCCH060_2068 [Shigella flexneri CCH060]
gi|420336639|ref|ZP_14838215.1| hypothetical protein SFK315_2389 [Shigella flexneri K-315]
gi|420351807|ref|ZP_14852982.1| hypothetical protein SB444474_0908 [Shigella boydii 4444-74]
gi|420391719|ref|ZP_14890972.1| hypothetical protein ECEPECC34262_2549 [Escherichia coli EPEC
C342-62]
gi|421682756|ref|ZP_16122560.1| hypothetical protein SF148580_2102 [Shigella flexneri 1485-80]
gi|421774411|ref|ZP_16211024.1| protein of unknown function DUF28 [Escherichia coli AD30]
gi|422774125|ref|ZP_16827781.1| yeeN [Escherichia coli H120]
gi|422786571|ref|ZP_16839310.1| hypothetical protein ERGG_01721 [Escherichia coli H489]
gi|422819137|ref|ZP_16867348.1| UPF0082 protein yeeN [Escherichia coli M919]
gi|422837168|ref|ZP_16885187.1| hypothetical protein ESOG_04788 [Escherichia coli E101]
gi|423705956|ref|ZP_17680339.1| UPF0082 protein yeeN [Escherichia coli B799]
gi|425288908|ref|ZP_18679768.1| hypothetical protein EC3006_2380 [Escherichia coli 3006]
gi|425422839|ref|ZP_18804007.1| hypothetical protein EC01288_2188 [Escherichia coli 0.1288]
gi|427805117|ref|ZP_18972184.1| hypothetical protein BN16_25301 [Escherichia coli chi7122]
gi|427809674|ref|ZP_18976739.1| hypothetical protein BN17_12811 [Escherichia coli]
gi|432370102|ref|ZP_19613190.1| hypothetical protein WCM_04053 [Escherichia coli KTE10]
gi|432450111|ref|ZP_19692377.1| hypothetical protein A13W_01057 [Escherichia coli KTE193]
gi|432481309|ref|ZP_19723267.1| hypothetical protein A15U_02429 [Escherichia coli KTE210]
gi|432627572|ref|ZP_19863550.1| hypothetical protein A1UQ_02413 [Escherichia coli KTE77]
gi|432637225|ref|ZP_19873101.1| hypothetical protein A1UY_02585 [Escherichia coli KTE81]
gi|432661209|ref|ZP_19896855.1| hypothetical protein A1WY_02627 [Escherichia coli KTE111]
gi|432675105|ref|ZP_19910569.1| hypothetical protein A1YU_01647 [Escherichia coli KTE142]
gi|432765380|ref|ZP_19999818.1| hypothetical protein A1S5_02944 [Escherichia coli KTE48]
gi|432806086|ref|ZP_20040024.1| hypothetical protein A1WA_01994 [Escherichia coli KTE91]
gi|432809631|ref|ZP_20043524.1| hypothetical protein A1WM_00789 [Escherichia coli KTE101]
gi|432934751|ref|ZP_20134188.1| hypothetical protein A13E_03345 [Escherichia coli KTE184]
gi|432947884|ref|ZP_20143040.1| hypothetical protein A153_02802 [Escherichia coli KTE196]
gi|432955419|ref|ZP_20147359.1| hypothetical protein A155_02641 [Escherichia coli KTE197]
gi|432968094|ref|ZP_20157009.1| hypothetical protein A15G_03198 [Escherichia coli KTE203]
gi|433033771|ref|ZP_20221493.1| hypothetical protein WIC_02340 [Escherichia coli KTE112]
gi|433043566|ref|ZP_20231064.1| hypothetical protein WIG_02095 [Escherichia coli KTE117]
gi|433092394|ref|ZP_20278666.1| hypothetical protein WK1_02031 [Escherichia coli KTE138]
gi|433194007|ref|ZP_20378004.1| hypothetical protein WGU_02325 [Escherichia coli KTE90]
gi|443618060|ref|YP_007381916.1| hypothetical protein APECO78_13725 [Escherichia coli APEC O78]
gi|157067149|gb|ABV06404.1| conserved hypothetical protein TIGR01033 [Escherichia coli HS]
gi|157079505|gb|ABV19213.1| conserved hypothetical protein TIGR01033 [Escherichia coli E24377A]
gi|169754617|gb|ACA77316.1| protein of unknown function DUF28 [Escherichia coli ATCC 8739]
gi|187429510|gb|ACD08784.1| conserved hypothetical protein [Shigella boydii CDC 3083-94]
gi|190900580|gb|EDV60386.1| conserved hypothetical protein [Escherichia coli B7A]
gi|194411613|gb|EDX27945.1| conserved hypothetical protein [Escherichia coli B171]
gi|218361328|emb|CAQ98914.1| conserved hypothetical protein [Escherichia coli IAI1]
gi|291323188|gb|EFE62616.1| hypothetical protein ECCG_00506 [Escherichia coli B088]
gi|299881814|gb|EFI90025.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
196-1]
gi|300449137|gb|EFK12757.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
116-1]
gi|306907606|gb|EFN38109.1| protein of unknown function DUF28 [Escherichia coli W]
gi|308120359|gb|EFO57621.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
145-7]
gi|309702281|emb|CBJ01599.1| conserved hypothetical protein [Escherichia coli ETEC H10407]
gi|315061274|gb|ADT75601.1| conserved protein [Escherichia coli W]
gi|320178376|gb|EFW53345.1| hypothetical protein SGB_04499 [Shigella boydii ATCC 9905]
gi|320184157|gb|EFW58974.1| hypothetical protein SGF_03666 [Shigella flexneri CDC 796-83]
gi|320198668|gb|EFW73268.1| hypothetical protein ECoL_04093 [Escherichia coli EC4100B]
gi|323161912|gb|EFZ47786.1| hypothetical protein ECE128010_1870 [Escherichia coli E128010]
gi|323172565|gb|EFZ58199.1| hypothetical protein ECLT68_2737 [Escherichia coli LT-68]
gi|323378146|gb|ADX50414.1| protein of unknown function DUF28 [Escherichia coli KO11FL]
gi|323948370|gb|EGB44356.1| yeeN [Escherichia coli H120]
gi|323961839|gb|EGB57439.1| hypothetical protein ERGG_01721 [Escherichia coli H489]
gi|331049548|gb|EGI21619.1| putative cytoplasmic protein [Escherichia coli M718]
gi|331074321|gb|EGI45641.1| putative cytoplasmic protein [Escherichia coli H591]
gi|332096537|gb|EGJ01531.1| hypothetical protein SB359474_1356 [Shigella boydii 3594-74]
gi|332101203|gb|EGJ04549.1| conserved hypothetical protein [Shigella sp. D9]
gi|345337282|gb|EGW69714.1| hypothetical protein ECSTECB2F1_2172 [Escherichia coli STEC_B2F1]
gi|345350245|gb|EGW82520.1| hypothetical protein ECSTEC94C_2373 [Escherichia coli STEC_94C]
gi|345354994|gb|EGW87208.1| hypothetical protein EC30301_2313 [Escherichia coli 3030-1]
gi|345359161|gb|EGW91340.1| hypothetical protein ECSTECDG1313_2968 [Escherichia coli
STEC_DG131-3]
gi|345373165|gb|EGX05126.1| hypothetical protein ECSTECMHI813_2116 [Escherichia coli
STEC_MHI813]
gi|345376852|gb|EGX08784.1| hypothetical protein ECSTECH18_2642 [Escherichia coli STEC_H.1.8]
gi|371604126|gb|EHN92759.1| hypothetical protein ESOG_04788 [Escherichia coli E101]
gi|378033864|gb|EHV96433.1| hypothetical protein ECDEC7B_2197 [Escherichia coli DEC7B]
gi|378128963|gb|EHW90342.1| hypothetical protein ECDEC10E_2347 [Escherichia coli DEC10E]
gi|378130348|gb|EHW91713.1| hypothetical protein ECDEC11A_2294 [Escherichia coli DEC11A]
gi|378142354|gb|EHX03556.1| hypothetical protein ECDEC11B_2343 [Escherichia coli DEC11B]
gi|378148816|gb|EHX09949.1| hypothetical protein ECDEC11D_2397 [Escherichia coli DEC11D]
gi|378157456|gb|EHX18487.1| hypothetical protein ECDEC11E_2362 [Escherichia coli DEC11E]
gi|378166350|gb|EHX27274.1| hypothetical protein ECDEC12B_2764 [Escherichia coli DEC12B]
gi|378170377|gb|EHX31260.1| hypothetical protein ECDEC12A_2419 [Escherichia coli DEC12A]
gi|378171363|gb|EHX32233.1| hypothetical protein ECDEC12C_2470 [Escherichia coli DEC12C]
gi|378183304|gb|EHX43949.1| hypothetical protein ECDEC12D_2617 [Escherichia coli DEC12D]
gi|378189608|gb|EHX50199.1| hypothetical protein ECDEC12E_2408 [Escherichia coli DEC12E]
gi|378217791|gb|EHX78066.1| hypothetical protein ECDEC14A_2152 [Escherichia coli DEC14A]
gi|378220560|gb|EHX80817.1| hypothetical protein ECDEC14B_2440 [Escherichia coli DEC14B]
gi|378228495|gb|EHX88651.1| hypothetical protein ECDEC14C_2360 [Escherichia coli DEC14C]
gi|383405527|gb|AFH11770.1| hypothetical protein WFL_10560 [Escherichia coli W]
gi|384471141|gb|EIE55227.1| hypothetical protein ECAI27_25920 [Escherichia coli AI27]
gi|385158019|gb|EIF20009.1| hypothetical protein UWO_01035 [Escherichia coli O32:H37 str. P4]
gi|385537323|gb|EIF84200.1| UPF0082 protein yeeN [Escherichia coli M919]
gi|385713348|gb|EIG50284.1| UPF0082 protein yeeN [Escherichia coli B799]
gi|386151231|gb|EIH02520.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
5.0588]
gi|386163369|gb|EIH25164.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
1.2264]
gi|386167481|gb|EIH33997.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
96.0497]
gi|386175158|gb|EIH47150.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
99.0741]
gi|386213514|gb|EII23939.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
9.0111]
gi|386220919|gb|EII37382.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
4.0967]
gi|386231692|gb|EII59039.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
3.3884]
gi|388341562|gb|EIL07657.1| hypothetical protein ECO9340_17362 [Escherichia coli O103:H25 str.
CVM9340]
gi|388396498|gb|EIL57598.1| hypothetical protein EC54115_05332 [Escherichia coli 541-15]
gi|391252175|gb|EIQ11375.1| hypothetical protein SFCCH060_2068 [Shigella flexneri CCH060]
gi|391262203|gb|EIQ21238.1| hypothetical protein SFK315_2389 [Shigella flexneri K-315]
gi|391286164|gb|EIQ44712.1| hypothetical protein SB444474_0908 [Shigella boydii 4444-74]
gi|391312400|gb|EIQ70008.1| hypothetical protein ECEPECC34262_2549 [Escherichia coli EPEC
C342-62]
gi|397784571|gb|EJK95424.1| hypothetical protein ECSTECO31_2231 [Escherichia coli STEC_O31]
gi|404340205|gb|EJZ66633.1| hypothetical protein SF148580_2102 [Shigella flexneri 1485-80]
gi|408214346|gb|EKI38784.1| hypothetical protein EC3006_2380 [Escherichia coli 3006]
gi|408344156|gb|EKJ58544.1| hypothetical protein EC01288_2188 [Escherichia coli 0.1288]
gi|408461041|gb|EKJ84819.1| protein of unknown function DUF28 [Escherichia coli AD30]
gi|412963299|emb|CCK47221.1| hypothetical protein BN16_25301 [Escherichia coli chi7122]
gi|412969853|emb|CCJ44494.1| hypothetical protein BN17_12811 [Escherichia coli]
gi|430885235|gb|ELC08161.1| hypothetical protein WCM_04053 [Escherichia coli KTE10]
gi|430980234|gb|ELC96996.1| hypothetical protein A13W_01057 [Escherichia coli KTE193]
gi|431007966|gb|ELD22777.1| hypothetical protein A15U_02429 [Escherichia coli KTE210]
gi|431163401|gb|ELE63822.1| hypothetical protein A1UQ_02413 [Escherichia coli KTE77]
gi|431172214|gb|ELE72365.1| hypothetical protein A1UY_02585 [Escherichia coli KTE81]
gi|431200325|gb|ELE99051.1| hypothetical protein A1WY_02627 [Escherichia coli KTE111]
gi|431214579|gb|ELF12334.1| hypothetical protein A1YU_01647 [Escherichia coli KTE142]
gi|431309555|gb|ELF97748.1| hypothetical protein A1S5_02944 [Escherichia coli KTE48]
gi|431355207|gb|ELG41921.1| hypothetical protein A1WA_01994 [Escherichia coli KTE91]
gi|431362399|gb|ELG48977.1| hypothetical protein A1WM_00789 [Escherichia coli KTE101]
gi|431452919|gb|ELH33329.1| hypothetical protein A13E_03345 [Escherichia coli KTE184]
gi|431457862|gb|ELH38199.1| hypothetical protein A153_02802 [Escherichia coli KTE196]
gi|431468090|gb|ELH48096.1| hypothetical protein A155_02641 [Escherichia coli KTE197]
gi|431471211|gb|ELH51104.1| hypothetical protein A15G_03198 [Escherichia coli KTE203]
gi|431552405|gb|ELI26366.1| hypothetical protein WIC_02340 [Escherichia coli KTE112]
gi|431556299|gb|ELI30086.1| hypothetical protein WIG_02095 [Escherichia coli KTE117]
gi|431610536|gb|ELI79826.1| hypothetical protein WK1_02031 [Escherichia coli KTE138]
gi|431716575|gb|ELJ80683.1| hypothetical protein WGU_02325 [Escherichia coli KTE90]
gi|443422568|gb|AGC87472.1| hypothetical protein APECO78_13725 [Escherichia coli APEC O78]
Length = 238
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 130/244 (53%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ +A K+G P+P NT L V+E+AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGATSKIYAKFGVEIYAAAKQGEPDPELNTSLKFVIERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A G E F++ YE +G G I+ E LT + R++A VR + GG
Sbjct: 61 KHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMIIAETLTSNVNRTIANVRTIFNKKGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV + F V I F +D D + +I L+A DV D T+E+ Y
Sbjct: 121 IGAAGSVSYMFDNTGV--IVFKGSDPDHIFEILLEAEV-DV------RDVTEEEGNIVIY 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+D + I L+ AGI + E++ + +E+ E +E+ + L+ L + DDV
Sbjct: 172 --TEPTDLHKGIAA-LKAAGITEFSTTELEMIAQSEVELSPEDLEIFEGLVDALEDDDDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QKVY 232
>gi|398338077|ref|ZP_10522782.1| hypothetical protein LkmesMB_22523 [Leptospira kmetyi serovar
Malaysia str. Bejo-Iso9]
Length = 249
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 132/237 (55%), Gaps = 13/237 (5%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A D+K+ +++R+GKE+ A K GG +P N L + KAK +++PKD +ER IK+
Sbjct: 13 KKDAIDSKRGAIFTRVGKEITVAAKMGGGDPEGNPRLRLAVLKAKSVNMPKDNIERAIKK 72
Query: 146 ASEKGQE-AFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMF 204
+ + + E +YE +G GG++I+V +TDK +R+ ++ ++ GG +A GSV
Sbjct: 73 GTGDLEGVTYEECLYECFGPGGIAIMVSAVTDKKSRTTPEIKSILTKLGGSLATSGSVSR 132
Query: 205 KFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNY 264
F + V+ ++ +D+L+D+A+ AGAEDVI NE D Y+V++ D+Y
Sbjct: 133 LFEKKGVIVLESAQIGEDELVDLAVGAGAEDVI----NEGDV--------YRVITAPDDY 180
Query: 265 TDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ L E G+ E + +++ D E E +LI +L DDV +V ++
Sbjct: 181 ETVLHALNEKGLKAEESEIRYIALVSSEIADKEVAEKVMKLIDQLDGHDDVTSVTSN 237
>gi|153816435|ref|ZP_01969103.1| hypothetical protein RUMTOR_02688 [Ruminococcus torques ATCC 27756]
gi|317500188|ref|ZP_07958420.1| hypothetical protein HMPREF1026_00362 [Lachnospiraceae bacterium
8_1_57FAA]
gi|331087584|ref|ZP_08336514.1| hypothetical protein HMPREF1025_00097 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336438006|ref|ZP_08617649.1| hypothetical protein HMPREF0990_00043 [Lachnospiraceae bacterium
1_1_57FAA]
gi|145846223|gb|EDK23141.1| DNA-binding regulatory protein, YebC/PmpR family [Ruminococcus
torques ATCC 27756]
gi|316898403|gb|EFV20442.1| hypothetical protein HMPREF1026_00362 [Lachnospiraceae bacterium
8_1_57FAA]
gi|330400455|gb|EGG80088.1| hypothetical protein HMPREF1025_00097 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336018381|gb|EGN48129.1| hypothetical protein HMPREF0990_00043 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 243
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 133/248 (53%), Gaps = 22/248 (8%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGG-PNPTSNTVLAAVLEKAKELDVPKD 137
+ + I +K DA K K+++++G+E+ AVK+GG P+P +N+ L V+ KAK ++P D
Sbjct: 6 KFANIKHKKEKNDAAKGKIFTKIGRELAVAVKEGGGPDPANNSRLRDVIAKAKSNNMPND 65
Query: 138 IVERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKM 196
+ERNIK+A+ +G E + YE YG G +I+V+ LTD R+ + VR G +
Sbjct: 66 TIERNIKKAAGEGAGDNYEHITYEGYGPNGTAIIVKTLTDNKNRTASNVRNAFTKGSGNV 125
Query: 197 ADPGSVMFKFRRARVVNIKFTDA--DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERY 254
PG V F F + + D D D+L+ +ALDAGAED E E
Sbjct: 126 GTPGCVSFMFDEKGQIFVAKEDCSMDADELMMLALDAGAEDFAEE------------EES 173
Query: 255 YKVVSTSDNYTDITTKLREAGIPFETDNGSE--LLPITTIEVDDEAMELNKELIAKLLEL 312
+++++ ++++ KL EAGI G+E ++P T +++ E N + LLE
Sbjct: 174 FEILTDPAAFSEVRLKLEEAGIVMA---GAEVTMIPQTYVDLTSEEDIKNIQKTLDLLEE 230
Query: 313 -DDVDAVY 319
DDV VY
Sbjct: 231 DDDVQDVY 238
>gi|33517052|sp|Q8RAR7.2|Y1135_THETN RecName: Full=Probable transcriptional regulatory protein TTE1135
Length = 243
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 136/243 (55%), Gaps = 15/243 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +K DAKK ++++++ K++I A K+GG +P +N+ L +E+AK ++P +
Sbjct: 6 KWANIKHKKEKMDAKKGRIFTKLTKDIIKAAKEGGGDPETNSKLKLAIERAKAFNLPSEN 65
Query: 139 VERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
++R IKR + E G E +YE YG G +I+VE LTD R+ +R + GG +
Sbjct: 66 IQRAIKRGTGELGGAKLEEVIYEGYGPAGTAIIVEALTDNKNRTAGEIRHIFDRNGGTLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
GSV + F + V+ ++ TD+ +++ L+ +A++AGAED D E ++
Sbjct: 126 AAGSVTWMFDKVGVIVVEKTDSINEEDLMMVAIEAGAEDF----------SADEGE--FE 173
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
+++ N+ ++ + +AG ++ +LP TI++ E E ++LI KL + DDV
Sbjct: 174 IITDPSNFQEVREAIEKAGYKI-SEAEITMLPKNTIKLSPEDYEKFEKLIDKLEDNDDVQ 232
Query: 317 AVY 319
VY
Sbjct: 233 NVY 235
>gi|424864685|ref|ZP_18288588.1| hypothetical protein NT02SARS_0353 [SAR86 cluster bacterium SAR86B]
gi|400759431|gb|EJP73613.1| hypothetical protein NT02SARS_0353 [SAR86 cluster bacterium SAR86B]
Length = 245
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 138/243 (56%), Gaps = 18/243 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK QDAK+ K+++++ +E+ A K GGP+P N L L+KA ++PKD +
Sbjct: 8 ANIKHRKARQDAKRGKVFTKIIREITVAAK-GGPDPADNPRLRLALDKANSENMPKDTIT 66
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I++ S G+ IE++ +E YG GG++I +E +TD R+VA VR GG +
Sbjct: 67 RAIQKGSGTGETGDIEEITFEGYGPGGIAIYIETVTDNRNRTVAEVRHAFSKFGGNLGTD 126
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F + ++++ + +++++D ++ A+D IE ED+ +Y++V+
Sbjct: 127 GSVSYLFNKIGIIHLN-KEFSEEEIMDFVIEYEADDFIE----EDE--------FYEIVT 173
Query: 260 TSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+ + I K++E I ++ N L P TT+ +D+E E +L+ + +LDDV V
Sbjct: 174 SPSSLHAIVDKMKENNI--DSINAELTLRPETTVLIDEEMSEKVIKLMNHMDDLDDVQEV 231
Query: 319 YTD 321
+T+
Sbjct: 232 HTN 234
>gi|300920206|ref|ZP_07136652.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
115-1]
gi|432534244|ref|ZP_19771220.1| hypothetical protein A193_02683 [Escherichia coli KTE234]
gi|300412708|gb|EFJ96018.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
115-1]
gi|431060471|gb|ELD69797.1| hypothetical protein A193_02683 [Escherichia coli KTE234]
Length = 238
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 130/244 (53%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ +A K+G P+P NT L V+E+AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGATSKIYAKFGVEIYAAAKQGEPDPELNTSLKFVIERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A G E F++ YE +G G I+ E LT + R++A VR + GG
Sbjct: 61 KHVIDKAIDKAKGGGDETFVQGRYEGFGPSGSMIIAETLTSNVNRTIANVRTIFNKKGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV + F V I F +D D + +I L+A DV D T+E+ Y
Sbjct: 121 IGAAGSVSYMFDNTGV--IVFKGSDPDHIFEILLEAEV-DV------RDVTEEEGNIVIY 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+D + I L+ AGI + E++ + +E+ E +E+ + L+ L + DDV
Sbjct: 172 --TEPTDLHKGIAA-LKAAGITEFSTTELEMIAQSEVELSPEDLEIFEGLVDALEDDDDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QKVY 232
>gi|255654844|ref|ZP_05400253.1| hypothetical protein CdifQCD-2_03907 [Clostridium difficile
QCD-23m63]
gi|296449587|ref|ZP_06891364.1| glucose-1-phosphate adenylyltransferase [Clostridium difficile
NAP08]
gi|296878090|ref|ZP_06902105.1| glucose-1-phosphate adenylyltransferase [Clostridium difficile
NAP07]
gi|296261651|gb|EFH08469.1| glucose-1-phosphate adenylyltransferase [Clostridium difficile
NAP08]
gi|296430843|gb|EFH16675.1| glucose-1-phosphate adenylyltransferase [Clostridium difficile
NAP07]
Length = 239
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 133/246 (54%), Gaps = 15/246 (6%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR + I RKG QDA++AK++++ + + A K GG +P N L +EKAK ++P
Sbjct: 1 MGRIGN-IINRKGKQDAQRAKIFTKHARAIAVAAKDGGADPEYNAALKTAIEKAKADNMP 59
Query: 136 KDIVER-NIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGG 194
D ++R K A E + VYE YG GGV+++VE LTD R+ VR GG
Sbjct: 60 NDNIDRAIAKGAGAGAGEDYETIVYEGYGPGGVAVIVETLTDNKNRTAGNVRYYFDKNGG 119
Query: 195 KMADPGSVMFKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAER 253
+ G V F F + + + D +++L+D+AL+AGAED I T+ED
Sbjct: 120 NLGTSGCVSFMFDKKGQILVGLGDGVSEEELMDVALEAGAEDFI--------TEEDG--- 168
Query: 254 YYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELD 313
Y++++T ++++ + +L+ G F + + + TT+ ++ +++ +L+ L E D
Sbjct: 169 -YEIITTPEDFSSVRDELKAKGYEFISADVKMIPQTTTVLTEESHLKMMNKLVDMLEEDD 227
Query: 314 DVDAVY 319
DV +Y
Sbjct: 228 DVQDIY 233
>gi|300900134|ref|ZP_07118327.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
198-1]
gi|422375277|ref|ZP_16455544.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS 60-1]
gi|300356348|gb|EFJ72218.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
198-1]
gi|324013410|gb|EGB82629.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS 60-1]
Length = 238
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 131/244 (53%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ +A K+G P+P NT L V+E+AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGATSKIYAKFGVEIYAAAKQGEPDPELNTSLKFVIERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A G E F++ YE +G G I+ E LT + R++A VR ++ GG
Sbjct: 61 KHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMIIAETLTSNVNRTIANVRTILNKKGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV + F V+ K TD D + +I L+A DV D T+E+ Y
Sbjct: 121 IGAAGSVSYMFDNTGVIVFKGTDP--DHIFEILLEAEV-DV------RDVTEEEGNIVIY 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+D + I L+ AGI + E++ + +E+ E +E+ + L+ L + DDV
Sbjct: 172 --TEPTDLHKGIAA-LKAAGITEFSTTELEMIAQSEVELSPEDLEIFEGLVDALEDDDDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QKVY 232
>gi|194468352|ref|ZP_03074338.1| protein of unknown function DUF28 [Lactobacillus reuteri 100-23]
gi|194453205|gb|EDX42103.1| protein of unknown function DUF28 [Lactobacillus reuteri 100-23]
Length = 248
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/239 (35%), Positives = 127/239 (53%), Gaps = 15/239 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +++ A K G P+P +N L V++KA ++PK ++R
Sbjct: 10 IQGRKNAQDAKRGKIFQKISRDLYQAAKAGDPDPANNAQLRLVIDKAHAANMPKKNIDRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
I +AS G F E YE YG GGV+++V LTD R+ +AVR GG + GSV
Sbjct: 70 IAKASGIGGAKFEEVTYEGYGPGGVAVMVSALTDNKNRTASAVRSAFSHSGGSLGASGSV 129
Query: 203 MFKFRRARVVNIKFTDADK--DQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+ F R ++ I D DK D +L ALDAGAED+ E +++ +
Sbjct: 130 SYMFDRKGLIEILRDDLDKSEDDMLMDALDAGAEDM------------KATEEKFQIFTD 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
N TD+ L+E G +T + ++P EV + + + LI +L E DDV +Y
Sbjct: 178 PSNMTDVRDALQEQGYELDTAEVT-MIPQNRTEVPADKAKQYRHLIDELTENDDVADIY 235
>gi|375084727|ref|ZP_09731586.1| YebC/PmpR family DNA-binding regulatory protein [Megamonas
funiformis YIT 11815]
gi|374567862|gb|EHR39061.1| YebC/PmpR family DNA-binding regulatory protein [Megamonas
funiformis YIT 11815]
Length = 243
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 137/247 (55%), Gaps = 23/247 (9%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +KGA DA +AK+ +++G+E+ AV+ GG +PT N L L KAK ++PKD
Sbjct: 8 ANIKRKKGANDAIRAKMTTKIGREITIAVRMGGADPTGNMRLKLALSKAKSNNIPKD--- 64
Query: 141 RNIKRASEKGQEA-----FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
NI RA +KG A + E +YE YG G ++++EV+TD R+ A +R + GG
Sbjct: 65 -NINRAIQKGLGASDGSNYEELIYEGYGPAGSAVMLEVMTDNRNRTAADIRHLFSKYGGN 123
Query: 196 MADPGSVMFKF-RRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERY 254
+ + G V + F ++A V K D++ L+ IALDAGAED EDD+
Sbjct: 124 LGETGCVGWMFHKKAIFVVDKEAFDDEESLMMIALDAGAEDFKA----EDDS-------- 171
Query: 255 YKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDD 314
+++ + +++ I+ L E I ++ ++P TT++V+ + E + LI L E DD
Sbjct: 172 FEITAAPEDFDAISQALEENNIE-TVESEITMIPDTTVKVEGKDAEKMQTLIDMLEEHDD 230
Query: 315 VDAVYTD 321
V VY++
Sbjct: 231 VQNVYSN 237
>gi|241889196|ref|ZP_04776499.1| conserved hypothetical protein [Gemella haemolysans ATCC 10379]
gi|329768327|ref|ZP_08259823.1| hypothetical protein HMPREF0428_01520 [Gemella haemolysans M341]
gi|241864033|gb|EER68412.1| conserved hypothetical protein [Gemella haemolysans ATCC 10379]
gi|328837202|gb|EGF86840.1| hypothetical protein HMPREF0428_01520 [Gemella haemolysans M341]
Length = 239
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 132/247 (53%), Gaps = 18/247 (7%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+DA +K+Y++ G+E+ A K G P+P SN L VLE+AK VP
Sbjct: 1 MGRKWNNIKEKKAAKDANTSKIYAKFGREIYQAAKTGEPDPESNRNLKVVLERAKTYRVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K+I++R I++A +E + E YE +G G ++++ LT+ + R+ A VR + GG
Sbjct: 61 KNIIDRAIEKAKGGSEENYDELRYEGFGVSGTMVIIDTLTNNVNRTAAEVRTALGKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDA--GAEDVIEPPVNEDDTDEDRAER 253
+ GSV + F V+ ++ A D+LL+I ++A A D+IE ED
Sbjct: 121 LGVTGSVNYMFDNTAVIGVEGKSA--DELLEILMEADIDARDIIE---------EDELTL 169
Query: 254 YYKVVSTSDNYTDITTKLREAGI-PFETDNGSELLPITTIEVDDEAMELNKELIAKLLEL 312
Y +N+ +I L+ AGI FE S ++P + + +E + ++ L +
Sbjct: 170 VY---GEPENFHEIQEALKAAGIEEFEVAEIS-MIPQNEVTLSEEDKAKFERMLEMLDDC 225
Query: 313 DDVDAVY 319
+DV VY
Sbjct: 226 EDVQQVY 232
>gi|291300122|ref|YP_003511400.1| hypothetical protein Snas_2629 [Stackebrandtia nassauensis DSM
44728]
gi|290569342|gb|ADD42307.1| protein of unknown function DUF28 [Stackebrandtia nassauensis DSM
44728]
Length = 251
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 131/239 (54%), Gaps = 16/239 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++++ K V A + GG +P N L ++KAK+ VP D ++R +KR
Sbjct: 13 KKAAIDAKRGKLFAKLIKNVEVAARTGGGDPDGNPTLYDAIQKAKKNSVPNDNIDRAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S + G + +YE Y GGV++++E LTD R+ A VR + GG++ADPGSV
Sbjct: 73 GSGADGGGVDYQTIMYEGYAPGGVAVLIECLTDNRNRAAAEVRTALTRNGGQLADPGSVA 132
Query: 204 FKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
+ F R VV + TD +D +L LDAGAE+V D E ++V+S +
Sbjct: 133 YNFNRKGVVIVPKTDGLTEDDVLMAVLDAGAEEV-----------NDLGES-FEVISEAT 180
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ + T L EAG +E+ S +P T+ ++++ ++I L + DDV V+ +
Sbjct: 181 DLVAVRTALVEAGNDYESAEAS-FVPSVTVPLEEDGARKILKVIEALEDSDDVQNVWAN 238
>gi|160880639|ref|YP_001559607.1| hypothetical protein Cphy_2507 [Clostridium phytofermentans ISDg]
gi|189039704|sp|A9KMB4.1|Y2507_CLOPH RecName: Full=Probable transcriptional regulatory protein Cphy_2507
gi|160429305|gb|ABX42868.1| protein of unknown function DUF28 [Clostridium phytofermentans
ISDg]
Length = 242
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 123/220 (55%), Gaps = 16/220 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +K DA K K+++R+G+E+ AVK+GGP+P +N L ++ KAK ++P D ++
Sbjct: 8 ANIKHKKEKNDATKGKIFTRLGREIAVAVKEGGPDPNNNNKLKDIVAKAKANNMPNDTID 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R+IK+A+ +G E V YE YG G +I+VE LTD R+ A VR G +
Sbjct: 68 RSIKKAAGEGNAVNYEFVTYEGYGPSGTAIIVEALTDNKNRTAANVRNAFTKGNGSVGTQ 127
Query: 200 GSV--MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G V MF + +++ + D D L+ +ALDAGA D E EDD+ ++V
Sbjct: 128 GCVSYMFDQKGQIIIDKEECDMASDDLMMLALDAGASDFNE----EDDS--------FEV 175
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDE 297
++ D+++ + L +AG+P + ++P T +E+ DE
Sbjct: 176 LTEPDDFSVVRETLEKAGVPMMQAEVT-MIPQTWVELSDE 214
>gi|306825895|ref|ZP_07459234.1| protein of hypothetical function DUF28 [Streptococcus sp. oral
taxon 071 str. 73H25AP]
gi|304432256|gb|EFM35233.1| protein of hypothetical function DUF28 [Streptococcus sp. oral
taxon 071 str. 73H25AP]
Length = 238
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 126/249 (50%), Gaps = 18/249 (7%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ A KKG P+P SNT L V+++AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGANSKVYAKFGVEIYVAAKKGEPDPESNTALKFVIDRAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A E F E YE +G G ++V+ LT + R+ A VR GG
Sbjct: 61 KHVIDKAIDKAKGNTDETFTEGRYEGFGPNGSMLIVDTLTSNVNRTAANVRAAFGKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
M GSV + F V I F D D + ++ L+A D D D E
Sbjct: 121 MGASGSVSYLFDNKGV--IVFAGDDADAIFELLLEA-------------DIDVDDVEAEE 165
Query: 256 KVVSTSDNYTDI---TTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLEL 312
++ TD+ LRE+GI E++P + +E+ E +E ++L + L +
Sbjct: 166 GTITVYTAPTDLHKAIVALRESGIEEFQVTELEMIPQSEVELSGEDLETFEKLYSVLEDD 225
Query: 313 DDVDAVYTD 321
+DV +YT+
Sbjct: 226 EDVQKIYTN 234
>gi|432894836|ref|ZP_20106657.1| hypothetical protein A31K_03804 [Escherichia coli KTE165]
gi|92110333|emb|CAJ87601.1| hypothetical protein eco2035 [Escherichia coli]
gi|431422749|gb|ELH04941.1| hypothetical protein A31K_03804 [Escherichia coli KTE165]
Length = 238
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 130/244 (53%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ +A K+G P+P NT L V+E+AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGATSKIYAKFGVEIYAAAKQGEPDPELNTSLKFVIERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A G E F++ YE +G G I+ E LT + R++A VR + GG
Sbjct: 61 KHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMIIAETLTSNVNRTIANVRTIFNKKGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV + F V+ K TD D + +I L+A DV D T+E+ Y
Sbjct: 121 IGAAGSVSYMFDNTGVIVFKGTDP--DHIFEILLEAEV-DV------RDVTEEEGNIVIY 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+D + I L+ AGI + E++ + +E+ E +E+ + L+ L + DDV
Sbjct: 172 --TEPTDLHKGIAA-LKSAGITEFSTTELEMIAQSEVELSPEDLEIFEGLVDALEDDDDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QKVY 232
>gi|414084375|ref|YP_006993083.1| hypothetical protein BN424_2328 [Carnobacterium maltaromaticum
LMA28]
gi|412997959|emb|CCO11768.1| conserved hypothetical protein [Carnobacterium maltaromaticum
LMA28]
Length = 241
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 129/242 (53%), Gaps = 16/242 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
S I GRK AQD K+ +++ ++ +E+ AVK GGP+P++N L +++KAK ++P D V+
Sbjct: 8 SNIQGRKNAQDTKRGQIFQKISREIYMAVKSGGPDPSTNPQLRMMMDKAKSANMPNDNVK 67
Query: 141 RNIKRASEKGQ-EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I + S+ G+ E + E YE YG G++++V LTD R+ VR GG + +
Sbjct: 68 RAIAKGSQSGEGENYEEITYEGYGPNGIAVLVHTLTDNRNRTGTNVRVAFNKNGGSLGET 127
Query: 200 GSVMFKFRRARVVNIKFTD--ADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV + F R + I+ D D+D +L L+AG ED+ + ++ +++
Sbjct: 128 GSVSYMFDRKGYLAIERRDLAVDEDTMLMNVLEAGGEDM------------ETSDEVFEI 175
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ ++ + L +G + ++P TT E+ + L + ++ KL E DDV
Sbjct: 176 YTEPSDFISVRDALEASGYKLAQAEIT-MVPQTTNELPADKRALFQTMLDKLEEDDDVSE 234
Query: 318 VY 319
V+
Sbjct: 235 VF 236
>gi|260654959|ref|ZP_05860447.1| glucose-1-phosphate adenylyltransferase [Jonquetella anthropi E3_33
E1]
gi|424844819|ref|ZP_18269430.1| DNA-binding regulatory protein, YebC/PmpR family [Jonquetella
anthropi DSM 22815]
gi|260630274|gb|EEX48468.1| glucose-1-phosphate adenylyltransferase [Jonquetella anthropi E3_33
E1]
gi|363986257|gb|EHM13087.1| DNA-binding regulatory protein, YebC/PmpR family [Jonquetella
anthropi DSM 22815]
Length = 251
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 137/247 (55%), Gaps = 24/247 (9%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAK+ L+ ++ K +I A K GG +P N L A +++AK VP ++
Sbjct: 8 ANIKHRKAAQDAKRGNLFQKLVKAIIIAAKDGGGDPAMNVRLKAAIDRAKAASVPASNID 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I+R + + + A E++ YE YG GV++VV VLTD R+ +R +++ GG M
Sbjct: 68 RAIQRGTGEIEGAMYEELTYEGYGVEGVALVVSVLTDNRNRTTPEIRAMLEHNGGTMGTS 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSVM+ F R + I+ D+D+LL+ AL+AGA+DV + +ED A V +
Sbjct: 128 GSVMWMFDRKGQITIE-GKVDEDELLNAALEAGADDV--------EVEEDSA----LVTT 174
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNK-ELIAKLLEL----DD 314
+ +D+ L++AG T+ L+P TT+ + E+NK + KL++L DD
Sbjct: 175 DPASLSDVAESLKKAGYNV-TEAEQPLVPKTTVTIS----EVNKARKLMKLIDLLEGHDD 229
Query: 315 VDAVYTD 321
V VY +
Sbjct: 230 VQDVYAN 236
>gi|59801645|ref|YP_208357.1| hypothetical protein NGO1291 [Neisseria gonorrhoeae FA 1090]
gi|240014539|ref|ZP_04721452.1| hypothetical protein NgonD_07819 [Neisseria gonorrhoeae DGI18]
gi|240121061|ref|ZP_04734023.1| hypothetical protein NgonPI_04689 [Neisseria gonorrhoeae PID24-1]
gi|254494085|ref|ZP_05107256.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268597527|ref|ZP_06131694.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|268604057|ref|ZP_06138224.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268682516|ref|ZP_06149378.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268686958|ref|ZP_06153820.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|291043418|ref|ZP_06569139.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|293398720|ref|ZP_06642896.1| conserved hypothetical protein [Neisseria gonorrhoeae F62]
gi|67462013|sp|Q5F792.1|Y1291_NEIG1 RecName: Full=Probable transcriptional regulatory protein NGO1291
gi|59718540|gb|AAW89945.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
gi|226513125|gb|EEH62470.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268551315|gb|EEZ46334.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|268588188|gb|EEZ52864.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268622800|gb|EEZ55200.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268627242|gb|EEZ59642.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|291012654|gb|EFE04639.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|291610860|gb|EFF39959.1| conserved hypothetical protein [Neisseria gonorrhoeae F62]
Length = 242
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/252 (34%), Positives = 136/252 (53%), Gaps = 30/252 (11%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +K QDAK+ K+++R+ KE+ A + GG +P +N L LEKA E ++PKD V+
Sbjct: 8 ANIQHKKARQDAKRGKIFTRLIKEITVAARMGGGDPGANPRLRLALEKAAENNMPKDNVQ 67
Query: 141 RNIKRASE--KGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMAD 198
R I + + +G E +IE YE YG GG +++V+ LTD TR+VA VR GG +
Sbjct: 68 RAIDKGTGNLEGVE-YIELRYEGYGIGGAALMVDCLTDNKTRTVADVRHAFTKNGGNLGT 126
Query: 199 PGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
G V F F + + D+D+L++ AL+AGAEDV+ N+D + E V+
Sbjct: 127 DGCVAFNFVHQGYLVFE-PGVDEDELMEAALEAGAEDVV---TNDDGSIE--------VI 174
Query: 259 STSDNYTDITTKLREAG-------IPFETDNGSELLPITTIEVDDEAMELNKELIAKLLE 311
+ +++ + + L AG + N +EL D+A+++ K LI L +
Sbjct: 175 TAPNDWAGVKSALEAAGYKSVDGDVTMRAQNETEL-------SGDDAVKMQK-LIDALED 226
Query: 312 LDDVDAVYTDQI 323
LDDV VYT +
Sbjct: 227 LDDVQDVYTSAV 238
>gi|359430500|ref|ZP_09221507.1| hypothetical protein ACT4_042_00110 [Acinetobacter sp. NBRC 100985]
gi|358234043|dbj|GAB03046.1| hypothetical protein ACT4_042_00110 [Acinetobacter sp. NBRC 100985]
Length = 249
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 141/246 (57%), Gaps = 22/246 (8%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK QDA + K++++ +E+++A + GGP+ SN L AV+EKA +++ +D +
Sbjct: 8 ANIKHRKAKQDASRGKVFTKYIREIVTAARLGGPDAASNPRLRAVVEKALSVNMTRDTIN 67
Query: 141 RNIKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I+R A + + E YE YG GGV+++VE +TD + R+V VR G +
Sbjct: 68 RAIQRGAGGEDNDDLKEVTYEGYGVGGVAVIVETMTDNLNRTVPDVRHCFSKTNGNLGTN 127
Query: 200 GSVMFKFRRARVVNIKFTDAD-KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
GSV + F + I F D +D+++++AL+AGA+D+ + DED V+
Sbjct: 128 GSVAYLFTKRG--EISFEDVSLEDKVMEVALEAGADDI--------EIDEDS----ILVI 173
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELL-PITTIEVD--DEAMELNKELIAKLLELDDV 315
++ +++ D+ L AG+ ++DN ++ P T E++ D+A ++ K +I L +LDDV
Sbjct: 174 TSPESFGDVQDALTAAGL--KSDNAEVVMSPSTKAEINDIDQAKQIMK-MIDMLEDLDDV 230
Query: 316 DAVYTD 321
VYT+
Sbjct: 231 QNVYTN 236
>gi|357404397|ref|YP_004916321.1| hypothetical protein MEALZ_1033 [Methylomicrobium alcaliphilum 20Z]
gi|351717062|emb|CCE22727.1| conserved hypothetical protein [Methylomicrobium alcaliphilum 20Z]
Length = 250
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/246 (34%), Positives = 137/246 (55%), Gaps = 22/246 (8%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK QDAK+ K++++M +E+ A K GG +P SN L ++KA ++ +D ++
Sbjct: 8 ANIKHRKAGQDAKRGKIFTKMIREISVAAKAGGGDPASNPTLRTAIDKALGANMKRDTID 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
IK+A+ + E+V YE YG GV+I+V+ LTD R+V VR GG +
Sbjct: 68 NTIKKATGALEAENYEEVRYEGYGPAGVAIMVDCLTDNRNRTVGEVRHAFSKAGGNLGTD 127
Query: 200 GSVMFKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
GSV + F + + I F D+ D+D +++ AL+AGA+DV+ NED + V+
Sbjct: 128 GSVAYLFNKVGI--ISFPDSVDEDAVIEAALEAGADDVV---TNEDGS--------IDVI 174
Query: 259 STSDNYTDITTKLREAGIP--FETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+ ++Y D+ +EA I F+ +N + P T+ E++ E E LI +L +LDDV
Sbjct: 175 TAPESYMDV----KEALIAKDFKPENSEITMQPSTSAELNAEEAEKLMRLIDRLEDLDDV 230
Query: 316 DAVYTD 321
VY++
Sbjct: 231 QNVYSN 236
>gi|312866393|ref|ZP_07726611.1| DNA-binding regulatory protein, YebC/PmpR family [Streptococcus
downei F0415]
gi|311098087|gb|EFQ56313.1| DNA-binding regulatory protein, YebC/PmpR family [Streptococcus
downei F0415]
Length = 239
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 125/249 (50%), Gaps = 22/249 (8%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ +A K+G P+P SN+ L VLE+AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGANSKVYAKFGVEIYAAAKQGEPDPESNSTLKFVLERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A E F+E YE +G G I+V+ LT + R+ A VR GG
Sbjct: 61 KHVIDKAIDKAKGNTDETFVEGRYEGFGPNGSMIIVDTLTSNVNRTAANVRSAFGKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADK--DQLLDIALDAGAEDVIEPPVNEDDTDEDRAER 253
M GSV + F R V+ K DAD +QLL E D D D E
Sbjct: 121 MGASGSVSYMFDRKGVIVFKGDDADSIFEQLL-----------------EADVDVDDVEA 163
Query: 254 YYKVVSTSDNYTDI---TTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLL 310
++ TD+ LR G+ E++P + +++ E +E+ + LI L
Sbjct: 164 EDGSITVYTAPTDLHKGMEALRANGVEEFQVTELEMIPQSEVQLSGEDLEVFQGLIDVLE 223
Query: 311 ELDDVDAVY 319
+ +DV VY
Sbjct: 224 DDEDVQKVY 232
>gi|451942560|ref|YP_007463197.1| hypothetical protein BVwin_13340 [Bartonella vinsonii subsp.
berkhoffii str. Winnie]
gi|451901947|gb|AGF76409.1| hypothetical protein BVwin_13340 [Bartonella vinsonii subsp.
berkhoffii str. Winnie]
Length = 248
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 127/240 (52%), Gaps = 15/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++S++ +E+ A K+G P+P N L ++ AK +PKD +ER
Sbjct: 10 IMHRKGRQDAMRSKIFSKLAREITVAAKQGAPDPAMNPRLRLAVQNAKAQSMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+AS E + E YE YG GGV+++VE LTD R+ + VR GG + + GSV
Sbjct: 70 IKKASGNDVEHYDEVRYEGYGPGGVAVIVEALTDNRNRTASNVRAAFTKSGGALGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F+R + K D ++D A++AGAEDV E + + +
Sbjct: 130 SFMFQRIGEIIYKPEAGTADSIMDAAIEAGAEDV------------QLEETGHHITCAFE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELN-KELIAKLLELDDVDAVYTD 321
+ ++ +K+ EA + E ++ + +T+ DE L+ LI+ L E DDV VY +
Sbjct: 178 DIGEV-SKMLEAKLG-EAESIKTIWKASTLAPIDEEKALSVLRLISTLEEDDDVQNVYAN 235
>gi|296447689|ref|ZP_06889607.1| protein of unknown function DUF28 [Methylosinus trichosporium OB3b]
gi|296254830|gb|EFH01939.1| protein of unknown function DUF28 [Methylosinus trichosporium OB3b]
Length = 248
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 127/241 (52%), Gaps = 17/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I +KG QDA ++KL+S++ +E+ A K G P+P N L A + A+ ++PKD +ER
Sbjct: 10 IMHKKGKQDAIRSKLFSKLAREITVAAKMGLPDPNMNARLRAAVLAARAENMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+AS E + E YE Y GGV++++E LTD R+ +R GG +A+ G+V
Sbjct: 70 IKKASGADAENYDEVRYEGYAPGGVAVIIEALTDNRNRTAGEIRSYFTKAGGALAETGAV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R +V A +D +++ +++AGAEDV E ++V+++ +
Sbjct: 130 SFMFDRVGLVEFPRKAASEDAMMEASIEAGAEDVTA------------TEDSHEVITSVE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
D+ L F + L+ P T+ VDDEA E +LI L + DDV VY
Sbjct: 178 GLRDVAKALE---AKFGEPKKAALVWRPQNTVAVDDEAGEKIVKLIGALEDNDDVQNVYA 234
Query: 321 D 321
+
Sbjct: 235 N 235
>gi|418940872|ref|ZP_13494219.1| UPF0082 protein yeeN [Rhizobium sp. PDO1-076]
gi|375052412|gb|EHS48831.1| UPF0082 protein yeeN [Rhizobium sp. PDO1-076]
Length = 248
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 126/239 (52%), Gaps = 13/239 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QD ++K++S++ +E+ A K G P+PT N L ++ AK +PKD ++R
Sbjct: 10 IMHRKGKQDGIRSKMFSKLAREITVAAKVGLPDPTMNAALRLAVQNAKAQSMPKDNIDRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+AS E + YE YG GG +I+VE LTD R+ ++VR GG + + GSV
Sbjct: 70 IKKASGADAETYDAIRYEGYGPGGTAIIVEALTDNRNRTASSVRSTFTKAGGALGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F + K + D D++++ A++AGAEDV+ +DED + + +
Sbjct: 130 SFSFDHVGELTYKASVGDADKVMEAAIEAGAEDVV--------SDEDG----HTIYCAFE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ +++ L ET + P T+ VD++ +LI L + DDV VY++
Sbjct: 178 DMNEVSKALEPVLGEAETVK-AIWRPQNTVPVDEDKARSLMKLIDTLEDDDDVQNVYSN 235
>gi|168179567|ref|ZP_02614231.1| conserved hypothetical protein TIGR01033 [Clostridium botulinum
NCTC 2916]
gi|226950502|ref|YP_002805593.1| hypothetical protein CLM_3478 [Clostridium botulinum A2 str. Kyoto]
gi|387819330|ref|YP_005679677.1| hypothetical protein H04402_03145 [Clostridium botulinum H04402
065]
gi|254765055|sp|C1FKG4.1|Y3478_CLOBJ RecName: Full=Probable transcriptional regulatory protein CLM_3478
gi|182669605|gb|EDT81581.1| conserved hypothetical protein TIGR01033 [Clostridium botulinum
NCTC 2916]
gi|226844540|gb|ACO87206.1| conserved hypothetical protein TIGR01033 [Clostridium botulinum A2
str. Kyoto]
gi|322807374|emb|CBZ04948.1| hypothetical protein H04402_03145 [Clostridium botulinum H04402
065]
Length = 246
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 122/217 (56%), Gaps = 15/217 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I +KG DAK+ K+++++GKE++ AVK+GGP+ SN L V+ KAK ++P D +ER+
Sbjct: 10 IQAKKGKVDAKRGKIFTKIGKEIVVAVKQGGPSADSNPRLRDVIAKAKANNMPNDTIERS 69
Query: 143 IKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+AS + E + YE YG G++++V+VLTD RS VR GG + G
Sbjct: 70 IKKASGELNAVDYETITYEGYGPAGIAVLVDVLTDNKNRSAGNVRYAFTKQGGNLGSTGC 129
Query: 202 VMFKFR-RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
V F F+ + ++V K D+D+L+ +ALDAGAED + + Y V ++
Sbjct: 130 VSFMFQSKGQIVIEKKDGLDEDELMMMALDAGAEDF------------ESEDEVYAVTTS 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDE 297
+++ + L G+ F + +++P T +D+E
Sbjct: 178 QEDFGTVREALEAEGLEF-LEAEIKMVPDTYTAIDEE 213
>gi|395792857|ref|ZP_10472281.1| UPF0082 protein [Bartonella vinsonii subsp. arupensis Pm136co]
gi|423713511|ref|ZP_17687771.1| UPF0082 protein [Bartonella vinsonii subsp. arupensis OK-94-513]
gi|395423552|gb|EJF89747.1| UPF0082 protein [Bartonella vinsonii subsp. arupensis OK-94-513]
gi|395432414|gb|EJF98403.1| UPF0082 protein [Bartonella vinsonii subsp. arupensis Pm136co]
Length = 248
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 122/243 (50%), Gaps = 21/243 (8%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++S++ +E+ A K+G P+P N L ++ AK +PKD +ER
Sbjct: 10 IMHRKGRQDAMRSKIFSKLAREITVAAKQGAPDPAMNPRLRLAVQNAKAQSMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+AS E + E YE YG GGV+++VE LTD R+ + VR GG + + GSV
Sbjct: 70 IKKASGNDVEHYDEVRYEGYGPGGVAVIVEALTDNRNRTASNVRAAFTKSGGALGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F+R + K D ++D A++AGAEDV E + + +
Sbjct: 130 SFMFQRIGEIIYKPEAGTADSIMDAAIEAGAEDV------------QTEETGHHITCAFE 177
Query: 263 NYTDIT----TKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+ +++ KL EA S L PI D+E LI+ L E DDV V
Sbjct: 178 DIGEVSKMLEAKLGEAESIKTVWKASTLAPI-----DEEKALSVLRLISTLEEDDDVQNV 232
Query: 319 YTD 321
Y +
Sbjct: 233 YAN 235
>gi|395791849|ref|ZP_10471303.1| UPF0082 protein [Bartonella alsatica IBS 382]
gi|395407766|gb|EJF74400.1| UPF0082 protein [Bartonella alsatica IBS 382]
Length = 248
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 91/154 (59%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++S++ +E+ A K+G P+P N L ++ AK +PKD +ER
Sbjct: 10 IMHRKGRQDAIRSKIFSKLAREITVAAKQGAPDPAMNPRLRLAVQNAKAQSMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+AS E + E YE YG GGV+I+VE LTD R+ + VR GG + + GSV
Sbjct: 70 IKKASGNDVEHYDEVRYEGYGPGGVAIIVEALTDNRNRTASNVRAAFTKSGGALGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDV 236
F F R + K D ++D A++AGAEDV
Sbjct: 130 SFMFNRIGEIIYKTEAGTADSIMDAAIEAGAEDV 163
>gi|420100047|ref|ZP_14611244.1| hypothetical protein ECO9455_10129, partial [Escherichia coli
O111:H11 str. CVM9455]
gi|394421923|gb|EJE95349.1| hypothetical protein ECO9455_10129, partial [Escherichia coli
O111:H11 str. CVM9455]
Length = 293
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 126/235 (53%), Gaps = 15/235 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
RK AQDAK+ K+++++ +E+++A K GG +P +N L A ++KA ++ +D + R I R
Sbjct: 60 RKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAIDKALSNNMTRDTLNRAIAR 119
Query: 146 ASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMF 204
+A +E + YE YG GG +I++E L+D R+VA VR CGG + GSV +
Sbjct: 120 GVGGDDDANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTDGSVAY 179
Query: 205 KFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNY 264
F + V I F D+D +++ AL+AGAEDV V DD D V + +
Sbjct: 180 LFSKKGV--ISFEKGDEDTIMEAALEAGAEDV----VTYDDGAID-------VYTAWEEM 226
Query: 265 TDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ L AG+ ++ S ++P T ++D E LI L + DDV VY
Sbjct: 227 GKVRDALEAAGLKADSAEVS-MIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVY 280
>gi|384110140|ref|ZP_10010968.1| DNA-binding regulatory protein, YebC/PmpR family [Treponema sp.
JC4]
gi|383868306|gb|EID83977.1| DNA-binding regulatory protein, YebC/PmpR family [Treponema sp.
JC4]
Length = 247
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 126/235 (53%), Gaps = 16/235 (6%)
Query: 87 KGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRA 146
KG DAK+ K++++ KE+ A + GG +P SN L ++ KA+ ++PKD +ER IK+
Sbjct: 14 KGIADAKRGKIFTKFIKEISIAARMGGGDPNSNPRLRTIIIKARAANMPKDNIERAIKKG 73
Query: 147 S-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 205
+ E G ++ E VYE Y GGV+++VEVLTD R+ A +R + GG + GSV
Sbjct: 74 TGEDGATSYEELVYEGYAPGGVAVMVEVLTDNKNRAAADIRNIFTKNGGNLGTTGSVSRM 133
Query: 206 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 265
F+R + +D+++++AL+AGA+D+ VNED V ++ D +
Sbjct: 134 FQRKGTIEYDAEKVSEDEVMEVALEAGADDI----VNEDGV--------ITVTTSPDAFA 181
Query: 266 DITTKLREAGI-PFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ L E G D G L+P VD + +++I KL + DDV VY
Sbjct: 182 AVADALNEKGFESLSADVG--LVPDAYQPVDKDTAAKVQKMIDKLEDNDDVQNVY 234
>gi|125623119|ref|YP_001031602.1| hypothetical protein llmg_0242 [Lactococcus lactis subsp. cremoris
MG1363]
gi|389853444|ref|YP_006355688.1| hypothetical protein LLNZ_01250 [Lactococcus lactis subsp. cremoris
NZ9000]
gi|166228372|sp|A2RHW1.1|Y242_LACLM RecName: Full=Probable transcriptional regulatory protein llmg_0242
gi|124491927|emb|CAL96848.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris
MG1363]
gi|300069866|gb|ADJ59266.1| hypothetical protein LLNZ_01250 [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 238
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 128/246 (52%), Gaps = 16/246 (6%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ +A K+G P+P SN+ L V+E+AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGATSKVYAKFGVEIYAAAKQGEPDPESNSSLKFVIERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A G E F++ YE +G G ++ E LT + R++A VR GG
Sbjct: 61 KHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMVIAETLTSNVNRTIANVRTTFHKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ G+V + F V I F D D + +I LDA E D + E
Sbjct: 121 IGAAGAVSYMFDNTGV--IVFEGTDPDHIFEILLDA-----------EVDVRDVTEEEGN 167
Query: 256 KVVST--SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELD 313
VV T +D + I L+ AGI + E++ + +E+ E +E+ + L+ L + D
Sbjct: 168 IVVYTEPTDLHKGIAA-LKAAGITEFSTTELEMIAQSEVELSPEDLEIFEGLVDALEDDD 226
Query: 314 DVDAVY 319
DV VY
Sbjct: 227 DVQKVY 232
>gi|29833374|ref|NP_828008.1| hypothetical protein SAV_6832 [Streptomyces avermitilis MA-4680]
gi|33517123|sp|Q827T9.1|Y6832_STRAW RecName: Full=Probable transcriptional regulatory protein SAV_6832
gi|29610497|dbj|BAC74543.1| hypothetical protein SAV_6832 [Streptomyces avermitilis MA-4680]
Length = 250
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 129/238 (54%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K DAK+ KL+++M K + A + GG +P N L ++KAK+ VP ++ +KR
Sbjct: 13 KKAVIDAKRGKLFAKMIKNIEVAARTGGADPAGNPTLFDAIQKAKKSSVPNKNIDSAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
+ E G + +YE YG GV++++E LTD R+ + VR + GG MADPGSV
Sbjct: 73 GAGLEAGGADYETIMYEGYGPNGVAVLIECLTDNRNRAASDVRVAMTRNGGNMADPGSVS 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R VV + + +D +L LDAGAE+V D E ++VVS + +
Sbjct: 133 YLFNRKGVVIVPKGELSEDDVLGAVLDAGAEEV-----------NDLGES-FEVVSEATD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ T L++AGI +++ + + +P +E+D+E +LI L + DDV V+ +
Sbjct: 181 LVAVRTALQDAGIDYDSAD-ANFVPTMQVELDEEGARKIFKLIDALEDSDDVQNVFAN 237
>gi|16802414|ref|NP_463899.1| hypothetical protein lmo0369 [Listeria monocytogenes EGD-e]
gi|254828997|ref|ZP_05233684.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
gi|255025771|ref|ZP_05297757.1| hypothetical protein LmonocytFSL_04500 [Listeria monocytogenes FSL
J2-003]
gi|284800656|ref|YP_003412521.1| hypothetical protein LM5578_0403 [Listeria monocytogenes 08-5578]
gi|284993842|ref|YP_003415610.1| hypothetical protein LM5923_0402 [Listeria monocytogenes 08-5923]
gi|315280839|ref|ZP_07869624.1| hypothetical protein NT05LM_0512 [Listeria marthii FSL S4-120]
gi|386042708|ref|YP_005961513.1| hypothetical protein [Listeria monocytogenes 10403S]
gi|386049297|ref|YP_005967288.1| hypothetical protein [Listeria monocytogenes FSL R2-561]
gi|386052645|ref|YP_005970203.1| hypothetical protein [Listeria monocytogenes Finland 1998]
gi|404282801|ref|YP_006683698.1| hypothetical protein LMOSLCC2372_0371 [Listeria monocytogenes
SLCC2372]
gi|404409610|ref|YP_006695198.1| hypothetical protein LMOSLCC5850_0371 [Listeria monocytogenes
SLCC5850]
gi|404412462|ref|YP_006698049.1| hypothetical protein LMOSLCC7179_0356 [Listeria monocytogenes
SLCC7179]
gi|405757356|ref|YP_006686632.1| hypothetical protein LMOSLCC2479_0369 [Listeria monocytogenes
SLCC2479]
gi|33517072|sp|Q8Y9Z8.1|Y369_LISMO RecName: Full=Probable transcriptional regulatory protein lmo0369
gi|16409747|emb|CAC98448.1| lmo0369 [Listeria monocytogenes EGD-e]
gi|258601408|gb|EEW14733.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
gi|284056218|gb|ADB67159.1| hypothetical protein LM5578_0403 [Listeria monocytogenes 08-5578]
gi|284059309|gb|ADB70248.1| hypothetical protein LM5923_0402 [Listeria monocytogenes 08-5923]
gi|313615512|gb|EFR88872.1| hypothetical protein NT05LM_0512 [Listeria marthii FSL S4-120]
gi|345535942|gb|AEO05382.1| hypothetical protein LMRG_00061 [Listeria monocytogenes 10403S]
gi|346423143|gb|AEO24668.1| UPF0082 protein [Listeria monocytogenes FSL R2-561]
gi|346645296|gb|AEO37921.1| conserved hypothetical protein [Listeria monocytogenes Finland
1998]
gi|404229436|emb|CBY50840.1| hypothetical protein LMOSLCC5850_0371 [Listeria monocytogenes
SLCC5850]
gi|404232303|emb|CBY53706.1| hypothetical protein LMOSLCC2372_0371 [Listeria monocytogenes
SLCC2372]
gi|404235238|emb|CBY56640.1| hypothetical protein LMOSLCC2479_0369 [Listeria monocytogenes
SLCC2479]
gi|404238161|emb|CBY59562.1| hypothetical protein LMOSLCC7179_0356 [Listeria monocytogenes
SLCC7179]
Length = 239
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 130/244 (53%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K ++D +++Y++ G E+ A K G P+P SN L V+E+AK +VP
Sbjct: 1 MGRKWANIKEKKASKDKTNSRIYAKFGIEIYVAAKSGDPDPHSNQKLRFVIERAKTYNVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K I++R I++A G E + E YE +G G I+V+ LT+ + R+ + VR GG
Sbjct: 61 KHIIDRAIEKAKGTGDETYSELRYEGFGPNGSMIIVDALTNNVNRTASDVRAAYSKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
M GSV + F + ++ DA D+LL++ ++A DV D DED Y
Sbjct: 121 MGVSGSVAYMFDNTAIFGVEGKDA--DELLELLMEADI-DV------RDILDEDGQAIIY 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+ +++ + L+ AGI T E++P I++ E +E + LI L +L+DV
Sbjct: 172 ---AEPEDFHKVQEGLKAAGIEEFTVAEIEMIPQNDIQLSGEDLEKFERLIDALEDLEDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QKVY 232
>gi|42526995|ref|NP_972093.1| hypothetical protein TDE1487 [Treponema denticola ATCC 35405]
gi|422341989|ref|ZP_16422929.1| hypothetical protein HMPREF9353_01595 [Treponema denticola F0402]
gi|449102659|ref|ZP_21739407.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola AL-2]
gi|449107345|ref|ZP_21744001.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola ASLM]
gi|449109440|ref|ZP_21746074.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola ATCC 33520]
gi|449111952|ref|ZP_21748507.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola ATCC 33521]
gi|449113244|ref|ZP_21749759.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola ATCC 35404]
gi|449115833|ref|ZP_21752293.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola H-22]
gi|449120114|ref|ZP_21756500.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola H1-T]
gi|449122519|ref|ZP_21758852.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola MYR-T]
gi|449131250|ref|ZP_21767466.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola SP37]
gi|451969040|ref|ZP_21922269.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola US-Trep]
gi|49036513|sp|P62042.1|Y1487_TREDE RecName: Full=Probable transcriptional regulatory protein TDE_1487
gi|41817419|gb|AAS12004.1| conserved hypothetical protein TIGR01033 [Treponema denticola ATCC
35405]
gi|325474057|gb|EGC77245.1| hypothetical protein HMPREF9353_01595 [Treponema denticola F0402]
gi|448940083|gb|EMB20994.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola SP37]
gi|448947509|gb|EMB28353.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola MYR-T]
gi|448948258|gb|EMB29095.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola H1-T]
gi|448955319|gb|EMB36086.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola H-22]
gi|448956233|gb|EMB36994.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola ATCC 33521]
gi|448958683|gb|EMB39411.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola ATCC 33520]
gi|448960824|gb|EMB41533.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola ATCC 35404]
gi|448962590|gb|EMB43278.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola ASLM]
gi|448966248|gb|EMB46906.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola AL-2]
gi|451702212|gb|EMD56641.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola US-Trep]
Length = 247
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 131/237 (55%), Gaps = 16/237 (6%)
Query: 87 KGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRA 146
KGA DAK+ +L+++ KE+ A K GG +P +N L + KA+ ++PKD +ER IK+
Sbjct: 14 KGAADAKRGQLFTKFIKEISIAAKMGGGDPATNPRLRTAVLKARAANMPKDNIERAIKKG 73
Query: 147 S-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 205
+ E G + E +YE YG GGV+++VEVLTD R+ A+VR + GG + GSV +
Sbjct: 74 TGELGAVNYEELLYEGYGPGGVAVLVEVLTDNKNRTAASVRNIFTKSGGNLGATGSVAYM 133
Query: 206 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 265
F R V+ ++ +++ AL+AGAED+ ED V + +++
Sbjct: 134 FNRKGVIEYDAEVVSEEAIMEAALEAGAEDI----ATEDGV--------ITVTTDPNDFA 181
Query: 266 DITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ L+E G FE+ + + ++P T + +D + + ++I KL E DDV V ++
Sbjct: 182 SVLEALQEKG--FESVSAAVSMVPDTYVALDADTTQKALKMIDKLEEDDDVQTVSSN 236
>gi|340356246|ref|ZP_08678902.1| glucose-1-phosphate adenylyltransferase [Sporosarcina newyorkensis
2681]
gi|339621629|gb|EGQ26180.1| glucose-1-phosphate adenylyltransferase [Sporosarcina newyorkensis
2681]
Length = 238
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 130/244 (53%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K ++DA +++Y++ G+E+ A K G PNP SN L VLE+AK VP
Sbjct: 1 MGRKWNNIKEKKASKDANTSRIYAKFGREIYVAAKSGDPNPESNQALKFVLERAKTYSVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K I++R I++A G E F E YE +G G ++V+ LT+ + R+ + VR GG
Sbjct: 61 KAIIDRAIEKAKGGGDENFDELRYEGFGVNGSMVIVDALTNNVNRTASEVRAAFGKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
M GSV + F + ++ ++ A D +L++ L+A DV + V++D
Sbjct: 121 MGVSGSVAYMFDPSAIIGVEGKTA--DDVLELLLEADV-DVRDIEVHDDQV--------- 168
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
V + + ++ ++AG+ T +L I +D+EA +++I L +L+DV
Sbjct: 169 LVYAEPSQFHEVQEAFKQAGVTDFTVAELTMLAQNEISLDEEAQAQFEKMIDALDDLEDV 228
Query: 316 DAVY 319
V+
Sbjct: 229 QQVH 232
>gi|431753369|ref|ZP_19542043.1| hypothetical protein OKI_05285 [Enterococcus faecium E2620]
gi|430612276|gb|ELB49327.1| hypothetical protein OKI_05285 [Enterococcus faecium E2620]
Length = 240
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 129/241 (53%), Gaps = 17/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I GRK AQDAK+ K++ ++ +E+ A K GGP+P+ N L V++KAK ++P D VER
Sbjct: 10 IQGRKNAQDAKRGKVFQKLSREIYMAAKAGGPDPSMNPTLRLVVDKAKAANMPNDNVERA 69
Query: 143 IKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+A+ E + E YE YG GV I+V LTD R+ VR GG + + GS
Sbjct: 70 IKKATSAVDETNYDEITYEGYGPDGVGILVHALTDNRNRTATNVRVAFTRNGGSLGETGS 129
Query: 202 VMFKFRRARVVNIKFTD--ADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
V + F R + I+ D++ + + L+AGAED+ P +++ +
Sbjct: 130 VSYLFDRKGYIVIERDGLAVDEETMFEDVLEAGAEDLQTSP------------EVFEIYT 177
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+++ + +L + + + ++P TTI++++E E + L+ KL + DDV V+
Sbjct: 178 APEDFAAVRDELEKEFTLAQAE--LTMIPQTTIDLNEEQREQLERLVDKLEDDDDVSEVF 235
Query: 320 T 320
T
Sbjct: 236 T 236
>gi|401565398|ref|ZP_10806236.1| DNA-binding regulatory protein, YebC/PmpR family [Selenomonas sp.
FOBRC6]
gi|400187147|gb|EJO21343.1| DNA-binding regulatory protein, YebC/PmpR family [Selenomonas sp.
FOBRC6]
Length = 242
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/251 (35%), Positives = 139/251 (55%), Gaps = 27/251 (10%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +KGA DA + K+ +++G+E+ AV+ GG +PT N L L KAK ++PKD
Sbjct: 6 KWANIKRKKGANDAIRGKITTKIGREITIAVRMGGGDPTGNMRLKLALSKAKANNIPKD- 64
Query: 139 VERNIKRASEKGQEA-----FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCG 193
NI RA +KG A + E +YE YG GG ++++++LTD R+ A VR + G
Sbjct: 65 ---NINRAIQKGLGATEGSNYEEVLYEGYGPGGTAVMLDILTDNRNRTAADVRHLFSKYG 121
Query: 194 GKMADPGSV--MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRA 251
G + G V MFK + +V + D D+D LL+I L+AGAED+ EDD
Sbjct: 122 GNLGQDGCVAWMFKKKAVFIVEREAFD-DEDALLEIVLEAGAEDMRA----EDDV----- 171
Query: 252 ERYYKVVSTSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLL 310
+++++ + + I T L E GI ET + ++P TT+ + D+ E + LI L
Sbjct: 172 ---FEIIAEPEAFEAIETVLGEKGI--ETASAEVTMVPDTTVHLADKDAEKMQTLIDALE 226
Query: 311 ELDDVDAVYTD 321
+ DDV VY++
Sbjct: 227 DNDDVQNVYSN 237
>gi|395781284|ref|ZP_10461705.1| UPF0082 protein [Bartonella rattimassiliensis 15908]
gi|395421503|gb|EJF87749.1| UPF0082 protein [Bartonella rattimassiliensis 15908]
Length = 248
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 125/240 (52%), Gaps = 15/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++S++ +E+ A K+G P+P N L ++ AK +PKD +ER
Sbjct: 10 IMHRKGRQDAMRSKIFSKLAREITVAAKQGAPDPAMNPRLRLAVQNAKAQSMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+AS E + E YE YG GGV+++VE LTD R+ + VR GG + + GSV
Sbjct: 70 IKKASGTDVENYDEVRYEGYGPGGVAVIVEALTDNRNRTASNVRAAFTKSGGALGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R + K D ++D A++AGAEDV E + + +
Sbjct: 130 SFMFNRIGEIIYKPEAGTTDNIMDAAIEAGAEDV------------QSEETGHHITCAFE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELN-KELIAKLLELDDVDAVYTD 321
+ +++ L EA + E ++ + TT+ DE L+ LI+ L E DDV VY +
Sbjct: 178 DLGEVSKTL-EAKLG-EAESIKTIWKATTLAPIDEEKALSVLRLISTLEEDDDVQNVYAN 235
>gi|305667593|ref|YP_003863880.1| hypothetical protein FB2170_15148 [Maribacter sp. HTCC2170]
gi|88709643|gb|EAR01876.1| hypothetical protein FB2170_15148 [Maribacter sp. HTCC2170]
Length = 236
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 130/244 (53%), Gaps = 13/244 (5%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR RK + + +K ++R+GK+++ AVK+GGP+P SN+ L AV++ AK +++P
Sbjct: 1 MGRAFEFRKARKMKRWSAMSKAFTRIGKDIVMAVKEGGPDPNSNSRLRAVIQNAKSVNMP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
KD VER IKRA++K + E ++E Y G++I+VE TD TR+VA VR C G
Sbjct: 61 KDNVERAIKRATDKSLGDYKEVLFEGYAPHGIAILVETATDNNTRTVANVRSYFNKCNGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV F F I D ++L +D GAE+V DED Y
Sbjct: 121 LGTSGSVEFMFDHTCNFRIPAEGIDPEELELEMIDFGAEEVF--------VDEDGILIY- 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+ +++ I +L + I +G E +P T ++ +E ++L+ K+ E DDV
Sbjct: 172 ---APFESFGAIQKELEKREIEI-LSSGFERIPQVTKKLTEEETTDVEKLLEKIEEDDDV 227
Query: 316 DAVY 319
VY
Sbjct: 228 QNVY 231
>gi|393759440|ref|ZP_10348255.1| hypothetical protein QWA_09984 [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
gi|393162329|gb|EJC62388.1| hypothetical protein QWA_09984 [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
Length = 243
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 129/243 (53%), Gaps = 14/243 (5%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RKG QDAK+ KL++++ +EV A + GGP+P SN L +KA ++PKD
Sbjct: 6 KWANIQHRKGRQDAKRGKLWTKIIREVTVAARTGGPDPESNPRLRMAWDKATAANMPKDN 65
Query: 139 VERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ R I+R + +A E++ YE YG G +++V+ +TD R+V+ VR GG +
Sbjct: 66 ILRAIQRGAGGADDANYEEIRYEGYGINGAAVIVDCMTDNRQRTVSDVRHAFTKNGGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV+F+FR + +D +++I L+AGA+D++ TDE E +V
Sbjct: 126 LDGSVVFQFRHCGQF-LFAPGTSEDTIMEIGLEAGADDIV--------TDE---EGLIEV 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ +Y + + AG+ E + G + + E+ E ++L+ L LDDV
Sbjct: 174 LCAPSDYPAVQAAFQAAGLTPEVE-GVVMKALNETELSGEDAAKMQKLLDALEGLDDVQE 232
Query: 318 VYT 320
VYT
Sbjct: 233 VYT 235
>gi|212556643|gb|ACJ29097.1| Conserved hypothetical protein [Shewanella piezotolerans WP3]
Length = 247
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 130/239 (54%), Gaps = 17/239 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RK AQDAK+ KL+++ +E+ A ++GG +P SN L A ++K+ ++ +D VER
Sbjct: 10 IKHRKAAQDAKRGKLFTKFIRELTVAAREGGSDPDSNPRLRAAIDKSLSNNMTRDTVERA 69
Query: 143 IKRASEKGQEAFIEK-VYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IKR + + +E +YE YG GG +++VE +TD R+V+ VR GG + GS
Sbjct: 70 IKRGAGELDGQVLETIIYEGYGPGGTAVLVETMTDNKNRTVSGVRNAFSKSGGNLGTDGS 129
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
V + F + + I + +AD+D ++D AL+AGA+DV+ +ED + V +T
Sbjct: 130 VAYLFDKKGI--ISYQNADEDTVMDAALEAGADDVV---AHEDCS--------IDVFTTP 176
Query: 262 DNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+++ + L AG+ E N +LP T E+D LI L + DDV VY
Sbjct: 177 EDFGAVKDALDAAGL--EAVNAEVTMLPSTKAELDASTAPKFLRLIDNLEDHDDVQEVY 233
>gi|298346874|ref|YP_003719561.1| hypothetical protein HMPREF0573_11748 [Mobiluncus curtisii ATCC
43063]
gi|304389421|ref|ZP_07371384.1| YebC like protein [Mobiluncus curtisii subsp. curtisii ATCC 35241]
gi|315655419|ref|ZP_07908319.1| YebC like protein [Mobiluncus curtisii ATCC 51333]
gi|315656668|ref|ZP_07909555.1| YebC like protein [Mobiluncus curtisii subsp. holmesii ATCC 35242]
gi|298236935|gb|ADI68067.1| protein of hypothetical function DUF28 [Mobiluncus curtisii ATCC
43063]
gi|304327231|gb|EFL94466.1| YebC like protein [Mobiluncus curtisii subsp. curtisii ATCC 35241]
gi|315490359|gb|EFU79984.1| YebC like protein [Mobiluncus curtisii ATCC 51333]
gi|315492623|gb|EFU82227.1| YebC like protein [Mobiluncus curtisii subsp. holmesii ATCC 35242]
Length = 252
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 126/239 (52%), Gaps = 16/239 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++R+ K + A + GG +P N L ++KAK+ VP D ++R +KR
Sbjct: 13 KKAAIDAKRGKLFARLIKNIEVAARTGGGDPAGNPTLFDAIQKAKKSSVPADNIDRAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S E G + YE YG GV +VE LTD R+V+ VR + GG +AD GSV
Sbjct: 73 GSGAESGGADWQSITYEGYGPSGVGFIVECLTDNKNRAVSEVRTIFSRNGGNIADSGSVS 132
Query: 204 FKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
++F R V+ + D D+D++L+ L AGA+DV ED E + +D
Sbjct: 133 YQFARRGVIEVAKVDGLDEDKILEAVLAAGADDV-----------EDAGEIFVIETEPTD 181
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ T L++AGI +++ S+ +P + +D +A L L + DDV VY +
Sbjct: 182 -LVAVRTALQDAGIDYDSAE-SQFVPSVKVGLDLDAYRKVMRLFDALEDSDDVQNVYMN 238
>gi|408371185|ref|ZP_11168955.1| hypothetical protein I215_09806 [Galbibacter sp. ck-I2-15]
gi|407743428|gb|EKF55005.1| hypothetical protein I215_09806 [Galbibacter sp. ck-I2-15]
Length = 239
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 130/244 (53%), Gaps = 13/244 (5%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR RK + + AK ++R+GK+++ AVK+GGP+P +N L AV++ AK ++P
Sbjct: 1 MGRAFEFRKARKMKRWSAMAKTFTRLGKDIVMAVKEGGPDPDANARLRAVIQNAKTANMP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
KD +ER IKRAS+K E + E ++E Y G++I++E TD R+VA +R C G
Sbjct: 61 KDNIERAIKRASDKNTEDYKEVLFEGYAPHGIAILIETATDNNNRTVANIRSYFNKCNGS 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV F F I D ++L +D GAE+V + DED Y
Sbjct: 121 LGTSGSVEFMFDHTCNFRIPAEGIDPEELELEFIDFGAEEVFK--------DEDGIHIY- 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+ +++ I +L E + +G E +P T +++ + + ++L+ K+ E DDV
Sbjct: 172 ---APFESFGAIQKELEERRVEI-LSSGFERIPQVTKKLEADHVADVEKLLEKIEEDDDV 227
Query: 316 DAVY 319
VY
Sbjct: 228 QNVY 231
>gi|284035162|ref|YP_003385092.1| hypothetical protein Slin_0228 [Spirosoma linguale DSM 74]
gi|283814455|gb|ADB36293.1| protein of unknown function DUF28 [Spirosoma linguale DSM 74]
Length = 255
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 128/246 (52%), Gaps = 13/246 (5%)
Query: 75 CMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDV 134
MGR RK + + AK ++R+GK+++ AVK GGP+P SN L A+++ AK ++
Sbjct: 18 TMGRAFEYRKARKMKRWGQMAKTFTRIGKDIVMAVKSGGPDPDSNGRLRAIIQNAKAANM 77
Query: 135 PKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGG 194
PK+ V+R IK+AS K QE + E VYE Y G+++V+E TD R+VA VR + GG
Sbjct: 78 PKENVDRAIKKASSKEQEDYKEIVYEAYAPHGIALVIETATDNHNRTVANVRSYLNKLGG 137
Query: 195 KMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERY 254
+ G + F F R V I D+++L +D G ++V + DE+ +
Sbjct: 138 SLGTQGMLDFMFDRKSVFRITAEGIDQEELELELIDVGGDEV--------EFDEEAGQ-- 187
Query: 255 YKVVSTSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELD 313
Y + + I L E G +E E +P E+ DE + ++LI ++ E D
Sbjct: 188 YVIYGEFTAFGSIQKFLEEKG--YEIKQAEFERIPNDYKELTDEEVADVEKLIERIEEDD 245
Query: 314 DVDAVY 319
DV VY
Sbjct: 246 DVQMVY 251
>gi|150024925|ref|YP_001295751.1| hypothetical protein FP0835 [Flavobacterium psychrophilum JIP02/86]
gi|166235095|sp|A6GXW2.1|Y835_FLAPJ RecName: Full=Probable transcriptional regulatory protein FP0835
gi|149771466|emb|CAL42935.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
Length = 236
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 129/244 (52%), Gaps = 13/244 (5%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR GRK + + AK ++R+GK+++ AVK+GGPNP +N+ L AV++ +K +++P
Sbjct: 1 MGRAFEFRKGRKMKRWSAMAKAFTRIGKDIVMAVKEGGPNPEANSRLRAVIQNSKAVNMP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K+ VER IK+A++K + E ++E Y G++I++E +D R+VA +R C G
Sbjct: 61 KENVERAIKKATDKDTANYKEILFEGYAPHGIAILIETASDNNNRTVANIRSYFNKCNGT 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
M GSV F F I D ++L +D GAE+V E DED Y
Sbjct: 121 MGTQGSVEFMFDHTCNFRIPANGMDPEELELELIDFGAEEVFE--------DEDGILIYA 172
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
S + I +L GI +G E +P T E+ + + ++LI K+ E +DV
Sbjct: 173 PFGS----FGTIQKELETRGIEI-LSSGFERIPQITKELTEAQIADVEKLIEKIEEDEDV 227
Query: 316 DAVY 319
VY
Sbjct: 228 MNVY 231
>gi|116871742|ref|YP_848523.1| hypothetical protein lwe0322 [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116740620|emb|CAK19740.1| conserved hypothetical protein [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 239
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 130/244 (53%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K ++D +++Y++ G E+ A K G P+P SN L V+E+AK +VP
Sbjct: 1 MGRKWANIKEKKASKDKTNSRIYAKFGIEIYVAAKSGDPDPHSNQKLRFVIERAKTYNVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K I++R I++A G E + E YE +G G I+V+ LT+ + R+ + VR GG
Sbjct: 61 KHIIDRAIEKAKGTGDETYSELRYEGFGPSGSMIIVDALTNNVNRTASDVRAAYSKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
M GSV + F + ++ DA D+LL++ ++A DV D DED Y
Sbjct: 121 MGVSGSVAYMFDNTAIFGVEGKDA--DELLELLMEADI-DV------RDILDEDGQAIIY 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+ +++ + L+ AGI T E++P I++ E +E + LI L +L+DV
Sbjct: 172 ---AEPEDFHKVQEGLKAAGIEEFTVAEIEMIPQNDIQLSGEDLEKFERLIDALEDLEDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QKVY 232
>gi|345869213|ref|ZP_08821173.1| YebC/PmpR family DNA-binding regulatory protein [Bizionia
argentinensis JUB59]
gi|344046375|gb|EGV42039.1| YebC/PmpR family DNA-binding regulatory protein [Bizionia
argentinensis JUB59]
Length = 240
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 128/244 (52%), Gaps = 13/244 (5%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR RK + + +K ++R+GK+++ AVK+GGP+P SN+ L AV++ AK +++P
Sbjct: 1 MGRAFEFRKARKMKRWSAMSKAFTRIGKDIVMAVKEGGPDPDSNSRLRAVIQNAKSVNMP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
KD VER IKRAS+K Q + E ++E Y G++I+VE TD R+VA VR C G
Sbjct: 61 KDNVERAIKRASDKSQGNYKEVIFEGYAPHGIAILVETATDNNMRTVANVRSYFNKCDGS 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV+F F I D ++L +D GAE+V +DD
Sbjct: 121 LGTSGSVVFMFDHTCNFRIPAEGLDPEELELEFIDFGAEEVF----GDDDG--------I 168
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+ + + + I +L I +G E +P T + E + ++L+ +L E DDV
Sbjct: 169 LIYAPFEYFGAIQAELESREIEI-LSSGFERIPQVTKTISAEEIADVEKLLERLEEDDDV 227
Query: 316 DAVY 319
VY
Sbjct: 228 QNVY 231
>gi|402758814|ref|ZP_10861070.1| hypothetical protein ANCT7_14108 [Acinetobacter sp. NCTC 7422]
Length = 249
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 141/246 (57%), Gaps = 22/246 (8%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK QDA + K++++ +E+++A + GGP+ SN L AV+EKA +++ +D +
Sbjct: 8 ANIKHRKAKQDASRGKVFTKYIREIVTAARLGGPDAASNPRLRAVVEKALSVNMTRDTIN 67
Query: 141 RNIKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I+R A + + E YE YG GGV+++VE +TD + R+V VR G +
Sbjct: 68 RAIQRGAGGEDNDDLKEVTYEGYGVGGVAVIVETMTDNLNRTVPDVRHCFSKTNGNLGTN 127
Query: 200 GSVMFKFRRARVVNIKFTDAD-KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
GSV + F + I F D +D+++++AL+AGA+D+ + DED V+
Sbjct: 128 GSVAYLFTKRG--EISFEDVSLEDKVMEVALEAGADDI--------EIDEDT----ILVI 173
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELL-PITTIEVD--DEAMELNKELIAKLLELDDV 315
++ +++ D+ L AG+ ++DN ++ P T E++ D+A ++ K +I L +LDDV
Sbjct: 174 TSPESFGDVQDALTAAGL--KSDNAEVVMSPSTKAEINDIDQAKQIMK-MIDMLEDLDDV 230
Query: 316 DAVYTD 321
VYT+
Sbjct: 231 QNVYTN 236
>gi|415884242|ref|ZP_11546271.1| hypothetical protein MGA3_03685 [Bacillus methanolicus MGA3]
gi|387592037|gb|EIJ84354.1| hypothetical protein MGA3_03685 [Bacillus methanolicus MGA3]
Length = 242
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 137/243 (56%), Gaps = 18/243 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RK AQDAK+ K++ + K++ A K GG +P +N L V+EKAK +++P + ++R
Sbjct: 10 IQRRKNAQDAKRGKIFMKFAKDIYVAAKNGGGDPATNPSLRLVIEKAKAVNMPNENIQRA 69
Query: 143 IKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
I +A+ G A + E VYE YG GGV+++V+ LTD R+ + +R GG + + GS
Sbjct: 70 INKATGVGSSAKYEEIVYEGYGPGGVAVMVQCLTDNKNRTASNIRLAFSKNGGNLGESGS 129
Query: 202 VMFKFRRA--RVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
V + F R V++ + + D+D++L A++AGAE++ + ++ +++ +
Sbjct: 130 VSYMFDRKGYLVIDREELEIDEDEMLLQAIEAGAEEM------------ETSDEAFEIYT 177
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELD-DVDAV 318
D + ++ L +AG FE + ++P T ++++E M E + +LE D DV +
Sbjct: 178 DPDQFMEVKENLEKAGFTFEEAEIT-MIPQTYTQLNEE-MAAKMEKLLDMLENDEDVQDI 235
Query: 319 YTD 321
Y +
Sbjct: 236 YHN 238
>gi|373858302|ref|ZP_09601040.1| protein of unknown function DUF28 [Bacillus sp. 1NLA3E]
gi|372452115|gb|EHP25588.1| protein of unknown function DUF28 [Bacillus sp. 1NLA3E]
Length = 239
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 133/246 (54%), Gaps = 16/246 (6%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K ++DA +++Y++ G E+ A ++G PNP SN L VLE+AK +VP
Sbjct: 1 MGRKWNNIKEKKASKDANTSRIYAKFGVEIYVAARQGEPNPESNQALKFVLERAKTYNVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
+ I++R I++A +E+++E YE +G G ++V+ LT+ + R+ + VR GG
Sbjct: 61 RHIIDRAIEKAKGGSEESYVELRYEGFGPSGSMVIVDALTNNVNRTASDVRAAYGKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAE--DVIEPPVNEDDTDEDRAER 253
M GSV + F V+ ++ A D++L+I ++A + D+IE EDD+
Sbjct: 121 MGVSGSVAYMFDATAVIGVEGKTA--DEVLEILMEADVDVRDIIE----EDDS------- 167
Query: 254 YYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELD 313
V + D + + + GI T +L + + +EA E +++I L +L+
Sbjct: 168 -VIVYAEPDQFHTVQGAFKNVGITEFTVAELTMLAQNEVTLTEEAQEKFEKMIDALEDLE 226
Query: 314 DVDAVY 319
DV VY
Sbjct: 227 DVQQVY 232
>gi|417712928|ref|ZP_12361903.1| hypothetical protein SFK272_2655 [Shigella flexneri K-272]
gi|417717686|ref|ZP_12366593.1| hypothetical protein SFK227_2415 [Shigella flexneri K-227]
gi|333004097|gb|EGK23631.1| hypothetical protein SFK272_2655 [Shigella flexneri K-272]
gi|333017501|gb|EGK36814.1| hypothetical protein SFK227_2415 [Shigella flexneri K-227]
Length = 238
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 130/244 (53%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ +A K+G P+P NT L V+E+AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGATSKIYAKFGVEIYAAAKQGEPDPELNTSLKFVIERAKQTQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A G E F++ YE +G G I+ E LT + R++A VR + GG
Sbjct: 61 KHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMIIAETLTSNVNRTIANVRTIFNKKGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV + F V+ K TD D + +I L+A DV D T+E+ Y
Sbjct: 121 IGAAGSVSYMFDNTGVIVFKGTDP--DHIFEILLEAEV-DV------RDVTEEEGNIVIY 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+D + I L+ AGI + E++ + +E+ E +E+ + L+ L + DDV
Sbjct: 172 --TEPTDLHKGIAA-LKAAGITEFSTTELEMIAQSEVELSPEDLEIFEGLVDALEDDDDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QKVY 232
>gi|21730736|pdb|1LFP|A Chain A, Crystal Structure Of A Conserved Hypothetical Protein
Aq1575 From Aquifex Aeolicus
Length = 249
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 131/244 (53%), Gaps = 17/244 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
++I +K DA++ KL+S++ +E+I A + GGPNP N L +E+AK+ + P + +E
Sbjct: 8 AQIKHKKAKVDAQRGKLFSKLIREIIVATRLGGPNPEFNPRLRTAIEQAKKANXPWENIE 67
Query: 141 RNIKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+ A E E F E +YE Y GGV++ V TD R+ + VR V GG +
Sbjct: 68 RAIKKGAGELEGEQFEEVIYEGYAPGGVAVXVLATTDNRNRTTSEVRHVFTKHGGNLGAS 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
G V + F R + + + +++LL+ A++ GAEDV +P E + + +
Sbjct: 128 GCVSYLFERKGYIEVPAKEVSEEELLEKAIEVGAEDV-QP-----------GEEVHIIYT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDE--AMELNKELIAKLLELDDVDA 317
+ ++ L + G+P E + PI+T++++DE A ++ K L+ L ELDDV
Sbjct: 176 VPEELYEVKENLEKLGVPIEKAQIT-WKPISTVQINDEETAQKVIK-LLNALEELDDVQQ 233
Query: 318 VYTD 321
V +
Sbjct: 234 VIAN 237
>gi|452975713|gb|EME75531.1| hypothetical protein BSONL12_06843 [Bacillus sonorensis L12]
Length = 239
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 126/244 (51%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K ++DA +++Y++ G+E+ A K+G P+P SN L VLE+AK +VP
Sbjct: 1 MGRKWNNIKEKKASKDANTSRIYAKFGREIYVAAKQGEPDPESNQALKFVLERAKTYNVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K I+ER I++A +E + E YE +G G ++V+ LT+ + R+ A VR GG
Sbjct: 61 KAIIERAIEKAKGGSEENYDELRYEGFGPNGAMVIVDALTNNVNRTAADVRSTFGKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
M GSV + F V+ + AD+ L + D D+IE EDD
Sbjct: 121 MGVSGSVAYMFDPTAVIGFEGKTADETLELLMEADLDVRDIIE----EDDA--------V 168
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
V + D + + L+ AGI T +L + + ++A ++LI L +L+DV
Sbjct: 169 IVYAEPDQFHAVQEALQNAGITEFTVAELMMLAQNEVTLPEDAQAQFEKLIDALEDLEDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QQVY 232
>gi|62180477|ref|YP_216894.1| hypothetical protein SC1907 [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|224583596|ref|YP_002637394.1| hypothetical protein SPC_1814 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|375114806|ref|ZP_09759976.1| UPF0082 protein yebC [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SCSA50]
gi|75482767|sp|Q57N98.1|YEBC_SALCH RecName: Full=Probable transcriptional regulatory protein YebC
gi|62128110|gb|AAX65813.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|224468123|gb|ACN45953.1| hypothetical protein SPC_1814 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|322714952|gb|EFZ06523.1| UPF0082 protein yebC [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SCSA50]
Length = 246
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 129/235 (54%), Gaps = 15/235 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
RK AQDAK+ K+++++ +E+++A K GG +P +N L A ++KA ++ +D + R I R
Sbjct: 13 RKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALANNMTRDTLNRAIAR 72
Query: 146 ASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMF 204
+++ +E + YE YG GG +I++E L+D R+VA VR CGG + GSV +
Sbjct: 73 GVGGDEDSNMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTDGSVAY 132
Query: 205 KFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNY 264
F + V I F D+D +++ AL+AGAEDV+ T +D A V + +
Sbjct: 133 LFSKKGV--ISFEKGDEDTIMEAALEAGAEDVV--------TYDDGA---IDVYTAWEEM 179
Query: 265 TDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ L EAG+ ++ S ++P T ++D E LI L + DDV VY
Sbjct: 180 GKVRDALEEAGLKADSAEVS-MIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVY 233
>gi|406672883|ref|ZP_11080108.1| YebC/PmpR family DNA-binding regulatory protein [Bergeyella
zoohelcum CCUG 30536]
gi|405587427|gb|EKB61155.1| YebC/PmpR family DNA-binding regulatory protein [Bergeyella
zoohelcum CCUG 30536]
Length = 246
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 128/248 (51%), Gaps = 19/248 (7%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR K A+ K AK +S++GK++ AVK GGP+P SN L ++ AK ++P
Sbjct: 1 MGRAFEYRKASKMARWDKMAKTFSKIGKDIAIAVKAGGPDPESNPALRRCIQNAKGANMP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
KD VER IK+AS E + E YE YG GGV+ VE T+ TR+VA VR + G
Sbjct: 61 KDNVERAIKKASGADAEQYDEITYEGYGQGGVAFFVECTTNNPTRTVANVRAIFNKMDGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTD--ADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAER 253
+ G + F F R + + + D + +D GAE++ DTDE+
Sbjct: 121 LGKNGELAFIFDRKGIFTLDKSSITMDWEDFEMEMIDGGAEEI--------DTDENEV-- 170
Query: 254 YYKVVSTSDNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLE 311
V + +++ ++ KL E GI ++ +EL +P T EV +E + N +++ K E
Sbjct: 171 --MVTTAFEDFGALSHKLEELGIEAKS---AELQRIPNMTKEVTEEQFKNNMKMLEKFEE 225
Query: 312 LDDVDAVY 319
DDV VY
Sbjct: 226 DDDVQNVY 233
>gi|331002032|ref|ZP_08325552.1| hypothetical protein HMPREF0491_00414 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330411828|gb|EGG91233.1| hypothetical protein HMPREF0491_00414 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 242
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 128/245 (52%), Gaps = 17/245 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +K DA K K+++ +G+E+ AVK+GGP+P +N+ L V+ KAK +VP D
Sbjct: 6 KFANIKHKKEKNDAAKGKIFTVIGREIAVAVKEGGPDPNNNSKLRDVIAKAKANNVPNDT 65
Query: 139 VERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ER IK+A+ + + +YE YG GV+I+VE LTD R+ A VR GG +
Sbjct: 66 IERGIKKAAGDVNSVNYEHNIYEGYGPNGVAIIVETLTDNKNRTAANVRAAFTKGGGNIG 125
Query: 198 DPGSVMFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
G V F F + +++ + D D D+L+ ALD GAED DE E Y
Sbjct: 126 AQGCVSFMFDKKGQIIIDKEECDMDSDELMMAALDLGAEDF---------NDE---EDSY 173
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLEL-DD 314
++++ DN++ + L + IP + ++P + + DE I LL+ DD
Sbjct: 174 EILTDPDNFSAVREGLEKLNIPMANAEVT-MIPQNWVTLSDEEDIKKMNRILDLLDAEDD 232
Query: 315 VDAVY 319
V VY
Sbjct: 233 VQNVY 237
>gi|167766632|ref|ZP_02438685.1| hypothetical protein CLOSS21_01138 [Clostridium sp. SS2/1]
gi|317499464|ref|ZP_07957730.1| hypothetical protein HMPREF0996_02714 [Lachnospiraceae bacterium
5_1_63FAA]
gi|429762165|ref|ZP_19294568.1| DNA-binding regulatory protein, YebC/PmpR family [Anaerostipes
hadrus DSM 3319]
gi|167711755|gb|EDS22334.1| DNA-binding regulatory protein, YebC/PmpR family [Clostridium sp.
SS2/1]
gi|291558650|emb|CBL37450.1| conserved hypothetical protein TIGR01033 [butyrate-producing
bacterium SSC/2]
gi|316893238|gb|EFV15454.1| hypothetical protein HMPREF0996_02714 [Lachnospiraceae bacterium
5_1_63FAA]
gi|429182250|gb|EKY23368.1| DNA-binding regulatory protein, YebC/PmpR family [Anaerostipes
hadrus DSM 3319]
Length = 242
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 125/220 (56%), Gaps = 16/220 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +K DAKK K+++ +G+E+ AVK+GGP+P +N+ L V+ KAK ++P D +E
Sbjct: 8 ANIKHKKEKNDAKKGKIFTVIGREIAVAVKEGGPDPDNNSRLRDVIAKAKANNMPNDTIE 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+A+ E++ YE YG GV+I+V+ LTD R+ + VR G + P
Sbjct: 68 RGIKKAAGDADSVNYEQITYEGYGPSGVAIIVDTLTDNKNRTASNVRNAFTKGNGNVGTP 127
Query: 200 GSV--MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G V MF+ + +++ + + D D L+ +ALDAGAED E EDD+ ++V
Sbjct: 128 GCVSYMFEKKGQIIISKEECEMDADDLMMMALDAGAEDFNE----EDDS--------FEV 175
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDE 297
++T ++++ + L + IP D ++P T +E+ E
Sbjct: 176 LTTPEDFSAVREALEKEEIPM-ADASVTMIPGTMVELTSE 214
>gi|170757190|ref|YP_001782708.1| hypothetical protein CLD_1467 [Clostridium botulinum B1 str. Okra]
gi|429246554|ref|ZP_19209872.1| hypothetical protein CFSAN001628_015843 [Clostridium botulinum
CFSAN001628]
gi|226734179|sp|B1IMF6.1|Y1467_CLOBK RecName: Full=Probable transcriptional regulatory protein CLD_1467
gi|169122402|gb|ACA46238.1| conserved hypothetical protein TIGR01033 [Clostridium botulinum B1
str. Okra]
gi|428756470|gb|EKX79024.1| hypothetical protein CFSAN001628_015843 [Clostridium botulinum
CFSAN001628]
Length = 246
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 122/217 (56%), Gaps = 15/217 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I +KG DAK+ K+++++GKE++ AVK+GGP+ SN L V+ KAK ++P D +ER+
Sbjct: 10 IQAKKGKADAKRGKIFTKIGKEIVVAVKQGGPSADSNPRLRDVIAKAKANNMPNDTIERS 69
Query: 143 IKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+AS + E + YE YG G++++V+VLTD RS VR GG M G
Sbjct: 70 IKKASGELNAVDYETITYEGYGPAGIAVLVDVLTDNKNRSAGNVRYAFTKQGGNMGSTGC 129
Query: 202 VMFKFR-RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
V F F+ + ++V K D+D+L+ +ALDAGAED + + Y V ++
Sbjct: 130 VSFMFQSKGQIVIEKKDGLDEDELMMMALDAGAEDF------------ESEDEVYVVATS 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDE 297
+++ + L G+ F + +++P T +D++
Sbjct: 178 QEDFGTVREALEAEGLEF-LEAEIKMVPDTYTAIDED 213
>gi|146300315|ref|YP_001194906.1| hypothetical protein Fjoh_2560 [Flavobacterium johnsoniae UW101]
gi|189039858|sp|A5FGS7.1|Y2560_FLAJ1 RecName: Full=Probable transcriptional regulatory protein Fjoh_2560
gi|146154733|gb|ABQ05587.1| protein of unknown function DUF28 [Flavobacterium johnsoniae UW101]
Length = 237
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 126/244 (51%), Gaps = 13/244 (5%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR GRK + + AK ++R+GK+++ AVK+GGPNP +N+ L AV++ AK ++P
Sbjct: 1 MGRAFEFRKGRKMKRWSAMAKTFTRIGKDIVMAVKEGGPNPDANSRLRAVIQNAKAANMP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
KD VER IK AS K + E ++E Y G++I++E +D R+VA +R C G
Sbjct: 61 KDNVERAIKNASNKDTANYKEILFEGYAPHGIAILIETASDNNNRTVANIRSYFNKCNGT 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
M GSV F F I D ++L +D GAE+V E DED Y
Sbjct: 121 MGTQGSVEFMFDHTCNFRIAKDGIDAEELELELIDFGAEEVFE--------DEDGILIYA 172
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
S + + +L G+ +G E +P T E+ + + ++LI K+ E DDV
Sbjct: 173 PFGS----FGALQKELENRGLEI-LSSGFERIPQITKELTEAQIADVEKLIEKIEEDDDV 227
Query: 316 DAVY 319
VY
Sbjct: 228 MNVY 231
>gi|16129927|ref|NP_416490.1| conserved protein, UPF0082 family [Escherichia coli str. K-12
substr. MG1655]
gi|26248297|ref|NP_754337.1| hypothetical protein c2445 [Escherichia coli CFT073]
gi|82543729|ref|YP_407676.1| hypothetical protein SBO_1217 [Shigella boydii Sb227]
gi|91211212|ref|YP_541198.1| hypothetical protein UTI89_C2196 [Escherichia coli UTI89]
gi|110642127|ref|YP_669857.1| hypothetical protein ECP_1956 [Escherichia coli 536]
gi|117624173|ref|YP_853086.1| hypothetical protein APECO1_1069 [Escherichia coli APEC O1]
gi|170081618|ref|YP_001730938.1| hypothetical protein ECDH10B_2127 [Escherichia coli str. K-12
substr. DH10B]
gi|170679717|ref|YP_001743209.1| hypothetical protein EcSMS35_1142 [Escherichia coli SMS-3-5]
gi|188495380|ref|ZP_03002650.1| conserved hypothetical protein TIGR01033 [Escherichia coli 53638]
gi|191174089|ref|ZP_03035604.1| conserved hypothetical protein [Escherichia coli F11]
gi|193066658|ref|ZP_03047691.1| conserved hypothetical protein [Escherichia coli E22]
gi|193070942|ref|ZP_03051872.1| conserved hypothetical protein [Escherichia coli E110019]
gi|194440102|ref|ZP_03072155.1| conserved hypothetical protein [Escherichia coli 101-1]
gi|209919460|ref|YP_002293544.1| hypothetical protein ECSE_2269 [Escherichia coli SE11]
gi|215487174|ref|YP_002329605.1| hypothetical protein E2348C_2090 [Escherichia coli O127:H6 str.
E2348/69]
gi|218558844|ref|YP_002391757.1| hypothetical protein ECS88_2051 [Escherichia coli S88]
gi|218690012|ref|YP_002398224.1| hypothetical protein ECED1_2289 [Escherichia coli ED1a]
gi|218695595|ref|YP_002403262.1| hypothetical protein EC55989_2220 [Escherichia coli 55989]
gi|218699448|ref|YP_002407077.1| hypothetical protein ECIAI39_1062 [Escherichia coli IAI39]
gi|218705518|ref|YP_002413037.1| hypothetical protein ECUMN_2321 [Escherichia coli UMN026]
gi|222156725|ref|YP_002556864.1| hypothetical protein LF82_2967 [Escherichia coli LF82]
gi|227885577|ref|ZP_04003382.1| protein of hypothetical function DUF28 [Escherichia coli 83972]
gi|237704373|ref|ZP_04534854.1| yeeN [Escherichia sp. 3_2_53FAA]
gi|238901180|ref|YP_002926976.1| hypothetical protein BWG_1780 [Escherichia coli BW2952]
gi|251785369|ref|YP_002999673.1| hypothetical protein B21_01884 [Escherichia coli BL21(DE3)]
gi|253773072|ref|YP_003035903.1| hypothetical protein ECBD_1663 [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254161983|ref|YP_003045091.1| hypothetical protein ECB_01895 [Escherichia coli B str. REL606]
gi|254288771|ref|YP_003054519.1| hypothetical protein ECD_01895 [Escherichia coli BL21(DE3)]
gi|260844585|ref|YP_003222363.1| hypothetical protein ECO103_2447 [Escherichia coli O103:H2 str.
12009]
gi|260855957|ref|YP_003229848.1| hypothetical protein ECO26_2876 [Escherichia coli O26:H11 str.
11368]
gi|293405459|ref|ZP_06649451.1| hypothetical protein ECGG_00807 [Escherichia coli FVEC1412]
gi|293410337|ref|ZP_06653913.1| hypothetical protein ECEG_01295 [Escherichia coli B354]
gi|293415291|ref|ZP_06657934.1| hypothetical protein ECDG_01848 [Escherichia coli B185]
gi|298381147|ref|ZP_06990746.1| yeeN protein [Escherichia coli FVEC1302]
gi|300818596|ref|ZP_07098804.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
107-1]
gi|300822247|ref|ZP_07102388.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
119-7]
gi|300901942|ref|ZP_07119970.1| hypothetical protein HMPREF9536_00154 [Escherichia coli MS 84-1]
gi|300921920|ref|ZP_07138074.1| hypothetical protein HMPREF9548_00205 [Escherichia coli MS 182-1]
gi|300931201|ref|ZP_07146545.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
187-1]
gi|300956477|ref|ZP_07168764.1| hypothetical protein HMPREF9547_02296 [Escherichia coli MS 175-1]
gi|300975279|ref|ZP_07172930.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS 45-1]
gi|300993990|ref|ZP_07180632.1| hypothetical protein HMPREF9553_04408 [Escherichia coli MS 200-1]
gi|301018090|ref|ZP_07182641.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS 69-1]
gi|301046425|ref|ZP_07193583.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
185-1]
gi|301327780|ref|ZP_07220978.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS 78-1]
gi|301645485|ref|ZP_07245421.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
146-1]
gi|306814161|ref|ZP_07448327.1| hypothetical protein ECNC101_18991 [Escherichia coli NC101]
gi|312967174|ref|ZP_07781392.1| conserved hypothetical protein [Escherichia coli 2362-75]
gi|312973802|ref|ZP_07787974.1| conserved hypothetical protein [Escherichia coli 1827-70]
gi|331642600|ref|ZP_08343735.1| putative cytoplasmic protein [Escherichia coli H736]
gi|331663475|ref|ZP_08364385.1| putative cytoplasmic protein [Escherichia coli TA143]
gi|331668672|ref|ZP_08369520.1| putative cytoplasmic protein [Escherichia coli TA271]
gi|331683650|ref|ZP_08384246.1| putative cytoplasmic protein [Escherichia coli H299]
gi|386281043|ref|ZP_10058707.1| UPF0082 protein yeeN [Escherichia sp. 4_1_40B]
gi|386595222|ref|YP_006091622.1| hypothetical protein [Escherichia coli DH1]
gi|386599822|ref|YP_006101328.1| YebC/PmpR family DNA-binding regulatory protein [Escherichia coli
IHE3034]
gi|386604049|ref|YP_006110349.1| hypothetical protein UM146_07220 [Escherichia coli UM146]
gi|386614578|ref|YP_006134244.1| hypothetical protein UMNK88_2505 [Escherichia coli UMNK88]
gi|386619581|ref|YP_006139161.1| hypothetical protein ECNA114_2057 [Escherichia coli NA114]
gi|386624610|ref|YP_006144338.1| hypothetical protein CE10_2274 [Escherichia coli O7:K1 str. CE10]
gi|386629724|ref|YP_006149444.1| hypothetical protein i02_2254 [Escherichia coli str. 'clone D i2']
gi|386634644|ref|YP_006154363.1| hypothetical protein i14_2254 [Escherichia coli str. 'clone D i14']
gi|386639510|ref|YP_006106308.1| putative cytoplasmic protein [Escherichia coli ABU 83972]
gi|387607674|ref|YP_006096530.1| hypothetical protein EC042_2224 [Escherichia coli 042]
gi|387617322|ref|YP_006120344.1| hypothetical protein NRG857_09955 [Escherichia coli O83:H1 str. NRG
857C]
gi|387621695|ref|YP_006129322.1| hypothetical protein ECDH1ME8569_1921 [Escherichia coli DH1]
gi|388478041|ref|YP_490229.1| hypothetical protein Y75_p1947 [Escherichia coli str. K-12 substr.
W3110]
gi|404375349|ref|ZP_10980534.1| UPF0082 protein yeeN [Escherichia sp. 1_1_43]
gi|407469858|ref|YP_006783699.1| hypothetical protein O3O_15985 [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407481478|ref|YP_006778627.1| hypothetical protein O3K_09640 [Escherichia coli O104:H4 str.
2011C-3493]
gi|410482028|ref|YP_006769574.1| hypothetical protein O3M_09605 [Escherichia coli O104:H4 str.
2009EL-2050]
gi|415774706|ref|ZP_11487053.1| conserved hypothetical protein [Escherichia coli 3431]
gi|415785326|ref|ZP_11492904.1| hypothetical protein ECEPECA14_2477 [Escherichia coli EPECa14]
gi|415829700|ref|ZP_11515773.1| hypothetical protein ECOK1357_2739 [Escherichia coli OK1357]
gi|415867003|ref|ZP_11539267.1| glucose-1-phosphate adenylyl transferase [Escherichia coli MS 85-1]
gi|415874679|ref|ZP_11541612.1| glucose-1-phosphate adenylyl transferase [Escherichia coli MS
79-10]
gi|416339060|ref|ZP_11674998.1| hypothetical protein EcoM_04486 [Escherichia coli WV_060327]
gi|416897920|ref|ZP_11927568.1| hypothetical protein ECSTEC7V_2372 [Escherichia coli STEC_7v]
gi|417084981|ref|ZP_11952575.1| hypothetical protein i01_02635 [Escherichia coli cloneA_i1]
gi|417115675|ref|ZP_11966811.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
1.2741]
gi|417121392|ref|ZP_11970820.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
97.0246]
gi|417137875|ref|ZP_11981640.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
97.0259]
gi|417176011|ref|ZP_12005807.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
3.2608]
gi|417182659|ref|ZP_12009216.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
93.0624]
gi|417220806|ref|ZP_12024246.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
96.154]
gi|417231724|ref|ZP_12033122.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
5.0959]
gi|417263048|ref|ZP_12050497.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
2.3916]
gi|417276592|ref|ZP_12063920.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
3.2303]
gi|417292765|ref|ZP_12080046.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
B41]
gi|417298111|ref|ZP_12085353.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
900105 (10e)]
gi|417308446|ref|ZP_12095296.1| hypothetical protein PPECC33_18680 [Escherichia coli PCN033]
gi|417586978|ref|ZP_12237749.1| hypothetical protein ECSTECC16502_2612 [Escherichia coli
STEC_C165-02]
gi|417613418|ref|ZP_12263879.1| hypothetical protein ECSTECEH250_2476 [Escherichia coli STEC_EH250]
gi|417618545|ref|ZP_12268964.1| hypothetical protein ECG581_2353 [Escherichia coli G58-1]
gi|417634898|ref|ZP_12285112.1| hypothetical protein ECSTECS1191_2816 [Escherichia coli STEC_S1191]
gi|417639673|ref|ZP_12289821.1| hypothetical protein ECTX1999_2383 [Escherichia coli TX1999]
gi|417688751|ref|ZP_12337991.1| hypothetical protein SB521682_1006 [Shigella boydii 5216-82]
gi|417756047|ref|ZP_12404127.1| hypothetical protein ECDEC2B_2368 [Escherichia coli DEC2B]
gi|417805534|ref|ZP_12452484.1| hypothetical protein HUSEC_11248 [Escherichia coli O104:H4 str.
LB226692]
gi|417828313|ref|ZP_12474869.1| conserved protein [Shigella flexneri J1713]
gi|417833282|ref|ZP_12479730.1| hypothetical protein HUSEC41_11017 [Escherichia coli O104:H4 str.
01-09591]
gi|417867100|ref|ZP_12512139.1| yeeN [Escherichia coli O104:H4 str. C227-11]
gi|417947455|ref|ZP_12590637.1| hypothetical protein IAE_20566 [Escherichia coli XH140A]
gi|417975068|ref|ZP_12615869.1| hypothetical protein IAM_02020 [Escherichia coli XH001]
gi|418042179|ref|ZP_12680385.1| hypothetical protein ECW26_26140 [Escherichia coli W26]
gi|418303318|ref|ZP_12915112.1| hypothetical protein UMNF18_2523 [Escherichia coli UMNF18]
gi|418945813|ref|ZP_13498524.1| hypothetical protein T22_21152 [Escherichia coli O157:H43 str. T22]
gi|418957655|ref|ZP_13509578.1| hypothetical protein OQE_18180 [Escherichia coli J53]
gi|418996807|ref|ZP_13544407.1| hypothetical protein ECDEC1A_2130 [Escherichia coli DEC1A]
gi|419002432|ref|ZP_13549968.1| hypothetical protein ECDEC1B_2334 [Escherichia coli DEC1B]
gi|419008026|ref|ZP_13555466.1| hypothetical protein ECDEC1C_2337 [Escherichia coli DEC1C]
gi|419013812|ref|ZP_13561167.1| hypothetical protein ECDEC1D_2665 [Escherichia coli DEC1D]
gi|419018640|ref|ZP_13565951.1| hypothetical protein ECDEC1E_2344 [Escherichia coli DEC1E]
gi|419024280|ref|ZP_13571511.1| hypothetical protein ECDEC2A_2413 [Escherichia coli DEC2A]
gi|419029327|ref|ZP_13576499.1| hypothetical protein ECDEC2C_2370 [Escherichia coli DEC2C]
gi|419034497|ref|ZP_13581588.1| hypothetical protein ECDEC2D_2177 [Escherichia coli DEC2D]
gi|419142833|ref|ZP_13687577.1| hypothetical protein ECDEC6A_2483 [Escherichia coli DEC6A]
gi|419148777|ref|ZP_13693438.1| hypothetical protein ECDEC6B_2792 [Escherichia coli DEC6B]
gi|419154238|ref|ZP_13698805.1| hypothetical protein ECDEC6C_2398 [Escherichia coli DEC6C]
gi|419159559|ref|ZP_13704068.1| hypothetical protein ECDEC6D_2371 [Escherichia coli DEC6D]
gi|419164775|ref|ZP_13709232.1| hypothetical protein ECDEC6E_2498 [Escherichia coli DEC6E]
gi|419170611|ref|ZP_13714500.1| hypothetical protein ECDEC7A_2271 [Escherichia coli DEC7A]
gi|419191973|ref|ZP_13735431.1| hypothetical protein ECDEC7E_2257 [Escherichia coli DEC7E]
gi|419209963|ref|ZP_13753050.1| hypothetical protein ECDEC8C_3173 [Escherichia coli DEC8C]
gi|419216029|ref|ZP_13759031.1| hypothetical protein ECDEC8D_2791 [Escherichia coli DEC8D]
gi|419227141|ref|ZP_13770000.1| hypothetical protein ECDEC9A_2551 [Escherichia coli DEC9A]
gi|419249493|ref|ZP_13792080.1| hypothetical protein ECDEC9E_2720 [Escherichia coli DEC9E]
gi|419255297|ref|ZP_13797818.1| hypothetical protein ECDEC10A_2812 [Escherichia coli DEC10A]
gi|419261507|ref|ZP_13803931.1| hypothetical protein ECDEC10B_3090 [Escherichia coli DEC10B]
gi|419267335|ref|ZP_13809692.1| hypothetical protein ECDEC10C_3162 [Escherichia coli DEC10C]
gi|419273025|ref|ZP_13815326.1| hypothetical protein ECDEC10D_2781 [Escherichia coli DEC10D]
gi|419284531|ref|ZP_13826709.1| hypothetical protein ECDEC10F_3192 [Escherichia coli DEC10F]
gi|419300645|ref|ZP_13842644.1| hypothetical protein ECDEC11C_2525 [Escherichia coli DEC11C]
gi|419345648|ref|ZP_13887025.1| hypothetical protein ECDEC13A_2209 [Escherichia coli DEC13A]
gi|419350052|ref|ZP_13891394.1| hypothetical protein ECDEC13B_1994 [Escherichia coli DEC13B]
gi|419386460|ref|ZP_13927340.1| hypothetical protein ECDEC14D_2268 [Escherichia coli DEC14D]
gi|419392033|ref|ZP_13932847.1| hypothetical protein ECDEC15A_2639 [Escherichia coli DEC15A]
gi|419397092|ref|ZP_13937861.1| hypothetical protein ECDEC15B_2392 [Escherichia coli DEC15B]
gi|419402444|ref|ZP_13943168.1| hypothetical protein ECDEC15C_2363 [Escherichia coli DEC15C]
gi|419407559|ref|ZP_13948248.1| hypothetical protein ECDEC15D_2267 [Escherichia coli DEC15D]
gi|419413136|ref|ZP_13953790.1| hypothetical protein ECDEC15E_2646 [Escherichia coli DEC15E]
gi|419700802|ref|ZP_14228405.1| hypothetical protein OQA_09636 [Escherichia coli SCI-07]
gi|419871469|ref|ZP_14393526.1| hypothetical protein ECO9450_19375 [Escherichia coli O103:H2 str.
CVM9450]
gi|419878397|ref|ZP_14399868.1| hypothetical protein ECO9534_21317 [Escherichia coli O111:H11 str.
CVM9534]
gi|419883821|ref|ZP_14404875.1| hypothetical protein ECO9545_09145 [Escherichia coli O111:H11 str.
CVM9545]
gi|419901126|ref|ZP_14420507.1| hypothetical protein ECO9942_20384 [Escherichia coli O26:H11 str.
CVM9942]
gi|419908844|ref|ZP_14427501.1| hypothetical protein ECO10026_25062 [Escherichia coli O26:H11 str.
CVM10026]
gi|419916275|ref|ZP_14434588.1| hypothetical protein ECKD2_00225 [Escherichia coli KD2]
gi|419930675|ref|ZP_14448271.1| hypothetical protein EC5411_20356 [Escherichia coli 541-1]
gi|419932552|ref|ZP_14449854.1| hypothetical protein EC5761_03269 [Escherichia coli 576-1]
gi|419942092|ref|ZP_14458735.1| hypothetical protein EC75_22189 [Escherichia coli 75]
gi|419946828|ref|ZP_14463212.1| hypothetical protein ECHM605_22153 [Escherichia coli HM605]
gi|419950281|ref|ZP_14466498.1| hypothetical protein ECMT8_12981 [Escherichia coli CUMT8]
gi|420099497|ref|ZP_14610723.1| hypothetical protein ECO9455_00310 [Escherichia coli O111:H11 str.
CVM9455]
gi|420111614|ref|ZP_14621440.1| hypothetical protein ECO9553_05790 [Escherichia coli O111:H11 str.
CVM9553]
gi|420115858|ref|ZP_14625346.1| hypothetical protein ECO10021_24637 [Escherichia coli O26:H11 str.
CVM10021]
gi|420121293|ref|ZP_14630403.1| hypothetical protein ECO10030_12939 [Escherichia coli O26:H11 str.
CVM10030]
gi|420127681|ref|ZP_14636294.1| hypothetical protein ECO10224_14732 [Escherichia coli O26:H11 str.
CVM10224]
gi|420132995|ref|ZP_14641276.1| hypothetical protein ECO9952_23866 [Escherichia coli O26:H11 str.
CVM9952]
gi|420320814|ref|ZP_14822648.1| hypothetical protein SF285071_2439 [Shigella flexneri 2850-71]
gi|420346253|ref|ZP_14847674.1| hypothetical protein SB96558_1206 [Shigella boydii 965-58]
gi|420386000|ref|ZP_14885355.1| hypothetical protein ECEPECA12_2363 [Escherichia coli EPECa12]
gi|422334110|ref|ZP_16415118.1| UPF0082 protein yeeN [Escherichia coli 4_1_47FAA]
gi|422353195|ref|ZP_16433956.1| hypothetical protein HMPREF9542_02520 [Escherichia coli MS 117-3]
gi|422359449|ref|ZP_16440086.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
110-3]
gi|422367140|ref|ZP_16447597.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
153-1]
gi|422367604|ref|ZP_16448035.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS 16-3]
gi|422379785|ref|ZP_16459969.1| hypothetical protein HMPREF9532_01304 [Escherichia coli MS 57-2]
gi|422749205|ref|ZP_16803117.1| hypothetical protein ERKG_01432 [Escherichia coli H252]
gi|422755344|ref|ZP_16809169.1| hypothetical protein ERLG_02467 [Escherichia coli H263]
gi|422761213|ref|ZP_16814972.1| hypothetical protein ERBG_01136 [Escherichia coli E1167]
gi|422766558|ref|ZP_16820285.1| yeeN [Escherichia coli E1520]
gi|422772154|ref|ZP_16825842.1| hypothetical protein ERDG_02712 [Escherichia coli E482]
gi|422781115|ref|ZP_16833900.1| hypothetical protein ERFG_01355 [Escherichia coli TW10509]
gi|422790746|ref|ZP_16843450.1| hypothetical protein ERHG_01228 [Escherichia coli TA007]
gi|422799273|ref|ZP_16847772.1| hypothetical protein ERJG_00436 [Escherichia coli M863]
gi|422829387|ref|ZP_16877554.1| hypothetical protein ESNG_02059 [Escherichia coli B093]
gi|422838074|ref|ZP_16886047.1| hypothetical protein ESPG_00733 [Escherichia coli H397]
gi|422956635|ref|ZP_16969109.1| UPF0082 protein yeeN [Escherichia coli H494]
gi|422971973|ref|ZP_16975025.1| UPF0082 protein yeeN [Escherichia coli TA124]
gi|422988097|ref|ZP_16978870.1| UPF0082 protein yeeN [Escherichia coli O104:H4 str. C227-11]
gi|422994988|ref|ZP_16985752.1| UPF0082 protein yeeN [Escherichia coli O104:H4 str. C236-11]
gi|423000065|ref|ZP_16990819.1| UPF0082 protein yeeN [Escherichia coli O104:H4 str. 09-7901]
gi|423003734|ref|ZP_16994480.1| UPF0082 protein yeeN [Escherichia coli O104:H4 str. 04-8351]
gi|423010305|ref|ZP_17001039.1| UPF0082 protein yeeN [Escherichia coli O104:H4 str. 11-3677]
gi|423019532|ref|ZP_17010241.1| UPF0082 protein yeeN [Escherichia coli O104:H4 str. 11-4404]
gi|423024698|ref|ZP_17015395.1| UPF0082 protein yeeN [Escherichia coli O104:H4 str. 11-4522]
gi|423030519|ref|ZP_17021207.1| UPF0082 protein yeeN [Escherichia coli O104:H4 str. 11-4623]
gi|423038346|ref|ZP_17029020.1| UPF0082 protein yeeN [Escherichia coli O104:H4 str. 11-4632 C1]
gi|423043468|ref|ZP_17034135.1| UPF0082 protein yeeN [Escherichia coli O104:H4 str. 11-4632 C2]
gi|423045194|ref|ZP_17035854.1| UPF0082 protein yeeN [Escherichia coli O104:H4 str. 11-4632 C3]
gi|423053733|ref|ZP_17042540.1| UPF0082 protein yeeN [Escherichia coli O104:H4 str. 11-4632 C4]
gi|423060708|ref|ZP_17049504.1| UPF0082 protein yeeN [Escherichia coli O104:H4 str. 11-4632 C5]
gi|424747837|ref|ZP_18175995.1| hypothetical protein CFSAN001629_05100 [Escherichia coli O26:H11
str. CFSAN001629]
gi|424756960|ref|ZP_18184740.1| hypothetical protein CFSAN001630_04828 [Escherichia coli O111:H11
str. CFSAN001630]
gi|425273119|ref|ZP_18664545.1| hypothetical protein ECTW15901_2342 [Escherichia coli TW15901]
gi|425283600|ref|ZP_18674654.1| hypothetical protein ECTW00353_2209 [Escherichia coli TW00353]
gi|425305540|ref|ZP_18695279.1| hypothetical protein ECN1_1967 [Escherichia coli N1]
gi|425379904|ref|ZP_18763972.1| hypothetical protein ECEC1865_2936 [Escherichia coli EC1865]
gi|429719572|ref|ZP_19254506.1| hypothetical protein MO3_02291 [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429771459|ref|ZP_19303482.1| hypothetical protein C212_01222 [Escherichia coli O104:H4 str.
11-02030]
gi|429781389|ref|ZP_19313319.1| hypothetical protein C213_01217 [Escherichia coli O104:H4 str.
11-02033-1]
gi|429785039|ref|ZP_19316944.1| hypothetical protein C214_01219 [Escherichia coli O104:H4 str.
11-02092]
gi|429791020|ref|ZP_19322877.1| hypothetical protein C215_01219 [Escherichia coli O104:H4 str.
11-02093]
gi|429796846|ref|ZP_19328655.1| hypothetical protein C216_01220 [Escherichia coli O104:H4 str.
11-02281]
gi|429798445|ref|ZP_19330246.1| hypothetical protein C217_01219 [Escherichia coli O104:H4 str.
11-02318]
gi|429806958|ref|ZP_19338685.1| hypothetical protein C218_01219 [Escherichia coli O104:H4 str.
11-02913]
gi|429811791|ref|ZP_19343481.1| hypothetical protein C219_01218 [Escherichia coli O104:H4 str.
11-03439]
gi|429817378|ref|ZP_19349019.1| hypothetical protein C220_01219 [Escherichia coli O104:H4 str.
11-04080]
gi|429822589|ref|ZP_19354187.1| hypothetical protein C221_01218 [Escherichia coli O104:H4 str.
11-03943]
gi|429903966|ref|ZP_19369945.1| hypothetical protein MO5_00891 [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429908104|ref|ZP_19374068.1| hypothetical protein MO7_00873 [Escherichia coli O104:H4 str.
Ec11-9941]
gi|429913977|ref|ZP_19379925.1| hypothetical protein O7C_00874 [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429919008|ref|ZP_19384940.1| hypothetical protein O7E_00879 [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429924827|ref|ZP_19390741.1| hypothetical protein O7G_01695 [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429928764|ref|ZP_19394666.1| hypothetical protein O7I_00568 [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429935304|ref|ZP_19401190.1| hypothetical protein O7K_02120 [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429940984|ref|ZP_19406858.1| hypothetical protein O7M_02695 [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429943664|ref|ZP_19409527.1| hypothetical protein O7O_00191 [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429951260|ref|ZP_19417106.1| hypothetical protein S7Y_02686 [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429954573|ref|ZP_19420405.1| hypothetical protein S91_00951 [Escherichia coli O104:H4 str.
Ec12-0466]
gi|432353884|ref|ZP_19597158.1| hypothetical protein WCA_02862 [Escherichia coli KTE2]
gi|432358312|ref|ZP_19601540.1| hypothetical protein WCC_02266 [Escherichia coli KTE4]
gi|432362999|ref|ZP_19606168.1| hypothetical protein WCE_02024 [Escherichia coli KTE5]
gi|432377133|ref|ZP_19620130.1| hypothetical protein WCQ_02011 [Escherichia coli KTE12]
gi|432381672|ref|ZP_19624617.1| hypothetical protein WCU_01819 [Escherichia coli KTE15]
gi|432387490|ref|ZP_19630380.1| hypothetical protein WCY_02743 [Escherichia coli KTE16]
gi|432392470|ref|ZP_19635305.1| hypothetical protein WE9_02784 [Escherichia coli KTE21]
gi|432397804|ref|ZP_19640585.1| hypothetical protein WEI_02728 [Escherichia coli KTE25]
gi|432402238|ref|ZP_19644991.1| hypothetical protein WEK_02426 [Escherichia coli KTE26]
gi|432407020|ref|ZP_19649729.1| hypothetical protein WEO_02209 [Escherichia coli KTE28]
gi|432412195|ref|ZP_19654861.1| hypothetical protein WG9_02679 [Escherichia coli KTE39]
gi|432417212|ref|ZP_19659823.1| hypothetical protein WGI_02722 [Escherichia coli KTE44]
gi|432422305|ref|ZP_19664853.1| hypothetical protein A137_02727 [Escherichia coli KTE178]
gi|432426464|ref|ZP_19668966.1| hypothetical protein A139_01854 [Escherichia coli KTE181]
gi|432436663|ref|ZP_19679053.1| hypothetical protein A13M_02374 [Escherichia coli KTE188]
gi|432441418|ref|ZP_19683759.1| hypothetical protein A13O_02244 [Escherichia coli KTE189]
gi|432446540|ref|ZP_19688839.1| hypothetical protein A13S_02581 [Escherichia coli KTE191]
gi|432457034|ref|ZP_19699221.1| hypothetical protein A15C_02825 [Escherichia coli KTE201]
gi|432462244|ref|ZP_19704382.1| hypothetical protein A15I_03118 [Escherichia coli KTE204]
gi|432466047|ref|ZP_19708136.1| hypothetical protein A15K_01991 [Escherichia coli KTE205]
gi|432471305|ref|ZP_19713352.1| hypothetical protein A15M_02191 [Escherichia coli KTE206]
gi|432476176|ref|ZP_19718176.1| hypothetical protein A15Q_02365 [Escherichia coli KTE208]
gi|432485737|ref|ZP_19727653.1| hypothetical protein A15Y_02221 [Escherichia coli KTE212]
gi|432496040|ref|ZP_19737839.1| hypothetical protein A173_03204 [Escherichia coli KTE214]
gi|432504734|ref|ZP_19746464.1| hypothetical protein A17E_01792 [Escherichia coli KTE220]
gi|432514241|ref|ZP_19751467.1| hypothetical protein A17M_02098 [Escherichia coli KTE224]
gi|432518050|ref|ZP_19755242.1| hypothetical protein A17U_01017 [Escherichia coli KTE228]
gi|432524137|ref|ZP_19761267.1| hypothetical protein A17Y_02254 [Escherichia coli KTE230]
gi|432538136|ref|ZP_19775039.1| hypothetical protein A195_01754 [Escherichia coli KTE235]
gi|432543553|ref|ZP_19780400.1| hypothetical protein A197_02139 [Escherichia coli KTE236]
gi|432549043|ref|ZP_19785815.1| hypothetical protein A199_02509 [Escherichia coli KTE237]
gi|432554062|ref|ZP_19790786.1| hypothetical protein A1S3_02460 [Escherichia coli KTE47]
gi|432559175|ref|ZP_19795848.1| hypothetical protein A1S7_02822 [Escherichia coli KTE49]
gi|432569001|ref|ZP_19805519.1| hypothetical protein A1SE_02586 [Escherichia coli KTE53]
gi|432574012|ref|ZP_19810494.1| hypothetical protein A1SI_02711 [Escherichia coli KTE55]
gi|432580714|ref|ZP_19817140.1| hypothetical protein A1SK_04491 [Escherichia coli KTE56]
gi|432584198|ref|ZP_19820595.1| hypothetical protein A1SM_03421 [Escherichia coli KTE57]
gi|432588266|ref|ZP_19824622.1| hypothetical protein A1SO_02621 [Escherichia coli KTE58]
gi|432593197|ref|ZP_19829515.1| hypothetical protein A1SS_02620 [Escherichia coli KTE60]
gi|432597961|ref|ZP_19834237.1| hypothetical protein A1SW_02679 [Escherichia coli KTE62]
gi|432602555|ref|ZP_19838799.1| hypothetical protein A1U5_02395 [Escherichia coli KTE66]
gi|432611741|ref|ZP_19847904.1| hypothetical protein A1UG_02099 [Escherichia coli KTE72]
gi|432616933|ref|ZP_19853054.1| hypothetical protein A1UM_02371 [Escherichia coli KTE75]
gi|432622183|ref|ZP_19858217.1| hypothetical protein A1UO_02059 [Escherichia coli KTE76]
gi|432631725|ref|ZP_19867654.1| hypothetical protein A1UW_02103 [Escherichia coli KTE80]
gi|432641409|ref|ZP_19877244.1| hypothetical protein A1W1_02275 [Escherichia coli KTE83]
gi|432646505|ref|ZP_19882295.1| hypothetical protein A1W5_02255 [Escherichia coli KTE86]
gi|432651496|ref|ZP_19887253.1| hypothetical protein A1W7_02505 [Escherichia coli KTE87]
gi|432656083|ref|ZP_19891789.1| hypothetical protein A1WE_02199 [Escherichia coli KTE93]
gi|432666340|ref|ZP_19901922.1| hypothetical protein A1Y3_02944 [Escherichia coli KTE116]
gi|432671062|ref|ZP_19906593.1| hypothetical protein A1Y7_02603 [Escherichia coli KTE119]
gi|432685773|ref|ZP_19921075.1| hypothetical protein A31A_02628 [Escherichia coli KTE156]
gi|432691929|ref|ZP_19927160.1| hypothetical protein A31G_04152 [Escherichia coli KTE161]
gi|432699361|ref|ZP_19934519.1| hypothetical protein A31M_02108 [Escherichia coli KTE169]
gi|432704760|ref|ZP_19939863.1| hypothetical protein A31Q_02633 [Escherichia coli KTE171]
gi|432710951|ref|ZP_19946013.1| hypothetical protein WCG_04285 [Escherichia coli KTE6]
gi|432713715|ref|ZP_19948756.1| hypothetical protein WCI_02085 [Escherichia coli KTE8]
gi|432719090|ref|ZP_19954059.1| hypothetical protein WCK_02708 [Escherichia coli KTE9]
gi|432723428|ref|ZP_19958348.1| hypothetical protein WE1_02462 [Escherichia coli KTE17]
gi|432728015|ref|ZP_19962894.1| hypothetical protein WE3_02464 [Escherichia coli KTE18]
gi|432732696|ref|ZP_19967529.1| hypothetical protein WGK_02543 [Escherichia coli KTE45]
gi|432737485|ref|ZP_19972248.1| hypothetical protein WGE_02732 [Escherichia coli KTE42]
gi|432741709|ref|ZP_19976428.1| hypothetical protein WEE_02395 [Escherichia coli KTE23]
gi|432745984|ref|ZP_19980653.1| hypothetical protein WGG_02090 [Escherichia coli KTE43]
gi|432750442|ref|ZP_19985049.1| hypothetical protein WEQ_01864 [Escherichia coli KTE29]
gi|432754747|ref|ZP_19989298.1| hypothetical protein WEA_01727 [Escherichia coli KTE22]
gi|432759780|ref|ZP_19994275.1| hypothetical protein A1S1_01902 [Escherichia coli KTE46]
gi|432770948|ref|ZP_20005292.1| hypothetical protein A1S9_03751 [Escherichia coli KTE50]
gi|432775058|ref|ZP_20009340.1| hypothetical protein A1SG_03148 [Escherichia coli KTE54]
gi|432778878|ref|ZP_20013121.1| hypothetical protein A1SQ_02546 [Escherichia coli KTE59]
gi|432783886|ref|ZP_20018067.1| hypothetical protein A1SY_02730 [Escherichia coli KTE63]
gi|432787823|ref|ZP_20021955.1| hypothetical protein A1U3_01938 [Escherichia coli KTE65]
gi|432793174|ref|ZP_20027259.1| hypothetical protein A1US_02392 [Escherichia coli KTE78]
gi|432799131|ref|ZP_20033154.1| hypothetical protein A1UU_03875 [Escherichia coli KTE79]
gi|432815683|ref|ZP_20049468.1| hypothetical protein A1Y1_02089 [Escherichia coli KTE115]
gi|432821260|ref|ZP_20054952.1| hypothetical protein A1Y5_02859 [Escherichia coli KTE118]
gi|432827404|ref|ZP_20061056.1| hypothetical protein A1YA_04124 [Escherichia coli KTE123]
gi|432831947|ref|ZP_20065521.1| hypothetical protein A1YM_03738 [Escherichia coli KTE135]
gi|432834963|ref|ZP_20068502.1| hypothetical protein A1YO_02321 [Escherichia coli KTE136]
gi|432850953|ref|ZP_20081648.1| hypothetical protein A1YY_01782 [Escherichia coli KTE144]
gi|432869281|ref|ZP_20089966.1| hypothetical protein A313_00780 [Escherichia coli KTE147]
gi|432882223|ref|ZP_20098303.1| hypothetical protein A317_04594 [Escherichia coli KTE154]
gi|432886911|ref|ZP_20101000.1| hypothetical protein A31C_02720 [Escherichia coli KTE158]
gi|432898996|ref|ZP_20109688.1| hypothetical protein A13U_02449 [Escherichia coli KTE192]
gi|432905172|ref|ZP_20114078.1| hypothetical protein A13Y_02449 [Escherichia coli KTE194]
gi|432913012|ref|ZP_20118822.1| hypothetical protein A13Q_02437 [Escherichia coli KTE190]
gi|432938187|ref|ZP_20136564.1| hypothetical protein A13C_00988 [Escherichia coli KTE183]
gi|432962002|ref|ZP_20151792.1| hypothetical protein A15E_02715 [Escherichia coli KTE202]
gi|432972163|ref|ZP_20161031.1| hypothetical protein A15O_02739 [Escherichia coli KTE207]
gi|432978732|ref|ZP_20167549.1| hypothetical protein A15S_04649 [Escherichia coli KTE209]
gi|432985691|ref|ZP_20174415.1| hypothetical protein A175_02145 [Escherichia coli KTE215]
gi|432991016|ref|ZP_20179680.1| hypothetical protein A179_02795 [Escherichia coli KTE217]
gi|432995668|ref|ZP_20184279.1| hypothetical protein A17A_02756 [Escherichia coli KTE218]
gi|433000244|ref|ZP_20188774.1| hypothetical protein A17K_02584 [Escherichia coli KTE223]
gi|433005430|ref|ZP_20193860.1| hypothetical protein A17S_03002 [Escherichia coli KTE227]
gi|433007930|ref|ZP_20196348.1| hypothetical protein A17W_00635 [Escherichia coli KTE229]
gi|433014144|ref|ZP_20202505.1| hypothetical protein WI5_01974 [Escherichia coli KTE104]
gi|433018933|ref|ZP_20207176.1| hypothetical protein WI7_01982 [Escherichia coli KTE105]
gi|433023774|ref|ZP_20211775.1| hypothetical protein WI9_01945 [Escherichia coli KTE106]
gi|433028952|ref|ZP_20216812.1| hypothetical protein WIA_02048 [Escherichia coli KTE109]
gi|433038928|ref|ZP_20226532.1| hypothetical protein WIE_02277 [Escherichia coli KTE113]
gi|433053479|ref|ZP_20240672.1| hypothetical protein WIK_02291 [Escherichia coli KTE122]
gi|433058392|ref|ZP_20245451.1| hypothetical protein WIM_02166 [Escherichia coli KTE124]
gi|433063376|ref|ZP_20250309.1| hypothetical protein WIO_02201 [Escherichia coli KTE125]
gi|433068271|ref|ZP_20255071.1| hypothetical protein WIQ_02157 [Escherichia coli KTE128]
gi|433073139|ref|ZP_20259803.1| hypothetical protein WIS_02101 [Escherichia coli KTE129]
gi|433078086|ref|ZP_20264637.1| hypothetical protein WIU_01962 [Escherichia coli KTE131]
gi|433082872|ref|ZP_20269337.1| hypothetical protein WIW_02019 [Escherichia coli KTE133]
gi|433087608|ref|ZP_20273989.1| hypothetical protein WIY_02061 [Escherichia coli KTE137]
gi|433101462|ref|ZP_20287559.1| hypothetical protein WK5_02022 [Escherichia coli KTE145]
gi|433111227|ref|ZP_20297092.1| hypothetical protein WK9_02095 [Escherichia coli KTE150]
gi|433115857|ref|ZP_20301661.1| hypothetical protein WKA_02051 [Escherichia coli KTE153]
gi|433125494|ref|ZP_20311069.1| hypothetical protein WKE_01995 [Escherichia coli KTE160]
gi|433130526|ref|ZP_20315969.1| hypothetical protein WKG_02262 [Escherichia coli KTE163]
gi|433135230|ref|ZP_20320583.1| hypothetical protein WKI_02168 [Escherichia coli KTE166]
gi|433139557|ref|ZP_20324828.1| hypothetical protein WKM_01843 [Escherichia coli KTE167]
gi|433144538|ref|ZP_20329690.1| hypothetical protein WKO_02076 [Escherichia coli KTE168]
gi|433149506|ref|ZP_20334541.1| hypothetical protein WKQ_02161 [Escherichia coli KTE174]
gi|433154048|ref|ZP_20339003.1| hypothetical protein WKS_01981 [Escherichia coli KTE176]
gi|433159014|ref|ZP_20343861.1| hypothetical protein WKU_02093 [Escherichia coli KTE177]
gi|433163760|ref|ZP_20348505.1| hypothetical protein WKW_01970 [Escherichia coli KTE179]
gi|433168890|ref|ZP_20353521.1| hypothetical protein WKY_02131 [Escherichia coli KTE180]
gi|433173846|ref|ZP_20358379.1| hypothetical protein WGQ_02111 [Escherichia coli KTE232]
gi|433178623|ref|ZP_20363032.1| hypothetical protein WGM_02267 [Escherichia coli KTE82]
gi|433183588|ref|ZP_20367852.1| hypothetical protein WGO_02033 [Escherichia coli KTE85]
gi|433188737|ref|ZP_20372840.1| hypothetical protein WGS_01813 [Escherichia coli KTE88]
gi|433198543|ref|ZP_20382455.1| hypothetical protein WGW_02092 [Escherichia coli KTE94]
gi|433212824|ref|ZP_20396426.1| hypothetical protein WI3_02009 [Escherichia coli KTE99]
gi|433323266|ref|ZP_20400636.1| hypothetical protein B185_007392 [Escherichia coli J96]
gi|442594482|ref|ZP_21012381.1| FIG007491: hypothetical protein YeeN [Escherichia coli O10:K5(L):H4
str. ATCC 23506]
gi|442597449|ref|ZP_21015240.1| FIG007491: hypothetical protein YeeN [Escherichia coli O5:K4(L):H4
str. ATCC 23502]
gi|442604731|ref|ZP_21019576.1| FIG007491: hypothetical protein YeeN [Escherichia coli Nissle 1917]
gi|450189937|ref|ZP_21890696.1| hypothetical protein A364_10305 [Escherichia coli SEPT362]
gi|450217819|ref|ZP_21895716.1| hypothetical protein C202_09686 [Escherichia coli O08]
gi|450244632|ref|ZP_21900483.1| hypothetical protein C201_09024 [Escherichia coli S17]
gi|67476512|sp|P0A8A2.1|YEEN_ECOLI RecName: Full=Probable transcriptional regulatory protein YeeN
gi|67476515|sp|P0A8A3.1|YEEN_ECOL6 RecName: Full=Probable transcriptional regulatory protein YeeN
gi|118577829|sp|Q0TGH3.1|YEEN_ECOL5 RecName: Full=Probable transcriptional regulatory protein YeeN
gi|119392020|sp|Q1RAE7.1|YEEN_ECOUT RecName: Full=Probable transcriptional regulatory protein YeeN
gi|119392021|sp|Q322B0.1|YEEN_SHIBS RecName: Full=Probable transcriptional regulatory protein YeeN
gi|26108701|gb|AAN80904.1|AE016762_157 Hypothetical protein yeeN [Escherichia coli CFT073]
gi|1788294|gb|AAC75047.1| conserved protein, UPF0082 family [Escherichia coli str. K-12
substr. MG1655]
gi|81245140|gb|ABB65848.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|85675180|dbj|BAA15803.2| conserved hypothetical protein [Escherichia coli str. K12 substr.
W3110]
gi|91072786|gb|ABE07667.1| hypothetical protein UTI89_C2196 [Escherichia coli UTI89]
gi|110343719|gb|ABG69956.1| hypothetical protein YeeN [Escherichia coli 536]
gi|115513297|gb|ABJ01372.1| conserved hypothetical protein [Escherichia coli APEC O1]
gi|169889453|gb|ACB03160.1| conserved protein [Escherichia coli str. K-12 substr. DH10B]
gi|170517435|gb|ACB15613.1| conserved hypothetical protein [Escherichia coli SMS-3-5]
gi|188490579|gb|EDU65682.1| conserved hypothetical protein TIGR01033 [Escherichia coli 53638]
gi|190905637|gb|EDV65261.1| conserved hypothetical protein [Escherichia coli F11]
gi|192925698|gb|EDV80359.1| conserved hypothetical protein [Escherichia coli E22]
gi|192955728|gb|EDV86201.1| conserved hypothetical protein [Escherichia coli E110019]
gi|194420961|gb|EDX36995.1| conserved hypothetical protein [Escherichia coli 101-1]
gi|209912719|dbj|BAG77793.1| conserved hypothetical protein [Escherichia coli SE11]
gi|215265246|emb|CAS09638.1| predicted protein [Escherichia coli O127:H6 str. E2348/69]
gi|218352327|emb|CAU98093.1| conserved hypothetical protein [Escherichia coli 55989]
gi|218365613|emb|CAR03344.1| conserved hypothetical protein [Escherichia coli S88]
gi|218369434|emb|CAR17197.1| conserved hypothetical protein [Escherichia coli IAI39]
gi|218427576|emb|CAR08476.2| conserved hypothetical protein [Escherichia coli ED1a]
gi|218432615|emb|CAR13509.1| conserved hypothetical protein [Escherichia coli UMN026]
gi|222033730|emb|CAP76471.1| UPF0082 protein yeen [Escherichia coli LF82]
gi|226900739|gb|EEH86998.1| yeeN [Escherichia sp. 3_2_53FAA]
gi|227837150|gb|EEJ47616.1| protein of hypothetical function DUF28 [Escherichia coli 83972]
gi|238860501|gb|ACR62499.1| conserved protein [Escherichia coli BW2952]
gi|242377642|emb|CAQ32401.1| conserved protein [Escherichia coli BL21(DE3)]
gi|253324116|gb|ACT28718.1| protein of unknown function DUF28 [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253973884|gb|ACT39555.1| hypothetical protein ECB_01895 [Escherichia coli B str. REL606]
gi|253978078|gb|ACT43748.1| hypothetical protein ECD_01895 [Escherichia coli BL21(DE3)]
gi|257754606|dbj|BAI26108.1| conserved predicted protein [Escherichia coli O26:H11 str. 11368]
gi|257759732|dbj|BAI31229.1| conserved predicted protein [Escherichia coli O103:H2 str. 12009]
gi|260448911|gb|ACX39333.1| protein of unknown function DUF28 [Escherichia coli DH1]
gi|284921974|emb|CBG35050.1| conserved hypothetical protein [Escherichia coli 042]
gi|291427667|gb|EFF00694.1| hypothetical protein ECGG_00807 [Escherichia coli FVEC1412]
gi|291432939|gb|EFF05918.1| hypothetical protein ECDG_01848 [Escherichia coli B185]
gi|291470805|gb|EFF13289.1| hypothetical protein ECEG_01295 [Escherichia coli B354]
gi|294489932|gb|ADE88688.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
IHE3034]
gi|298278589|gb|EFI20103.1| yeeN protein [Escherichia coli FVEC1302]
gi|300301597|gb|EFJ57982.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
185-1]
gi|300305015|gb|EFJ59535.1| hypothetical protein HMPREF9553_04408 [Escherichia coli MS 200-1]
gi|300316698|gb|EFJ66482.1| hypothetical protein HMPREF9547_02296 [Escherichia coli MS 175-1]
gi|300399871|gb|EFJ83409.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS 69-1]
gi|300405910|gb|EFJ89448.1| hypothetical protein HMPREF9536_00154 [Escherichia coli MS 84-1]
gi|300410399|gb|EFJ93937.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS 45-1]
gi|300421696|gb|EFK05007.1| hypothetical protein HMPREF9548_00205 [Escherichia coli MS 182-1]
gi|300460972|gb|EFK24465.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
187-1]
gi|300525130|gb|EFK46199.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
119-7]
gi|300528768|gb|EFK49830.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
107-1]
gi|300845673|gb|EFK73433.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS 78-1]
gi|301076221|gb|EFK91027.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
146-1]
gi|305852320|gb|EFM52771.1| hypothetical protein ECNC101_18991 [Escherichia coli NC101]
gi|307554002|gb|ADN46777.1| putative cytoplasmic protein [Escherichia coli ABU 83972]
gi|307626533|gb|ADN70837.1| hypothetical protein UM146_07220 [Escherichia coli UM146]
gi|310332397|gb|EFP99632.1| conserved hypothetical protein [Escherichia coli 1827-70]
gi|312288638|gb|EFR16540.1| conserved hypothetical protein [Escherichia coli 2362-75]
gi|312946583|gb|ADR27410.1| hypothetical protein NRG857_09955 [Escherichia coli O83:H1 str. NRG
857C]
gi|315136618|dbj|BAJ43777.1| hypothetical protein ECDH1ME8569_1921 [Escherichia coli DH1]
gi|315253107|gb|EFU33075.1| glucose-1-phosphate adenylyl transferase [Escherichia coli MS 85-1]
gi|315286750|gb|EFU46175.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
110-3]
gi|315290172|gb|EFU49552.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
153-1]
gi|315300649|gb|EFU59877.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS 16-3]
gi|315618041|gb|EFU98633.1| conserved hypothetical protein [Escherichia coli 3431]
gi|320193253|gb|EFW67891.1| hypothetical protein EcoM_04486 [Escherichia coli WV_060327]
gi|323155653|gb|EFZ41826.1| hypothetical protein ECEPECA14_2477 [Escherichia coli EPECa14]
gi|323183761|gb|EFZ69152.1| hypothetical protein ECOK1357_2739 [Escherichia coli OK1357]
gi|323936967|gb|EGB33248.1| yeeN [Escherichia coli E1520]
gi|323940363|gb|EGB36554.1| hypothetical protein ERDG_02712 [Escherichia coli E482]
gi|323952481|gb|EGB48354.1| hypothetical protein ERKG_01432 [Escherichia coli H252]
gi|323956408|gb|EGB52151.1| hypothetical protein ERLG_02467 [Escherichia coli H263]
gi|323968273|gb|EGB63681.1| hypothetical protein ERJG_00436 [Escherichia coli M863]
gi|323972859|gb|EGB68058.1| hypothetical protein ERHG_01228 [Escherichia coli TA007]
gi|323977833|gb|EGB72919.1| hypothetical protein ERFG_01355 [Escherichia coli TW10509]
gi|324008987|gb|EGB78206.1| hypothetical protein HMPREF9532_01304 [Escherichia coli MS 57-2]
gi|324018811|gb|EGB88030.1| hypothetical protein HMPREF9542_02520 [Escherichia coli MS 117-3]
gi|324119027|gb|EGC12916.1| hypothetical protein ERBG_01136 [Escherichia coli E1167]
gi|327253122|gb|EGE64776.1| hypothetical protein ECSTEC7V_2372 [Escherichia coli STEC_7v]
gi|331039398|gb|EGI11618.1| putative cytoplasmic protein [Escherichia coli H736]
gi|331059274|gb|EGI31251.1| putative cytoplasmic protein [Escherichia coli TA143]
gi|331063866|gb|EGI35777.1| putative cytoplasmic protein [Escherichia coli TA271]
gi|331078602|gb|EGI49804.1| putative cytoplasmic protein [Escherichia coli H299]
gi|332093064|gb|EGI98128.1| hypothetical protein SB521682_1006 [Shigella boydii 5216-82]
gi|332343747|gb|AEE57081.1| conserved hypothetical protein [Escherichia coli UMNK88]
gi|333970082|gb|AEG36887.1| hypothetical protein ECNA114_2057 [Escherichia coli NA114]
gi|335575304|gb|EGM61600.1| conserved protein [Shigella flexneri J1713]
gi|338769971|gb|EGP24741.1| hypothetical protein PPECC33_18680 [Escherichia coli PCN033]
gi|339415416|gb|AEJ57088.1| hypothetical protein UMNF18_2523 [Escherichia coli UMNF18]
gi|340734164|gb|EGR63294.1| hypothetical protein HUSEC41_11017 [Escherichia coli O104:H4 str.
01-09591]
gi|340739902|gb|EGR74133.1| hypothetical protein HUSEC_11248 [Escherichia coli O104:H4 str.
LB226692]
gi|341920389|gb|EGT69997.1| yeeN [Escherichia coli O104:H4 str. C227-11]
gi|342360812|gb|EGU24977.1| hypothetical protein IAE_20566 [Escherichia coli XH140A]
gi|342929881|gb|EGU98603.1| glucose-1-phosphate adenylyl transferase [Escherichia coli MS
79-10]
gi|344195677|gb|EGV49746.1| hypothetical protein IAM_02020 [Escherichia coli XH001]
gi|345336606|gb|EGW69040.1| hypothetical protein ECSTECC16502_2612 [Escherichia coli
STEC_C165-02]
gi|345362929|gb|EGW95074.1| hypothetical protein ECSTECEH250_2476 [Escherichia coli STEC_EH250]
gi|345376641|gb|EGX08575.1| hypothetical protein ECG581_2353 [Escherichia coli G58-1]
gi|345388389|gb|EGX18200.1| hypothetical protein ECSTECS1191_2816 [Escherichia coli STEC_S1191]
gi|345393617|gb|EGX23388.1| hypothetical protein ECTX1999_2383 [Escherichia coli TX1999]
gi|349738348|gb|AEQ13054.1| conserved protein, UPF0082 family [Escherichia coli O7:K1 str.
CE10]
gi|354861823|gb|EHF22261.1| UPF0082 protein yeeN [Escherichia coli O104:H4 str. C236-11]
gi|354867108|gb|EHF27530.1| UPF0082 protein yeeN [Escherichia coli O104:H4 str. C227-11]
gi|354869181|gb|EHF29591.1| UPF0082 protein yeeN [Escherichia coli O104:H4 str. 04-8351]
gi|354873036|gb|EHF33413.1| UPF0082 protein yeeN [Escherichia coli O104:H4 str. 09-7901]
gi|354879788|gb|EHF40124.1| UPF0082 protein yeeN [Escherichia coli O104:H4 str. 11-3677]
gi|354890033|gb|EHF50278.1| UPF0082 protein yeeN [Escherichia coli O104:H4 str. 11-4404]
gi|354892806|gb|EHF53010.1| UPF0082 protein yeeN [Escherichia coli O104:H4 str. 11-4522]
gi|354895505|gb|EHF55691.1| UPF0082 protein yeeN [Escherichia coli O104:H4 str. 11-4632 C1]
gi|354897217|gb|EHF57375.1| UPF0082 protein yeeN [Escherichia coli O104:H4 str. 11-4623]
gi|354899594|gb|EHF59739.1| UPF0082 protein yeeN [Escherichia coli O104:H4 str. 11-4632 C2]
gi|354912630|gb|EHF72628.1| UPF0082 protein yeeN [Escherichia coli O104:H4 str. 11-4632 C5]
gi|354915635|gb|EHF75611.1| UPF0082 protein yeeN [Escherichia coli O104:H4 str. 11-4632 C3]
gi|354918141|gb|EHF78098.1| UPF0082 protein yeeN [Escherichia coli O104:H4 str. 11-4632 C4]
gi|355351563|gb|EHG00751.1| hypothetical protein i01_02635 [Escherichia coli cloneA_i1]
gi|355420623|gb|AER84820.1| hypothetical protein i02_2254 [Escherichia coli str. 'clone D i2']
gi|355425543|gb|AER89739.1| hypothetical protein i14_2254 [Escherichia coli str. 'clone D i14']
gi|359332398|dbj|BAL38845.1| conserved protein [Escherichia coli str. K-12 substr. MDS42]
gi|371598332|gb|EHN87135.1| UPF0082 protein yeeN [Escherichia coli TA124]
gi|371599500|gb|EHN88286.1| UPF0082 protein yeeN [Escherichia coli H494]
gi|371610120|gb|EHN98652.1| hypothetical protein ESNG_02059 [Escherichia coli B093]
gi|371613998|gb|EHO02483.1| hypothetical protein ESPG_00733 [Escherichia coli H397]
gi|373244932|gb|EHP64409.1| UPF0082 protein yeeN [Escherichia coli 4_1_47FAA]
gi|375318871|gb|EHS65206.1| hypothetical protein T22_21152 [Escherichia coli O157:H43 str. T22]
gi|377845424|gb|EHU10446.1| hypothetical protein ECDEC1A_2130 [Escherichia coli DEC1A]
gi|377846535|gb|EHU11547.1| hypothetical protein ECDEC1C_2337 [Escherichia coli DEC1C]
gi|377849483|gb|EHU14457.1| hypothetical protein ECDEC1B_2334 [Escherichia coli DEC1B]
gi|377858796|gb|EHU23635.1| hypothetical protein ECDEC1D_2665 [Escherichia coli DEC1D]
gi|377862370|gb|EHU27183.1| hypothetical protein ECDEC1E_2344 [Escherichia coli DEC1E]
gi|377865761|gb|EHU30552.1| hypothetical protein ECDEC2A_2413 [Escherichia coli DEC2A]
gi|377875172|gb|EHU39788.1| hypothetical protein ECDEC2B_2368 [Escherichia coli DEC2B]
gi|377880365|gb|EHU44936.1| hypothetical protein ECDEC2C_2370 [Escherichia coli DEC2C]
gi|377881567|gb|EHU46124.1| hypothetical protein ECDEC2D_2177 [Escherichia coli DEC2D]
gi|377994121|gb|EHV57251.1| hypothetical protein ECDEC6B_2792 [Escherichia coli DEC6B]
gi|377995475|gb|EHV58592.1| hypothetical protein ECDEC6A_2483 [Escherichia coli DEC6A]
gi|377998277|gb|EHV61372.1| hypothetical protein ECDEC6C_2398 [Escherichia coli DEC6C]
gi|378009603|gb|EHV72559.1| hypothetical protein ECDEC6D_2371 [Escherichia coli DEC6D]
gi|378010857|gb|EHV73802.1| hypothetical protein ECDEC6E_2498 [Escherichia coli DEC6E]
gi|378016263|gb|EHV79150.1| hypothetical protein ECDEC7A_2271 [Escherichia coli DEC7A]
gi|378039230|gb|EHW01727.1| hypothetical protein ECDEC7E_2257 [Escherichia coli DEC7E]
gi|378055194|gb|EHW17462.1| hypothetical protein ECDEC8C_3173 [Escherichia coli DEC8C]
gi|378062513|gb|EHW24690.1| hypothetical protein ECDEC8D_2791 [Escherichia coli DEC8D]
gi|378075291|gb|EHW37316.1| hypothetical protein ECDEC9A_2551 [Escherichia coli DEC9A]
gi|378095976|gb|EHW57756.1| hypothetical protein ECDEC9E_2720 [Escherichia coli DEC9E]
gi|378101050|gb|EHW62740.1| hypothetical protein ECDEC10A_2812 [Escherichia coli DEC10A]
gi|378107403|gb|EHW69024.1| hypothetical protein ECDEC10B_3090 [Escherichia coli DEC10B]
gi|378112107|gb|EHW73687.1| hypothetical protein ECDEC10C_3162 [Escherichia coli DEC10C]
gi|378117742|gb|EHW79256.1| hypothetical protein ECDEC10D_2781 [Escherichia coli DEC10D]
gi|378133273|gb|EHW94619.1| hypothetical protein ECDEC10F_3192 [Escherichia coli DEC10F]
gi|378150261|gb|EHX11376.1| hypothetical protein ECDEC11C_2525 [Escherichia coli DEC11C]
gi|378187147|gb|EHX47762.1| hypothetical protein ECDEC13A_2209 [Escherichia coli DEC13A]
gi|378201293|gb|EHX61739.1| hypothetical protein ECDEC13B_1994 [Escherichia coli DEC13B]
gi|378231828|gb|EHX91933.1| hypothetical protein ECDEC14D_2268 [Escherichia coli DEC14D]
gi|378238154|gb|EHX98167.1| hypothetical protein ECDEC15A_2639 [Escherichia coli DEC15A]
gi|378244537|gb|EHY04480.1| hypothetical protein ECDEC15B_2392 [Escherichia coli DEC15B]
gi|378246978|gb|EHY06897.1| hypothetical protein ECDEC15C_2363 [Escherichia coli DEC15C]
gi|378253938|gb|EHY13802.1| hypothetical protein ECDEC15D_2267 [Escherichia coli DEC15D]
gi|378259245|gb|EHY19059.1| hypothetical protein ECDEC15E_2646 [Escherichia coli DEC15E]
gi|380348051|gb|EIA36336.1| hypothetical protein OQA_09636 [Escherichia coli SCI-07]
gi|383474856|gb|EID66829.1| hypothetical protein ECW26_26140 [Escherichia coli W26]
gi|384379264|gb|EIE37132.1| hypothetical protein OQE_18180 [Escherichia coli J53]
gi|386122226|gb|EIG70839.1| UPF0082 protein yeeN [Escherichia sp. 4_1_40B]
gi|386141094|gb|EIG82246.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
1.2741]
gi|386148244|gb|EIG94681.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
97.0246]
gi|386158621|gb|EIH14956.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
97.0259]
gi|386178703|gb|EIH56182.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
3.2608]
gi|386184512|gb|EIH67251.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
93.0624]
gi|386200608|gb|EIH99598.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
96.154]
gi|386204723|gb|EII09234.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
5.0959]
gi|386223302|gb|EII45676.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
2.3916]
gi|386240764|gb|EII77686.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
3.2303]
gi|386255087|gb|EIJ04777.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
B41]
gi|386258379|gb|EIJ13858.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
900105 (10e)]
gi|388335262|gb|EIL01832.1| hypothetical protein ECO9534_21317 [Escherichia coli O111:H11 str.
CVM9534]
gi|388337139|gb|EIL03651.1| hypothetical protein ECO9450_19375 [Escherichia coli O103:H2 str.
CVM9450]
gi|388357145|gb|EIL21743.1| hypothetical protein ECO9545_09145 [Escherichia coli O111:H11 str.
CVM9545]
gi|388374249|gb|EIL37429.1| hypothetical protein ECO10026_25062 [Escherichia coli O26:H11 str.
CVM10026]
gi|388376652|gb|EIL39543.1| hypothetical protein ECO9942_20384 [Escherichia coli O26:H11 str.
CVM9942]
gi|388396345|gb|EIL57456.1| hypothetical protein ECKD2_00225 [Escherichia coli KD2]
gi|388398707|gb|EIL59537.1| hypothetical protein EC75_22189 [Escherichia coli 75]
gi|388399693|gb|EIL60476.1| hypothetical protein EC5411_20356 [Escherichia coli 541-1]
gi|388412122|gb|EIL72227.1| hypothetical protein ECHM605_22153 [Escherichia coli HM605]
gi|388416847|gb|EIL76722.1| hypothetical protein EC5761_03269 [Escherichia coli 576-1]
gi|388417170|gb|EIL77032.1| hypothetical protein ECMT8_12981 [Escherichia coli CUMT8]
gi|391249777|gb|EIQ09005.1| hypothetical protein SF285071_2439 [Shigella flexneri 2850-71]
gi|391274343|gb|EIQ33155.1| hypothetical protein SB96558_1206 [Shigella boydii 965-58]
gi|391305716|gb|EIQ63494.1| hypothetical protein ECEPECA12_2363 [Escherichia coli EPECa12]
gi|394388172|gb|EJE65465.1| hypothetical protein ECO10224_14732 [Escherichia coli O26:H11 str.
CVM10224]
gi|394398077|gb|EJE74286.1| hypothetical protein ECO9553_05790 [Escherichia coli O111:H11 str.
CVM9553]
gi|394405271|gb|EJE80495.1| hypothetical protein ECO10021_24637 [Escherichia coli O26:H11 str.
CVM10021]
gi|394422933|gb|EJE96238.1| hypothetical protein ECO9455_00310 [Escherichia coli O111:H11 str.
CVM9455]
gi|394426313|gb|EJE99164.1| hypothetical protein ECO10030_12939 [Escherichia coli O26:H11 str.
CVM10030]
gi|394427145|gb|EJE99890.1| hypothetical protein ECO9952_23866 [Escherichia coli O26:H11 str.
CVM9952]
gi|404291110|gb|EJZ48005.1| UPF0082 protein yeeN [Escherichia sp. 1_1_43]
gi|406777190|gb|AFS56614.1| hypothetical protein O3M_09605 [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407053775|gb|AFS73826.1| hypothetical protein O3K_09640 [Escherichia coli O104:H4 str.
2011C-3493]
gi|407065893|gb|AFS86940.1| hypothetical protein O3O_15985 [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408193958|gb|EKI19462.1| hypothetical protein ECTW15901_2342 [Escherichia coli TW15901]
gi|408202559|gb|EKI27650.1| hypothetical protein ECTW00353_2209 [Escherichia coli TW00353]
gi|408229219|gb|EKI52659.1| hypothetical protein ECN1_1967 [Escherichia coli N1]
gi|408297364|gb|EKJ15468.1| hypothetical protein ECEC1865_2936 [Escherichia coli EC1865]
gi|421945600|gb|EKU02804.1| hypothetical protein CFSAN001629_05100 [Escherichia coli O26:H11
str. CFSAN001629]
gi|421949408|gb|EKU06363.1| hypothetical protein CFSAN001630_04828 [Escherichia coli O111:H11
str. CFSAN001630]
gi|429347165|gb|EKY83941.1| hypothetical protein C213_01217 [Escherichia coli O104:H4 str.
11-02033-1]
gi|429349816|gb|EKY86552.1| hypothetical protein C214_01219 [Escherichia coli O104:H4 str.
11-02092]
gi|429360942|gb|EKY97599.1| hypothetical protein C212_01222 [Escherichia coli O104:H4 str.
11-02030]
gi|429362373|gb|EKY99020.1| hypothetical protein C215_01219 [Escherichia coli O104:H4 str.
11-02093]
gi|429363332|gb|EKY99973.1| hypothetical protein C216_01220 [Escherichia coli O104:H4 str.
11-02281]
gi|429365762|gb|EKZ02374.1| hypothetical protein C217_01219 [Escherichia coli O104:H4 str.
11-02318]
gi|429376617|gb|EKZ13145.1| hypothetical protein C218_01219 [Escherichia coli O104:H4 str.
11-02913]
gi|429380659|gb|EKZ17148.1| hypothetical protein C221_01218 [Escherichia coli O104:H4 str.
11-03943]
gi|429381105|gb|EKZ17593.1| hypothetical protein C219_01218 [Escherichia coli O104:H4 str.
11-03439]
gi|429392880|gb|EKZ29279.1| hypothetical protein C220_01219 [Escherichia coli O104:H4 str.
11-04080]
gi|429405910|gb|EKZ42172.1| hypothetical protein O7C_00874 [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429408028|gb|EKZ44274.1| hypothetical protein MO5_00891 [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429411142|gb|EKZ47353.1| hypothetical protein MO3_02291 [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429414984|gb|EKZ51156.1| hypothetical protein O7I_00568 [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429422386|gb|EKZ58505.1| hypothetical protein O7G_01695 [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429429150|gb|EKZ65219.1| hypothetical protein O7E_00879 [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429433234|gb|EKZ69268.1| hypothetical protein O7K_02120 [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429437149|gb|EKZ73160.1| hypothetical protein O7M_02695 [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429441878|gb|EKZ77843.1| hypothetical protein O7O_00191 [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429447867|gb|EKZ83784.1| hypothetical protein S7Y_02686 [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429452411|gb|EKZ88296.1| hypothetical protein MO7_00873 [Escherichia coli O104:H4 str.
Ec11-9941]
gi|429457530|gb|EKZ93368.1| hypothetical protein S91_00951 [Escherichia coli O104:H4 str.
Ec12-0466]
gi|430876125|gb|ELB99646.1| hypothetical protein WCA_02862 [Escherichia coli KTE2]
gi|430877553|gb|ELC01003.1| hypothetical protein WCC_02266 [Escherichia coli KTE4]
gi|430886701|gb|ELC09550.1| hypothetical protein WCE_02024 [Escherichia coli KTE5]
gi|430899425|gb|ELC21530.1| hypothetical protein WCQ_02011 [Escherichia coli KTE12]
gi|430906883|gb|ELC28388.1| hypothetical protein WCY_02743 [Escherichia coli KTE16]
gi|430908675|gb|ELC30068.1| hypothetical protein WCU_01819 [Escherichia coli KTE15]
gi|430915908|gb|ELC36986.1| hypothetical protein WEI_02728 [Escherichia coli KTE25]
gi|430918813|gb|ELC39766.1| hypothetical protein WE9_02784 [Escherichia coli KTE21]
gi|430927068|gb|ELC47655.1| hypothetical protein WEK_02426 [Escherichia coli KTE26]
gi|430929779|gb|ELC50288.1| hypothetical protein WEO_02209 [Escherichia coli KTE28]
gi|430935421|gb|ELC55743.1| hypothetical protein WG9_02679 [Escherichia coli KTE39]
gi|430940574|gb|ELC60757.1| hypothetical protein WGI_02722 [Escherichia coli KTE44]
gi|430945064|gb|ELC65153.1| hypothetical protein A137_02727 [Escherichia coli KTE178]
gi|430955917|gb|ELC74599.1| hypothetical protein A139_01854 [Escherichia coli KTE181]
gi|430962987|gb|ELC80832.1| hypothetical protein A13M_02374 [Escherichia coli KTE188]
gi|430967259|gb|ELC84621.1| hypothetical protein A13O_02244 [Escherichia coli KTE189]
gi|430972813|gb|ELC89781.1| hypothetical protein A13S_02581 [Escherichia coli KTE191]
gi|430982916|gb|ELC99605.1| hypothetical protein A15C_02825 [Escherichia coli KTE201]
gi|430987082|gb|ELD03630.1| hypothetical protein A15I_03118 [Escherichia coli KTE204]
gi|430993631|gb|ELD09975.1| hypothetical protein A15K_01991 [Escherichia coli KTE205]
gi|430998523|gb|ELD14764.1| hypothetical protein A15M_02191 [Escherichia coli KTE206]
gi|431006117|gb|ELD21124.1| hypothetical protein A15Q_02365 [Escherichia coli KTE208]
gi|431016134|gb|ELD29681.1| hypothetical protein A15Y_02221 [Escherichia coli KTE212]
gi|431024583|gb|ELD37748.1| hypothetical protein A173_03204 [Escherichia coli KTE214]
gi|431039717|gb|ELD50537.1| hypothetical protein A17E_01792 [Escherichia coli KTE220]
gi|431042839|gb|ELD53327.1| hypothetical protein A17M_02098 [Escherichia coli KTE224]
gi|431052098|gb|ELD61760.1| hypothetical protein A17U_01017 [Escherichia coli KTE228]
gi|431052461|gb|ELD62112.1| hypothetical protein A17Y_02254 [Escherichia coli KTE230]
gi|431070050|gb|ELD78370.1| hypothetical protein A195_01754 [Escherichia coli KTE235]
gi|431074776|gb|ELD82324.1| hypothetical protein A197_02139 [Escherichia coli KTE236]
gi|431080338|gb|ELD87143.1| hypothetical protein A199_02509 [Escherichia coli KTE237]
gi|431084249|gb|ELD90415.1| hypothetical protein A1S3_02460 [Escherichia coli KTE47]
gi|431091380|gb|ELD97117.1| hypothetical protein A1S7_02822 [Escherichia coli KTE49]
gi|431100852|gb|ELE05822.1| hypothetical protein A1SE_02586 [Escherichia coli KTE53]
gi|431105545|gb|ELE09880.1| hypothetical protein A1SK_04491 [Escherichia coli KTE56]
gi|431108723|gb|ELE12695.1| hypothetical protein A1SI_02711 [Escherichia coli KTE55]
gi|431116000|gb|ELE19461.1| hypothetical protein A1SM_03421 [Escherichia coli KTE57]
gi|431120599|gb|ELE23597.1| hypothetical protein A1SO_02621 [Escherichia coli KTE58]
gi|431128175|gb|ELE30467.1| hypothetical protein A1SS_02620 [Escherichia coli KTE60]
gi|431130828|gb|ELE32911.1| hypothetical protein A1SW_02679 [Escherichia coli KTE62]
gi|431141129|gb|ELE42894.1| hypothetical protein A1U5_02395 [Escherichia coli KTE66]
gi|431149165|gb|ELE50438.1| hypothetical protein A1UG_02099 [Escherichia coli KTE72]
gi|431155173|gb|ELE55934.1| hypothetical protein A1UM_02371 [Escherichia coli KTE75]
gi|431159882|gb|ELE60426.1| hypothetical protein A1UO_02059 [Escherichia coli KTE76]
gi|431171193|gb|ELE71374.1| hypothetical protein A1UW_02103 [Escherichia coli KTE80]
gi|431180542|gb|ELE80429.1| hypothetical protein A1W5_02255 [Escherichia coli KTE86]
gi|431182025|gb|ELE81852.1| hypothetical protein A1W1_02275 [Escherichia coli KTE83]
gi|431191365|gb|ELE90750.1| hypothetical protein A1W7_02505 [Escherichia coli KTE87]
gi|431192141|gb|ELE91515.1| hypothetical protein A1WE_02199 [Escherichia coli KTE93]
gi|431201715|gb|ELF00412.1| hypothetical protein A1Y3_02944 [Escherichia coli KTE116]
gi|431211136|gb|ELF09119.1| hypothetical protein A1Y7_02603 [Escherichia coli KTE119]
gi|431222808|gb|ELF20084.1| hypothetical protein A31A_02628 [Escherichia coli KTE156]
gi|431227404|gb|ELF24541.1| hypothetical protein A31G_04152 [Escherichia coli KTE161]
gi|431243577|gb|ELF37962.1| hypothetical protein A31Q_02633 [Escherichia coli KTE171]
gi|431244610|gb|ELF38918.1| hypothetical protein A31M_02108 [Escherichia coli KTE169]
gi|431249743|gb|ELF43898.1| hypothetical protein WCG_04285 [Escherichia coli KTE6]
gi|431257518|gb|ELF50442.1| hypothetical protein WCI_02085 [Escherichia coli KTE8]
gi|431262902|gb|ELF54891.1| hypothetical protein WCK_02708 [Escherichia coli KTE9]
gi|431265982|gb|ELF57544.1| hypothetical protein WE1_02462 [Escherichia coli KTE17]
gi|431273704|gb|ELF64778.1| hypothetical protein WE3_02464 [Escherichia coli KTE18]
gi|431275883|gb|ELF66910.1| hypothetical protein WGK_02543 [Escherichia coli KTE45]
gi|431282932|gb|ELF73801.1| hypothetical protein WGE_02732 [Escherichia coli KTE42]
gi|431283400|gb|ELF74259.1| hypothetical protein WEE_02395 [Escherichia coli KTE23]
gi|431292121|gb|ELF82617.1| hypothetical protein WGG_02090 [Escherichia coli KTE43]
gi|431297359|gb|ELF87017.1| hypothetical protein WEQ_01864 [Escherichia coli KTE29]
gi|431302948|gb|ELF92127.1| hypothetical protein WEA_01727 [Escherichia coli KTE22]
gi|431308953|gb|ELF97232.1| hypothetical protein A1S1_01902 [Escherichia coli KTE46]
gi|431316148|gb|ELG04047.1| hypothetical protein A1S9_03751 [Escherichia coli KTE50]
gi|431318773|gb|ELG06468.1| hypothetical protein A1SG_03148 [Escherichia coli KTE54]
gi|431327031|gb|ELG14376.1| hypothetical protein A1SQ_02546 [Escherichia coli KTE59]
gi|431329754|gb|ELG17040.1| hypothetical protein A1SY_02730 [Escherichia coli KTE63]
gi|431337540|gb|ELG24628.1| hypothetical protein A1U3_01938 [Escherichia coli KTE65]
gi|431339918|gb|ELG26972.1| hypothetical protein A1US_02392 [Escherichia coli KTE78]
gi|431343998|gb|ELG30954.1| hypothetical protein A1UU_03875 [Escherichia coli KTE79]
gi|431364739|gb|ELG51270.1| hypothetical protein A1Y1_02089 [Escherichia coli KTE115]
gi|431368107|gb|ELG54575.1| hypothetical protein A1Y5_02859 [Escherichia coli KTE118]
gi|431372653|gb|ELG58315.1| hypothetical protein A1YA_04124 [Escherichia coli KTE123]
gi|431375917|gb|ELG61240.1| hypothetical protein A1YM_03738 [Escherichia coli KTE135]
gi|431385323|gb|ELG69310.1| hypothetical protein A1YO_02321 [Escherichia coli KTE136]
gi|431400275|gb|ELG83657.1| hypothetical protein A1YY_01782 [Escherichia coli KTE144]
gi|431410562|gb|ELG93719.1| hypothetical protein A313_00780 [Escherichia coli KTE147]
gi|431411729|gb|ELG94840.1| hypothetical protein A317_04594 [Escherichia coli KTE154]
gi|431416956|gb|ELG99427.1| hypothetical protein A31C_02720 [Escherichia coli KTE158]
gi|431426648|gb|ELH08692.1| hypothetical protein A13U_02449 [Escherichia coli KTE192]
gi|431433472|gb|ELH15144.1| hypothetical protein A13Y_02449 [Escherichia coli KTE194]
gi|431440441|gb|ELH21770.1| hypothetical protein A13Q_02437 [Escherichia coli KTE190]
gi|431464271|gb|ELH44393.1| hypothetical protein A13C_00988 [Escherichia coli KTE183]
gi|431474958|gb|ELH54764.1| hypothetical protein A15E_02715 [Escherichia coli KTE202]
gi|431478845|gb|ELH58589.1| hypothetical protein A15S_04649 [Escherichia coli KTE209]
gi|431482864|gb|ELH62566.1| hypothetical protein A15O_02739 [Escherichia coli KTE207]
gi|431495098|gb|ELH74684.1| hypothetical protein A179_02795 [Escherichia coli KTE217]
gi|431501128|gb|ELH80114.1| hypothetical protein A175_02145 [Escherichia coli KTE215]
gi|431507381|gb|ELH85667.1| hypothetical protein A17A_02756 [Escherichia coli KTE218]
gi|431510261|gb|ELH88508.1| hypothetical protein A17K_02584 [Escherichia coli KTE223]
gi|431515335|gb|ELH93162.1| hypothetical protein A17S_03002 [Escherichia coli KTE227]
gi|431524463|gb|ELI01410.1| hypothetical protein A17W_00635 [Escherichia coli KTE229]
gi|431531551|gb|ELI08209.1| hypothetical protein WI5_01974 [Escherichia coli KTE104]
gi|431532837|gb|ELI09345.1| hypothetical protein WI7_01982 [Escherichia coli KTE105]
gi|431537425|gb|ELI13573.1| hypothetical protein WI9_01945 [Escherichia coli KTE106]
gi|431543168|gb|ELI18157.1| hypothetical protein WIA_02048 [Escherichia coli KTE109]
gi|431552388|gb|ELI26350.1| hypothetical protein WIE_02277 [Escherichia coli KTE113]
gi|431571035|gb|ELI43943.1| hypothetical protein WIM_02166 [Escherichia coli KTE124]
gi|431571400|gb|ELI44283.1| hypothetical protein WIK_02291 [Escherichia coli KTE122]
gi|431583210|gb|ELI55220.1| hypothetical protein WIO_02201 [Escherichia coli KTE125]
gi|431585169|gb|ELI57122.1| hypothetical protein WIQ_02157 [Escherichia coli KTE128]
gi|431588871|gb|ELI60141.1| hypothetical protein WIS_02101 [Escherichia coli KTE129]
gi|431597757|gb|ELI67663.1| hypothetical protein WIU_01962 [Escherichia coli KTE131]
gi|431603199|gb|ELI72626.1| hypothetical protein WIW_02019 [Escherichia coli KTE133]
gi|431606135|gb|ELI75517.1| hypothetical protein WIY_02061 [Escherichia coli KTE137]
gi|431620592|gb|ELI89469.1| hypothetical protein WK5_02022 [Escherichia coli KTE145]
gi|431628531|gb|ELI96907.1| hypothetical protein WK9_02095 [Escherichia coli KTE150]
gi|431635383|gb|ELJ03598.1| hypothetical protein WKA_02051 [Escherichia coli KTE153]
gi|431646879|gb|ELJ14371.1| hypothetical protein WKE_01995 [Escherichia coli KTE160]
gi|431646911|gb|ELJ14402.1| hypothetical protein WKG_02262 [Escherichia coli KTE163]
gi|431657311|gb|ELJ24277.1| hypothetical protein WKI_02168 [Escherichia coli KTE166]
gi|431661935|gb|ELJ28747.1| hypothetical protein WKM_01843 [Escherichia coli KTE167]
gi|431663084|gb|ELJ29852.1| hypothetical protein WKO_02076 [Escherichia coli KTE168]
gi|431671827|gb|ELJ38101.1| hypothetical protein WKQ_02161 [Escherichia coli KTE174]
gi|431675505|gb|ELJ41650.1| hypothetical protein WKS_01981 [Escherichia coli KTE176]
gi|431679048|gb|ELJ44966.1| hypothetical protein WKU_02093 [Escherichia coli KTE177]
gi|431688375|gb|ELJ53899.1| hypothetical protein WKY_02131 [Escherichia coli KTE180]
gi|431688847|gb|ELJ54365.1| hypothetical protein WKW_01970 [Escherichia coli KTE179]
gi|431693071|gb|ELJ58489.1| hypothetical protein WGQ_02111 [Escherichia coli KTE232]
gi|431704087|gb|ELJ68720.1| hypothetical protein WGM_02267 [Escherichia coli KTE82]
gi|431706780|gb|ELJ71350.1| hypothetical protein WGS_01813 [Escherichia coli KTE88]
gi|431707686|gb|ELJ72219.1| hypothetical protein WGO_02033 [Escherichia coli KTE85]
gi|431723209|gb|ELJ87171.1| hypothetical protein WGW_02092 [Escherichia coli KTE94]
gi|431734741|gb|ELJ98118.1| hypothetical protein WI3_02009 [Escherichia coli KTE99]
gi|432348434|gb|ELL42885.1| hypothetical protein B185_007392 [Escherichia coli J96]
gi|441605542|emb|CCP97661.1| FIG007491: hypothetical protein YeeN [Escherichia coli O10:K5(L):H4
str. ATCC 23506]
gi|441653929|emb|CCQ01130.1| FIG007491: hypothetical protein YeeN [Escherichia coli O5:K4(L):H4
str. ATCC 23502]
gi|441714988|emb|CCQ05553.1| FIG007491: hypothetical protein YeeN [Escherichia coli Nissle 1917]
gi|449318347|gb|EMD08420.1| hypothetical protein C202_09686 [Escherichia coli O08]
gi|449321018|gb|EMD11036.1| hypothetical protein A364_10305 [Escherichia coli SEPT362]
gi|449321317|gb|EMD11332.1| hypothetical protein C201_09024 [Escherichia coli S17]
Length = 238
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 130/244 (53%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ +A K+G P+P NT L V+E+AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGATSKIYAKFGVEIYAAAKQGEPDPELNTSLKFVIERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A G E F++ YE +G G I+ E LT + R++A VR + GG
Sbjct: 61 KHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMIIAETLTSNVNRTIANVRTIFNKKGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV + F V+ K TD D + +I L+A DV D T+E+ Y
Sbjct: 121 IGAAGSVSYMFDNTGVIVFKGTDP--DHIFEILLEAEV-DV------RDVTEEEGNIVIY 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+D + I L+ AGI + E++ + +E+ E +E+ + L+ L + DDV
Sbjct: 172 --TEPTDLHKGIAA-LKAAGITEFSTTELEMIAQSEVELSPEDLEIFEGLVDALEDDDDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QKVY 232
>gi|86359066|ref|YP_470958.1| hypothetical protein RHE_CH03475 [Rhizobium etli CFN 42]
gi|119391969|sp|Q2K4K5.1|Y3475_RHIEC RecName: Full=Probable transcriptional regulatory protein
RHE_CH03475
gi|86283168|gb|ABC92231.1| hypothetical conserved protein [Rhizobium etli CFN 42]
Length = 248
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 126/239 (52%), Gaps = 13/239 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++S++ +E+ A K G P+PT N L ++ AK +PKD ++R
Sbjct: 10 IMHRKGRQDAVRSKMFSKLAREITVAAKAGLPDPTMNARLRLAIQNAKAQSMPKDNIDRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A+ E + E YE YG GG +I+VE LTD R+ + VR + GG + + GSV
Sbjct: 70 IKKAAGADGENYDEVRYEGYGPGGTAIIVEALTDNRNRTASNVRSIFTKAGGALGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F + K D D++++ A++AGA+DV +TDE E +Y ++ +
Sbjct: 130 SFSFDHVGEITYKLAAGDADKVMEAAIEAGADDV--------ETDE---EGHY--ITCAF 176
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+K EA + + + VD+E + +LI L + DDV VY++
Sbjct: 177 EALGEVSKALEASLGEAETVKAVWRAQNNVPVDEEKAQSLMKLIDSLEDDDDVQNVYSN 235
>gi|338814877|ref|ZP_08626852.1| hypothetical protein ALO_21429 [Acetonema longum DSM 6540]
gi|337273182|gb|EGO61844.1| hypothetical protein ALO_21429 [Acetonema longum DSM 6540]
Length = 246
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 137/245 (55%), Gaps = 23/245 (9%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +KG DA K K+ +++ +E+ AVK GG +P N L L+KA+E ++PK+
Sbjct: 8 ANIKHKKGKMDAIKGKVTTKISREITIAVKNGGSDPAGNMRLKLALQKARENNIPKE--- 64
Query: 141 RNIKRASEKGQEA-----FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
NI+RA +KG A + E +YE YG GGV+I+++++TD R+ A +R + GG
Sbjct: 65 -NIQRAIQKGAGALDGSSYEEILYEGYGPGGVAIMLDIMTDNRNRTAADIRHLFSKHGGN 123
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ + G V + F + ++ ++ + AD++ L+ + LDAGAED + ED E +
Sbjct: 124 LGESGCVSWMFAQKGIIRVEKSAADEESLMLLVLDAGAEDF---------SAED--EEAF 172
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEV-DDEAMELNKELIAKLLELDD 314
++++ D + + L + I + + ++P TTI + D+A +L K L+ L E DD
Sbjct: 173 EIITAPDQFEAVHNALEASKITVASSEIT-MVPQTTIALAGDDAAKLIK-LVDALEEHDD 230
Query: 315 VDAVY 319
V VY
Sbjct: 231 VQEVY 235
>gi|375117281|ref|ZP_09762451.1| Integrase [Salmonella enterica subsp. enterica serovar Choleraesuis
str. SCSA50]
gi|322717427|gb|EFZ08998.1| Integrase [Salmonella enterica subsp. enterica serovar Choleraesuis
str. SCSA50]
Length = 238
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 129/244 (52%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ +A K+G P P SN+ L V+E+AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGATSKVYAKFGVEIYAAAKQGEPYPESNSALKFVIERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A G E F++ YE +G G ++ E LT + R++A +R + GG
Sbjct: 61 KHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMVIAETLTSNVNRTIANIRTIFNKKGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ G+V + F V I F D D + +I LDA DV D T+E+ Y
Sbjct: 121 IGAAGAVSYMFDNTGV--IVFKGTDPDHIFEILLDAEV-DV------RDVTEEEGNIVIY 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+D + I L+ AGI + E++ + +E+ E +E+ + L+ L + DDV
Sbjct: 172 --TEATDLHKGIAA-LKAAGITEFSTTELEMIAQSEVELSPEDLEIFEGLVDALEDDDDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QKVY 232
>gi|315924597|ref|ZP_07920816.1| glucose-1-phosphate adenylyltransferase [Pseudoramibacter
alactolyticus ATCC 23263]
gi|315622127|gb|EFV02089.1| glucose-1-phosphate adenylyltransferase [Pseudoramibacter
alactolyticus ATCC 23263]
Length = 241
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 133/241 (55%), Gaps = 15/241 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKG QDA + K++++M K + A ++GG +P N L + KAK ++P D ++
Sbjct: 8 NNIKQRKGKQDAARGKVFTKMAKLIAVAAREGGGDPEMNAKLREAVAKAKAANMPNDNID 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R +K+ S + +A E++ YE YG GG +++V+ LTD R+ A VR + GG +
Sbjct: 68 RAVKKGSGELNDAIYEEITYEGYGPGGAAVIVQTLTDNKNRTAADVRHIFDKNGGNLGTN 127
Query: 200 GSVMFKFRRA-RVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
G V F F RA R+ + D D+D+L+ ALDAGAED+ +T ED Y++
Sbjct: 128 GCVGFLFERAGRIFVEQSDDIDEDELMMTALDAGAEDM--------ETSEDG----YEIR 175
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+ + ++ + L+ AG+ + ++ +P T E+ +E + ++++ + DDV V
Sbjct: 176 TAASDFAQVLEALQNAGVSVASGEIAQ-IPSTESELSEEDSKKMEKMLDMFDDNDDVQEV 234
Query: 319 Y 319
+
Sbjct: 235 F 235
>gi|88856268|ref|ZP_01130928.1| hypothetical protein A20C1_03191 [marine actinobacterium PHSC20C1]
gi|88814587|gb|EAR24449.1| hypothetical protein A20C1_03191 [marine actinobacterium PHSC20C1]
Length = 252
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 135/239 (56%), Gaps = 16/239 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K D+++AK ++++ K + A K GG + + N L ++KAK+ VP D ++R +KR
Sbjct: 13 KKAITDSRRAKSFAKLIKNIEVAAKIGGADLSGNPTLVDAIQKAKKTSVPNDNIDRAVKR 72
Query: 146 ASEKGQEA--FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S + +A ++ +YE YG GV++++E LTD R+ A VR ++ GG +ADPGSV
Sbjct: 73 GSGQLGDAIEYLNIMYEGYGPNGVALMIECLTDNKNRAAADVRTIMSRNGGSLADPGSVA 132
Query: 204 FKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
+ F R V++I T+ +D++L LDAGAE+V ++ E ++V++ +
Sbjct: 133 YNFERKGVISITKTEGVTEDEILMAVLDAGAEEV-----------KNHGEG-FEVITDTA 180
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ L+EAGI +++ +E +P +EVD + LI L E DDV +Y++
Sbjct: 181 HLVQSRDALQEAGIDYDSSE-AEFVPNLKVEVDADTARKVFRLIDALEESDDVQNIYSN 238
>gi|433480264|ref|ZP_20437549.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 63041]
gi|432214596|gb|ELK70494.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 63041]
Length = 242
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/252 (34%), Positives = 135/252 (53%), Gaps = 30/252 (11%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +K QDAK+ K+++R+ KE+ A + GG +P +N L LEKA E ++PKD V+
Sbjct: 8 ANIQHKKARQDAKRGKIFTRLIKEITVAARMGGGDPGANPRLRLALEKAAENNIPKDNVQ 67
Query: 141 RNIKRASE--KGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMAD 198
R I + + +G E +IE YE YG GG +++V+ LTD TR+VA VR GG +
Sbjct: 68 RAIDKGTGNLEGVE-YIELRYEGYGIGGAALMVDCLTDNKTRTVADVRHAFTKNGGNLGT 126
Query: 199 PGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
G V F F + + D+D L++ AL+AGAEDV+ N+D + E V+
Sbjct: 127 DGCVAFNFVHQGYLVFE-PGVDEDALMEAALEAGAEDVV---TNDDGSIE--------VI 174
Query: 259 STSDNYTDITTKLREAG-------IPFETDNGSELLPITTIEVDDEAMELNKELIAKLLE 311
+ +++ + + L AG + N +EL D+A+++ K LI L +
Sbjct: 175 TAPNDWAGVKSALEAAGYKSVDGDVTMRAQNETEL-------SGDDAVKMQK-LIDALED 226
Query: 312 LDDVDAVYTDQI 323
LDDV VYT +
Sbjct: 227 LDDVQDVYTSAV 238
>gi|418737147|ref|ZP_13293545.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
borgpetersenii serovar Castellonis str. 200801910]
gi|410747306|gb|EKR00212.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
borgpetersenii serovar Castellonis str. 200801910]
Length = 249
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 133/237 (56%), Gaps = 13/237 (5%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A D+K+ +++R+GKE+ A K GG +P N L + KAK +++PKD +ER IK+
Sbjct: 13 KKDAIDSKRGAIFTRVGKEITVAAKMGGGDPEGNPRLRLAILKAKSVNMPKDNIERAIKK 72
Query: 146 ASEKGQEAFIEK-VYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMF 204
+ + + E+ +YE +G G++I+V +TDK +R+ ++ ++ GG +A GSV
Sbjct: 73 GTGELEGVVYEECLYECFGPAGIAIMVSAVTDKKSRTTPEIKSILTKLGGSLATSGSVSR 132
Query: 205 KFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNY 264
F + V+ ++ + +D+L+DIA+ GAEDVI NE + Y+V++T D+Y
Sbjct: 133 LFEKKGVIVLESSQIGEDKLVDIAVGEGAEDVI----NEGEV--------YRVITTPDDY 180
Query: 265 TDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ L E G+ E + +++ D E E +LI +L DDV +V ++
Sbjct: 181 ESVLHALNEKGLKSEESEIRYIALVSSEIADKEVAEKVMKLIEQLDGHDDVTSVTSN 237
>gi|225010724|ref|ZP_03701193.1| protein of unknown function DUF28 [Flavobacteria bacterium
MS024-3C]
gi|225005095|gb|EEG43048.1| protein of unknown function DUF28 [Flavobacteria bacterium
MS024-3C]
Length = 237
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 131/244 (53%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR RK + + +K ++R+GK+++ AVK+GGP+P SN+ L AV++ AK +++P
Sbjct: 1 MGRAFEFRKARKMKRWSAMSKAFTRIGKDIVMAVKEGGPDPDSNSRLRAVIQNAKAVNMP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
KD VER IKRAS+K + E ++E Y G++I+VE TD TR+VA +R C G
Sbjct: 61 KDNVERAIKRASDKSLGDYKEVLFEGYAPHGIAILVETATDNNTRTVANIRSYFNKCNGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
M GSV F F I D D ++L +D GAE+V DE+ Y
Sbjct: 121 MGTSGSVEFMFDHTCNFRIPAGDLDPEELELELIDFGAEEVF--------VDEEEGILIY 172
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+ +++ I +L G+ +G E +P T ++ +E ++L+ K+ E DDV
Sbjct: 173 ---APFESFGAIQKELESRGLEI-LSSGFERIPQVTKQLTEEEAADVEKLLEKIEEDDDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QNVY 232
>gi|84501557|ref|ZP_00999729.1| hypothetical protein OB2597_15185 [Oceanicola batsensis HTCC2597]
gi|84390178|gb|EAQ02737.1| hypothetical protein OB2597_15185 [Oceanicola batsensis HTCC2597]
Length = 246
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/240 (34%), Positives = 125/240 (52%), Gaps = 17/240 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKG QDA ++KL+S++ KE+ A K G P+P N L +++AK VPKD++E
Sbjct: 8 ANIQHRKGRQDAARSKLFSKLSKEITVAAKMGDPDPDKNPRLRLAVKEAKSQSVPKDVIE 67
Query: 141 RNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
R IK++ + + E YE YG GV+++VE +TD R+ + VR GG + + G
Sbjct: 68 RAIKKSQAGDGDDYEEIRYEGYGPNGVAVIVEAMTDNRNRTASNVRSTFSKNGGNLGETG 127
Query: 201 SVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
SV F F R V D D +L A++AGAEDV ++ ED Y
Sbjct: 128 SVGFMFERKGEVTYPAEVGDADTVLMAAIEAGAEDV--------ESTEDGHYIYCADTDL 179
Query: 261 SDNYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+D + T+L E+ ++L+ P TT E+D + M+ +LI L + DDV V
Sbjct: 180 NDVAGALETELGES-------ESTKLIWKPTTTTEMDLDGMQKLMKLIEALEDDDDVQRV 232
>gi|408828110|ref|ZP_11213000.1| hypothetical protein SsomD4_13053 [Streptomyces somaliensis DSM
40738]
Length = 250
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 129/240 (53%), Gaps = 19/240 (7%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K DAK+ KL++++ K + A + GG +P N L ++KAK+ VP ++ +KR
Sbjct: 13 KKAVIDAKRGKLFAKLIKNIEVAARTGGGDPEGNPTLYDAIQKAKKQSVPNKNIDSAVKR 72
Query: 146 ASEKGQEA----FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
S GQEA + +YE YG GV++++E LTD R+ + VR + GG MADPGS
Sbjct: 73 GS--GQEAGGADYETIMYEGYGPNGVAVLIECLTDNRNRAASDVRVAMTRNGGSMADPGS 130
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
V + F R VV + +D +L LDAGAE+V D E ++V+S +
Sbjct: 131 VSYLFNRKGVVILPKGGLTEDDVLGAVLDAGAEEV-----------NDLGET-FEVISEA 178
Query: 262 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ + T L++AGI +E+ S +P +E+D+E +LI L + DDV V+ +
Sbjct: 179 TDLVAVRTALQDAGIDYESAEAS-FVPTMQVELDEEGARKIFKLIDALEDSDDVQNVFAN 237
>gi|197119678|ref|YP_002140105.1| hypothetical protein Gbem_3313 [Geobacter bemidjiensis Bem]
gi|226703778|sp|B5EAH0.1|Y3313_GEOBB RecName: Full=Probable transcriptional regulatory protein Gbem_3313
gi|197089038|gb|ACH40309.1| protein of unknown function DUF28 [Geobacter bemidjiensis Bem]
Length = 247
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/246 (34%), Positives = 137/246 (55%), Gaps = 19/246 (7%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ S I +KGA DAK+ K+++++ KE+ A K GG +P N L ++KAK ++PKD
Sbjct: 6 KWSTIKHKKGAADAKRGKVFTKIIKEITVAAKLGGGDPDGNPRLRTAIDKAKGENMPKDN 65
Query: 139 VERNIKRASEKGQEA--FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKM 196
VER IK+ G E + E YE YG GG +++VEV+TD R+V+ VR + C G M
Sbjct: 66 VERAIKKGV-GGLEGTTYEETTYEGYGPGGTAVLVEVMTDNRNRTVSDVRSIFTKCNGNM 124
Query: 197 ADPGSVMFKF-RRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ G V + F ++ +V K D DK L + +++AGA+DV TDED Y
Sbjct: 125 GESGCVSWLFDKKGLLVFPKSIDFDK--LFEASIEAGADDV---------TDEDEQ---Y 170
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+V++ + + T L AG E+ + ++P T ++++ + E +L+ ++ + DDV
Sbjct: 171 EVLTDPAAFHQVKTALEGAGFKAESAEIT-MIPQTMVKLEGKNAENMLKLMDRMEDNDDV 229
Query: 316 DAVYTD 321
VY +
Sbjct: 230 QNVYAN 235
>gi|417272946|ref|ZP_12060295.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
2.4168]
gi|425115372|ref|ZP_18517178.1| hypothetical protein EC80566_2030 [Escherichia coli 8.0566]
gi|425120089|ref|ZP_18521793.1| hypothetical protein EC80569_1987 [Escherichia coli 8.0569]
gi|386236646|gb|EII68622.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
2.4168]
gi|408569100|gb|EKK45106.1| hypothetical protein EC80566_2030 [Escherichia coli 8.0566]
gi|408570472|gb|EKK46447.1| hypothetical protein EC80569_1987 [Escherichia coli 8.0569]
Length = 238
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 130/244 (53%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ +A K+G P+P NT L V+E+AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGATSKIYAKFGVEIYAAAKQGEPDPELNTSLKFVIERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A G E F++ YE +G G I+ E LT + R++A VR + GG
Sbjct: 61 KHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMIIAETLTSNVNRTIANVRTIFNKKGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV + F V+ K TD D + +I L+A DV D T+E+ Y
Sbjct: 121 IGAAGSVSYMFDNTGVIVFKGTDP--DHIFEILLEAEV-DV------RDVTEEEGNIVIY 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+D + I L+ AGI + E++ + +E+ E +E+ + L+ L + DDV
Sbjct: 172 --TEPTDLHKGIAA-LKTAGITEFSTTELEMIAQSEVELSPEDLEIFEGLVDALEDDDDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QKVY 232
>gi|423069209|ref|ZP_17057996.1| hypothetical protein HMPREF9682_01217 [Streptococcus intermedius
F0395]
gi|423071286|ref|ZP_17060061.1| hypothetical protein HMPREF9177_01378 [Streptococcus intermedius
F0413]
gi|424788327|ref|ZP_18215082.1| hypothetical protein D593_1504 [Streptococcus intermedius BA1]
gi|355364648|gb|EHG12380.1| hypothetical protein HMPREF9177_01378 [Streptococcus intermedius
F0413]
gi|355365097|gb|EHG12823.1| hypothetical protein HMPREF9682_01217 [Streptococcus intermedius
F0395]
gi|422112830|gb|EKU16592.1| hypothetical protein D593_1504 [Streptococcus intermedius BA1]
Length = 238
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 126/249 (50%), Gaps = 18/249 (7%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ A KKG P+P SN+ L V+E+AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGANSKVYAKFGVEIYVAAKKGEPDPESNSALKFVIERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ + +A E F E YE +G G ++V+ LT + R+ A VR GG
Sbjct: 61 KHVIDKALDKAKGNTDETFTEGRYEGFGPNGSMLIVDTLTSNVNRTAANVRSAFGKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
M GSV + F V I FT D D + + L+A D D D E
Sbjct: 121 MGASGSVSYMFDNKGV--IVFTGDDADSVFEQLLEA-------------DVDVDDVEAED 165
Query: 256 KVVSTSDNYTDI---TTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLEL 312
++ TD+ T LRE+G+ E++P + + + E +E ++L A L +
Sbjct: 166 GTITVYTAPTDLHKALTALRESGVEEFQVTELEMIPQSDVTLSGEDLETFEKLYAVLEDD 225
Query: 313 DDVDAVYTD 321
+DV +YT+
Sbjct: 226 EDVQKIYTN 234
>gi|270293418|ref|ZP_06199627.1| putative cytoplasmic protein [Streptococcus sp. M143]
gi|315612456|ref|ZP_07887369.1| protein of hypothetical function DUF28 [Streptococcus sanguinis
ATCC 49296]
gi|331267062|ref|YP_004326692.1| hypothetical protein SOR_1701 [Streptococcus oralis Uo5]
gi|406578183|ref|ZP_11053722.1| hypothetical protein GMD6S_08688 [Streptococcus sp. GMD6S]
gi|406586715|ref|ZP_11061640.1| hypothetical protein GMD1S_02661 [Streptococcus sp. GMD1S]
gi|417940446|ref|ZP_12583734.1| DNA-binding regulatory protein, YebC/PmpR family [Streptococcus
oralis SK313]
gi|419779143|ref|ZP_14305022.1| transcriptional regulator, YeeN [Streptococcus oralis SK10]
gi|419781642|ref|ZP_14307460.1| transcriptional regulator, YeeN [Streptococcus oralis SK100]
gi|419814950|ref|ZP_14339670.1| hypothetical protein GMD2S_06422 [Streptococcus sp. GMD2S]
gi|419817467|ref|ZP_14341627.1| hypothetical protein GMD4S_04213 [Streptococcus sp. GMD4S]
gi|270278267|gb|EFA24115.1| putative cytoplasmic protein [Streptococcus sp. M143]
gi|315315437|gb|EFU63476.1| protein of hypothetical function DUF28 [Streptococcus sanguinis
ATCC 49296]
gi|326683734|emb|CBZ01352.1| conserved hypothetical protein [Streptococcus oralis Uo5]
gi|343389327|gb|EGV01912.1| DNA-binding regulatory protein, YebC/PmpR family [Streptococcus
oralis SK313]
gi|383184130|gb|EIC76658.1| transcriptional regulator, YeeN [Streptococcus oralis SK100]
gi|383186571|gb|EIC79038.1| transcriptional regulator, YeeN [Streptococcus oralis SK10]
gi|404457999|gb|EKA04469.1| hypothetical protein GMD6S_08688 [Streptococcus sp. GMD6S]
gi|404465923|gb|EKA11294.1| hypothetical protein GMD4S_04213 [Streptococcus sp. GMD4S]
gi|404470378|gb|EKA15016.1| hypothetical protein GMD2S_06422 [Streptococcus sp. GMD2S]
gi|404473798|gb|EKA18124.1| hypothetical protein GMD1S_02661 [Streptococcus sp. GMD1S]
Length = 238
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 126/246 (51%), Gaps = 12/246 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ A KKG P+P SNT L V+++AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGANSKVYAKFGVEIYVAAKKGDPDPESNTALKFVIDRAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A E F E YE +G G ++V+ LT + R+ A VR GG
Sbjct: 61 KHVIDKAIDKAKGNTDETFTEGRYEGFGPNGSMLIVDTLTSNVNRTAANVRAAFGKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
M GSV + F V+ DA DA E ++E V+ DD + + E
Sbjct: 121 MGASGSVSYLFDNKGVIVFAGEDA----------DAVFEQLLEADVDVDDVEAE--EGTI 168
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
V + + LRE+GI E++P + +E+ E +E ++L + L + +DV
Sbjct: 169 TVYTAPTDLHKAIVALRESGIEEFQVTELEMIPQSEVELSGEDLETFEKLYSVLEDDEDV 228
Query: 316 DAVYTD 321
+YT+
Sbjct: 229 QKIYTN 234
>gi|395779146|ref|ZP_10459648.1| UPF0082 protein [Bartonella elizabethae Re6043vi]
gi|423715986|ref|ZP_17690203.1| UPF0082 protein [Bartonella elizabethae F9251]
gi|395416326|gb|EJF82708.1| UPF0082 protein [Bartonella elizabethae Re6043vi]
gi|395428295|gb|EJF94375.1| UPF0082 protein [Bartonella elizabethae F9251]
Length = 248
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 125/240 (52%), Gaps = 15/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++S++ +E+ A K+G P+P N L ++ AK +PKD +ER
Sbjct: 10 IMHRKGRQDAMRSKIFSKLAREITVAAKQGAPDPAMNPRLRLAVQNAKAQSMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+AS E + E YE YG GGV+++VE LTD R+ + VR GG + + GSV
Sbjct: 70 IKKASGTDVENYDEVRYEGYGPGGVAVIVEALTDNRNRTASNVRAAFTKSGGALGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R + K D ++D A++AGAEDV E + + +
Sbjct: 130 SFMFNRIGEIIYKPEAGTADNIMDAAIEAGAEDV------------QSEETGHHITCAFE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELN-KELIAKLLELDDVDAVYTD 321
+ +++ L EA + E ++ + TT+ DE L+ LI+ L E DDV VY +
Sbjct: 178 DIGEVSKTL-EAKLG-EAESIKTIWKATTLAPIDEEKALSVLRLISTLEEDDDVQNVYAN 235
>gi|15639465|ref|NP_218915.1| hypothetical protein TP0474 [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189025705|ref|YP_001933477.1| hypothetical protein TPASS_0474 [Treponema pallidum subsp. pallidum
SS14]
gi|338706436|ref|YP_004673204.1| hypothetical protein TPCCA_0474 [Treponema paraluiscuniculi
Cuniculi A]
gi|378972981|ref|YP_005221585.1| hypothetical protein TPESAMD_0474 [Treponema pallidum subsp.
pertenue str. SamoaD]
gi|378974048|ref|YP_005222654.1| hypothetical protein TPEGAU_0474 [Treponema pallidum subsp.
pertenue str. Gauthier]
gi|378975109|ref|YP_005223717.1| hypothetical protein TPADAL_0474 [Treponema pallidum subsp.
pallidum DAL-1]
gi|378981957|ref|YP_005230262.1| hypothetical protein TPECDC2_0474 [Treponema pallidum subsp.
pertenue str. CDC2]
gi|384421991|ref|YP_005631350.1| hypothetical protein TPChic_0474 [Treponema pallidum subsp.
pallidum str. Chicago]
gi|408502348|ref|YP_006869792.1| hypothetical protein TPAMA_0474 [Treponema pallidum subsp. pallidum
str. Mexico A]
gi|6226380|sp|O83487.1|Y474_TREPA RecName: Full=Probable transcriptional regulatory protein TP_0474
gi|226706230|sp|B2S369.1|Y474_TREPS RecName: Full=Probable transcriptional regulatory protein
TPASS_0474
gi|3322762|gb|AAC65461.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189018280|gb|ACD70898.1| hypothetical protein TPASS_0474 [Treponema pallidum subsp. pallidum
SS14]
gi|291059857|gb|ADD72592.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum
str. Chicago]
gi|335344497|gb|AEH40413.1| conserved hypothetical protein [Treponema paraluiscuniculi Cuniculi
A]
gi|374677304|gb|AEZ57597.1| hypothetical protein TPESAMD_0474 [Treponema pallidum subsp.
pertenue str. SamoaD]
gi|374678374|gb|AEZ58666.1| hypothetical protein TPECDC2_0474 [Treponema pallidum subsp.
pertenue str. CDC2]
gi|374679443|gb|AEZ59734.1| hypothetical protein TPEGAU_0474 [Treponema pallidum subsp.
pertenue str. Gauthier]
gi|374680507|gb|AEZ60797.1| hypothetical protein TPADAL_0474 [Treponema pallidum subsp.
pallidum DAL-1]
gi|408475711|gb|AFU66476.1| hypothetical protein TPAMA_0474 [Treponema pallidum subsp. pallidum
str. Mexico A]
Length = 245
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 127/237 (53%), Gaps = 16/237 (6%)
Query: 87 KGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRA 146
KGA DAK+ +L+++ KE+ A + G +P +N L + KA+ ++PKD +ER IK+
Sbjct: 14 KGAADAKRGQLFTKFIKEISVAARMAGGDPQANPRLRTAILKARAANMPKDNIERAIKKG 73
Query: 147 S-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 205
+ E ++ E VYE Y GGV+++VEVLTD R+ A VR + GG + GSV +
Sbjct: 74 TGELSGSSYEELVYEGYAPGGVAVLVEVLTDNKNRAAANVRNLFSRNGGNLGSAGSVSYM 133
Query: 206 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 265
F R V+ D++ L+++AL+AGAED+ A V + +
Sbjct: 134 FNRKGVIEYDSEQVDEEALMELALEAGAEDI------------QNAGGVLTVTTVPGTFE 181
Query: 266 DITTKLREAGIPFET-DNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ L+ G +E+ G ++P T + +D+E ++I +L E +DV AVY++
Sbjct: 182 TVLESLQAKG--WESLSAGISMVPDTYLALDEETARKVLKMIDRLEEEEDVQAVYSN 236
>gi|421094068|ref|ZP_15554789.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
borgpetersenii str. 200801926]
gi|410363209|gb|EKP14241.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
borgpetersenii str. 200801926]
gi|456886713|gb|EMF97839.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
borgpetersenii str. 200701203]
Length = 249
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 133/237 (56%), Gaps = 13/237 (5%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A D+K+ +++R+GKE+ A K GG +P N L + KAK +++PKD +ER IK+
Sbjct: 13 KKDAIDSKRGAIFTRVGKEITVAAKMGGGDPEGNPRLRLAILKAKSVNMPKDNIERAIKK 72
Query: 146 ASEKGQEAFIEK-VYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMF 204
+ + + E+ +YE +G G++I+V +TDK +R+ ++ ++ GG +A GSV
Sbjct: 73 GTGELEGVVYEECLYECFGPAGIAIMVSAVTDKKSRTTPEIKSILTKLGGSLATSGSVSR 132
Query: 205 KFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNY 264
F + V+ ++ + +D+L+D+A+ GAEDVI NE + Y+V++T D+Y
Sbjct: 133 LFEKKGVIVLESSQIGEDKLVDLAVGGGAEDVI----NEGEV--------YRVITTPDDY 180
Query: 265 TDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ L E G+ E + +++ D E E +LI +L DDV +V ++
Sbjct: 181 ESVLHALNEKGLKSEESEIRYIALVSSEIADKEVAEKVMKLIEQLDGHDDVTSVTSN 237
>gi|326791289|ref|YP_004309110.1| hypothetical protein Clole_2199 [Clostridium lentocellum DSM 5427]
gi|326542053|gb|ADZ83912.1| protein of unknown function DUF28 [Clostridium lentocellum DSM
5427]
Length = 243
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 113/199 (56%), Gaps = 15/199 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +K DA+K K+++++G+E+ AVK+GG +P+ N L+ V+ KAK ++P D ++
Sbjct: 8 ANIKHKKAKNDAQKGKVFTKIGREIAVAVKEGGADPSLNRKLSDVIAKAKSNNMPNDTIQ 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R+IK+A+ G E + YE YG GV+++VE LTD RS A VR G M
Sbjct: 68 RSIKKAAGDGDNVHYEYITYEGYGPSGVAVIVETLTDNKNRSAANVRSYFTKGNGNMGTT 127
Query: 200 GSVMFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G V F F + V+ + TD D+D+L+ +A++AGA+D + E Y +
Sbjct: 128 GCVSFMFDKKGQIVIEKEATDMDEDELMMMAIEAGADDF------------EAEEEGYTI 175
Query: 258 VSTSDNYTDITTKLREAGI 276
++ ++++D+ L AGI
Sbjct: 176 TTSPESFSDVHAALEAAGI 194
>gi|257464829|ref|ZP_05629200.1| hypothetical protein AM202_06235 [Actinobacillus minor 202]
gi|257450489|gb|EEV24532.1| hypothetical protein AM202_06235 [Actinobacillus minor 202]
Length = 246
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 136/241 (56%), Gaps = 17/241 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDA++ K+++++ +E+++A K GG + SN L A ++KA ++ +D +
Sbjct: 8 ANIKHRKAAQDAQRGKIFTKLIRELVTAAKLGGGDVGSNPRLRAAVDKALSNNMTRDTIN 67
Query: 141 RNIKRASEKGQEAFIE-KVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I R G + +E K+YE YG GG +++VE L+D R+++ VR CGG +
Sbjct: 68 RAIDRGVGGGDDTNMETKIYEGYGPGGTAVMVECLSDNANRTISQVRPSFTKCGGNLGTE 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F + ++ I AD+D L + A++AGA+D I+P ED + +++ +
Sbjct: 128 GSVGYLFSKKGLILI--ASADEDALTEAAIEAGADD-IQP--QEDGS--------FEIYT 174
Query: 260 TSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
++ + + AG F+ +N ++P TT+++D E +LI +L + DDV V
Sbjct: 175 AWEDLGSVRDGIEAAG--FKVENAEVTMIPSTTVQLDAETAPKLLDLINRLEDCDDVQNV 232
Query: 319 Y 319
Y
Sbjct: 233 Y 233
>gi|23502575|ref|NP_698702.1| hypothetical protein BR1717 [Brucella suis 1330]
gi|62290589|ref|YP_222382.1| hypothetical protein BruAb1_1702 [Brucella abortus bv. 1 str.
9-941]
gi|82700505|ref|YP_415079.1| hypothetical protein BAB1_1729 [Brucella melitensis biovar Abortus
2308]
gi|148558985|ref|YP_001259569.1| hypothetical protein BOV_1660 [Brucella ovis ATCC 25840]
gi|161511160|ref|NP_539238.2| hypothetical protein BMEI0321 [Brucella melitensis bv. 1 str. 16M]
gi|161619645|ref|YP_001593532.1| hypothetical protein BCAN_A1755 [Brucella canis ATCC 23365]
gi|163845296|ref|YP_001622951.1| hypothetical protein BSUIS_B1192 [Brucella suis ATCC 23445]
gi|189024806|ref|YP_001935574.1| hypothetical protein BAbS19_I16160 [Brucella abortus S19]
gi|225853172|ref|YP_002733405.1| hypothetical protein BMEA_A1769 [Brucella melitensis ATCC 23457]
gi|256263338|ref|ZP_05465870.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
63/9]
gi|260547169|ref|ZP_05822907.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
gi|260565783|ref|ZP_05836266.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
gi|260568800|ref|ZP_05839268.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
gi|260755416|ref|ZP_05867764.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
gi|260758638|ref|ZP_05870986.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
gi|260762470|ref|ZP_05874807.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260884431|ref|ZP_05896045.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
gi|261214686|ref|ZP_05928967.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
gi|261219305|ref|ZP_05933586.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261222839|ref|ZP_05937120.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|261315916|ref|ZP_05955113.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|261316222|ref|ZP_05955419.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|261322366|ref|ZP_05961563.1| hypothetical protein BAIG_02940 [Brucella ceti M644/93/1]
gi|261325756|ref|ZP_05964953.1| conserved hypothetical protein [Brucella neotomae 5K33]
gi|261750872|ref|ZP_05994581.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
gi|261754125|ref|ZP_05997834.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
gi|265984733|ref|ZP_06097468.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|265987283|ref|ZP_06099840.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
gi|265991750|ref|ZP_06104307.1| hypothetical protein BAMG_03049 [Brucella melitensis bv. 1 str.
Rev.1]
gi|265995588|ref|ZP_06108145.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|265998798|ref|ZP_06111355.1| conserved hypothetical protein [Brucella ceti M490/95/1]
gi|306839911|ref|ZP_07472707.1| conserved hypothetical protein [Brucella sp. NF 2653]
gi|306841437|ref|ZP_07474138.1| conserved hypothetical protein [Brucella sp. BO2]
gi|306844708|ref|ZP_07477293.1| conserved hypothetical protein [Brucella inopinata BO1]
gi|340791316|ref|YP_004756781.1| hypothetical protein BPI_I1777 [Brucella pinnipedialis B2/94]
gi|376272559|ref|YP_005151137.1| hypothetical protein BAA13334_I01235 [Brucella abortus A13334]
gi|376275680|ref|YP_005116119.1| hypothetical protein BCA52141_I2449 [Brucella canis HSK A52141]
gi|376281370|ref|YP_005155376.1| hypothetical protein BSVBI22_A1713 [Brucella suis VBI22]
gi|384212074|ref|YP_005601157.1| hypothetical protein [Brucella melitensis M5-90]
gi|384225362|ref|YP_005616526.1| hypothetical protein BS1330_I1711 [Brucella suis 1330]
gi|384409181|ref|YP_005597802.1| hypothetical protein BM28_A1717 [Brucella melitensis M28]
gi|423169319|ref|ZP_17156020.1| UPF0082 protein [Brucella abortus bv. 1 str. NI435a]
gi|423172532|ref|ZP_17159205.1| UPF0082 protein [Brucella abortus bv. 1 str. NI474]
gi|423175668|ref|ZP_17162336.1| UPF0082 protein [Brucella abortus bv. 1 str. NI486]
gi|423178774|ref|ZP_17165417.1| UPF0082 protein [Brucella abortus bv. 1 str. NI488]
gi|423181906|ref|ZP_17168545.1| UPF0082 protein [Brucella abortus bv. 1 str. NI010]
gi|423185093|ref|ZP_17171728.1| UPF0082 protein [Brucella abortus bv. 1 str. NI016]
gi|423188247|ref|ZP_17174859.1| UPF0082 protein [Brucella abortus bv. 1 str. NI021]
gi|423191387|ref|ZP_17177994.1| UPF0082 protein [Brucella abortus bv. 1 str. NI259]
gi|54040269|sp|P67174.1|Y1717_BRUSU RecName: Full=Probable transcriptional regulatory protein
BR1717/BS1330_I1711
gi|54042646|sp|P67173.1|Y321_BRUME RecName: Full=Probable transcriptional regulatory protein BMEI0321
gi|75496331|sp|Q57BG3.1|Y1702_BRUAB RecName: Full=Probable transcriptional regulatory protein
BruAb1_1702
gi|119391283|sp|Q2YRF2.1|Y1729_BRUA2 RecName: Full=Probable transcriptional regulatory protein BAB1_1729
gi|166234699|sp|A5VS72.1|Y1660_BRUO2 RecName: Full=Probable transcriptional regulatory protein BOV_1660
gi|189039000|sp|A9M7L4.1|Y1755_BRUC2 RecName: Full=Probable transcriptional regulatory protein
BCAN_A1755
gi|189040292|sp|A9WWJ3.1|Y3692_BRUSI RecName: Full=Probable transcriptional regulatory protein
BSUIS_B1192
gi|254800621|sp|C0REX9.1|Y1769_BRUMB RecName: Full=Probable transcriptional regulatory protein
BMEA_A1769
gi|23348577|gb|AAN30617.1| conserved hypothetical protein TIGR01033 [Brucella suis 1330]
gi|62196721|gb|AAX75021.1| conserved hypothetical protein TIGR01033 [Brucella abortus bv. 1
str. 9-941]
gi|82616606|emb|CAJ11685.1| Protein of unknown function DUF28 [Brucella melitensis biovar
Abortus 2308]
gi|148370242|gb|ABQ60221.1| conserved hypothetical protein TIGR01033 [Brucella ovis ATCC 25840]
gi|161336456|gb|ABX62761.1| conserved hypothetical protein [Brucella canis ATCC 23365]
gi|163676019|gb|ABY40129.1| conserved hypothetical protein [Brucella suis ATCC 23445]
gi|189020378|gb|ACD73100.1| Protein of unknown function DUF28 [Brucella abortus S19]
gi|225641537|gb|ACO01451.1| conserved hypothetical protein [Brucella melitensis ATCC 23457]
gi|260095534|gb|EEW79412.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
gi|260151156|gb|EEW86251.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
gi|260154184|gb|EEW89266.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
gi|260668956|gb|EEX55896.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
gi|260672896|gb|EEX59717.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260675524|gb|EEX62345.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
gi|260873959|gb|EEX81028.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
gi|260916293|gb|EEX83154.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
gi|260921423|gb|EEX88076.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|260924394|gb|EEX90962.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261295056|gb|EEX98552.1| hypothetical protein BAIG_02940 [Brucella ceti M644/93/1]
gi|261295445|gb|EEX98941.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|261301736|gb|EEY05233.1| conserved hypothetical protein [Brucella neotomae 5K33]
gi|261304942|gb|EEY08439.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|261740625|gb|EEY28551.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
gi|261743878|gb|EEY31804.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
gi|262553487|gb|EEZ09256.1| conserved hypothetical protein [Brucella ceti M490/95/1]
gi|262766872|gb|EEZ12490.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|263002706|gb|EEZ15109.1| hypothetical protein BAMG_03049 [Brucella melitensis bv. 1 str.
Rev.1]
gi|263093337|gb|EEZ17406.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
63/9]
gi|264659480|gb|EEZ29741.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
gi|264663325|gb|EEZ33586.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|306274880|gb|EFM56650.1| conserved hypothetical protein [Brucella inopinata BO1]
gi|306288475|gb|EFM59830.1| conserved hypothetical protein [Brucella sp. BO2]
gi|306404978|gb|EFM61261.1| conserved hypothetical protein [Brucella sp. NF 2653]
gi|326409728|gb|ADZ66793.1| conserved hypothetical protein [Brucella melitensis M28]
gi|326539438|gb|ADZ87653.1| conserved hypothetical protein [Brucella melitensis M5-90]
gi|340559775|gb|AEK55013.1| hypothetical protein BPI_I1777 [Brucella pinnipedialis B2/94]
gi|343383542|gb|AEM19034.1| hypothetical protein BS1330_I1711 [Brucella suis 1330]
gi|358258969|gb|AEU06704.1| hypothetical protein BSVBI22_A1713 [Brucella suis VBI22]
gi|363400165|gb|AEW17135.1| hypothetical protein BAA13334_I01235 [Brucella abortus A13334]
gi|363404247|gb|AEW14542.1| hypothetical protein BCA52141_I2449 [Brucella canis HSK A52141]
gi|374535102|gb|EHR06629.1| UPF0082 protein [Brucella abortus bv. 1 str. NI486]
gi|374535295|gb|EHR06821.1| UPF0082 protein [Brucella abortus bv. 1 str. NI474]
gi|374535505|gb|EHR07027.1| UPF0082 protein [Brucella abortus bv. 1 str. NI435a]
gi|374544661|gb|EHR16130.1| UPF0082 protein [Brucella abortus bv. 1 str. NI488]
gi|374544828|gb|EHR16293.1| UPF0082 protein [Brucella abortus bv. 1 str. NI010]
gi|374545070|gb|EHR16534.1| UPF0082 protein [Brucella abortus bv. 1 str. NI016]
gi|374552898|gb|EHR24320.1| UPF0082 protein [Brucella abortus bv. 1 str. NI021]
gi|374553092|gb|EHR24513.1| UPF0082 protein [Brucella abortus bv. 1 str. NI259]
Length = 248
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 126/239 (52%), Gaps = 13/239 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++S++ +E+ A K+G P+P N L ++ AK +PKD +ER
Sbjct: 10 IMHRKGRQDAVRSKMFSKLAREITVAAKQGLPDPAMNPRLRLAIQNAKAQSMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A+ E + E YE G GGVS++VE LTD R+ + VR GG + + GSV
Sbjct: 70 IKKAAGNDGENYDEVRYEGRGPGGVSVIVEALTDNRNRTASNVRAAFTKSGGSLGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R + K D D++++ A++AGAEDV E + ++ +
Sbjct: 130 SFMFDRVGEIVYKPEAGDADKVMEAAIEAGAEDV------------QSGEDGHVILCAFE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ +++ L EA + + P T E+D+E +L++ L + DDV VYT+
Sbjct: 178 DIGEVSKAL-EAALGEAESIKTIWKPQTNTELDEEKARSVLKLLSVLEDDDDVQNVYTN 235
>gi|399044776|ref|ZP_10738331.1| DNA-binding regulatory protein, YebC/PmpR family [Rhizobium sp.
CF122]
gi|398056741|gb|EJL48726.1| DNA-binding regulatory protein, YebC/PmpR family [Rhizobium sp.
CF122]
Length = 248
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 125/239 (52%), Gaps = 13/239 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++S++ +E+ A K G P+PT N L ++ AK +PKD ++R
Sbjct: 10 IMHRKGRQDAVRSKMFSKLAREITVAAKAGLPDPTMNARLRLAIQNAKAQSMPKDNIDRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A+ E + E YE YG GG +I+VE LTD R+ + VR + GG + + GSV
Sbjct: 70 IKKAAGADSENYDEVRYEGYGPGGTAIIVEALTDNRNRTASNVRSIFTKAGGALGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F + K D D++++ A++AGA+DV +TDE E +Y ++T+
Sbjct: 130 SFSFDHVGEITYKLAAGDADRVMEAAIEAGADDV--------ETDE---EGHY--ITTAF 176
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
K E + + + VD+E + +LI L + DDV VY++
Sbjct: 177 ESLGEVAKALEGSLGEAETVKAVWRAQNNVPVDEEKAQSLLKLIDSLEDDDDVQNVYSN 235
>gi|261757369|ref|ZP_06001078.1| conserved hypothetical protein [Brucella sp. F5/99]
gi|261737353|gb|EEY25349.1| conserved hypothetical protein [Brucella sp. F5/99]
Length = 248
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 126/239 (52%), Gaps = 13/239 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++S++ +E+ A K+G P+P N L ++ AK +PKD +ER
Sbjct: 10 IMHRKGRQDAVRSKMFSKLAREITVAAKQGLPDPAMNPRLRLAIQNAKAQSMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A+ E + E YE G GGVS++VE LTD R+ + VR GG + + GSV
Sbjct: 70 IKKAAGNDGENYDEVRYEGRGPGGVSVIVEALTDNRNRTASNVRAAFTKSGGSLGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R + K D D++++ A++AGAEDV E + ++ +
Sbjct: 130 SFMFDRVGEIIYKPEAGDADKVMEAAIEAGAEDV------------QSGEDGHVILCAFE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ +++ L EA + + P T E+D+E +L++ L + DDV VYT+
Sbjct: 178 DIGEVSKAL-EAALGEAESIKTIWKPQTNTELDEEKARSVLKLLSVLEDDDDVQNVYTN 235
>gi|375096058|ref|ZP_09742323.1| DNA-binding regulatory protein, YebC/PmpR family [Saccharomonospora
marina XMU15]
gi|374656791|gb|EHR51624.1| DNA-binding regulatory protein, YebC/PmpR family [Saccharomonospora
marina XMU15]
Length = 249
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 126/238 (52%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++R+ K + A + GG +P N L ++KAK+ VP+D +ER KR
Sbjct: 13 KKAALDAKRGKLFARLIKNIEVAARTGGGDPEGNPTLYDAIQKAKKNSVPQDNIERARKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
+ E G + YE Y GV++++E LTD R+ + VR + GG +ADPGSV
Sbjct: 73 GAGEEAGGADWQNITYEGYAPNGVAVLIECLTDNKNRAASEVRTALTRNGGSLADPGSVA 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R VV + +D +L LDAGAE+V +D E ++++S + +
Sbjct: 133 YLFNRKGVVIMPKNGLSEDDVLLAVLDAGAEEV-------NDLGES-----FEIISEAGD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ L++AG +E+ + + LP + +D E LI L + DDV VY++
Sbjct: 181 LVAVRKALQDAGYDYESAD-ANFLPSVNVPLDAEGARKVFRLIEALEDCDDVQNVYSN 237
>gi|358062982|ref|ZP_09149611.1| hypothetical protein HMPREF9473_01673 [Clostridium hathewayi
WAL-18680]
gi|356698845|gb|EHI60376.1| hypothetical protein HMPREF9473_01673 [Clostridium hathewayi
WAL-18680]
Length = 242
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/221 (34%), Positives = 125/221 (56%), Gaps = 18/221 (8%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +K DA K K+++ +G+E+ AVK+GG +P +N+ L V+ KAK ++P D ++
Sbjct: 8 ANIKHKKERNDAAKGKVFTVIGREIAVAVKEGGADPANNSKLRDVIAKAKANNMPNDTID 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+A+ E + YE YG GV+I+V+ LTD R+ A VR G + P
Sbjct: 68 RGIKKAAGDANSVNYEVLTYEGYGPNGVAIIVDTLTDNKNRTAANVRSAFTKGSGNVGTP 127
Query: 200 GSV--MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV MF + +++ + + D D+L+ ALDAGAED E E+D+ +++
Sbjct: 128 GSVSYMFDKKGQIIIDKEECEMDPDELMMAALDAGAEDFAE----EEDS--------FEI 175
Query: 258 VSTSDNYTDITTKLREAGIP-FETDNGSELLPITTIEVDDE 297
++ D+++ + L AGIP E D ++P T +E+DDE
Sbjct: 176 LTAPDDFSAVREALEAAGIPMMEAD--VTMIPQTWVELDDE 214
>gi|306828852|ref|ZP_07462044.1| protein of hypothetical function DUF28 [Streptococcus mitis ATCC
6249]
gi|304429030|gb|EFM32118.1| protein of hypothetical function DUF28 [Streptococcus mitis ATCC
6249]
Length = 238
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 126/249 (50%), Gaps = 18/249 (7%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ A KKG P+P SNT L V+++AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGANSKVYAKFGVEIYVAAKKGDPDPESNTALKFVIDRAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A E F E YE +G G ++V+ LT + R+ A VR GG
Sbjct: 61 KHVIDKAIDKAKGNTDETFTEGRYEGFGPNGSMLIVDTLTSNVNRTAANVRAAFGKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
M GSV + F V I F D D + ++ L+A D D D E
Sbjct: 121 MGASGSVSYLFDNKGV--IVFAGEDADAIFELLLEA-------------DVDVDDVEAEE 165
Query: 256 KVVSTSDNYTDI---TTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLEL 312
++ TD+ LRE+GI E++P + +E+ + +E ++L + L +
Sbjct: 166 GTITVYTAPTDLHKAIVALRESGIQEFQVTELEMIPQSEVELSGDDLETFEKLYSVLEDD 225
Query: 313 DDVDAVYTD 321
+DV +YT+
Sbjct: 226 EDVQKIYTN 234
>gi|82776450|ref|YP_402799.1| hypothetical protein SDY_1151 [Shigella dysenteriae Sd197]
gi|309789260|ref|ZP_07683853.1| conserved hypothetical protein [Shigella dysenteriae 1617]
gi|119392018|sp|Q32H97.1|YEBC_SHIDS RecName: Full=Probable transcriptional regulatory protein YebC
gi|81240598|gb|ABB61308.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
gi|308923014|gb|EFP68528.1| conserved hypothetical protein [Shigella dysenteriae 1617]
Length = 246
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 127/235 (54%), Gaps = 15/235 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
RK AQDAK+ K+++++ +E+++A K GG +P +N L A ++KA ++ +D + R I R
Sbjct: 13 RKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNNMTRDTLNRAIAR 72
Query: 146 ASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMF 204
+A +E + YE YG GG +I++E L+D R+VA VR CGG + GSV +
Sbjct: 73 GVGGDDDANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTDGSVAY 132
Query: 205 KFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNY 264
F + V I F D+D +++ AL+AGAEDV+ T +D A V + +
Sbjct: 133 LFSKKGV--ISFEKGDEDTIMEAALEAGAEDVV--------TYDDGA---IDVYTAWEEM 179
Query: 265 TDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ L AG+ ++ S +LP T ++D E LI L + DDV VY
Sbjct: 180 GKVRDALEAAGLKADSAEVS-MLPSTKADMDAETAPKLMRLIDMLEDCDDVQEVY 233
>gi|419482945|ref|ZP_14022730.1| DNA-binding regulatory family protein, YebC/PmpR [Streptococcus
pneumoniae GA40563]
gi|379578410|gb|EHZ43322.1| DNA-binding regulatory family protein, YebC/PmpR [Streptococcus
pneumoniae GA40563]
Length = 238
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 126/246 (51%), Gaps = 12/246 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ A KKG P+P SN+ L V+++AK++ VP
Sbjct: 1 MGRKWANIVAKKTAKDGANSKVYAKFGVEIYVAAKKGDPDPESNSALKFVIDRAKQVQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K I+++ I +A E F E YE +G G ++V+ LT + R+ A VR GG
Sbjct: 61 KHIIDKAIDKAKGNTDETFTEGRYEGFGPNGSMLIVDTLTSNVNRTAANVRAAFGKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
M GSV + F V+ DA DA E ++E V+ DD + E
Sbjct: 121 MGASGSVSYLFDNKGVIVFGGEDA----------DAVFEQLLEADVDVDDV--EAQEGTI 168
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
V + + LRE+GI E++P + +E+ E +E ++L + L + +DV
Sbjct: 169 TVYTAPTDLHKAIVALRESGIEEFQVTELEMIPQSEVELSGEDLETFEKLYSVLEDDEDV 228
Query: 316 DAVYTD 321
+YT+
Sbjct: 229 QKIYTN 234
>gi|359414383|ref|ZP_09206848.1| UPF0082 protein yeeN [Clostridium sp. DL-VIII]
gi|357173267|gb|EHJ01442.1| UPF0082 protein yeeN [Clostridium sp. DL-VIII]
Length = 246
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 115/215 (53%), Gaps = 13/215 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I +KG DAK+ K+++++GKE++ AVK GG N +N L V+ KAK ++P D + +
Sbjct: 10 IQAKKGKTDAKRGKIFTKIGKEIVMAVKNGGANQDTNAKLRDVVAKAKAANMPNDTISKA 69
Query: 143 IKRASEKGQEAFIEK-VYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+AS + E VYE YG GV+++VE LTD RS VR GG M G
Sbjct: 70 IKKASGELSSVNYENIVYEGYGPNGVAVIVETLTDNKNRSAGNVRSAFTKGGGNMGTTGC 129
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
V F F+ + I+ D D+++++ +ALDAGAED DED + V +
Sbjct: 130 VSFMFQEKGEIVIEKVDKDEEEMMMMALDAGAEDF--------SADEDEV---FVVTTAP 178
Query: 262 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDD 296
+++ + L G+ F + +++P T +D+
Sbjct: 179 EDFGQVREALEAQGVEF-LEASVKMIPDTYTAIDE 212
>gi|217978451|ref|YP_002362598.1| hypothetical protein Msil_2305 [Methylocella silvestris BL2]
gi|254801297|sp|B8EIB7.1|Y2305_METSB RecName: Full=Probable transcriptional regulatory protein Msil_2305
gi|217503827|gb|ACK51236.1| protein of unknown function DUF28 [Methylocella silvestris BL2]
Length = 248
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 123/239 (51%), Gaps = 13/239 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I +KG QDA ++KL+S++ +E+ A K G P+P N L A + A+ ++PKD +ER
Sbjct: 10 IMHKKGKQDAIRSKLFSKLAREITVAAKLGLPDPNMNARLRAAVIAARVENMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+AS E + E YE YG GGV+++VE LTD R+ +R GG +A+ G+V
Sbjct: 70 IKKASGADAENYDEVRYEGYGPGGVAVIVEALTDNRNRTAGEIRSYFTKVGGALAETGAV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F + ++ +L+ A++AGAEDV+ E ++V+++ +
Sbjct: 130 SFMFDHIGRIEFPAKVGSEEAMLEAAIEAGAEDVLS------------GEEGHEVLTSLE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
D+ L EA T P TI +DDE E LI L + DDV VY +
Sbjct: 178 MLRDVALAL-EAKFGEPTRASLIWKPQNTISLDDETGEKVLRLIGLLEDNDDVQNVYAN 235
>gi|187778346|ref|ZP_02994819.1| hypothetical protein CLOSPO_01938 [Clostridium sporogenes ATCC
15579]
gi|187771971|gb|EDU35773.1| DNA-binding regulatory protein, YebC/PmpR family [Clostridium
sporogenes ATCC 15579]
Length = 246
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 122/217 (56%), Gaps = 15/217 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I +KG DAK+ K+++++GKE++ AVK+GGP+ SN L V+ KAK ++P D +ER+
Sbjct: 10 IQAKKGKVDAKRGKIFTKIGKEIVVAVKQGGPSADSNPRLRDVIAKAKANNMPNDTIERS 69
Query: 143 IKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+AS + E + YE YG G++++V+VLTD RS VR GG M G
Sbjct: 70 IKKASGELNAVDYETITYEGYGPAGIAVLVDVLTDNKNRSAGNVRYAFTKQGGNMGSTGC 129
Query: 202 VMFKFR-RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
V F F+ + ++V K D+D+L+ +ALDAGAED + + Y V ++
Sbjct: 130 VSFMFQSKGQIVIEKKDGLDEDELMMMALDAGAEDF------------ESEDEVYVVTTS 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDE 297
+++ + L G+ F + +++P T +D++
Sbjct: 178 QEDFGTVREALESEGLEF-LEAEIKMVPDTYTAIDED 213
>gi|169824590|ref|YP_001692201.1| hypothetical protein FMG_0893 [Finegoldia magna ATCC 29328]
gi|226696014|sp|B0S1S1.1|Y893_FINM2 RecName: Full=Probable transcriptional regulatory protein FMG_0893
gi|167831395|dbj|BAG08311.1| conserved hypothetical protein [Finegoldia magna ATCC 29328]
Length = 241
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 138/243 (56%), Gaps = 21/243 (8%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
SKI +KG++DA++ K++++M + + AV++GG +P N L +V+EKA+ ++P D ++
Sbjct: 8 SKIKNKKGSEDARRGKIFTKMARAITVAVREGGADPEYNPSLKSVIEKARAENMPNDNID 67
Query: 141 RNIKRASEKGQEAFIEK-VYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+AS G A E VYE YG GV+++VE LTD R+ + VR GG +
Sbjct: 68 RAIKKASGDGDSANYENIVYEGYGPEGVAVIVECLTDNRNRTASDVRHYFDKFGGNLGQN 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV F F+R ++ I D+++++ +LDAGAED A+ V++
Sbjct: 128 GSVSFMFQRKGLLLIDADSLDEEEVMMDSLDAGAEDF-------------EADDGIFVIN 174
Query: 260 TS-DNYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEA-MELNKELIAKLLELDDV 315
T+ +++ + L + G F S+L+ P ++++DE+ ++ ++LI L + DDV
Sbjct: 175 TAMEDFAQVRDTLLDKGYKFVK---SDLVYEPSNYVKINDESNVDKMEKLIDNLEDSDDV 231
Query: 316 DAV 318
V
Sbjct: 232 QQV 234
>gi|445127952|ref|ZP_21379944.1| hypothetical protein SEEG9184_022026 [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
gi|444855604|gb|ELX80649.1| hypothetical protein SEEG9184_022026 [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
Length = 238
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 131/244 (53%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K ++D +K+Y++ G E+ +A K+G P+P SN+ L V+E+AK+ VP
Sbjct: 1 MGRKWANIVAKKTSKDGATSKVYAKFGVEIYAAAKQGEPDPESNSALKFVIERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A G E F++ YE +G G ++ E LT + R++A +R + GG
Sbjct: 61 KHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMVIAETLTSNVNRTIANIRTIFNKKGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ G+V + F V+ K TD D + +I LDA DV D T+E+ Y
Sbjct: 121 IGAAGAVSYMFDNTGVIVFKGTDP--DHIFEILLDAEV-DV------RDVTEEEGNIVIY 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+D + I L+ AGI + E++ + +E+ E +E+ + L+ L + DDV
Sbjct: 172 --TEATDLHKGIAA-LKAAGITEFSTTELEMIAQSEVELSPEDLEIFEGLVDALEDDDDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QKVY 232
>gi|268595178|ref|ZP_06129345.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268684680|ref|ZP_06151542.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|385336069|ref|YP_005890016.1| hypothetical protein NGTW08_1185 [Neisseria gonorrhoeae
TCDC-NG08107]
gi|268548567|gb|EEZ43985.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268624964|gb|EEZ57364.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|317164612|gb|ADV08153.1| hypothetical protein NGTW08_1185 [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 242
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/252 (34%), Positives = 136/252 (53%), Gaps = 30/252 (11%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +K QDAK+ K+++R+ KE+ A + GG +P +N L LEKA E ++PKD V+
Sbjct: 8 ANIQHKKARQDAKRGKIFTRLIKEITVAARMGGGDPGANPRLRLALEKAAENNMPKDNVQ 67
Query: 141 RNIKRASE--KGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMAD 198
R I + + +G E +I YE YG GG +++V+ LTD TR+VA VR GG +
Sbjct: 68 RAIDKGTGNLEGVE-YIGLRYEGYGIGGAALMVDCLTDNKTRTVADVRHAFTKNGGNLGT 126
Query: 199 PGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
G V F F + + D+D+L++ AL+AGAEDV+ N+D + E V+
Sbjct: 127 DGCVAFNFVHQGYLVFE-PGVDEDELMEAALEAGAEDVV---TNDDGSIE--------VI 174
Query: 259 STSDNYTDITTKLREAG-------IPFETDNGSELLPITTIEVDDEAMELNKELIAKLLE 311
+ +++ + + L AG + T N +EL D+A+++ K LI L +
Sbjct: 175 TAPNDWAGVKSALEAAGYKSVDGDVTMRTQNETEL-------SGDDAVKMQK-LIDALED 226
Query: 312 LDDVDAVYTDQI 323
LDDV VYT +
Sbjct: 227 LDDVQDVYTSAV 238
>gi|120611861|ref|YP_971539.1| hypothetical protein Aave_3203 [Acidovorax citrulli AAC00-1]
gi|326316863|ref|YP_004234535.1| hypothetical protein Acav_2055 [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|166229404|sp|A1TS27.1|Y3203_ACIAC RecName: Full=Probable transcriptional regulatory protein Aave_3203
gi|120590325|gb|ABM33765.1| protein of unknown function DUF28 [Acidovorax citrulli AAC00-1]
gi|323373699|gb|ADX45968.1| UPF0082 protein yeeN [Acidovorax avenae subsp. avenae ATCC 19860]
Length = 239
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 135/242 (55%), Gaps = 18/242 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKG QD K+ K+++R+ +E+ A + GG + ++N L ++KAK ++P D ++
Sbjct: 8 ANIQHRKGRQDEKRGKIWTRIIREITVAARAGGGDVSANPRLRLAIDKAKAANMPADRIK 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
NI +A+ + E++ YE YG GG +I+V+ +TD R+VA VR GG M
Sbjct: 68 YNIDKATGNAEGLTYEEIRYEGYGIGGAAIIVDTMTDNRVRTVAEVRHAFSKYGGNMGTE 127
Query: 200 GSVMFKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
GSV F+F+ V + F +D+++++AL+AGAEDV+ TDED A +V+
Sbjct: 128 GSVAFQFK--HVGQLIFAPGTSEDKVMEVALEAGAEDVV--------TDEDGA---IEVL 174
Query: 259 STSDNYTDITTKLREAGI-PFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
+ ++ + L AG+ P D + P TI++ E E ++L+ + +LDDV
Sbjct: 175 TAPGDFEAVKNALEAAGLTPDAAD--VTMRPDVTIDLAGEDAERMQKLLDVIEDLDDVQE 232
Query: 318 VY 319
VY
Sbjct: 233 VY 234
>gi|389693704|ref|ZP_10181798.1| DNA-binding regulatory protein, YebC/PmpR family [Microvirga sp.
WSM3557]
gi|388587090|gb|EIM27383.1| DNA-binding regulatory protein, YebC/PmpR family [Microvirga sp.
WSM3557]
Length = 248
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 126/239 (52%), Gaps = 17/239 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG DA ++K++S++ +E+ A K G P+P N L A + A+ ++PKD ++R
Sbjct: 10 IMHRKGKVDAVRSKVFSKLAREITVAAKMGMPDPNMNPRLRAAILAARAENMPKDNIQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
I +AS E + E YE YG GG +I+VE +TD R+ + +R GG +A+ G+V
Sbjct: 70 INKASGGDAENYDEIRYEGYGPGGAAIIVEAMTDNRNRTASDIRSYFTKSGGNLAETGAV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R + AD D +L+ A+DAGA+DV+ +E +++
Sbjct: 130 SFMFDRVGYIEFGPDVADADAMLEAAIDAGADDVV------------SSENGHEIYCDQG 177
Query: 263 NYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ ++T L + F S+L+ P T + VDDE E +L+ L E DDV +VY
Sbjct: 178 SLNEVTKALEDK---FGEPKASKLVWKPQTPVAVDDETGEKLMKLMESLEEHDDVQSVY 233
>gi|315918542|ref|ZP_07914782.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
25563]
gi|317059562|ref|ZP_07924047.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
gi|313685238|gb|EFS22073.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
gi|313692417|gb|EFS29252.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
25563]
Length = 249
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 120/219 (54%), Gaps = 14/219 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RKGAQD K+AKL+++ G+E+ A K+GG +P N L +EKAK ++PKDI
Sbjct: 6 KWNNIQHRKGAQDKKRAKLFTKFGRELTIAAKEGGGDPNFNPRLRLAIEKAKAGNMPKDI 65
Query: 139 VERNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
+ER IK+ + + + F E YE YG G + +V+V+TD RS + VR V GG +
Sbjct: 66 LERAIKKGTGELEGVDFTEIRYEGYGPAGTAFIVDVVTDNKNRSASEVRTVFSRKGGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G+V + F++ ++ + D D+ + AL+AGAEDV TDE ++V
Sbjct: 126 ADGAVSWMFKKLGIIEVASEGLDLDEFMMAALEAGAEDV---------TDEGET---FEV 173
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDD 296
V+ + L+ AG + T+ ++P +E+ D
Sbjct: 174 VTDYTQLQTVAENLKAAGYTY-TEAEISMVPDNKVEITD 211
>gi|283785602|ref|YP_003365467.1| hypothetical protein ROD_19051 [Citrobacter rodentium ICC168]
gi|282949056|emb|CBG88659.1| conserved hypothetical protein [Citrobacter rodentium ICC168]
Length = 247
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 128/235 (54%), Gaps = 15/235 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
RK AQDAK+ K+++++ +E+++A K GG +P +N L A ++KA ++ +D + R I R
Sbjct: 13 RKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAIDKALANNMTRDTLNRAIAR 72
Query: 146 ASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMF 204
+A +E + YE YG GG +I+VE L+D R+VA VR CGG + GSV +
Sbjct: 73 GVGGDDDANMETIIYEGYGPGGTAIMVECLSDNRNRTVAEVRHAFSKCGGNLGTDGSVAY 132
Query: 205 KFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNY 264
F + V I F D+D +++ AL+AGAEDV+ T +D A V + ++
Sbjct: 133 LFSKKGV--ISFEQGDEDTIMEAALEAGAEDVV--------TYDDGA---IDVYTAWEDM 179
Query: 265 TDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ L AG+ ++ S ++P T ++D E LI L + DDV VY
Sbjct: 180 GKVRDALEAAGLKADSAEVS-MIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVY 233
>gi|13473370|ref|NP_104937.1| hypothetical protein mll3945 [Mesorhizobium loti MAFF303099]
gi|33517090|sp|Q98F44.1|Y3945_RHILO RecName: Full=Probable transcriptional regulatory protein mll3945
gi|14024119|dbj|BAB50723.1| mll3945 [Mesorhizobium loti MAFF303099]
Length = 249
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 130/241 (53%), Gaps = 17/241 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++S++ +E+ A K G P+P+ N L ++ AK + +PKD ++R
Sbjct: 10 IMHRKGRQDAVRSKMFSKLAREITVAAKSGTPDPSMNPRLRLAIQNAKAVSMPKDNIQRA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
I +AS E + YE YG GGV+++VE LTD RS + VR GG M + GSV
Sbjct: 70 INKASMGDAENYEAVRYEGYGPGGVAVIVEALTDNRNRSASNVRAAFTKAGGAMGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F + R + + D++++ A++AGA+DV ++DE+ + + +
Sbjct: 130 SFMWDRVGEIYYPASAGSADKVMEAAIEAGADDV--------ESDEEG----HTIYCAFE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDVDAVYT 320
N +++ L A E+ +L+ P + VD+E + +L+A L + DDV +VY
Sbjct: 178 NLGEVSKALEAALGEAES---VKLIWRPQNNVPVDEERAQSLMKLVATLEDDDDVQSVYA 234
Query: 321 D 321
+
Sbjct: 235 N 235
>gi|340754970|ref|ZP_08691697.1| hypothetical protein FSEG_00447 [Fusobacterium sp. D12]
gi|421500202|ref|ZP_15947214.1| DNA-binding regulatory protein, YebC/PmpR family [Fusobacterium
necrophorum subsp. funduliforme Fnf 1007]
gi|313686005|gb|EFS22840.1| hypothetical protein FSEG_00447 [Fusobacterium sp. D12]
gi|402268806|gb|EJU18170.1| DNA-binding regulatory protein, YebC/PmpR family [Fusobacterium
necrophorum subsp. funduliforme Fnf 1007]
Length = 249
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 121/217 (55%), Gaps = 14/217 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKGAQD K+AKL+++ G+E+ A K+GG +P+ N L +EKAK ++PKDI+E
Sbjct: 8 NNIQHRKGAQDRKRAKLFTKFGRELTIAAKEGGGDPSFNPRLRLAIEKAKAGNMPKDILE 67
Query: 141 RNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+ + + + F E YE YG G + +V+V+TD RS + VR V GG +
Sbjct: 68 RAIKKGTGELEGVDFTEIRYEGYGPAGTAFIVDVVTDNKNRSASEVRTVFSRKGGNLGAD 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
G+V + F++ ++ + D D+ + AL+AGAEDV TDE + ++VV+
Sbjct: 128 GAVSWMFKKLGIIEVASEGLDLDEFMMAALEAGAEDV---------TDEGDS---FEVVT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDD 296
+ L+ AG + T+ ++P +E+ D
Sbjct: 176 DYTQLQTVAENLKAAGYTY-TEAEISMVPDNKVEITD 211
>gi|118467795|ref|YP_887259.1| hypothetical protein MSMEG_2940 [Mycobacterium smegmatis str. MC2
155]
gi|399987276|ref|YP_006567625.1| hypothetical protein MSMEI_2866 [Mycobacterium smegmatis str. MC2
155]
gi|441208041|ref|ZP_20973802.1| hypothetical protein D806_2988 [Mycobacterium smegmatis MKD8]
gi|166228930|sp|A0QWH1.1|Y2940_MYCS2 RecName: Full=Probable transcriptional regulatory protein
MSMEG_2940/MSMEI_2866
gi|118169082|gb|ABK69978.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2
155]
gi|399231837|gb|AFP39330.1| UPF0082 protein [Mycobacterium smegmatis str. MC2 155]
gi|440627776|gb|ELQ89583.1| hypothetical protein D806_2988 [Mycobacterium smegmatis MKD8]
Length = 251
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 126/238 (52%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K DAK+ K+++++ K + A + GG +P N L ++KAK+ VP D +ER KR
Sbjct: 13 KKAVIDAKRGKMFAKLIKNIEVAARVGGGDPGGNPTLYDAIQKAKKSSVPNDNIERARKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
+ E G + YE YG GV+++VE LTD R+ VR + GG MADPGSV
Sbjct: 73 GAGEEAGGADWQNITYEGYGPNGVAVLVECLTDNRNRAAGEVRVAMTRNGGNMADPGSVA 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R VV ++ +D +L L+AGAE+V D D ++++S +
Sbjct: 133 YLFSRKGVVTLEKNGLTEDDVLLAVLEAGAEEV------NDLGDS------FEIISEPSD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ T L+EAGI +++ + S P T+ VD E +L+ L + DDV VYT+
Sbjct: 181 LVAVRTALQEAGIDYDSADAS-FQPSVTVPVDLEGARKVLKLVDALEDSDDVQDVYTN 237
>gi|24113379|ref|NP_707889.1| hypothetical protein SF2054 [Shigella flexneri 2a str. 301]
gi|30063439|ref|NP_837610.1| hypothetical protein S2161 [Shigella flexneri 2a str. 2457T]
gi|110805970|ref|YP_689490.1| hypothetical protein SFV_2054 [Shigella flexneri 5 str. 8401]
gi|384543659|ref|YP_005727722.1| protein yeeN [Shigella flexneri 2002017]
gi|415855432|ref|ZP_11530788.1| hypothetical protein SF2457T_1743 [Shigella flexneri 2a str. 2457T]
gi|417702653|ref|ZP_12351767.1| hypothetical protein SFK218_2908 [Shigella flexneri K-218]
gi|417723487|ref|ZP_12372298.1| hypothetical protein SFK304_2650 [Shigella flexneri K-304]
gi|417728836|ref|ZP_12377542.1| hypothetical protein SFK671_2502 [Shigella flexneri K-671]
gi|417732787|ref|ZP_12381452.1| hypothetical protein SF274771_1183 [Shigella flexneri 2747-71]
gi|417738932|ref|ZP_12387514.1| hypothetical protein SF434370_2269 [Shigella flexneri 4343-70]
gi|417743827|ref|ZP_12392355.1| conserved protein [Shigella flexneri 2930-71]
gi|418256774|ref|ZP_12880582.1| hypothetical protein SF660363_2416 [Shigella flexneri 6603-63]
gi|420342258|ref|ZP_14843743.1| hypothetical protein SFK404_2851 [Shigella flexneri K-404]
gi|424838377|ref|ZP_18263014.1| hypothetical protein SF5M90T_1998 [Shigella flexneri 5a str. M90T]
gi|33516995|sp|Q83KK3.1|YEEN_SHIFL RecName: Full=Probable transcriptional regulatory protein YeeN
gi|24052396|gb|AAN43596.1| conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|30041692|gb|AAP17419.1| hypothetical protein S2161 [Shigella flexneri 2a str. 2457T]
gi|110615518|gb|ABF04185.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
gi|281601445|gb|ADA74429.1| protein yeeN [Shigella flexneri 2002017]
gi|313649772|gb|EFS14195.1| hypothetical protein SF2457T_1743 [Shigella flexneri 2a str. 2457T]
gi|332755782|gb|EGJ86141.1| hypothetical protein SF434370_2269 [Shigella flexneri 4343-70]
gi|332756937|gb|EGJ87281.1| hypothetical protein SFK671_2502 [Shigella flexneri K-671]
gi|332760010|gb|EGJ90311.1| hypothetical protein SF274771_1183 [Shigella flexneri 2747-71]
gi|332766509|gb|EGJ96717.1| conserved protein [Shigella flexneri 2930-71]
gi|333002965|gb|EGK22520.1| hypothetical protein SFK218_2908 [Shigella flexneri K-218]
gi|333017356|gb|EGK36673.1| hypothetical protein SFK304_2650 [Shigella flexneri K-304]
gi|383467429|gb|EID62450.1| hypothetical protein SF5M90T_1998 [Shigella flexneri 5a str. M90T]
gi|391267041|gb|EIQ25979.1| hypothetical protein SFK404_2851 [Shigella flexneri K-404]
gi|397897681|gb|EJL14085.1| hypothetical protein SF660363_2416 [Shigella flexneri 6603-63]
Length = 238
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 130/244 (53%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ +A K+G P+P NT L V+E+AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGATSKIYAKFGVEIYAAAKQGEPDPELNTSLKFVIERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A G E F++ YE +G G I+ E LT + R++A VR + GG
Sbjct: 61 KHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMIIAETLTSNVNRTIANVRTIFNKKGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV + F V+ K TD D + +I L+A DV D T+E+ Y
Sbjct: 121 IGAAGSVSYMFDNTGVIVFKGTDP--DHIFEILLEAEV-DV------RDVTEEEGNIVIY 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+D + I L+ AGI + E++ + +E+ E +E+ + L+ L + DDV
Sbjct: 172 --TEPADLHKGIAA-LKAAGITEFSTTELEMIAQSEVELSPEDLEIFEGLVDALEDDDDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QKVY 232
>gi|374605411|ref|ZP_09678341.1| hypothetical protein PDENDC454_20572 [Paenibacillus dendritiformis
C454]
gi|374389021|gb|EHQ60413.1| hypothetical protein PDENDC454_20572 [Paenibacillus dendritiformis
C454]
Length = 237
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 132/246 (53%), Gaps = 16/246 (6%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K ++D +++Y+R G+E+ A K+G PNP SN L V+E+AK +VP
Sbjct: 1 MGRKWNNIKEKKASKDTNTSRIYARFGREIYVAAKQGEPNPESNQALKFVIERAKTYNVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K I++R +++A E + E YE +G G ++V+ LT+ + R+ + VR GG
Sbjct: 61 KAIIDRAVEKAKGGSDENYDELRYEGFGPNGTMVIVDALTNNVNRTASEVRAAFNKNGGS 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAE--DVIEPPVNEDDTDEDRAER 253
+ GSV + F + V+ ++ A +++L+I ++A + D++E ED+T
Sbjct: 121 LGVSGSVNYMFDQTAVIGLEGKTA--EEVLEILMNADLDVRDILE----EDET------- 167
Query: 254 YYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELD 313
+ + D + + LREAG T +LP T + + ++ ++I L +LD
Sbjct: 168 -VIIYAEPDQFHAVQNALREAGTEEFTVAELTMLPQTYVSLPEDVQGQFDKMIDALEDLD 226
Query: 314 DVDAVY 319
DV VY
Sbjct: 227 DVQQVY 232
>gi|156933558|ref|YP_001437474.1| hypothetical protein ESA_01378 [Cronobacter sakazakii ATCC BAA-894]
gi|389840591|ref|YP_006342675.1| hypothetical protein ES15_1591 [Cronobacter sakazakii ES15]
gi|417789039|ref|ZP_12436713.1| hypothetical protein CSE899_00040 [Cronobacter sakazakii E899]
gi|424800014|ref|ZP_18225556.1| FIG000859: hypothetical protein [Cronobacter sakazakii 696]
gi|429087042|ref|ZP_19149774.1| FIG000859: hypothetical protein [Cronobacter universalis NCTC 9529]
gi|429087045|ref|ZP_19149777.1| FIG000859: hypothetical protein [Cronobacter universalis NCTC 9529]
gi|429105068|ref|ZP_19166937.1| FIG000859: hypothetical protein [Cronobacter malonaticus 681]
gi|429110732|ref|ZP_19172502.1| FIG000859: hypothetical protein [Cronobacter malonaticus 507]
gi|429115975|ref|ZP_19176893.1| FIG000859: hypothetical protein [Cronobacter sakazakii 701]
gi|429122078|ref|ZP_19182679.1| FIG000859: hypothetical protein [Cronobacter sakazakii 680]
gi|449307879|ref|YP_007440235.1| hypothetical protein CSSP291_06745 [Cronobacter sakazakii SP291]
gi|166200382|sp|A7MEB8.1|Y1378_CROS8 RecName: Full=Probable transcriptional regulatory protein ESA_01378
gi|156531812|gb|ABU76638.1| hypothetical protein ESA_01378 [Cronobacter sakazakii ATCC BAA-894]
gi|333956864|gb|EGL74493.1| hypothetical protein CSE899_00040 [Cronobacter sakazakii E899]
gi|387851067|gb|AFJ99164.1| hypothetical protein ES15_1591 [Cronobacter sakazakii ES15]
gi|423235735|emb|CCK07426.1| FIG000859: hypothetical protein [Cronobacter sakazakii 696]
gi|426291791|emb|CCJ93050.1| FIG000859: hypothetical protein [Cronobacter malonaticus 681]
gi|426311889|emb|CCJ98615.1| FIG000859: hypothetical protein [Cronobacter malonaticus 507]
gi|426319104|emb|CCK03006.1| FIG000859: hypothetical protein [Cronobacter sakazakii 701]
gi|426323403|emb|CCK13416.1| FIG000859: hypothetical protein [Cronobacter sakazakii 680]
gi|426506845|emb|CCK14886.1| FIG000859: hypothetical protein [Cronobacter universalis NCTC 9529]
gi|426506848|emb|CCK14889.1| FIG000859: hypothetical protein [Cronobacter universalis NCTC 9529]
gi|449097912|gb|AGE85946.1| hypothetical protein CSSP291_06745 [Cronobacter sakazakii SP291]
Length = 246
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 128/236 (54%), Gaps = 17/236 (7%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
RK AQDAK+ K+++++ +E+++A + GG +P SN L A ++KA ++ +D + R I R
Sbjct: 13 RKAAQDAKRGKIFTKIIRELVTAARLGGGDPGSNPRLRAAIDKALSNNMTRDTLNRAIAR 72
Query: 146 ASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMF 204
++A +E + YE YG GG +++VE L+D R+VA VR CGG + GSV +
Sbjct: 73 GVGGDEDANMETIIYEGYGPGGTAVMVECLSDNRNRTVAEVRHAFSKCGGNLGTDGSVAY 132
Query: 205 KFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNY 264
F + V I F D+D +++ AL+AGAEDV+ T +D A V + +
Sbjct: 133 LFSKKGV--ISFEAGDEDTIMEAALEAGAEDVV--------TYDDGA---IDVYTAWEEM 179
Query: 265 TDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ L AG+ + DN ++P T ++D E LI L + DDV VY
Sbjct: 180 GAVRDALEAAGL--KADNAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVY 233
>gi|367470987|ref|ZP_09470650.1| hypothetical protein PAI11_39910 [Patulibacter sp. I11]
gi|365813949|gb|EHN09184.1| hypothetical protein PAI11_39910 [Patulibacter sp. I11]
Length = 249
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 136/248 (54%), Gaps = 23/248 (9%)
Query: 81 SKIAG---RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKD 137
SK AG +K D+++ KL++++ + + A K+GG +P N LA ++KAK+ +PKD
Sbjct: 5 SKWAGIKHKKAIVDSRRGKLFTKLARHITVAAKEGGGDPVGNAALALAVQKAKDASMPKD 64
Query: 138 IVERNIKRASEKGQEA--FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
++R I + + G +A F +YE YG GGV+++VE LTD R+ + VR + GG
Sbjct: 65 NIQRAIDKGTGAGADAANFEAVMYEGYGPGGVAVLVEALTDNRNRTGSEVRHMFSKHGGS 124
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ +PGSV + F + V+ + D+D L+ +A++AGAED + EDD +
Sbjct: 125 LGEPGSVAYLFDKKGVIVVDGDKHDEDDLM-VAIEAGAED-----IEEDDGS-------F 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELD 313
+V+S + T + L AGI +E +EL+ P +D+E +LI L + D
Sbjct: 172 EVISEPGSLTAVREALDAAGIEYER---AELVYRPQVRTPLDEEQATKLAKLIDTLDDND 228
Query: 314 DVDAVYTD 321
DV V+ +
Sbjct: 229 DVSEVHAN 236
>gi|225848858|ref|YP_002729022.1| hypothetical protein SULAZ_1049 [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225644599|gb|ACN99649.1| conserved hypothetical protein [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 251
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 137/244 (56%), Gaps = 20/244 (8%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I +K DA + K+++++ KE+ A + GG +P +N L +EKAKE+++P + +ER
Sbjct: 10 IKNKKAKMDAIRGKIFTKVIKEITVAARLGGGDPEANPRLRMAIEKAKEVNMPSENIERA 69
Query: 143 IKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IKR + + + E+V YE YG GV+I+VE TD R+ A VR + GG + G
Sbjct: 70 IKRGTGELEGVNYEEVRYEGYGPEGVAIIVEATTDNRNRTTAEVRHIFSKYGGNLGSSGC 129
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
V F F V+N++ + ++++L+ AL+AGAEDVI DD D YY++ ++
Sbjct: 130 VSFLFEDKGVINVEKSKYSEEEILEKALEAGAEDVI-----TDDED------YYEIRTSV 178
Query: 262 DNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDE--AMELNKELIAKLLELDDVDA 317
++ + L + G+ +EL +P TT+++ +E A +L K L+ L + DDV
Sbjct: 179 QDFYKVKENLEKMGVEIAR---AELTKIPTTTVKITNEETATKLMK-LLDALEDNDDVQK 234
Query: 318 VYTD 321
VY +
Sbjct: 235 VYAN 238
>gi|451821274|ref|YP_007457475.1| DNA-binding regulatory protein, YebC/PmpR family [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451787253|gb|AGF58221.1| DNA-binding regulatory protein, YebC/PmpR family [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 246
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 127/238 (53%), Gaps = 13/238 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I +KG DA + K+++++GKE++ AVK GG + +N L V+ KAK ++P D + +
Sbjct: 10 IQAKKGKTDAARGKVFTKLGKEIVVAVKNGGASTDTNAKLRDVIAKAKAANMPNDTIAKA 69
Query: 143 IKRASEKGQEAFIEK-VYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+AS + E VYE YG GV+++VE LTD RS VR GG M G
Sbjct: 70 IKKASGELSSVNYENIVYEGYGPSGVAVIVETLTDNKNRSAGNVRSAFTKGGGNMGTSGC 129
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
V F F+ + I+ D D+++++ +ALDAGAED DE E + V +
Sbjct: 130 VAFMFQEKGELIIEKGDRDEEEMMMLALDAGAEDF--------SADE---EEVFVVTTLP 178
Query: 262 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+++ + L GI F + +++P T ++++ + ++++ L E DDV VY
Sbjct: 179 EDFGTVREALEAEGIEF-LEAAVKMIPDTYTAINEDEAKKFQKMLNLLDEDDDVQEVY 235
>gi|294101864|ref|YP_003553722.1| hypothetical protein [Aminobacterium colombiense DSM 12261]
gi|293616844|gb|ADE56998.1| protein of unknown function DUF28 [Aminobacterium colombiense DSM
12261]
Length = 249
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 130/244 (53%), Gaps = 17/244 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAK+ L+ ++ + +I A K+GG +P+ N L +++AK VP D +
Sbjct: 8 ANIKHRKAAQDAKRGNLFQKLVRAIIVAAKEGGGDPSMNVRLKTAIDRAKAASVPNDNIT 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IKR + + A E++ YE YG GV++++E LTD R+ A VR ++ GG + +
Sbjct: 68 RAIKRGTGEIDGASYEEITYEGYGSNGVALMIEALTDNRNRTAADVRALLARGGGSLGES 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
G V + F R V+ +K + D++ ++ L+AGAED E E Y V +
Sbjct: 128 GCVAWMFERKGVIEVKGENIDEETIMLACLEAGAEDFEE------------IEGGYTVYT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVD--DEAMELNKELIAKLLELDDVDA 317
+ +D+ L AG + SE++P T+ VD + A ++ + L+ L + DDV
Sbjct: 176 SPAALSDVQAALEAAGYEVASAE-SEMVPNNTVAVDTVEHAQKILR-LLENLEDHDDVQN 233
Query: 318 VYTD 321
VY +
Sbjct: 234 VYAN 237
>gi|224372670|ref|YP_002607042.1| hypothetical protein NAMH_0626 [Nautilia profundicola AmH]
gi|254806547|sp|B9L8T4.1|Y626_NAUPA RecName: Full=Probable transcriptional regulatory protein NAMH_0626
gi|223589581|gb|ACM93317.1| conserved hypothetical protein [Nautilia profundicola AmH]
Length = 238
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 133/239 (55%), Gaps = 14/239 (5%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
SK+ K +DAKK+K++++ + +++A ++GG NP +N L +E+AK +P ++
Sbjct: 8 SKVKHIKAKEDAKKSKIFTKHVRAIMTAARQGGGNPDTNAALRLAVERAKADSMPMQNIQ 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I +A+ + +V YE YG GGV+I+VE LTD R+VA +R K GG +
Sbjct: 68 RAIDKATGNLDGVTLSEVSYEGYGPGGVAIMVECLTDNKNRTVAEIRHAFKKAGGSLGTS 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F + +V + +D D D++++ A+++GAED+ E +NE E E + V+
Sbjct: 128 GSVAWMFEKKGIVVVNRSDKD-DEVMETAIESGAEDIKE--LNEVLVIETAPEDFNNVLE 184
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+N I ++ E+ + N S EVDDE E ++LI L ELDDV V
Sbjct: 185 AVNNIDGI--EILESNVQLVATNES--------EVDDETAEKVEKLIEVLEELDDVQNV 233
>gi|315301396|ref|ZP_07872575.1| hypothetical protein NT05LI_0459 [Listeria ivanovii FSL F6-596]
gi|313630234|gb|EFR98188.1| hypothetical protein NT05LI_0459 [Listeria ivanovii FSL F6-596]
Length = 239
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 132/244 (54%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K ++D +++Y++ G E+ A K G P+P SN L V+E+AK +VP
Sbjct: 1 MGRKWANIKEKKASKDKTNSRIYAKFGIEIYVAAKSGDPDPHSNQKLRFVIERAKTYNVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K I++R I++A G E + E YE +G G I+V+ LT+ + R+ + VR GG
Sbjct: 61 KHIIDRAIEKAKGTGDETYSELRYEGFGPNGSMIIVDALTNNVNRTASDVRAAYSKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
M GSV + F + ++ DA D+LL++ ++A DV D +DED Y
Sbjct: 121 MGVSGSVAYMFDNTAIFGVEGKDA--DELLELLMEADI-DV------RDISDEDGQAIVY 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+ +++ + L+ AG+ T E++P I++ E +E ++LI L +L+DV
Sbjct: 172 ---AEPEDFHKVQEGLKAAGMEEFTVAEIEMIPQNDIQLAGEDLEKFEKLIDALEDLEDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QKVY 232
>gi|160898960|ref|YP_001564542.1| hypothetical protein Daci_3521 [Delftia acidovorans SPH-1]
gi|333914917|ref|YP_004488649.1| hypothetical protein DelCs14_3298 [Delftia sp. Cs1-4]
gi|160364544|gb|ABX36157.1| protein of unknown function DUF28 [Delftia acidovorans SPH-1]
gi|333745117|gb|AEF90294.1| UPF0082 protein yeeN [Delftia sp. Cs1-4]
Length = 239
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 138/242 (57%), Gaps = 18/242 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKG QD K+ K+++R+ +E++ A + GG + ++N L +EKAK ++P D ++
Sbjct: 8 ANIQHRKGRQDEKRGKVWTRIIREIMVAARTGGGDLSANPRLRLAVEKAKAANMPADNIK 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
RNI +A+ + E++ YE YG GG +I+V+ +TD R+VA VR GG M
Sbjct: 68 RNIDKATGNLEGVTYEEIRYEGYGIGGAAIIVDTMTDNRVRTVADVRHAFSKYGGNMGTE 127
Query: 200 GSVMFKFRRARVVNIKFT-DADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
GSV F+F+ V + F +D+DQ++++AL+AGAEDVI TD++ A +V+
Sbjct: 128 GSVSFQFK--HVGQLIFAPGSDEDQIMEVALEAGAEDVI--------TDDEGA---IEVL 174
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELLPITTIEVD-DEAMELNKELIAKLLELDDVDA 317
+ + + L+ G+ E + + P TI + D+A + K L+ + +LDDV
Sbjct: 175 TAPAEFETVRDALQAKGLTPEVAEVT-MRPENTIALQGDDAARMQK-LLDMIEDLDDVQD 232
Query: 318 VY 319
VY
Sbjct: 233 VY 234
>gi|150019034|ref|YP_001311288.1| hypothetical protein Cbei_4222 [Clostridium beijerinckii NCIMB
8052]
gi|189040286|sp|A6M152.1|Y4222_CLOB8 RecName: Full=Probable transcriptional regulatory protein Cbei_4222
gi|149905499|gb|ABR36332.1| protein of unknown function DUF28 [Clostridium beijerinckii NCIMB
8052]
Length = 245
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 111/215 (51%), Gaps = 14/215 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I +KG DAK+ K+++++GKE++ AVK GG N N L V+ KAK ++P D + +
Sbjct: 10 IQAKKGKTDAKRGKIFTKIGKEIVMAVKNGGANQDINAKLRDVVAKAKAANMPNDTISKA 69
Query: 143 IKRASEKGQEAFIEK-VYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+AS + E VYE YG GV+++VE LTD RS VR GG M G
Sbjct: 70 IKKASGELSSVNYENIVYEGYGPSGVAVIVETLTDNKNRSAGNVRSAFTKGGGNMGTSGC 129
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
V F F+ + I+ D D+D+L+ IALDAGAED E + V +
Sbjct: 130 VSFMFQEKGEIVIEKEDKDEDELMMIALDAGAEDFASE------------EEVFVVTTAP 177
Query: 262 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDD 296
+ + + L GI F + +++P T +D+
Sbjct: 178 EEFGTVREALEAQGIEF-LEASVKMIPDTYTAIDE 211
>gi|334127864|ref|ZP_08501766.1| glucose-1-phosphate adenylyltransferase [Centipeda periodontii DSM
2778]
gi|333388585|gb|EGK59759.1| glucose-1-phosphate adenylyltransferase [Centipeda periodontii DSM
2778]
Length = 242
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/249 (35%), Positives = 137/249 (55%), Gaps = 27/249 (10%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +KGA DA + K+ +++G+E+ AV+ GG +PT N L L KAK ++PKD
Sbjct: 8 ANIKRKKGANDAIRGKITTKIGREITIAVRMGGGDPTGNMRLKLALSKAKANNIPKD--- 64
Query: 141 RNIKRASEKGQEA-----FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
NI RA +KG A + E +YE YG GG ++++++LTD R+ A VR + GG
Sbjct: 65 -NINRAIQKGLGATEGSNYEELLYEGYGPGGTAVMLDILTDNRNRTAADVRHLFSKYGGN 123
Query: 196 MADPGSV--MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAER 253
+ G V MFK + +V + D D+D LL+I L+AGAED+ EDD
Sbjct: 124 LGQDGCVSWMFKKKAVFIVEREAFD-DEDALLEIVLEAGAEDMRA----EDDV------- 171
Query: 254 YYKVVSTSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLEL 312
+++++ D + I L E GI ET + ++P TT+ + D+ E + LI L +
Sbjct: 172 -FEIIAEPDAFDAIEAILGEKGI--ETASAEVTMVPDTTVHLADKDAEKMQTLIDALEDN 228
Query: 313 DDVDAVYTD 321
DDV VY++
Sbjct: 229 DDVQNVYSN 237
>gi|358464037|ref|ZP_09174006.1| DNA-binding regulatory protein, YebC/PmpR family [Streptococcus sp.
oral taxon 058 str. F0407]
gi|357067457|gb|EHI77573.1| DNA-binding regulatory protein, YebC/PmpR family [Streptococcus sp.
oral taxon 058 str. F0407]
Length = 238
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 126/249 (50%), Gaps = 18/249 (7%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ A KKG P+P SNT L V+++AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGANSKVYAKFGVEIYVAAKKGDPDPESNTALKFVIDRAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A E F E YE +G G ++V+ LT + R+ A VR GG
Sbjct: 61 KHVIDKAIDKAKGNTDETFTEGRYEGFGPNGSMLIVDTLTSNVNRTAANVRAAFGKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
M GSV + F V I F D D + ++ L+A D D D E
Sbjct: 121 MGASGSVSYLFDNKGV--IVFAGEDADAIFELLLEA-------------DVDVDDVEAED 165
Query: 256 KVVSTSDNYTDI---TTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLEL 312
V+ TD+ LRE+GI E++P + +E+ + +E ++L + L +
Sbjct: 166 GTVTVYTAPTDLHKAIVALRESGIQEFQVTELEMIPQSEVELSGDDLETFEKLYSVLEDD 225
Query: 313 DDVDAVYTD 321
+DV +YT+
Sbjct: 226 EDVQKIYTN 234
>gi|334364220|ref|ZP_08513212.1| DNA-binding regulatory protein, YebC/PmpR family [Alistipes sp.
HGB5]
gi|390947208|ref|YP_006410968.1| YebC/PmpR family DNA-binding regulatory protein [Alistipes
finegoldii DSM 17242]
gi|313159415|gb|EFR58778.1| DNA-binding regulatory protein, YebC/PmpR family [Alistipes sp.
HGB5]
gi|390423777|gb|AFL78283.1| DNA-binding regulatory protein, YebC/PmpR family [Alistipes
finegoldii DSM 17242]
Length = 241
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/245 (35%), Positives = 131/245 (53%), Gaps = 14/245 (5%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR RK + A+ ++++GKE+ AVK GP+P+ NT L +++ AK ++P
Sbjct: 1 MGRAFEYRKARKMKRWGHMARTFTKLGKEIEIAVKAAGPDPSGNTRLRILMQNAKAENMP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K+ VER IKRA+EK + E +YE YG G++ +VE TD R+VA VR CGG
Sbjct: 61 KENVERAIKRATEKDAADYKEVIYEGYGSHGIAFLVETATDNTNRTVANVRMYFNKCGGT 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ + GSV F F V KF A+ + ++ L ++I+ V+E +ED
Sbjct: 121 LGNSGSVAFMFDHKCV--FKFRPAEGVDMEELEL-----EMIDLGVDEFYPEEDGV---- 169
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNG-SELLPITTIEVDDEAMELNKELIAKLLELDD 314
V + +++ I L + G +E +G S LP T E+D E E ++L+ KL E DD
Sbjct: 170 TVYAPYESFGAIQKWLDDKG--YEIVSGESVYLPTDTKELDAEGRESIEKLVEKLEEDDD 227
Query: 315 VDAVY 319
V VY
Sbjct: 228 VTNVY 232
>gi|238023201|ref|ZP_04603627.1| hypothetical protein GCWU000324_03128 [Kingella oralis ATCC 51147]
gi|237865584|gb|EEP66724.1| hypothetical protein GCWU000324_03128 [Kingella oralis ATCC 51147]
Length = 241
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 130/246 (52%), Gaps = 15/246 (6%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +K DA++ K+++++ KE+ A K+GG +P SN L ++KA + ++PKD
Sbjct: 6 KWANIQHKKARVDAQRGKIFTKLIKEITVAAKQGGGDPASNPRLRLAMDKAWDANMPKDN 65
Query: 139 VERNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMA 197
V+R I + + + ++E YE YG GG +++V+ +TD TR+VA VR GG +
Sbjct: 66 VQRAIDKGTGNLEGVDYVELRYEGYGIGGAALMVDCMTDNKTRTVADVRHAFTKNGGNLG 125
Query: 198 DPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
G V F F + F + D+D L++ AL+AGAEDVI DD E +V
Sbjct: 126 TDGCVAFNFVHQGY--LVFANVDEDALMEAALEAGAEDVI-----VDD------EGIIEV 172
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 317
++ +++ I L +AG E D + T E+ E ++LI L LDDV
Sbjct: 173 ITAPNDWAAIKAALEQAGFKAE-DGDVTMRAQNTTELSGADAEKMQKLIDALESLDDVQN 231
Query: 318 VYTDQI 323
VYT +
Sbjct: 232 VYTSAV 237
>gi|110823373|gb|ABG98657.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length = 305
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 134/267 (50%), Gaps = 15/267 (5%)
Query: 57 EVKHCNFQVRTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNP 116
E H Q + R + + + +K DAK+ K ++++ K + A + GG +P
Sbjct: 39 ETAHSACQRQQERGLNRMSGHSKWATTKHKKAVIDAKRGKAFAKLIKNIEVAARTGGGDP 98
Query: 117 TSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGVSIVVEVL 174
N L ++KAK+ VP D +ER KR + E G + +YE YG GV++++E L
Sbjct: 99 AGNPTLYDAIQKAKKTSVPNDNIERARKRGAGEEAGGADWQTIMYEGYGPNGVAVLIECL 158
Query: 175 TDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAE 234
TD R+ VR + GG MADPGSV + F R VV ++ D +D +L LDAGAE
Sbjct: 159 TDNRNRAAGEVRTAMTRNGGNMADPGSVSYLFTRKGVVTLEKGDQSEDDVLMAVLDAGAE 218
Query: 235 DVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEV 294
+V + DT +++VS + + + L+EAGI +++ ++ + V
Sbjct: 219 EVTDL----GDT--------FEIVSEPTDLVAVRSALQEAGIDYDSAE-ADFRASVEVPV 265
Query: 295 DDEAMELNKELIAKLLELDDVDAVYTD 321
D + +L+ L E DDV VYT+
Sbjct: 266 DADGARKVFKLVDALEESDDVQNVYTN 292
>gi|417931868|ref|ZP_12575233.1| DNA-binding regulatory protein, YebC/PmpR family [Propionibacterium
acnes SK182B-JCVI]
gi|340775811|gb|EGR97864.1| DNA-binding regulatory protein, YebC/PmpR family [Propionibacterium
acnes SK182B-JCVI]
Length = 264
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/251 (35%), Positives = 138/251 (54%), Gaps = 29/251 (11%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++R+ K + A + GG +PT N L ++KAK+ VP D + R +KR
Sbjct: 13 KKAAIDAKRGKLFARLIKNIEVAARLGGGDPTGNPTLYDAIQKAKKSSVPNDNITRAVKR 72
Query: 146 ASEKGQEA--FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S +G +A + +YE YG GV+I++E LTD R+V+ VR V GG MAD GSV
Sbjct: 73 GSGEGADAVNYETIMYEAYGPAGVAILIECLTDNRNRAVSDVRVAVTRNGGTMADGGSVQ 132
Query: 204 FKFRRARVVNIKFT------------DADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRA 251
F+R VV++ T + D+DQL++ +DA ED++ D
Sbjct: 133 RLFQRKGVVSVSKTYEVEEGRKTETREVDEDQLMEATIDAEPEDIV-----------DEG 181
Query: 252 ERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVD-DEAMELNKELIAKLL 310
E ++++S + D+ +++AGI +++ S P T VD D A +L K L A L
Sbjct: 182 E-VFEIISDPNAVVDVRKAVQDAGIDYDSAEVS-FKPDFTQAVDLDGARKLYKILDA-LE 238
Query: 311 ELDDVDAVYTD 321
+LDDV V+++
Sbjct: 239 DLDDVQNVFSN 249
>gi|169633711|ref|YP_001707447.1| hypothetical protein ABSDF2152 [Acinetobacter baumannii SDF]
gi|169796215|ref|YP_001714008.1| hypothetical protein ABAYE2155 [Acinetobacter baumannii AYE]
gi|184157856|ref|YP_001846195.1| hypothetical protein ACICU_01536 [Acinetobacter baumannii ACICU]
gi|213157051|ref|YP_002319096.1| hypothetical protein AB57_1731 [Acinetobacter baumannii AB0057]
gi|215483670|ref|YP_002325891.1| hypothetical protein ABBFA_001989 [Acinetobacter baumannii
AB307-0294]
gi|239502267|ref|ZP_04661577.1| hypothetical protein AbauAB_08130 [Acinetobacter baumannii AB900]
gi|260555277|ref|ZP_05827498.1| UPF0082 protein [Acinetobacter baumannii ATCC 19606 = CIP 70.34]
gi|301346643|ref|ZP_07227384.1| hypothetical protein AbauAB0_10366 [Acinetobacter baumannii AB056]
gi|301512569|ref|ZP_07237806.1| hypothetical protein AbauAB05_13327 [Acinetobacter baumannii AB058]
gi|301594641|ref|ZP_07239649.1| hypothetical protein AbauAB059_02490 [Acinetobacter baumannii
AB059]
gi|332855487|ref|ZP_08435907.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii 6013150]
gi|332866616|ref|ZP_08437103.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii 6013113]
gi|332872497|ref|ZP_08440467.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii 6014059]
gi|384131951|ref|YP_005514563.1| hypothetical protein [Acinetobacter baumannii 1656-2]
gi|384142943|ref|YP_005525653.1| hypothetical protein [Acinetobacter baumannii MDR-ZJ06]
gi|385236763|ref|YP_005798102.1| hypothetical protein ABTW07_1212 [Acinetobacter baumannii
TCDC-AB0715]
gi|385237274|ref|YP_005798613.1| hypothetical protein ABTW07_1724 [Acinetobacter baumannii
TCDC-AB0715]
gi|387124186|ref|YP_006290068.1| YebC/PmpR family DNA-binding regulatory protein [Acinetobacter
baumannii MDR-TJ]
gi|403676805|ref|ZP_10938686.1| hypothetical protein ANCT1_18745 [Acinetobacter sp. NCTC 10304]
gi|407932567|ref|YP_006848210.1| YebC/PmpR family DNA-binding regulatory protein [Acinetobacter
baumannii TYTH-1]
gi|416145905|ref|ZP_11600755.1| hypothetical protein AB210_0766 [Acinetobacter baumannii AB210]
gi|417543871|ref|ZP_12194957.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC032]
gi|417547611|ref|ZP_12198693.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-18]
gi|417553299|ref|ZP_12204369.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-81]
gi|417560855|ref|ZP_12211734.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC137]
gi|417565262|ref|ZP_12216136.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC143]
gi|417568224|ref|ZP_12219087.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC189]
gi|417572546|ref|ZP_12223400.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Canada BC-5]
gi|417578834|ref|ZP_12229667.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-17]
gi|417869776|ref|ZP_12514756.1| hypothetical protein ABNIH1_06420 [Acinetobacter baumannii ABNIH1]
gi|417873238|ref|ZP_12518114.1| hypothetical protein ABNIH2_04440 [Acinetobacter baumannii ABNIH2]
gi|417878620|ref|ZP_12523229.1| hypothetical protein ABNIH3_11253 [Acinetobacter baumannii ABNIH3]
gi|417883264|ref|ZP_12527518.1| hypothetical protein ABNIH4_12543 [Acinetobacter baumannii ABNIH4]
gi|421197871|ref|ZP_15655040.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC109]
gi|421204552|ref|ZP_15661673.1| dna-binding regulatory family [Acinetobacter baumannii AC12]
gi|421456106|ref|ZP_15905449.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii IS-123]
gi|421536414|ref|ZP_15982660.1| transcriptional regulatory protein [Acinetobacter baumannii AC30]
gi|421622046|ref|ZP_16062956.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC074]
gi|421624767|ref|ZP_16065631.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC098]
gi|421629548|ref|ZP_16070280.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC180]
gi|421632780|ref|ZP_16073425.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-13]
gi|421645011|ref|ZP_16085485.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii IS-235]
gi|421648607|ref|ZP_16089010.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii IS-251]
gi|421652901|ref|ZP_16093249.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC0162]
gi|421653637|ref|ZP_16093970.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-72]
gi|421657141|ref|ZP_16097416.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-83]
gi|421661953|ref|ZP_16102123.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC110]
gi|421669903|ref|ZP_16109914.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC099]
gi|421676611|ref|ZP_16116518.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC065]
gi|421678618|ref|ZP_16118502.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC111]
gi|421687549|ref|ZP_16127270.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii IS-143]
gi|421691100|ref|ZP_16130764.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii IS-116]
gi|421696971|ref|ZP_16136550.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii WC-692]
gi|421699766|ref|ZP_16139290.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii IS-58]
gi|421703382|ref|ZP_16142845.1| hypothetical protein B825_08914 [Acinetobacter baumannii ZWS1122]
gi|421707105|ref|ZP_16146504.1| hypothetical protein B837_08480 [Acinetobacter baumannii ZWS1219]
gi|421791126|ref|ZP_16227310.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-2]
gi|421798438|ref|ZP_16234460.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-21]
gi|421798619|ref|ZP_16234636.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Canada BC1]
gi|421804890|ref|ZP_16240786.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii WC-A-694]
gi|421809091|ref|ZP_16244931.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC035]
gi|424052617|ref|ZP_17790149.1| UPF0082 protein [Acinetobacter baumannii Ab11111]
gi|424060153|ref|ZP_17797644.1| UPF0082 protein [Acinetobacter baumannii Ab33333]
gi|425748810|ref|ZP_18866792.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii WC-348]
gi|425751780|ref|ZP_18869722.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-113]
gi|445406606|ref|ZP_21431883.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-57]
gi|445458714|ref|ZP_21447254.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC047]
gi|445469619|ref|ZP_21451276.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC338]
gi|445475539|ref|ZP_21453429.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-78]
gi|445488780|ref|ZP_21458389.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii AA-014]
gi|226701115|sp|B7H3U3.1|Y1989_ACIB3 RecName: Full=Probable transcriptional regulatory protein
ABBFA_001989
gi|226701194|sp|B0VR58.1|Y2152_ACIBS RecName: Full=Probable transcriptional regulatory protein ABSDF2152
gi|226701197|sp|B0VC84.1|Y2155_ACIBY RecName: Full=Probable transcriptional regulatory protein ABAYE2155
gi|226734691|sp|B2HYW1.1|Y1536_ACIBC RecName: Full=Probable transcriptional regulatory protein
ACICU_01536
gi|226736434|sp|B7I4G5.1|Y1731_ACIB5 RecName: Full=Probable transcriptional regulatory protein AB57_1731
gi|169149142|emb|CAM87021.1| conserved hypothetical protein [Acinetobacter baumannii AYE]
gi|169152503|emb|CAP01477.1| conserved hypothetical protein [Acinetobacter baumannii]
gi|183209450|gb|ACC56848.1| uncharacterized conserved protein [Acinetobacter baumannii ACICU]
gi|213056211|gb|ACJ41113.1| conserved hypothetical protein [Acinetobacter baumannii AB0057]
gi|213988098|gb|ACJ58397.1| conserved hypothetical protein [Acinetobacter baumannii AB307-0294]
gi|260411819|gb|EEX05116.1| UPF0082 protein [Acinetobacter baumannii ATCC 19606 = CIP 70.34]
gi|322508171|gb|ADX03625.1| Hypothetical protein ABK1_1991 [Acinetobacter baumannii 1656-2]
gi|323517260|gb|ADX91641.1| hypothetical protein ABTW07_1212 [Acinetobacter baumannii
TCDC-AB0715]
gi|323517772|gb|ADX92153.1| hypothetical protein ABTW07_1724 [Acinetobacter baumannii
TCDC-AB0715]
gi|332727461|gb|EGJ58891.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii 6013150]
gi|332734490|gb|EGJ65603.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii 6013113]
gi|332739303|gb|EGJ70160.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii 6014059]
gi|333366464|gb|EGK48478.1| hypothetical protein AB210_0766 [Acinetobacter baumannii AB210]
gi|342229648|gb|EGT94507.1| hypothetical protein ABNIH1_06420 [Acinetobacter baumannii ABNIH1]
gi|342231945|gb|EGT96737.1| hypothetical protein ABNIH2_04440 [Acinetobacter baumannii ABNIH2]
gi|342232264|gb|EGT97044.1| hypothetical protein ABNIH3_11253 [Acinetobacter baumannii ABNIH3]
gi|342236161|gb|EGU00703.1| hypothetical protein ABNIH4_12543 [Acinetobacter baumannii ABNIH4]
gi|347593436|gb|AEP06157.1| conserve hypothetical protein [Acinetobacter baumannii MDR-ZJ06]
gi|385878678|gb|AFI95773.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii MDR-TJ]
gi|395523437|gb|EJG11526.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC137]
gi|395554519|gb|EJG20521.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC189]
gi|395557018|gb|EJG23019.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC143]
gi|395566377|gb|EJG28020.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC109]
gi|395567972|gb|EJG28646.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-17]
gi|398325955|gb|EJN42112.1| dna-binding regulatory family [Acinetobacter baumannii AC12]
gi|400208114|gb|EJO39084.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Canada BC-5]
gi|400211204|gb|EJO42167.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii IS-123]
gi|400381759|gb|EJP40437.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC032]
gi|400389360|gb|EJP52431.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-18]
gi|400393558|gb|EJP60604.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-81]
gi|404560704|gb|EKA65946.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii WC-692]
gi|404563251|gb|EKA68461.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii IS-116]
gi|404564349|gb|EKA69529.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii IS-143]
gi|404571467|gb|EKA76527.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii IS-58]
gi|404668105|gb|EKB36014.1| UPF0082 protein [Acinetobacter baumannii Ab33333]
gi|404672067|gb|EKB39909.1| UPF0082 protein [Acinetobacter baumannii Ab11111]
gi|407192176|gb|EKE63359.1| hypothetical protein B825_08914 [Acinetobacter baumannii ZWS1122]
gi|407192546|gb|EKE63723.1| hypothetical protein B837_08480 [Acinetobacter baumannii ZWS1219]
gi|407901148|gb|AFU37979.1| YebC/PmpR family DNA-binding regulatory protein [Acinetobacter
baumannii TYTH-1]
gi|408504025|gb|EKK05777.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii IS-235]
gi|408504318|gb|EKK06069.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC0162]
gi|408512990|gb|EKK14628.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-72]
gi|408515441|gb|EKK17029.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii IS-251]
gi|408696560|gb|EKL42093.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC074]
gi|408700461|gb|EKL45912.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC098]
gi|408701534|gb|EKL46963.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC180]
gi|408707888|gb|EKL53167.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-13]
gi|408714283|gb|EKL59435.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-83]
gi|408715445|gb|EKL60573.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC110]
gi|409985665|gb|EKO41872.1| transcriptional regulatory protein [Acinetobacter baumannii AC30]
gi|410379678|gb|EKP32281.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC065]
gi|410386865|gb|EKP39327.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC099]
gi|410392181|gb|EKP44543.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC111]
gi|410394302|gb|EKP46638.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-21]
gi|410403622|gb|EKP55705.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-2]
gi|410410275|gb|EKP62189.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii WC-A-694]
gi|410412610|gb|EKP64467.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Canada BC1]
gi|410414875|gb|EKP66667.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC035]
gi|425489791|gb|EKU56092.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii WC-348]
gi|425499787|gb|EKU65818.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-113]
gi|444767616|gb|ELW91863.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii AA-014]
gi|444774281|gb|ELW98369.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC338]
gi|444775123|gb|ELW99193.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC047]
gi|444778878|gb|ELX02878.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-78]
gi|444781253|gb|ELX05172.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-57]
gi|452953459|gb|EME58878.1| hypothetical protein G347_04673 [Acinetobacter baumannii MSP4-16]
Length = 249
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 139/246 (56%), Gaps = 22/246 (8%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK QDA + K++++ +E+++A K GG +P SN L AV+EKA +++ +D +
Sbjct: 8 ANIKHRKAKQDASRGKVFTKYIREIVTAAKLGGADPASNPRLRAVVEKALSVNMTRDTIN 67
Query: 141 RNIKRA-SEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I+R + + E YE YG GGV+++VE +TD + R+V VR G +
Sbjct: 68 RAIQRGVGGEDNDDLKEVTYEGYGVGGVAVLVETMTDNLNRTVPDVRHCFSKTNGNLGTA 127
Query: 200 GSVMFKFRRARVVNIKFTDAD-KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
GSV + F + I F D +D+++D+AL+AGAED+ V+ED+ V+
Sbjct: 128 GSVAYLFTKRG--EITFDDVSLEDKIMDVALEAGAEDI---EVSEDE---------ILVI 173
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELL-PITTIEVD--DEAMELNKELIAKLLELDDV 315
++ + + ++ L AG+ ++DN ++ P T E+ D+A ++ K LI L +LDDV
Sbjct: 174 TSPETFGEVQDALAAAGL--KSDNAEVVMSPSTKAEITDIDQAKQVMK-LIDMLEDLDDV 230
Query: 316 DAVYTD 321
VYT+
Sbjct: 231 QNVYTN 236
>gi|425734802|ref|ZP_18853119.1| hypothetical protein C272_06695 [Brevibacterium casei S18]
gi|425480738|gb|EKU47902.1| hypothetical protein C272_06695 [Brevibacterium casei S18]
Length = 250
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 128/238 (53%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++++ K + A + GGP+P N L ++KAK+ VP D + R +KR
Sbjct: 13 KKAAIDAKRGKLFAKLIKNIEVAARNGGPDPDGNPTLFDAIQKAKKNSVPADNINRAVKR 72
Query: 146 ASEKGQEA--FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
EA + +YE Y GGV++++E LTD R+ + VR V GG MADPGSV
Sbjct: 73 GGGLDGEAVNYETIMYEGYAAGGVALLIECLTDNRNRAASEVRVAVTRNGGSMADPGSVS 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R V+ + D+D +++ L+AGAE+V D E ++V+S + +
Sbjct: 133 YNFNRKGVIVVPAEGTDEDAIVEATLEAGAEEV-----------NDEGET-FEVISEATD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ + L +AGI +++ S +P + +D +LI L + D+V VY++
Sbjct: 181 LVAVRSALVDAGIDYDSAEAS-FVPGLKVSLDAATAAKVFKLIDALEDSDEVQNVYSN 237
>gi|456352813|dbj|BAM87258.1| hypothetical protein S58_12480 [Agromonas oligotrophica S58]
Length = 248
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 128/246 (52%), Gaps = 27/246 (10%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA K+KL+ ++ +E+ + K G P+P N L A + A+ ++PKD +ER
Sbjct: 10 IMHRKGRQDAMKSKLFGKLAREITVSAKLGTPDPAMNPRLRAAVVAARAENMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A + + E YE YG GGV+++VE LTD R+ + +R GG + + GSV
Sbjct: 70 IKKALGGEGDNYDEIRYEGYGPGGVAVIVEALTDNRNRAASDIRSYFTKSGGNLGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R ++ + A D +LD A++AGA+DVI E ++V ++ +
Sbjct: 130 SFMFDRVGIIEFDRSVASDDAVLDAAIEAGADDVIS------------GEGGHEVYASPE 177
Query: 263 NYTDITTKL-------REAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+ ++ L R+A + ++ P T+ VDDE E +L+ L E DDV
Sbjct: 178 SLREVAKNLEAKFGEPRKAALTWK--------PQNTVAVDDETAEKLLKLMDLLNEHDDV 229
Query: 316 DAVYTD 321
VY +
Sbjct: 230 QNVYAN 235
>gi|322374969|ref|ZP_08049483.1| putative cytoplasmic protein [Streptococcus sp. C300]
gi|321280469|gb|EFX57508.1| putative cytoplasmic protein [Streptococcus sp. C300]
Length = 238
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 126/249 (50%), Gaps = 18/249 (7%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ A KKG P+P SNT L V+++AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGANSKVYAKFGVEIYVAAKKGDPDPESNTALKFVIDRAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A E F E YE +G G ++V+ LT + R+ A VR GG
Sbjct: 61 KHVIDKAIDKAKGNTDETFTEGRYEGFGPNGSMLIVDTLTSNVNRTAANVRAAFGKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
M GSV + F V I F D D + ++ L+A D D D E
Sbjct: 121 MGASGSVSYLFDNKGV--IVFAGEDADAIFELLLEA-------------DVDVDDVEAEE 165
Query: 256 KVVSTSDNYTDI---TTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLEL 312
++ TD+ LRE+GI E++P + +E+ + +E ++L + L +
Sbjct: 166 GTITVYTAPTDLHKAIVALRESGIEEFQVTELEMIPQSEVELSGDDLETFEKLYSVLEDD 225
Query: 313 DDVDAVYTD 321
+DV +YT+
Sbjct: 226 EDVQKIYTN 234
>gi|256370124|ref|YP_003107635.1| hypothetical protein BMI_I1736 [Brucella microti CCM 4915]
gi|256000287|gb|ACU48686.1| hypothetical protein BMI_I1736 [Brucella microti CCM 4915]
Length = 248
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 125/239 (52%), Gaps = 13/239 (5%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++S++ +E+ A K+G P+P N L ++ AK +PKD +ER
Sbjct: 10 IMHRKGRQDAVRSKMFSKLAREITVAAKQGLPDPAMNPRLRLAIQNAKAQSMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+A+ E + E YE G GGVS++VE LTD R+ + VR GG + + GSV
Sbjct: 70 IKKAAGNDGENYDEVRYEGRGPGGVSVIVEALTDNRNRTASNVRAAFTKSGGSLGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R + K D D +++ A++AGAEDV E + ++ +
Sbjct: 130 SFMFDRVGEIVYKPEAGDADNVMEAAIEAGAEDV------------QSGEDGHVILCAFE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ +++ L EA + + P T E+D+E +L++ L + DDV VYT+
Sbjct: 178 DIGEVSKAL-EAALGEAESIKTIWKPQTNTELDEEKARSVLKLLSVLEDDDDVQNVYTN 235
>gi|255536189|ref|YP_003096560.1| hypothetical protein FIC_02056 [Flavobacteriaceae bacterium
3519-10]
gi|255342385|gb|ACU08498.1| hypothetical protein FIC_02056 [Flavobacteriaceae bacterium
3519-10]
Length = 260
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 127/246 (51%), Gaps = 15/246 (6%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR K A+ K AK +S++GK++ AVK GGP+P +N L ++ AK ++P
Sbjct: 15 MGRAFEYRKASKMARWDKMAKTFSKIGKDIALAVKAGGPDPEANPALRRCIQNAKGANMP 74
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
KD VER IK+AS E + E YE YG GGV+ +E T+ TR+VA VR + G
Sbjct: 75 KDNVERAIKKASGAEAENYEEVTYEGYGQGGVAFFIECTTNNTTRTVANVRAIFNKFDGN 134
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ G + F F R + I + L+ +A D ++I+ + D+DE+
Sbjct: 135 LGKNGELAFVFDRKGIFTIDRS------LIKMAWDDFEMEMIDGGAEDIDSDEEEV---- 184
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELD 313
+ S +++ + KL E GI + +EL +P T EV +E + N +++ + E D
Sbjct: 185 MITSAYEDFGAVAHKLDELGIEVKA---AELQRIPNNTKEVSEEQFKANMKMLDRFEEDD 241
Query: 314 DVDAVY 319
DV VY
Sbjct: 242 DVQNVY 247
>gi|398309744|ref|ZP_10513218.1| hypothetical protein BmojR_09566 [Bacillus mojavensis RO-H-1]
Length = 239
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 128/244 (52%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K ++DA +++Y++ G+E+ A K+G P+P SN L VLE+AK VP
Sbjct: 1 MGRKWNNIKEKKASKDANTSRVYAKFGREIYVAAKQGEPDPESNQALKVVLERAKTYSVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K+I+ER I++A +E + E YE +G G I+V+ LT+ + R+ VR GG
Sbjct: 61 KNIIERAIEKAKGGAEENYDELRYEGFGPNGSMIIVDALTNNVNRTAPEVRAAFGKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
M GSV + F V+ ++ AD+ + + D D++E EDD+
Sbjct: 121 MGVSGSVAYMFDATAVIGVEGKTADEALEILMEADVDVRDILE----EDDS--------V 168
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
V + D + + + AG+ T +L + + + ++A E ++LI L +L+DV
Sbjct: 169 IVYAEPDQFHAVQEAFKNAGVEEFTVAELTMLAQSEVTLPEDAKEQFEKLIDALEDLEDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QQVY 232
>gi|376259562|ref|YP_005146282.1| YebC/PmpR family DNA-binding regulatory protein [Clostridium sp.
BNL1100]
gi|373943556|gb|AEY64477.1| DNA-binding regulatory protein, YebC/PmpR family [Clostridium sp.
BNL1100]
Length = 246
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 133/242 (54%), Gaps = 16/242 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +KGA DA +AK+++++G+E+ AV+ GG +P +N+ L ++ K K ++P D ++
Sbjct: 8 ANIKRQKGAADAVRAKIFTKLGREIQIAVRMGGADPNANSKLKDIIAKCKANNMPNDNIQ 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R+IK+AS + + E++ YE YG GGV+++ E TD R+ +R GG +
Sbjct: 68 RSIKKASGEADGSNYEEITYEGYGPGGVAVICECTTDNRNRTAGDLRHYFDKFGGNLGQS 127
Query: 200 GSVMFKFRRARVVNIKFTD-ADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
G V F F + V+ I+ D +++ L+ ALDAGAED D + Y++V
Sbjct: 128 GCVSFMFNKKGVIVIEKDDKVNEETLMMEALDAGAEDF------------DSDDNCYEIV 175
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDD-EAMELNKELIAKLLELDDVDA 317
+ +++ + L G F + ++P TT ++ + E ++ +LI L +LDDV
Sbjct: 176 TDPADFSAVREALEAKGYEF-IEAEVSMIPTTTTKLTEPEQIKFMDKLIEALEDLDDVSN 234
Query: 318 VY 319
VY
Sbjct: 235 VY 236
>gi|300941140|ref|ZP_07155651.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS 21-1]
gi|331647589|ref|ZP_08348681.1| putative cytoplasmic protein [Escherichia coli M605]
gi|387829895|ref|YP_003349832.1| hypothetical protein ECSF_1842 [Escherichia coli SE15]
gi|417662576|ref|ZP_12312157.1| hypothetical protein YeeN [Escherichia coli AA86]
gi|432500445|ref|ZP_19742203.1| hypothetical protein A177_02540 [Escherichia coli KTE216]
gi|432680567|ref|ZP_19915944.1| hypothetical protein A1YW_02316 [Escherichia coli KTE143]
gi|432694766|ref|ZP_19929971.1| hypothetical protein A31I_02241 [Escherichia coli KTE162]
gi|432919404|ref|ZP_20123535.1| hypothetical protein A133_02452 [Escherichia coli KTE173]
gi|432927211|ref|ZP_20128751.1| hypothetical protein A135_02801 [Escherichia coli KTE175]
gi|432981388|ref|ZP_20170164.1| hypothetical protein A15W_02517 [Escherichia coli KTE211]
gi|433096805|ref|ZP_20283000.1| hypothetical protein WK3_02010 [Escherichia coli KTE139]
gi|433106218|ref|ZP_20292205.1| hypothetical protein WK7_02086 [Escherichia coli KTE148]
gi|281179052|dbj|BAI55382.1| conserved hypothetical protein [Escherichia coli SE15]
gi|300454119|gb|EFK17612.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS 21-1]
gi|330911794|gb|EGH40304.1| hypothetical protein YeeN [Escherichia coli AA86]
gi|331043313|gb|EGI15451.1| putative cytoplasmic protein [Escherichia coli M605]
gi|431028765|gb|ELD41804.1| hypothetical protein A177_02540 [Escherichia coli KTE216]
gi|431221497|gb|ELF18818.1| hypothetical protein A1YW_02316 [Escherichia coli KTE143]
gi|431234293|gb|ELF29695.1| hypothetical protein A31I_02241 [Escherichia coli KTE162]
gi|431444718|gb|ELH25740.1| hypothetical protein A133_02452 [Escherichia coli KTE173]
gi|431445438|gb|ELH26365.1| hypothetical protein A135_02801 [Escherichia coli KTE175]
gi|431492143|gb|ELH71746.1| hypothetical protein A15W_02517 [Escherichia coli KTE211]
gi|431616349|gb|ELI85412.1| hypothetical protein WK3_02010 [Escherichia coli KTE139]
gi|431627854|gb|ELI96236.1| hypothetical protein WK7_02086 [Escherichia coli KTE148]
Length = 238
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 129/246 (52%), Gaps = 16/246 (6%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ +A K+G P+P NT L V+E+AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGATSKIYAKFGVEIYAAAKQGEPDPELNTSLKFVIERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A G E F++ YE +G G I+ E LT + R++A VR + GG
Sbjct: 61 KHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMIIAETLTSNVNRTIANVRTIFNKKGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV + F V+ K TD D + +I L+A E D + E
Sbjct: 121 IGAAGSVSYMFDNTGVIVFKGTDP--DHIFEILLEA-----------EIDVRDVTEEEGN 167
Query: 256 KVVST--SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELD 313
V+ T +D + I L+ AGI + E++ + +E+ E +E+ + L+ L + D
Sbjct: 168 IVIYTEPTDLHKGIAA-LKAAGITEFSTTELEMIAQSEVELSPEDLEIFEGLVDALEDDD 226
Query: 314 DVDAVY 319
DV VY
Sbjct: 227 DVQKVY 232
>gi|432432190|ref|ZP_19674622.1| hypothetical protein A13K_02480 [Escherichia coli KTE187]
gi|432844855|ref|ZP_20077754.1| hypothetical protein A1YS_02499 [Escherichia coli KTE141]
gi|433208139|ref|ZP_20391819.1| hypothetical protein WI1_01908 [Escherichia coli KTE97]
gi|430953739|gb|ELC72637.1| hypothetical protein A13K_02480 [Escherichia coli KTE187]
gi|431395182|gb|ELG78695.1| hypothetical protein A1YS_02499 [Escherichia coli KTE141]
gi|431730255|gb|ELJ93823.1| hypothetical protein WI1_01908 [Escherichia coli KTE97]
Length = 238
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 130/244 (53%), Gaps = 12/244 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ +A K+G P+P NT L V+E+AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGATSKIYAKFGVEIYAAAKQGEPDPELNTSLKFVIERAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A G E F++ YE +G G I+ E LT + R++A VR + GG
Sbjct: 61 KHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMIIAETLTSNVNRTIANVRTIFNKKGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
+ GSV + F V+ K TD D + +I L+A DV D T+E+ Y
Sbjct: 121 IGAAGSVSYMFDNTGVIVFKGTDP--DHIFEILLEAEV-DV------RDVTEEEGNIVIY 171
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+D + I L+ AGI + E++ + +E+ E +E+ + L+ L + DDV
Sbjct: 172 --TEPTDLHKGIAA-LKAAGITDFSTTELEMIAQSEVELSPEDLEIFEGLVDALEDDDDV 228
Query: 316 DAVY 319
VY
Sbjct: 229 QKVY 232
>gi|114771672|ref|ZP_01449076.1| hypothetical protein OM2255_13329 [Rhodobacterales bacterium
HTCC2255]
gi|114547744|gb|EAU50634.1| hypothetical protein OM2255_13329 [alpha proteobacterium HTCC2255]
Length = 246
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 126/243 (51%), Gaps = 17/243 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKG QD ++KL+S++ KE+ A K G P+P N L +++AK VPKD+++
Sbjct: 8 ANIQHRKGRQDKLRSKLFSKLSKEITVAAKMGDPDPEKNPRLRLAVKEAKSNSVPKDVID 67
Query: 141 RNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 200
R I +A+ E + E YE YG GV+++VE +TD R+ ++VR + GG +A+ G
Sbjct: 68 RAIGKATGGDDENYDEIRYEGYGPNGVAVIVEAMTDNKNRTASSVRSLFTKSGGNLAETG 127
Query: 201 SVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
+V F F R +V + D + + A+DAGAEDV + E + +
Sbjct: 128 AVSFMFERKGLVVYGAEAGNVDAMFEHAIDAGAEDV------------ESTEDGHDIYCA 175
Query: 261 SDNYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDVDAV 318
S + D++ L A ET ++L+ P T E+D E LI L + DD+ V
Sbjct: 176 STDLNDVSKALELALGESET---TKLIWKPTTMTELDLSGAEKIMRLIENLEDDDDIQNV 232
Query: 319 YTD 321
T+
Sbjct: 233 TTN 235
>gi|349687695|ref|ZP_08898837.1| hypothetical protein Gobo1_10902 [Gluconacetobacter oboediens
174Bp2]
Length = 249
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 129/246 (52%), Gaps = 26/246 (10%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKGAQDAK+AK ++++ +E+ A ++G P+P N L A + A+E+++PKD VER
Sbjct: 10 IMHRKGAQDAKRAKQFAKVIREITVATREGMPDPAMNPRLRAAISAAREVNMPKDTVERA 69
Query: 143 IKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+AS G + + E YE YG GV+++VE LTD R+ + VR GG + + S
Sbjct: 70 IKKASGAGGGDDYTEVRYEGYGPAGVAVIVEGLTDNRNRTASDVRAAFSKHGGSLGETNS 129
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
V F F R V+ A +D L++ L+AGAE+V + + ++V
Sbjct: 130 VSFMFTRLGVITYPADAASEDDLIEAGLEAGAENV------------ETVDGMHEVTCPV 177
Query: 262 DNYTDITTKLREAGIPFETDNGS------ELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+++ + L ET G + P T+E+D++ +LI L + DDV
Sbjct: 178 ESFFAVRDAL-------ETRFGEPASAKLDWRPSNTVELDEDKARSVFKLIDTLEDHDDV 230
Query: 316 DAVYTD 321
AVY +
Sbjct: 231 QAVYAN 236
>gi|420237066|ref|ZP_14741538.1| hypothetical protein A200_04644 [Parascardovia denticolens IPLA
20019]
gi|391879703|gb|EIT88208.1| hypothetical protein A200_04644 [Parascardovia denticolens IPLA
20019]
Length = 252
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 116/215 (53%), Gaps = 15/215 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++++ K + A + GG +P N L + KAK+ VP D + R +KR
Sbjct: 13 KKAAIDAKRGKLFAKLIKNIEIAARTGGGDPNGNPTLYDAIVKAKKSSVPADNITRAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S E G + E VYE Y GG+ ++++ LTD R+ A VR + GG +A+ GSV
Sbjct: 73 GSGEEAGGANYEEIVYEGYAPGGIGLIIQCLTDNRNRAAADVRSTLSKNGGSLAENGSVS 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
F F R + + D D D L + A +AGA+DV ED+ + +Y V +
Sbjct: 133 FNFHRQGQIEVPAKDVDFDSLFETAAEAGADDV-----------EDKGD-FYLVTTDPST 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEA 298
D+ +++AG +++ + L+P+ ++E+D E
Sbjct: 181 VVDVRKAIQDAGFDYDSAE-TTLVPLNSVELDLEG 214
>gi|347760567|ref|YP_004868128.1| hypothetical protein GLX_13460 [Gluconacetobacter xylinus NBRC
3288]
gi|347579537|dbj|BAK83758.1| hypothetical protein GLX_13460 [Gluconacetobacter xylinus NBRC
3288]
Length = 249
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 129/246 (52%), Gaps = 26/246 (10%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKGAQDAK+AK ++++ +E+ A ++G P+P N L A + A+E+++PKD VER
Sbjct: 10 IMHRKGAQDAKRAKQFAKVIREITVAAREGMPDPAMNPRLRAAISAAREVNMPKDTVERA 69
Query: 143 IKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+AS G + + E YE YG GV+++VE LTD R+ + VR GG + + S
Sbjct: 70 IKKASGAGGGDDYTEVRYEGYGPAGVAVIVEGLTDNRNRTASDVRAAFSKHGGSLGETNS 129
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 261
V F F R V+ A +D L++ L+AGAE+V + + ++V
Sbjct: 130 VSFMFTRLGVIAYPLDAASEDDLIEAGLEAGAENV------------ETVDGMHEVTCPV 177
Query: 262 DNYTDITTKLREAGIPFETDNGS------ELLPITTIEVDDEAMELNKELIAKLLELDDV 315
+++ + L ET G + P T+E+D++ +LI L + DDV
Sbjct: 178 ESFFAVRDAL-------ETRFGEPASAKLDWRPGNTVELDEDKARSVFKLIDTLEDHDDV 230
Query: 316 DAVYTD 321
AVY +
Sbjct: 231 QAVYAN 236
>gi|310658626|ref|YP_003936347.1| conserved protein of unknown function [[Clostridium] sticklandii]
gi|308825404|emb|CBH21442.1| conserved protein of unknown function [[Clostridium] sticklandii]
Length = 237
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 132/246 (53%), Gaps = 16/246 (6%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR + I +KG QDAK+AK++++ + + A K GG +P N L +EKAK ++P
Sbjct: 1 MGRIGN-IINKKGKQDAKRAKIFTKYARLISVAAKMGGGDPEYNANLKNAIEKAKSENMP 59
Query: 136 KDIVERNIKRASEKGQ-EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGG 194
D +ER IK+ G E++ YE YG GGV++++E LTD R+ +R + GG
Sbjct: 60 NDNIERAIKKGIGSGDGESYEHITYEGYGPGGVAVIIETLTDNKNRTAGNMRYYLDKNGG 119
Query: 195 KMADPGSVMFKF-RRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAER 253
+ G V F F R+ +++ K D +D L++ AL+AGAED + T+ED
Sbjct: 120 NLGTAGCVSFMFDRKGQIIIEKSDDISEDTLMEQALEAGAEDFV--------TEED---- 167
Query: 254 YYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELD 313
+ V++ +++ + L G F T + E++P T + D+ + +++ L E D
Sbjct: 168 CFVVLTDIESFLQVKDALSSHGYSFVTAD-IEMIPQTYTAISDDQKKSMDKMMDMLEEDD 226
Query: 314 DVDAVY 319
DV VY
Sbjct: 227 DVQNVY 232
>gi|260598338|ref|YP_003210909.1| hypothetical protein CTU_25460 [Cronobacter turicensis z3032]
gi|260217515|emb|CBA31695.1| UPF0082 protein ESA_01378 [Cronobacter turicensis z3032]
Length = 246
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 128/236 (54%), Gaps = 17/236 (7%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
RK AQDAK+ K+++++ +E+++A + GG +P SN L A ++KA ++ +D + R I R
Sbjct: 13 RKAAQDAKRGKIFTKIIRELVTAARLGGGDPGSNPRLRAAIDKALANNMTRDTLNRAIAR 72
Query: 146 ASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMF 204
++A +E + YE YG GG +++VE L+D R+VA VR CGG + GSV +
Sbjct: 73 GVGGDEDANMETIIYEGYGPGGTAVMVECLSDNRNRTVAEVRHAFSKCGGNLGTDGSVAY 132
Query: 205 KFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNY 264
F + V I F D+D +++ AL+AGAEDV+ T +D A V + +
Sbjct: 133 LFSKKGV--ISFDAGDEDTIMEAALEAGAEDVV--------TYDDGA---IDVYTAWEEM 179
Query: 265 TDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
+ L AG+ + DN ++P T ++D E LI L + DDV VY
Sbjct: 180 GAVRDALESAGL--KADNAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVY 233
>gi|125717446|ref|YP_001034579.1| hypothetical protein SSA_0586 [Streptococcus sanguinis SK36]
gi|401682260|ref|ZP_10814154.1| transcriptional regulator, YeeN [Streptococcus sp. AS14]
gi|422849243|ref|ZP_16895919.1| protein of hypothetical function DUF28 [Streptococcus sanguinis
SK115]
gi|422860715|ref|ZP_16907359.1| protein of hypothetical function DUF28 [Streptococcus sanguinis
SK330]
gi|422863167|ref|ZP_16909799.1| protein of hypothetical function DUF28 [Streptococcus sanguinis
SK408]
gi|422871479|ref|ZP_16917972.1| protein of hypothetical function DUF28 [Streptococcus sanguinis
SK1087]
gi|166229080|sp|A3CLH4.1|Y586_STRSV RecName: Full=Probable transcriptional regulatory protein SSA_0586
gi|125497363|gb|ABN44029.1| Conserved uncharacterized protein [Streptococcus sanguinis SK36]
gi|325690264|gb|EGD32268.1| protein of hypothetical function DUF28 [Streptococcus sanguinis
SK115]
gi|327469098|gb|EGF14570.1| protein of hypothetical function DUF28 [Streptococcus sanguinis
SK330]
gi|327473467|gb|EGF18887.1| protein of hypothetical function DUF28 [Streptococcus sanguinis
SK408]
gi|328945647|gb|EGG39798.1| protein of hypothetical function DUF28 [Streptococcus sanguinis
SK1087]
gi|400184696|gb|EJO18934.1| transcriptional regulator, YeeN [Streptococcus sp. AS14]
Length = 238
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 126/246 (51%), Gaps = 12/246 (4%)
Query: 76 MGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVP 135
MGR+ + I +K A+D +K+Y++ G E+ A KKG P+P SNT L V+++AK+ VP
Sbjct: 1 MGRKWANIVAKKTAKDGANSKVYAKFGVEIYVAAKKGDPDPESNTALKFVIDRAKQAQVP 60
Query: 136 KDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
K ++++ I +A E F E YE +G G ++V+ LT + R+ A VR GG
Sbjct: 61 KHVIDKAIDKAKGNTDETFTEGRYEGFGPNGSMLIVDTLTSNVNRTAANVRAAFGKNGGN 120
Query: 196 MADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 255
M GSV + F V I F D D + E ++E V+ DD + + E
Sbjct: 121 MGASGSVAYLFDNKGV--IVFAGDDADSVF--------EQLLEADVDVDDVEAE--EGSI 168
Query: 256 KVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 315
V + + LRE+GI E++P + +E+ E +E ++L + L + +DV
Sbjct: 169 TVYTAPTDLHKAIVALRESGIQEFQVTELEMIPQSEVELTGEDLETFEKLYSVLEDDEDV 228
Query: 316 DAVYTD 321
+YT+
Sbjct: 229 QKIYTN 234
>gi|291533992|emb|CBL07105.1| conserved hypothetical protein TIGR01033 [Megamonas hypermegale
ART12/1]
Length = 243
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 137/247 (55%), Gaps = 23/247 (9%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +KGA DA +AK+ +++G+E+ AV+ GG +PT N L L KAK ++PKD
Sbjct: 8 ANIKRKKGANDAIRAKMTTKIGREITIAVRMGGADPTGNMRLKLALSKAKSNNIPKD--- 64
Query: 141 RNIKRASEKGQEA-----FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGK 195
NI RA +KG A + E +YE YG G ++++EV+TD R+ A +R + GG
Sbjct: 65 -NINRAIQKGLGASDGSNYEELIYEGYGPAGSAVMLEVMTDNRNRTAADIRHLFSKYGGN 123
Query: 196 MADPGSVMFKF-RRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERY 254
+ + G V + F ++A V K D++ L+ IALDAGAED EDD+
Sbjct: 124 LGETGCVGWMFHKKAIFVVDKEAFDDEESLMMIALDAGAEDFKA----EDDS-------- 171
Query: 255 YKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDD 314
+++ + +++ I+ L E I ++ ++P TT++V+ + E + L+ L E DD
Sbjct: 172 FEITAAPEDFDAISQALEENNIE-TVESEITMIPDTTVKVEGKDAEKMQTLLDMLEEHDD 230
Query: 315 VDAVYTD 321
V VY++
Sbjct: 231 VQNVYSN 237
>gi|239986450|ref|ZP_04707114.1| hypothetical protein SrosN1_03996 [Streptomyces roseosporus NRRL
11379]
gi|291443397|ref|ZP_06582787.1| UPF0082 protein [Streptomyces roseosporus NRRL 15998]
gi|291346344|gb|EFE73248.1| UPF0082 protein [Streptomyces roseosporus NRRL 15998]
Length = 250
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 127/238 (53%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K DAK+ KL++++ K + A + GG +P N L ++KAK+ VP ++ +KR
Sbjct: 13 KKAVIDAKRGKLFAKLIKNIEVAARSGGVDPDGNPTLVDAIQKAKKSSVPNKNIDSAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
E G + +YE YG GV++++E LTD R+ + VR + GG MADPGSV
Sbjct: 73 GGGLEAGGTDYETIMYEGYGPNGVAVLIECLTDNRNRAASDVRVAMTRNGGSMADPGSVS 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R VV + + +D +L LDAGAE+V D E ++VVS + +
Sbjct: 133 YLFNRKGVVIVPKGELTEDDVLGAVLDAGAEEV-----------NDLGET-FEVVSEATD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ T L+EAGI +++ + LP +E+D+E +LI L + DDV V+ +
Sbjct: 181 MVAVRTALQEAGIDYDSAE-ANFLPTMQVELDEEGARKIFKLIDALEDSDDVQNVFAN 237
>gi|262372335|ref|ZP_06065614.1| conserved hypothetical protein [Acinetobacter junii SH205]
gi|262312360|gb|EEY93445.1| conserved hypothetical protein [Acinetobacter junii SH205]
Length = 249
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 141/246 (57%), Gaps = 22/246 (8%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK QDA + K++++ +E+++A + GGP+ SN L AV+EKA +++ +D +
Sbjct: 8 ANIKHRKAKQDASRGKVFTKYIREIVTASRLGGPDAASNPRLRAVVEKALSVNMTRDTIN 67
Query: 141 RNIKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I+R A + + E YE YG GGV+++VE +TD + R+V VR G +
Sbjct: 68 RAIQRGAGGEDNDDLKEVTYEGYGVGGVAVIVETMTDNLNRTVPDVRHCFSKTNGNLGTN 127
Query: 200 GSVMFKFRRARVVNIKFTDAD-KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
GSV + F + I F D +D+++++AL+AGA+D+ + DED V+
Sbjct: 128 GSVAYLFTKRG--EISFDDVSLEDKVMEVALEAGADDI--------EIDEDS----ILVI 173
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELL-PITTIEVD--DEAMELNKELIAKLLELDDV 315
++ +++ D+ L AG+ ++DN ++ P T E++ D+A ++ K +I L +LDDV
Sbjct: 174 TSPESFGDVQDALTAAGL--KSDNAEVVMSPSTKAEINDIDQAKQIMK-MIDMLEDLDDV 230
Query: 316 DAVYTD 321
VYT+
Sbjct: 231 QNVYTN 236
>gi|373496583|ref|ZP_09587129.1| UPF0082 protein [Fusobacterium sp. 12_1B]
gi|404368611|ref|ZP_10973961.1| UPF0082 protein [Fusobacterium ulcerans ATCC 49185]
gi|313687909|gb|EFS24744.1| UPF0082 protein [Fusobacterium ulcerans ATCC 49185]
gi|371965472|gb|EHO82972.1| UPF0082 protein [Fusobacterium sp. 12_1B]
Length = 249
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 122/220 (55%), Gaps = 16/220 (7%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I RKGAQD K+AKL+++ G+E+ A K+GG +P+ N L +EKAK ++PKDI
Sbjct: 6 KWNNIQHRKGAQDKKRAKLFTKFGRELTIAAKEGGGDPSFNPRLRLAIEKAKAGNMPKDI 65
Query: 139 VERNIKRASE--KGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKM 196
++R IK+ + +G E F E YE YG G + +V+V+TD RS + VR GG +
Sbjct: 66 LDRAIKKGTGELEGVE-FSEIRYEGYGPAGTAFIVDVVTDNKNRSASEVRMTFTRKGGNL 124
Query: 197 ADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
G+V + F++ V+ +K D D+ + AL+AGAEDV E ED ++
Sbjct: 125 GTDGAVAWMFKKQGVITVKSEGIDPDEFMMAALEAGAEDVSE----EDGV--------FE 172
Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDD 296
V++ + + L+ AG +E S + P +E+ D
Sbjct: 173 VITDYTEFQTVLENLKTAGYAYEEAEIS-MNPENKVEITD 211
>gi|160939247|ref|ZP_02086598.1| hypothetical protein CLOBOL_04141 [Clostridium bolteae ATCC
BAA-613]
gi|158438210|gb|EDP15970.1| hypothetical protein CLOBOL_04141 [Clostridium bolteae ATCC
BAA-613]
Length = 242
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 124/220 (56%), Gaps = 16/220 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +K DA K K+++ +G+E+ AVK+GG +P +N+ L V+ KAK ++P D ++
Sbjct: 8 ANIKHKKERNDAAKGKIFTVIGREIAVAVKEGGADPANNSKLRDVIAKAKANNMPNDTID 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IK+A+ E + YE YG GV+I+V+ LTD R+ A VR GG + P
Sbjct: 68 RGIKKAAGDANSVNYETLTYEGYGPNGVAIIVDTLTDNKNRTAANVRSAFTKGGGNVGTP 127
Query: 200 GSV--MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 257
GSV MF + +++ + D D D+L+ +ALDAGAED E E+D+ Y+V
Sbjct: 128 GSVSYMFDKKGQIIIDKEECDMDPDELMMLALDAGAEDFSE----EEDS--------YEV 175
Query: 258 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDE 297
V+ ++++ + L IP + + ++P T +E+ DE
Sbjct: 176 VTAPEDFSAVREALEAQSIPMMQADVT-MIPQTWVELTDE 214
>gi|407715729|ref|YP_006837009.1| hypothetical protein Q91_0466 [Cycloclasticus sp. P1]
gi|407256065|gb|AFT66506.1| hypothetical protein Q91_0466 [Cycloclasticus sp. P1]
Length = 248
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 118/200 (59%), Gaps = 13/200 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKGAQDAK+ KL++++ +E+ A K GP+P +N L A ++K ++ +D +E
Sbjct: 8 ANIRFRKGAQDAKRGKLFTKLIREITVATKAAGPDPDNNPRLRAAVDKGLSNNMKRDTIE 67
Query: 141 RNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
IK+ S E F E YE YG G++I+V+ LTD R+VA VR GG +
Sbjct: 68 TAIKKGSGTTDSENFDEIRYEGYGPAGIAIIVDCLTDNKNRTVAEVRHAFSKAGGNLGTS 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F++ +++ + D+D+L+D A++AGA+DVI T +D + ++V++
Sbjct: 128 GSVDYMFQKLGAISLS-SQLDEDRLMDAAIEAGADDVI--------THDDGS---FEVLT 175
Query: 260 TSDNYTDITTKLREAGIPFE 279
++++ + L E+G P+E
Sbjct: 176 PAEDFMMVRDALVESGFPYE 195
>gi|340778143|ref|ZP_08698086.1| hypothetical protein AaceN1_09856 [Acetobacter aceti NBRC 14818]
Length = 249
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 132/242 (54%), Gaps = 18/242 (7%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKGAQDAK+AK ++++ +E+ A + G P+P +N L A + A+E+++PKD VER
Sbjct: 10 IMHRKGAQDAKRAKQFAKVIREITVAARSGLPDPAANPRLRAAISAAREVNMPKDTVERA 69
Query: 143 IKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+A+ G + + E YE YG GV+++VE LTD R+ + VR GG + + S
Sbjct: 70 IKKATGAGGGDDYAEIRYEGYGPAGVAVIVEALTDNRNRTASEVRAAFSKYGGSLGEMNS 129
Query: 202 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV--VS 259
V F F+R V+ + A ++++L+ A++AGA++V+ + T E E ++ V V
Sbjct: 130 VAFMFKRLGVITYPASVASEEEMLEAAIEAGADNVVSTEETHEITCE--VESFFAVRDVL 187
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
++ KL + P +IE+D+E +L+ L + DDV VY
Sbjct: 188 EPKFGEPLSAKL-------------DWRPENSIELDEEKARTVLKLLDVLEDNDDVQNVY 234
Query: 320 TD 321
+
Sbjct: 235 AN 236
>gi|293395806|ref|ZP_06640088.1| glucose-1-phosphate adenylyl transferase [Serratia odorifera DSM
4582]
gi|291421743|gb|EFE94990.1| glucose-1-phosphate adenylyl transferase [Serratia odorifera DSM
4582]
Length = 247
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 127/235 (54%), Gaps = 14/235 (5%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
RK AQDAK+ K+++++ +E+++A K GG +P SN L A ++KA ++ +D + R I R
Sbjct: 13 RKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDSNPRLRAAMDKALSNNMTRDTMNRAIAR 72
Query: 146 ASEKGQEAFIEK-VYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMF 204
++ +E +YE YG GG +I++E L+D R+VA VR CGG + GSV +
Sbjct: 73 GVGGDDDSNMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFTKCGGNLGTDGSVAY 132
Query: 205 KFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNY 264
F + V+ D+D L++ AL+AGAED++ T +D A V + +N
Sbjct: 133 LFTKKGVITYA-PGLDEDTLMEAALEAGAEDIV--------TYDDGA---IDVYTAWENL 180
Query: 265 TDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
++ L AG E S ++P T ++D+E LI L + DDV VY
Sbjct: 181 GEVKDALTAAGFTAEAAEVS-MIPSTKADMDEETAPKLLRLIDMLEDCDDVQEVY 234
>gi|319944358|ref|ZP_08018632.1| YebC like protein [Lautropia mirabilis ATCC 51599]
gi|319742319|gb|EFV94732.1| YebC like protein [Lautropia mirabilis ATCC 51599]
Length = 242
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/246 (34%), Positives = 137/246 (55%), Gaps = 18/246 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKG QDAK+ L++R+ KE+ A K G +P N L +EKA + ++PKD V+
Sbjct: 8 ANIQHRKGRQDAKRGALFTRLIKEITVAAKMAGGDPAMNPRLRLAMEKAADGNMPKDTVQ 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I+R + E++ YE YG G +++++ LTD TR+VA VR + GG +
Sbjct: 68 RAIQRGVGGLEGVNYEEIRYEGYGVAGAAVIIDCLTDNRTRTVADVRHALTKHGGNLGTD 127
Query: 200 GSVMFKFRR-ARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV 258
GSV F+F ++V TD DK L+++ L+AGA+D++ N+D + E V+
Sbjct: 128 GSVAFQFTHCGQLVFAPGTDEDK--LMEVGLEAGAQDILS---NDDGSLE--------VI 174
Query: 259 STSDNYTDITTKLREAGIPFETDNGSELLPITTIEV-DDEAMELNKELIAKLLELDDVDA 317
+ ++ + T L AG+ E + + P +E+ D+A+++ K L A L +DDV
Sbjct: 175 TEPGDFIAVKTALEAAGLKAEVAEIT-MKPQNELELTGDDAVKMQKILDA-LENVDDVQQ 232
Query: 318 VYTDQI 323
VYT+ +
Sbjct: 233 VYTNAV 238
>gi|294786919|ref|ZP_06752173.1| conserved hypothetical protein [Parascardovia denticolens F0305]
gi|315226555|ref|ZP_07868343.1| glucose-1-phosphate adenylyltransferase [Parascardovia denticolens
DSM 10105 = JCM 12538]
gi|294485752|gb|EFG33386.1| conserved hypothetical protein [Parascardovia denticolens F0305]
gi|315120687|gb|EFT83819.1| glucose-1-phosphate adenylyltransferase [Parascardovia denticolens
DSM 10105 = JCM 12538]
Length = 252
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 116/215 (53%), Gaps = 15/215 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++++ K + A + GG +P N L + KAK+ VP D + R +KR
Sbjct: 13 KKAAIDAKRGKLFAKLIKNIEIAARTGGGDPNGNPTLYDAIVKAKKSSVPADNITRAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S E G + E VYE Y GG+ ++++ LTD R+ A VR + GG +A+ GSV
Sbjct: 73 GSGEEAGGANYEEIVYEGYAPGGIGLIIQCLTDNRNRAAADVRSTLSKNGGSLAENGSVS 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
F F R + + D D D L + A +AGA+DV ED+ + +Y V +
Sbjct: 133 FNFHRQGQIEVPAKDVDFDSLFETAAEAGADDV-----------EDKGD-FYLVTTDPST 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEA 298
D+ +++AG +++ + L+P+ ++E+D E
Sbjct: 181 VVDVRKAIQDAGFDYDSAE-TTLVPLNSVELDLEG 214
>gi|256371999|ref|YP_003109823.1| hypothetical protein Afer_1219 [Acidimicrobium ferrooxidans DSM
10331]
gi|256008583|gb|ACU54150.1| protein of unknown function DUF28 [Acidimicrobium ferrooxidans DSM
10331]
Length = 250
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/241 (34%), Positives = 135/241 (56%), Gaps = 18/241 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I +KGA D + KL++++ +++ A ++GG + ++N L +++KA++ VP+ +E
Sbjct: 8 ATIKHKKGAVDKARGKLFAKLIRQIEVAAREGGGDTSANATLRTMVQKARDASVPQATIE 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IKR + + + A E+V YE Y GGV+I+V LTD R+ A VR GG +A+P
Sbjct: 68 RAIKRGTGELEGARYEQVNYEGYAPGGVAIIVSCLTDNRNRTGADVRAAFSRNGGSLAEP 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
G+V ++F+R + + DAD+D+L AL AGAED+ DD D + V
Sbjct: 128 GAVSWQFQRLGQIRLS-RDADEDELFQAALAAGAEDLT------DDGD------AWLVTV 174
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDD--EAMELNKELIAKLLELDDVDA 317
+ + + L AG E+ EL+P TT+ V+D EA + + L+ L +LDDV
Sbjct: 175 AASDLGAVRDALEAAGFAVESAE-VELVPQTTVPVEDPQEARRVLR-LVEALEDLDDVQE 232
Query: 318 V 318
V
Sbjct: 233 V 233
>gi|145299763|ref|YP_001142604.1| hypothetical protein ASA_2843 [Aeromonas salmonicida subsp.
salmonicida A449]
gi|418358211|ref|ZP_12960891.1| hypothetical protein IYQ_07471 [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|166200355|sp|A4SPN4.1|Y2843_AERS4 RecName: Full=Probable transcriptional regulatory protein ASA_2843
gi|142852535|gb|ABO90856.1| conserved hypothetical protein [Aeromonas salmonicida subsp.
salmonicida A449]
gi|356688570|gb|EHI53128.1| hypothetical protein IYQ_07471 [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 246
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 129/241 (53%), Gaps = 17/241 (7%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAK+ K+++++ +E+ ++ + G P+P +N L A + A ++ ++ +
Sbjct: 8 ANIKHRKAAQDAKRGKIFTKLIREITTSARIGDPDPANNPRLRAAVTAALTSNMTRETIN 67
Query: 141 RNIKRASEKGQEAFIEK-VYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I R + G +E VYE YG G +++VE LTD R+VA VR GG +
Sbjct: 68 RAIARGAGGGDGEQLETIVYEGYGPAGSAVMVECLTDNRNRTVAEVRHAFSKSGGNLGTD 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F + + + F D+D L+D AL+AGA+DV+ T+ED + +V +
Sbjct: 128 GSVAYLFSKKGL--LTFVGVDEDALMDAALEAGADDVV--------TEEDGS---IEVYT 174
Query: 260 TSDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
T +++ + L AG F+ N ++P T E+D E LI L +LDDV V
Sbjct: 175 TPNDFGTVLDALEAAG--FKAQNAEVTMIPSTEAELDAETAPKLMRLIDMLEDLDDVQEV 232
Query: 319 Y 319
Y
Sbjct: 233 Y 233
>gi|455643852|gb|EMF22974.1| hypothetical protein H114_29905 [Streptomyces gancidicus BKS 13-15]
Length = 462
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 129/235 (54%), Gaps = 15/235 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K DAK+ KL++++ K + A + GG +P N L ++KAK+ VP ++ +KR
Sbjct: 13 KKAVIDAKRGKLFAKLIKNIEVAARMGGADPEGNPTLYDAIQKAKKQSVPNKNIDSAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
+ E G + +YE YG GV++++E LTD R+ + VR + GG MADPGSV
Sbjct: 73 GAGLEAGGADYETIMYEGYGPNGVAVLIECLTDNRNRAASDVRVAMTRNGGSMADPGSVS 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R VV + + +D +L LDAGAE+V +D E ++V+S + +
Sbjct: 133 YLFNRKGVVIVPKGELTEDDVLAAVLDAGAEEV-------NDLGES-----FEVISEATD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
+ T L++AGI +E+ + + +P +E+D+E + +LI L + DDV V
Sbjct: 181 LVAVRTALQDAGIDYESAD-ANFVPTMQVELDEEGAKKIFKLIDALEDSDDVQNV 234
>gi|411009970|ref|ZP_11386299.1| hypothetical protein AaquA_09592 [Aeromonas aquariorum AAK1]
gi|423195990|ref|ZP_17182573.1| YebC/PmpR family DNA-binding regulatory protein [Aeromonas
hydrophila SSU]
gi|404632791|gb|EKB29393.1| YebC/PmpR family DNA-binding regulatory protein [Aeromonas
hydrophila SSU]
Length = 246
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/240 (34%), Positives = 128/240 (53%), Gaps = 15/240 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAK+ K+++++ +E+ ++ + G +P +N L A + A ++ +D +
Sbjct: 8 ANIKHRKAAQDAKRGKIFTKLIREITTSARLGDADPANNPRLRAAVAAALTSNMTRDTIN 67
Query: 141 RNIKRASEKGQEAFIEK-VYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I R + G +E VYE YG G +++VE LTD R+VA VR CGG +
Sbjct: 68 RAIARGAGGGDGEQLETIVYEGYGPAGSAVMVECLTDNRNRTVAEVRHAFSKCGGNLGTD 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F + V + F AD+D L+D AL+AGA+DV+ ED T E V +
Sbjct: 128 GSVAYLFTKKGV--LTFVGADEDALMDAALEAGADDVV---TEEDGTIE--------VYT 174
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
T +++ + L AG E+ + ++P T E+D E LI L +LDDV VY
Sbjct: 175 TPNDFGTVLDGLEAAGFKPESAEVT-MIPSTEAELDAETAPKLMRLIDMLEDLDDVQEVY 233
>gi|295396079|ref|ZP_06806262.1| YebC like protein [Brevibacterium mcbrellneri ATCC 49030]
gi|294971020|gb|EFG46912.1| YebC like protein [Brevibacterium mcbrellneri ATCC 49030]
Length = 253
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 129/238 (54%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++++ K + A + GG + N L ++KAK+ VP D +ER +KR
Sbjct: 13 KKAAIDAKRGKLFAKLIKNIEVAARNGGADVAGNPTLYDAIQKAKKSSVPNDNIERAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
+ + G + +YE Y GGV++++E LTD R+ + VR V G MADPGSV
Sbjct: 73 GAGLDGGGVDYQTIMYEGYAPGGVALLIECLTDNRNRAASEVRVAVTRNNGSMADPGSVS 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R VV + +D +L+ LDAGAE+V +D D +V+S + +
Sbjct: 133 YNFNRKGVVAVPVEGTSEDAILEATLDAGAEEV------KDQGD------ILEVISEATD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ T L+EA I +++ + +P +++D E + LI L +LDDV V+T+
Sbjct: 181 LVAVRTALQEADIDYDSAE-ARFVPNLEVQLDAETAKKVFTLIDALEDLDDVQNVFTN 237
>gi|421837888|ref|ZP_16271935.1| hypothetical protein CFSAN001627_20023 [Clostridium botulinum
CFSAN001627]
gi|409739850|gb|EKN40376.1| hypothetical protein CFSAN001627_20023 [Clostridium botulinum
CFSAN001627]
Length = 258
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 122/217 (56%), Gaps = 15/217 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I +KG DAK+ K+++++GKE++ AVK+GGP+ SN L V+ KAK ++P D +ER+
Sbjct: 10 IQAKKGKVDAKRGKIFTKIGKEIVVAVKQGGPSADSNPRLRDVIAKAKANNMPNDTIERS 69
Query: 143 IKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 201
IK+AS + E + YE YG G++++V+VLTD RS VR GG + G
Sbjct: 70 IKKASGELNAVDYETITYEGYGPAGIAVLVDVLTDNKNRSAGNVRYAFTKQGGNIGSTGC 129
Query: 202 VMFKFR-RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 260
V F F+ + ++V K D+D+L+ +ALDAGAED + + Y V ++
Sbjct: 130 VSFMFQSKGQIVIEKKDGLDEDELMMMALDAGAEDF------------ESEDEVYAVTTS 177
Query: 261 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDE 297
+++ + L G+ F + +++P T +D+E
Sbjct: 178 QEDFGTVREALEAEGLEF-LEAEIKMVPDTYTAIDEE 213
>gi|261365817|ref|ZP_05978700.1| protein YebC [Neisseria mucosa ATCC 25996]
gi|288565625|gb|EFC87185.1| protein YebC [Neisseria mucosa ATCC 25996]
Length = 242
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 135/254 (53%), Gaps = 30/254 (11%)
Query: 79 RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDI 138
+ + I +K QDAK+ K+++R+ KE+ A + GG +P +N L LEKA E ++PKD
Sbjct: 6 KWANIQHKKARQDAKRGKIFTRLIKEITVAARMGGGDPGANPRLRLALEKAAENNMPKDN 65
Query: 139 VERNIKRASE--KGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKM 196
V+R I + + +G E +IE YE YG GG +++V+ LTD TR+VA VR GG +
Sbjct: 66 VQRAIDKGTGNLEGVE-YIELRYEGYGIGGAALMVDCLTDNKTRTVADVRHAFTKNGGNL 124
Query: 197 ADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
G V F F + + D+D L++ AL+AGAEDVI N+D + E
Sbjct: 125 GTDGCVAFNFVHQGYLVFE-PGVDEDALMEAALEAGAEDVI---TNDDGSIE-------- 172
Query: 257 VVSTSDNYTDITTKLREAG-------IPFETDNGSELLPITTIEVDDEAMELNKELIAKL 309
V++ +++ + L AG + N +EL D+A+++ K LI L
Sbjct: 173 VITAPNDWAGVKAALEAAGYKSVDGDVTMRAQNETEL-------SGDDAVKMQK-LIDAL 224
Query: 310 LELDDVDAVYTDQI 323
+LDDV VYT +
Sbjct: 225 EDLDDVQDVYTSAV 238
>gi|399524508|ref|ZP_10765046.1| DNA-binding regulatory protein, YebC/PmpR family [Atopobium sp.
ICM58]
gi|398374285|gb|EJN51971.1| DNA-binding regulatory protein, YebC/PmpR family [Atopobium sp.
ICM58]
Length = 253
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/240 (35%), Positives = 133/240 (55%), Gaps = 18/240 (7%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ KL++R+ K + A + GG +P N L ++KAK+ VP D ++R +KR
Sbjct: 13 KKAAIDAKRGKLFARLIKNIEVAARTGGGDPAGNPTLYDAIQKAKKNSVPADNIDRAVKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
S E G + +YE YG GV+ +VE LTD R+ + VR GG +ADPGSV
Sbjct: 73 GSGAEAGGANYETIMYEGYGPNGVAFLVECLTDNRNRAASDVRLGFTRHGGSLADPGSVS 132
Query: 204 FKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
+ F R VV + D D++ ++ LDAGAE+V ED D + + S
Sbjct: 133 YLFSRRGVVEVPAADGVDEESIMMAVLDAGAEEV------EDAGD------LFVIESDPK 180
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDE-AMELNKELIAKLLELDDVDAVYTD 321
+ + + L+EAGI +++ + + T +E+D E A+++NK LI L + DDV +YT+
Sbjct: 181 DVVAVRSALQEAGIDYDSAE-VQFVASTEVELDLEGALKVNK-LIDVLEDSDDVQNIYTN 238
>gi|395783845|ref|ZP_10463694.1| UPF0082 protein [Bartonella melophagi K-2C]
gi|395425967|gb|EJF92127.1| UPF0082 protein [Bartonella melophagi K-2C]
Length = 248
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 124/240 (51%), Gaps = 15/240 (6%)
Query: 83 IAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 142
I RKG QDA ++K++S++ +E+ A K+G P+P N L ++ AK +PKD +ER
Sbjct: 10 IMHRKGRQDAIRSKMFSKLAREITVAAKQGAPDPAMNPRLRLAIQNAKSQSMPKDNIERA 69
Query: 143 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 202
IK+AS E + E YE YG GGV+I+VE LTD R+ + VR GG + + GSV
Sbjct: 70 IKKASGGDVENYDEVRYEGYGPGGVAIIVEALTDNRNRTASNVRAAFTKSGGALGETGSV 129
Query: 203 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 262
F F R + D +++ A++AGAEDV E Y ++ +
Sbjct: 130 SFMFNRIGEIIYNLEAGTPDTIMEAAIEAGAEDV------------QTEEAGYHILCAFE 177
Query: 263 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELN-KELIAKLLELDDVDAVYTD 321
N ++ +K+ EA + E + + TT+ DE L+ L+ L + DDV VY +
Sbjct: 178 NIGEV-SKILEATLG-EAQSIKTVWKATTLAPVDEEKALSILRLLTTLEDDDDVQNVYAN 235
>gi|333899723|ref|YP_004473596.1| hypothetical protein Psefu_1526 [Pseudomonas fulva 12-X]
gi|333114988|gb|AEF21502.1| UPF0082 protein yeeN [Pseudomonas fulva 12-X]
Length = 248
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 124/241 (51%), Gaps = 16/241 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RKG QDAK+ K+++++ +E+ A K GGP P N L ++KA ++ +D+++
Sbjct: 8 ANIKHRKGRQDAKRGKIFTKLIRELTVAAKHGGPIPADNPRLRLAVDKALTNNMSRDVID 67
Query: 141 RNIKRASEKGQ-EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R I R + + + +E YE Y GV+I+VEV+TD R+ A VR CGG +
Sbjct: 68 RAIARGAGNNEADNVVEFSYEGYAPSGVAIIVEVMTDNRNRTAAEVRHAFTKCGGNLGTD 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F R I F D+D L++ AL+AGA+DV + E +VS
Sbjct: 128 GSVAYMFERKG--QISFASVDEDALMEAALEAGADDV------------EMGEEGAALVS 173
Query: 260 TS-DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 318
TS + + L AG E + + I+ D E + +LI L +LDDV +V
Sbjct: 174 TSFTEFHAVNESLAAAGFKAEEAEIAMIPSISAPITDLETAQKVFKLIDMLEDLDDVQSV 233
Query: 319 Y 319
Y
Sbjct: 234 Y 234
>gi|220935405|ref|YP_002514304.1| hypothetical protein Tgr7_2237 [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|254801696|sp|B8GUJ7.1|Y2237_THISH RecName: Full=Probable transcriptional regulatory protein Tgr7_2237
gi|219996715|gb|ACL73317.1| conserved hypothetical protein [Thioalkalivibrio sulfidophilus
HL-EbGr7]
Length = 249
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 118/200 (59%), Gaps = 13/200 (6%)
Query: 81 SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
+ I RK AQDAK+ KL++++ KE+ A + GG + SN L ++KA + ++ KD VE
Sbjct: 8 ANIQHRKNAQDAKRGKLFTKLIKEITVAARMGGSDLNSNPRLRLAVDKALDANMTKDTVE 67
Query: 141 RNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
R IKR + + + E++ YE YG GGV+I+V+ +TD R+VA VR CGG +
Sbjct: 68 RAIKRGAGELEGVNYEEIRYEGYGPGGVAIMVDTMTDNRNRTVAEVRHAFTKCGGNLGTD 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
GSV + F + V++ +D+D+++++AL+AGAEDV V +D + E V++
Sbjct: 128 GSVAYLFEKQGVLSYP-AGSDEDRIMEVALEAGAEDV---AVGDDGSIE--------VIT 175
Query: 260 TSDNYTDITTKLREAGIPFE 279
D+Y + + EAG+ E
Sbjct: 176 NPDDYEAVRAAMTEAGLKPE 195
>gi|407280037|ref|ZP_11108507.1| hypothetical protein RhP14_26271 [Rhodococcus sp. P14]
Length = 250
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 129/238 (54%), Gaps = 15/238 (6%)
Query: 86 RKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 145
+K A DAK+ K+++++ K + A + GG +P N L ++KAK+ VP D +ER KR
Sbjct: 13 KKAAIDAKRGKMFAKLIKNIEVAARTGGGDPAGNPTLYDAIQKAKKSSVPNDNIERARKR 72
Query: 146 AS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 203
+ E G + YE YG GV++++E LTD R+ VR + GG MADPGSV
Sbjct: 73 GAGEEAGGADWQTITYEGYGPSGVAVLIECLTDNRNRAAGEVRTAMTRNGGNMADPGSVS 132
Query: 204 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 263
+ F R VV ++ +D++L++ L+AGAE++ D D +++VS + +
Sbjct: 133 YLFTRKGVVVLEKNGRTEDEILEVVLEAGAEEI------NDLGDS------FEIVSEAGD 180
Query: 264 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 321
+ T L EAGI +E+ + + + VD E+ +L+ L + DDV VYT+
Sbjct: 181 LIAVRTALVEAGIDYESAD-PDFRASVEVPVDAESARKVFKLVDALEDSDDVQNVYTN 237
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.314 0.131 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,755,515,594
Number of Sequences: 23463169
Number of extensions: 192694161
Number of successful extensions: 584278
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3758
Number of HSP's successfully gapped in prelim test: 293
Number of HSP's that attempted gapping in prelim test: 573558
Number of HSP's gapped (non-prelim): 4146
length of query: 323
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 181
effective length of database: 9,027,425,369
effective search space: 1633963991789
effective search space used: 1633963991789
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 77 (34.3 bits)